Query 004895
Match_columns 724
No_of_seqs 462 out of 3613
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 14:40:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.5E-81 9.8E-86 711.5 41.1 654 38-713 23-730 (889)
2 PLN03210 Resistant to P. syrin 100.0 7.9E-51 1.7E-55 489.5 40.8 503 157-719 181-744 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.7E-43 3.7E-48 366.1 20.2 276 165-456 1-284 (287)
4 KOG0617 Ras suppressor protein 99.6 1.9E-17 4.1E-22 145.8 -3.9 166 540-719 24-192 (264)
5 PRK04841 transcriptional regul 99.5 5.4E-13 1.2E-17 160.7 24.8 296 156-503 10-332 (903)
6 KOG0444 Cytoskeletal regulator 99.5 5.2E-16 1.1E-20 161.9 -2.7 151 526-678 54-207 (1255)
7 PLN00113 leucine-rich repeat r 99.5 2.6E-13 5.5E-18 164.5 13.3 150 526-678 117-270 (968)
8 PLN00113 leucine-rich repeat r 99.4 1.3E-12 2.9E-17 158.3 14.3 179 526-717 92-278 (968)
9 COG2909 MalT ATP-dependent tra 99.4 2.9E-11 6.2E-16 132.7 20.6 301 153-505 12-340 (894)
10 KOG0617 Ras suppressor protein 99.4 1.6E-14 3.5E-19 127.5 -3.9 147 527-678 33-183 (264)
11 KOG0472 Leucine-rich repeat pr 99.3 8.7E-14 1.9E-18 138.7 -2.0 180 527-719 206-477 (565)
12 KOG0444 Cytoskeletal regulator 99.3 1.5E-13 3.3E-18 143.8 -0.9 150 526-679 102-256 (1255)
13 KOG4194 Membrane glycoprotein 99.3 2.5E-13 5.4E-18 141.4 -0.2 150 565-720 259-412 (873)
14 KOG4194 Membrane glycoprotein 99.3 1E-12 2.2E-17 137.0 2.7 180 528-718 150-335 (873)
15 TIGR03015 pepcterm_ATPase puta 99.3 6E-10 1.3E-14 114.0 23.2 186 178-372 40-242 (269)
16 PRK00411 cdc6 cell division co 99.3 8.5E-10 1.8E-14 119.5 25.0 296 158-481 28-356 (394)
17 TIGR02928 orc1/cdc6 family rep 99.2 5.8E-09 1.3E-13 111.8 27.6 299 160-481 15-348 (365)
18 PF01637 Arch_ATPase: Archaeal 99.2 8.6E-11 1.9E-15 117.5 11.6 197 162-367 1-233 (234)
19 TIGR00635 ruvB Holliday juncti 99.2 1.4E-09 3E-14 113.4 20.5 274 159-483 3-289 (305)
20 PRK00080 ruvB Holliday junctio 99.2 7.9E-10 1.7E-14 116.0 17.1 277 156-483 21-310 (328)
21 PF05729 NACHT: NACHT domain 99.1 5.3E-10 1.2E-14 105.2 12.7 145 182-338 1-163 (166)
22 PLN03210 Resistant to P. syrin 99.1 6.6E-10 1.4E-14 135.4 14.2 43 634-678 793-835 (1153)
23 PRK15370 E3 ubiquitin-protein 99.1 4.7E-10 1E-14 127.9 10.0 168 527-719 199-386 (754)
24 KOG0472 Leucine-rich repeat pr 99.1 2.3E-11 4.9E-16 121.7 -0.5 151 526-680 387-540 (565)
25 COG3899 Predicted ATPase [Gene 99.1 5.4E-09 1.2E-13 121.6 18.9 268 162-443 2-334 (849)
26 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.5E-15 106.1 6.2 128 573-707 17-147 (175)
27 KOG0618 Serine/threonine phosp 99.0 8.2E-11 1.8E-15 129.5 1.3 171 528-711 288-487 (1081)
28 PRK15370 E3 ubiquitin-protein 99.0 1.1E-09 2.5E-14 124.8 10.1 164 528-718 242-406 (754)
29 PF14580 LRR_9: Leucine-rich r 98.9 9.1E-10 2E-14 102.4 5.3 124 583-716 5-129 (175)
30 PRK15387 E3 ubiquitin-protein 98.9 9.4E-09 2E-13 116.7 11.9 134 526-680 221-354 (788)
31 KOG1259 Nischarin, modulator o 98.9 3.3E-10 7.1E-15 109.2 -0.2 134 574-717 283-416 (490)
32 KOG4658 Apoptotic ATPase [Sign 98.9 8.9E-09 1.9E-13 119.5 10.8 163 539-712 513-680 (889)
33 PTZ00112 origin recognition co 98.9 3E-07 6.6E-12 102.4 21.9 243 160-423 755-1028(1164)
34 PRK15387 E3 ubiquitin-protein 98.8 1.3E-08 2.9E-13 115.5 11.6 169 526-717 241-419 (788)
35 PRK13342 recombination factor 98.8 5E-08 1.1E-12 105.6 15.4 181 156-371 8-199 (413)
36 COG2256 MGS1 ATPase related to 98.8 8.4E-08 1.8E-12 97.4 15.1 175 156-366 20-210 (436)
37 PRK07003 DNA polymerase III su 98.8 2.5E-07 5.4E-12 102.6 19.3 188 156-370 12-223 (830)
38 KOG0532 Leucine-rich repeat (L 98.8 3.7E-10 8E-15 118.1 -3.1 170 532-717 80-251 (722)
39 cd00116 LRR_RI Leucine-rich re 98.7 1.2E-08 2.6E-13 107.3 6.7 185 526-715 80-293 (319)
40 PRK06893 DNA replication initi 98.7 1.7E-07 3.6E-12 92.8 13.9 155 179-370 37-205 (229)
41 KOG0532 Leucine-rich repeat (L 98.7 6E-10 1.3E-14 116.5 -4.3 147 559-719 83-230 (722)
42 PRK12402 replication factor C 98.7 3.2E-07 7E-12 97.2 16.0 202 156-367 11-225 (337)
43 KOG3207 Beta-tubulin folding c 98.7 5.7E-09 1.2E-13 106.2 2.2 185 526-712 120-313 (505)
44 KOG0618 Serine/threonine phosp 98.7 2.2E-09 4.8E-14 118.5 -0.8 181 527-719 219-426 (1081)
45 PRK04195 replication factor C 98.7 2E-06 4.4E-11 95.1 21.5 186 156-373 10-207 (482)
46 COG1474 CDC6 Cdc6-related prot 98.7 1.5E-05 3.2E-10 83.9 26.7 201 162-370 19-240 (366)
47 PLN03025 replication factor C 98.7 4.2E-07 9.2E-12 95.0 15.2 185 156-365 9-197 (319)
48 KOG1259 Nischarin, modulator o 98.6 4.7E-09 1E-13 101.4 -0.5 129 527-660 284-415 (490)
49 KOG4237 Extracellular matrix p 98.6 7.4E-09 1.6E-13 103.9 0.5 25 694-718 316-340 (498)
50 PRK14961 DNA polymerase III su 98.6 1.4E-06 3.1E-11 92.5 17.5 195 156-366 12-218 (363)
51 cd00116 LRR_RI Leucine-rich re 98.6 3.7E-08 8.1E-13 103.5 5.4 179 527-713 51-263 (319)
52 PRK14949 DNA polymerase III su 98.6 9.2E-07 2E-11 100.2 16.5 186 156-368 12-220 (944)
53 PRK14960 DNA polymerase III su 98.6 3E-06 6.5E-11 93.3 19.8 184 156-366 11-217 (702)
54 TIGR03420 DnaA_homol_Hda DnaA 98.6 7.1E-07 1.5E-11 88.6 13.9 171 164-370 21-203 (226)
55 KOG4237 Extracellular matrix p 98.6 4.3E-09 9.4E-14 105.6 -2.1 89 615-712 269-358 (498)
56 PRK00440 rfc replication facto 98.6 1.6E-06 3.5E-11 91.1 17.2 184 156-366 13-201 (319)
57 PRK14963 DNA polymerase III su 98.6 1.6E-06 3.4E-11 95.2 17.1 197 156-365 10-214 (504)
58 PRK05564 DNA polymerase III su 98.6 1.6E-06 3.5E-11 90.4 16.5 176 160-366 4-188 (313)
59 PRK12323 DNA polymerase III su 98.6 8.5E-07 1.8E-11 97.2 14.7 182 156-368 12-225 (700)
60 PF13173 AAA_14: AAA domain 98.6 1.4E-07 3E-12 84.4 7.3 121 181-330 2-127 (128)
61 PF05496 RuvB_N: Holliday junc 98.6 4.2E-06 9.1E-11 79.7 17.4 187 156-372 20-225 (233)
62 PTZ00202 tuzin; Provisional 98.6 5.4E-06 1.2E-10 86.1 19.5 167 153-338 255-434 (550)
63 COG4886 Leucine-rich repeat (L 98.6 6.7E-08 1.5E-12 104.8 6.0 176 527-717 116-294 (394)
64 PF13401 AAA_22: AAA domain; P 98.6 2.7E-07 5.9E-12 82.9 8.7 117 180-306 3-125 (131)
65 COG3903 Predicted ATPase [Gene 98.5 4E-07 8.8E-12 93.2 10.4 291 180-504 13-315 (414)
66 PRK14957 DNA polymerase III su 98.5 3.1E-06 6.7E-11 93.0 17.3 188 156-370 12-223 (546)
67 PRK06645 DNA polymerase III su 98.5 2.9E-06 6.2E-11 92.7 16.7 179 156-365 17-226 (507)
68 KOG2028 ATPase related to the 98.5 8.7E-07 1.9E-11 88.3 11.3 177 157-364 135-332 (554)
69 cd01128 rho_factor Transcripti 98.5 3.2E-07 6.9E-12 91.0 8.2 94 179-273 14-115 (249)
70 PRK14956 DNA polymerase III su 98.5 2.2E-06 4.8E-11 91.7 15.0 194 156-365 14-219 (484)
71 PRK14962 DNA polymerase III su 98.5 3.5E-06 7.7E-11 91.7 16.6 190 156-372 10-223 (472)
72 PRK09112 DNA polymerase III su 98.5 1E-05 2.2E-10 84.8 19.0 199 156-368 19-240 (351)
73 cd00009 AAA The AAA+ (ATPases 98.5 1.6E-06 3.4E-11 79.4 11.3 60 163-224 1-60 (151)
74 PLN03150 hypothetical protein; 98.4 4.5E-07 9.8E-12 103.2 9.1 102 576-678 419-525 (623)
75 TIGR02903 spore_lon_C ATP-depe 98.4 5.1E-06 1.1E-10 93.9 17.2 205 157-371 151-398 (615)
76 PRK07994 DNA polymerase III su 98.4 4.9E-06 1.1E-10 92.9 16.4 197 156-368 12-220 (647)
77 PRK08691 DNA polymerase III su 98.4 4.9E-06 1.1E-10 92.5 15.7 185 156-367 12-219 (709)
78 PF13191 AAA_16: AAA ATPase do 98.4 1.2E-06 2.5E-11 84.1 9.3 74 161-236 1-82 (185)
79 PRK07940 DNA polymerase III su 98.4 7.7E-06 1.7E-10 86.9 16.0 172 159-367 4-212 (394)
80 PRK09376 rho transcription ter 98.4 1.3E-06 2.9E-11 90.2 9.7 101 172-273 159-268 (416)
81 PRK14964 DNA polymerase III su 98.4 9.7E-06 2.1E-10 87.9 16.6 183 156-365 9-214 (491)
82 PRK07471 DNA polymerase III su 98.4 1.8E-05 3.8E-10 83.5 17.8 200 156-368 15-238 (365)
83 COG4886 Leucine-rich repeat (L 98.4 3.6E-07 7.8E-12 99.1 5.2 157 547-717 114-272 (394)
84 PRK13341 recombination factor 98.4 4.9E-06 1.1E-10 94.9 14.4 175 156-365 24-214 (725)
85 PF05621 TniB: Bacterial TniB 98.4 2.1E-05 4.6E-10 78.6 17.1 192 167-367 44-260 (302)
86 PRK05896 DNA polymerase III su 98.4 9.2E-06 2E-10 89.4 15.8 199 156-370 12-223 (605)
87 PRK14951 DNA polymerase III su 98.3 9E-06 2E-10 90.6 15.9 199 156-367 12-224 (618)
88 TIGR02397 dnaX_nterm DNA polym 98.3 1.3E-05 2.9E-10 85.5 16.6 186 156-369 10-219 (355)
89 PRK14955 DNA polymerase III su 98.3 8.4E-06 1.8E-10 87.7 14.7 202 156-366 12-226 (397)
90 PRK08084 DNA replication initi 98.3 2.1E-05 4.5E-10 78.2 16.4 166 168-368 32-209 (235)
91 TIGR00678 holB DNA polymerase 98.3 1.1E-05 2.3E-10 77.5 13.8 160 171-364 3-187 (188)
92 PRK08727 hypothetical protein; 98.3 1.3E-05 2.8E-10 79.5 14.6 170 160-365 19-201 (233)
93 PRK14958 DNA polymerase III su 98.3 1E-05 2.2E-10 89.2 14.8 184 156-366 12-218 (509)
94 PF13855 LRR_8: Leucine rich r 98.3 6.1E-07 1.3E-11 68.4 3.7 56 576-631 2-60 (61)
95 KOG3207 Beta-tubulin folding c 98.3 1E-07 2.3E-12 97.2 -0.7 79 574-652 196-280 (505)
96 PRK09087 hypothetical protein; 98.3 1.6E-05 3.4E-10 78.3 14.4 146 180-370 43-197 (226)
97 TIGR01242 26Sp45 26S proteasom 98.3 1.2E-05 2.6E-10 85.7 14.3 179 158-362 120-328 (364)
98 PLN03150 hypothetical protein; 98.3 1.9E-06 4.2E-11 98.1 8.7 108 551-660 420-532 (623)
99 KOG1859 Leucine-rich repeat pr 98.3 8.8E-09 1.9E-13 110.7 -9.5 176 526-712 108-291 (1096)
100 PRK09111 DNA polymerase III su 98.3 2.1E-05 4.6E-10 87.9 16.3 200 156-368 20-233 (598)
101 PRK14970 DNA polymerase III su 98.3 3.3E-05 7.2E-10 82.7 17.3 183 156-365 13-206 (367)
102 PRK07764 DNA polymerase III su 98.3 2.1E-05 4.5E-10 91.0 16.6 183 156-365 11-218 (824)
103 PRK14959 DNA polymerase III su 98.3 2.3E-05 5E-10 86.8 16.2 187 156-373 12-226 (624)
104 PF00308 Bac_DnaA: Bacterial d 98.2 1.6E-05 3.5E-10 77.9 13.3 163 181-368 34-208 (219)
105 PRK14969 DNA polymerase III su 98.2 1.5E-05 3.3E-10 88.3 14.7 186 156-368 12-221 (527)
106 PF13855 LRR_8: Leucine rich r 98.2 7.7E-07 1.7E-11 67.8 3.1 57 621-678 2-59 (61)
107 PF14516 AAA_35: AAA-like doma 98.2 0.00038 8.2E-09 72.9 24.2 211 157-375 8-246 (331)
108 PRK03992 proteasome-activating 98.2 1.3E-05 2.9E-10 85.8 13.3 178 159-362 130-337 (389)
109 PRK14954 DNA polymerase III su 98.2 4E-05 8.7E-10 85.9 17.4 199 156-363 12-223 (620)
110 TIGR00767 rho transcription te 98.2 5.1E-06 1.1E-10 86.4 9.1 94 179-273 166-267 (415)
111 PRK14952 DNA polymerase III su 98.2 5.1E-05 1.1E-09 84.4 17.4 186 156-372 9-224 (584)
112 KOG0989 Replication factor C, 98.2 2E-05 4.3E-10 77.5 12.2 190 156-367 32-229 (346)
113 PRK14971 DNA polymerase III su 98.2 4.5E-05 9.7E-10 86.0 16.8 182 157-366 14-220 (614)
114 TIGR03345 VI_ClpV1 type VI sec 98.2 2.3E-05 5E-10 91.7 14.9 184 156-362 183-390 (852)
115 KOG3665 ZYG-1-like serine/thre 98.1 1.6E-06 3.5E-11 98.3 4.1 135 575-712 122-262 (699)
116 PRK05642 DNA replication initi 98.1 8.1E-05 1.8E-09 73.9 15.7 154 181-370 45-210 (234)
117 PRK06305 DNA polymerase III su 98.1 9.2E-05 2E-09 80.6 17.4 185 156-368 13-223 (451)
118 PRK08451 DNA polymerase III su 98.1 7.6E-05 1.6E-09 81.8 16.7 186 156-368 10-218 (535)
119 TIGR02881 spore_V_K stage V sp 98.1 2.4E-05 5.2E-10 79.3 12.1 155 160-339 6-192 (261)
120 PRK07133 DNA polymerase III su 98.1 6.7E-05 1.4E-09 84.5 16.4 182 156-368 14-220 (725)
121 KOG2227 Pre-initiation complex 98.1 0.00033 7.2E-09 73.0 19.9 199 157-362 147-362 (529)
122 TIGR02639 ClpA ATP-dependent C 98.1 4E-05 8.7E-10 89.1 15.1 160 157-338 179-358 (731)
123 KOG2543 Origin recognition com 98.1 3.4E-05 7.4E-10 78.1 12.0 170 160-337 6-192 (438)
124 PHA02544 44 clamp loader, smal 98.1 3.5E-05 7.7E-10 80.7 12.8 150 156-337 17-172 (316)
125 PRK14953 DNA polymerase III su 98.1 0.00011 2.4E-09 80.5 16.9 183 156-369 12-221 (486)
126 PRK08903 DnaA regulatory inact 98.1 3.6E-05 7.7E-10 76.4 11.6 164 169-372 29-203 (227)
127 PRK14950 DNA polymerase III su 98.1 0.0001 2.3E-09 83.3 16.7 198 156-368 12-221 (585)
128 COG1222 RPT1 ATP-dependent 26S 98.0 0.0001 2.2E-09 74.2 14.2 205 158-386 149-391 (406)
129 CHL00095 clpC Clp protease ATP 98.0 6.1E-05 1.3E-09 88.7 15.0 180 159-360 178-379 (821)
130 KOG3665 ZYG-1-like serine/thre 98.0 2.7E-06 5.8E-11 96.6 3.3 147 526-674 121-281 (699)
131 PRK11331 5-methylcytosine-spec 98.0 2.6E-05 5.6E-10 82.6 10.2 108 160-273 175-284 (459)
132 PRK14087 dnaA chromosomal repl 98.0 7.1E-05 1.5E-09 81.5 13.8 168 182-371 142-322 (450)
133 PRK05563 DNA polymerase III su 98.0 0.00021 4.7E-09 79.9 16.9 195 156-366 12-218 (559)
134 PRK14948 DNA polymerase III su 98.0 0.00024 5.1E-09 80.2 17.1 199 156-368 12-222 (620)
135 PRK06647 DNA polymerase III su 98.0 0.00026 5.7E-09 78.9 17.2 196 156-367 12-219 (563)
136 COG2255 RuvB Holliday junction 97.9 0.0026 5.7E-08 62.3 21.4 179 156-371 22-226 (332)
137 PF12799 LRR_4: Leucine Rich r 97.9 9.9E-06 2.1E-10 56.5 3.7 37 576-612 2-38 (44)
138 KOG2120 SCF ubiquitin ligase, 97.9 5.5E-07 1.2E-11 87.4 -3.7 58 618-678 311-373 (419)
139 PTZ00454 26S protease regulato 97.9 0.00012 2.5E-09 78.2 13.3 179 158-362 143-351 (398)
140 CHL00181 cbbX CbbX; Provisiona 97.9 0.00023 4.9E-09 72.8 14.7 133 182-339 60-210 (287)
141 KOG0531 Protein phosphatase 1, 97.9 2.6E-06 5.5E-11 92.7 0.0 104 572-678 92-196 (414)
142 PRK14965 DNA polymerase III su 97.9 0.00022 4.8E-09 80.2 15.0 201 156-372 12-225 (576)
143 TIGR02880 cbbX_cfxQ probable R 97.9 9.9E-05 2.1E-09 75.5 11.2 132 183-339 60-209 (284)
144 TIGR03689 pup_AAA proteasome A 97.9 0.00033 7.2E-09 76.4 15.8 164 157-340 179-380 (512)
145 PTZ00361 26 proteosome regulat 97.9 0.00032 6.9E-09 75.5 15.1 179 158-362 181-389 (438)
146 KOG1644 U2-associated snRNP A' 97.8 1.9E-05 4.1E-10 72.9 4.8 75 577-652 44-122 (233)
147 PRK07399 DNA polymerase III su 97.8 0.00078 1.7E-08 69.7 16.7 195 160-368 4-221 (314)
148 PRK14088 dnaA chromosomal repl 97.8 0.00028 6E-09 76.8 13.9 161 181-366 130-303 (440)
149 TIGR03346 chaperone_ClpB ATP-d 97.8 0.00039 8.5E-09 82.2 16.1 159 157-338 170-349 (852)
150 TIGR00362 DnaA chromosomal rep 97.8 0.00025 5.4E-09 76.9 13.5 160 181-365 136-307 (405)
151 PF12799 LRR_4: Leucine Rich r 97.8 3.4E-05 7.3E-10 53.9 4.3 32 621-652 2-33 (44)
152 PRK00149 dnaA chromosomal repl 97.8 0.00024 5.3E-09 78.0 12.9 161 181-366 148-320 (450)
153 PRK05707 DNA polymerase III su 97.8 0.00081 1.7E-08 70.0 15.8 152 181-368 22-203 (328)
154 KOG1859 Leucine-rich repeat pr 97.7 1.5E-06 3.3E-11 94.0 -4.5 107 571-680 183-291 (1096)
155 PRK10865 protein disaggregatio 97.7 0.00033 7.1E-09 82.6 14.0 159 157-338 175-354 (857)
156 PRK06620 hypothetical protein; 97.7 0.00017 3.7E-09 70.3 9.4 136 182-365 45-186 (214)
157 PF05673 DUF815: Protein of un 97.7 0.0013 2.8E-08 63.9 15.1 53 156-208 23-79 (249)
158 KOG0531 Protein phosphatase 1, 97.7 7.4E-06 1.6E-10 89.1 -0.3 79 573-652 116-195 (414)
159 TIGR01241 FtsH_fam ATP-depende 97.7 0.00081 1.8E-08 74.8 15.7 180 157-362 52-260 (495)
160 PRK11034 clpA ATP-dependent Cl 97.7 7.3E-05 1.6E-09 85.9 6.8 158 159-338 185-362 (758)
161 COG1373 Predicted ATPase (AAA+ 97.7 0.00052 1.1E-08 73.6 12.9 166 164-367 21-191 (398)
162 PRK14086 dnaA chromosomal repl 97.6 0.00088 1.9E-08 74.2 14.8 159 182-365 315-485 (617)
163 PF00004 AAA: ATPase family as 97.6 0.00016 3.5E-09 64.7 6.6 69 184-273 1-70 (132)
164 COG3267 ExeA Type II secretory 97.6 0.0051 1.1E-07 59.6 16.6 194 169-372 40-249 (269)
165 PRK15386 type III secretion pr 97.5 0.00019 4.1E-09 75.3 7.4 83 547-642 50-137 (426)
166 KOG0733 Nuclear AAA ATPase (VC 97.5 0.0024 5.2E-08 68.8 15.5 181 159-362 189-396 (802)
167 PRK12422 chromosomal replicati 97.5 0.0011 2.4E-08 72.0 13.6 153 182-361 142-306 (445)
168 TIGR00602 rad24 checkpoint pro 97.5 0.00047 1E-08 77.3 10.8 205 156-372 80-327 (637)
169 PRK08058 DNA polymerase III su 97.5 0.0019 4.2E-08 67.6 14.7 146 162-337 7-181 (329)
170 PRK15386 type III secretion pr 97.5 0.00037 8.1E-09 73.2 8.6 130 526-677 51-186 (426)
171 PRK08769 DNA polymerase III su 97.5 0.0044 9.5E-08 64.0 16.3 173 167-368 11-208 (319)
172 CHL00176 ftsH cell division pr 97.5 0.002 4.3E-08 73.0 14.9 175 160-360 183-386 (638)
173 PRK08118 topology modulation p 97.5 6.9E-05 1.5E-09 70.1 2.8 35 182-216 2-37 (167)
174 smart00382 AAA ATPases associa 97.5 0.00044 9.6E-09 62.4 8.1 90 182-275 3-92 (148)
175 PF10443 RNA12: RNA12 protein; 97.5 0.0086 1.9E-07 62.9 18.1 203 165-385 1-297 (431)
176 KOG1644 U2-associated snRNP A' 97.4 0.00023 5E-09 66.0 5.8 102 527-630 42-150 (233)
177 KOG0733 Nuclear AAA ATPase (VC 97.4 0.0035 7.7E-08 67.5 15.2 140 180-340 544-694 (802)
178 PRK08181 transposase; Validate 97.4 0.0036 7.7E-08 63.1 14.7 79 174-273 101-179 (269)
179 KOG1909 Ran GTPase-activating 97.4 3.9E-05 8.5E-10 76.7 0.4 136 573-712 155-310 (382)
180 PRK08116 hypothetical protein; 97.4 0.00055 1.2E-08 69.3 8.6 74 182-271 115-188 (268)
181 KOG0991 Replication factor C, 97.4 0.0004 8.6E-09 65.6 6.8 103 156-273 23-125 (333)
182 CHL00195 ycf46 Ycf46; Provisio 97.4 0.0026 5.6E-08 69.7 14.2 178 159-362 227-429 (489)
183 PRK06871 DNA polymerase III su 97.4 0.0073 1.6E-07 62.5 16.7 176 169-365 11-200 (325)
184 KOG0731 AAA+-type ATPase conta 97.4 0.0029 6.3E-08 71.1 14.4 181 160-365 311-521 (774)
185 PRK06090 DNA polymerase III su 97.4 0.012 2.6E-07 60.7 18.0 164 168-368 11-201 (319)
186 PRK12608 transcription termina 97.4 0.002 4.4E-08 67.0 12.2 104 169-273 120-232 (380)
187 TIGR02639 ClpA ATP-dependent C 97.3 0.0048 1E-07 72.0 16.6 102 161-273 455-565 (731)
188 COG1223 Predicted ATPase (AAA+ 97.3 0.003 6.5E-08 60.9 11.9 178 159-361 120-318 (368)
189 COG0466 Lon ATP-dependent Lon 97.3 0.0026 5.7E-08 70.1 12.7 161 163-338 326-508 (782)
190 PRK10536 hypothetical protein; 97.3 0.0011 2.3E-08 65.3 8.6 56 159-216 54-109 (262)
191 TIGR01243 CDC48 AAA family ATP 97.3 0.0071 1.5E-07 70.8 16.9 178 159-362 452-657 (733)
192 TIGR02640 gas_vesic_GvpN gas v 97.3 0.0062 1.4E-07 61.6 14.4 58 166-230 8-65 (262)
193 PHA00729 NTP-binding motif con 97.2 0.0017 3.7E-08 62.8 9.6 36 171-206 7-42 (226)
194 COG0593 DnaA ATPase involved i 97.2 0.0041 8.8E-08 65.6 13.0 135 180-339 112-258 (408)
195 KOG0739 AAA+-type ATPase [Post 97.2 0.0038 8.3E-08 61.3 11.7 178 161-362 134-335 (439)
196 PF13177 DNA_pol3_delta2: DNA 97.2 0.0023 5.1E-08 59.4 10.1 137 164-326 1-162 (162)
197 KOG2120 SCF ubiquitin ligase, 97.2 3.2E-05 6.9E-10 75.5 -2.7 175 527-710 185-373 (419)
198 PRK07993 DNA polymerase III su 97.2 0.01 2.3E-07 61.9 15.6 164 168-365 10-201 (334)
199 KOG0730 AAA+-type ATPase [Post 97.2 0.0057 1.2E-07 66.8 13.8 180 157-362 431-637 (693)
200 TIGR02902 spore_lonB ATP-depen 97.2 0.0053 1.1E-07 68.6 14.2 49 157-205 62-110 (531)
201 KOG1909 Ran GTPase-activating 97.2 0.0004 8.8E-09 69.7 4.5 162 547-713 90-283 (382)
202 KOG4579 Leucine-rich repeat (L 97.1 3.9E-05 8.5E-10 66.3 -2.5 75 564-638 66-141 (177)
203 PRK07261 topology modulation p 97.1 0.0016 3.4E-08 61.3 7.9 34 183-216 2-36 (171)
204 PRK06964 DNA polymerase III su 97.1 0.019 4E-07 60.0 16.2 103 249-368 116-225 (342)
205 COG2812 DnaX DNA polymerase II 97.1 0.0043 9.3E-08 67.5 11.7 192 156-363 12-215 (515)
206 PF04665 Pox_A32: Poxvirus A32 97.1 0.0031 6.8E-08 61.7 9.4 37 182-220 14-50 (241)
207 TIGR01243 CDC48 AAA family ATP 97.0 0.012 2.5E-07 69.1 15.3 176 159-364 177-383 (733)
208 PRK04132 replication factor C 97.0 0.011 2.4E-07 68.5 14.6 157 187-368 570-731 (846)
209 PRK12377 putative replication 97.0 0.0035 7.6E-08 62.3 9.3 75 180-272 100-174 (248)
210 KOG2123 Uncharacterized conser 97.0 7.1E-05 1.5E-09 72.4 -2.5 100 574-674 18-123 (388)
211 TIGR00763 lon ATP-dependent pr 97.0 0.0069 1.5E-07 71.1 13.2 46 161-206 321-372 (775)
212 KOG4579 Leucine-rich repeat (L 97.0 0.00016 3.4E-09 62.7 -0.4 90 571-661 49-140 (177)
213 PF00448 SRP54: SRP54-type pro 97.0 0.0047 1E-07 59.3 9.6 88 181-270 1-92 (196)
214 PRK10787 DNA-binding ATP-depen 97.0 0.01 2.2E-07 69.2 14.1 165 161-338 323-506 (784)
215 TIGR02237 recomb_radB DNA repa 97.0 0.0046 9.9E-08 60.4 9.8 89 180-272 11-108 (209)
216 KOG2228 Origin recognition com 96.9 0.012 2.6E-07 59.2 12.3 169 160-339 24-220 (408)
217 cd01123 Rad51_DMC1_radA Rad51_ 96.9 0.0051 1.1E-07 61.3 10.0 92 180-272 18-126 (235)
218 KOG2739 Leucine-rich acidic nu 96.9 0.00043 9.3E-09 67.0 1.8 57 596-653 63-126 (260)
219 PF13207 AAA_17: AAA domain; P 96.9 0.00093 2E-08 58.8 3.8 23 183-205 1-23 (121)
220 KOG2982 Uncharacterized conser 96.9 0.00058 1.3E-08 66.9 2.5 23 690-712 239-261 (418)
221 smart00763 AAA_PrkA PrkA AAA d 96.8 0.002 4.2E-08 66.8 5.9 47 161-207 52-104 (361)
222 COG0542 clpA ATP-binding subun 96.8 0.0032 7E-08 71.3 8.0 161 157-338 167-346 (786)
223 PF07693 KAP_NTPase: KAP famil 96.8 0.063 1.4E-06 56.4 17.6 43 166-208 2-47 (325)
224 KOG1969 DNA replication checkp 96.8 0.0026 5.6E-08 70.0 6.7 75 180-273 325-399 (877)
225 COG0470 HolB ATPase involved i 96.8 0.016 3.5E-07 60.8 12.8 140 162-326 3-169 (325)
226 COG1484 DnaC DNA replication p 96.8 0.007 1.5E-07 60.6 9.4 81 172-272 98-178 (254)
227 TIGR03345 VI_ClpV1 type VI sec 96.7 0.0032 7E-08 74.1 7.8 106 160-273 566-680 (852)
228 PF01695 IstB_IS21: IstB-like 96.7 0.0026 5.7E-08 60.1 5.7 75 180-273 46-120 (178)
229 KOG0736 Peroxisome assembly fa 96.7 0.0085 1.8E-07 66.4 10.1 95 158-273 670-776 (953)
230 KOG2035 Replication factor C, 96.7 0.052 1.1E-06 53.2 14.2 207 160-390 13-261 (351)
231 KOG0728 26S proteasome regulat 96.7 0.02 4.3E-07 54.9 10.9 156 162-338 149-331 (404)
232 KOG2739 Leucine-rich acidic nu 96.7 0.0012 2.6E-08 64.0 2.9 83 595-679 40-127 (260)
233 PRK06696 uridine kinase; Valid 96.7 0.0029 6.4E-08 62.4 5.7 44 164-207 2-48 (223)
234 KOG0734 AAA+-type ATPase conta 96.6 0.005 1.1E-07 65.3 7.5 88 165-273 312-408 (752)
235 TIGR02238 recomb_DMC1 meiotic 96.6 0.009 2E-07 61.7 9.4 91 180-271 95-201 (313)
236 KOG2004 Mitochondrial ATP-depe 96.6 0.025 5.3E-07 62.5 12.8 97 162-273 413-517 (906)
237 COG0464 SpoVK ATPases of the A 96.6 0.015 3.3E-07 64.9 11.9 157 180-360 275-445 (494)
238 PRK07952 DNA replication prote 96.6 0.015 3.3E-07 57.6 10.5 89 168-273 84-174 (244)
239 PRK05541 adenylylsulfate kinas 96.6 0.0082 1.8E-07 56.8 8.2 36 180-217 6-41 (176)
240 TIGR02012 tigrfam_recA protein 96.6 0.01 2.2E-07 61.1 9.2 86 180-272 54-144 (321)
241 PRK14722 flhF flagellar biosyn 96.6 0.011 2.5E-07 62.0 9.8 88 181-271 137-225 (374)
242 PRK11034 clpA ATP-dependent Cl 96.6 0.0051 1.1E-07 71.0 7.9 102 161-273 459-569 (758)
243 PRK10865 protein disaggregatio 96.6 0.019 4.2E-07 67.9 12.8 105 161-273 569-682 (857)
244 cd01393 recA_like RecA is a b 96.6 0.012 2.6E-07 58.2 9.6 55 180-235 18-76 (226)
245 KOG0729 26S proteasome regulat 96.6 0.019 4E-07 55.6 10.1 130 159-309 176-328 (435)
246 KOG0743 AAA+-type ATPase [Post 96.6 0.35 7.5E-06 51.2 20.2 161 182-375 236-417 (457)
247 KOG1514 Origin recognition com 96.5 0.096 2.1E-06 58.0 16.6 200 161-371 397-624 (767)
248 COG1102 Cmk Cytidylate kinase 96.5 0.0091 2E-07 53.6 7.1 45 183-240 2-46 (179)
249 CHL00095 clpC Clp protease ATP 96.5 0.01 2.2E-07 70.2 9.8 106 160-273 509-623 (821)
250 cd00983 recA RecA is a bacter 96.5 0.013 2.9E-07 60.3 9.3 86 180-272 54-144 (325)
251 TIGR03346 chaperone_ClpB ATP-d 96.5 0.008 1.7E-07 71.3 8.7 105 161-273 566-679 (852)
252 TIGR03499 FlhF flagellar biosy 96.5 0.015 3.3E-07 59.4 9.6 88 180-270 193-281 (282)
253 cd01120 RecA-like_NTPases RecA 96.5 0.02 4.4E-07 53.0 9.9 40 183-224 1-40 (165)
254 PRK08939 primosomal protein Dn 96.5 0.015 3.3E-07 59.9 9.6 91 164-273 135-229 (306)
255 KOG2123 Uncharacterized conser 96.4 0.00027 5.8E-09 68.6 -3.0 98 547-649 17-123 (388)
256 PRK09361 radB DNA repair and r 96.4 0.015 3.3E-07 57.5 9.3 46 180-228 22-67 (225)
257 PF08423 Rad51: Rad51; InterP 96.4 0.022 4.7E-07 57.3 10.4 90 181-271 38-143 (256)
258 PRK09354 recA recombinase A; P 96.4 0.015 3.2E-07 60.5 9.3 86 180-272 59-149 (349)
259 PF05659 RPW8: Arabidopsis bro 96.4 0.043 9.4E-07 49.5 11.0 106 10-130 8-113 (147)
260 KOG0727 26S proteasome regulat 96.4 0.014 3.1E-07 55.9 8.2 128 161-309 156-306 (408)
261 cd01133 F1-ATPase_beta F1 ATP 96.4 0.031 6.7E-07 56.0 11.0 93 180-273 68-175 (274)
262 PRK06526 transposase; Provisio 96.4 0.0088 1.9E-07 59.9 7.1 74 181-273 98-171 (254)
263 KOG0735 AAA+-type ATPase [Post 96.4 0.029 6.3E-07 61.8 11.3 160 181-361 431-608 (952)
264 PLN00020 ribulose bisphosphate 96.3 0.015 3.3E-07 60.0 8.6 29 179-207 146-174 (413)
265 PRK08699 DNA polymerase III su 96.3 0.029 6.3E-07 58.4 10.9 59 297-364 143-202 (325)
266 PLN03187 meiotic recombination 96.3 0.022 4.8E-07 59.4 9.9 91 180-271 125-231 (344)
267 PRK04301 radA DNA repair and r 96.3 0.025 5.3E-07 59.1 10.4 58 180-238 101-162 (317)
268 PRK12724 flagellar biosynthesi 96.3 0.016 3.4E-07 61.5 8.7 85 181-270 223-308 (432)
269 PTZ00494 tuzin-like protein; P 96.3 0.14 3.1E-06 53.8 15.2 164 155-338 366-544 (664)
270 PRK04296 thymidine kinase; Pro 96.3 0.0071 1.5E-07 57.9 5.6 112 182-309 3-118 (190)
271 KOG0741 AAA+-type ATPase [Post 96.2 0.056 1.2E-06 57.6 12.3 165 180-372 537-716 (744)
272 PRK09270 nucleoside triphospha 96.2 0.036 7.8E-07 54.9 10.6 30 179-208 31-60 (229)
273 PRK11889 flhF flagellar biosyn 96.2 0.042 9.1E-07 57.6 11.1 88 180-271 240-330 (436)
274 PRK10733 hflB ATP-dependent me 96.2 0.06 1.3E-06 61.8 13.5 153 182-360 186-355 (644)
275 PTZ00301 uridine kinase; Provi 96.2 0.015 3.2E-07 56.4 7.2 26 181-206 3-28 (210)
276 PRK06921 hypothetical protein; 96.2 0.028 6.1E-07 56.8 9.5 39 180-219 116-154 (266)
277 TIGR02236 recomb_radA DNA repa 96.2 0.033 7.2E-07 58.0 10.4 58 180-238 94-155 (310)
278 KOG0735 AAA+-type ATPase [Post 96.2 0.15 3.3E-06 56.4 15.3 154 182-364 702-872 (952)
279 PRK07132 DNA polymerase III su 96.1 0.19 4.1E-06 51.5 15.5 166 170-367 6-184 (299)
280 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.046 9.9E-07 54.5 10.9 49 180-232 20-68 (237)
281 PLN03186 DNA repair protein RA 96.1 0.024 5.2E-07 59.2 9.2 59 180-239 122-184 (342)
282 PF07728 AAA_5: AAA domain (dy 96.1 0.01 2.2E-07 53.6 5.8 75 184-273 2-77 (139)
283 PRK12727 flagellar biosynthesi 96.1 0.042 9E-07 59.9 11.1 89 180-271 349-438 (559)
284 PRK08533 flagellar accessory p 96.1 0.037 7.9E-07 54.8 10.0 53 180-237 23-75 (230)
285 COG1618 Predicted nucleotide k 96.1 0.0081 1.8E-07 53.9 4.7 30 182-212 6-35 (179)
286 COG2884 FtsE Predicted ATPase 96.1 0.022 4.8E-07 52.7 7.6 35 180-217 27-61 (223)
287 cd03115 SRP The signal recogni 96.1 0.028 6.1E-07 53.0 8.9 26 183-208 2-27 (173)
288 COG0542 clpA ATP-binding subun 96.1 0.015 3.3E-07 66.0 8.0 105 160-273 491-605 (786)
289 PRK09183 transposase/IS protei 96.1 0.027 5.9E-07 56.7 9.0 27 181-207 102-128 (259)
290 PRK00771 signal recognition pa 96.0 0.038 8.3E-07 59.7 10.3 88 180-271 94-185 (437)
291 PRK15455 PrkA family serine pr 96.0 0.0098 2.1E-07 65.0 5.7 47 161-207 77-129 (644)
292 TIGR02239 recomb_RAD51 DNA rep 96.0 0.029 6.3E-07 58.2 9.0 59 180-239 95-157 (316)
293 PRK06547 hypothetical protein; 96.0 0.01 2.2E-07 55.6 5.1 35 172-206 6-40 (172)
294 PF01583 APS_kinase: Adenylyls 96.0 0.0082 1.8E-07 54.7 4.2 36 181-218 2-37 (156)
295 COG0563 Adk Adenylate kinase a 95.9 0.016 3.5E-07 54.5 6.1 25 183-207 2-26 (178)
296 PF00485 PRK: Phosphoribulokin 95.9 0.0074 1.6E-07 58.1 3.8 25 183-207 1-25 (194)
297 PRK07667 uridine kinase; Provi 95.9 0.013 2.8E-07 56.4 5.4 37 171-207 5-43 (193)
298 KOG0737 AAA+-type ATPase [Post 95.9 0.18 4E-06 51.7 13.6 47 161-207 93-153 (386)
299 cd01394 radB RadB. The archaea 95.9 0.038 8.3E-07 54.3 8.9 43 180-224 18-60 (218)
300 PF00560 LRR_1: Leucine Rich R 95.9 0.0035 7.5E-08 36.4 0.9 21 621-641 1-21 (22)
301 PTZ00035 Rad51 protein; Provis 95.9 0.053 1.2E-06 56.8 10.3 92 180-272 117-224 (337)
302 PRK12723 flagellar biosynthesi 95.9 0.067 1.5E-06 56.8 11.2 89 180-271 173-264 (388)
303 PF13238 AAA_18: AAA domain; P 95.8 0.0079 1.7E-07 53.4 3.5 22 184-205 1-22 (129)
304 PRK05703 flhF flagellar biosyn 95.8 0.051 1.1E-06 58.8 10.3 87 181-270 221-308 (424)
305 PRK13531 regulatory ATPase Rav 95.8 0.014 2.9E-07 63.0 5.8 50 160-211 20-69 (498)
306 cd02025 PanK Pantothenate kina 95.8 0.044 9.5E-07 53.8 9.0 41 183-223 1-41 (220)
307 PRK14974 cell division protein 95.8 0.1 2.2E-06 54.4 11.7 57 180-239 139-197 (336)
308 cd01131 PilT Pilus retraction 95.8 0.019 4.1E-07 55.4 6.0 108 182-309 2-111 (198)
309 PRK06835 DNA replication prote 95.7 0.046 9.9E-07 56.9 9.2 38 181-220 183-220 (329)
310 COG1066 Sms Predicted ATP-depe 95.7 0.049 1.1E-06 56.6 9.0 86 181-272 93-179 (456)
311 KOG0738 AAA+-type ATPase [Post 95.7 0.034 7.4E-07 57.0 7.7 28 180-207 244-271 (491)
312 cd02019 NK Nucleoside/nucleoti 95.7 0.0094 2E-07 46.4 3.0 23 183-205 1-23 (69)
313 TIGR00959 ffh signal recogniti 95.7 0.072 1.6E-06 57.4 10.8 91 180-271 98-192 (428)
314 COG0465 HflB ATP-dependent Zn 95.7 0.066 1.4E-06 59.3 10.5 179 160-364 150-357 (596)
315 PF13671 AAA_33: AAA domain; P 95.7 0.0099 2.1E-07 54.0 3.6 24 183-206 1-24 (143)
316 cd02027 APSK Adenosine 5'-phos 95.7 0.054 1.2E-06 49.5 8.5 25 183-207 1-25 (149)
317 TIGR00554 panK_bact pantothena 95.7 0.07 1.5E-06 54.3 10.0 28 179-206 60-87 (290)
318 PRK06067 flagellar accessory p 95.7 0.079 1.7E-06 52.7 10.2 87 180-271 24-130 (234)
319 PRK10867 signal recognition pa 95.6 0.062 1.3E-06 57.9 9.9 58 180-239 99-158 (433)
320 PRK15429 formate hydrogenlyase 95.6 0.23 4.9E-06 57.9 15.2 61 160-222 376-438 (686)
321 PRK08233 hypothetical protein; 95.6 0.0099 2.2E-07 56.5 3.4 26 181-206 3-28 (182)
322 PF10236 DAP3: Mitochondrial r 95.6 0.77 1.7E-05 47.6 17.5 47 319-365 258-306 (309)
323 PF13481 AAA_25: AAA domain; P 95.6 0.053 1.2E-06 52.0 8.5 41 182-222 33-81 (193)
324 PF06309 Torsin: Torsin; Inte 95.6 0.16 3.5E-06 44.1 10.3 45 162-206 27-78 (127)
325 PRK05480 uridine/cytidine kina 95.6 0.012 2.7E-07 57.4 4.1 27 179-205 4-30 (209)
326 PRK04328 hypothetical protein; 95.6 0.07 1.5E-06 53.5 9.5 41 180-222 22-62 (249)
327 cd01121 Sms Sms (bacterial rad 95.6 0.052 1.1E-06 57.5 8.9 87 181-272 82-169 (372)
328 KOG3347 Predicted nucleotide k 95.6 0.025 5.4E-07 50.0 5.3 44 181-231 7-50 (176)
329 COG0541 Ffh Signal recognition 95.6 1.2 2.7E-05 47.0 18.5 58 180-240 99-158 (451)
330 COG1419 FlhF Flagellar GTP-bin 95.6 0.13 2.8E-06 53.9 11.4 73 169-241 187-264 (407)
331 COG1428 Deoxynucleoside kinase 95.6 0.022 4.7E-07 53.9 5.3 47 181-232 4-50 (216)
332 KOG1532 GTPase XAB1, interacts 95.5 0.016 3.5E-07 56.4 4.4 60 180-241 18-88 (366)
333 KOG0744 AAA+-type ATPase [Post 95.5 0.035 7.7E-07 55.5 6.9 28 181-208 177-204 (423)
334 COG1703 ArgK Putative periplas 95.5 0.022 4.7E-07 56.7 5.3 63 170-232 38-102 (323)
335 CHL00206 ycf2 Ycf2; Provisiona 95.5 0.12 2.6E-06 63.9 12.3 28 180-207 1629-1656(2281)
336 KOG2982 Uncharacterized conser 95.5 0.0046 1E-07 60.8 0.6 86 547-632 69-158 (418)
337 PF02562 PhoH: PhoH-like prote 95.5 0.021 4.6E-07 54.7 5.1 51 166-218 6-56 (205)
338 PRK06762 hypothetical protein; 95.5 0.014 3E-07 54.6 3.7 25 181-205 2-26 (166)
339 PRK12726 flagellar biosynthesi 95.5 0.091 2E-06 55.0 9.9 90 180-272 205-296 (407)
340 TIGR00235 udk uridine kinase. 95.4 0.014 3E-07 56.9 3.8 28 179-206 4-31 (207)
341 PF00154 RecA: recA bacterial 95.4 0.069 1.5E-06 54.9 9.0 86 181-273 53-143 (322)
342 PRK00889 adenylylsulfate kinas 95.4 0.067 1.5E-06 50.5 8.4 28 180-207 3-30 (175)
343 TIGR01360 aden_kin_iso1 adenyl 95.4 0.014 3.1E-07 55.8 3.8 26 180-205 2-27 (188)
344 PF08433 KTI12: Chromatin asso 95.4 0.026 5.7E-07 56.9 5.9 26 182-207 2-27 (270)
345 cd00561 CobA_CobO_BtuR ATP:cor 95.4 0.1 2.2E-06 47.9 9.1 116 182-308 3-139 (159)
346 cd01135 V_A-ATPase_B V/A-type 95.4 0.078 1.7E-06 53.1 8.9 94 180-273 68-178 (276)
347 TIGR01425 SRP54_euk signal rec 95.4 0.089 1.9E-06 56.4 9.9 57 180-238 99-156 (429)
348 PF03308 ArgK: ArgK protein; 95.4 0.023 4.9E-07 55.8 4.9 62 168-229 14-77 (266)
349 TIGR00064 ftsY signal recognit 95.4 0.12 2.7E-06 52.3 10.5 58 179-239 70-129 (272)
350 PF06745 KaiC: KaiC; InterPro 95.4 0.037 8E-07 54.7 6.6 90 180-273 18-127 (226)
351 PRK13765 ATP-dependent proteas 95.3 0.034 7.3E-07 62.9 7.0 79 157-239 28-106 (637)
352 TIGR03878 thermo_KaiC_2 KaiC d 95.3 0.088 1.9E-06 53.1 9.4 40 180-221 35-74 (259)
353 PF03205 MobB: Molybdopterin g 95.3 0.031 6.7E-07 50.4 5.4 39 182-221 1-39 (140)
354 PRK05439 pantothenate kinase; 95.3 0.13 2.9E-06 52.7 10.5 45 179-223 84-128 (311)
355 COG0194 Gmk Guanylate kinase [ 95.3 0.059 1.3E-06 50.0 7.1 25 181-205 4-28 (191)
356 PRK03839 putative kinase; Prov 95.3 0.016 3.4E-07 55.1 3.6 24 183-206 2-25 (180)
357 PF00910 RNA_helicase: RNA hel 95.3 0.014 3.1E-07 50.0 2.9 24 184-207 1-24 (107)
358 PRK06995 flhF flagellar biosyn 95.2 0.099 2.1E-06 57.0 9.7 60 181-240 256-316 (484)
359 KOG0652 26S proteasome regulat 95.2 0.29 6.3E-06 47.5 11.6 48 159-206 170-230 (424)
360 cd01124 KaiC KaiC is a circadi 95.2 0.07 1.5E-06 50.9 7.9 44 184-231 2-45 (187)
361 PF12775 AAA_7: P-loop contain 95.2 0.013 2.9E-07 59.3 2.9 88 170-272 23-111 (272)
362 COG0572 Udk Uridine kinase [Nu 95.2 0.018 4E-07 55.1 3.6 28 180-207 7-34 (218)
363 PRK14721 flhF flagellar biosyn 95.2 0.14 3.1E-06 54.8 10.7 61 181-241 191-252 (420)
364 TIGR01817 nifA Nif-specific re 95.1 0.16 3.5E-06 57.3 11.7 63 158-222 194-258 (534)
365 PF00006 ATP-synt_ab: ATP synt 95.1 0.077 1.7E-06 51.5 7.9 97 172-272 5-116 (215)
366 cd03281 ABC_MSH5_euk MutS5 hom 95.1 0.012 2.6E-07 57.5 2.3 24 181-204 29-52 (213)
367 TIGR00390 hslU ATP-dependent p 95.1 0.058 1.3E-06 57.0 7.4 47 161-207 13-73 (441)
368 COG3640 CooC CO dehydrogenase 95.1 0.044 9.5E-07 52.6 5.9 51 183-241 2-52 (255)
369 cd00544 CobU Adenosylcobinamid 95.1 0.088 1.9E-06 49.1 7.9 80 184-270 2-82 (169)
370 COG2607 Predicted ATPase (AAA+ 95.1 0.16 3.5E-06 48.9 9.5 52 157-208 57-112 (287)
371 TIGR02655 circ_KaiC circadian 95.1 0.091 2E-06 58.3 9.3 87 180-271 262-363 (484)
372 COG4608 AppF ABC-type oligopep 95.1 0.084 1.8E-06 52.1 7.9 90 180-273 38-139 (268)
373 COG5238 RNA1 Ran GTPase-activa 95.0 0.033 7.1E-07 54.3 4.9 20 695-714 209-228 (388)
374 PRK00625 shikimate kinase; Pro 95.0 0.02 4.3E-07 53.7 3.4 24 183-206 2-25 (173)
375 TIGR03305 alt_F1F0_F1_bet alte 95.0 0.089 1.9E-06 56.6 8.6 93 180-273 137-244 (449)
376 TIGR02974 phageshock_pspF psp 95.0 0.31 6.8E-06 51.0 12.6 43 163-205 2-46 (329)
377 PRK09519 recA DNA recombinatio 95.0 0.1 2.2E-06 60.0 9.4 86 180-272 59-149 (790)
378 COG0468 RecA RecA/RadA recombi 95.0 0.16 3.5E-06 51.2 9.8 88 180-271 59-151 (279)
379 KOG0726 26S proteasome regulat 95.0 0.11 2.5E-06 51.1 8.4 127 159-307 184-334 (440)
380 PRK14723 flhF flagellar biosyn 95.0 0.2 4.2E-06 57.5 11.6 60 181-240 185-245 (767)
381 PRK04040 adenylate kinase; Pro 94.9 0.024 5.2E-07 54.1 3.7 25 182-206 3-27 (188)
382 TIGR01359 UMP_CMP_kin_fam UMP- 94.9 0.019 4.1E-07 54.7 3.0 23 183-205 1-23 (183)
383 PRK00131 aroK shikimate kinase 94.9 0.027 5.8E-07 53.1 3.9 26 181-206 4-29 (175)
384 KOG1051 Chaperone HSP104 and r 94.9 0.16 3.5E-06 58.8 10.7 101 162-273 564-672 (898)
385 TIGR02858 spore_III_AA stage I 94.9 0.096 2.1E-06 52.9 8.0 116 178-309 108-231 (270)
386 PRK12597 F0F1 ATP synthase sub 94.9 0.09 1.9E-06 56.9 8.2 94 179-273 141-249 (461)
387 CHL00081 chlI Mg-protoporyphyr 94.9 0.036 7.8E-07 57.8 5.1 50 158-207 15-64 (350)
388 TIGR02030 BchI-ChlI magnesium 94.9 0.046 9.9E-07 57.1 5.8 47 159-205 3-49 (337)
389 PRK06002 fliI flagellum-specif 94.8 0.066 1.4E-06 57.5 7.0 91 180-273 164-266 (450)
390 PRK05022 anaerobic nitric oxid 94.8 0.56 1.2E-05 52.5 14.7 63 159-223 186-250 (509)
391 PRK10751 molybdopterin-guanine 94.8 0.033 7.2E-07 51.8 4.1 28 180-207 5-32 (173)
392 cd02023 UMPK Uridine monophosp 94.8 0.021 4.6E-07 55.2 2.9 23 183-205 1-23 (198)
393 PF00560 LRR_1: Leucine Rich R 94.8 0.01 2.3E-07 34.3 0.4 21 576-596 1-21 (22)
394 cd03247 ABCC_cytochrome_bd The 94.7 0.067 1.5E-06 50.6 6.2 27 180-206 27-53 (178)
395 PF13245 AAA_19: Part of AAA d 94.7 0.077 1.7E-06 42.1 5.4 26 180-205 9-34 (76)
396 PRK11823 DNA repair protein Ra 94.7 0.11 2.4E-06 56.7 8.5 87 181-272 80-167 (446)
397 PRK06851 hypothetical protein; 94.7 0.41 8.9E-06 50.3 12.2 44 178-222 211-254 (367)
398 TIGR01069 mutS2 MutS2 family p 94.6 0.056 1.2E-06 63.0 6.4 191 179-389 320-522 (771)
399 PRK12678 transcription termina 94.6 0.12 2.5E-06 56.6 8.3 90 179-272 414-514 (672)
400 cd02024 NRK1 Nicotinamide ribo 94.6 0.026 5.5E-07 53.6 3.0 23 183-205 1-23 (187)
401 COG4240 Predicted kinase [Gene 94.6 0.25 5.5E-06 47.0 9.4 83 178-261 47-133 (300)
402 cd02020 CMPK Cytidine monophos 94.6 0.027 5.8E-07 51.3 3.1 24 183-206 1-24 (147)
403 PRK09280 F0F1 ATP synthase sub 94.6 0.27 5.9E-06 53.1 11.0 94 179-273 142-250 (463)
404 TIGR00764 lon_rel lon-related 94.6 0.075 1.6E-06 60.3 7.2 76 159-238 17-92 (608)
405 COG0714 MoxR-like ATPases [Gen 94.6 0.077 1.7E-06 55.8 6.9 65 162-233 26-90 (329)
406 PF13086 AAA_11: AAA domain; P 94.6 0.067 1.5E-06 53.0 6.1 23 183-205 19-41 (236)
407 TIGR02322 phosphon_PhnN phosph 94.6 0.031 6.8E-07 53.0 3.5 25 182-206 2-26 (179)
408 PF03215 Rad17: Rad17 cell cyc 94.6 0.054 1.2E-06 59.9 5.8 60 156-219 15-79 (519)
409 cd03223 ABCD_peroxisomal_ALDP 94.6 0.092 2E-06 49.0 6.6 27 180-206 26-52 (166)
410 TIGR00150 HI0065_YjeE ATPase, 94.6 0.072 1.6E-06 47.2 5.4 28 180-207 21-48 (133)
411 PRK05917 DNA polymerase III su 94.5 0.64 1.4E-05 47.2 12.9 38 169-206 6-44 (290)
412 cd02028 UMPK_like Uridine mono 94.5 0.031 6.7E-07 52.9 3.3 25 183-207 1-25 (179)
413 cd00227 CPT Chloramphenicol (C 94.5 0.035 7.5E-07 52.4 3.6 25 182-206 3-27 (175)
414 PRK14529 adenylate kinase; Pro 94.5 0.094 2E-06 51.2 6.6 85 183-273 2-88 (223)
415 PRK06217 hypothetical protein; 94.5 0.029 6.4E-07 53.4 3.1 33 183-216 3-37 (183)
416 PF13306 LRR_5: Leucine rich r 94.5 0.1 2.2E-06 46.2 6.5 41 565-606 25-66 (129)
417 cd02021 GntK Gluconate kinase 94.5 0.028 6.1E-07 51.5 2.9 23 183-205 1-23 (150)
418 PTZ00088 adenylate kinase 1; P 94.5 0.043 9.3E-07 54.0 4.3 24 183-206 8-31 (229)
419 PRK13407 bchI magnesium chelat 94.5 0.054 1.2E-06 56.4 5.2 48 158-205 6-53 (334)
420 COG0003 ArsA Predicted ATPase 94.4 0.08 1.7E-06 54.6 6.3 49 181-231 2-50 (322)
421 TIGR00416 sms DNA repair prote 94.4 0.12 2.6E-06 56.5 8.1 88 180-272 93-181 (454)
422 COG0467 RAD55 RecA-superfamily 94.4 0.063 1.4E-06 54.4 5.5 54 179-237 21-74 (260)
423 TIGR00073 hypB hydrogenase acc 94.4 0.043 9.3E-07 53.4 4.1 32 175-206 16-47 (207)
424 PRK14530 adenylate kinase; Pro 94.4 0.037 8E-07 54.2 3.7 25 182-206 4-28 (215)
425 cd01125 repA Hexameric Replica 94.4 0.21 4.5E-06 49.8 9.1 24 183-206 3-26 (239)
426 PRK10416 signal recognition pa 94.4 0.36 7.7E-06 50.1 11.0 29 180-208 113-141 (318)
427 TIGR00708 cobA cob(I)alamin ad 94.4 0.25 5.5E-06 45.8 8.8 120 181-309 5-142 (173)
428 PRK05800 cobU adenosylcobinami 94.3 0.11 2.4E-06 48.6 6.5 47 183-235 3-49 (170)
429 PRK10463 hydrogenase nickel in 94.3 0.07 1.5E-06 53.9 5.4 36 172-207 95-130 (290)
430 PRK13947 shikimate kinase; Pro 94.3 0.038 8.3E-07 51.9 3.3 24 183-206 3-26 (171)
431 PRK13949 shikimate kinase; Pro 94.3 0.037 8E-07 51.8 3.2 24 183-206 3-26 (169)
432 PF08298 AAA_PrkA: PrkA AAA do 94.2 0.082 1.8E-06 54.4 5.8 77 160-241 61-150 (358)
433 PRK14527 adenylate kinase; Pro 94.2 0.048 1E-06 52.3 4.0 29 179-207 4-32 (191)
434 PF13504 LRR_7: Leucine rich r 94.2 0.03 6.5E-07 30.0 1.5 16 621-636 2-17 (17)
435 COG4088 Predicted nucleotide k 94.2 0.046 9.9E-07 51.2 3.5 27 182-208 2-28 (261)
436 COG0529 CysC Adenylylsulfate k 94.2 0.093 2E-06 48.0 5.4 32 177-208 19-50 (197)
437 PRK00409 recombination and DNA 94.2 0.2 4.4E-06 58.6 9.7 193 179-389 325-527 (782)
438 PRK08927 fliI flagellum-specif 94.2 0.33 7.2E-06 52.2 10.5 91 179-273 156-260 (442)
439 TIGR03263 guanyl_kin guanylate 94.2 0.037 7.9E-07 52.5 3.0 24 182-205 2-25 (180)
440 PF03266 NTPase_1: NTPase; In 94.2 0.074 1.6E-06 49.6 5.0 24 184-207 2-25 (168)
441 TIGR01650 PD_CobS cobaltochela 94.2 0.14 3E-06 52.7 7.3 63 161-230 46-108 (327)
442 PRK13695 putative NTPase; Prov 94.2 0.07 1.5E-06 50.3 4.9 34 183-217 2-35 (174)
443 PF07726 AAA_3: ATPase family 94.1 0.071 1.5E-06 46.5 4.4 24 184-207 2-25 (131)
444 TIGR01039 atpD ATP synthase, F 94.1 0.23 5.1E-06 53.4 9.2 94 179-273 141-249 (461)
445 TIGR01041 ATP_syn_B_arch ATP s 94.1 0.18 4E-06 54.6 8.5 94 180-273 140-250 (458)
446 TIGR00176 mobB molybdopterin-g 94.1 0.048 1E-06 50.1 3.6 33 183-216 1-33 (155)
447 COG1936 Predicted nucleotide k 94.1 0.04 8.7E-07 50.3 2.9 20 183-202 2-21 (180)
448 cd00464 SK Shikimate kinase (S 94.1 0.046 9.9E-07 50.3 3.4 23 184-206 2-24 (154)
449 PRK03846 adenylylsulfate kinas 94.1 0.078 1.7E-06 51.2 5.1 30 178-207 21-50 (198)
450 PF08477 Miro: Miro-like prote 94.1 0.047 1E-06 47.6 3.3 23 184-206 2-24 (119)
451 PF00625 Guanylate_kin: Guanyl 94.0 0.066 1.4E-06 50.9 4.5 36 181-218 2-37 (183)
452 TIGR01040 V-ATPase_V1_B V-type 94.0 0.2 4.4E-06 53.7 8.5 93 180-272 140-258 (466)
453 PRK05201 hslU ATP-dependent pr 94.0 0.13 2.8E-06 54.6 6.8 46 161-206 16-75 (443)
454 cd01122 GP4d_helicase GP4d_hel 94.0 0.42 9.2E-06 48.6 10.6 52 181-235 30-81 (271)
455 PRK00300 gmk guanylate kinase; 94.0 0.053 1.1E-06 52.7 3.8 26 180-205 4-29 (205)
456 PTZ00185 ATPase alpha subunit; 94.0 0.35 7.6E-06 52.5 10.0 95 179-273 187-301 (574)
457 COG1763 MobB Molybdopterin-gua 94.0 0.058 1.3E-06 49.5 3.7 29 181-209 2-30 (161)
458 PF03029 ATP_bind_1: Conserved 93.9 0.049 1.1E-06 54.1 3.5 33 186-220 1-33 (238)
459 cd00071 GMPK Guanosine monopho 93.9 0.042 9E-07 49.5 2.7 22 184-205 2-23 (137)
460 PRK13975 thymidylate kinase; P 93.9 0.052 1.1E-06 52.3 3.6 26 182-207 3-28 (196)
461 PRK08972 fliI flagellum-specif 93.9 0.31 6.8E-06 52.2 9.6 90 180-273 161-264 (444)
462 TIGR01313 therm_gnt_kin carboh 93.9 0.041 8.9E-07 51.2 2.7 22 184-205 1-22 (163)
463 PF02374 ArsA_ATPase: Anion-tr 93.9 0.097 2.1E-06 54.1 5.7 45 182-228 2-46 (305)
464 cd01132 F1_ATPase_alpha F1 ATP 93.9 0.18 3.8E-06 50.6 7.2 96 180-279 68-180 (274)
465 cd01134 V_A-ATPase_A V/A-type 93.9 0.56 1.2E-05 48.6 11.0 49 180-232 156-205 (369)
466 PRK12339 2-phosphoglycerate ki 93.9 0.057 1.2E-06 51.8 3.7 25 181-205 3-27 (197)
467 TIGR03498 FliI_clade3 flagella 93.9 0.25 5.5E-06 53.0 8.9 90 180-273 139-242 (418)
468 PRK05057 aroK shikimate kinase 93.9 0.059 1.3E-06 50.6 3.7 26 181-206 4-29 (172)
469 PRK08149 ATP synthase SpaL; Va 93.9 0.3 6.6E-06 52.4 9.4 90 180-273 150-253 (428)
470 cd02029 PRK_like Phosphoribulo 93.8 0.27 5.8E-06 48.9 8.3 25 183-207 1-25 (277)
471 COG1126 GlnQ ABC-type polar am 93.8 0.05 1.1E-06 51.6 3.0 37 180-219 27-63 (240)
472 PF01078 Mg_chelatase: Magnesi 93.8 0.1 2.3E-06 49.7 5.2 45 159-205 2-46 (206)
473 PRK09435 membrane ATPase/prote 93.8 0.16 3.4E-06 52.8 7.0 38 171-208 44-83 (332)
474 PF10923 DUF2791: P-loop Domai 93.8 0.72 1.6E-05 49.3 12.0 79 162-242 27-115 (416)
475 PF05970 PIF1: PIF1-like helic 93.8 0.15 3.4E-06 54.2 7.2 41 167-207 8-48 (364)
476 COG1224 TIP49 DNA helicase TIP 93.7 0.13 2.8E-06 52.4 5.9 53 159-211 38-95 (450)
477 cd01136 ATPase_flagellum-secre 93.7 0.34 7.4E-06 50.1 9.2 89 180-272 68-170 (326)
478 cd00984 DnaB_C DnaB helicase C 93.7 0.57 1.2E-05 46.7 10.9 51 181-234 13-63 (242)
479 PRK10078 ribose 1,5-bisphospho 93.7 0.052 1.1E-06 51.8 3.1 24 182-205 3-26 (186)
480 PRK07276 DNA polymerase III su 93.7 2.4 5.2E-05 43.2 15.1 68 260-336 103-173 (290)
481 KOG0924 mRNA splicing factor A 93.7 0.27 6E-06 54.0 8.6 124 170-309 362-512 (1042)
482 KOG2170 ATPase of the AAA+ sup 93.6 0.33 7.1E-06 48.5 8.4 98 162-273 84-190 (344)
483 PF03193 DUF258: Protein of un 93.6 0.11 2.3E-06 47.7 4.8 34 169-205 26-59 (161)
484 COG1124 DppF ABC-type dipeptid 93.6 0.057 1.2E-06 52.2 3.1 27 180-206 32-58 (252)
485 COG2019 AdkA Archaeal adenylat 93.6 0.073 1.6E-06 48.2 3.5 46 181-238 4-49 (189)
486 cd00820 PEPCK_HprK Phosphoenol 93.6 0.063 1.4E-06 45.5 3.0 22 181-202 15-36 (107)
487 TIGR00041 DTMP_kinase thymidyl 93.6 0.19 4.1E-06 48.3 6.8 26 182-207 4-29 (195)
488 cd01672 TMPK Thymidine monopho 93.6 0.2 4.3E-06 48.2 7.0 25 183-207 2-26 (200)
489 PF13604 AAA_30: AAA domain; P 93.5 0.2 4.3E-06 48.2 6.8 31 178-208 15-45 (196)
490 PRK14737 gmk guanylate kinase; 93.5 0.065 1.4E-06 51.0 3.4 26 180-205 3-28 (186)
491 PLN02200 adenylate kinase fami 93.4 0.074 1.6E-06 52.7 3.8 26 180-205 42-67 (234)
492 KOG0740 AAA+-type ATPase [Post 93.4 1.8 3.9E-05 46.2 14.1 73 180-273 185-257 (428)
493 PRK11388 DNA-binding transcrip 93.4 0.72 1.6E-05 53.4 12.4 45 160-205 325-372 (638)
494 PRK00698 tmk thymidylate kinas 93.4 0.19 4.2E-06 48.7 6.6 26 182-207 4-29 (205)
495 PRK13948 shikimate kinase; Pro 93.4 0.085 1.8E-06 49.9 3.9 28 179-206 8-35 (182)
496 PRK15453 phosphoribulokinase; 93.4 0.09 2E-06 52.6 4.2 28 179-206 3-30 (290)
497 cd01983 Fer4_NifH The Fer4_Nif 93.4 0.085 1.8E-06 43.8 3.6 25 183-207 1-25 (99)
498 PRK13946 shikimate kinase; Pro 93.4 0.071 1.5E-06 50.8 3.4 26 181-206 10-35 (184)
499 TIGR02655 circ_KaiC circadian 93.4 0.38 8.1E-06 53.4 9.6 87 180-270 20-129 (484)
500 PRK05922 type III secretion sy 93.3 0.42 9E-06 51.4 9.3 91 179-273 155-259 (434)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-81 Score=711.50 Aligned_cols=654 Identities=29% Similarity=0.404 Sum_probs=507.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHhhhhcc----c-------------cc
Q 004895 38 IDGLKERVEELGQRRKRVKILVDQATEQGYEIFADVTEWLGKVEQFTQGYAKHIINDEDE----V-------------RK 100 (724)
Q Consensus 38 ~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~Wl~~l~~~~~~~~ed~ld~~~~----~-------------~~ 100 (724)
+.+.++.+..|+..|..++.+++|+++++.+ ...+..|...+++++|+ +++.++.+.- . +.
T Consensus 23 ~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~-~e~~~~~~~v~~~~~~~~~~l~~~~~~~~~ 100 (889)
T KOG4658|consen 23 LDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYL-AEDIIWLFLVEEIERKANDLLSTRSVERQR 100 (889)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhhhhHHHHHH
Confidence 5677889999999999999999999998764 78899999999999999 9998764210 0 00
Q ss_pred cccCCCC-CchhHHHHHhHHHHHHHHHHHHHHhcCCCcccccccc-CCCCCCcccCCCcccccccchHHHHHHHHHHhcC
Q 004895 101 PCFKGLS-PNLMSRYKLSKRAVEDAKYAEHLLATGSLLIVSNVSH-PPPPKMREFGDMKDYNIFNSRKKIFQDVIEALKD 178 (724)
Q Consensus 101 ~~~~~~~-~~~~~r~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gR~~~~~~l~~~L~~ 178 (724)
-|+...+ .....-+.+++++.++.+.++.+...+.|.. ++. ..++..++..|...... +|.+..++++.+.|.+
T Consensus 101 ~c~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~---~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~ 176 (889)
T KOG4658|consen 101 LCLCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEV---VGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLME 176 (889)
T ss_pred HhhhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceec---ccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhcc
Confidence 1111111 1222333445555555555555544444443 222 12222223333333333 8999999999999997
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh-hccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCch--hHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVM-EDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDL--IYHRAKQLCQ 255 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~--~~~~~~~l~~ 255 (724)
++..+++|+||||+||||||++++|+.. ++.+||.++||+||+.++..+++.+|++.++........ ..+.+..+.+
T Consensus 177 d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~ 256 (889)
T KOG4658|consen 177 DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLN 256 (889)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHH
Confidence 7779999999999999999999999998 899999999999999999999999999998874433221 2456667777
Q ss_pred HHhcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccchhhhhcCCCceEecCCCCHHHHHHHHH
Q 004895 256 RLKKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCIDMNSQKMFWIDALSEEEALQLFE 335 (724)
Q Consensus 256 ~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~ 335 (724)
.|. ++||||||||||+..+|+.++.|+|. ..+||||++|||+..|+...|++...++++.|+++|||+||+
T Consensus 257 ~L~-~krfllvLDDIW~~~dw~~I~~~~p~--------~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~ 327 (889)
T KOG4658|consen 257 LLE-GKRFLLVLDDIWEEVDWDKIGVPFPS--------RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQ 327 (889)
T ss_pred Hhc-cCceEEEEecccccccHHhcCCCCCC--------ccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHH
Confidence 776 69999999999999999999999998 788999999999999986668888999999999999999999
Q ss_pred HHhCCC--CCCCCchhHHHHHHHHhCCchhHHHHHHHHhcCC-CHHHHHHHHHHHhcCccccccCCCcccchhhHhhhhh
Q 004895 336 KIVGES--TKASDFRPLAEEIVGKCGGLPVALSTVANALKNK-SPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDF 412 (724)
Q Consensus 336 ~~~~~~--~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~ 412 (724)
+.++.. ...+.++++|++++++|+|+|||++++|+.|+.+ +.++|+++.+.+.+....+..+..+.++++|++||+.
T Consensus 328 ~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~ 407 (889)
T KOG4658|consen 328 KKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDN 407 (889)
T ss_pred HhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhh
Confidence 999854 3445589999999999999999999999999977 8889999999988875566556688999999999999
Q ss_pred cHHHHHHHHHhhccCCCCCcccHHHHHHHHhhcccccccccccccccHHHHHHHHHHHHHHHHhhcccccCC---CCCcc
Q 004895 413 LDDEAKSLFLLCGLHREGRPIHVHYLLRYVMGLRYDKGLGLFRNVYTLEAARNRVDALIDNLKASCLLLDGD---AEDEA 489 (724)
Q Consensus 413 L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~---~~~~~ 489 (724)
||+++|.||+|||+||+||.|+++.|+.+|+ ||||+++....+.+++.+++++.+|++++|++... ...+|
T Consensus 408 L~~~lK~CFLycalFPED~~I~~e~Li~yWi------aEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~ 481 (889)
T KOG4658|consen 408 LPEELKSCFLYCALFPEDYEIKKEKLIEYWI------AEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETV 481 (889)
T ss_pred hhHHHHHHHHhhccCCcccccchHHHHHHHH------hccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEE
Confidence 9999999999999999999999999999999 99999886556668888889999999999998654 44789
Q ss_pred hhhHHHHHHHHHHhh-----hcceeeccCcchhhhhHhhhhccCceEEeccCCCcccCCCcccCCCccEEEEeccccccc
Q 004895 490 KLHDVIHVVAASIAE-----EKLMFSIPNVVDFEREMEETIQKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTL 564 (724)
Q Consensus 490 ~mHdlv~d~a~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~ 564 (724)
+|||+|||+|.++|+ +++++...+.. .........+..+|+++++++.+..++....+++|++|.+..+.....
T Consensus 482 kmHDvvRe~al~ias~~~~~~e~~iv~~~~~-~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~ 560 (889)
T KOG4658|consen 482 KMHDVVREMALWIASDFGKQEENQIVSDGVG-LSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL 560 (889)
T ss_pred EeeHHHHHHHHHHhccccccccceEEECCcC-ccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhh
Confidence 999999999999999 66633332211 000001112578999999999999999888999999999954433467
Q ss_pred ccchhhhcCCCCceEEEcCCCc-CCCCCccccCCCCCcEEEcCCcccCC-cccccCCCCCcEEEccCCc-Ccccchhhhc
Q 004895 565 QISDHFFEGTEELKVLDFTGIR-FSPLPSSLGRLINLQTLCLDGWRLED-IAIVGQLKKLEILSLRGAE-IKQLPLQIGQ 641 (724)
Q Consensus 565 ~~~~~~~~~l~~L~~L~l~~~~-~~~lp~~i~~l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~-i~~lp~~i~~ 641 (724)
.++..+|..++.|+||||++|. +.++|.+|++|.|||||+|+++.++. |..+++|..|.+||+..+. +..+|..+..
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~ 640 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLE 640 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhh
Confidence 7888899999999999999764 56999999999999999999999998 8899999999999999984 4455666667
Q ss_pred CCCCCeEccCCCC-CCcccChHHhhCCCCCcEEEccCCCC----ccccc------------c-CCccchHHhhcCCCCCc
Q 004895 642 LTRLQLLDLSNCS-SLVVIAPNVISKLSRLEELYMGDSFS----QWDKV------------E-GGSNASLAELKGLSKLT 703 (724)
Q Consensus 642 l~~L~~L~l~~~~-~l~~~~~~~i~~l~~L~~L~l~~~~~----~~~~~------------~-~~~~~~l~~L~~L~~L~ 703 (724)
|++||+|.+.... ......-..+.+|.+|+.|....... ..... . ......+..+..+.+|+
T Consensus 641 L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~ 720 (889)
T KOG4658|consen 641 LQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLE 720 (889)
T ss_pred cccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCcc
Confidence 9999999997632 11111122234555555554433211 00000 0 01122344566778888
Q ss_pred EEEeeccccc
Q 004895 704 TLEIDVRDAE 713 (724)
Q Consensus 704 ~L~l~~n~~~ 713 (724)
.|.|..+...
T Consensus 721 ~L~i~~~~~~ 730 (889)
T KOG4658|consen 721 ELSILDCGIS 730 (889)
T ss_pred eEEEEcCCCc
Confidence 8888877764
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=7.9e-51 Score=489.53 Aligned_cols=503 Identities=21% Similarity=0.331 Sum_probs=358.0
Q ss_pred cccccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE---ecC---------
Q 004895 157 KDYNIFNSRKKIFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI---TKN--------- 222 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---s~~--------- 222 (724)
.+...++||+..++++..+|. .+++++|+|+||||+||||||+.+|+... .+|++.+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~--~~F~g~vfv~~~~v~~~~~~~~~~~~ 258 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLS--RQFQSSVFIDRAFISKSMEIYSSANP 258 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHh--hcCCeEEEeeccccccchhhcccccc
Confidence 345678999999999998875 56789999999999999999999999875 45888877642 111
Q ss_pred --CC-hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcE
Q 004895 223 --PD-AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCT 299 (724)
Q Consensus 223 --~~-~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ 299 (724)
++ ...+++.++..+........ .....+.+.+. ++|+||||||||+..+|+.+...... .++||+
T Consensus 259 ~~~~~~~~l~~~~l~~il~~~~~~~---~~~~~~~~~L~-~krvLLVLDdv~~~~~l~~L~~~~~~--------~~~Gsr 326 (1153)
T PLN03210 259 DDYNMKLHLQRAFLSEILDKKDIKI---YHLGAMEERLK-HRKVLIFIDDLDDQDVLDALAGQTQW--------FGSGSR 326 (1153)
T ss_pred cccchhHHHHHHHHHHHhCCCCccc---CCHHHHHHHHh-CCeEEEEEeCCCCHHHHHHHHhhCcc--------CCCCcE
Confidence 01 12344444444322211110 01234555565 68999999999999889888655444 578999
Q ss_pred EEEEecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCC-CCCCchhHHHHHHHHhCCchhHHHHHHHHhcCCCHH
Q 004895 300 IILTSRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGEST-KASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPA 378 (724)
Q Consensus 300 ilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~ 378 (724)
||||||+..++.. .+....|+++.+++++||+||+++||... +++++.+++++|+++|+|+|||++++|+.|++++..
T Consensus 327 IIiTTrd~~vl~~-~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~ 405 (1153)
T PLN03210 327 IIVITKDKHFLRA-HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKE 405 (1153)
T ss_pred EEEEeCcHHHHHh-cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHH
Confidence 9999999998633 45567999999999999999999998544 334578899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCccccccCCCcccchhhHhhhhhcHH-HHHHHHHhhccCCCCCcccHHHHHHHHhhccccccccccccc
Q 004895 379 IWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDD-EAKSLFLLCGLHREGRPIHVHYLLRYVMGLRYDKGLGLFRNV 457 (724)
Q Consensus 379 ~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cf~~~s~fp~~~~i~~~~Li~~W~~~~~~~~~g~i~~~ 457 (724)
+|+.+++++... .+..+..+|++||+.|++ ..|.||+++|.|+.+..++ .+..|+ +.+...
T Consensus 406 ~W~~~l~~L~~~-------~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l------~~~~~~-- 467 (1153)
T PLN03210 406 DWMDMLPRLRNG-------LDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLL------ANSDLD-- 467 (1153)
T ss_pred HHHHHHHHHHhC-------ccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHH------HhcCCC--
Confidence 999999998653 234689999999999986 5999999999999875443 356677 443321
Q ss_pred ccHHHHHHHHHHHHHHHHhhcccccCCCCCcchhhHHHHHHHHHHhhhcce------eeccCcchhhhhHhh-hhccCce
Q 004895 458 YTLEAARNRVDALIDNLKASCLLLDGDAEDEAKLHDVIHVVAASIAEEKLM------FSIPNVVDFEREMEE-TIQKGPI 530 (724)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~mHdlv~d~a~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~ 530 (724)
....++.|+++||++.. ...+.|||++|++|+.+++++.. +.... .++...+.. .....++
T Consensus 468 ---------~~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~-~di~~vl~~~~g~~~v~ 535 (1153)
T PLN03210 468 ---------VNIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDA-KDICDVLEDNTGTKKVL 535 (1153)
T ss_pred ---------chhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCH-HHHHHHHHhCcccceee
Confidence 11237778889999754 35699999999999999987630 11110 011001111 0134556
Q ss_pred EEeccCCCcccCCC----cccCCCccEEEEecc-----------------------------cccccccchhhhcCCCCc
Q 004895 531 AISLPYRDIQELPE----RLECPQLKLFLLFAK-----------------------------YDSTLQISDHFFEGTEEL 577 (724)
Q Consensus 531 ~l~l~~~~~~~~~~----~~~~~~Lr~L~l~~~-----------------------------~~~~~~~~~~~~~~l~~L 577 (724)
.+++..+.+.++.- ..++++|+.|.+..+ .+....+|..+ .+.+|
T Consensus 536 ~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f--~~~~L 613 (1153)
T PLN03210 536 GITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF--RPENL 613 (1153)
T ss_pred EEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC--CccCC
Confidence 66554444332211 124555555555311 11222333322 34678
Q ss_pred eEEEcCCCcCCCCCccccCCCCCcEEEcCCcc-cCCcccccCCCCCcEEEccCC-cCcccchhhhcCCCCCeEccCCCCC
Q 004895 578 KVLDFTGIRFSPLPSSLGRLINLQTLCLDGWR-LEDIAIVGQLKKLEILSLRGA-EIKQLPLQIGQLTRLQLLDLSNCSS 655 (724)
Q Consensus 578 ~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~-l~~~~~~~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~~~~~ 655 (724)
+.|+++++.+..+|..+..+.+|++|+|++|. +..++.++.+++|++|++++| .+..+|..+.++++|++|++++|+.
T Consensus 614 ~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~ 693 (1153)
T PLN03210 614 VKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCEN 693 (1153)
T ss_pred cEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCC
Confidence 88888888888888888888999999998875 566677888999999999988 6778899999999999999999888
Q ss_pred CcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccccc
Q 004895 656 LVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 656 l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~ 719 (724)
+..+|.. + ++++|+.|++++|..... +.. ...+|+.|+++.|.+..+|..+
T Consensus 694 L~~Lp~~-i-~l~sL~~L~Lsgc~~L~~---------~p~--~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 694 LEILPTG-I-NLKSLYRLNLSGCSRLKS---------FPD--ISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred cCccCCc-C-CCCCCCEEeCCCCCCccc---------ccc--ccCCcCeeecCCCccccccccc
Confidence 8888764 2 788999999888742111 111 1357788888888887777654
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.7e-43 Score=366.11 Aligned_cols=276 Identities=34% Similarity=0.571 Sum_probs=222.3
Q ss_pred hHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC-
Q 004895 165 RKKIFQDVIEALKD--DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD- 241 (724)
Q Consensus 165 R~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~- 241 (724)
|+.++++|.+.|.+ ++.++|+|+||||+||||||+.++++...+.+|+.++|+++++..+..+++..|+++++....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~ 80 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSS 80 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-ST
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccc
Confidence 78999999999986 789999999999999999999999997788899999999999999999999999999988743
Q ss_pred --CCchhHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccchhhhhcCCCce
Q 004895 242 --SNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCIDMNSQKM 319 (724)
Q Consensus 242 --~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~ 319 (724)
...........+.+.+. ++++||||||||+...|+.+...++. ...+++||||||+..++.........
T Consensus 81 ~~~~~~~~~~~~~l~~~L~-~~~~LlVlDdv~~~~~~~~l~~~~~~--------~~~~~kilvTTR~~~v~~~~~~~~~~ 151 (287)
T PF00931_consen 81 ISDPKDIEELQDQLRELLK-DKRCLLVLDDVWDEEDLEELREPLPS--------FSSGSKILVTTRDRSVAGSLGGTDKV 151 (287)
T ss_dssp SSCCSSHHHHHHHHHHHHC-CTSEEEEEEEE-SHHHH-------HC--------HHSS-EEEEEESCGGGGTTHHSCEEE
T ss_pred cccccccccccccchhhhc-cccceeeeeeeccccccccccccccc--------cccccccccccccccccccccccccc
Confidence 22224556777887776 57999999999999999888777665 66799999999999886433333679
Q ss_pred EecCCCCHHHHHHHHHHHhCCCC--CCCCchhHHHHHHHHhCCchhHHHHHHHHhcCC-CHHHHHHHHHHHhcCcccccc
Q 004895 320 FWIDALSEEEALQLFEKIVGEST--KASDFRPLAEEIVGKCGGLPVALSTVANALKNK-SPAIWKDALNKLTSSNLREIH 396 (724)
Q Consensus 320 ~~l~~L~~~e~~~Lf~~~~~~~~--~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~-~~~~w~~~~~~l~~~~~~~~~ 396 (724)
+++++|+++|+++||.+.++... ..+.+++.+++|+++|+|+||||+++|++|+.+ +..+|+.+++++...... ..
T Consensus 152 ~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~-~~ 230 (287)
T PF00931_consen 152 IELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRE-SR 230 (287)
T ss_dssp EECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTC-SS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cc
Confidence 99999999999999999998543 445668899999999999999999999999644 788999999887765432 22
Q ss_pred CCCcccchhhHhhhhhcHHHHHHHHHhhccCCCCCcccHHHHHHHHhhcccccccccccc
Q 004895 397 GMDADVYSPIKLSYDFLDDEAKSLFLLCGLHREGRPIHVHYLLRYVMGLRYDKGLGLFRN 456 (724)
Q Consensus 397 ~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~~~~~~~~~g~i~~ 456 (724)
+....+..++..||+.||+++|+||+|||+||+++.|+++.|+++|+ ++|+|..
T Consensus 231 ~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~------~e~~i~~ 284 (287)
T PF00931_consen 231 DYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWV------AEGFISS 284 (287)
T ss_dssp GSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHT------T-HHTC-
T ss_pred cccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHH------HCCCCcc
Confidence 24678999999999999999999999999999999999999999999 9999864
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=1.9e-17 Score=145.80 Aligned_cols=166 Identities=23% Similarity=0.326 Sum_probs=133.9
Q ss_pred ccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC-cccccC
Q 004895 540 QELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED-IAIVGQ 618 (724)
Q Consensus 540 ~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-~~~~~~ 618 (724)
.+++....+++...|.+ +.+....+|+. +..+.+|.+|++.+|+++++|.+|+.++.|+.|+++.|.+.. |..|+.
T Consensus 24 ~~~~gLf~~s~ITrLtL--SHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTL--SHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhc--ccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 34455555666666666 34444555554 567889999999999999999999999999999999999877 789999
Q ss_pred CCCCcEEEccCCcCc--ccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhh
Q 004895 619 LKKLEILSLRGAEIK--QLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAEL 696 (724)
Q Consensus 619 l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L 696 (724)
++-|+.||+.+|.++ .+|..+..++.|+.|+++. +.++-+|+. +++|++||.|.+..|... ....++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~d-vg~lt~lqil~lrdndll---------~lpkei 169 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPD-VGKLTNLQILSLRDNDLL---------SLPKEI 169 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChh-hhhhcceeEEeeccCchh---------hCcHHH
Confidence 999999999999877 7899999999999999998 567777776 799999999998876321 233567
Q ss_pred cCCCCCcEEEeeccccccccccc
Q 004895 697 KGLSKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 697 ~~L~~L~~L~l~~n~~~~lp~~~ 719 (724)
..|.+|+.|.|.+|+++.+|..+
T Consensus 170 g~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 170 GDLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHHhcccceeeecChhh
Confidence 77788999999999999988654
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.54 E-value=5.4e-13 Score=160.72 Aligned_cols=296 Identities=16% Similarity=0.230 Sum_probs=183.1
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~ 234 (724)
|.....++-|...++.+-+ ....+++.|+|++|.||||++.++.+. ++.++|+++... .+...+...++.
T Consensus 10 p~~~~~~~~R~rl~~~l~~---~~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~~ 80 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSG---ANNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLIA 80 (903)
T ss_pred CCCccccCcchHHHHHHhc---ccCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHHH
Confidence 3444566788866666543 246789999999999999999998853 225899999744 466667677777
Q ss_pred hhCCCCCCC-------------chhHHHHHHHHHHHhc-CCcEEEEEcccccccc--cc-ccccccCCCCcCCCCCCCCC
Q 004895 235 DLGMNFDSN-------------DLIYHRAKQLCQRLKK-EKRVLIILDNIWTKLE--LD-KIGIPYGDVDEKDKNDDPRR 297 (724)
Q Consensus 235 ~l~~~~~~~-------------~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~--~~-~l~~~~~~~~~~~~~~~~~~ 297 (724)
.++...... .........+...+.. +.+++|||||+...++ .. .+...+.. ...+
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~--------~~~~ 152 (903)
T PRK04841 81 ALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRH--------QPEN 152 (903)
T ss_pred HHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHh--------CCCC
Confidence 764211110 1112233444444443 6789999999965431 11 22111222 3456
Q ss_pred cEEEEEecccchhhh-h-cCCCceEecC----CCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHH
Q 004895 298 CTIILTSRSRDLLCI-D-MNSQKMFWID----ALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANA 371 (724)
Q Consensus 298 s~ilvTtR~~~v~~~-~-~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 371 (724)
.++|||||...-... . ........+. +|+.+|+.++|....+... -.+...+|.+.|+|+|+++..++..
T Consensus 153 ~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 153 LTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred eEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHH
Confidence 788899998532110 0 0112244555 9999999999988765432 1456789999999999999999887
Q ss_pred hcCCCHHHHHHHHHHHhcCccccccCCCcccchhhHh-hhhhcHHHHHHHHHhhccCCCCCcccHHHHHHHHhhcccccc
Q 004895 372 LKNKSPAIWKDALNKLTSSNLREIHGMDADVYSPIKL-SYDFLDDEAKSLFLLCGLHREGRPIHVHYLLRYVMGLRYDKG 450 (724)
Q Consensus 372 l~~~~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~-sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~~~~~~~~ 450 (724)
+...... .......+.. .....+...+.. .++.||++.+..+...|+++ .++.+.+ ..-. +
T Consensus 229 ~~~~~~~-~~~~~~~~~~-------~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~-~~l~------~ 290 (903)
T PRK04841 229 ARQNNSS-LHDSARRLAG-------INASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALI-VRVT------G 290 (903)
T ss_pred HhhCCCc-hhhhhHhhcC-------CCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHH-HHHc------C
Confidence 7543210 0011111100 011234554444 48999999999999999997 3564433 2211 1
Q ss_pred cccccccccHHHHHHHHHHHHHHHHhhccccc-C-CCCCcchhhHHHHHHHHHHh
Q 004895 451 LGLFRNVYTLEAARNRVDALIDNLKASCLLLD-G-DAEDEAKLHDVIHVVAASIA 503 (724)
Q Consensus 451 ~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~-~-~~~~~~~mHdlv~d~a~~~~ 503 (724)
.+++ .+.+++|.+.+++.. . +....|+.|++++++++...
T Consensus 291 ---------~~~~----~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ---------EENG----QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---------CCcH----HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 0112 356777888888653 2 23457899999999998775
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=5.2e-16 Score=161.86 Aligned_cols=151 Identities=22% Similarity=0.279 Sum_probs=127.4
Q ss_pred ccCceEEeccCCCcccCCC-cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEE
Q 004895 526 QKGPIAISLPYRDIQELPE-RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLC 604 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 604 (724)
..++.||++..|++..+.. ..++|.||++.+-.++.....+|++.| .+.-|.+||||+|++.+.|..+.+-+++-.|+
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLN 132 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLN 132 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEE
Confidence 5688999999999877754 348999999999666667778998866 58999999999999999999999999999999
Q ss_pred cCCcccCC-c-ccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 605 LDGWRLED-I-AIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 605 L~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
|++|.|.. | +-+-+|.-|-+||||+|++..+|+.+.+|..|++|.|++| .+...--..+..|++|++|.+++.
T Consensus 133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~vLhms~T 207 (1255)
T KOG0444|consen 133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLSVLHMSNT 207 (1255)
T ss_pred cccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhhhhhcccc
Confidence 99999988 4 3466899999999999999999999999999999999994 444433333456777788887764
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.46 E-value=2.6e-13 Score=164.54 Aligned_cols=150 Identities=25% Similarity=0.301 Sum_probs=87.6
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCC-CCCccccCCCCCcEEE
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFS-PLPSSLGRLINLQTLC 604 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~ 604 (724)
..++++|++++|++........+++|++|.+. .+......+..+.++++|++|++++|.+. .+|..++++.+|++|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls--~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS--NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECc--CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 34666666666665432222345666666662 22222222233566667777777766665 5566666677777777
Q ss_pred cCCcccCC--cccccCCCCCcEEEccCCcCc-ccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 605 LDGWRLED--IAIVGQLKKLEILSLRGAEIK-QLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 605 L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
|++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|. +....|..++++++|++|++++|
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n 270 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQN 270 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCC
Confidence 76666554 456666666666666666655 556666666666666666643 33233334666666666666654
No 8
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.41 E-value=1.3e-12 Score=158.27 Aligned_cols=179 Identities=22% Similarity=0.292 Sum_probs=128.9
Q ss_pred ccCceEEeccCCCcc-cCCCcc--cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCC-CCCccccCCCCCc
Q 004895 526 QKGPIAISLPYRDIQ-ELPERL--ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFS-PLPSSLGRLINLQ 601 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~-~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~ 601 (724)
...++.|.+++|.+. .+|... .+++|+.|++. ++.....+|. ..+++|++|++++|.+. .+|..++++.+|+
T Consensus 92 l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls-~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 167 (968)
T PLN00113 92 LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS-NNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLK 167 (968)
T ss_pred CCCCCEEECCCCccCCcCChHHhccCCCCCEEECc-CCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCC
Confidence 457777888777764 455432 67788888873 2222223332 34677888888888887 6788888889999
Q ss_pred EEEcCCcccCC--cccccCCCCCcEEEccCCcCc-ccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 602 TLCLDGWRLED--IAIVGQLKKLEILSLRGAEIK-QLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 602 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
+|+|++|.+.. |..++++++|++|++++|.+. .+|..++++++|++|++++|. +....|..++++++|++|++++|
T Consensus 168 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n 246 (968)
T PLN00113 168 VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIGGLTSLNHLDLVYN 246 (968)
T ss_pred EEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc-cCCcCChhHhcCCCCCEEECcCc
Confidence 99998888764 577888889999999888776 678888889999999988854 44334455888999999998876
Q ss_pred CCccccccCCccchHHhhcCCCCCcEEEeeccccc-cccc
Q 004895 679 FSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAE-MLRR 717 (724)
Q Consensus 679 ~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~-~lp~ 717 (724)
. +.+..+ ..+.++++|+.|+++.|.+. .+|.
T Consensus 247 ~-----l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p~ 278 (968)
T PLN00113 247 N-----LTGPIP---SSLGNLKNLQYLFLYQNKLSGPIPP 278 (968)
T ss_pred e-----eccccC---hhHhCCCCCCEEECcCCeeeccCch
Confidence 3 222223 34667788999999998874 3443
No 9
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.38 E-value=2.9e-11 Score=132.69 Aligned_cols=301 Identities=17% Similarity=0.209 Sum_probs=194.6
Q ss_pred cCCCcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHH
Q 004895 153 FGDMKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGE 231 (724)
Q Consensus 153 ~~~~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~ 231 (724)
..+|..+...+-|...++.+.. ..+.+++.|..|+|.|||||+.++...... =..+.|.++.+. .++..+...
T Consensus 12 ~~~P~~~~~~v~R~rL~~~L~~---~~~~RL~li~APAGfGKttl~aq~~~~~~~---~~~v~Wlslde~dndp~rF~~y 85 (894)
T COG2909 12 LVRPVRPDNYVVRPRLLDRLRR---ANDYRLILISAPAGFGKTTLLAQWRELAAD---GAAVAWLSLDESDNDPARFLSY 85 (894)
T ss_pred cCCCCCcccccccHHHHHHHhc---CCCceEEEEeCCCCCcHHHHHHHHHHhcCc---ccceeEeecCCccCCHHHHHHH
Confidence 3344445666778766655543 347899999999999999999999873332 245999999865 567888888
Q ss_pred HHHhhCCCCCCCc-------------hhHHHHHHHHHHHhc-CCcEEEEEcccccccc--c-cccccccCCCCcCCCCCC
Q 004895 232 LASDLGMNFDSND-------------LIYHRAKQLCQRLKK-EKRVLIILDNIWTKLE--L-DKIGIPYGDVDEKDKNDD 294 (724)
Q Consensus 232 i~~~l~~~~~~~~-------------~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~--~-~~l~~~~~~~~~~~~~~~ 294 (724)
++..++.-.+.-. ........+...+.. .++..+||||..-..+ . ..+...+.. .
T Consensus 86 Li~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~--------~ 157 (894)
T COG2909 86 LIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH--------A 157 (894)
T ss_pred HHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh--------C
Confidence 8888763322211 012233444444432 5689999999865532 1 122222223 5
Q ss_pred CCCcEEEEEecccchhhhh--cCCCceEecC----CCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 295 PRRCTIILTSRSRDLLCID--MNSQKMFWID----ALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 295 ~~~s~ilvTtR~~~v~~~~--~~~~~~~~l~----~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
..+-..|+|||+..-.... .-....+++. .|+.+|+.++|....+..-+ +...+.+.+..+|.+-|+..+
T Consensus 158 P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~ 233 (894)
T COG2909 158 PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLI 233 (894)
T ss_pred CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHH
Confidence 5688899999998632110 0111233333 58999999999987543222 345789999999999999999
Q ss_pred HHHhcCC-CHHHHHHHHHHHhcCccccccCCCcccch-hhHhhhhhcHHHHHHHHHhhccCCCCCcccHHHHHHHHhhcc
Q 004895 369 ANALKNK-SPAIWKDALNKLTSSNLREIHGMDADVYS-PIKLSYDFLDDEAKSLFLLCGLHREGRPIHVHYLLRYVMGLR 446 (724)
Q Consensus 369 ~~~l~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~~~~ 446 (724)
+=.+++. +.+.-...++- ...-+.. ...--++.||++++..+.-||+++. --+.|+..-.
T Consensus 234 aLa~~~~~~~~q~~~~LsG-----------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~----f~~eL~~~Lt--- 295 (894)
T COG2909 234 ALALRNNTSAEQSLRGLSG-----------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR----FNDELCNALT--- 295 (894)
T ss_pred HHHccCCCcHHHHhhhccc-----------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH----hhHHHHHHHh---
Confidence 9888833 33322221110 1111222 2345688999999999999999965 2344555443
Q ss_pred cccccccccccccHHHHHHHHHHHHHHHHhhccccc--CCCCCcchhhHHHHHHHHHHhhh
Q 004895 447 YDKGLGLFRNVYTLEAARNRVDALIDNLKASCLLLD--GDAEDEAKLHDVIHVVAASIAEE 505 (724)
Q Consensus 447 ~~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~--~~~~~~~~mHdlv~d~a~~~~~~ 505 (724)
+ ++....++++|.+++++.. ++....|+.|.++.||-+..-..
T Consensus 296 ---g-------------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 296 ---G-------------EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred ---c-------------CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 2 2233467888999998752 35677899999999999877654
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.37 E-value=1.6e-14 Score=127.46 Aligned_cols=147 Identities=23% Similarity=0.374 Sum_probs=80.6
Q ss_pred cCceEEeccCCCcccCCCcc-cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 527 KGPIAISLPYRDIQELPERL-ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
+.++++.++.|.+..+|..+ ++.+|+.|++ .++...++|.+ ++.++.|+.|+++.|++..+|..++.++-|..|+|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~--~nnqie~lp~~-issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNL--SNNQIEELPTS-ISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhc--ccchhhhcChh-hhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 44555555555555554332 5555565555 23334444433 45555666666666665556666666666666666
Q ss_pred CCcccCC---cccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 606 DGWRLED---IAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 606 ~~~~l~~---~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
++|.+.+ |..|..+..|+-|.++.|.++-+|+.+++|++|+.|.+.. +.+-.+|.+ ++.|+.|++|++.+|
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpke-ig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKE-IGDLTRLRELHIQGN 183 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHH-HHHHHHHHHHhcccc
Confidence 6665544 3445555555555566665555566666666666665555 334444443 556666666655554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.33 E-value=8.7e-14 Score=138.67 Aligned_cols=180 Identities=22% Similarity=0.320 Sum_probs=129.2
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcC
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLD 606 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 606 (724)
..+..++++.|++..+|+..+|+.|..|.+ +.+....+|....+++.+|.+||+..|++++.|+.++.+.+|.+|+++
T Consensus 206 ~~L~~LyL~~Nki~~lPef~gcs~L~Elh~--g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlS 283 (565)
T KOG0472|consen 206 ESLELLYLRRNKIRFLPEFPGCSLLKELHV--GENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLS 283 (565)
T ss_pred hhhHHHHhhhcccccCCCCCccHHHHHHHh--cccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhccc
Confidence 456667788888888888778888888877 556667777777788888888888888888888888888888888888
Q ss_pred CcccCC-cccccCCCCCcEEEccCCcCcccchhh------------------------------------------hcCC
Q 004895 607 GWRLED-IAIVGQLKKLEILSLRGAEIKQLPLQI------------------------------------------GQLT 643 (724)
Q Consensus 607 ~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i------------------------------------------~~l~ 643 (724)
+|.++. |.++++| +|+.|-+-||.+.++-.+| ..+.
T Consensus 284 NN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i 362 (565)
T KOG0472|consen 284 NNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAII 362 (565)
T ss_pred CCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhh
Confidence 888888 6788888 8888877666543321111 1122
Q ss_pred CCCeEccC-------------------------------------------------CCCCCcccChHHhhCCCCCcEEE
Q 004895 644 RLQLLDLS-------------------------------------------------NCSSLVVIAPNVISKLSRLEELY 674 (724)
Q Consensus 644 ~L~~L~l~-------------------------------------------------~~~~l~~~~~~~i~~l~~L~~L~ 674 (724)
+.+.|+++ . ++..+.+|..++.+++|..|+
T Consensus 363 ~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls-nn~isfv~~~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 363 TTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS-NNKISFVPLELSQLQKLTFLD 441 (565)
T ss_pred hhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh-cCccccchHHHHhhhcceeee
Confidence 23333222 2 122334466688999999999
Q ss_pred ccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccccc
Q 004895 675 MGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 675 l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~ 719 (724)
+++|+.. ..| .++..+..|+.|+|+.|+|..+|+..
T Consensus 442 L~NN~Ln------~LP---~e~~~lv~Lq~LnlS~NrFr~lP~~~ 477 (565)
T KOG0472|consen 442 LSNNLLN------DLP---EEMGSLVRLQTLNLSFNRFRMLPECL 477 (565)
T ss_pred cccchhh------hcc---hhhhhhhhhheecccccccccchHHH
Confidence 9987532 223 45556677999999999999999754
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.32 E-value=1.5e-13 Score=143.75 Aligned_cols=150 Identities=24% Similarity=0.406 Sum_probs=127.2
Q ss_pred ccCceEEeccCCCcccCCCcc-cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEE
Q 004895 526 QKGPIAISLPYRDIQELPERL-ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLC 604 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 604 (724)
...+..|+++.|.+.+.|..+ ..+++-.|++ +++.+..+|...|-++.-|-.||||+|++..+|+.+..|.+|++|.
T Consensus 102 l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL--S~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~ 179 (1255)
T KOG0444|consen 102 LKDLTILDLSHNQLREVPTNLEYAKNSIVLNL--SYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLK 179 (1255)
T ss_pred cccceeeecchhhhhhcchhhhhhcCcEEEEc--ccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhh
Confidence 567888999999999998765 4677888888 6777889999999999999999999999999999999999999999
Q ss_pred cCCcccCC--cccccCCCCCcEEEccCCc--CcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 605 LDGWRLED--IAIVGQLKKLEILSLRGAE--IKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 605 L~~~~l~~--~~~~~~l~~L~~L~l~~~~--i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
|++|.+.. +..+..+++|++|.++++. +..+|.++..|.+|+.++++. +++..+| ..+-++++|+.|++++|.
T Consensus 180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vP-ecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVP-ECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred cCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcch-HHHhhhhhhheeccCcCc
Confidence 99998765 4667778888899998884 447888899999999999987 5676665 457888999999988864
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.31 E-value=2.5e-13 Score=141.39 Aligned_cols=150 Identities=23% Similarity=0.290 Sum_probs=107.3
Q ss_pred ccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCcccchh-hh
Q 004895 565 QISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQLPLQ-IG 640 (724)
Q Consensus 565 ~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~ 640 (724)
.+-+..|-++..+..|+|+.|++..+- .++..|..|+.|+|++|.|.. +.++...++|+.|+|++|.|+++|++ +.
T Consensus 259 kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 259 KLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 344555666677777777777776553 356777788888888887776 46777778888888888888887554 77
Q ss_pred cCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccccccccc
Q 004895 641 QLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIWS 720 (724)
Q Consensus 641 ~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~~ 720 (724)
.|..|+.|+|++ +.+..+..+.+..+++|++|++..|...|. ++ ..-.....|+.|++|.+.+|.++.+|+.-|
T Consensus 339 ~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~ls~~-IE----Daa~~f~gl~~LrkL~l~gNqlk~I~krAf 412 (873)
T KOG4194|consen 339 VLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNELSWC-IE----DAAVAFNGLPSLRKLRLTGNQLKSIPKRAF 412 (873)
T ss_pred HHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeEEEE-Ee----cchhhhccchhhhheeecCceeeecchhhh
Confidence 778888888888 567777777778888888888888765554 22 233345567888888888888877776543
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.29 E-value=1e-12 Score=136.96 Aligned_cols=180 Identities=21% Similarity=0.251 Sum_probs=101.3
Q ss_pred CceEEeccCCCcccCCCc--ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcEEE
Q 004895 528 GPIAISLPYRDIQELPER--LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQTLC 604 (724)
Q Consensus 528 ~~~~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 604 (724)
-+|.++++.|.+.+++.. ..-.+++.|++ ..+.+..+..+.|.++.+|-+|.|+.|+++.+|. .|.+|++|+.|+
T Consensus 150 alrslDLSrN~is~i~~~sfp~~~ni~~L~L--a~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~Ld 227 (873)
T KOG4194|consen 150 ALRSLDLSRNLISEIPKPSFPAKVNIKKLNL--ASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLD 227 (873)
T ss_pred hhhhhhhhhchhhcccCCCCCCCCCceEEee--ccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhh
Confidence 345555666666555432 23345666666 4444555555556666666666666666666654 344466666666
Q ss_pred cCCcccCCc--ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCc
Q 004895 605 LDGWRLEDI--AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQ 681 (724)
Q Consensus 605 L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 681 (724)
|..|.|... -.|..|.+|+.|.+..|.|..+-.+ +..|.++++|+|.. +.+..+-.+.+..|++|+.|+++.|.+.
T Consensus 228 LnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 228 LNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred ccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-chhhhhhcccccccchhhhhccchhhhh
Confidence 666665542 4556666666666666666666444 45566666666666 4455555555566666666666665321
Q ss_pred cccccCCccchHHhhcCCCCCcEEEeecccccccccc
Q 004895 682 WDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRI 718 (724)
Q Consensus 682 ~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~ 718 (724)
.. . +......++|+.|+++.|.++.+++.
T Consensus 307 ri-----h---~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 307 RI-----H---IDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred ee-----e---cchhhhcccceeEeccccccccCChh
Confidence 11 1 11222334555666666655555544
No 15
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.29 E-value=6e-10 Score=114.04 Aligned_cols=186 Identities=17% Similarity=0.241 Sum_probs=117.1
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHH---
Q 004895 178 DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLC--- 254 (724)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~--- 254 (724)
....+++.|+|++|+||||+++.+++..... .+ .+.|+ +....+..+++..|+..++.+..... .......+.
T Consensus 40 ~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~~~~-~~~~~~~l~~~l 115 (269)
T TIGR03015 40 SQREGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETEGRD-KAALLRELEDFL 115 (269)
T ss_pred hcCCCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCCCCC-HHHHHHHHHHHH
Confidence 3445689999999999999999999887532 11 12233 23345777899999999887654332 222223333
Q ss_pred -HHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccchh--------hhhcCCCceEecC
Q 004895 255 -QRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL--------CIDMNSQKMFWID 323 (724)
Q Consensus 255 -~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~ 323 (724)
.....+++.++|+||++... .++.+...... .........|++|....... .........+.++
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~-----~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNF-----QTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCc-----ccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 33335788999999998753 33333211110 00022233456665433110 1111224468899
Q ss_pred CCCHHHHHHHHHHHhCCCC---CCCCchhHHHHHHHHhCCchhHHHHHHHHh
Q 004895 324 ALSEEEALQLFEKIVGEST---KASDFRPLAEEIVGKCGGLPVALSTVANAL 372 (724)
Q Consensus 324 ~L~~~e~~~Lf~~~~~~~~---~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 372 (724)
+++.+|..+++...+.... ...-.++..+.|++.|+|.|..|+.++..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999999999998774221 122235789999999999999999988877
No 16
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.28 E-value=8.5e-10 Score=119.54 Aligned_cols=296 Identities=16% Similarity=0.110 Sum_probs=172.2
Q ss_pred ccccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHH
Q 004895 158 DYNIFNSRKKIFQDVIEALK----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELA 233 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 233 (724)
.+..++||++++++|...+. ......+.|+|++|+|||++++.++++.......-.++++++....+...++..|+
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~ 107 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIA 107 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHH
Confidence 34568899999999988874 33456788999999999999999999886543223466777777778888999999
Q ss_pred HhhCC-CCCCC-chhHHHHHHHHHHHhc-CCcEEEEEccccccc---cccccccccCCCCcCCCCCCCC--CcEEEEEec
Q 004895 234 SDLGM-NFDSN-DLIYHRAKQLCQRLKK-EKRVLIILDNIWTKL---ELDKIGIPYGDVDEKDKNDDPR--RCTIILTSR 305 (724)
Q Consensus 234 ~~l~~-~~~~~-~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~~~~~~--~s~ilvTtR 305 (724)
+++.. ..+.. ....+....+.+.+.. +++.+||||+++... ..+.+...+.... ... ...+|.++.
T Consensus 108 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~------~~~~~~v~vI~i~~ 181 (394)
T PRK00411 108 RQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE------EYPGARIGVIGISS 181 (394)
T ss_pred HHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh------ccCCCeEEEEEEEC
Confidence 99865 22211 1133445556666643 456899999998753 1111111110000 112 233566665
Q ss_pred ccchhhh------hcCCCceEecCCCCHHHHHHHHHHHhCCCC-CCCCchhHHHHHHHHh----CCchhHHHHHHHHhc-
Q 004895 306 SRDLLCI------DMNSQKMFWIDALSEEEALQLFEKIVGEST-KASDFRPLAEEIVGKC----GGLPVALSTVANALK- 373 (724)
Q Consensus 306 ~~~v~~~------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c----~GlPLai~~~~~~l~- 373 (724)
...+... ..-....+.+++++.++..+++..++.... ...--++..+.|++.+ |..+.|+.++-....
T Consensus 182 ~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~ 261 (394)
T PRK00411 182 DLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLI 261 (394)
T ss_pred CcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 5433210 011235789999999999999998874211 1111133445555555 557777776644321
Q ss_pred ----CC---CHHHHHHHHHHHhcCccccccCCCcccchhhHhhhhhcHHHHHHHHHhhccCCC--CCcccHHHHHHHHhh
Q 004895 374 ----NK---SPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDDEAKSLFLLCGLHRE--GRPIHVHYLLRYVMG 444 (724)
Q Consensus 374 ----~~---~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~--~~~i~~~~Li~~W~~ 444 (724)
+. +.+.+..+.+... .......+..||.+.|..+..++-.-+ ...+....+.....
T Consensus 262 a~~~~~~~I~~~~v~~a~~~~~--------------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~- 326 (394)
T PRK00411 262 AEREGSRKVTEEDVRKAYEKSE--------------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYK- 326 (394)
T ss_pred HHHcCCCCcCHHHHHHHHHHHH--------------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH-
Confidence 11 5556665555431 123455788999988887776553321 12455555543211
Q ss_pred cccccccccccccccHHHHHHHHHHHHHHHHhhcccc
Q 004895 445 LRYDKGLGLFRNVYTLEAARNRVDALIDNLKASCLLL 481 (724)
Q Consensus 445 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~ 481 (724)
...+..|.. + -....+.++++.|...+++.
T Consensus 327 -~l~~~~~~~----~--~~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 327 -ELCEELGYE----P--RTHTRFYEYINKLDMLGIIN 356 (394)
T ss_pred -HHHHHcCCC----c--CcHHHHHHHHHHHHhcCCeE
Confidence 000011110 0 02344566778888888875
No 17
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.22 E-value=5.8e-09 Score=111.80 Aligned_cols=299 Identities=15% Similarity=0.154 Sum_probs=169.6
Q ss_pred ccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhcc-CC---CeEEEEEEecCCChHHHHHH
Q 004895 160 NIFNSRKKIFQDVIEALK----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDN-VF---DKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~F---~~~~wv~vs~~~~~~~l~~~ 231 (724)
..++||++++++|...+. ....+.+.|+|++|+|||++++.+++...... .. -.++|+++....+...++..
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~ 94 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVLVE 94 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHHHH
Confidence 468899999999999886 24456889999999999999999999865321 11 13677888777778889999
Q ss_pred HHHhh---CCCCCCCc-hhHHHHHHHHHHHh-cCCcEEEEEccccccc-cccccccccCCCCcCCCCCCCCCcEEEEEec
Q 004895 232 LASDL---GMNFDSND-LIYHRAKQLCQRLK-KEKRVLIILDNIWTKL-ELDKIGIPYGDVDEKDKNDDPRRCTIILTSR 305 (724)
Q Consensus 232 i~~~l---~~~~~~~~-~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~-~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 305 (724)
|++++ +...+... ...+....+.+.+. .+++++||||+++... ..+.+...+........ .......+|.++.
T Consensus 95 i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~-~~~~~v~lI~i~n 173 (365)
T TIGR02928 95 LANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD-LDNAKVGVIGISN 173 (365)
T ss_pred HHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-CCCCeEEEEEEEC
Confidence 99988 43322211 12334455555554 3567899999998762 11111111100000000 0112334555554
Q ss_pred ccchh----hhh--cCCCceEecCCCCHHHHHHHHHHHhCCC----CCCCCchhHHHHHHHHhCCchhHH-HHHHHHhc-
Q 004895 306 SRDLL----CID--MNSQKMFWIDALSEEEALQLFEKIVGES----TKASDFRPLAEEIVGKCGGLPVAL-STVANALK- 373 (724)
Q Consensus 306 ~~~v~----~~~--~~~~~~~~l~~L~~~e~~~Lf~~~~~~~----~~~~~l~~~~~~I~~~c~GlPLai-~~~~~~l~- 373 (724)
..... ... .-....+.+++++.+|..+++..++... .-.++..+.+.+++..+.|.|..+ .++-....
T Consensus 174 ~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~ 253 (365)
T TIGR02928 174 DLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEI 253 (365)
T ss_pred CcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 43321 000 1112468899999999999999887411 111222234455666777888544 33222111
Q ss_pred ----CC---CHHHHHHHHHHHhcCccccccCCCcccchhhHhhhhhcHHHHHHHHHhhccC--CCCCcccHHHHHHHHhh
Q 004895 374 ----NK---SPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDDEAKSLFLLCGLH--REGRPIHVHYLLRYVMG 444 (724)
Q Consensus 374 ----~~---~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~f--p~~~~i~~~~Li~~W~~ 444 (724)
+. +.+..+.+.+.+. .....-++..||.+.+..+..++.. ..+..+....+...+-
T Consensus 254 a~~~~~~~it~~~v~~a~~~~~--------------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~- 318 (365)
T TIGR02928 254 AEREGAERVTEDHVEKAQEKIE--------------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYK- 318 (365)
T ss_pred HHHcCCCCCCHHHHHHHHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHH-
Confidence 11 4455555544431 1234557788998888776665421 1333566666665332
Q ss_pred cccccccccccccccHHHHHHHHHHHHHHHHhhcccc
Q 004895 445 LRYDKGLGLFRNVYTLEAARNRVDALIDNLKASCLLL 481 (724)
Q Consensus 445 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~ 481 (724)
...+..|. .+ -....+.++++.|...|++.
T Consensus 319 -~~~~~~~~-~~-----~~~~~~~~~l~~l~~~gli~ 348 (365)
T TIGR02928 319 -EVCEDIGV-DP-----LTQRRISDLLNELDMLGLVE 348 (365)
T ss_pred -HHHHhcCC-CC-----CcHHHHHHHHHHHHhcCCeE
Confidence 00001121 11 13355667888888899886
No 18
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.20 E-value=8.6e-11 Score=117.50 Aligned_cols=197 Identities=23% Similarity=0.288 Sum_probs=104.6
Q ss_pred ccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHH---------
Q 004895 162 FNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGEL--------- 232 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i--------- 232 (724)
|+||++++++|.+++..+..+.+.|+|+.|+|||+|++.+.+..... .+ .++|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESNESS-LRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSHHHH-HHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchhhhH-HHHHHHHHHHHHH
Confidence 78999999999998887777899999999999999999999987432 11 344444433332221 1222
Q ss_pred -HHhh----CCC-C-----CCCchhHHHHHHHHHHHhc-CCcEEEEEccccccc-ccc---c----cccccCCCCcCCCC
Q 004895 233 -ASDL----GMN-F-----DSNDLIYHRAKQLCQRLKK-EKRVLIILDNIWTKL-ELD---K----IGIPYGDVDEKDKN 292 (724)
Q Consensus 233 -~~~l----~~~-~-----~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~-~~~---~----l~~~~~~~~~~~~~ 292 (724)
.+.+ ... . ............+.+.+.+ +++++||+||+.... ... . +...+.. .
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~------~ 151 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDS------L 151 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-------
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhh------c
Confidence 1112 110 0 0111123344555555543 345999999997665 111 1 1111100 0
Q ss_pred CCCCCcEEEEEecccchhhh-------hcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 293 DDPRRCTIILTSRSRDLLCI-------DMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 293 ~~~~~s~ilvTtR~~~v~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
.......++++..+...... ..+....+.+++|+.+++++++...+.....-+.-++..++|+..+||+|..|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHH
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHH
Confidence 02233344455444332211 12334469999999999999999976433111122566799999999999987
Q ss_pred HH
Q 004895 366 ST 367 (724)
Q Consensus 366 ~~ 367 (724)
..
T Consensus 232 ~~ 233 (234)
T PF01637_consen 232 QE 233 (234)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 19
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.19 E-value=1.4e-09 Score=113.40 Aligned_cols=274 Identities=15% Similarity=0.127 Sum_probs=148.7
Q ss_pred cccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHH
Q 004895 159 YNIFNSRKKIFQDVIEALK-----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELA 233 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 233 (724)
...|+|+++.++.|..++. ......+.++|++|+|||+||+.+++..... + ..+..+......++ ...+
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~--~---~~~~~~~~~~~~~l-~~~l 76 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN--L---KITSGPALEKPGDL-AAIL 76 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC--E---EEeccchhcCchhH-HHHH
Confidence 4578999999999988875 2345678899999999999999999877532 1 22222211122222 2222
Q ss_pred HhhCCCC----CC-CchhHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccc
Q 004895 234 SDLGMNF----DS-NDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD 308 (724)
Q Consensus 234 ~~l~~~~----~~-~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 308 (724)
..++... ++ ..........+...+. +.+..+|+|+..+...+... ..+.+-|..||+...
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~-~~~~~~v~~~~~~~~~~~~~--------------~~~~~li~~t~~~~~ 141 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAME-DFRLDIVIGKGPSARSVRLD--------------LPPFTLVGATTRAGM 141 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHh-hhheeeeeccCccccceeec--------------CCCeEEEEecCCccc
Confidence 3332110 00 0000111222333332 34455566655444333211 123455667777654
Q ss_pred hhhhh-cCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHhcCCCHHHHHHHHHHH
Q 004895 309 LLCID-MNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIWKDALNKL 387 (724)
Q Consensus 309 v~~~~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l 387 (724)
+.... ......+.+++++.++..+++.+.+..... .--++....|++.|+|.|-.+..++..+ |..... .
T Consensus 142 l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~-~ 212 (305)
T TIGR00635 142 LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQV-R 212 (305)
T ss_pred cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHH-c
Confidence 43211 112346899999999999999998863222 1225678899999999997765554432 111000 0
Q ss_pred hcCccccccCCCcccchhhHhhhhhcHHHHHHHHH-hhccCCCCCcccHHHHHHHHhhcccccccccccccccHHHHHHH
Q 004895 388 TSSNLREIHGMDADVYSPIKLSYDFLDDEAKSLFL-LCGLHREGRPIHVHYLLRYVMGLRYDKGLGLFRNVYTLEAARNR 466 (724)
Q Consensus 388 ~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~Li~~W~~~~~~~~~g~i~~~~~~~~~~~~ 466 (724)
....... ..-......+...|..|+++.+..+. .++.++.+ ++..+.+.... | .+...+
T Consensus 213 ~~~~it~--~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---------g-----~~~~~~--- 272 (305)
T TIGR00635 213 GQKIINR--DIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---------G-----EDADTI--- 272 (305)
T ss_pred CCCCcCH--HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---------C-----CCcchH---
Confidence 0000000 00011222255667888888887776 55777654 66666664433 1 111222
Q ss_pred HHHHHH-HHHhhcccccC
Q 004895 467 VDALID-NLKASCLLLDG 483 (724)
Q Consensus 467 ~~~~~~-~L~~~~ll~~~ 483 (724)
...++ .|++.+|+...
T Consensus 273 -~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 273 -EDVYEPYLLQIGFLQRT 289 (305)
T ss_pred -HHhhhHHHHHcCCcccC
Confidence 23455 47788998643
No 20
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.17 E-value=7.9e-10 Score=116.00 Aligned_cols=277 Identities=14% Similarity=0.108 Sum_probs=149.3
Q ss_pred CcccccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALK-----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQG 230 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 230 (724)
|.....|+|+++.++.+...+. ......+.|+|++|+||||||+.+++..... ..++..+.. .....+.
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~-----~~~~~~~~~-~~~~~l~ 94 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN-----IRITSGPAL-EKPGDLA 94 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC-----eEEEecccc-cChHHHH
Confidence 4456789999999998877664 2345678899999999999999999987532 122222211 1111222
Q ss_pred HHHHhhCCCC----CC-CchhHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEec
Q 004895 231 ELASDLGMNF----DS-NDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSR 305 (724)
Q Consensus 231 ~i~~~l~~~~----~~-~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 305 (724)
.++..++... ++ ........+.+...+. +.+..+++|+..+...+.. . -.+.+-|..|++
T Consensus 95 ~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e-~~~~~~~l~~~~~~~~~~~---~-----------l~~~~li~at~~ 159 (328)
T PRK00080 95 AILTNLEEGDVLFIDEIHRLSPVVEEILYPAME-DFRLDIMIGKGPAARSIRL---D-----------LPPFTLIGATTR 159 (328)
T ss_pred HHHHhcccCCEEEEecHhhcchHHHHHHHHHHH-hcceeeeeccCccccceee---c-----------CCCceEEeecCC
Confidence 3333332110 00 0000011111222222 2334445554333221110 0 122455667777
Q ss_pred ccchhhh-hcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHhcCCCHHHHHHHH
Q 004895 306 SRDLLCI-DMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIWKDAL 384 (724)
Q Consensus 306 ~~~v~~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~ 384 (724)
...+... .......++++++++++..+++.+.+...... --++.+..|++.|+|.|-.+..+...+. .|....
T Consensus 160 ~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~ 233 (328)
T PRK00080 160 AGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVE-IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVK 233 (328)
T ss_pred cccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCC-cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHc
Confidence 5544311 11123578999999999999999988643221 2256789999999999975555544321 111110
Q ss_pred HHHhcCccccccCCCcccchhhHhhhhhcHHHHHHHHH-hhccCCCCCcccHHHHHHHHhhcccccccccccccccHHHH
Q 004895 385 NKLTSSNLREIHGMDADVYSPIKLSYDFLDDEAKSLFL-LCGLHREGRPIHVHYLLRYVMGLRYDKGLGLFRNVYTLEAA 463 (724)
Q Consensus 385 ~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-~~s~fp~~~~i~~~~Li~~W~~~~~~~~~g~i~~~~~~~~~ 463 (724)
....... ..-......+...+..|++..+..+. ....|+.+ ++..+.+.... +. +.+.+
T Consensus 234 ---~~~~I~~--~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l-------g~-------~~~~~ 293 (328)
T PRK00080 234 ---GDGVITK--EIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL-------GE-------ERDTI 293 (328)
T ss_pred ---CCCCCCH--HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH-------CC-------CcchH
Confidence 0000000 00112234455667788888888876 77778766 67777775543 11 12223
Q ss_pred HHHHHHHHH-HHHhhcccccC
Q 004895 464 RNRVDALID-NLKASCLLLDG 483 (724)
Q Consensus 464 ~~~~~~~~~-~L~~~~ll~~~ 483 (724)
+ +.++ .|++.+|++..
T Consensus 294 ~----~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 294 E----DVYEPYLIQQGFIQRT 310 (328)
T ss_pred H----HHhhHHHHHcCCcccC
Confidence 3 2344 57778998644
No 21
>PF05729 NACHT: NACHT domain
Probab=99.13 E-value=5.3e-10 Score=105.23 Aligned_cols=145 Identities=24% Similarity=0.323 Sum_probs=92.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccC----CCeEEEEEEecCCChH---HHHHHHHHhhCCCCCCCchhHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNV----FDKVVMAEITKNPDAQ---KIQGELASDLGMNFDSNDLIYHRAKQLC 254 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~l~~~i~~~l~~~~~~~~~~~~~~~~l~ 254 (724)
+++.|+|.+|+||||+++.++.+...... +..++|++.+...... .+...|..+........ ...+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~------~~~~~ 74 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPI------EELLQ 74 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhh------HHHHH
Confidence 58899999999999999999999876543 3456777776544332 33333433333221111 11233
Q ss_pred HHHhcCCcEEEEEccccccccc---------cccccccCCCCcCCCCCCCCCcEEEEEecccchh--hhhcCCCceEecC
Q 004895 255 QRLKKEKRVLIILDNIWTKLEL---------DKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL--CIDMNSQKMFWID 323 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~~~~~~---------~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--~~~~~~~~~~~l~ 323 (724)
..+...++++||+|++++...- ..+...+-. ....++++++||+|..... .........+.+.
T Consensus 75 ~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~------~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~ 148 (166)
T PF05729_consen 75 ELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLP------QALPPGVKLIITSRPRAFPDLRRRLKQAQILELE 148 (166)
T ss_pred HHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhh------hccCCCCeEEEEEcCChHHHHHHhcCCCcEEEEC
Confidence 3344578999999999776331 111111111 0135689999999998762 2223444689999
Q ss_pred CCCHHHHHHHHHHHh
Q 004895 324 ALSEEEALQLFEKIV 338 (724)
Q Consensus 324 ~L~~~e~~~Lf~~~~ 338 (724)
+|++++..+++.+..
T Consensus 149 ~~~~~~~~~~~~~~f 163 (166)
T PF05729_consen 149 PFSEEDIKQYLRKYF 163 (166)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998875
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.09 E-value=6.6e-10 Score=135.42 Aligned_cols=43 Identities=33% Similarity=0.592 Sum_probs=23.5
Q ss_pred ccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 634 QLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 634 ~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
.+|..++++++|++|++++|+.+..+|.. + .+++|+.|++++|
T Consensus 793 ~lP~si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 793 ELPSSIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGC 835 (1153)
T ss_pred ccChhhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCC
Confidence 44555555555666666555555555443 1 4555555555554
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.05 E-value=4.7e-10 Score=127.94 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=85.8
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcC
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLD 606 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 606 (724)
..++.|.+++|.+..+|... .++|++|.+. .+....+|..+. .+|+.|++++|.+..+|..+. .+|++|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls--~N~LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL-QGNIKTLYAN--SNQLTSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhh-ccCCCEEECC--CCccccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence 45556666666665555432 2456666552 222333443221 245555555555555554443 245555555
Q ss_pred CcccCC-cccccCCCCCcEEEccCCcCcccchhhh-------------------cCCCCCeEccCCCCCCcccChHHhhC
Q 004895 607 GWRLED-IAIVGQLKKLEILSLRGAEIKQLPLQIG-------------------QLTRLQLLDLSNCSSLVVIAPNVISK 666 (724)
Q Consensus 607 ~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~-------------------~l~~L~~L~l~~~~~l~~~~~~~i~~ 666 (724)
+|.++. |..+. .+|++|++++|.++.+|..+. -.++|+.|++++| .+..+|.. +
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N-~Lt~LP~~-l-- 344 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN-ALTSLPAS-L-- 344 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCC-ccccCChh-h--
Confidence 555544 22221 245555555555544443221 1245666666663 45555432 2
Q ss_pred CCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccccc
Q 004895 667 LSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 667 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~ 719 (724)
.++|+.|++++|.+. ..+.. + .++|+.|+|++|.++.+|..+
T Consensus 345 ~~sL~~L~Ls~N~L~------~LP~~---l--p~~L~~LdLs~N~Lt~LP~~l 386 (754)
T PRK15370 345 PPELQVLDVSKNQIT------VLPET---L--PPTITTLDVSRNALTNLPENL 386 (754)
T ss_pred cCcccEEECCCCCCC------cCChh---h--cCCcCEEECCCCcCCCCCHhH
Confidence 257777777775321 11211 1 257888999999988888654
No 24
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.05 E-value=2.3e-11 Score=121.72 Aligned_cols=151 Identities=24% Similarity=0.329 Sum_probs=116.1
Q ss_pred ccCceEEeccCCCcccCCCcc-cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEE
Q 004895 526 QKGPIAISLPYRDIQELPERL-ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLC 604 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 604 (724)
..-+..++++.|.+.++|+.+ .++.+.+..+ .+ +.....++.+++.++.|..|++++|-+..+|..++.+..||.|+
T Consensus 387 ~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~-ls-nn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 387 SEIVTSVNFSKNQLCELPKRLVELKELVTDLV-LS-NNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLN 464 (565)
T ss_pred hcceEEEecccchHhhhhhhhHHHHHHHHHHH-hh-cCccccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheec
Confidence 456888999999999998754 3444455444 22 23344556678888889999999888888898888888899999
Q ss_pred cCCcccCC-cccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCC
Q 004895 605 LDGWRLED-IAIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFS 680 (724)
Q Consensus 605 L~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 680 (724)
++.|.+.. |..+..+.-|+++-.+.|.+..+|++ +.++.+|..|++.+ +.+..+||. +|+|++|++|.+++|.+
T Consensus 465 lS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~-LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 465 LSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPI-LGNMTNLRHLELDGNPF 540 (565)
T ss_pred ccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChh-hccccceeEEEecCCcc
Confidence 98888877 55666677788888888888888665 88888888888887 567778775 78888888888888653
No 25
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.05 E-value=5.4e-09 Score=121.63 Aligned_cols=268 Identities=15% Similarity=0.221 Sum_probs=158.2
Q ss_pred ccchHHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEE---EecCCC---hHHHHHHH
Q 004895 162 FNSRKKIFQDVIEALK---DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAE---ITKNPD---AQKIQGEL 232 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~---vs~~~~---~~~l~~~i 232 (724)
++||+.+++.|...+. .+...++.+.|..|+|||+++++|......+ +...+-.. ...+.. ..+.++++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~--~~~~i~~~f~q~~~~ipl~~lvq~~r~l 79 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ--RGYFIKGKFDQFERNIPLSPLVQAFRDL 79 (849)
T ss_pred CCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc--ceeeeHhhcccccCCCchHHHHHHHHHH
Confidence 6799999999998886 4566799999999999999999999987643 11111111 112221 12222333
Q ss_pred HHhh-------------------CCC------------------CCC----CchhHH-----HHHHHHHHHhcCCcEEEE
Q 004895 233 ASDL-------------------GMN------------------FDS----NDLIYH-----RAKQLCQRLKKEKRVLII 266 (724)
Q Consensus 233 ~~~l-------------------~~~------------------~~~----~~~~~~-----~~~~l~~~l~~~kr~LlV 266 (724)
..++ +.. .+. +..... ....+.......++.++|
T Consensus 80 ~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~ 159 (849)
T COG3899 80 MGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIV 159 (849)
T ss_pred HHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEE
Confidence 3222 111 000 000001 112233333456799999
Q ss_pred Eccc-ccccc-ccccccccCCCCcCCCCCCCCCcEEEEEeccc-chhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCC
Q 004895 267 LDNI-WTKLE-LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSR-DLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTK 343 (724)
Q Consensus 267 lDdv-~~~~~-~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~ 343 (724)
+||+ |-+.. ++-+........ ......+..-.+.|.+.. ............+.|.||+..+...+.....+....
T Consensus 160 leDlhWaD~~SL~lL~~lm~~~~--~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~ 237 (849)
T COG3899 160 LEDLHWADSASLKLLQLLMDRIA--IGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL 237 (849)
T ss_pred EecccccChhHHHHHHHHHHhcc--hhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc
Confidence 9999 43321 111111111000 000001111123333332 111223345578999999999999999999875332
Q ss_pred CCCchhHHHHHHHHhCCchhHHHHHHHHhcCC-------CHHHHHHHHHHHhcCccccccCCCcccchhhHhhhhhcHHH
Q 004895 344 ASDFRPLAEEIVGKCGGLPVALSTVANALKNK-------SPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDDE 416 (724)
Q Consensus 344 ~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~-------~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 416 (724)
.+ .+....|+++..|+|+.+..+-..+... +...|..-..++... +..+++...+..-.+.||..
T Consensus 238 ~~--~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~------~~~~~vv~~l~~rl~kL~~~ 309 (849)
T COG3899 238 LP--APLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGIL------ATTDAVVEFLAARLQKLPGT 309 (849)
T ss_pred cc--chHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCc------hhhHHHHHHHHHHHhcCCHH
Confidence 22 4678999999999999999999988742 334444332222211 11222555688899999999
Q ss_pred HHHHHHhhccCCCCCcccHHHHHHHHh
Q 004895 417 AKSLFLLCGLHREGRPIHVHYLLRYVM 443 (724)
Q Consensus 417 ~k~cf~~~s~fp~~~~i~~~~Li~~W~ 443 (724)
.++.+...|++.. .|+.+.|...|-
T Consensus 310 t~~Vl~~AA~iG~--~F~l~~La~l~~ 334 (849)
T COG3899 310 TREVLKAAACIGN--RFDLDTLAALAE 334 (849)
T ss_pred HHHHHHHHHHhCc--cCCHHHHHHHHh
Confidence 9999999999987 677888877664
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.05 E-value=2.5e-10 Score=106.09 Aligned_cols=128 Identities=24% Similarity=0.289 Sum_probs=40.9
Q ss_pred CCCCceEEEcCCCcCCCCCcccc-CCCCCcEEEcCCcccCCcccccCCCCCcEEEccCCcCcccchhhh-cCCCCCeEcc
Q 004895 573 GTEELKVLDFTGIRFSPLPSSLG-RLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIG-QLTRLQLLDL 650 (724)
Q Consensus 573 ~l~~L~~L~l~~~~~~~lp~~i~-~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~~L~l 650 (724)
+...++.|+|++|.|+.+. .++ .+.+|+.|+|++|.++.++.+..+++|++|++++|.|++++..+. .+++|++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3445677777777776553 344 466777777777777776667777777777777777777755543 5677777777
Q ss_pred CCCCCCcccC-hHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEe
Q 004895 651 SNCSSLVVIA-PNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEI 707 (724)
Q Consensus 651 ~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l 707 (724)
++| .+..+. -..+..+++|+.|++.+|+. ......-.--+..+++|+.||-
T Consensus 96 ~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv-----~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 96 SNN-KISDLNELEPLSSLPKLRVLSLEGNPV-----CEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TTS----SCCCCGGGGG-TT--EEE-TT-GG-----GGSTTHHHHHHHH-TT-SEETT
T ss_pred cCC-cCCChHHhHHHHcCCCcceeeccCCcc-----cchhhHHHHHHHHcChhheeCC
Confidence 763 333221 12356677777777777542 2111222333445666666664
No 27
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.00 E-value=8.2e-11 Score=129.49 Aligned_cols=171 Identities=21% Similarity=0.299 Sum_probs=116.6
Q ss_pred CceEEeccCCCcccCCCcc-cCCCccEEEEecccccccccchhhhc-------------------------CCCCceEEE
Q 004895 528 GPIAISLPYRDIQELPERL-ECPQLKLFLLFAKYDSTLQISDHFFE-------------------------GTEELKVLD 581 (724)
Q Consensus 528 ~~~~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~-------------------------~l~~L~~L~ 581 (724)
.++.+++..|++..+|... +.+.|++|.+.. +....+|+.+|. .+..|+.|.
T Consensus 288 ~L~~l~~~~nel~yip~~le~~~sL~tLdL~~--N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Ly 365 (1081)
T KOG0618|consen 288 SLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS--NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELY 365 (1081)
T ss_pred hHHHHHhhhhhhhhCCCcccccceeeeeeehh--ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHH
Confidence 4555555566666655444 366666666622 222233333222 234466667
Q ss_pred cCCCcCC-CCCccccCCCCCcEEEcCCcccCC-c-ccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcc
Q 004895 582 FTGIRFS-PLPSSLGRLINLQTLCLDGWRLED-I-AIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVV 658 (724)
Q Consensus 582 l~~~~~~-~lp~~i~~l~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~ 658 (724)
+.+|.++ ..-+-+.++.||+.|+|++|.+.. | ..+.++..|+.|+||||+++.+|..+.++..|++|...+ |.+..
T Consensus 366 lanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~ 444 (1081)
T KOG0618|consen 366 LANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLS 444 (1081)
T ss_pred HhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceee
Confidence 7777776 222346788899999999999887 4 567889999999999999999999999999999998887 56777
Q ss_pred cChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccc
Q 004895 659 IAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRD 711 (724)
Q Consensus 659 ~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~ 711 (724)
+| + +..++.|+.+|++.|..... .+.+.-.-++|+.||+++|.
T Consensus 445 fP-e-~~~l~qL~~lDlS~N~L~~~--------~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 445 FP-E-LAQLPQLKVLDLSCNNLSEV--------TLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred ch-h-hhhcCcceEEecccchhhhh--------hhhhhCCCcccceeeccCCc
Confidence 76 3 78999999999988743222 11111112789999999986
No 28
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.99 E-value=1.1e-09 Score=124.83 Aligned_cols=164 Identities=21% Similarity=0.283 Sum_probs=101.6
Q ss_pred CceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCC
Q 004895 528 GPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDG 607 (724)
Q Consensus 528 ~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~ 607 (724)
.++.|.+++|.+..+|... .++|+.|.+. .+....+|..+. .+|+.|++++|.++.+|..+. .+|++|++++
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l-~s~L~~L~Ls--~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~ 313 (754)
T PRK15370 242 TIQEMELSINRITELPERL-PSALQSLDLF--HNKISCLPENLP---EELRYLSVYDNSIRTLPAHLP--SGITHLNVQS 313 (754)
T ss_pred cccEEECcCCccCcCChhH-hCCCCEEECc--CCccCccccccC---CCCcEEECCCCccccCcccch--hhHHHHHhcC
Confidence 4555555555555444332 2345555552 222233333221 356666666666665554432 2456666666
Q ss_pred cccCCc-ccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCcccccc
Q 004895 608 WRLEDI-AIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVE 686 (724)
Q Consensus 608 ~~l~~~-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~ 686 (724)
|.++.+ ..+ .++|++|++++|.++.+|..+. ++|+.|++++| .+..+|.. + .++|+.|++++|.+.
T Consensus 314 N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N-~L~~LP~~-l--p~~L~~LdLs~N~Lt----- 380 (754)
T PRK15370 314 NSLTALPETL--PPGLKTLEAGENALTSLPASLP--PELQVLDVSKN-QITVLPET-L--PPTITTLDVSRNALT----- 380 (754)
T ss_pred CccccCCccc--cccceeccccCCccccCChhhc--CcccEEECCCC-CCCcCChh-h--cCCcCEEECCCCcCC-----
Confidence 665552 222 3689999999999999998764 79999999995 57777653 3 368999999997432
Q ss_pred CCccchHHhhcCCCCCcEEEeecccccccccc
Q 004895 687 GGSNASLAELKGLSKLTTLEIDVRDAEMLRRI 718 (724)
Q Consensus 687 ~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~ 718 (724)
..|..+. ..|+.|++++|.+..+|..
T Consensus 381 -~LP~~l~-----~sL~~LdLs~N~L~~LP~s 406 (754)
T PRK15370 381 -NLPENLP-----AALQIMQASRNNLVRLPES 406 (754)
T ss_pred -CCCHhHH-----HHHHHHhhccCCcccCchh
Confidence 1222222 2588999999999988864
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.94 E-value=9.1e-10 Score=102.39 Aligned_cols=124 Identities=28% Similarity=0.397 Sum_probs=45.9
Q ss_pred CCCcCCCCCccccCCCCCcEEEcCCcccCCccccc-CCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccCh
Q 004895 583 TGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVG-QLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAP 661 (724)
Q Consensus 583 ~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~~~~~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~ 661 (724)
..+.|...|. +.+..+++.|+|++|.|+.+..++ .+.+|+.|++++|.|+.++ ++..+++|+.|++++ |.++.+.+
T Consensus 5 t~~~i~~~~~-~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~ 81 (175)
T PF14580_consen 5 TANMIEQIAQ-YNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISE 81 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CH
T ss_pred cccccccccc-cccccccccccccccccccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCcccc
Confidence 3444454543 455667899999999999988888 6899999999999999985 588999999999999 67787765
Q ss_pred HHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccccc
Q 004895 662 NVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLR 716 (724)
Q Consensus 662 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp 716 (724)
.....+++|++|++++|.+.. ...+..|..+++|+.|++.+|.+...+
T Consensus 82 ~l~~~lp~L~~L~L~~N~I~~-------l~~l~~L~~l~~L~~L~L~~NPv~~~~ 129 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNKISD-------LNELEPLSSLPKLRVLSLEGNPVCEKK 129 (175)
T ss_dssp HHHHH-TT--EEE-TTS---S-------CCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred chHHhCCcCCEEECcCCcCCC-------hHHhHHHHcCCCcceeeccCCcccchh
Confidence 433579999999999875311 124677888999999999999875443
No 30
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.88 E-value=9.4e-09 Score=116.75 Aligned_cols=134 Identities=20% Similarity=0.205 Sum_probs=97.3
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
+.+++.|++.+|.+..+|. ..++|++|.+. .+....+|. ..++|+.|++++|.+..+|.. ..+|+.|++
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs--~N~LtsLP~----lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPA--LPPELRTLEVS--GNQLTSLPV----LPPGLLELSIFSNPLTHLPAL---PSGLCKLWI 289 (788)
T ss_pred hcCCCEEEccCCcCCCCCC--CCCCCcEEEec--CCccCcccC----cccccceeeccCCchhhhhhc---hhhcCEEEC
Confidence 4578888888888888875 35788888883 334445553 246788888888888877763 356788899
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCC
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFS 680 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 680 (724)
++|.++.++. .+++|++|++++|.++.+|... .+|+.|++++ +.+..+|. -..+|+.|++++|.+
T Consensus 290 s~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~lp---~~L~~L~Ls~-N~L~~LP~----lp~~Lq~LdLS~N~L 354 (788)
T PRK15387 290 FGNQLTSLPV--LPPGLQELSVSDNQLASLPALP---SELCKLWAYN-NQLTSLPT----LPSGLQELSVSDNQL 354 (788)
T ss_pred cCCccccccc--cccccceeECCCCccccCCCCc---cccccccccc-Cccccccc----cccccceEecCCCcc
Confidence 9998887443 3568999999999998887633 4577888888 45666653 125799999998753
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.87 E-value=3.3e-10 Score=109.24 Aligned_cols=134 Identities=19% Similarity=0.215 Sum_probs=107.6
Q ss_pred CCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCC
Q 004895 574 TEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNC 653 (724)
Q Consensus 574 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~ 653 (724)
.+.|..|||++|.|+.+-.+..-++.++.|++++|.+....++..|++|+.|||++|.++++-..=.+|-|.++|.|++
T Consensus 283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~- 361 (490)
T KOG1259|consen 283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ- 361 (490)
T ss_pred HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh-
Confidence 4679999999999998888888889999999999999888889999999999999998887755556778889999998
Q ss_pred CCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 654 SSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 654 ~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
|.+..+ .++++|.+|..|++.+|.+.. -.....+.+|+-|.+|.+.+|.+..+|.
T Consensus 362 N~iE~L--SGL~KLYSLvnLDl~~N~Ie~-------ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NKIETL--SGLRKLYSLVNLDLSSNQIEE-------LDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhHhhh--hhhHhhhhheeccccccchhh-------HHHhcccccccHHHHHhhcCCCccccch
Confidence 566665 347899999999998864311 1234456778888888888998877664
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.85 E-value=8.9e-09 Score=119.48 Aligned_cols=163 Identities=24% Similarity=0.345 Sum_probs=121.2
Q ss_pred cccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCc--CCCCCc-cccCCCCCcEEEcCCcc-cCC-c
Q 004895 539 IQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIR--FSPLPS-SLGRLINLQTLCLDGWR-LED-I 613 (724)
Q Consensus 539 ~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~lp~-~i~~l~~L~~L~L~~~~-l~~-~ 613 (724)
....|+.......|...+. ++....++.. ...+.|+.|-+.+|. +..++. .|..+++|++|+|++|. +.. |
T Consensus 513 ~~~~~~~~~~~~~rr~s~~--~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLM--NNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccccccchhheeEEEEe--ccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 3345655566677777662 2222333332 233468899988886 555554 47789999999999985 566 7
Q ss_pred ccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchH
Q 004895 614 AIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASL 693 (724)
Q Consensus 614 ~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 693 (724)
.+|+.|.+|++|+++++.++.+|.++.+|++|.+|++..+..+... ++.+..|++|++|.+.... .......+
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~------~~~~~~~l 661 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA------LSNDKLLL 661 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc------cccchhhH
Confidence 8999999999999999999999999999999999999987666655 5667779999999987642 11234467
Q ss_pred HhhcCCCCCcEEEeecccc
Q 004895 694 AELKGLSKLTTLEIDVRDA 712 (724)
Q Consensus 694 ~~L~~L~~L~~L~l~~n~~ 712 (724)
.++.+|++|+.|.+.....
T Consensus 662 ~el~~Le~L~~ls~~~~s~ 680 (889)
T KOG4658|consen 662 KELENLEHLENLSITISSV 680 (889)
T ss_pred Hhhhcccchhhheeecchh
Confidence 7888888888887765543
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.85 E-value=3e-07 Score=102.39 Aligned_cols=243 Identities=17% Similarity=0.178 Sum_probs=134.3
Q ss_pred ccccchHHHHHHHHHHhc----C-CCccEEEEEcCCCCcHHHHHHHHHHHHhhc---cCCC--eEEEEEEecCCChHHHH
Q 004895 160 NIFNSRKKIFQDVIEALK----D-DKLNIIGVCGMGGVGKTTLVKQIAKQVMED---NVFD--KVVMAEITKNPDAQKIQ 229 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~l~ 229 (724)
..+.||++++++|...|. . ....++.|+|++|+|||+.++.|.+..... .... .+++|++....+...++
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 456799999999988875 2 233577899999999999999999876432 1222 25778877777888899
Q ss_pred HHHHHhhCCCCCCCc-hhHHHHHHHHHHHhc--CCcEEEEEcccccccc--ccccccccCCCCcCCCCCCCCCcEEEE--
Q 004895 230 GELASDLGMNFDSND-LIYHRAKQLCQRLKK--EKRVLIILDNIWTKLE--LDKIGIPYGDVDEKDKNDDPRRCTIIL-- 302 (724)
Q Consensus 230 ~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~s~ilv-- 302 (724)
..|.+++....+... ........++..+.. +...+||||+++.... -+.+...+.+ ....+++|++
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~-------~~~s~SKLiLIG 907 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDW-------PTKINSKLVLIA 907 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHH-------hhccCCeEEEEE
Confidence 999998844333222 123344555555422 2346999999975431 0111111110 0122444433
Q ss_pred Eecccchh----hh--hcCCCceEecCCCCHHHHHHHHHHHhCCCC---CCCCchhHHHHHHHHhCCchhHHHHHHHHhc
Q 004895 303 TSRSRDLL----CI--DMNSQKMFWIDALSEEEALQLFEKIVGEST---KASDFRPLAEEIVGKCGGLPVALSTVANALK 373 (724)
Q Consensus 303 TtR~~~v~----~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~---~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~ 373 (724)
+|...... .. .......+..+|++.++..+++..++.... .+..++-+|+.++...|-.-.||.++-.+..
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFE 987 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHh
Confidence 33321111 00 011123467799999999999999986321 1111222333333333444455555544443
Q ss_pred CC-----CHHHHHHHHHHHhcCccccccCCCcccchhhHhhhhhcHHHHHHHHHh
Q 004895 374 NK-----SPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDDEAKSLFLL 423 (724)
Q Consensus 374 ~~-----~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~ 423 (724)
.+ ..+....+.+.+. ...+.-....||.+.|-.+..
T Consensus 988 ikegskVT~eHVrkAleeiE--------------~srI~e~IktLPlHqKLVLlA 1028 (1164)
T PTZ00112 988 NKRGQKIVPRDITEATNQLF--------------DSPLTNAINYLPWPFKMFLTC 1028 (1164)
T ss_pred hcCCCccCHHHHHHHHHHHH--------------hhhHHHHHHcCCHHHHHHHHH
Confidence 21 2223333332221 122344556788887766553
No 34
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.84 E-value=1.3e-08 Score=115.52 Aligned_cols=169 Identities=20% Similarity=0.172 Sum_probs=108.5
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
+.+++.|.+++|.+..+|.. .++|+.|.++. +....+|. ....|+.|++++|+++.+|.. +++|++|+|
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~--N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdL 309 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL--PPGLLELSIFS--NPLTHLPA----LPSGLCKLWIFGNQLTSLPVL---PPGLQELSV 309 (788)
T ss_pred CCCCcEEEecCCccCcccCc--ccccceeeccC--Cchhhhhh----chhhcCEEECcCCcccccccc---ccccceeEC
Confidence 57899999999999988753 47899999843 33344443 235788999999999998863 468999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccc
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKV 685 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 685 (724)
++|.++.++.+ ..+|..|++++|.++.+|.. ..+|++|++++ +.+..+|+. .++|+.|++++|.+.. +
T Consensus 310 S~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~l----p~~L~~L~Ls~N~L~~--L 377 (788)
T PRK15387 310 SDNQLASLPAL--PSELCKLWAYNNQLTSLPTL---PSGLQELSVSD-NQLASLPTL----PSELYKLWAYNNRLTS--L 377 (788)
T ss_pred CCCccccCCCC--cccccccccccCcccccccc---ccccceEecCC-CccCCCCCC----Ccccceehhhcccccc--C
Confidence 99998874332 24577788888888877742 24678888887 456666531 1334444444432211 0
Q ss_pred cCC---------ccchHHhhc-CCCCCcEEEeeccccccccc
Q 004895 686 EGG---------SNASLAELK-GLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 686 ~~~---------~~~~l~~L~-~L~~L~~L~l~~n~~~~lp~ 717 (724)
... ....+..+. ..++|+.|++++|.++.+|.
T Consensus 378 P~l~~~L~~LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 378 PALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM 419 (788)
T ss_pred cccccccceEEecCCcccCCCCcccCCCEEEccCCcCCCCCc
Confidence 000 000011111 12467788888888877775
No 35
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.84 E-value=5e-08 Score=105.56 Aligned_cols=181 Identities=15% Similarity=0.173 Sum_probs=109.3
Q ss_pred CcccccccchHHHHHH---HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQD---VIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 232 (724)
|.....++|++..+.. +..++.......+.++|++|+||||+|+.+++..... |+.++....-.+-++.+
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~-------~~~l~a~~~~~~~ir~i 80 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAP-------FEALSAVTSGVKDLREV 80 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCC-------EEEEecccccHHHHHHH
Confidence 3445678898887665 7777777777788999999999999999999876421 33333221111111222
Q ss_pred HHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEE--Eecccc
Q 004895 233 ASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIIL--TSRSRD 308 (724)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~ 308 (724)
++ ........+++.+|++|+++... ..+.+...+ ..+..+++ ||.+..
T Consensus 81 i~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l-----------e~~~iilI~att~n~~ 132 (413)
T PRK13342 81 IE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV-----------EDGTITLIGATTENPS 132 (413)
T ss_pred HH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh-----------hcCcEEEEEeCCCChh
Confidence 21 11111223577999999998653 233332221 12344444 334332
Q ss_pred h--hhhhcCCCceEecCCCCHHHHHHHHHHHhCCCC-CC-CCchhHHHHHHHHhCCchhHHHHHHHH
Q 004895 309 L--LCIDMNSQKMFWIDALSEEEALQLFEKIVGEST-KA-SDFRPLAEEIVGKCGGLPVALSTVANA 371 (724)
Q Consensus 309 v--~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~-~~l~~~~~~I~~~c~GlPLai~~~~~~ 371 (724)
. ..........+.+.+++.++.+.++.+.+.... .. .--++..+.|++.|+|.|..+..+...
T Consensus 133 ~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 133 FEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred hhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1 111123346899999999999999998764211 11 223567788999999999776544433
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.82 E-value=8.4e-08 Score=97.42 Aligned_cols=175 Identities=16% Similarity=0.227 Sum_probs=108.7
Q ss_pred CcccccccchHHHHH---HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQ---DVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGE 231 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~ 231 (724)
|.....++|.+..+. -|..++..+.+.-..+||++|+||||||+.+....... |..+|... +.+++ ++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~-------f~~~sAv~~gvkdl-r~ 91 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA-------FEALSAVTSGVKDL-RE 91 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCc-------eEEeccccccHHHH-HH
Confidence 444566677665542 23445556788888999999999999999999866432 34444433 33333 23
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEE--Eeccc
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIIL--TSRSR 307 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv--TtR~~ 307 (724)
+++ .-.+....+++.+|++|.|..-+ +-+.+ .|. -..|.-|+| ||-++
T Consensus 92 i~e-----------------~a~~~~~~gr~tiLflDEIHRfnK~QQD~l-Lp~----------vE~G~iilIGATTENP 143 (436)
T COG2256 92 IIE-----------------EARKNRLLGRRTILFLDEIHRFNKAQQDAL-LPH----------VENGTIILIGATTENP 143 (436)
T ss_pred HHH-----------------HHHHHHhcCCceEEEEehhhhcChhhhhhh-hhh----------hcCCeEEEEeccCCCC
Confidence 322 12222233789999999997653 22333 332 445666665 55555
Q ss_pred chh--hhhcCCCceEecCCCCHHHHHHHHHHHhCCCC-----CCCCc-hhHHHHHHHHhCCchhHHH
Q 004895 308 DLL--CIDMNSQKMFWIDALSEEEALQLFEKIVGEST-----KASDF-RPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 308 ~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-----~~~~l-~~~~~~I~~~c~GlPLai~ 366 (724)
... ..-.+...++.+++|+.+|..+++.+.+.... ....+ ++...-|++.++|--.++-
T Consensus 144 sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL 210 (436)
T COG2256 144 SFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL 210 (436)
T ss_pred CeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH
Confidence 431 22245567999999999999999999543111 11112 3467788899988775543
No 37
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.80 E-value=2.5e-07 Score=102.61 Aligned_cols=188 Identities=18% Similarity=0.221 Sum_probs=116.3
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccC-------------------CCeEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNV-------------------FDKVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 215 (724)
+.....++|.+..++.|..++..+++ ..+.++|+.|+||||+|+.+.+....... |..++
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~Dvi 91 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYV 91 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEE
Confidence 44567889999999999999886664 45679999999999999999987643211 11133
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 293 (724)
+++.+....++++ +++++.. ...-..++.-++|||++.... .++.+...+..
T Consensus 92 EIDAas~rgVDdI-ReLIe~a-----------------~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-------- 145 (830)
T PRK07003 92 EMDAASNRGVDEM-AALLERA-----------------VYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-------- 145 (830)
T ss_pred EecccccccHHHH-HHHHHHH-----------------HhccccCCceEEEEeChhhCCHHHHHHHHHHHHh--------
Confidence 3333222222221 1121111 101112455689999998764 35544333322
Q ss_pred CCCCcEEEEEecccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch-hHHHHHHH
Q 004895 294 DPRRCTIILTSRSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP-VALSTVAN 370 (724)
Q Consensus 294 ~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~ 370 (724)
.....++|+||.+.. +...-.+....+++++++.++..+.+.+.+..+... --.+..+.|++.++|.. -|+.++-.
T Consensus 146 PP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~-id~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 146 PPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA-FEPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred cCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 334677777777654 322223445789999999999999999887543221 12567788999999866 45555433
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=3.7e-10 Score=118.10 Aligned_cols=170 Identities=24% Similarity=0.325 Sum_probs=99.8
Q ss_pred EeccCCCcccCCCcc-cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCccc
Q 004895 532 ISLPYRDIQELPERL-ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRL 610 (724)
Q Consensus 532 l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l 610 (724)
..++.|.+.++|... .+..|.++.+. .+..-.+|.. ..++..|.+|||+.|++..+|..+|.|+ |+.|-+++|++
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy--~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILY--HNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHH--hccceecchh-hhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcc
Confidence 445555555555433 34445555552 2222233332 4566667777777777777776666654 66677777766
Q ss_pred CC-cccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCc
Q 004895 611 ED-IAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGS 689 (724)
Q Consensus 611 ~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 689 (724)
+. |..++.+..|..||.+.|.+.++|..++.|.+|+.|++.. +.+..+|++ +..| .|..||++.|.+ .
T Consensus 156 ~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrR-n~l~~lp~E-l~~L-pLi~lDfScNki-----s--- 224 (722)
T KOG0532|consen 156 TSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEE-LCSL-PLIRLDFSCNKI-----S--- 224 (722)
T ss_pred ccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHH-HhCC-ceeeeecccCce-----e---
Confidence 66 5666666677777777777777777777777777777666 455666655 3433 466666666421 1
Q ss_pred cchHHhhcCCCCCcEEEeeccccccccc
Q 004895 690 NASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 690 ~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
....++.+|++|+.|-+.+|.+.+=|.
T Consensus 225 -~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 225 -YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred -ecchhhhhhhhheeeeeccCCCCCChH
Confidence 122345566666777777776655554
No 39
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=1.2e-08 Score=107.28 Aligned_cols=185 Identities=17% Similarity=0.101 Sum_probs=121.6
Q ss_pred ccCceEEeccCCCcccC-CCc-ccC---CCccEEEEeccccccc--ccchhhhcCC-CCceEEEcCCCcCC-----CCCc
Q 004895 526 QKGPIAISLPYRDIQEL-PER-LEC---PQLKLFLLFAKYDSTL--QISDHFFEGT-EELKVLDFTGIRFS-----PLPS 592 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~-~~~-~~~---~~Lr~L~l~~~~~~~~--~~~~~~~~~l-~~L~~L~l~~~~~~-----~lp~ 592 (724)
..+++++++++|.+... +.. ..+ ++|+.|.+..+..... ......+..+ ++|+.|++++|.++ .++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 35888899988877531 111 122 4599999943321111 1112234566 88999999999887 3455
Q ss_pred cccCCCCCcEEEcCCcccCC------cccccCCCCCcEEEccCCcCc-----ccchhhhcCCCCCeEccCCCCCCcccCh
Q 004895 593 SLGRLINLQTLCLDGWRLED------IAIVGQLKKLEILSLRGAEIK-----QLPLQIGQLTRLQLLDLSNCSSLVVIAP 661 (724)
Q Consensus 593 ~i~~l~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~l~~~~~ 661 (724)
.+..+.+|++|++++|.++. +..+..+++|++|++++|.++ .++..+.++++|++|++++|. +.....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~ 238 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGA 238 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHH
Confidence 66778899999999998874 234566679999999999876 344567778899999999964 443211
Q ss_pred HHh-hC----CCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccc
Q 004895 662 NVI-SK----LSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEML 715 (724)
Q Consensus 662 ~~i-~~----l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~l 715 (724)
..+ .. .+.|++|++++|.+... ........+..+++|+.++++.|.++.-
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~----~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDD----GAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcH----HHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 112 22 47899999988743211 1122234566778999999999987643
No 40
>PRK06893 DNA replication initiation factor; Validated
Probab=98.73 E-value=1.7e-07 Score=92.84 Aligned_cols=155 Identities=14% Similarity=0.189 Sum_probs=94.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK 258 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 258 (724)
...+.+.|+|++|+|||+|++.+++....+ ...+.|+++.... .. ...+.+.+.
T Consensus 37 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~~~~~~---~~---------------------~~~~~~~~~ 90 (229)
T PRK06893 37 LQQPFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIPLSKSQ---YF---------------------SPAVLENLE 90 (229)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEeeHHHhh---hh---------------------hHHHHhhcc
Confidence 344678999999999999999999987653 2346777764210 00 011222222
Q ss_pred cCCcEEEEEcccccc---ccccc-cccccCCCCcCCCCCCCCCcEEEEEeccc----------chhhhhcCCCceEecCC
Q 004895 259 KEKRVLIILDNIWTK---LELDK-IGIPYGDVDEKDKNDDPRRCTIILTSRSR----------DLLCIDMNSQKMFWIDA 324 (724)
Q Consensus 259 ~~kr~LlVlDdv~~~---~~~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~----------~v~~~~~~~~~~~~l~~ 324 (724)
+.-+|+|||+|.. ..|+. +...+... ...+..+|++|.+. .+.. .+.....+++++
T Consensus 91 --~~dlLilDDi~~~~~~~~~~~~l~~l~n~~-------~~~~~~illits~~~p~~l~~~~~~L~s-Rl~~g~~~~l~~ 160 (229)
T PRK06893 91 --QQDLVCLDDLQAVIGNEEWELAIFDLFNRI-------KEQGKTLLLISADCSPHALSIKLPDLAS-RLTWGEIYQLND 160 (229)
T ss_pred --cCCEEEEeChhhhcCChHHHHHHHHHHHHH-------HHcCCcEEEEeCCCChHHccccchhHHH-HHhcCCeeeCCC
Confidence 3359999999874 33442 21111110 12345555544433 2222 233456889999
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHH
Q 004895 325 LSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVAN 370 (724)
Q Consensus 325 L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 370 (724)
+++++.++++++.+....-. --+++..-|++.+.|..-.+..+-.
T Consensus 161 pd~e~~~~iL~~~a~~~~l~-l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 161 LTDEQKIIVLQRNAYQRGIE-LSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred CCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999988633211 1256788899999887766554433
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=6e-10 Score=116.53 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=121.1
Q ss_pred ccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC-cccccCCCCCcEEEccCCcCcccch
Q 004895 559 KYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED-IAIVGQLKKLEILSLRGAEIKQLPL 637 (724)
Q Consensus 559 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~ 637 (724)
+.++...+|.. ++.|..|..+.|..|.+..+|..++++..|.||+|+.|.++. |..+|.|+ |+.|-+++|+++.+|.
T Consensus 83 srNR~~elp~~-~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~ 160 (722)
T KOG0532|consen 83 SRNRFSELPEE-ACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPE 160 (722)
T ss_pred cccccccCchH-HHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCc
Confidence 33445556654 566788999999999999999999999999999999999988 67788776 9999999999999999
Q ss_pred hhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 638 QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 638 ~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
.|+.+..|.+|+.+.| .+..+|+. ++.+.+|+.|.+..|.. .....+|..| .|.+||+++|++..+|-
T Consensus 161 ~ig~~~tl~~ld~s~n-ei~slpsq-l~~l~slr~l~vrRn~l---------~~lp~El~~L-pLi~lDfScNkis~iPv 228 (722)
T KOG0532|consen 161 EIGLLPTLAHLDVSKN-EIQSLPSQ-LGYLTSLRDLNVRRNHL---------EDLPEELCSL-PLIRLDFSCNKISYLPV 228 (722)
T ss_pred ccccchhHHHhhhhhh-hhhhchHH-hhhHHHHHHHHHhhhhh---------hhCCHHHhCC-ceeeeecccCceeecch
Confidence 9999999999999985 56778776 89999999998877532 1223455544 48899999999999986
Q ss_pred cc
Q 004895 718 IW 719 (724)
Q Consensus 718 ~~ 719 (724)
.+
T Consensus 229 ~f 230 (722)
T KOG0532|consen 229 DF 230 (722)
T ss_pred hh
Confidence 65
No 42
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.70 E-value=3.2e-07 Score=97.20 Aligned_cols=202 Identities=17% Similarity=0.148 Sum_probs=112.9
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCC-eEEEEEEecCCCh-HHHHH---
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFD-KVVMAEITKNPDA-QKIQG--- 230 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~l~~--- 230 (724)
|.....++|++..++.+..++..+..+.+.++|+.|+||||+|+.+++..... .+. ..+.+++++..+. .....
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~ 89 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGD-PWENNFTEFNVADFFDQGKKYLVEDP 89 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCc-ccccceEEechhhhhhcchhhhhcCc
Confidence 34456788999999999998887776778999999999999999999887532 222 2445555432110 00000
Q ss_pred HHHHhhCCCCCCCchhHHHHHHHHHHHh-----cCCcEEEEEcccccccc--ccccccccCCCCcCCCCCCCCCcEEEEE
Q 004895 231 ELASDLGMNFDSNDLIYHRAKQLCQRLK-----KEKRVLIILDNIWTKLE--LDKIGIPYGDVDEKDKNDDPRRCTIILT 303 (724)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-----~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~s~ilvT 303 (724)
.....++...............+.+... .+.+-+||+||+..... ...+...+.. ....+++|+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~--------~~~~~~~Il~ 161 (337)
T PRK12402 90 RFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ--------YSRTCRFIIA 161 (337)
T ss_pred chhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh--------ccCCCeEEEE
Confidence 0000000000000001112222222211 13345899999965421 2222222211 2334667777
Q ss_pred ecccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHH
Q 004895 304 SRSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALST 367 (724)
Q Consensus 304 tR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 367 (724)
+.... +..........+.+.+++.++...++.+.+...... --.+..+.+++.++|.+-.+..
T Consensus 162 ~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 162 TRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD-YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred eCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 75432 211112334578899999999999998876532221 1256788999999987765543
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=5.7e-09 Score=106.20 Aligned_cols=185 Identities=23% Similarity=0.146 Sum_probs=106.2
Q ss_pred ccCceEEeccCCCcccCCC---cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc--ccCCCCC
Q 004895 526 QKGPIAISLPYRDIQELPE---RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS--LGRLINL 600 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~---~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~~L 600 (724)
.++++.+++.++.+...+. ...|++++.|++..+-.........+...+++|+.|+++.|.+...-++ -..+.+|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4678888888887766552 3478899999884333333334445677888999999998887633221 2357788
Q ss_pred cEEEcCCcccCC---cccccCCCCCcEEEccCCc-CcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEcc
Q 004895 601 QTLCLDGWRLED---IAIVGQLKKLEILSLRGAE-IKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMG 676 (724)
Q Consensus 601 ~~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~ 676 (724)
+.|.|+.|.++. ....-.+++|+.|++.+|. +..--.....+..|+.|+|++|+.+..-....++.++.|+.|.++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 888888888765 2344456666666666662 221111223345566666666443322211235666666666665
Q ss_pred CCCCccccccCCccchHHhhcCCCCCcEEEeecccc
Q 004895 677 DSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDA 712 (724)
Q Consensus 677 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~ 712 (724)
.|.... +......+......+++|+.|++.-|.+
T Consensus 280 ~tgi~s--i~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 280 STGIAS--IAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred ccCcch--hcCCCccchhhhcccccceeeecccCcc
Confidence 543211 1112222333344555666666666554
No 44
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.70 E-value=2.2e-09 Score=118.49 Aligned_cols=181 Identities=19% Similarity=0.203 Sum_probs=113.9
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcC
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLD 606 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 606 (724)
..+++|....|.+..+....-..+|+++.+ +.+....+| ++...+.+|..++..+|.+..+|..+..+.+|++|.+.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~di--s~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDI--SHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeec--chhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence 356666666666654433333456777777 444555566 67777888888888888888888888888888888888
Q ss_pred CcccCC-cccccCCCCCcEEEccCCcCcccchhhhc-CC-CCCeEc------------------------cCCCCCCccc
Q 004895 607 GWRLED-IAIVGQLKKLEILSLRGAEIKQLPLQIGQ-LT-RLQLLD------------------------LSNCSSLVVI 659 (724)
Q Consensus 607 ~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~-l~-~L~~L~------------------------l~~~~~l~~~ 659 (724)
+|.++. |+....+.+|++|+|..|.+..+|..+-. +. .|+.|+ +.+ |.++.-
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~ 374 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDS 374 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Cccccc
Confidence 888777 56666688888888888888777764322 11 133333 333 222221
Q ss_pred ChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccccc
Q 004895 660 APNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 660 ~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~ 719 (724)
--..+-+..+|++|++++|..+.- .-..+.++..|+.|++|+|.++.+|..+
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~f--------pas~~~kle~LeeL~LSGNkL~~Lp~tv 426 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSF--------PASKLRKLEELEELNLSGNKLTTLPDTV 426 (1081)
T ss_pred chhhhccccceeeeeecccccccC--------CHHHHhchHHhHHHhcccchhhhhhHHH
Confidence 111256666777777776543211 1134556667777777777777777544
No 45
>PRK04195 replication factor C large subunit; Provisional
Probab=98.67 E-value=2e-06 Score=95.06 Aligned_cols=186 Identities=19% Similarity=0.174 Sum_probs=113.6
Q ss_pred CcccccccchHHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKD----DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
|.....++|+++.++.+.+|+.. ...+.+.|+|++|+||||+|+.++++.. |+ ++-++.++..+... +..
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~~~~-i~~ 83 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRTADV-IER 83 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEcccccccHHH-HHH
Confidence 45567789999999999988862 2267899999999999999999999763 22 34445554433322 222
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc------ccccccccCCCCcCCCCCCCCCcEEEEEec
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE------LDKIGIPYGDVDEKDKNDDPRRCTIILTSR 305 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 305 (724)
++...... . .+...++.+||+|+++.... +..+...+ ...+..||+|+.
T Consensus 84 ~i~~~~~~---~------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l----------~~~~~~iIli~n 138 (482)
T PRK04195 84 VAGEAATS---G------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELI----------KKAKQPIILTAN 138 (482)
T ss_pred HHHHhhcc---C------------cccCCCCeEEEEecCcccccccchhHHHHHHHHH----------HcCCCCEEEecc
Confidence 22221100 0 01112568999999976532 22222111 122344666664
Q ss_pred ccc-hhh-hhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHhc
Q 004895 306 SRD-LLC-IDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALK 373 (724)
Q Consensus 306 ~~~-v~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~ 373 (724)
... ... ........+.+.+++.++....+.+.+......-+ .+....|++.++|..-.+......+.
T Consensus 139 ~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~-~eaL~~Ia~~s~GDlR~ain~Lq~~a 207 (482)
T PRK04195 139 DPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECD-DEALKEIAERSGGDLRSAINDLQAIA 207 (482)
T ss_pred CccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 432 111 11233467899999999999999887753222211 56789999999998776654444443
No 46
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.5e-05 Score=83.94 Aligned_cols=201 Identities=19% Similarity=0.219 Sum_probs=126.9
Q ss_pred ccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhC
Q 004895 162 FNSRKKIFQDVIEALK----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLG 237 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 237 (724)
+.+|+++++++...|. .+...-+.|+|.+|+|||+.++.+.+.......=..+++|++-...+..+++..|+++++
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 7799999999998775 344445999999999999999999999876422222899999999999999999999997
Q ss_pred CCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcccccccccc--ccccccCCCCcCCCCCCCCCcEEEEEecccch--h--
Q 004895 238 MNFDSNDLIYHRAKQLCQRLKK-EKRVLIILDNIWTKLELD--KIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL--L-- 310 (724)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~--~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v--~-- 310 (724)
..+.......+....+.+.+.. ++.+++|||++.....-. -+...+.. .....++|++-.-.... .
T Consensus 99 ~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~-------~~~~~~~v~vi~i~n~~~~~~~ 171 (366)
T COG1474 99 KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRA-------PGENKVKVSIIAVSNDDKFLDY 171 (366)
T ss_pred CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhh-------ccccceeEEEEEEeccHHHHHH
Confidence 4333333245556666666653 678999999997653321 11111111 01224444333332222 1
Q ss_pred -----hhhcCCCceEecCCCCHHHHHHHHHHHhCC----CCCCCCchhHHHHHHHHhCC-chhHHHHHHH
Q 004895 311 -----CIDMNSQKMFWIDALSEEEALQLFEKIVGE----STKASDFRPLAEEIVGKCGG-LPVALSTVAN 370 (724)
Q Consensus 311 -----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~----~~~~~~l~~~~~~I~~~c~G-lPLai~~~~~ 370 (724)
....+ ...+..+|-+.+|-.+++..++.. ....++.-+.+..++..-+| .-.||..+-.
T Consensus 172 ld~rv~s~l~-~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 172 LDPRVKSSLG-PSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred hhhhhhhccC-cceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 11122 234789999999999999998742 22223323334444444443 3445544433
No 47
>PLN03025 replication factor C subunit; Provisional
Probab=98.66 E-value=4.2e-07 Score=94.98 Aligned_cols=185 Identities=12% Similarity=0.100 Sum_probs=110.1
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCC-eEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFD-KVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|.++.+..|..++..+..+.+.++|++|+||||+|+.+++..... .|. .++-++.++..+... .+++++
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~eln~sd~~~~~~-vr~~i~ 86 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP-NYKEAVLELNASDDRGIDV-VRNKIK 86 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcc-cCccceeeecccccccHHH-HHHHHH
Confidence 44566788999988888888777777778899999999999999999987432 222 223333333333322 222222
Q ss_pred hhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccCCCCcCCCCCCCCCcEEEEEecccc-hhh
Q 004895 235 DLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD-LLC 311 (724)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~ 311 (724)
.+..... .+..++.-++|||+++.... .+.+...+.. ....+++++++.... +..
T Consensus 87 ~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~--------~~~~t~~il~~n~~~~i~~ 144 (319)
T PLN03025 87 MFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEI--------YSNTTRFALACNTSSKIIE 144 (319)
T ss_pred HHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhc--------ccCCceEEEEeCCccccch
Confidence 1110000 00113567999999976532 2222222211 234566776664432 211
Q ss_pred hhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 312 IDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 312 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
.-......++++++++++....+...+......- -++....|++.++|..-.+
T Consensus 145 ~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i-~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 145 PIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPY-VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 1122345789999999999999988875332211 1467888999999877444
No 48
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.63 E-value=4.7e-09 Score=101.39 Aligned_cols=129 Identities=22% Similarity=0.302 Sum_probs=104.4
Q ss_pred cCceEEeccCCCcccCCCcc-cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 527 KGPIAISLPYRDIQELPERL-ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
.-+..+++++|.++.+..+. -.|++|.|++ +.+....+.+ +..+.+|..|||++|.++++-.+=.+|-|.++|.|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~l--S~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLIL--SQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEec--cccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 46677889999998887666 4689999999 4444444433 67789999999999998877666677889999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCccc--chhhhcCCCCCeEccCCCCCCcccC
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQL--PLQIGQLTRLQLLDLSNCSSLVVIA 660 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~l--p~~i~~l~~L~~L~l~~~~~l~~~~ 660 (724)
+.|.++.++.+++|.+|.+||+++|+|..+ -.+|++|+.|.+|.|.+ |.+..++
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~-NPl~~~v 415 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG-NPLAGSV 415 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC-CCccccc
Confidence 999999999999999999999999999876 35699999999999988 4455544
No 49
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.62 E-value=7.4e-09 Score=103.94 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=18.5
Q ss_pred HhhcCCCCCcEEEeecccccccccc
Q 004895 694 AELKGLSKLTTLEIDVRDAEMLRRI 718 (724)
Q Consensus 694 ~~L~~L~~L~~L~l~~n~~~~lp~~ 718 (724)
+.+.+|..|++|++..|.++.+-..
T Consensus 316 ~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 316 GMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred HhhhccccceeeeecCCeeEEEecc
Confidence 3456788899999999988765443
No 50
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.4e-06 Score=92.49 Aligned_cols=195 Identities=15% Similarity=0.181 Sum_probs=109.3
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|.+..++.+...+..++. ..+.++|+.|+||||+|+.+++.......... ..+..-....++..
T Consensus 12 P~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~~ 84 (363)
T PRK14961 12 PQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIEK 84 (363)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHhc
Confidence 34456788999999999988876654 45689999999999999999987642111100 00000000111111
Q ss_pred hhCCCC---CC-CchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEe
Q 004895 235 DLGMNF---DS-NDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTS 304 (724)
Q Consensus 235 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 304 (724)
...... +. .....+....+.+.+. .+++-++|+|++.... .++.+...+.. ....+++|++|
T Consensus 85 ~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe--------~~~~~~fIl~t 156 (363)
T PRK14961 85 GLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE--------PPQHIKFILAT 156 (363)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc--------CCCCeEEEEEc
Confidence 100000 00 0001111222222221 2345699999997654 34444333322 33455666666
Q ss_pred cccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHH
Q 004895 305 RSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 305 R~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 366 (724)
.+.. +...-.+....+++.+++.++..+.+.+.+...... --++.+..|++.++|.|..+.
T Consensus 157 ~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~-i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 157 TDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID-TDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred CChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 4432 322212334689999999999999988876432211 124567889999999886443
No 51
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.61 E-value=3.7e-08 Score=103.52 Aligned_cols=179 Identities=23% Similarity=0.239 Sum_probs=116.8
Q ss_pred cCceEEeccCCCcccCCC--------cccCCCccEEEEecccccccccchhhhcCC---CCceEEEcCCCcCCC-----C
Q 004895 527 KGPIAISLPYRDIQELPE--------RLECPQLKLFLLFAKYDSTLQISDHFFEGT---EELKVLDFTGIRFSP-----L 590 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~--------~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~-----l 590 (724)
..++++.+..+.+...+. ...+++|+.|.+.. +.........+..+ ++|+.|++++|.+.. +
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~--~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSD--NALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccC--CCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 457888888776652111 12467899998832 22222222333333 449999999998872 3
Q ss_pred CccccCC-CCCcEEEcCCcccCC------cccccCCCCCcEEEccCCcCc-----ccchhhhcCCCCCeEccCCCCCCcc
Q 004895 591 PSSLGRL-INLQTLCLDGWRLED------IAIVGQLKKLEILSLRGAEIK-----QLPLQIGQLTRLQLLDLSNCSSLVV 658 (724)
Q Consensus 591 p~~i~~l-~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~l~~ 658 (724)
+..+..+ .+|+.|++++|.++. +..+..+.+|++|++++|.++ .++..+..+++|++|++++|. +..
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~ 207 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG-LTD 207 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc-cCh
Confidence 3456667 889999999998873 245677788999999999877 345566677899999999864 332
Q ss_pred cC----hHHhhCCCCCcEEEccCCCCccccccCCccchHH-hh-cCCCCCcEEEeeccccc
Q 004895 659 IA----PNVISKLSRLEELYMGDSFSQWDKVEGGSNASLA-EL-KGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 659 ~~----~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~L-~~L~~L~~L~l~~n~~~ 713 (724)
.. ...+..+++|++|++++|.. .+.....+. .+ ...++|+.|++++|.++
T Consensus 208 ~~~~~l~~~~~~~~~L~~L~ls~n~l-----~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 208 EGASALAETLASLKSLEVLNLGDNNL-----TDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHHHhcccCCCCEEecCCCcC-----chHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 21 23356788899999988642 211111111 11 13478999999999874
No 52
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=9.2e-07 Score=100.20 Aligned_cols=186 Identities=13% Similarity=0.208 Sum_probs=112.6
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccE-EEEEcCCCCcHHHHHHHHHHHHhhccC-------------------CCeEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNI-IGVCGMGGVGKTTLVKQIAKQVMEDNV-------------------FDKVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 215 (724)
|.....++|.+..+..|..++..+++.- +.++|+.|+||||+|+.+++....... |.-++
T Consensus 12 P~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 12 PATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 3446778899999999999888777655 479999999999999999988643211 11112
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 293 (724)
+++.+....+.++ ++|.+.+ ...-..+++-++|||++.... ..+.+...+-.
T Consensus 92 EidAas~~kVDdI-ReLie~v-----------------~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-------- 145 (944)
T PRK14949 92 EVDAASRTKVDDT-RELLDNV-----------------QYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-------- 145 (944)
T ss_pred EeccccccCHHHH-HHHHHHH-----------------HhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc--------
Confidence 2222111112111 2222211 111113567899999997652 34443322222
Q ss_pred CCCCcEEEEEecc-cchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 294 DPRRCTIILTSRS-RDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 294 ~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
....+++|++|.. ..+...-......|++.+++.++..+.+.+.+..... ..-.+....|++.++|.|.-+..+
T Consensus 146 PP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 146 PPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred cCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2334555555444 4443222334578999999999999999987753221 122467889999999988644433
No 53
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=3e-06 Score=93.29 Aligned_cols=184 Identities=14% Similarity=0.195 Sum_probs=111.9
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccC-------------------CCeEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNV-------------------FDKVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 215 (724)
|.....++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+++..-.... |--++
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDvi 90 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLI 90 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceE
Confidence 44567889999999999999886664 56789999999999999999987642111 11122
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 293 (724)
.++.+....++++ ++++... ...-..+++-++|+|++.... ..+.+...+..
T Consensus 91 EIDAAs~~~VddI-Reli~~~-----------------~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-------- 144 (702)
T PRK14960 91 EIDAASRTKVEDT-RELLDNV-----------------PYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-------- 144 (702)
T ss_pred EecccccCCHHHH-HHHHHHH-----------------hhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc--------
Confidence 2222222122111 1111111 101112466799999997653 33333222222
Q ss_pred CCCCcEEEEEecccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHH
Q 004895 294 DPRRCTIILTSRSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 294 ~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 366 (724)
...+.++|++|.+.. +..........+++.+++.++..+.+.+.+......- -.+....|++.++|.+..+.
T Consensus 145 PP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~i-d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 145 PPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAA-DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 234556777665532 2212234457899999999999999988875332221 24567889999999885543
No 54
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.59 E-value=7.1e-07 Score=88.65 Aligned_cols=171 Identities=12% Similarity=0.139 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCC
Q 004895 164 SRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSN 243 (724)
Q Consensus 164 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~ 243 (724)
+.+..++.+..++.......+.|+|++|+|||+||+.+++..... ....++++++.-.+ ..
T Consensus 21 ~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~--~~~~~~i~~~~~~~------~~----------- 81 (226)
T TIGR03420 21 GNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER--GKSAIYLPLAELAQ------AD----------- 81 (226)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEeHHHHHH------hH-----------
Confidence 345567777777655566789999999999999999999987532 33456666543211 00
Q ss_pred chhHHHHHHHHHHHhcCCcEEEEEccccccc---ccc-ccccccCCCCcCCCCCCCCCcEEEEEecccchh--------h
Q 004895 244 DLIYHRAKQLCQRLKKEKRVLIILDNIWTKL---ELD-KIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL--------C 311 (724)
Q Consensus 244 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~-~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~ 311 (724)
..+...+. +.-+||+||++... .|. .+...+... ...+..+|+||+..... .
T Consensus 82 -------~~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~-------~~~~~~iIits~~~~~~~~~~~~~L~ 145 (226)
T TIGR03420 82 -------PEVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRV-------REAGGRLLIAGRAAPAQLPLRLPDLR 145 (226)
T ss_pred -------HHHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHH-------HHcCCeEEEECCCChHHCCcccHHHH
Confidence 01112222 23489999997653 222 222111100 12234788888854311 1
Q ss_pred hhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHH
Q 004895 312 IDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVAN 370 (724)
Q Consensus 312 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 370 (724)
........++++++++++...+++..+..... +--++..+.|++.+.|.|..+.-+..
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAARRGL-QLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 11122357999999999999999876532111 11245678888889998877765543
No 55
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.59 E-value=4.3e-09 Score=105.56 Aligned_cols=89 Identities=21% Similarity=0.211 Sum_probs=69.6
Q ss_pred cccCCCCCcEEEccCCcCccc-chhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchH
Q 004895 615 IVGQLKKLEILSLRGAEIKQL-PLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASL 693 (724)
Q Consensus 615 ~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l 693 (724)
.|+.|++|+.|+|++|.|+.+ +..+..+..++.|.|.. +.+..+....+..+..|++|++.+|.+... ..
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~--------~~ 339 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTV--------AP 339 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEE--------ec
Confidence 367899999999999999977 55688899999999988 677888778888999999999998753221 23
Q ss_pred HhhcCCCCCcEEEeecccc
Q 004895 694 AELKGLSKLTTLEIDVRDA 712 (724)
Q Consensus 694 ~~L~~L~~L~~L~l~~n~~ 712 (724)
+.+..+..|.+|.+-.|.+
T Consensus 340 ~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ccccccceeeeeehccCcc
Confidence 4556677788888877754
No 56
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.59 E-value=1.6e-06 Score=91.07 Aligned_cols=184 Identities=12% Similarity=0.113 Sum_probs=109.0
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE--ecCCChHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI--TKNPDAQKIQGELA 233 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~l~~~i~ 233 (724)
|.....++|+++.++.+..++..+..+.+.|+|+.|+||||+|+.+++...... +.. .++.+ +...... ...+.+
T Consensus 13 P~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~-~~~-~~i~~~~~~~~~~~-~~~~~i 89 (319)
T PRK00440 13 PRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGED-WRE-NFLELNASDERGID-VIRNKI 89 (319)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCc-ccc-ceEEeccccccchH-HHHHHH
Confidence 344566889999999999998877777789999999999999999999874322 211 22222 2222221 111111
Q ss_pred HhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccc-hh
Q 004895 234 SDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD-LL 310 (724)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~ 310 (724)
..+....+ .....+-++++|++.... ....+...+.. ....+.+|+++.... +.
T Consensus 90 ~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~--------~~~~~~lIl~~~~~~~l~ 146 (319)
T PRK00440 90 KEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEM--------YSQNTRFILSCNYSSKII 146 (319)
T ss_pred HHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhc--------CCCCCeEEEEeCCccccc
Confidence 11110000 001235689999986542 22223222222 233456776664332 21
Q ss_pred hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHH
Q 004895 311 CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 311 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 366 (724)
.........+++.++++++....+.+.+...... --++....+++.++|.+.-+.
T Consensus 147 ~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~-i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 147 DPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIE-ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred hhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHH
Confidence 1112234578999999999999998887533221 125678899999999886643
No 57
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=1.6e-06 Score=95.19 Aligned_cols=197 Identities=15% Similarity=0.157 Sum_probs=111.3
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|.+.....|..++..++.. .+.++|++|+||||+|+.+++.....+.+....|.|.+... +......-+.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCceE
Confidence 344567889999998898888766654 55899999999999999999987532222222232221100 0000000000
Q ss_pred hhCCCCCCCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEec-cc
Q 004895 235 DLGMNFDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSR-SR 307 (724)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR-~~ 307 (724)
.++.. ... ..+....+.+.+. .+++-++|+|+++... .++.+...+.. ....+.+|++|. ..
T Consensus 89 el~~~--~~~-~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe--------p~~~t~~Il~t~~~~ 157 (504)
T PRK14963 89 EIDAA--SNN-SVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE--------PPEHVIFILATTEPE 157 (504)
T ss_pred Eeccc--ccC-CHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh--------CCCCEEEEEEcCChh
Confidence 00000 000 1111222222221 2456799999997552 34444333322 223445555443 33
Q ss_pred chhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 308 DLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 308 ~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
.+..........+++.++++++..+.+.+.+....... -++....|++.++|.+--+
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i-~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA-EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 33222234456899999999999999998875332221 2467889999999988644
No 58
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.6e-06 Score=90.43 Aligned_cols=176 Identities=15% Similarity=0.228 Sum_probs=114.1
Q ss_pred ccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHh----hccCCCeEEEEEE-ecCCChHHHHHHHH
Q 004895 160 NIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVM----EDNVFDKVVMAEI-TKNPDAQKIQGELA 233 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~----~~~~F~~~~wv~v-s~~~~~~~l~~~i~ 233 (724)
..++|.+..++.+..++..++. ....++|+.|+||||+|+.+++..- ...|+|...|... +.....+++ +++.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~i-r~~~ 82 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDI-RNII 82 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHH-HHHH
Confidence 4567989999999999876654 4668999999999999999998752 2356676666542 233344442 3333
Q ss_pred HhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccc--cccccccccccCCCCcCCCCCCCCCcEEEEEecccchh-
Q 004895 234 SDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWT--KLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL- 310 (724)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~- 310 (724)
+.+.... ..+++-++|+|+++. ...++.+...+.. ...++.+|++|.+.+..
T Consensus 83 ~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEe--------pp~~t~~il~~~~~~~ll 137 (313)
T PRK05564 83 EEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEE--------PPKGVFIILLCENLEQIL 137 (313)
T ss_pred HHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcC--------CCCCeEEEEEeCChHhCc
Confidence 3332111 013456777777644 3456666545544 55678888888665432
Q ss_pred hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHH
Q 004895 311 CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 311 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 366 (724)
..-.+....+++.++++++....+.+..... -.+.++.++..++|.|.-+.
T Consensus 138 ~TI~SRc~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~~~~g~~~~a~ 188 (313)
T PRK05564 138 DTIKSRCQIYKLNRLSKEEIEKFISYKYNDI-----KEEEKKSAIAFSDGIPGKVE 188 (313)
T ss_pred HHHHhhceeeeCCCcCHHHHHHHHHHHhcCC-----CHHHHHHHHHHcCCCHHHHH
Confidence 2113345789999999999988887664311 13457789999999986554
No 59
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=8.5e-07 Score=97.25 Aligned_cols=182 Identities=15% Similarity=0.230 Sum_probs=111.9
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcc------------------------C
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDN------------------------V 210 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------------~ 210 (724)
+.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+.+...... .
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~ 91 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGR 91 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCC
Confidence 444677889999999999999876654 568899999999999999998764310 0
Q ss_pred CCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHH----hcCCcEEEEEccccccc--cccccccccC
Q 004895 211 FDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRL----KKEKRVLIILDNIWTKL--ELDKIGIPYG 284 (724)
Q Consensus 211 F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~ 284 (724)
|..+++++.+...++++ +..+.+.+ ..++.-++|+|+++... .++.+...+.
T Consensus 92 hpDviEIdAas~~gVDd----------------------IReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLE 149 (700)
T PRK12323 92 FVDYIEMDAASNRGVDE----------------------MAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLE 149 (700)
T ss_pred CCcceEecccccCCHHH----------------------HHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhc
Confidence 11122222222222221 22222222 13566799999997653 3444333222
Q ss_pred CCCcCCCCCCCCCcEEE-EEecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh
Q 004895 285 DVDEKDKNDDPRRCTII-LTSRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV 363 (724)
Q Consensus 285 ~~~~~~~~~~~~~s~il-vTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 363 (724)
. ....+++| +||....+...-.+....+.+..++.++..+.+.+.+....... -.+..+.|++.++|.|.
T Consensus 150 E--------PP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~-d~eAL~~IA~~A~Gs~R 220 (700)
T PRK12323 150 E--------PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAH-EVNALRLLAQAAQGSMR 220 (700)
T ss_pred c--------CCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHH
Confidence 2 23345544 45544444322233456899999999999999988775332221 14556889999999996
Q ss_pred HHHHH
Q 004895 364 ALSTV 368 (724)
Q Consensus 364 ai~~~ 368 (724)
-...+
T Consensus 221 dALsL 225 (700)
T PRK12323 221 DALSL 225 (700)
T ss_pred HHHHH
Confidence 54433
No 60
>PF13173 AAA_14: AAA domain
Probab=98.57 E-value=1.4e-07 Score=84.35 Aligned_cols=121 Identities=25% Similarity=0.220 Sum_probs=79.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKE 260 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 260 (724)
.+++.|.|+.|+||||++++++++.. ....++|++..+........ .+....+.+... +
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~-----------------~~~~~~~~~~~~-~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLAD-----------------PDLLEYFLELIK-P 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhh-----------------hhhHHHHHHhhc-c
Confidence 36899999999999999999998875 23457788766432211000 001122222222 3
Q ss_pred CcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccchhh-----hhcCCCceEecCCCCHHHH
Q 004895 261 KRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLLC-----IDMNSQKMFWIDALSEEEA 330 (724)
Q Consensus 261 kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~-----~~~~~~~~~~l~~L~~~e~ 330 (724)
++.+++||++....+|......+.+ ..+..+|++|+.+..... ...+....+++.||+..|.
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d--------~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVD--------NGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHH--------hccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 6789999999988888776555544 445688999999876541 1223345789999998773
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.57 E-value=4.2e-06 Score=79.71 Aligned_cols=187 Identities=18% Similarity=0.187 Sum_probs=94.8
Q ss_pred CcccccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALK-----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQG 230 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 230 (724)
|.....|+|.++.+..+.-.+. .+...-+.+||++|+||||||..+++..... | .+++.+.-....++ .
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~--~---~~~sg~~i~k~~dl-~ 93 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVN--F---KITSGPAIEKAGDL-A 93 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT----E---EEEECCC--SCHHH-H
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCC--e---EeccchhhhhHHHH-H
Confidence 5567889999998887654433 3456788999999999999999999988653 2 22322111111222 1
Q ss_pred HHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc---------cccccc--ccCCCCc-C-CCCCCCCC
Q 004895 231 ELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE---------LDKIGI--PYGDVDE-K-DKNDDPRR 297 (724)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~--~~~~~~~-~-~~~~~~~~ 297 (724)
. +...+ +++-+|++|++..... .++... ..+.-.. . ....-.+=
T Consensus 94 ~---------------------il~~l--~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 94 A---------------------ILTNL--KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp H---------------------HHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred H---------------------HHHhc--CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 1 12222 2345777788754311 111110 1110000 0 00000111
Q ss_pred cEEEEEecccchhhhhc-CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHh
Q 004895 298 CTIILTSRSRDLLCIDM-NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANAL 372 (724)
Q Consensus 298 s~ilvTtR~~~v~~~~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 372 (724)
+-|=.|||...+..... ...-..+++..+.+|-.++..+.+..-... --++.+.+|++.|.|-|--+.-+-...
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~-i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE-IDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E-E-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC-cCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 23667888766532212 222355899999999999998876422111 115789999999999997665544433
No 62
>PTZ00202 tuzin; Provisional
Probab=98.57 E-value=5.4e-06 Score=86.05 Aligned_cols=167 Identities=13% Similarity=0.176 Sum_probs=106.5
Q ss_pred cCCCcccccccchHHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHH
Q 004895 153 FGDMKDYNIFNSRKKIFQDVIEALKD---DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQ 229 (724)
Q Consensus 153 ~~~~~~~~~~~gR~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 229 (724)
.+.|.+...|+||+.++.+|...|.+ ...+++.|+|++|+|||||++.+..... ...++++.. +..+++
T Consensus 255 ~~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~-----~~qL~vNpr---g~eElL 326 (550)
T PTZ00202 255 QSAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG-----MPAVFVDVR---GTEDTL 326 (550)
T ss_pred cCCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC-----ceEEEECCC---CHHHHH
Confidence 34477788999999999999998853 2345899999999999999999996553 113333333 679999
Q ss_pred HHHHHhhCCCCCCCchhHHHHHHHHHHHh----c-CCcEEEEEccccccc---cccccccccCCCCcCCCCCCCCCcEEE
Q 004895 230 GELASDLGMNFDSNDLIYHRAKQLCQRLK----K-EKRVLIILDNIWTKL---ELDKIGIPYGDVDEKDKNDDPRRCTII 301 (724)
Q Consensus 230 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~-~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~~~~~~~s~il 301 (724)
+.|+.+||.+.... ..+....+.+.+. . +++.+||+-==+..+ .+++. ..+.. ...-|.|+
T Consensus 327 r~LL~ALGV~p~~~--k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~-v~la~--------drr~ch~v 395 (550)
T PTZ00202 327 RSVVKALGVPNVEA--CGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEV-VALAC--------DRRLCHVV 395 (550)
T ss_pred HHHHHHcCCCCccc--HHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHH-HHHHc--------cchhheee
Confidence 99999999743322 2334444444442 2 566677764321111 11111 12222 44557777
Q ss_pred EEecccchh--hhhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 302 LTSRSRDLL--CIDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 302 vTtR~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
+---.+..- ......-.-|-+++++.++|.++.++..
T Consensus 396 ~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h~~ 434 (550)
T PTZ00202 396 IEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQHAI 434 (550)
T ss_pred eeehHhhcchhcccCccceeEecCCCCHHHHHHHHhhcc
Confidence 655444321 1122334578899999999999887764
No 63
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.56 E-value=6.7e-08 Score=104.80 Aligned_cols=176 Identities=27% Similarity=0.341 Sum_probs=134.5
Q ss_pred cCceEEeccCCCcccCCCcccCC--CccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEE
Q 004895 527 KGPIAISLPYRDIQELPERLECP--QLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLC 604 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~--~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~ 604 (724)
..+..+.+.++.+..++...... +|+.|.+ ..+....++ .....++.|+.|++++|.+..+|...+.+.+|+.|+
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l--~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDL--SDNKIESLP-SPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccc--cccchhhhh-hhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 46788889889998888766554 8999988 334444443 236788999999999999999988877899999999
Q ss_pred cCCcccCCc-ccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccc
Q 004895 605 LDGWRLEDI-AIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWD 683 (724)
Q Consensus 605 L~~~~l~~~-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 683 (724)
+++|.+..+ ..+..+.+|++|.+++|.+...|..+.++.++..|.+.+ +.+... +..++.+++|+.|++++|..
T Consensus 193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~-~~~~~~l~~l~~L~~s~n~i--- 267 (394)
T COG4886 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDL-PESIGNLSNLETLDLSNNQI--- 267 (394)
T ss_pred ccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeec-cchhccccccceeccccccc---
Confidence 999998884 444677779999999997777788889999999998776 444443 34578899999999988642
Q ss_pred cccCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 684 KVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 684 ~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
. .+..+..+.+|+.|++++|.+...+.
T Consensus 268 --~-----~i~~~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 268 --S-----SISSLGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred --c-----ccccccccCccCEEeccCccccccch
Confidence 1 12237778899999999987765543
No 64
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.55 E-value=2.7e-07 Score=82.92 Aligned_cols=117 Identities=20% Similarity=0.298 Sum_probs=80.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcc---CCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDN---VFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQR 256 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 256 (724)
+.+++.|+|++|+|||++++.+.+...... .-..++|++++...+...+...|+++++...............+.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~ 82 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA 82 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH
Confidence 346889999999999999999999875310 12347799999888999999999999998776633355566777778
Q ss_pred HhcCCcEEEEEcccccc-c--cccccccccCCCCcCCCCCCCCCcEEEEEecc
Q 004895 257 LKKEKRVLIILDNIWTK-L--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRS 306 (724)
Q Consensus 257 l~~~kr~LlVlDdv~~~-~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 306 (724)
+.+.+..+||+||+... . .++.+.... +..+.++|+..+.
T Consensus 83 l~~~~~~~lviDe~~~l~~~~~l~~l~~l~----------~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 83 LDRRRVVLLVIDEADHLFSDEFLEFLRSLL----------NESNIKVVLVGTP 125 (131)
T ss_dssp HHHCTEEEEEEETTHHHHTHHHHHHHHHHT----------CSCBEEEEEEESS
T ss_pred HHhcCCeEEEEeChHhcCCHHHHHHHHHHH----------hCCCCeEEEEECh
Confidence 77666679999999765 2 122221111 3556677777665
No 65
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.54 E-value=4e-07 Score=93.25 Aligned_cols=291 Identities=23% Similarity=0.263 Sum_probs=181.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
..+.+.++|.|||||||++-.+.. ... .+-+.+.++.+....+...+.-.+...++....+.. .....+.....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~-~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g~---~~~~~~~~~~~- 86 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AAS-EYADGVAFVDLAPITDPALVFPTLAGALGLHVQPGD---SAVDTLVRRIG- 86 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-Hhh-hcccceeeeeccccCchhHhHHHHHhhcccccccch---HHHHHHHHHHh-
Confidence 356899999999999999999998 433 233567778887777777777777777877654422 12334444444
Q ss_pred CCcEEEEEcccccccc-ccccccccCCCCcCCCCCCCCCcEEEEEecccchhhhhcCCCceEecCCCCHH-HHHHHHHHH
Q 004895 260 EKRVLIILDNIWTKLE-LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCIDMNSQKMFWIDALSEE-EALQLFEKI 337 (724)
Q Consensus 260 ~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~~~~l~~L~~~-e~~~Lf~~~ 337 (724)
++|.++|+||.....+ -..+...+.. +...-.|+.|+|.... ......+.+++|+.. ++.++|...
T Consensus 87 ~rr~llvldncehl~~~~a~~i~all~--------~~~~~~~~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~r 154 (414)
T COG3903 87 DRRALLVLDNCEHLLDACAALIVALLG--------ACPRLAILATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCR 154 (414)
T ss_pred hhhHHHHhcCcHHHHHHHHHHHHHHHc--------cchhhhhHHHhHhhhc----ccccccccCCccccCCchhHHHHHH
Confidence 5889999999876532 1111111211 4455678899998754 344567778888755 788998887
Q ss_pred hCCCCC----CCCchhHHHHHHHHhCCchhHHHHHHHHhcCCCHHHHHHHHHH----HhcCccccccCCCcccchhhHhh
Q 004895 338 VGESTK----ASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIWKDALNK----LTSSNLREIHGMDADVYSPIKLS 409 (724)
Q Consensus 338 ~~~~~~----~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~----l~~~~~~~~~~~~~~i~~~l~~s 409 (724)
+..... ...-.....+|.++..|.|++|...++..+.....+...-++. +... ..............+.+|
T Consensus 155 a~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 155 AVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhh
Confidence 642111 1222567889999999999999999999987766555444432 1111 111111234568899999
Q ss_pred hhhcHHHHHHHHHhhccCCCCCcccHHHHHHHHhhcccccccccccccccHHHHHHHHHHHHHHHHhhcccccC--CCCC
Q 004895 410 YDFLDDEAKSLFLLCGLHREGRPIHVHYLLRYVMGLRYDKGLGLFRNVYTLEAARNRVDALIDNLKASCLLLDG--DAED 487 (724)
Q Consensus 410 y~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~--~~~~ 487 (724)
|.-|..-.+-.|.-++.|...+. .+ ...|. +-|-. .+...-.....+..+++.++..-. ....
T Consensus 234 ~~lLtgwe~~~~~rLa~~~g~f~--~~--l~~~~------a~g~~-----~~~~~y~~~~a~~ll~~kslv~a~~~~~~a 298 (414)
T COG3903 234 YALLTGWERALFGRLAVFVGGFD--LG--LALAV------AAGAD-----VDVPRYLVLLALTLLVDKSLVVALDLLGRA 298 (414)
T ss_pred hHhhhhHHHHHhcchhhhhhhhc--cc--HHHHH------hcCCc-----cccchHHHHHHHHHHhhccchhhhhhhhHH
Confidence 99999999999999999987533 33 23444 33211 101111122334446666665322 1223
Q ss_pred cchhhHHHHHHHHHHhh
Q 004895 488 EAKLHDVIHVVAASIAE 504 (724)
Q Consensus 488 ~~~mHdlv~d~a~~~~~ 504 (724)
.|+.-+-+|.|+..+-.
T Consensus 299 ~~Rl~eT~r~YalaeL~ 315 (414)
T COG3903 299 RYRLLETGRRYALAELH 315 (414)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46666666666665543
No 66
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=3.1e-06 Score=93.02 Aligned_cols=188 Identities=14% Similarity=0.191 Sum_probs=111.8
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcc-------------------CCCeEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDN-------------------VFDKVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 215 (724)
|.....++|.+..+..|...+..++. ..+.++|+.|+||||+|+.+++...... .|..++
T Consensus 12 P~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 12 PQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred cCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34456788999999999988876555 4578999999999999999998664211 122233
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 293 (724)
++.......++++ +++++ .+...-..+++-++|+|++.... ..+.+...+..
T Consensus 92 eidaas~~gvd~i-r~ii~-----------------~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-------- 145 (546)
T PRK14957 92 EIDAASRTGVEET-KEILD-----------------NIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-------- 145 (546)
T ss_pred EeecccccCHHHH-HHHHH-----------------HHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc--------
Confidence 3333222222221 12221 11111112566799999997543 33444333322
Q ss_pred CCCCcEEE-EEecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh-HHHHHHH
Q 004895 294 DPRRCTII-LTSRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV-ALSTVAN 370 (724)
Q Consensus 294 ~~~~s~il-vTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~ 370 (724)
....+.+| +||....+...-......+++.+++.++....+.+.+..... ..-++....|++.++|.+- |+..+-.
T Consensus 146 pp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 146 PPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-NSDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred CCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 23345455 555443333222344578999999999998888886643221 1124567889999999764 5444433
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.51 E-value=2.9e-06 Score=92.70 Aligned_cols=179 Identities=16% Similarity=0.221 Sum_probs=110.2
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCCC----------------------
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFD---------------------- 212 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---------------------- 212 (724)
|.....++|.+..+..|...+..++. ..+.++|+.|+||||+|+.+++..-......
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h 96 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNH 96 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCC
Confidence 44466788999999988887766554 5788999999999999999999764321110
Q ss_pred -eEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCC
Q 004895 213 -KVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGD 285 (724)
Q Consensus 213 -~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~ 285 (724)
.++.++.+....+.+ ...+.+... .+++-++|+|+++... .++.+...+..
T Consensus 97 ~Dv~eidaas~~~vd~----------------------Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe 154 (507)
T PRK06645 97 PDIIEIDAASKTSVDD----------------------IRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE 154 (507)
T ss_pred CcEEEeeccCCCCHHH----------------------HHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh
Confidence 011122211112211 122222211 2466799999998753 35554333332
Q ss_pred CCcCCCCCCCCCcEEE-EEecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhH
Q 004895 286 VDEKDKNDDPRRCTII-LTSRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVA 364 (724)
Q Consensus 286 ~~~~~~~~~~~~s~il-vTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 364 (724)
....+.+| +||+...+...-......+++.+++.++....+.+.+......- -.+....|++.++|.+.-
T Consensus 155 --------pp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~i-e~eAL~~Ia~~s~GslR~ 225 (507)
T PRK06645 155 --------PPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKT-DIEALRIIAYKSEGSARD 225 (507)
T ss_pred --------cCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHH
Confidence 33445555 45444444322233456899999999999999998886433221 145678899999998754
Q ss_pred H
Q 004895 365 L 365 (724)
Q Consensus 365 i 365 (724)
+
T Consensus 226 a 226 (507)
T PRK06645 226 A 226 (507)
T ss_pred H
Confidence 4
No 68
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.50 E-value=8.7e-07 Score=88.29 Aligned_cols=177 Identities=12% Similarity=0.223 Sum_probs=108.1
Q ss_pred cccccccchHHHHHH---HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHH
Q 004895 157 KDYNIFNSRKKIFQD---VIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELA 233 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~---l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 233 (724)
.....++|.++.+.+ |.+.+.++.++-+.+||++|+||||||+.+....+... ..||..|....-..-.+.|.
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~if 210 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIF 210 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHH
Confidence 334455565544332 33444578889999999999999999999998776432 56888876654444445554
Q ss_pred HhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEE--Eecccch
Q 004895 234 SDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIIL--TSRSRDL 309 (724)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v 309 (724)
++- .. ...+ .++|.+|++|.|..-. +-+.+ +|. -.+|.-++| ||-++..
T Consensus 211 e~a--------------q~-~~~l-~krkTilFiDEiHRFNksQQD~f---LP~--------VE~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 211 EQA--------------QN-EKSL-TKRKTILFIDEIHRFNKSQQDTF---LPH--------VENGDITLIGATTENPSF 263 (554)
T ss_pred HHH--------------HH-HHhh-hcceeEEEeHHhhhhhhhhhhcc---cce--------eccCceEEEecccCCCcc
Confidence 432 11 1122 3588999999997553 22222 333 445665554 6666543
Q ss_pred h--hhhcCCCceEecCCCCHHHHHHHHHHHhC---CC------CCCCC--c-hhHHHHHHHHhCCchhH
Q 004895 310 L--CIDMNSQKMFWIDALSEEEALQLFEKIVG---ES------TKASD--F-RPLAEEIVGKCGGLPVA 364 (724)
Q Consensus 310 ~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~---~~------~~~~~--l-~~~~~~I~~~c~GlPLa 364 (724)
- ........++.|++|+.++...++.+... +. .+++. + ..+.+-++..|.|-..+
T Consensus 264 qln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 264 QLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred chhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 1 12244557899999999999999988542 11 11111 1 23556667777776643
No 69
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.49 E-value=3.2e-07 Score=91.00 Aligned_cols=94 Identities=17% Similarity=0.152 Sum_probs=64.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC--CChHHHHHHHH-----HhhCCCCCCCch-hHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN--PDAQKIQGELA-----SDLGMNFDSNDL-IYHRA 250 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~i~-----~~l~~~~~~~~~-~~~~~ 250 (724)
..-..++|+|++|+|||||++.+++..... +|+.+.|+.+.++ .++.++++.+. ..++.+...... .....
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~ 92 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVL 92 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999998764 8999999998877 78899999883 333321100000 00111
Q ss_pred HHHHHHHhcCCcEEEEEcccccc
Q 004895 251 KQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 251 ~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
.........+++.++++|++...
T Consensus 93 ~~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 93 EKAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHHCCCCEEEEEECHHHh
Confidence 22222223478999999999654
No 70
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.49 E-value=2.2e-06 Score=91.66 Aligned_cols=194 Identities=15% Similarity=0.120 Sum_probs=112.1
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|.+..+..|..++..++.. .+.++|+.|+||||+|+.+++.......... ..+..... ...+..
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s----C~~i~~ 86 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS----CLEITK 86 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH----HHHHHc
Confidence 445677889999999999888877754 5789999999999999999987643211100 00111101 112222
Q ss_pred hhCCCC---CC-CchhHHHHHHHHHHH----hcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEE-EE
Q 004895 235 DLGMNF---DS-NDLIYHRAKQLCQRL----KKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTII-LT 303 (724)
Q Consensus 235 ~l~~~~---~~-~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il-vT 303 (724)
...... +. .....+.+..+.+.+ ..++.-++|+|++.... .++.+...+.. ......+| .|
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE--------Pp~~viFILaT 158 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE--------PPAHIVFILAT 158 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc--------CCCceEEEeec
Confidence 111110 00 000111222222222 23566799999997653 34544333322 22344444 45
Q ss_pred ecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 304 SRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 304 tR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
|....+...-......|.+.+++.++..+.+.+.+...... --++....|++.++|.+.-+
T Consensus 159 te~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~-~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 159 TEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ-YDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred CChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCChHHHH
Confidence 54444432223445689999999999999998887533221 12567889999999998543
No 71
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=3.5e-06 Score=91.67 Aligned_cols=190 Identities=17% Similarity=0.233 Sum_probs=110.2
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccC-------------------CCeEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNV-------------------FDKVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 215 (724)
|.....++|.+.....|...+..++. +.+.++|++|+||||+|+.+++....... +..++
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 44567789999888888888776666 45789999999999999999987643111 00122
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 293 (724)
.++.+...+..++ +.|.+... ..-..+++-++|+|++.... ..+.+...+..
T Consensus 90 el~aa~~~gid~i-R~i~~~~~-----------------~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-------- 143 (472)
T PRK14962 90 ELDAASNRGIDEI-RKIRDAVG-----------------YRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-------- 143 (472)
T ss_pred EEeCcccCCHHHH-HHHHHHHh-----------------hChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh--------
Confidence 2332222222222 12222111 00012456799999996542 23333222221
Q ss_pred CCCCcEEEEEecc-cchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCc-hhHHHHHHHH
Q 004895 294 DPRRCTIILTSRS-RDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGL-PVALSTVANA 371 (724)
Q Consensus 294 ~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~~~ 371 (724)
....+.+|++|.+ ..+...-......+++.+++.++....+.+.+..... .--++....|++.++|. +.++..+-.+
T Consensus 144 p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 144 PPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred CCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 2223444444433 3332222344568999999999999999887743221 11246778899888654 6666666554
Q ss_pred h
Q 004895 372 L 372 (724)
Q Consensus 372 l 372 (724)
.
T Consensus 223 ~ 223 (472)
T PRK14962 223 W 223 (472)
T ss_pred H
Confidence 3
No 72
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=1e-05 Score=84.77 Aligned_cols=199 Identities=14% Similarity=0.174 Sum_probs=115.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccC--CCeEEEEEEecCCChHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNV--FDKVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~~~~~l~~~i 232 (724)
|.....++|.++....+...+..++. ..+.|+|+.|+||||+|..+++..-.... +... .....+..-...+.|
T Consensus 19 P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c~~i 95 (351)
T PRK09112 19 PSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVWRQI 95 (351)
T ss_pred CCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHHHHH
Confidence 55567788999999999999886664 45889999999999999999998743110 1111 001111111233333
Q ss_pred HHh-------hCCCCCC------CchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCC
Q 004895 233 ASD-------LGMNFDS------NDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 233 ~~~-------l~~~~~~------~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 293 (724)
... +..+.+. .....+.+..+.+.+. .+++-++|+|++.... ..+.+...+..
T Consensus 96 ~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE-------- 167 (351)
T PRK09112 96 AQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE-------- 167 (351)
T ss_pred HcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc--------
Confidence 222 1111000 0111233344554443 3567799999997653 22333222221
Q ss_pred CCCCcE-EEEEecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 294 DPRRCT-IILTSRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 294 ~~~~s~-ilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
....+. |++|++...+...-.+....+++.+++.++..+++.+...... --++....|++.++|.|.....+
T Consensus 168 pp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 168 PPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred CCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222334 4555444433322233456999999999999999988432211 11456788999999999866543
No 73
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.45 E-value=1.6e-06 Score=79.44 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=46.7
Q ss_pred cchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 163 NSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 163 ~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
.|++..+..+...+.....+.+.|+|++|+|||++++.+++..... -..++++..++...
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~ 60 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLE 60 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhh
Confidence 3788889999888876667789999999999999999999987522 23466777655433
No 74
>PLN03150 hypothetical protein; Provisional
Probab=98.45 E-value=4.5e-07 Score=103.20 Aligned_cols=102 Identities=23% Similarity=0.369 Sum_probs=78.1
Q ss_pred CceEEEcCCCcCC-CCCccccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCc-ccchhhhcCCCCCeEccC
Q 004895 576 ELKVLDFTGIRFS-PLPSSLGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIK-QLPLQIGQLTRLQLLDLS 651 (724)
Q Consensus 576 ~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~ 651 (724)
.+..|+|++|.+. .+|..++++.+|++|+|++|.+.. |..++.+++|++|+|++|.++ .+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3777888888887 678888888888888888888875 567888888888888888887 678888888888888888
Q ss_pred CCCCCcccChHHhhC-CCCCcEEEccCC
Q 004895 652 NCSSLVVIAPNVISK-LSRLEELYMGDS 678 (724)
Q Consensus 652 ~~~~l~~~~~~~i~~-l~~L~~L~l~~~ 678 (724)
+|.....+|. .++. +.++..+++.+|
T Consensus 499 ~N~l~g~iP~-~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSLSGRVPA-ALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcccccCCh-HHhhccccCceEEecCC
Confidence 8543334443 3554 346677777765
No 75
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.44 E-value=5.1e-06 Score=93.88 Aligned_cols=205 Identities=14% Similarity=0.106 Sum_probs=113.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCC---eEEEEEEecC---CChHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFD---KVVMAEITKN---PDAQKIQG 230 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~vs~~---~~~~~l~~ 230 (724)
.....++|++..+..+.+.+.......+.|+|++|+||||+|+.+++.......+. ..-|+.+... .+...+..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~ 230 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTN 230 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhH
Confidence 34456789999888888877666667899999999999999999988775433331 2345544321 12222211
Q ss_pred HH---------------HHhhCCCC----------------C-CCchhHHHHHHHHHHHhcCCcEEEEEcccccc--ccc
Q 004895 231 EL---------------ASDLGMNF----------------D-SNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK--LEL 276 (724)
Q Consensus 231 ~i---------------~~~l~~~~----------------~-~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~ 276 (724)
.+ +...+... + ...........+...+. ++++.++-|+.|.. ..|
T Consensus 231 ~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le-~~~v~~~~~~~~~~~~~~~ 309 (615)
T TIGR02903 231 PLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLE-DKRVEFSSSYYDPDDPNVP 309 (615)
T ss_pred HhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHh-hCeEEeecceeccCCcccc
Confidence 11 11111100 0 01112233455555655 46677776666544 235
Q ss_pred cccccccCCCCcCCCCCCCCCcEEEE--Eecccchh-hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHH
Q 004895 277 DKIGIPYGDVDEKDKNDDPRRCTIIL--TSRSRDLL-CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEE 353 (724)
Q Consensus 277 ~~l~~~~~~~~~~~~~~~~~~s~ilv--TtR~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~ 353 (724)
+.+...+.. ..+...|++ ||++.... .........+.+.+++.+|.+.++.+.+...... --+++.+.
T Consensus 310 ~~ik~~~~~--------~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~-ls~eal~~ 380 (615)
T TIGR02903 310 KYIKKLFEE--------GAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVH-LAAGVEEL 380 (615)
T ss_pred hhhhhhccc--------CccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence 555444332 333334444 56644321 1112233577899999999999999987532111 11345555
Q ss_pred HHHHhCCchhHHHHHHHH
Q 004895 354 IVGKCGGLPVALSTVANA 371 (724)
Q Consensus 354 I~~~c~GlPLai~~~~~~ 371 (724)
|.+.+..-+-|+..++..
T Consensus 381 L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 381 IARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHCCCcHHHHHHHHHHH
Confidence 555555445666555444
No 76
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=4.9e-06 Score=92.94 Aligned_cols=197 Identities=14% Similarity=0.172 Sum_probs=110.8
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|.+..+..|...+..++.. .+.++|+.|+||||+|+.+++..-....+.. ..+..-...+.|..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~-------~pCg~C~~C~~i~~ 84 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA-------TPCGECDNCREIEQ 84 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC-------CCCCCCHHHHHHHc
Confidence 445677889999999999888876654 4579999999999999999987643211100 00111111111111
Q ss_pred hhCCC---CCCC-chhHHHHHHHHHHH----hcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEE-E
Q 004895 235 DLGMN---FDSN-DLIYHRAKQLCQRL----KKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIIL-T 303 (724)
Q Consensus 235 ~l~~~---~~~~-~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv-T 303 (724)
.-..+ .+.. ....+....+.+.+ ..+++-++|+|++.... ..+.+...+.. ....+++|+ |
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE--------Pp~~v~FIL~T 156 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--------PPEHVKFLLAT 156 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc--------CCCCeEEEEec
Confidence 00000 0000 00111122222222 23567799999997653 33333222222 223444444 4
Q ss_pred ecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 304 SRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 304 tR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
|....+...-.+....+++.+++.++....+.+.+...... .-.+....|++.++|.+.-+..+
T Consensus 157 t~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~-~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 157 TDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP-FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 44444432223345789999999999999998876422211 12456778999999988644433
No 77
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.42 E-value=4.9e-06 Score=92.51 Aligned_cols=185 Identities=14% Similarity=0.211 Sum_probs=109.2
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccC-------------------CCeEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNV-------------------FDKVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 215 (724)
|.....++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+++....... |-.++
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~Dvl 91 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLL 91 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceE
Confidence 44567889999999999999886665 46789999999999999999887532211 11112
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccCCCCcCCCCC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--LDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~ 293 (724)
.++.+....+++ ++++++.. ...-..+++-++|+|++..... .+.+...+..
T Consensus 92 EidaAs~~gVd~-IRelle~a-----------------~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-------- 145 (709)
T PRK08691 92 EIDAASNTGIDN-IREVLENA-----------------QYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-------- 145 (709)
T ss_pred EEeccccCCHHH-HHHHHHHH-----------------HhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh--------
Confidence 222222222211 11111111 0000124567999999975432 2222222221
Q ss_pred CCCCcEEEEEeccc-chhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHH
Q 004895 294 DPRRCTIILTSRSR-DLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALST 367 (724)
Q Consensus 294 ~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 367 (724)
....+++|++|.+. .+.....+....+.+.+++.++....+.+.+......- -.+....|++.++|.+.-+..
T Consensus 146 Pp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i-d~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 146 PPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAY-EPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred CCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc-CHHHHHHHHHHhCCCHHHHHH
Confidence 22345666666443 33211123345788999999999999998875332221 245778999999999854433
No 78
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.40 E-value=1.2e-06 Score=84.07 Aligned_cols=74 Identities=18% Similarity=0.292 Sum_probs=43.5
Q ss_pred cccchHHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-----ChHHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALK---DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-----DAQKIQGEL 232 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-----~~~~l~~~i 232 (724)
.|+||+++++++...+. ....+.+.|+|++|+|||+|++.++........+ ++.+.+.... ....+++++
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 78 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGY--VISINCDDSERNPYSPFRSALRQL 78 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT----EEEEEEETTTS-HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCE--EEEEEEeccccchhhHHHHHHHHH
Confidence 37899999999999983 4567899999999999999999999998775222 3444444331 124455555
Q ss_pred HHhh
Q 004895 233 ASDL 236 (724)
Q Consensus 233 ~~~l 236 (724)
+.++
T Consensus 79 ~~~~ 82 (185)
T PF13191_consen 79 IDQL 82 (185)
T ss_dssp S---
T ss_pred HHHh
Confidence 5443
No 79
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.39 E-value=7.7e-06 Score=86.89 Aligned_cols=172 Identities=11% Similarity=0.106 Sum_probs=103.7
Q ss_pred cccccchHHHHHHHHHHhcCCC----------ccEEEEEcCCCCcHHHHHHHHHHHHhhcc-------------------
Q 004895 159 YNIFNSRKKIFQDVIEALKDDK----------LNIIGVCGMGGVGKTTLVKQIAKQVMEDN------------------- 209 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~~~~----------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------------- 209 (724)
...++|.+..++.|..++..+. ...+.++|+.|+|||++|+.+++..-...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 3567899999999988887543 45688999999999999999988653211
Q ss_pred CCCeEEEEEEe-cCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccc
Q 004895 210 VFDKVVMAEIT-KNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIP 282 (724)
Q Consensus 210 ~F~~~~wv~vs-~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~ 282 (724)
|.| +.++... ....++ .+..+.+... .+++-++|+|+++... ..+.+...
T Consensus 84 hpD-~~~i~~~~~~i~i~----------------------~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~ 140 (394)
T PRK07940 84 HPD-VRVVAPEGLSIGVD----------------------EVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKA 140 (394)
T ss_pred CCC-EEEeccccccCCHH----------------------HHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHH
Confidence 112 1122111 111111 1222322221 2455688999997653 22333222
Q ss_pred cCCCCcCCCCCCCCCcEEEEEeccc-chhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCc
Q 004895 283 YGDVDEKDKNDDPRRCTIILTSRSR-DLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGL 361 (724)
Q Consensus 283 ~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 361 (724)
+.. ...++.+|++|.+. .+...-.+....+.+.+++.++..+.+.+..+. + .+.+..++..++|.
T Consensus 141 LEe--------p~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~~---~---~~~a~~la~~s~G~ 206 (394)
T PRK07940 141 VEE--------PPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDGV---D---PETARRAARASQGH 206 (394)
T ss_pred hhc--------CCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhcCC---C---HHHHHHHHHHcCCC
Confidence 222 23445555555554 333222344578999999999999888754321 1 35678899999999
Q ss_pred hhHHHH
Q 004895 362 PVALST 367 (724)
Q Consensus 362 PLai~~ 367 (724)
|.....
T Consensus 207 ~~~A~~ 212 (394)
T PRK07940 207 IGRARR 212 (394)
T ss_pred HHHHHH
Confidence 975543
No 80
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.39 E-value=1.3e-06 Score=90.17 Aligned_cols=101 Identities=19% Similarity=0.228 Sum_probs=67.2
Q ss_pred HHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC--ChHHHHHHHHHhhCC-CCCCCchhH
Q 004895 172 VIEALK-DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP--DAQKIQGELASDLGM-NFDSNDLIY 247 (724)
Q Consensus 172 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~~~l~~-~~~~~~~~~ 247 (724)
+++.+. -+.-+...|+|++|+||||||+.+|+....+ +|+.++||.+.+.. .+.++++.|...+-. ..+.+....
T Consensus 159 vID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~ 237 (416)
T PRK09376 159 IIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERH 237 (416)
T ss_pred eeeeecccccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHH
Confidence 444443 2345678999999999999999999998875 89999999999987 677777777632211 122222111
Q ss_pred ----HHHHHHHHHH-hcCCcEEEEEcccccc
Q 004895 248 ----HRAKQLCQRL-KKEKRVLIILDNIWTK 273 (724)
Q Consensus 248 ----~~~~~l~~~l-~~~kr~LlVlDdv~~~ 273 (724)
..+....+.+ ..+++++|++|++...
T Consensus 238 ~~~a~~~ie~Ae~~~e~G~dVlL~iDsItR~ 268 (416)
T PRK09376 238 VQVAEMVIEKAKRLVEHGKDVVILLDSITRL 268 (416)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEChHHH
Confidence 1111122222 3578999999999654
No 81
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.38 E-value=9.7e-06 Score=87.89 Aligned_cols=183 Identities=13% Similarity=0.132 Sum_probs=113.2
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhc-------------------cCCCeEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMED-------------------NVFDKVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~ 215 (724)
|.....++|.+...+.|...+..++.. .+.++|+.|+||||+|+.+++..-.. ..+.-++
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~ 88 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVI 88 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEE
Confidence 344677889999999888888766665 78899999999999999998754211 1112234
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 293 (724)
.++.+...+++++ +++++..... -..+++-++|+|++.... ..+.+...+..
T Consensus 89 eidaas~~~vddI-R~Iie~~~~~-----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-------- 142 (491)
T PRK14964 89 EIDAASNTSVDDI-KVILENSCYL-----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEE-------- 142 (491)
T ss_pred EEecccCCCHHHH-HHHHHHHHhc-----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhC--------
Confidence 4554444444432 2333222100 011456789999996543 23333222322
Q ss_pred CCCCcEEEEEec-ccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 294 DPRRCTIILTSR-SRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 294 ~~~~s~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
....+++|++|. ...+...-......+++.+++.++..+.+.+.+......- -++....|++.++|.+..+
T Consensus 143 Pp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i-~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 143 PAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEH-DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred CCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 234555555553 3344322234457899999999999999998875432221 1456788999999988644
No 82
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.36 E-value=1.8e-05 Score=83.49 Aligned_cols=200 Identities=11% Similarity=0.111 Sum_probs=113.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEE---EEEecCCChHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVM---AEITKNPDAQKIQGE 231 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w---v~vs~~~~~~~l~~~ 231 (724)
|.....++|.++..+.|.+.+..++.+ .+.++|+.|+||+|+|..+++..-.......... ...-..+..-...+.
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~ 94 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARR 94 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHH
Confidence 445567889999999999998876654 5889999999999999999998743221110000 000000000011111
Q ss_pred HHHhhCCC-------CCC------CchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCC
Q 004895 232 LASDLGMN-------FDS------NDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKN 292 (724)
Q Consensus 232 i~~~l~~~-------~~~------~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 292 (724)
|...-..+ .++ .....+.+..+.+.+. .+.+.++|+||++..+ ..+.+...+..
T Consensus 95 i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe------- 167 (365)
T PRK07471 95 IAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE------- 167 (365)
T ss_pred HHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc-------
Confidence 11110000 000 0011223444444442 2567899999997553 23333222222
Q ss_pred CCCCCcEEEEEecccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 293 DDPRRCTIILTSRSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 293 ~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
...++.+|++|.+.. +...-.+....+.+.+++.++..+++.+..... + .+....+++.++|.|+.+..+
T Consensus 168 -pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~---~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 168 -PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL---P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred -CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC---C--HHHHHHHHHHcCCCHHHHHHH
Confidence 234555666666553 333334456789999999999999998864221 1 122367899999999865443
No 83
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.36 E-value=3.6e-07 Score=99.12 Aligned_cols=157 Identities=29% Similarity=0.367 Sum_probs=102.4
Q ss_pred cCCCccEEEEecccccccccchhhhcCCC-CceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCc-ccccCCCCCcE
Q 004895 547 ECPQLKLFLLFAKYDSTLQISDHFFEGTE-ELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDI-AIVGQLKKLEI 624 (724)
Q Consensus 547 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~-~~~~~l~~L~~ 624 (724)
..+++..|.+ ..+....+++. ...+. +|+.|++++|.+..+|..++.+++|+.|+++.|.+... ...+.+.+|+.
T Consensus 114 ~~~~l~~L~l--~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDL--DNNNITDIPPL-IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEec--CCcccccCccc-cccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 3455666666 33334444432 22332 67777777777777777777777777777777777774 34447777777
Q ss_pred EEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcE
Q 004895 625 LSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTT 704 (724)
Q Consensus 625 L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 704 (724)
|++++|.+..+|..+..+..|..|.++++.. ...+. .+.+++++..|.+.+|.. ...+..+..+++|+.
T Consensus 191 L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~-~~~~~-~~~~~~~l~~l~l~~n~~---------~~~~~~~~~l~~l~~ 259 (394)
T COG4886 191 LDLSGNKISDLPPEIELLSALEELDLSNNSI-IELLS-SLSNLKNLSGLELSNNKL---------EDLPESIGNLSNLET 259 (394)
T ss_pred eeccCCccccCchhhhhhhhhhhhhhcCCcc-eecch-hhhhcccccccccCCcee---------eeccchhccccccce
Confidence 7777777777777766667777777777322 23322 356777777776555321 111345667788999
Q ss_pred EEeeccccccccc
Q 004895 705 LEIDVRDAEMLRR 717 (724)
Q Consensus 705 L~l~~n~~~~lp~ 717 (724)
|+++.|.++.++.
T Consensus 260 L~~s~n~i~~i~~ 272 (394)
T COG4886 260 LDLSNNQISSISS 272 (394)
T ss_pred ecccccccccccc
Confidence 9999999888875
No 84
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.36 E-value=4.9e-06 Score=94.89 Aligned_cols=175 Identities=18% Similarity=0.252 Sum_probs=101.0
Q ss_pred CcccccccchHHHHH---HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQ---DVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~---~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 232 (724)
|.....|+|++..+. .+...+..+....+.++|++|+||||+|+.+++.... +|. .++.+. ....++ ++
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~--~f~---~lna~~-~~i~di-r~- 95 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRA--HFS---SLNAVL-AGVKDL-RA- 95 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcC--cce---eehhhh-hhhHHH-HH-
Confidence 445667889988774 4556666677778899999999999999999987642 231 111110 011111 11
Q ss_pred HHhhCCCCCCCchhHHHHHHHHHHHh-cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEE--eccc
Q 004895 233 ASDLGMNFDSNDLIYHRAKQLCQRLK-KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILT--SRSR 307 (724)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvT--tR~~ 307 (724)
........+. .+++.+|||||++... .++.+... ...+..++++ |.+.
T Consensus 96 ----------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~-----------lE~g~IiLI~aTTenp 148 (725)
T PRK13341 96 ----------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPW-----------VENGTITLIGATTENP 148 (725)
T ss_pred ----------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHH-----------hcCceEEEEEecCCCh
Confidence 1111111111 1456899999997543 33333221 2234555554 3332
Q ss_pred c--hhhhhcCCCceEecCCCCHHHHHHHHHHHhCC------CCCCCCchhHHHHHHHHhCCchhHH
Q 004895 308 D--LLCIDMNSQKMFWIDALSEEEALQLFEKIVGE------STKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 308 ~--v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~------~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
. +..........+.+++++.++...++.+.+.. .....--++....|++.+.|..-.+
T Consensus 149 ~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 149 YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSL 214 (725)
T ss_pred HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHH
Confidence 1 11111223457999999999999999987641 1111112456788888898875433
No 85
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.35 E-value=2.1e-05 Score=78.56 Aligned_cols=192 Identities=17% Similarity=0.213 Sum_probs=119.9
Q ss_pred HHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCC----eEEEEEEecCCChHHHHHHHHHhhCCC
Q 004895 167 KIFQDVIEALK---DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFD----KVVMAEITKNPDAQKIQGELASDLGMN 239 (724)
Q Consensus 167 ~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~l~~~i~~~l~~~ 239 (724)
+.++.+.+.+. ..+.+-+.|||.+|.|||++++++.........-+ .++.|.....++...+...|+.+++.+
T Consensus 44 ~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 44 EALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred HHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 34555555554 34567899999999999999999998764321111 377888888999999999999999998
Q ss_pred CCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc---------ccccccccCCCCcCCCCCCCCCcEEEEEecccchh
Q 004895 240 FDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE---------LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL 310 (724)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 310 (724)
............+....++.-+--+||+|++.+... ++.++ .+.. .-.=+-|.+-|+...-+
T Consensus 124 ~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK-~L~N--------eL~ipiV~vGt~~A~~a 194 (302)
T PF05621_consen 124 YRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALK-FLGN--------ELQIPIVGVGTREAYRA 194 (302)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHH-HHhh--------ccCCCeEEeccHHHHHH
Confidence 766553444444445555544567999999976421 11111 1111 22234466777654432
Q ss_pred h----hhcCCCceEecCCCCHH-HHHHHHHHHhC----CCCCCCCchhHHHHHHHHhCCchhHHHH
Q 004895 311 C----IDMNSQKMFWIDALSEE-EALQLFEKIVG----ESTKASDFRPLAEEIVGKCGGLPVALST 367 (724)
Q Consensus 311 ~----~~~~~~~~~~l~~L~~~-e~~~Lf~~~~~----~~~~~~~l~~~~~~I~~~c~GlPLai~~ 367 (724)
- .-.+....+.++....+ |...|+..... .....-...++++.|...++|+.--+..
T Consensus 195 l~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 195 LRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred hccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 1 11123456777776544 44555544332 1222223467899999999998755443
No 86
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.35 E-value=9.2e-06 Score=89.42 Aligned_cols=199 Identities=14% Similarity=0.183 Sum_probs=108.9
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|++..++.+..++..++. +.+.++|+.|+||||+|+.+++...... |... ..++.-...+.+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~------~~~~-~~Cg~C~sCr~i~~ 84 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLN------PKDG-DCCNSCSVCESINT 84 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCC------CCCC-CCCcccHHHHHHHc
Confidence 44566788999999999998876554 4688999999999999999998864321 1110 01111111111111
Q ss_pred hhCCC---CCCC-chhHHHHHHHHHHHh----cCCcEEEEEcccccc--ccccccccccCCCCcCCCCCCCCCcEEEEEe
Q 004895 235 DLGMN---FDSN-DLIYHRAKQLCQRLK----KEKRVLIILDNIWTK--LELDKIGIPYGDVDEKDKNDDPRRCTIILTS 304 (724)
Q Consensus 235 ~l~~~---~~~~-~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 304 (724)
..... .+.. ....+....+..... .+++-++|+|++... ..++.+...+.. ....+.+|++|
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE--------Pp~~tvfIL~T 156 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE--------PPKHVVFIFAT 156 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh--------CCCcEEEEEEC
Confidence 11000 0000 000111122222111 124457999999764 233443322222 22344454444
Q ss_pred -cccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh-HHHHHHH
Q 004895 305 -RSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV-ALSTVAN 370 (724)
Q Consensus 305 -R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~~~ 370 (724)
....+...-......+++.++++++....+.+.+......- -.+.+..+++.++|.+. |+..+-.
T Consensus 157 t~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~I-s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 157 TEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKI-EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred CChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 43333222233456899999999999999988764322111 14567889999999765 4444443
No 87
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=9e-06 Score=90.64 Aligned_cols=199 Identities=12% Similarity=0.173 Sum_probs=110.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCC--CeEEEEEEecCCChHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVF--DKVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~l~~~i 232 (724)
|.....++|.+..+..|..++..++. ..+.++|+.|+||||+|+.+++..-..... .+... ..++.-...+.|
T Consensus 12 P~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~i 87 (618)
T PRK14951 12 PRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRDI 87 (618)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHHH
Confidence 34467788999999999998887665 456899999999999999998776321100 00000 001111111111
Q ss_pred HHhhCCC---CCC-CchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEE
Q 004895 233 ASDLGMN---FDS-NDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIIL 302 (724)
Q Consensus 233 ~~~l~~~---~~~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv 302 (724)
...-..+ .+. .....+....+.+... .++.-++|||+++... ..+.+...+.. ....+++|+
T Consensus 88 ~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE--------PP~~~~fIL 159 (618)
T PRK14951 88 DSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE--------PPEYLKFVL 159 (618)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc--------CCCCeEEEE
Confidence 1100000 000 0001111222222221 2455699999998653 33333332322 233455555
Q ss_pred Ee-cccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHH
Q 004895 303 TS-RSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALST 367 (724)
Q Consensus 303 Tt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 367 (724)
+| ....+...-......+++++++.++..+.+.+.+......- -.+....|++.++|.+.-+..
T Consensus 160 ~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i-e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 160 ATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA-EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred EECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHH
Confidence 54 43444322234457899999999999999988775332221 145678899999998755443
No 88
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.34 E-value=1.3e-05 Score=85.49 Aligned_cols=186 Identities=16% Similarity=0.210 Sum_probs=110.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcc--------------------CCCeE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDN--------------------VFDKV 214 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~ 214 (724)
|.....++|.++.++.+.+++..++. ..+.++|++|+||||+|+.+.+...... +++ +
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~-~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD-V 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-E
Confidence 34456778999999999998876654 4678999999999999999998864211 222 1
Q ss_pred EEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc--ccccccccccCCCCcCCCC
Q 004895 215 VMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK--LELDKIGIPYGDVDEKDKN 292 (724)
Q Consensus 215 ~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~ 292 (724)
++++.+......+ .+++.+.+.... ..+++-++|+|++... ...+.+...+..
T Consensus 89 ~~~~~~~~~~~~~-~~~l~~~~~~~p-----------------~~~~~~vviidea~~l~~~~~~~Ll~~le~------- 143 (355)
T TIGR02397 89 IEIDAASNNGVDD-IREILDNVKYAP-----------------SSGKYKVYIIDEVHMLSKSAFNALLKTLEE------- 143 (355)
T ss_pred EEeeccccCCHHH-HHHHHHHHhcCc-----------------ccCCceEEEEeChhhcCHHHHHHHHHHHhC-------
Confidence 2332221111111 122222221000 0134568999998654 223333222222
Q ss_pred CCCCCcEEEEEecccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHH
Q 004895 293 DDPRRCTIILTSRSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVA 369 (724)
Q Consensus 293 ~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 369 (724)
....+.+|++|.+.. +...-......+++.++++++..+.+...+......- -++.+..+++.++|.|..+....
T Consensus 144 -~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i-~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 144 -PPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI-EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred -CccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCChHHHHHHH
Confidence 234566666665443 2211123346789999999999999988774322111 14678889999999987664443
No 89
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=8.4e-06 Score=87.71 Aligned_cols=202 Identities=16% Similarity=0.185 Sum_probs=111.2
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEE-EecCCChHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAE-ITKNPDAQKIQGELA 233 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~l~~~i~ 233 (724)
|.....++|.+..++.|..++..++++ .+.++|+.|+||||+|..+++............|.. ....++.=...+.+.
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~ 91 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFD 91 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHh
Confidence 344567889999999999888876665 488999999999999999998874322111111110 001111111111111
Q ss_pred HhhCCC---CCC-CchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEE
Q 004895 234 SDLGMN---FDS-NDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILT 303 (724)
Q Consensus 234 ~~l~~~---~~~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 303 (724)
...... .+. .....+.+..+.+.+. .+++-++|+|++.... .++.+...+.. ....+.+|++
T Consensus 92 ~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe--------p~~~t~~Il~ 163 (397)
T PRK14955 92 AGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE--------PPPHAIFIFA 163 (397)
T ss_pred cCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc--------CCCCeEEEEE
Confidence 111000 000 0001122223333331 2456789999987653 34444333332 3345555555
Q ss_pred e-cccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHH
Q 004895 304 S-RSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 304 t-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 366 (724)
| +...+...-......+++.++++++..+.+...+..... .--++.+..|++.++|.+--+.
T Consensus 164 t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 164 TTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred eCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHH
Confidence 4 433332111222357889999999999888887642211 1125678899999999875443
No 90
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.32 E-value=2.1e-05 Score=78.24 Aligned_cols=166 Identities=13% Similarity=0.130 Sum_probs=98.6
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhH
Q 004895 168 IFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIY 247 (724)
Q Consensus 168 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~ 247 (724)
.+..+..+......+.+.|+|+.|+|||+|++.+++..... -..+.|+++.....
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~--~~~v~y~~~~~~~~----------------------- 86 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR--GRAVGYVPLDKRAW----------------------- 86 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEEHHHHhh-----------------------
Confidence 44444444444455689999999999999999999987643 23466776643100
Q ss_pred HHHHHHHHHHhcCCcEEEEEcccccc---cccccc-ccccCCCCcCCCCCCCCCcEEEEEecccchh--------hhhcC
Q 004895 248 HRAKQLCQRLKKEKRVLIILDNIWTK---LELDKI-GIPYGDVDEKDKNDDPRRCTIILTSRSRDLL--------CIDMN 315 (724)
Q Consensus 248 ~~~~~l~~~l~~~kr~LlVlDdv~~~---~~~~~l-~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~ 315 (724)
....+.+.+. +--+|++||+... ..|+.. ...+... ......++|+||+..... .....
T Consensus 87 -~~~~~~~~~~--~~dlliiDdi~~~~~~~~~~~~lf~l~n~~------~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~ 157 (235)
T PRK08084 87 -FVPEVLEGME--QLSLVCIDNIECIAGDELWEMAIFDLYNRI------LESGRTRLLITGDRPPRQLNLGLPDLASRLD 157 (235)
T ss_pred -hhHHHHHHhh--hCCEEEEeChhhhcCCHHHHHHHHHHHHHH------HHcCCCeEEEeCCCChHHcCcccHHHHHHHh
Confidence 0011222222 1248999999654 234321 1111100 012234699999865321 11234
Q ss_pred CCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 316 SQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 316 ~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
...+++++++++++-.+++.+++.... -.--+++..-|++.+.|..-.+..+
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a~~~~-~~l~~~v~~~L~~~~~~d~r~l~~~ 209 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRARLRG-FELPEDVGRFLLKRLDREMRTLFMT 209 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhhcCCHHHHHHH
Confidence 446899999999999999988764321 1122577888888888776655443
No 91
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.31 E-value=1.1e-05 Score=77.52 Aligned_cols=160 Identities=24% Similarity=0.252 Sum_probs=92.9
Q ss_pred HHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc--------------------cCCCeEEEEEEe-cCCChHHH
Q 004895 171 DVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMED--------------------NVFDKVVMAEIT-KNPDAQKI 228 (724)
Q Consensus 171 ~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs-~~~~~~~l 228 (724)
.+.+.+..++. ..+.++|+.|+||||+|+.+.+..... .+.|. .++... .....++
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~-~~~~~~~~~~~~~~- 80 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDL-HRLEPEGQSIKVDQ- 80 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcE-EEeccccCcCCHHH-
Confidence 34455555555 578899999999999999999886432 12222 222211 1112211
Q ss_pred HHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecc
Q 004895 229 QGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRS 306 (724)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 306 (724)
.+++.+.+.... ..+.+-++|+||+.... .++.+...+.. ....+.+|++|++
T Consensus 81 i~~i~~~~~~~~-----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~--------~~~~~~~il~~~~ 135 (188)
T TIGR00678 81 VRELVEFLSRTP-----------------QESGRRVVIIEDAERMNEAAANALLKTLEE--------PPPNTLFILITPS 135 (188)
T ss_pred HHHHHHHHccCc-----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcC--------CCCCeEEEEEECC
Confidence 112222221100 12456789999986643 23444333322 3345566666654
Q ss_pred cc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhH
Q 004895 307 RD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVA 364 (724)
Q Consensus 307 ~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 364 (724)
.. +..........+++.+++.++..+.+.+. + -. ++.+..|++.++|.|..
T Consensus 136 ~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~-g---i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 136 PEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ-G---IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred hHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc-C---CC---HHHHHHHHHHcCCCccc
Confidence 42 22211234468999999999999988886 2 11 46788999999998853
No 92
>PRK08727 hypothetical protein; Validated
Probab=98.31 E-value=1.3e-05 Score=79.53 Aligned_cols=170 Identities=11% Similarity=0.066 Sum_probs=99.2
Q ss_pred ccccchH-HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCC
Q 004895 160 NIFNSRK-KIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGM 238 (724)
Q Consensus 160 ~~~~gR~-~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 238 (724)
+.|++.. ..+..+...........+.|+|+.|+|||+|++.+++..... ...+.|+++.+ ....+
T Consensus 19 ~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~--~~~~~y~~~~~------~~~~~------ 84 (233)
T PRK08727 19 DSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA--GRSSAYLPLQA------AAGRL------ 84 (233)
T ss_pred hhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEeHHH------hhhhH------
Confidence 3444333 333333333333344579999999999999999999987643 23566776432 11111
Q ss_pred CCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc---cccc-cccccCCCCcCCCCCCCCCcEEEEEecccchh----
Q 004895 239 NFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL---ELDK-IGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL---- 310 (724)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~---- 310 (724)
....+.+. +.-+||+||+.... .|.. +...+.. ....+..||+|++...-.
T Consensus 85 ------------~~~~~~l~--~~dlLiIDDi~~l~~~~~~~~~lf~l~n~-------~~~~~~~vI~ts~~~p~~l~~~ 143 (233)
T PRK08727 85 ------------RDALEALE--GRSLVALDGLESIAGQREDEVALFDFHNR-------ARAAGITLLYTARQMPDGLALV 143 (233)
T ss_pred ------------HHHHHHHh--cCCEEEEeCcccccCChHHHHHHHHHHHH-------HHHcCCeEEEECCCChhhhhhh
Confidence 11222332 34599999996542 2221 1111110 012356699999864321
Q ss_pred ----hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 311 ----CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 311 ----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
.........+++++++.++-.+++.+++....- .--++...-|++.++|..-.+
T Consensus 144 ~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l-~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 144 LPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL-ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred hHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHhCCCCHHHH
Confidence 111233468899999999999999987753211 112567788888888766555
No 93
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1e-05 Score=89.17 Aligned_cols=184 Identities=14% Similarity=0.177 Sum_probs=111.1
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccC-------------------CCeEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNV-------------------FDKVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~-------------------F~~~~ 215 (724)
|.....++|.+..++.|..++..++.+ .+.++|+.|+||||+|+.+++..-.... |.-++
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~ 91 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLF 91 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEE
Confidence 445677889999999999999876655 4689999999999999999987643211 11133
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 293 (724)
.++.+....++++ +++++.+... -..++.-++|+|++.... ..+.+...+..
T Consensus 92 eidaas~~~v~~i-R~l~~~~~~~-----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-------- 145 (509)
T PRK14958 92 EVDAASRTKVEDT-RELLDNIPYA-----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-------- 145 (509)
T ss_pred EEcccccCCHHHH-HHHHHHHhhc-----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhc--------
Confidence 3333333333332 2233222110 012466799999997652 33333222222
Q ss_pred CCCCcEEEEEec-ccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHH
Q 004895 294 DPRRCTIILTSR-SRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 294 ~~~~s~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 366 (724)
....+++|++|. ...+...-.+....+++++++.++....+.+.+......- -.+....|++.++|.+.-+.
T Consensus 146 pp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~-~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 146 PPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF-ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred cCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHH
Confidence 233455555544 3333222233346788999999998888777764332221 14567789999999885443
No 94
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.30 E-value=6.1e-07 Score=68.38 Aligned_cols=56 Identities=29% Similarity=0.425 Sum_probs=26.9
Q ss_pred CceEEEcCCCcCCCCCc-cccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCc
Q 004895 576 ELKVLDFTGIRFSPLPS-SLGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAE 631 (724)
Q Consensus 576 ~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~ 631 (724)
+|++|++++|++..+|. .+..+++|++|++++|.++. +..+..+++|++|++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34555555555554442 34445555555555554444 1334445555555554443
No 95
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1e-07 Score=97.18 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=35.4
Q ss_pred CCCceEEEcCCCcCC--CCCccccCCCCCcEEEcCCcc-cCC-cccccCCCCCcEEEccCCcCcccc--hhhhcCCCCCe
Q 004895 574 TEELKVLDFTGIRFS--PLPSSLGRLINLQTLCLDGWR-LED-IAIVGQLKKLEILSLRGAEIKQLP--LQIGQLTRLQL 647 (724)
Q Consensus 574 l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~-l~~-~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~ 647 (724)
+++|+.|.+++|+++ .+-.....+++|..|.|.+|. +.. -.+..-++.|+.|||++|.+-.+| ..++.|+.|..
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence 445555555555554 122222334455555555552 111 122233444555555555444433 23455555555
Q ss_pred EccCC
Q 004895 648 LDLSN 652 (724)
Q Consensus 648 L~l~~ 652 (724)
|+++.
T Consensus 276 Lnls~ 280 (505)
T KOG3207|consen 276 LNLSS 280 (505)
T ss_pred hhccc
Confidence 55554
No 96
>PRK09087 hypothetical protein; Validated
Probab=98.29 E-value=1.6e-05 Score=78.31 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=88.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
..+.+.|+|+.|+|||+|++.+++.... .|++.. .+..++ ...+..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~-------~~i~~~------~~~~~~---------------------~~~~~~ 88 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDA-------LLIHPN------EIGSDA---------------------ANAAAE 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCC-------EEecHH------HcchHH---------------------HHhhhc
Confidence 4567999999999999999988876422 244332 111111 111111
Q ss_pred CCcEEEEEcccccccc-ccccccccCCCCcCCCCCCCCCcEEEEEecccchh--------hhhcCCCceEecCCCCHHHH
Q 004895 260 EKRVLIILDNIWTKLE-LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL--------CIDMNSQKMFWIDALSEEEA 330 (724)
Q Consensus 260 ~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~e~ 330 (724)
-+|++||+..... -+.+...+.. ....|..+|+|++...-. .........+++++++.++-
T Consensus 89 ---~~l~iDDi~~~~~~~~~lf~l~n~-------~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~ 158 (226)
T PRK09087 89 ---GPVLIEDIDAGGFDETGLFHLINS-------VRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALL 158 (226)
T ss_pred ---CeEEEECCCCCCCCHHHHHHHHHH-------HHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHH
Confidence 3788899964321 1111111110 023366799998853321 11234457899999999999
Q ss_pred HHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHH
Q 004895 331 LQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVAN 370 (724)
Q Consensus 331 ~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 370 (724)
.+++++++....- .--+++..-|++.+.|..-++..+-.
T Consensus 159 ~~iL~~~~~~~~~-~l~~ev~~~La~~~~r~~~~l~~~l~ 197 (226)
T PRK09087 159 SQVIFKLFADRQL-YVDPHVVYYLVSRMERSLFAAQTIVD 197 (226)
T ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999998854321 11257888899999888877664333
No 97
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.27 E-value=1.2e-05 Score=85.72 Aligned_cols=179 Identities=16% Similarity=0.196 Sum_probs=102.4
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 158 DYNIFNSRKKIFQDVIEALK----D---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
....+.|+++.+++|.+.+. . ...+-+.++|++|+|||++|+.+++.... .| +.+..
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~--~~-----~~v~~--- 189 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA--TF-----IRVVG--- 189 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC--CE-----Eecch---
Confidence 34567899999999887763 1 12456899999999999999999987643 22 22221
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccCCCCcCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-------------LDKIGIPYGDVDEKDK 291 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~ 291 (724)
.++.... ++ . .......+.+......+.+|+|||++.... ...+...+.. .+.
T Consensus 190 -~~l~~~~---~g-----~--~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~---ld~ 255 (364)
T TIGR01242 190 -SELVRKY---IG-----E--GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE---LDG 255 (364)
T ss_pred -HHHHHHh---hh-----H--HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHH---hhC
Confidence 1121111 11 0 112233344433445678999999975410 0011001100 001
Q ss_pred CCCCCCcEEEEEecccchhhhh----cCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 292 NDDPRRCTIILTSRSRDLLCID----MNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
.....+.+||.||......... ......+.++..+.++..++|+.++......++. ....+++.+.|..
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~--~~~~la~~t~g~s 328 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDV--DLEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccC--CHHHHHHHcCCCC
Confidence 1123467788888765422111 1224578899999999999999887543322221 2467888887764
No 98
>PLN03150 hypothetical protein; Provisional
Probab=98.27 E-value=1.9e-06 Score=98.10 Aligned_cols=108 Identities=21% Similarity=0.322 Sum_probs=86.3
Q ss_pred ccEEEEecccccccccchhhhcCCCCceEEEcCCCcCC-CCCccccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEc
Q 004895 551 LKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFS-PLPSSLGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSL 627 (724)
Q Consensus 551 Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l 627 (724)
++.|.+ .++.....+|. .+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.++. |..+++|++|++|+|
T Consensus 420 v~~L~L-~~n~L~g~ip~-~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGL-DNQGLRGFIPN-DISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEC-CCCCccccCCH-HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 566666 22222234444 5788999999999999998 789999999999999999999986 678999999999999
Q ss_pred cCCcCc-ccchhhhcC-CCCCeEccCCCCCCcccC
Q 004895 628 RGAEIK-QLPLQIGQL-TRLQLLDLSNCSSLVVIA 660 (724)
Q Consensus 628 ~~~~i~-~lp~~i~~l-~~L~~L~l~~~~~l~~~~ 660 (724)
++|.++ .+|..+..+ .++..+++.+|..+...|
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999988 889988764 567788888765555443
No 99
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.27 E-value=8.8e-09 Score=110.66 Aligned_cols=176 Identities=22% Similarity=0.213 Sum_probs=99.6
Q ss_pred ccCceEEeccCCCcccCCCcccC-CCccEEEEecccccccccchh---hhc---CCCCceEEEcCCCcCCCCCccccCCC
Q 004895 526 QKGPIAISLPYRDIQELPERLEC-PQLKLFLLFAKYDSTLQISDH---FFE---GTEELKVLDFTGIRFSPLPSSLGRLI 598 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~-~~Lr~L~l~~~~~~~~~~~~~---~~~---~l~~L~~L~l~~~~~~~lp~~i~~l~ 598 (724)
.+.+|+|-+..+++.......++ ..|+.|++..+-.....+... .++ ....|.+.+++.|.+..+-.++.-++
T Consensus 108 F~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ 187 (1096)
T KOG1859|consen 108 FRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLLP 187 (1096)
T ss_pred ccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHHH
Confidence 35788888888888665443332 346666653211111100000 000 11235566666666666666666677
Q ss_pred CCcEEEcCCcccCCcccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccC
Q 004895 599 NLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGD 677 (724)
Q Consensus 599 ~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 677 (724)
+|+.|+|+.|++.+...+..|++|.+|||++|.++.+|.- +..++ |+.|.+++ |-++.+ .+|.+|.+|+.||++.
T Consensus 188 ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn-N~l~tL--~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 188 ALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN-NALTTL--RGIENLKSLYGLDLSY 263 (1096)
T ss_pred HhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhh-heeeeecc-cHHHhh--hhHHhhhhhhccchhH
Confidence 7777777777776666667777777777777777666642 23333 77777766 445554 2366777777777766
Q ss_pred CCCccccccCCccchHHhhcCCCCCcEEEeecccc
Q 004895 678 SFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDA 712 (724)
Q Consensus 678 ~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~ 712 (724)
|.+ .+ -..+..|..|..|+.|.+.+|.+
T Consensus 264 Nll-----~~--hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 264 NLL-----SE--HSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhh-----hc--chhhhHHHHHHHHHHHhhcCCcc
Confidence 531 10 11233444555666777777654
No 100
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=2.1e-05 Score=87.94 Aligned_cols=200 Identities=10% Similarity=0.142 Sum_probs=112.6
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccCCC--eEEEEEEecCCChHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNVFD--KVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~l~~~i 232 (724)
|.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++......... ...+- .+..-.-.+.|
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~i 95 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQAI 95 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHHH
Confidence 455677899999999999998876654 688999999999999999998764321110 00000 00000111122
Q ss_pred HHhhCCCC---C-CCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEE
Q 004895 233 ASDLGMNF---D-SNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIIL 302 (724)
Q Consensus 233 ~~~l~~~~---~-~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv 302 (724)
......+. + ......+.+..+.+.+. .+++-++|+|++.... ..+.+...+.. ....+.+|+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe--------Pp~~~~fIl 167 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE--------PPPHVKFIF 167 (598)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh--------CCCCeEEEE
Confidence 21111000 0 00001112222322221 2455689999996653 23333222222 234555555
Q ss_pred Ee-cccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 303 TS-RSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 303 Tt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
+| ....+...-......+++.+++.++....+.+.+......- -.+....|++.++|.+.-+...
T Consensus 168 ~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i-~~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 168 ATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV-EDEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred EeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 44 43433322233456899999999999999988775332111 1467788999999998665443
No 101
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=3.3e-05 Score=82.66 Aligned_cols=183 Identities=15% Similarity=0.228 Sum_probs=105.6
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc------cCCCe-EEEEEEecCCChHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMED------NVFDK-VVMAEITKNPDAQK 227 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~------~~F~~-~~wv~vs~~~~~~~ 227 (724)
|.....++|.+...+.+...+..+.. +.+.++|+.|+||||+|+.+.+..... ..|.. ++-+......+..+
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 92 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSVDD 92 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCHHH
Confidence 34456778999999999999876654 478899999999999999998876431 11211 11111111111112
Q ss_pred HHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEe-
Q 004895 228 IQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTS- 304 (724)
Q Consensus 228 l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt- 304 (724)
+ +++++.+... .. .+++-++++|++.... .++.+...+.. ....+.+|++|
T Consensus 93 i-~~l~~~~~~~----------------p~-~~~~kiviIDE~~~l~~~~~~~ll~~le~--------~~~~~~~Il~~~ 146 (367)
T PRK14970 93 I-RNLIDQVRIP----------------PQ-TGKYKIYIIDEVHMLSSAAFNAFLKTLEE--------PPAHAIFILATT 146 (367)
T ss_pred H-HHHHHHHhhc----------------cc-cCCcEEEEEeChhhcCHHHHHHHHHHHhC--------CCCceEEEEEeC
Confidence 1 2222221100 00 1345689999986542 23333222221 22344555554
Q ss_pred cccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 305 RSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 305 R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
....+..........+++.++++++....+.+.+...... --++.+..|++.++|.+-.+
T Consensus 147 ~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~-i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 147 EKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK-FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred CcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhCCCCHHHH
Confidence 3333322223344589999999999999998877532211 11467888999999876533
No 102
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=2.1e-05 Score=90.99 Aligned_cols=183 Identities=11% Similarity=0.122 Sum_probs=108.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccCCC---------------------e
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNVFD---------------------K 213 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~---------------------~ 213 (724)
+.....++|.+..++.|..++..+++. .+.++|+.|+||||+|+.+++......... .
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~d 90 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLD 90 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCc
Confidence 344567889999999999998876664 578999999999999999998874321110 0
Q ss_pred EEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCC
Q 004895 214 VVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDK 291 (724)
Q Consensus 214 ~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ 291 (724)
+++++......++++ +++.+ .+...-..++.-++|||+++... ..+.+...+..
T Consensus 91 v~eidaas~~~Vd~i-R~l~~-----------------~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE------ 146 (824)
T PRK07764 91 VTEIDAASHGGVDDA-RELRE-----------------RAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE------ 146 (824)
T ss_pred EEEecccccCCHHHH-HHHHH-----------------HHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC------
Confidence 122222111122221 11111 11111112456689999997653 33343333322
Q ss_pred CCCCCCcEEEEEec-ccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 292 NDDPRRCTIILTSR-SRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 292 ~~~~~~s~ilvTtR-~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
-...+.+|++|. ...+...-......|++..++.++..+++.+.+....... -.+....|++.++|.+..+
T Consensus 147 --pP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~i-d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 147 --PPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPV-EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred --CCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHH
Confidence 234555555553 3333322234457899999999999998888764322211 1456678999999988433
No 103
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.25 E-value=2.3e-05 Score=86.83 Aligned_cols=187 Identities=17% Similarity=0.208 Sum_probs=112.0
Q ss_pred CcccccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCC-------------------eEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDK-LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFD-------------------KVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-------------------~~~ 215 (724)
|.....++|.+..+..|...+..++ ...+.++|+.|+||||+|+.+++..-.....+ -++
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~hpDv~ 91 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMHVDVV 91 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 3445677899988888888887655 46788899999999999999998764321110 022
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHH----hcCCcEEEEEccccccc--cccccccccCCCCcC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRL----KKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEK 289 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~ 289 (724)
++..+....+++ +..+.+.+ ..+++-++|+|++.... ..+.+...+..
T Consensus 92 eId~a~~~~Id~----------------------iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE---- 145 (624)
T PRK14959 92 EIDGASNRGIDD----------------------AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE---- 145 (624)
T ss_pred EEecccccCHHH----------------------HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc----
Confidence 222211111111 11222221 12466799999997652 23334322221
Q ss_pred CCCCCCCCcEEEEEecc-cchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch-hHHHH
Q 004895 290 DKNDDPRRCTIILTSRS-RDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP-VALST 367 (724)
Q Consensus 290 ~~~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~ 367 (724)
......+|++|.. ..+...-......+++.+++.++....+.+.+...... --.+.++.|++.++|.+ .|+..
T Consensus 146 ----P~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~-id~eal~lIA~~s~GdlR~Al~l 220 (624)
T PRK14959 146 ----PPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD-YDPAAVRLIARRAAGSVRDSMSL 220 (624)
T ss_pred ----cCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2234445555544 33322212334688999999999999998876532211 12467889999999965 67777
Q ss_pred HHHHhc
Q 004895 368 VANALK 373 (724)
Q Consensus 368 ~~~~l~ 373 (724)
+...+.
T Consensus 221 Leqll~ 226 (624)
T PRK14959 221 LGQVLA 226 (624)
T ss_pred HHHHHH
Confidence 765543
No 104
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.24 E-value=1.6e-05 Score=77.88 Aligned_cols=163 Identities=18% Similarity=0.161 Sum_probs=96.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKE 260 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 260 (724)
...+.|+|+.|+|||.|.+.+++.......=..++|++. .++...+...+.. .....+.+.+.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~------~~f~~~~~~~~~~---------~~~~~~~~~~~-- 96 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA------EEFIREFADALRD---------GEIEEFKDRLR-- 96 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH------HHHHHHHHHHHHT---------TSHHHHHHHHC--
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH------HHHHHHHHHHHHc---------ccchhhhhhhh--
Confidence 456899999999999999999999865322234667753 4555566555532 11234555554
Q ss_pred CcEEEEEcccccccc---ccc-cccccCCCCcCCCCCCCCCcEEEEEecccchh--------hhhcCCCceEecCCCCHH
Q 004895 261 KRVLIILDNIWTKLE---LDK-IGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL--------CIDMNSQKMFWIDALSEE 328 (724)
Q Consensus 261 kr~LlVlDdv~~~~~---~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~ 328 (724)
.-=+|++||++.... |+. +...+... ...|.+||+|++..... .......-.+++++.+.+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~-------~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~ 169 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRL-------IESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDE 169 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHH-------HHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HH
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHH-------HhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHH
Confidence 345899999976532 222 11111100 23466899999765321 112344568999999999
Q ss_pred HHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 329 EALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 329 e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
+-.+++.+.+....-. --+++++-|++.+.+..-.+..+
T Consensus 170 ~r~~il~~~a~~~~~~-l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 170 DRRRILQKKAKERGIE-LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHHHHHHTT---S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CcHHHHHHHHHhhcCCHHHHHHH
Confidence 9999999988632221 12567777777777666554433
No 105
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.5e-05 Score=88.33 Aligned_cols=186 Identities=16% Similarity=0.238 Sum_probs=108.3
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcc-------------------CCCeEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDN-------------------VFDKVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 215 (724)
|.....++|.+..++.|..++..++.. .+.++|+.|+||||+|+.+++...... .|..++
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ 91 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLI 91 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCcee
Confidence 344567889999999999988876655 467999999999999999998763211 111122
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccCCCCcCCCCC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--LDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~ 293 (724)
++..+....++++ +++++..... -..+++-++|+|++..... .+.+...+..
T Consensus 92 ei~~~~~~~vd~i-r~l~~~~~~~-----------------p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-------- 145 (527)
T PRK14969 92 EVDAASNTQVDAM-RELLDNAQYA-----------------PTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-------- 145 (527)
T ss_pred EeeccccCCHHHH-HHHHHHHhhC-----------------cccCCceEEEEcCcccCCHHHHHHHHHHHhC--------
Confidence 3322222222211 2222211100 0124667999999976532 3333222222
Q ss_pred CCCCcEEEEEecc-cchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh-HHHHH
Q 004895 294 DPRRCTIILTSRS-RDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV-ALSTV 368 (724)
Q Consensus 294 ~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 368 (724)
....+.+|++|.+ ..+...-......+++++++.++..+.+.+.+...... .-++....|++.++|.+- |+..+
T Consensus 146 pp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~-~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 146 PPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP-FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2234555555533 33321112234688999999999998888876432221 124567889999999875 44443
No 106
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.24 E-value=7.7e-07 Score=67.79 Aligned_cols=57 Identities=33% Similarity=0.560 Sum_probs=30.2
Q ss_pred CCcEEEccCCcCcccch-hhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 621 KLEILSLRGAEIKQLPL-QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 621 ~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
+|++|++++|.++.+|. .+..+++|++|++++ +.+..+++..+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 45555555555555543 244555555555554 3445555555555555555555543
No 107
>PF14516 AAA_35: AAA-like domain
Probab=98.23 E-value=0.00038 Score=72.94 Aligned_cols=211 Identities=15% Similarity=0.160 Sum_probs=121.3
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-----CChHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-----PDAQKIQGE 231 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~l~~~ 231 (724)
.+...++.|...-+.+.+.+.+. -..+.|.|+-.+|||+|...+.+..... .+. ++++++... .+.+..++.
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~-G~~~~I~apRq~GKTSll~~l~~~l~~~-~~~-~v~id~~~~~~~~~~~~~~f~~~ 84 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP-GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GYR-CVYIDLQQLGSAIFSDLEQFLRW 84 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC-CCEEEEECcccCCHHHHHHHHHHHHHHC-CCE-EEEEEeecCCCcccCCHHHHHHH
Confidence 34455678886677777777653 3589999999999999999999988764 343 557877652 245555555
Q ss_pred HHH----hhCCCCCCC-------chhHHHHHHHHHHHh--cCCcEEEEEcccccccccc----ccccccCCCCcCCCCCC
Q 004895 232 LAS----DLGMNFDSN-------DLIYHRAKQLCQRLK--KEKRVLIILDNIWTKLELD----KIGIPYGDVDEKDKNDD 294 (724)
Q Consensus 232 i~~----~l~~~~~~~-------~~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~~~~~----~l~~~~~~~~~~~~~~~ 294 (724)
++. +++....-. .........+.+.+. .+++.+|+||+++...... ++...+...-.......
T Consensus 85 ~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~ 164 (331)
T PF14516_consen 85 FCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNP 164 (331)
T ss_pred HHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCc
Confidence 544 444332100 001112222333332 2689999999997653211 11100000000000000
Q ss_pred C-CCcE-EEEEecccchh----hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 295 P-RRCT-IILTSRSRDLL----CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 295 ~-~~s~-ilvTtR~~~v~----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
. ..-+ |++.+...... .........++|++|+.+|...|+.+.-..- . ....++|...+||+|.-+..+
T Consensus 165 ~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~-~----~~~~~~l~~~tgGhP~Lv~~~ 239 (331)
T PF14516_consen 165 IWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF-S----QEQLEQLMDWTGGHPYLVQKA 239 (331)
T ss_pred ccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC-C----HHHHHHHHHHHCCCHHHHHHH
Confidence 0 1111 22222111111 1112344688999999999999988763221 1 234889999999999999999
Q ss_pred HHHhcCC
Q 004895 369 ANALKNK 375 (724)
Q Consensus 369 ~~~l~~~ 375 (724)
+..+...
T Consensus 240 ~~~l~~~ 246 (331)
T PF14516_consen 240 CYLLVEE 246 (331)
T ss_pred HHHHHHc
Confidence 9999753
No 108
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.22 E-value=1.3e-05 Score=85.81 Aligned_cols=178 Identities=17% Similarity=0.223 Sum_probs=101.1
Q ss_pred cccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 159 YNIFNSRKKIFQDVIEALK----D---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
...+.|+++.++++.+.+. . ...+-|.++|++|+|||++|+.+++..... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~-------~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT-------FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCC-------EEEeeh----
Confidence 4567799999988887653 1 235678999999999999999999876421 333321
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccCCCCcCCCC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-------------LDKIGIPYGDVDEKDKN 292 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~~ 292 (724)
.++.... .+ . .......+++......+.+|+|||++.... ...+...+.. .+..
T Consensus 199 ~~l~~~~---~g-----~--~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~---ld~~ 265 (389)
T PRK03992 199 SELVQKF---IG-----E--GARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAE---MDGF 265 (389)
T ss_pred HHHhHhh---cc-----c--hHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHh---cccc
Confidence 1121111 11 0 112233444444445678999999975310 0011111100 1111
Q ss_pred CCCCCcEEEEEecccchhhhh-c---CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 293 DDPRRCTIILTSRSRDLLCID-M---NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 293 ~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
....+..||.||......... . .....+.+++.+.++-.++|+.++......++. ....+++.+.|.-
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~--~~~~la~~t~g~s 337 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDV--DLEELAELTEGAS 337 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcC--CHHHHHHHcCCCC
Confidence 123456788777765432111 1 223578999999999999999887543222221 2456777776644
No 109
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.22 E-value=4e-05 Score=85.85 Aligned_cols=199 Identities=17% Similarity=0.196 Sum_probs=108.8
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEE-EecCCChHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAE-ITKNPDAQKIQGELA 233 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~l~~~i~ 233 (724)
|.....++|.+..+..|..++..+++. .+.++|+.|+||||+|+.+++..-.....+.-.|.. +...++.-...+.+.
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~~ 91 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDFD 91 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHHh
Confidence 344677889999999999888776664 488999999999999999998874322111001110 001111111111111
Q ss_pred HhhCCC---CCC-CchhHHHHHHHHHHH----hcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEE-E
Q 004895 234 SDLGMN---FDS-NDLIYHRAKQLCQRL----KKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTII-L 302 (724)
Q Consensus 234 ~~l~~~---~~~-~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il-v 302 (724)
..-... .+. .....+.+..+.+.+ ..+++-++|+|+++... ..+.+...+.. ....+.+| +
T Consensus 92 ~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe--------Pp~~tv~IL~ 163 (620)
T PRK14954 92 AGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE--------PPPHAIFIFA 163 (620)
T ss_pred ccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC--------CCCCeEEEEE
Confidence 111000 000 000112222233333 12456689999987653 23333322322 22344444 4
Q ss_pred EecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh
Q 004895 303 TSRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV 363 (724)
Q Consensus 303 TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 363 (724)
|++...+...-......+++.+++.++....+.+.+...... --.+.+..|++.++|..-
T Consensus 164 t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~-I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 164 TTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ-IDADALQLIARKAQGSMR 223 (620)
T ss_pred eCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCHH
Confidence 444333322223456789999999999988888766422211 114678899999999665
No 110
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.20 E-value=5.1e-06 Score=86.37 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=65.2
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC--CChHHHHHHHHHhhCCC-CCCCchh-HHH----H
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN--PDAQKIQGELASDLGMN-FDSNDLI-YHR----A 250 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~l~~~i~~~l~~~-~~~~~~~-~~~----~ 250 (724)
+.-..++|+|++|+|||||++.+++....+ +|+..+|+.+.+. .++.++++.+...+-.. .+.+... ... .
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~ 244 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVI 244 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHH
Confidence 445689999999999999999999998764 8999999999977 68888988885433211 1211111 111 1
Q ss_pred HHHHHHHhcCCcEEEEEcccccc
Q 004895 251 KQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 251 ~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
.........+++++|++|++...
T Consensus 245 e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 245 EKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHcCCCeEEEEEChhHH
Confidence 12222223589999999999654
No 111
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=5.1e-05 Score=84.40 Aligned_cols=186 Identities=15% Similarity=0.188 Sum_probs=111.0
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccE-EEEEcCCCCcHHHHHHHHHHHHhhccCCC---------------------e
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNI-IGVCGMGGVGKTTLVKQIAKQVMEDNVFD---------------------K 213 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~~F~---------------------~ 213 (724)
|.....++|.+..++.|..++..++..- +.++|+.|+||||+|+.+++........+ -
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~d 88 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSID 88 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCce
Confidence 4456778899999999999988776654 68999999999999999998764221111 0
Q ss_pred EEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHH----hcCCcEEEEEccccccc--cccccccccCCCC
Q 004895 214 VVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRL----KKEKRVLIILDNIWTKL--ELDKIGIPYGDVD 287 (724)
Q Consensus 214 ~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~ 287 (724)
++.++.+...++++ ...+.+.. ..+++-++|+|++.... ..+.+...+..
T Consensus 89 vieidaas~~gvd~----------------------iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-- 144 (584)
T PRK14952 89 VVELDAASHGGVDD----------------------TRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-- 144 (584)
T ss_pred EEEeccccccCHHH----------------------HHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc--
Confidence 11222211111111 12222221 12456699999986542 33333222222
Q ss_pred cCCCCCCCCCcEEE-EEecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh-HH
Q 004895 288 EKDKNDDPRRCTII-LTSRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV-AL 365 (724)
Q Consensus 288 ~~~~~~~~~~s~il-vTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai 365 (724)
....+.+| +||....+...-.+....+++.+++.++..+.+.+.+......- -.+....|++.++|.+- ++
T Consensus 145 ------pp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i-~~~al~~Ia~~s~GdlR~al 217 (584)
T PRK14952 145 ------PPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV-DDAVYPLVIRAGGGSPRDTL 217 (584)
T ss_pred ------CCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 23345555 45444444322233457899999999999988888765332211 14567889999999874 44
Q ss_pred HHHHHHh
Q 004895 366 STVANAL 372 (724)
Q Consensus 366 ~~~~~~l 372 (724)
..+-.++
T Consensus 218 n~Ldql~ 224 (584)
T PRK14952 218 SVLDQLL 224 (584)
T ss_pred HHHHHHH
Confidence 4444433
No 112
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.18 E-value=2e-05 Score=77.54 Aligned_cols=190 Identities=16% Similarity=0.134 Sum_probs=120.3
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeE-EEEEEecCCChHHHHHHH--
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKV-VMAEITKNPDAQKIQGEL-- 232 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~-~wv~vs~~~~~~~l~~~i-- 232 (724)
|...+.++|.+...+-|...+.....++...+||+|.|||+.|..++...-..+.|.+. .=.++|......-+-..+
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~ 111 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKN 111 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcC
Confidence 66677888999999999999887778899999999999999999999987665566553 445666554433111111
Q ss_pred HHhhCCCCCCCchhHHHHHHHHHHH-hcCCc-EEEEEcccccc--ccccccccccCCCCcCCCCCCCCCcEEE-EEeccc
Q 004895 233 ASDLGMNFDSNDLIYHRAKQLCQRL-KKEKR-VLIILDNIWTK--LELDKIGIPYGDVDEKDKNDDPRRCTII-LTSRSR 307 (724)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~l~~~l-~~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~il-vTtR~~ 307 (724)
..++...... .. ..-++ -.+|||+++.. +.|..+...+.. ....++.+ ||+--.
T Consensus 112 fakl~~~~~~-------------~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~--------~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 112 FAKLTVLLKR-------------SDGYPCPPFKIIILDECDSMTSDAQAALRRTMED--------FSRTTRFILICNYLS 170 (346)
T ss_pred HHHHhhcccc-------------ccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc--------cccceEEEEEcCChh
Confidence 0001000000 00 00123 48899999765 567777555443 44555544 444333
Q ss_pred chhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHH
Q 004895 308 DLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALST 367 (724)
Q Consensus 308 ~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 367 (724)
.+...-.....-+..++|.+++...-++..+..+.-.-+ .+..+.|++.++|.-.-+.+
T Consensus 171 rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d-~~al~~I~~~S~GdLR~Ait 229 (346)
T KOG0989|consen 171 RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID-DDALKLIAKISDGDLRRAIT 229 (346)
T ss_pred hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHcCCcHHHHHH
Confidence 332222334467889999999999999988864333222 45678899999986543333
No 113
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.18 E-value=4.5e-05 Score=86.00 Aligned_cols=182 Identities=15% Similarity=0.216 Sum_probs=110.7
Q ss_pred cccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhh---------------------ccCCCeE
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVME---------------------DNVFDKV 214 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~---------------------~~~F~~~ 214 (724)
.....++|.+...+.|..++..++.. .+.++|+.|+||||+|+.++..... ..+|+ +
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n-~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN-I 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc-e
Confidence 34567889999999999998876664 4789999999999999999887631 12333 2
Q ss_pred EEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCC
Q 004895 215 VMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKN 292 (724)
Q Consensus 215 ~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 292 (724)
..++.++..+.+++ ++++.++.... ..+++-++|+|++.... .++.+...+..
T Consensus 93 ~~ld~~~~~~vd~I-r~li~~~~~~P-----------------~~~~~KVvIIdea~~Ls~~a~naLLK~LEe------- 147 (614)
T PRK14971 93 HELDAASNNSVDDI-RNLIEQVRIPP-----------------QIGKYKIYIIDEVHMLSQAAFNAFLKTLEE------- 147 (614)
T ss_pred EEecccccCCHHHH-HHHHHHHhhCc-----------------ccCCcEEEEEECcccCCHHHHHHHHHHHhC-------
Confidence 23333322222222 22222221100 11355689999987653 34444333322
Q ss_pred CCCCCcEEEE-EecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHH
Q 004895 293 DDPRRCTIIL-TSRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 293 ~~~~~s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 366 (724)
....+.+|+ |+....+...-......+++.++++++....+.+.+....-.. -.+.+..|++.++|..--+.
T Consensus 148 -pp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i-~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 148 -PPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITA-EPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred -CCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHH
Confidence 233455554 5444444322234457899999999999999988765332211 14567899999999775443
No 114
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.17 E-value=2.3e-05 Score=91.74 Aligned_cols=184 Identities=14% Similarity=0.152 Sum_probs=105.8
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccC----CCeEEE-EEEecCCChHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV----FDKVVM-AEITKNPDAQKIQG 230 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~l~~ 230 (724)
+....+++||++++.++++.|......-+.++|++|+||||+|+.+++....... .+..+| +.++.-.
T Consensus 183 ~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~------- 255 (852)
T TIGR03345 183 EGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQ------- 255 (852)
T ss_pred CCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhh-------
Confidence 3445788999999999999988666667779999999999999999998753211 122332 3322100
Q ss_pred HHHHhhCCCCCCCchhHHHHHHHHHHHh-cCCcEEEEEcccccccc-------cc--ccccccCCCCcCCCCCCCCCcEE
Q 004895 231 ELASDLGMNFDSNDLIYHRAKQLCQRLK-KEKRVLIILDNIWTKLE-------LD--KIGIPYGDVDEKDKNDDPRRCTI 300 (724)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~-------~~--~l~~~~~~~~~~~~~~~~~~s~i 300 (724)
. +.... .. .......+...+. .+++.+|++|++..... -+ .+..|.- ....-++
T Consensus 256 ---a--g~~~~-ge-~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---------~~G~l~~ 319 (852)
T TIGR03345 256 ---A--GASVK-GE-FENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---------ARGELRT 319 (852)
T ss_pred ---c--ccccc-hH-HHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---------hCCCeEE
Confidence 0 00000 00 1223333444433 24689999999965421 11 1111211 2233556
Q ss_pred EEEecccch------hhhhcCCCceEecCCCCHHHHHHHHHHHhCC---CCCCCCchhHHHHHHHHhCCch
Q 004895 301 ILTSRSRDL------LCIDMNSQKMFWIDALSEEEALQLFEKIVGE---STKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 301 lvTtR~~~v------~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~l~~~~~~I~~~c~GlP 362 (724)
|-||..... ..........+.+++++.+++.++++..... ...-.-..+....+++.+.++.
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 666654321 0111234568999999999999997655421 1111112456677777776654
No 115
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.13 E-value=1.6e-06 Score=98.35 Aligned_cols=135 Identities=22% Similarity=0.284 Sum_probs=73.0
Q ss_pred CCceEEEcCCCcCC--CCCcccc-CCCCCcEEEcCCcccCC--c-ccccCCCCCcEEEccCCcCcccchhhhcCCCCCeE
Q 004895 575 EELKVLDFTGIRFS--PLPSSLG-RLINLQTLCLDGWRLED--I-AIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLL 648 (724)
Q Consensus 575 ~~L~~L~l~~~~~~--~lp~~i~-~l~~L~~L~L~~~~l~~--~-~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 648 (724)
.+|+.||++|.... .-|..++ .|++|+.|.+++-.+.. . .-..+++||..||+|+|.++.+ .++++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 45666676664432 1233333 35667777776655433 1 3344667777777777777766 667777777777
Q ss_pred ccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccc
Q 004895 649 DLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDA 712 (724)
Q Consensus 649 ~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~ 712 (724)
.+.+-..-...--..+.+|++|+.||++....... .......+..-..|++||.||.|++.+
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~--~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDD--TKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccc--hHHHHHHHHhcccCccccEEecCCcch
Confidence 66552211111112356777777777765321111 001111223334577777777777664
No 116
>PRK05642 DNA replication initiation factor; Validated
Probab=98.13 E-value=8.1e-05 Score=73.89 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=92.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKE 260 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 260 (724)
...+.|+|..|+|||.|++.+++....+ -..++|++..+ +... ...+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~--~~~v~y~~~~~------~~~~------------------~~~~~~~~~~- 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQR--GEPAVYLPLAE------LLDR------------------GPELLDNLEQ- 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhC--CCcEEEeeHHH------HHhh------------------hHHHHHhhhh-
Confidence 3578999999999999999999877543 23467776532 2111 0123333332
Q ss_pred CcEEEEEcccccc---ccccc-cccccCCCCcCCCCCCCCCcEEEEEecccchh--------hhhcCCCceEecCCCCHH
Q 004895 261 KRVLIILDNIWTK---LELDK-IGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL--------CIDMNSQKMFWIDALSEE 328 (724)
Q Consensus 261 kr~LlVlDdv~~~---~~~~~-l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~ 328 (724)
- =+||+||+... ..|+. +...+.. ....|..+|+|++...-. .........+++++++.+
T Consensus 98 ~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~-------~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e 169 (234)
T PRK05642 98 Y-ELVCLDDLDVIAGKADWEEALFHLFNR-------LRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDE 169 (234)
T ss_pred C-CEEEEechhhhcCChHHHHHHHHHHHH-------HHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHH
Confidence 1 27889999643 23432 2221111 023456788888865421 111223467899999999
Q ss_pred HHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHH
Q 004895 329 EALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVAN 370 (724)
Q Consensus 329 e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 370 (724)
+-.++++.++.... -.--+++..-|++.+.|..-.+..+-.
T Consensus 170 ~~~~il~~ka~~~~-~~l~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 170 DKLRALQLRASRRG-LHLTDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999996664321 111156778888888887665544433
No 117
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.13 E-value=9.2e-05 Score=80.63 Aligned_cols=185 Identities=15% Similarity=0.193 Sum_probs=107.1
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcc---------------------CCCe
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDN---------------------VFDK 213 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------------------~F~~ 213 (724)
|.....++|.+..+..+..++..++. ..+.++|+.|+||||+|+.+++...... +++
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 34456788999999999998876665 5678999999999999999998764311 111
Q ss_pred EEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCC
Q 004895 214 VVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDK 291 (724)
Q Consensus 214 ~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~ 291 (724)
++++........+++ +++.+.+ ...-..+++-++|+|++.... ..+.+...+..
T Consensus 92 ~~~i~g~~~~gid~i-r~i~~~l-----------------~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe------ 147 (451)
T PRK06305 92 VLEIDGASHRGIEDI-RQINETV-----------------LFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE------ 147 (451)
T ss_pred eEEeeccccCCHHHH-HHHHHHH-----------------HhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc------
Confidence 111211111112111 1111111 000012466789999986542 22333222222
Q ss_pred CCCCCCcEEEEEecc-cchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh-HHHHH
Q 004895 292 NDDPRRCTIILTSRS-RDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV-ALSTV 368 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 368 (724)
....+.+|++|.. ..+...-......+++.++++++....+.+.+...... --++.+..|++.++|.+- |+..+
T Consensus 148 --p~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~-i~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 148 --PPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE-TSREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred --CCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2235556655533 32222113345689999999999999888876432211 124678899999999764 44443
No 118
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.12 E-value=7.6e-05 Score=81.81 Aligned_cols=186 Identities=13% Similarity=0.203 Sum_probs=110.6
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccC------------------CC-eEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNV------------------FD-KVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~------------------F~-~~~ 215 (724)
|.....++|.+...+.|...+..++.. +..++|+.|+||||+|+.+++..-.... +. .++
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~ 89 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDII 89 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEE
Confidence 344667889999999999888776665 5689999999999999999887632111 11 122
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 293 (724)
.+..+....++++ ++++..... .-..+++-++|+|++.... ..+.+...+..
T Consensus 90 eldaas~~gId~I-Relie~~~~-----------------~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-------- 143 (535)
T PRK08451 90 EMDAASNRGIDDI-RELIEQTKY-----------------KPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-------- 143 (535)
T ss_pred EeccccccCHHHH-HHHHHHHhh-----------------CcccCCeEEEEEECcccCCHHHHHHHHHHHhh--------
Confidence 2222221222222 111111100 0001456699999996552 23333222222
Q ss_pred CCCCcEEEEEeccc-chhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 294 DPRRCTIILTSRSR-DLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 294 ~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
....+++|++|.+. .+...-......+++.+++.++....+.+.+......- -++.++.|++.++|.+.-+...
T Consensus 144 pp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i-~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 144 PPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSY-EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred cCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHH
Confidence 23456666666543 22211123456899999999999999988775332221 2567889999999998555444
No 119
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.12 E-value=2.4e-05 Score=79.29 Aligned_cols=155 Identities=18% Similarity=0.245 Sum_probs=79.6
Q ss_pred ccccchHHHHHHHHH---Hhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 160 NIFNSRKKIFQDVIE---ALK------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~---~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
..++|.+..++++.+ +.. .+...-+.++|++|+||||+|+.+++.......-....++.++.
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~--- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVER--- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecH---
Confidence 346677666655543 321 12345678999999999999999998764322111112333322
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc----------cccccccccCCCCcCCCCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL----------ELDKIGIPYGDVDEKDKNDD 294 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~~~~~ 294 (724)
.++.... .+ .. . ..+.+.+......+|++|++.... ..+.+...+.. .
T Consensus 83 -~~l~~~~---~g-----~~--~---~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~--------~ 140 (261)
T TIGR02881 83 -ADLVGEY---IG-----HT--A---QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMED--------N 140 (261)
T ss_pred -HHhhhhh---cc-----ch--H---HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhc--------c
Confidence 1221110 11 10 1 112222222234589999997532 11222222211 2
Q ss_pred CCCcEEEEEecccchh-------hhhcCCCceEecCCCCHHHHHHHHHHHhC
Q 004895 295 PRRCTIILTSRSRDLL-------CIDMNSQKMFWIDALSEEEALQLFEKIVG 339 (724)
Q Consensus 295 ~~~s~ilvTtR~~~v~-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 339 (724)
.....+++++...... .........+.+++++.+|-.+++.+.+.
T Consensus 141 ~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 141 RNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 2333455555443220 11111234688999999999999988775
No 120
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=6.7e-05 Score=84.52 Aligned_cols=182 Identities=18% Similarity=0.232 Sum_probs=107.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCC-C---------------eEEEEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVF-D---------------KVVMAE 218 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~---------------~~~wv~ 218 (724)
|.....++|.+..++.|..++..+++ ..+.++|+.|+||||+|+.+++..-..... . .++++.
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieid 93 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMD 93 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEe
Confidence 44456788999999999999876654 456789999999999999998875321110 0 011111
Q ss_pred EecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCC
Q 004895 219 ITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKN 292 (724)
Q Consensus 219 vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~ 292 (724)
.+.... .+.+..+.+.+. .+++-++|+|++.... .++.+...+..
T Consensus 94 aasn~~----------------------vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE------- 144 (725)
T PRK07133 94 AASNNG----------------------VDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE------- 144 (725)
T ss_pred ccccCC----------------------HHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-------
Confidence 111111 112223333322 2466799999986542 34343222222
Q ss_pred CCCCCcE-EEEEecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh-HHHHH
Q 004895 293 DDPRRCT-IILTSRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV-ALSTV 368 (724)
Q Consensus 293 ~~~~~s~-ilvTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 368 (724)
....+. |++|++...+...-......+++.+++.++....+...+....... -.+.+..|++.++|.+. |+..+
T Consensus 145 -PP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~i-d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 145 -PPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISY-EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred -CCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHH
Confidence 222344 4455554444322234456899999999999999888664322111 14567889999999775 44433
No 121
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.11 E-value=0.00033 Score=73.02 Aligned_cols=199 Identities=16% Similarity=0.156 Sum_probs=122.9
Q ss_pred cccccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALK----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 232 (724)
..+....||+.+++.+.+++. ....+-+-|.|.+|.|||.+...++.+......=-.++++++..-.....++..|
T Consensus 147 ~~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 147 APPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 345668899999999888875 3456789999999999999999999988653221245777777656777888888
Q ss_pred HHhhCCCCCCCchhHHHHHHHHHHHhcCC-cEEEEEcccccccc--ccccccccCCCCcCCCCCCCCCcEEEEEecccch
Q 004895 233 ASDLGMNFDSNDLIYHRAKQLCQRLKKEK-RVLIILDNIWTKLE--LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL 309 (724)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-r~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 309 (724)
...+...........+....+.++..+.+ .+|+|+|..+.... -..+...|.+ ...+++++|+.--....
T Consensus 227 ~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFew-------p~lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 227 FSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEW-------PKLPNSRIILIGIANSL 299 (529)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhc-------ccCCcceeeeeeehhhh
Confidence 88773322222223344555666665444 79999999865321 1111111111 02344554433222111
Q ss_pred ---------hhh-hcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 310 ---------LCI-DMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 310 ---------~~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
... ..-....+..+|.+.++..++|..+.......+.+....+-+++||.|.-
T Consensus 300 DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~S 362 (529)
T KOG2227|consen 300 DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPS 362 (529)
T ss_pred hHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCc
Confidence 111 12234578889999999999999988654444444444555555655443
No 122
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.11 E-value=4e-05 Score=89.14 Aligned_cols=160 Identities=18% Similarity=0.220 Sum_probs=93.5
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCC----CeEEEEEEecCCChHHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVF----DKVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~l~~~i 232 (724)
...++++||++++.++++.|......-+.++|++|+|||++|+.+++........ +..+|.. +... +
T Consensus 179 ~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~----l 249 (731)
T TIGR02639 179 GKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGS----L 249 (731)
T ss_pred CCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHH----H
Confidence 3456789999999999998876666667899999999999999999987442211 3333321 1111 1
Q ss_pred HHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc----------ccccccccCCCCcCCCCCCCCCcEEEE
Q 004895 233 ASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE----------LDKIGIPYGDVDEKDKNDDPRRCTIIL 302 (724)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------~~~l~~~~~~~~~~~~~~~~~~s~ilv 302 (724)
.... .... . .+.....+.+.+...++.+|++|++..... ...+..+.- ....-++|-
T Consensus 250 ~a~~--~~~g-~-~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l---------~~g~i~~Ig 316 (731)
T TIGR02639 250 LAGT--KYRG-D-FEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL---------SSGKLRCIG 316 (731)
T ss_pred hhhc--cccc-h-HHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHH---------hCCCeEEEE
Confidence 1100 0001 1 233445555555444679999999974421 111111111 112234444
Q ss_pred Eecccch----h--hhhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 303 TSRSRDL----L--CIDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 303 TtR~~~v----~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
+|..... . .........+.+++++.++..++++...
T Consensus 317 aTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred ecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4443211 0 1112234689999999999999999765
No 123
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.09 E-value=3.4e-05 Score=78.08 Aligned_cols=170 Identities=16% Similarity=0.163 Sum_probs=105.3
Q ss_pred ccccchHHHHHHHHHHhcCCC---ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhh
Q 004895 160 NIFNSRKKIFQDVIEALKDDK---LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDL 236 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~~~~---~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 236 (724)
..|-+|+.++..+...+.+.. ++.|.|+|.+|.|||.+.+++.+.... ..+|+++-+.++...++..|+.+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 345689999999998886433 345589999999999999999988732 268999999999999999999998
Q ss_pred C-CCCCCCchhH--HHHHHHHHHHh-------cCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecc
Q 004895 237 G-MNFDSNDLIY--HRAKQLCQRLK-------KEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRS 306 (724)
Q Consensus 237 ~-~~~~~~~~~~--~~~~~l~~~l~-------~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 306 (724)
+ .+.++..... +........+. .++.++||||+++...+.+....+ .+.........+. -+|+++-.
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~--~l~~L~el~~~~~-i~iils~~ 157 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQ--CLFRLYELLNEPT-IVIILSAP 157 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHH--HHHHHHHHhCCCc-eEEEEecc
Confidence 6 2222211111 12222222221 246799999999877655443111 0000000112233 34444443
Q ss_pred cchh--hhhcCC--CceEecCCCCHHHHHHHHHHH
Q 004895 307 RDLL--CIDMNS--QKMFWIDALSEEEALQLFEKI 337 (724)
Q Consensus 307 ~~v~--~~~~~~--~~~~~l~~L~~~e~~~Lf~~~ 337 (724)
..-. ...++. ..++..+.-+.+|..+++.+.
T Consensus 158 ~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 158 SCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3221 111233 346677889999999988764
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.08 E-value=3.5e-05 Score=80.73 Aligned_cols=150 Identities=12% Similarity=0.144 Sum_probs=87.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|.++..+.+..++..+.. .++.++|++|+||||+|+.+++.... .+..++.+. .....+ +..+.
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~-----~~~~i~~~~-~~~~~i-~~~l~ 89 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA-----EVLFVNGSD-CRIDFV-RNRLT 89 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-----cceEeccCc-ccHHHH-HHHHH
Confidence 45567788999999999998876654 56666999999999999999887531 134455444 222111 11111
Q ss_pred hhCCCCCCCchhHHHHHHHHHHH-hcCCcEEEEEccccccc--c-ccccccccCCCCcCCCCCCCCCcEEEEEecccchh
Q 004895 235 DLGMNFDSNDLIYHRAKQLCQRL-KKEKRVLIILDNIWTKL--E-LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL 310 (724)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~l~~~l-~~~kr~LlVlDdv~~~~--~-~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 310 (724)
. ..... ..+.+-++|+||+.... . ...+...+.. ...++++|+||......
T Consensus 90 ~-----------------~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~--------~~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 90 R-----------------FASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA--------YSKNCSFIITANNKNGI 144 (316)
T ss_pred H-----------------HHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh--------cCCCceEEEEcCChhhc
Confidence 1 01111 01345689999996541 1 1122221222 34567888888654321
Q ss_pred -hhhcCCCceEecCCCCHHHHHHHHHHH
Q 004895 311 -CIDMNSQKMFWIDALSEEEALQLFEKI 337 (724)
Q Consensus 311 -~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 337 (724)
..-......+.++..+.++..+++...
T Consensus 145 ~~~l~sR~~~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 145 IEPLRSRCRVIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred hHHHHhhceEEEeCCCCHHHHHHHHHHH
Confidence 111223346777778888877766543
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00011 Score=80.53 Aligned_cols=183 Identities=16% Similarity=0.177 Sum_probs=106.7
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcc-------------------CCCeEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDN-------------------VFDKVV 215 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 215 (724)
|.....++|.+.....+..++..++.. .+.++|+.|+||||+|+.++....... .|..++
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 344567789999999999998766554 567899999999999999988753110 011122
Q ss_pred EEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcC
Q 004895 216 MAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEK 289 (724)
Q Consensus 216 wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~ 289 (724)
++..+......+ ...+..... .+++-++|+|++.... ..+.+...+..
T Consensus 92 eidaas~~gvd~----------------------ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe---- 145 (486)
T PRK14953 92 EIDAASNRGIDD----------------------IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE---- 145 (486)
T ss_pred EEeCccCCCHHH----------------------HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc----
Confidence 222221111111 122222221 2456799999986542 23333222222
Q ss_pred CCCCCCCCcEEEE-EecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 290 DKNDDPRRCTIIL-TSRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 290 ~~~~~~~~s~ilv-TtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
......+|+ ||+...+...-......+.+.+++.++....+.+.+...... --.+.+..|++.++|.+..+...
T Consensus 146 ----pp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~-id~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 146 ----PPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE-YEEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred ----CCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 222344444 444333322112334689999999999999888876432211 12456788999999977655444
Q ss_pred H
Q 004895 369 A 369 (724)
Q Consensus 369 ~ 369 (724)
.
T Consensus 221 L 221 (486)
T PRK14953 221 L 221 (486)
T ss_pred H
Confidence 3
No 126
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.05 E-value=3.6e-05 Score=76.41 Aligned_cols=164 Identities=9% Similarity=0.074 Sum_probs=93.9
Q ss_pred HHHHHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhH
Q 004895 169 FQDVIEALK-DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIY 247 (724)
Q Consensus 169 ~~~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~ 247 (724)
+..+.++.. ......+.|+|+.|+|||+||+.+++..... . ..+.+++...... . +
T Consensus 29 ~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-~-~~~~~i~~~~~~~------~----~----------- 85 (227)
T PRK08903 29 VARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-G-RNARYLDAASPLL------A----F----------- 85 (227)
T ss_pred HHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-C-CcEEEEehHHhHH------H----H-----------
Confidence 344444433 2345678899999999999999999986432 1 2345555433110 0 0
Q ss_pred HHHHHHHHHHhcCCcEEEEEcccccccccc--ccccccCCCCcCCCCCCCCCc-EEEEEecccchhh-------hhcCCC
Q 004895 248 HRAKQLCQRLKKEKRVLIILDNIWTKLELD--KIGIPYGDVDEKDKNDDPRRC-TIILTSRSRDLLC-------IDMNSQ 317 (724)
Q Consensus 248 ~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~--~l~~~~~~~~~~~~~~~~~~s-~ilvTtR~~~v~~-------~~~~~~ 317 (724)
... ...-+||+||+.....+. .+...+... ...+. .+|+|++...... ......
T Consensus 86 -------~~~--~~~~~liiDdi~~l~~~~~~~L~~~~~~~-------~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~ 149 (227)
T PRK08903 86 -------DFD--PEAELYAVDDVERLDDAQQIALFNLFNRV-------RAHGQGALLVAGPAAPLALPLREDLRTRLGWG 149 (227)
T ss_pred -------hhc--ccCCEEEEeChhhcCchHHHHHHHHHHHH-------HHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcC
Confidence 011 233579999996543221 121111110 12233 4666666533210 012223
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHh
Q 004895 318 KMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANAL 372 (724)
Q Consensus 318 ~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 372 (724)
..++++++++++-..++.+.+.... ..--++..+.+++.+.|.+..+..+...+
T Consensus 150 ~~i~l~pl~~~~~~~~l~~~~~~~~-v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 150 LVYELKPLSDADKIAALKAAAAERG-LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 6889999999988888777543221 11125678889999999998877666554
No 127
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.05 E-value=0.0001 Score=83.25 Aligned_cols=198 Identities=14% Similarity=0.164 Sum_probs=111.7
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
+.....++|.+..++.|..++..++. ..+.++|+.|+||||+|+.+++......... -...++.-...+.|..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIAE 85 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHhc
Confidence 34456788999999999888876655 4568999999999999999998764211100 0011111222333332
Q ss_pred hhCCCC---CC-CchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEe
Q 004895 235 DLGMNF---DS-NDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTS 304 (724)
Q Consensus 235 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 304 (724)
...... +. .....+....+.+.+. .+++-++|+|++.... ..+.+...+.. ....+.+|+++
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe--------pp~~tv~Il~t 157 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE--------PPPHAIFILAT 157 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc--------CCCCeEEEEEe
Confidence 221110 00 0001112222222221 1456799999996542 23333222222 22345566555
Q ss_pred cc-cchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 305 RS-RDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 305 R~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
.. ..+...-......+.+.+++.++....+.+.+......- -.+.+..|++.++|.+..+...
T Consensus 158 ~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i-~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 158 TEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINL-EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred CChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 43 333221123346788999999999999888775332211 1467889999999988655443
No 128
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=0.0001 Score=74.17 Aligned_cols=205 Identities=17% Similarity=0.204 Sum_probs=118.4
Q ss_pred ccccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 158 DYNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
....+-|-++.+++|.+... -...+-|.++|++|.|||-||++|+++.... |+.|...
T Consensus 149 tY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At-------FIrvvgS-- 219 (406)
T COG1222 149 TYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT-------FIRVVGS-- 219 (406)
T ss_pred ChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCce-------EEEeccH--
Confidence 34456678888888877764 1346678899999999999999999987543 4544432
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--c-------ccc-ccccCCCCcCCCCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--L-------DKI-GIPYGDVDEKDKNDD 294 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~-------~~l-~~~~~~~~~~~~~~~ 294 (724)
++.+.. +|. .......+++.-+...++.|++|.++.... . .++ +..+.-+.+.+.+..
T Consensus 220 --ElVqKY---iGE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 220 --ELVQKY---IGE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred --HHHHHH---hcc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 222222 221 233556666666667899999999965411 0 000 011112233455556
Q ss_pred CCCcEEEEEecccchhhh----hcCCCceEecCCCCHHHH-HHHHHHHhCCCCCCCCchhHHHHHHHHhCCch----hHH
Q 004895 295 PRRCTIILTSRSRDLLCI----DMNSQKMFWIDALSEEEA-LQLFEKIVGESTKASDFRPLAEEIVGKCGGLP----VAL 365 (724)
Q Consensus 295 ~~~s~ilvTtR~~~v~~~----~~~~~~~~~l~~L~~~e~-~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP----Lai 365 (724)
....|||..|-..++... ...-...++++ +...++ .++|+=++..-.-..+. -.+.|++.|.|.- -|+
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfp-lPd~~gR~~Il~IHtrkM~l~~dv--d~e~la~~~~g~sGAdlkai 364 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFP-LPDEEGRAEILKIHTRKMNLADDV--DLELLARLTEGFSGADLKAI 364 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecC-CCCHHHHHHHHHHHhhhccCccCc--CHHHHHHhcCCCchHHHHHH
Confidence 677899999988776411 11223456666 555554 45666665432222211 1456777777654 344
Q ss_pred HHHHHHhc---CC---CHHHHHHHHHH
Q 004895 366 STVANALK---NK---SPAIWKDALNK 386 (724)
Q Consensus 366 ~~~~~~l~---~~---~~~~w~~~~~~ 386 (724)
.+=|++++ .+ +.+.+..+.++
T Consensus 365 ctEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 365 CTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 55555554 11 45555555554
No 129
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.04 E-value=6.1e-05 Score=88.68 Aligned_cols=180 Identities=17% Similarity=0.230 Sum_probs=102.5
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCC----CeEEEEEEecCCChHHHHHHHHH
Q 004895 159 YNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVF----DKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
..+++||+++++++++.|......-+.++|++|+|||++|+.++......... +..+|. + +...+ +.
T Consensus 178 ~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l----~a 248 (821)
T CHL00095 178 LDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL----LA 248 (821)
T ss_pred CCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH----hc
Confidence 45688999999999999986555566799999999999999999987532111 234442 1 11111 11
Q ss_pred hhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc---------ccccccccCCCCcCCCCCCCCCcEEEEEec
Q 004895 235 DLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE---------LDKIGIPYGDVDEKDKNDDPRRCTIILTSR 305 (724)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 305 (724)
+.+... . .++....+.+.+...++.+|++|++..... ...+..|.- ....-++|.+|.
T Consensus 249 --g~~~~g-e-~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l---------~rg~l~~IgaTt 315 (821)
T CHL00095 249 --GTKYRG-E-FEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPAL---------ARGELQCIGATT 315 (821)
T ss_pred --cCCCcc-H-HHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHH---------hCCCcEEEEeCC
Confidence 111111 1 233455555555555789999999964321 111111111 122344555555
Q ss_pred ccchh------hhhcCCCceEecCCCCHHHHHHHHHHHhC---CCCCCCCchhHHHHHHHHhCC
Q 004895 306 SRDLL------CIDMNSQKMFWIDALSEEEALQLFEKIVG---ESTKASDFRPLAEEIVGKCGG 360 (724)
Q Consensus 306 ~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~---~~~~~~~l~~~~~~I~~~c~G 360 (724)
..... .........+.++..+.++...+++.... ......--++....+++.++|
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~ 379 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ 379 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence 43321 11123446788999999999888876432 111111124556666666654
No 130
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=2.7e-06 Score=96.62 Aligned_cols=147 Identities=20% Similarity=0.269 Sum_probs=99.3
Q ss_pred ccCceEEeccCCCc--ccCCCc--ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCc
Q 004895 526 QKGPIAISLPYRDI--QELPER--LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQ 601 (724)
Q Consensus 526 ~~~~~~l~l~~~~~--~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~ 601 (724)
..++++|.+++... ...+.. .-+|.|++|.+.+..-...+ ....+.++++|+.||+|+++++.+ ..|++|++|+
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq 198 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQ 198 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHH
Confidence 46788888876433 122222 25899999999432221222 234567899999999999999988 7899999999
Q ss_pred EEEcCCcccCC---cccccCCCCCcEEEccCCcCcccchh-------hhcCCCCCeEccCCCCCCcccChHHhhCCCCCc
Q 004895 602 TLCLDGWRLED---IAIVGQLKKLEILSLRGAEIKQLPLQ-------IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLE 671 (724)
Q Consensus 602 ~L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~i~~lp~~-------i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~ 671 (724)
.|.+++-.+.. +..+.+|++|++||+|......-|.. -..|++||.|+.+++..-..+....+..-++|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~ 278 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQ 278 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHh
Confidence 99998887765 46788999999999999754433321 234889999998874322222223334444554
Q ss_pred EEE
Q 004895 672 ELY 674 (724)
Q Consensus 672 ~L~ 674 (724)
.+.
T Consensus 279 ~i~ 281 (699)
T KOG3665|consen 279 QIA 281 (699)
T ss_pred hhh
Confidence 443
No 131
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.02 E-value=2.6e-05 Score=82.64 Aligned_cols=108 Identities=18% Similarity=0.189 Sum_probs=72.2
Q ss_pred ccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH-hhCC
Q 004895 160 NIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS-DLGM 238 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~-~l~~ 238 (724)
...++.+..++.+...|... +.+.++|++|+|||++|+.+++.......|+.+.||++++..+..+++..+.- ..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy 252 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGF 252 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCe
Confidence 34567788889998888643 46778999999999999999998876667888999999998887766543211 1111
Q ss_pred CCCCCchhHHHHHHHHHHHh-cCCcEEEEEcccccc
Q 004895 239 NFDSNDLIYHRAKQLCQRLK-KEKRVLIILDNIWTK 273 (724)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 273 (724)
...... ....+..... .+++++||+|++...
T Consensus 253 ~~~~G~----f~~~~~~A~~~p~~~~vliIDEINRa 284 (459)
T PRK11331 253 RRKDGI----FYNFCQQAKEQPEKKYVFIIDEINRA 284 (459)
T ss_pred EecCch----HHHHHHHHHhcccCCcEEEEehhhcc
Confidence 111110 1111122211 146799999999654
No 132
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.01 E-value=7.1e-05 Score=81.47 Aligned_cols=168 Identities=13% Similarity=0.086 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK 261 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 261 (724)
.-+.|+|..|+|||+|++.+++.......-..+++++. .++...+...++... .....+.+.+. +
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~------~~f~~~~~~~l~~~~-------~~~~~~~~~~~--~ 206 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG------DEFARKAVDILQKTH-------KEIEQFKNEIC--Q 206 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHHHhh-------hHHHHHHHHhc--c
Confidence 45889999999999999999997654322233555543 456667666654210 12233444443 3
Q ss_pred cEEEEEccccccc---cc-cccccccCCCCcCCCCCCCCCcEEEEEecccchh--------hhhcCCCceEecCCCCHHH
Q 004895 262 RVLIILDNIWTKL---EL-DKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL--------CIDMNSQKMFWIDALSEEE 329 (724)
Q Consensus 262 r~LlVlDdv~~~~---~~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~e 329 (724)
.-+||+||+.... .+ +.+...+... ...+..||+|+...... .......-.+.+++++.++
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~-------~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~ 279 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNF-------IENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKT 279 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHH-------HHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHH
Confidence 4589999996542 11 2221111110 22344688887654311 1113334578899999999
Q ss_pred HHHHHHHHhCCCCC-CCCchhHHHHHHHHhCCchhHHHHHHHH
Q 004895 330 ALQLFEKIVGESTK-ASDFRPLAEEIVGKCGGLPVALSTVANA 371 (724)
Q Consensus 330 ~~~Lf~~~~~~~~~-~~~l~~~~~~I~~~c~GlPLai~~~~~~ 371 (724)
-.+++.+++..... ..--+++..-|++.++|.|-.+.-+...
T Consensus 280 r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 280 ATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 99999998853221 1223678899999999999877655443
No 133
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.97 E-value=0.00021 Score=79.92 Aligned_cols=195 Identities=16% Similarity=0.168 Sum_probs=108.0
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|.+...+.|..++..++. ..+.++|+.|+||||+|+.+++..-.....+. ..++.-...+.|..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~-------~pC~~C~~C~~i~~ 84 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG-------EPCNECEICKAITN 84 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 44567789999999999999876554 45678999999999999999887542211000 01111111112211
Q ss_pred hhCCCC---CC-CchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEE-EE
Q 004895 235 DLGMNF---DS-NDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTII-LT 303 (724)
Q Consensus 235 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il-vT 303 (724)
....+. +. .....+....+..... .++.-++|+|++.... .++.+...+.. ....+.+| .|
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe--------pp~~~ifIlat 156 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE--------PPAHVIFILAT 156 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC--------CCCCeEEEEEe
Confidence 111000 00 0001112222332221 2456789999997542 33333222222 22334444 44
Q ss_pred ecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHH
Q 004895 304 SRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 304 tR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 366 (724)
|....+...-......+++.+++.++....+...+......-+ .+.+..|++.++|.+.-+.
T Consensus 157 t~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~-~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 157 TEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYE-DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 4444333222334567889999999999999887753221111 4567889999999876443
No 134
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=0.00024 Score=80.22 Aligned_cols=199 Identities=13% Similarity=0.155 Sum_probs=110.2
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
+.....++|.+.....|..++..++. ..+.++|+.|+||||+|+.+++..-...... .. ...++.-+..+.+..
T Consensus 12 P~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~-~~----~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 12 PQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDK-PT----PEPCGKCELCRAIAA 86 (620)
T ss_pred CCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCC-CC----CCCCcccHHHHHHhc
Confidence 34456778999999999988876553 5778999999999999999999874321110 00 011111122222322
Q ss_pred hhCCCC---CC-CchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEe
Q 004895 235 DLGMNF---DS-NDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTS 304 (724)
Q Consensus 235 ~l~~~~---~~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 304 (724)
....+. .. .....+.+..+.+... .+++-++|+|++.... .++.+...+.. ....+.+|++|
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe--------Pp~~tvfIL~t 158 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE--------PPPRVVFVLAT 158 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc--------CCcCeEEEEEe
Confidence 211110 00 0001112222222221 2456799999997652 34444322222 22344444444
Q ss_pred cc-cchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 305 RS-RDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 305 R~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
.+ ..+...-......+++..++.++....+.+.+......- -.+.+..|++.++|.+..+...
T Consensus 159 ~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~i-s~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 159 TDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEI-EPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHH
Confidence 33 333222233456788999999998888887765322111 1356889999999988655433
No 135
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00026 Score=78.93 Aligned_cols=196 Identities=15% Similarity=0.165 Sum_probs=108.5
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|.+..+..|..++..++.. .+.++|+.|+||||+|+.+++..-....... ..+....+ .+.|..
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~----C~~i~~ 84 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSS----CKSIDN 84 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchH----HHHHHc
Confidence 444667889999999999998766554 5789999999999999999987643211100 00000000 011111
Q ss_pred hhCCC---CCCC-chhHHHHHHHHHHH----hcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEe
Q 004895 235 DLGMN---FDSN-DLIYHRAKQLCQRL----KKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTS 304 (724)
Q Consensus 235 ~l~~~---~~~~-~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 304 (724)
.-... .+.. ....+.+..+.+.+ ..+++-++|+|++.... .++.+...+.. ....+.+|++|
T Consensus 85 ~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe--------pp~~~vfI~~t 156 (563)
T PRK06647 85 DNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE--------PPPYIVFIFAT 156 (563)
T ss_pred CCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc--------CCCCEEEEEec
Confidence 00000 0000 00111112222111 12456789999986553 34444333322 33455555555
Q ss_pred cc-cchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHH
Q 004895 305 RS-RDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALST 367 (724)
Q Consensus 305 R~-~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 367 (724)
.. ..+...-......+++.+++.++....+.+.+...... --++.+..|++.++|.+..+..
T Consensus 157 te~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~-id~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 157 TEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK-YEDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred CChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHH
Confidence 33 33322223345678999999999999888876432211 1256778899999998854433
No 136
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.95 E-value=0.0026 Score=62.33 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=105.0
Q ss_pred CcccccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALK-----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQG 230 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 230 (724)
|.....|+|.++.++++.=.+. +...--+.++|++|.||||||.-+++...++ + -++......-.
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn--~----k~tsGp~leK~---- 91 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVN--L----KITSGPALEKP---- 91 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCC--e----EecccccccCh----
Confidence 5567889999998888765554 4567789999999999999999999998764 1 11111110000
Q ss_pred HHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc---------ccccccccCCCCcCCCCCCCCC----
Q 004895 231 ELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE---------LDKIGIPYGDVDEKDKNDDPRR---- 297 (724)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~---- 297 (724)
. ....+...|. ..=++++|.+..... .+++.... .-+.+++
T Consensus 92 ----------------g-DlaaiLt~Le--~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI-------~IG~gp~Arsv 145 (332)
T COG2255 92 ----------------G-DLAAILTNLE--EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDI-------IIGKGPAARSI 145 (332)
T ss_pred ----------------h-hHHHHHhcCC--cCCeEEEehhhhcChhHHHHhhhhhhheeEEE-------EEccCCccceE
Confidence 0 1112222222 234566676644310 11110000 0001222
Q ss_pred -------cEEEEEecccchh-hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHH
Q 004895 298 -------CTIILTSRSRDLL-CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVA 369 (724)
Q Consensus 298 -------s~ilvTtR~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 369 (724)
+-|=.|||.-.+. +......-+.+++..+.+|-.++..+.+..-.- .--++-+.+|+++..|-|.-..-+-
T Consensus 146 ~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i-~i~~~~a~eIA~rSRGTPRIAnRLL 224 (332)
T COG2255 146 RLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI-EIDEEAALEIARRSRGTPRIANRLL 224 (332)
T ss_pred eccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC-CCChHHHHHHHHhccCCcHHHHHHH
Confidence 2355788876543 222233457789999999999999988742111 1114678999999999997655443
Q ss_pred HH
Q 004895 370 NA 371 (724)
Q Consensus 370 ~~ 371 (724)
+.
T Consensus 225 rR 226 (332)
T COG2255 225 RR 226 (332)
T ss_pred HH
Confidence 33
No 137
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.94 E-value=9.9e-06 Score=56.54 Aligned_cols=37 Identities=35% Similarity=0.522 Sum_probs=16.7
Q ss_pred CceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC
Q 004895 576 ELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED 612 (724)
Q Consensus 576 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~ 612 (724)
+|++|++++|+|+.+|..+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 3444555555555444444444444444444444443
No 138
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=5.5e-07 Score=87.43 Aligned_cols=58 Identities=24% Similarity=0.254 Sum_probs=26.5
Q ss_pred CCCCCcEEEccCC-cCc-ccchhhhcCCCCCeEccCCCCCCcccChHH---hhCCCCCcEEEccCC
Q 004895 618 QLKKLEILSLRGA-EIK-QLPLQIGQLTRLQLLDLSNCSSLVVIAPNV---ISKLSRLEELYMGDS 678 (724)
Q Consensus 618 ~l~~L~~L~l~~~-~i~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~---i~~l~~L~~L~l~~~ 678 (724)
.+++|-+|||+.| .++ .+-..+.+++.|+||.++.|.. ++|+. +...++|.+|++.+|
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~---i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD---IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC---CChHHeeeeccCcceEEEEeccc
Confidence 4455555555554 333 3333445555555555555432 22221 234455555555443
No 139
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.93 E-value=0.00012 Score=78.19 Aligned_cols=179 Identities=15% Similarity=0.209 Sum_probs=98.8
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 158 DYNIFNSRKKIFQDVIEALK----D---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
....+.|-+..+++|.+.+. . ...+-+.++|++|+|||++|+.+++.... .| +.+..
T Consensus 143 ~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~--~f-----i~i~~--- 212 (398)
T PTZ00454 143 TYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA--TF-----IRVVG--- 212 (398)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--CE-----EEEeh---
Confidence 34557788887777766543 1 23567889999999999999999987642 12 22221
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc------------ccc-cccccCCCCcCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE------------LDK-IGIPYGDVDEKDK 291 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------------~~~-l~~~~~~~~~~~~ 291 (724)
.++.... ++ . .......++.......+.+|++|+++.... ... +...+. ..+.
T Consensus 213 -s~l~~k~---~g-----e--~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~---~ld~ 278 (398)
T PTZ00454 213 -SEFVQKY---LG-----E--GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLN---QMDG 278 (398)
T ss_pred -HHHHHHh---cc-----h--hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHH---Hhhc
Confidence 1111111 11 0 112334444444456789999999864310 000 000000 0111
Q ss_pred CCCCCCcEEEEEecccchhhhh-c---CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 292 NDDPRRCTIILTSRSRDLLCID-M---NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
.....+..||+||......... . .....+.++..+.++-.++|+.........++. ...++++.+.|+-
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dv--d~~~la~~t~g~s 351 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEV--DLEDFVSRPEKIS 351 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCccc--CHHHHHHHcCCCC
Confidence 1133466788888765532111 1 223568888888998888888776432222221 2456677776654
No 140
>CHL00181 cbbX CbbX; Provisional
Probab=97.92 E-value=0.00023 Score=72.76 Aligned_cols=133 Identities=14% Similarity=0.216 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK 261 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 261 (724)
..+.++|++|+||||+|+.+++.......-...-|+.++. .++.... .+.. . .....+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~l~~~~---~g~~------~-~~~~~~l~~---a~ 122 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DDLVGQY---IGHT------A-PKTKEVLKK---AM 122 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HHHHHHH---hccc------h-HHHHHHHHH---cc
Confidence 3578899999999999999998765322211122454442 2222221 1110 0 111222222 23
Q ss_pred cEEEEEccccccc------cc-----cccccccCCCCcCCCCCCCCCcEEEEEecccchh-------hhhcCCCceEecC
Q 004895 262 RVLIILDNIWTKL------EL-----DKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL-------CIDMNSQKMFWID 323 (724)
Q Consensus 262 r~LlVlDdv~~~~------~~-----~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-------~~~~~~~~~~~l~ 323 (724)
.-+|++|++.... ++ +.+...+.. .....+||+++...... .........++++
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~--------~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~ 194 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN--------QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFP 194 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhc--------CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcC
Confidence 3599999996421 11 112122222 33456677777543321 1111234578999
Q ss_pred CCCHHHHHHHHHHHhC
Q 004895 324 ALSEEEALQLFEKIVG 339 (724)
Q Consensus 324 ~L~~~e~~~Lf~~~~~ 339 (724)
+++.+|..+++...+.
T Consensus 195 ~~t~~el~~I~~~~l~ 210 (287)
T CHL00181 195 DYTPEELLQIAKIMLE 210 (287)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999988874
No 141
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=2.6e-06 Score=92.72 Aligned_cols=104 Identities=31% Similarity=0.415 Sum_probs=47.7
Q ss_pred cCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccC
Q 004895 572 EGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLS 651 (724)
Q Consensus 572 ~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~ 651 (724)
..+++|..|++.+|.+..+...+..+.+|++|+|++|.|+.+..+..+..|+.|++++|.|+.++ ++..+++|+.++++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence 33444555555555554443334445555555555555555444445555555555555444432 23334555555555
Q ss_pred CCCCCcccCh-HHhhCCCCCcEEEccCC
Q 004895 652 NCSSLVVIAP-NVISKLSRLEELYMGDS 678 (724)
Q Consensus 652 ~~~~l~~~~~-~~i~~l~~L~~L~l~~~ 678 (724)
+| .+..+.+ . +..+.+|+.+++.+|
T Consensus 171 ~n-~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 171 YN-RIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred cc-hhhhhhhhh-hhhccchHHHhccCC
Confidence 42 2222222 1 244444444444443
No 142
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00022 Score=80.21 Aligned_cols=201 Identities=13% Similarity=0.182 Sum_probs=109.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|.+.....|..++..++.. .+.++|+.|+||||+|+.+++..-.....+. ..++.-.....|..
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~~ 84 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEITE 84 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHhc
Confidence 444677889999999999988876654 5689999999999999999987642211100 00000011111111
Q ss_pred hhCCC---CCCC-chhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEE-EE
Q 004895 235 DLGMN---FDSN-DLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTII-LT 303 (724)
Q Consensus 235 ~l~~~---~~~~-~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il-vT 303 (724)
.-..+ .+.. ....+....+...+. .+++-++|+|++.... ..+.+...+.. ....+.+| +|
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe--------pp~~~~fIl~t 156 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE--------PPPHVKFIFAT 156 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc--------CCCCeEEEEEe
Confidence 00000 0000 000111222222221 2455689999996543 23333222222 22344555 45
Q ss_pred ecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch-hHHHHHHHHh
Q 004895 304 SRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP-VALSTVANAL 372 (724)
Q Consensus 304 tR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~~~l 372 (724)
|....+...-......+++.+++.++....+...+......- -.+....|++.++|.. .|+..+-..+
T Consensus 157 ~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i-~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 157 TEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISI-SDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred CChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444322233456888999999999888887664322111 1456788999999966 4555544433
No 143
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.87 E-value=9.9e-05 Score=75.47 Aligned_cols=132 Identities=15% Similarity=0.223 Sum_probs=71.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCc
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKR 262 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr 262 (724)
-+.++|++|+||||+|+.+++..........--|+.++. .++...+ .+. . . .....+.+. -..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~l~~~~---~g~-----~-~-~~~~~~~~~---a~~ 122 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DDLVGQY---IGH-----T-A-PKTKEILKR---AMG 122 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HHHhHhh---ccc-----c-h-HHHHHHHHH---ccC
Confidence 578999999999999999988775432222112444442 1222111 111 1 1 112222222 234
Q ss_pred EEEEEcccccc------cc-----ccccccccCCCCcCCCCCCCCCcEEEEEecccchhhh-------hcCCCceEecCC
Q 004895 263 VLIILDNIWTK------LE-----LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCI-------DMNSQKMFWIDA 324 (724)
Q Consensus 263 ~LlVlDdv~~~------~~-----~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~-------~~~~~~~~~l~~ 324 (724)
-+|+||++... .. ++.+...+.. ...+.+||+++........ .......+++++
T Consensus 123 gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~--------~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~ 194 (284)
T TIGR02880 123 GVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN--------QRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPD 194 (284)
T ss_pred cEEEEechhhhccCCCccchHHHHHHHHHHHHhc--------CCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCC
Confidence 68999999632 01 1222222222 3345667776654322100 011235789999
Q ss_pred CCHHHHHHHHHHHhC
Q 004895 325 LSEEEALQLFEKIVG 339 (724)
Q Consensus 325 L~~~e~~~Lf~~~~~ 339 (724)
++.+|..+++.+.+.
T Consensus 195 l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 195 YSEAELLVIAGLMLK 209 (284)
T ss_pred cCHHHHHHHHHHHHH
Confidence 999999999988764
No 144
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.87 E-value=0.00033 Score=76.44 Aligned_cols=164 Identities=15% Similarity=0.213 Sum_probs=91.5
Q ss_pred cccccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccC---CCeEEEEEEe
Q 004895 157 KDYNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV---FDKVVMAEIT 220 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F~~~~wv~vs 220 (724)
.....+.|.+..++++.+.+. -...+-+.++|++|+|||++|+.+++....... .....|++++
T Consensus 179 v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 179 VTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred CCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 334566788888888877653 123456889999999999999999998753211 1234455544
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHH----hcCCcEEEEEcccccccc---------c-----cccccc
Q 004895 221 KNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRL----KKEKRVLIILDNIWTKLE---------L-----DKIGIP 282 (724)
Q Consensus 221 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l----~~~kr~LlVlDdv~~~~~---------~-----~~l~~~ 282 (724)
.. +++.. ...+ .......+++.. ..+++++|+||+++.... . ..+...
T Consensus 259 ~~----eLl~k--------yvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 259 GP----ELLNK--------YVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred ch----hhccc--------ccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 32 11111 0000 111222222222 235789999999975311 0 111111
Q ss_pred cCCCCcCCCCCCCCCcEEEEEecccchhhhh-c---CCCceEecCCCCHHHHHHHHHHHhCC
Q 004895 283 YGDVDEKDKNDDPRRCTIILTSRSRDLLCID-M---NSQKMFWIDALSEEEALQLFEKIVGE 340 (724)
Q Consensus 283 ~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~ 340 (724)
+ +......+..||.||......... . .....++++..+.++..++|+++...
T Consensus 325 L------Dgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 325 L------DGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred h------cccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 1 111122345566666554432111 1 22346899999999999999998743
No 145
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.85 E-value=0.00032 Score=75.45 Aligned_cols=179 Identities=17% Similarity=0.195 Sum_probs=98.8
Q ss_pred ccccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 158 DYNIFNSRKKIFQDVIEALK----D---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
....+.|.+..+++|.+.+. . ....-+.++|++|+|||++|+.+++.... .| +.+...
T Consensus 181 ~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--~f-----i~V~~s-- 251 (438)
T PTZ00361 181 SYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--TF-----LRVVGS-- 251 (438)
T ss_pred CHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC--CE-----EEEecc--
Confidence 34556788888888877653 1 23456889999999999999999997643 22 222211
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccc-------------cccccccCCCCcCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLEL-------------DKIGIPYGDVDEKDK 291 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~-------------~~l~~~~~~~~~~~~ 291 (724)
++.... ++ . .......++.......+.+|+||+++....- ..+...+. ..+.
T Consensus 252 --eL~~k~---~G-----e--~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~---~Ldg 316 (438)
T PTZ00361 252 --ELIQKY---LG-----D--GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLN---QLDG 316 (438)
T ss_pred --hhhhhh---cc-----h--HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHH---HHhh
Confidence 111110 11 0 1122334444444457899999998643110 00000000 0011
Q ss_pred CCCCCCcEEEEEecccchhhhh-c---CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 292 NDDPRRCTIILTSRSRDLLCID-M---NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
.....+.+||+||......... . .....++++..+.++-.++|..++......++. ....++..+.|+-
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dv--dl~~la~~t~g~s 389 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDV--DLEEFIMAKDELS 389 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCc--CHHHHHHhcCCCC
Confidence 1123456788888765543111 1 223578899999999999999876533222211 2345666665544
No 146
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.84 E-value=1.9e-05 Score=72.93 Aligned_cols=75 Identities=27% Similarity=0.348 Sum_probs=34.1
Q ss_pred ceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCc-ccc-cCCCCCcEEEccCCcCcccc--hhhhcCCCCCeEccCC
Q 004895 577 LKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDI-AIV-GQLKKLEILSLRGAEIKQLP--LQIGQLTRLQLLDLSN 652 (724)
Q Consensus 577 L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~-~~~-~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~ 652 (724)
...+||++|.+-.++ .+..+..|.+|.|.+|.|+.+ +.+ ..+++|.+|.+.+|+|.++- ..+..+++|++|.+-+
T Consensus 44 ~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLG 122 (233)
T ss_pred cceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecC
Confidence 444555555544332 234455555555555555442 222 23344555555555444331 1234444555555444
No 147
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.81 E-value=0.00078 Score=69.68 Aligned_cols=195 Identities=15% Similarity=0.184 Sum_probs=111.3
Q ss_pred ccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc--------------cCCCeEEEEEEecCCC
Q 004895 160 NIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMED--------------NVFDKVVMAEITKNPD 224 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------~~F~~~~wv~vs~~~~ 224 (724)
..++|.+..++.+...+..++. ....++|+.|+||+++|..+++..-.. .|.| ..|+.-....+
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPD-l~~i~p~~~~~ 82 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPD-LLWVEPTYQHQ 82 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCC-EEEEecccccc
Confidence 4578999999999999887764 789999999999999999998876322 1222 23432110000
Q ss_pred hHHHHHHHHHhhCCCCC-CCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCC
Q 004895 225 AQKIQGELASDLGMNFD-SNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRR 297 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~ 297 (724)
-..+-...++..+.... ......+.+..+.+.+. .+++-++|+|+++... ..+.+...+.. .. .
T Consensus 83 g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE--------Pp-~ 153 (314)
T PRK07399 83 GKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE--------PG-N 153 (314)
T ss_pred ccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC--------CC-C
Confidence 00000111112221000 00111223344544443 2567799999986653 23333222222 22 3
Q ss_pred cEEEEEe-cccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 298 CTIILTS-RSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 298 s~ilvTt-R~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
+.+|++| ....+...-.+....+.+.++++++..+.+.+...... .......++..++|.|..+...
T Consensus 154 ~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~----~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 154 GTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI----LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred CeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc----chhHHHHHHHHcCCCHHHHHHH
Confidence 3445444 44444333345567999999999999999998743211 1112468899999999766543
No 148
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.81 E-value=0.00028 Score=76.82 Aligned_cols=161 Identities=14% Similarity=0.193 Sum_probs=95.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCC-eEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFD-KVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
..-+.|+|++|+|||+|++.+++..... +++ .++|++. .++..++...+... . ...+.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~-~~~~~v~yi~~------~~f~~~~~~~~~~~----~-----~~~f~~~~~- 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN-EPDLRVMYITS------EKFLNDLVDSMKEG----K-----LNEFREKYR- 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHh-CCCCeEEEEEH------HHHHHHHHHHHhcc----c-----HHHHHHHHH-
Confidence 3458999999999999999999987643 233 4677764 34556666555321 1 122333333
Q ss_pred CCcEEEEEcccccccc---c-cccccccCCCCcCCCCCCCCCcEEEEEecccc-hh-------hhhcCCCceEecCCCCH
Q 004895 260 EKRVLIILDNIWTKLE---L-DKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD-LL-------CIDMNSQKMFWIDALSE 327 (724)
Q Consensus 260 ~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~-------~~~~~~~~~~~l~~L~~ 327 (724)
.+.-+|++||+..... + +.+...+..+ ...+..||+||.... -. .........+++++.+.
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l-------~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~ 265 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNEL-------HDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDE 265 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHH-------HHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCH
Confidence 2346899999974311 1 1121111100 123446888885332 11 01123345788999999
Q ss_pred HHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHH
Q 004895 328 EEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 328 ~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 366 (724)
+.-.+++++.+...... --+++..-|++.+.|..-.+.
T Consensus 266 e~r~~IL~~~~~~~~~~-l~~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 266 ETRKKIARKMLEIEHGE-LPEEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHHHHHHHHhcCCC-CCHHHHHHHHhccccCHHHHH
Confidence 99999999887532111 125678888888887655443
No 149
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.80 E-value=0.00039 Score=82.25 Aligned_cols=159 Identities=16% Similarity=0.260 Sum_probs=92.1
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCC----CeEEE-EEEecCCChHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVF----DKVVM-AEITKNPDAQKIQGE 231 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~w-v~vs~~~~~~~l~~~ 231 (724)
....+++||++++.++++.|......-+.++|++|+|||++|+.+++.......+ +..+| +.++ .+
T Consensus 170 ~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~------~l--- 240 (852)
T TIGR03346 170 GKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG------AL--- 240 (852)
T ss_pred CCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH------HH---
Confidence 3456789999999999999876665667799999999999999999886432111 22233 2211 11
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcccccccc---------ccccccccCCCCcCCCCCCCCCcEEE
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKK-EKRVLIILDNIWTKLE---------LDKIGIPYGDVDEKDKNDDPRRCTII 301 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~s~il 301 (724)
+. +..... . .......+...+.. +++.+|++|++..... ...+..+.. ....-++|
T Consensus 241 -~a--~~~~~g-~-~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l---------~~g~i~~I 306 (852)
T TIGR03346 241 -IA--GAKYRG-E-FEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL---------ARGELHCI 306 (852)
T ss_pred -hh--cchhhh-h-HHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh---------hcCceEEE
Confidence 10 101111 1 22334444444432 4689999999975421 011111111 12223455
Q ss_pred EEecccch------hhhhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 302 LTSRSRDL------LCIDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 302 vTtR~~~v------~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
.+|..... -.........+.++..+.++..++++...
T Consensus 307 gaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 307 GATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred EeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 44443322 01112344678899999999999998764
No 150
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.80 E-value=0.00025 Score=76.91 Aligned_cols=160 Identities=19% Similarity=0.195 Sum_probs=94.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKE 260 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 260 (724)
...+.|+|+.|+|||+|++.+++.......=..++|++. .++...+...+... . ...+.+.+.
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~------~~~~~~~~~~~~~~----~-----~~~~~~~~~-- 198 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS------EKFTNDFVNALRNN----K-----MEEFKEKYR-- 198 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH------HHHHHHHHHHHHcC----C-----HHHHHHHHH--
Confidence 356889999999999999999998765321123666653 34444555544321 1 123334443
Q ss_pred CcEEEEEcccccccc---c-cccccccCCCCcCCCCCCCCCcEEEEEecccchh--------hhhcCCCceEecCCCCHH
Q 004895 261 KRVLIILDNIWTKLE---L-DKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL--------CIDMNSQKMFWIDALSEE 328 (724)
Q Consensus 261 kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~ 328 (724)
+.-+|+|||+..... + +.+...+... ...+..+|+|+....-. .........+.+++.+.+
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~-------~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~ 271 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNAL-------HENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLE 271 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHH-------HHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHH
Confidence 234899999975421 1 1121111100 12345688887653211 111222347899999999
Q ss_pred HHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 329 EALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 329 e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
+-..++.+.+...... --+++...|++.+.|.+-.+
T Consensus 272 ~r~~il~~~~~~~~~~-l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 272 TRLAILQKKAEEEGLE-LPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCHHHH
Confidence 9999999988643211 12567788888888876544
No 151
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.79 E-value=3.4e-05 Score=53.86 Aligned_cols=32 Identities=41% Similarity=0.633 Sum_probs=14.8
Q ss_pred CCcEEEccCCcCcccchhhhcCCCCCeEccCC
Q 004895 621 KLEILSLRGAEIKQLPLQIGQLTRLQLLDLSN 652 (724)
Q Consensus 621 ~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~ 652 (724)
+|++|++++|.|+.+|+.+.+|++|+.|++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC
Confidence 34444444444444444444555555555544
No 152
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.77 E-value=0.00024 Score=78.02 Aligned_cols=161 Identities=18% Similarity=0.164 Sum_probs=95.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKE 260 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 260 (724)
..-+.|+|+.|+|||+|++.+++.......-..++|++.. ++...+...+... ....+.+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~------~~~~~~~~~~~~~---------~~~~~~~~~~-- 210 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSE------KFTNDFVNALRNN---------TMEEFKEKYR-- 210 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHH------HHHHHHHHHHHcC---------cHHHHHHHHh--
Confidence 3568899999999999999999998653212235666543 3344444444211 1123344444
Q ss_pred CcEEEEEcccccccc---c-cccccccCCCCcCCCCCCCCCcEEEEEecccchh--------hhhcCCCceEecCCCCHH
Q 004895 261 KRVLIILDNIWTKLE---L-DKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL--------CIDMNSQKMFWIDALSEE 328 (724)
Q Consensus 261 kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~~ 328 (724)
+.-+|||||+..... + +.+...+..+ ...+..||+||....-. .........+++++.+.+
T Consensus 211 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l-------~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKERTQEEFFHTFNAL-------HEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLE 283 (450)
T ss_pred cCCEEEEehhhhhcCCHHHHHHHHHHHHHH-------HHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHH
Confidence 345899999965321 1 1221111100 11244578887654211 111233457899999999
Q ss_pred HHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHH
Q 004895 329 EALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 329 e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 366 (724)
+-..++++.+..... .--+++..-|++.++|..-.+.
T Consensus 284 ~r~~il~~~~~~~~~-~l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 284 TRIAILKKKAEEEGI-DLPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHHHHHHcCC-CCCHHHHHHHHcCcCCCHHHHH
Confidence 999999998853211 1125678889999888776543
No 153
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00081 Score=69.99 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=89.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcc--------------------CCCeEEEEEEe---cCCChHHHHHHHHHhhC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDN--------------------VFDKVVMAEIT---KNPDAQKIQGELASDLG 237 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs---~~~~~~~l~~~i~~~l~ 237 (724)
...+.++|+.|+||||+|+.+++..--.. |.| ..|+.-. +...+
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD-~~~i~~~~~~~~i~i------------ 88 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPD-NFVLEPEEADKTIKV------------ 88 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccCCCCCCCH------------
Confidence 44678999999999999999998864321 122 1222111 11111
Q ss_pred CCCCCCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccc-hh
Q 004895 238 MNFDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD-LL 310 (724)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~ 310 (724)
+.+..+.+.+. .+++-++|+|+++... ..+.+...+.. ...++.+|+||.+.. +.
T Consensus 89 ----------d~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE--------Pp~~~~fiL~t~~~~~ll 150 (328)
T PRK05707 89 ----------DQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEE--------PSGDTVLLLISHQPSRLL 150 (328)
T ss_pred ----------HHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhC--------CCCCeEEEEEECChhhCc
Confidence 22223333321 2345566789997653 33333222322 334566777776654 33
Q ss_pred hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 311 CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 311 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
..-.+....+.+.+++.+++.+.+....... ..+.+..++..++|.|+.+..+
T Consensus 151 ~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~-----~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 151 PTIKSRCQQQACPLPSNEESLQWLQQALPES-----DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhhceeeeCCCcCHHHHHHHHHHhcccC-----ChHHHHHHHHHcCCCHHHHHHH
Confidence 3324445789999999999999888764211 1344667899999999765443
No 154
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.75 E-value=1.5e-06 Score=93.96 Aligned_cols=107 Identities=26% Similarity=0.274 Sum_probs=63.6
Q ss_pred hcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCcccccCC-CCCcEEEccCCcCcccchhhhcCCCCCeEc
Q 004895 571 FEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQL-KKLEILSLRGAEIKQLPLQIGQLTRLQLLD 649 (724)
Q Consensus 571 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~~~~~~l-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~ 649 (724)
+.-++.|+.|+|++|++.+.- .+..|.+|++|+|++|.++..+.++.- .+|+.|++++|.++++ .+|.+|++|++|+
T Consensus 183 Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL-~gie~LksL~~LD 260 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTL-RGIENLKSLYGLD 260 (1096)
T ss_pred HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhh-hhHHhhhhhhccc
Confidence 444566667777777666553 566666777777777776664333321 1377777777776666 4566777777777
Q ss_pred cCCCCCCcc-cChHHhhCCCCCcEEEccCCCC
Q 004895 650 LSNCSSLVV-IAPNVISKLSRLEELYMGDSFS 680 (724)
Q Consensus 650 l~~~~~l~~-~~~~~i~~l~~L~~L~l~~~~~ 680 (724)
+++| .+.. ---..++.|..|..|++.+|..
T Consensus 261 lsyN-ll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 261 LSYN-LLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhHh-hhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 7663 2221 1112256666677777766643
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.73 E-value=0.00033 Score=82.56 Aligned_cols=159 Identities=16% Similarity=0.245 Sum_probs=91.2
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCC----Ce-EEEEEEecCCChHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVF----DK-VVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~-~~wv~vs~~~~~~~l~~~ 231 (724)
....+++||++++.++++.|......-+.++|++|+|||++|+.++......... +. +++++++. +
T Consensus 175 ~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~------l--- 245 (857)
T PRK10865 175 GKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L--- 245 (857)
T ss_pred CCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh------h---
Confidence 3456789999999999999876666677799999999999999999987432111 22 23333321 1
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHh-cCCcEEEEEcccccccc---------ccccccccCCCCcCCCCCCCCCcEEE
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLK-KEKRVLIILDNIWTKLE---------LDKIGIPYGDVDEKDKNDDPRRCTII 301 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~---------~~~l~~~~~~~~~~~~~~~~~~s~il 301 (724)
.. +...... .+.....+...+. .+++.+|++|++..... ...+..|.- ....-++|
T Consensus 246 -~a--g~~~~g~--~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l---------~~g~l~~I 311 (857)
T PRK10865 246 -VA--GAKYRGE--FEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---------ARGELHCV 311 (857)
T ss_pred -hh--ccchhhh--hHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh---------hcCCCeEE
Confidence 10 0011111 1223344444432 24679999999975421 111111211 22234555
Q ss_pred EEecccch------hhhhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 302 LTSRSRDL------LCIDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 302 vTtR~~~v------~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
-+|..... -.......+.+.+..-+.++...+++...
T Consensus 312 gaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 312 GATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred EcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 55554432 01112233466777779999999887654
No 156
>PRK06620 hypothetical protein; Validated
Probab=97.71 E-value=0.00017 Score=70.32 Aligned_cols=136 Identities=15% Similarity=0.039 Sum_probs=79.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK 261 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 261 (724)
+.+.|+|++|+|||+|++.+++.... .++. ..+. . . +.+. .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-------~~~~--~~~~-------------------~-~--------~~~~--~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-------YIIK--DIFF-------------------N-E--------EILE--K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-------EEcc--hhhh-------------------c-h--------hHHh--c
Confidence 56899999999999999987665421 1221 0000 0 0 0111 2
Q ss_pred cEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccchh------hhhcCCCceEecCCCCHHHHHHHHH
Q 004895 262 RVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL------CIDMNSQKMFWIDALSEEEALQLFE 335 (724)
Q Consensus 262 r~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~ 335 (724)
.-++++||+....+ ..+...+.. ....|..+|+|++..... .......-.++++++++++-..++.
T Consensus 86 ~d~lliDdi~~~~~-~~lf~l~N~-------~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~ 157 (214)
T PRK06620 86 YNAFIIEDIENWQE-PALLHIFNI-------INEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIF 157 (214)
T ss_pred CCEEEEeccccchH-HHHHHHHHH-------HHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHH
Confidence 35788999963321 011111100 023466899999865431 1122334589999999999888888
Q ss_pred HHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 336 KIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 336 ~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
+.+....- .--+++..-|++.+.|.--.+
T Consensus 158 k~~~~~~l-~l~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 158 KHFSISSV-TISRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HHHHHcCC-CCCHHHHHHHHHHccCCHHHH
Confidence 87653211 111567778888887765544
No 157
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.71 E-value=0.0013 Score=63.94 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=41.7
Q ss_pred CcccccccchHHHHHHHHHHh----cCCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 156 MKDYNIFNSRKKIFQDVIEAL----KDDKLNIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
+.....++|-+..++.|++-. ......-+.++|..|+|||++++.+.+....+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 445667889888888877643 34455677889999999999999999988764
No 158
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.70 E-value=7.4e-06 Score=89.11 Aligned_cols=79 Identities=30% Similarity=0.399 Sum_probs=37.0
Q ss_pred CCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCcccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccC
Q 004895 573 GTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLS 651 (724)
Q Consensus 573 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~ 651 (724)
.+.+|++|++++|.|..+. .+..+..|+.|++++|.++.+..+..+.+|+.+++++|.+..++.. +..+.+|+.+.+.
T Consensus 116 ~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~ 194 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLG 194 (414)
T ss_pred hhhcchheecccccccccc-chhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhcc
Confidence 3444555555555544442 2344444555555555554444444455555555555544444332 3444444444444
Q ss_pred C
Q 004895 652 N 652 (724)
Q Consensus 652 ~ 652 (724)
+
T Consensus 195 ~ 195 (414)
T KOG0531|consen 195 G 195 (414)
T ss_pred C
Confidence 4
No 159
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.69 E-value=0.00081 Score=74.84 Aligned_cols=180 Identities=14% Similarity=0.149 Sum_probs=95.5
Q ss_pred cccccccchHHHHHHHHHHh---cC---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 157 KDYNIFNSRKKIFQDVIEAL---KD---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
.....+.|-++.++++.+.+ .. ...+-+.++|++|+|||++|+.+++..... ++.++.
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-------~~~i~~--- 121 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISG--- 121 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------eeeccH---
Confidence 34456677776655554433 21 223458899999999999999999875321 233321
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccc------------ccc-ccccCCCCcCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLEL------------DKI-GIPYGDVDEKDK 291 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~------------~~l-~~~~~~~~~~~~ 291 (724)
.++.... .+. .......+++......+.+|+|||++....- ... ...+.. .+.
T Consensus 122 -~~~~~~~---~g~-------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~---~d~ 187 (495)
T TIGR01241 122 -SDFVEMF---VGV-------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVE---MDG 187 (495)
T ss_pred -HHHHHHH---hcc-------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhh---hcc
Confidence 1121111 010 1122334444444456799999999653110 000 000000 011
Q ss_pred CCCCCCcEEEEEecccchhhh----hcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 292 NDDPRRCTIILTSRSRDLLCI----DMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~~~v~~~----~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
.....+..||.||........ ...-...+.++..+.++-.++|+..+......+ ......+++.+.|.-
T Consensus 188 ~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~--~~~l~~la~~t~G~s 260 (495)
T TIGR01241 188 FGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP--DVDLKAVARRTPGFS 260 (495)
T ss_pred ccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc--chhHHHHHHhCCCCC
Confidence 113344556666755432111 112345788888898888899988775332222 123457888888743
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.65 E-value=7.3e-05 Score=85.91 Aligned_cols=158 Identities=19% Similarity=0.273 Sum_probs=93.0
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhcc-C---CCeEEEEEEecCCChHHHHHHHHH
Q 004895 159 YNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDN-V---FDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
..+++||++++.++++.|......-+.++|++|+|||++|+.+++...... . .++.+|.. +... ++.
T Consensus 185 ~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~~----lla 255 (758)
T PRK11034 185 IDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIGS----LLA 255 (758)
T ss_pred CCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHHH----Hhc
Confidence 456889999999999988765455667899999999999999998754321 1 13444421 1111 111
Q ss_pred hhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc----------cccccccccCCCCcCCCCCCCCCcEEEEEe
Q 004895 235 DLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL----------ELDKIGIPYGDVDEKDKNDDPRRCTIILTS 304 (724)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 304 (724)
+...... .+.....+...+.+.++.+|++|++.... +...+..++. ....-+||.+|
T Consensus 256 --G~~~~Ge--~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L---------~~g~i~vIgAT 322 (758)
T PRK11034 256 --GTKYRGD--FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL---------SSGKIRVIGST 322 (758)
T ss_pred --ccchhhh--HHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH---------hCCCeEEEecC
Confidence 1111111 22334455555554567899999997531 1111112221 22234455555
Q ss_pred cccchh------hhhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 305 RSRDLL------CIDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 305 R~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
...... .........+.+++.+.++..++++...
T Consensus 323 t~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 443320 1112334689999999999999998765
No 161
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.65 E-value=0.00052 Score=73.58 Aligned_cols=166 Identities=23% Similarity=0.260 Sum_probs=96.5
Q ss_pred chHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCC
Q 004895 164 SRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSN 243 (724)
Q Consensus 164 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~ 243 (724)
.|.+...++++.+..... ++.|.|+-++||||+++.+....... .++++.-+......-+.+..
T Consensus 21 ~~~~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~---------- 84 (398)
T COG1373 21 ERRKLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLL---------- 84 (398)
T ss_pred hHHhhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHH----------
Confidence 344556666666543333 99999999999999997766655432 55555433211111101111
Q ss_pred chhHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccchh-----hhhcCCCc
Q 004895 244 DLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL-----CIDMNSQK 318 (724)
Q Consensus 244 ~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-----~~~~~~~~ 318 (724)
...... ...++..++||.|.....|......+.+ ..+. +|++|+-+.... ....+...
T Consensus 85 -------~~~~~~-~~~~~~yifLDEIq~v~~W~~~lk~l~d--------~~~~-~v~itgsss~ll~~~~~~~L~GR~~ 147 (398)
T COG1373 85 -------RAYIEL-KEREKSYIFLDEIQNVPDWERALKYLYD--------RGNL-DVLITGSSSSLLSKEISESLAGRGK 147 (398)
T ss_pred -------HHHHHh-hccCCceEEEecccCchhHHHHHHHHHc--------cccc-eEEEECCchhhhccchhhhcCCCce
Confidence 111111 1125689999999999999877566555 3344 788888876643 22234467
Q ss_pred eEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHH
Q 004895 319 MFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALST 367 (724)
Q Consensus 319 ~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 367 (724)
.+++.|||..|...+-...+ ..... +..-+-.-.+||.|-++..
T Consensus 148 ~~~l~PlSF~Efl~~~~~~~----~~~~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 148 DLELYPLSFREFLKLKGEEI----EPSKL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred eEEECCCCHHHHHhhccccc----chhHH-HHHHHHHHHhCCCcHHHhC
Confidence 89999999999766533000 00011 1122223357899987654
No 162
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.65 E-value=0.00088 Score=74.20 Aligned_cols=159 Identities=14% Similarity=0.125 Sum_probs=93.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK 261 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 261 (724)
..+.|+|..|+|||.|++.+++.......--.++|++. .++..++...+... ....+.+.+. +
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~---------~~~~f~~~y~--~ 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG---------KGDSFRRRYR--E 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc---------cHHHHHHHhh--c
Confidence 45899999999999999999998754211123566654 34444554443211 1222333443 2
Q ss_pred cEEEEEccccccc---ccc-ccccccCCCCcCCCCCCCCCcEEEEEecccch--------hhhhcCCCceEecCCCCHHH
Q 004895 262 RVLIILDNIWTKL---ELD-KIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL--------LCIDMNSQKMFWIDALSEEE 329 (724)
Q Consensus 262 r~LlVlDdv~~~~---~~~-~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v--------~~~~~~~~~~~~l~~L~~~e 329 (724)
-=+|||||+.... .|+ .+...+..+ ...+..|||||+...- ........-.+++.+.+.+.
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l-------~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~Et 450 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTL-------HNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELET 450 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHH-------HhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHH
Confidence 3589999996542 222 121111110 2234568888886421 01223445688999999999
Q ss_pred HHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 330 ALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 330 ~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
-.+++++++....-. --++++.-|++.+.+..-.+
T Consensus 451 R~aIL~kka~~r~l~-l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 451 RIAILRKKAVQEQLN-APPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHHHHHHhcCCC-CCHHHHHHHHHhccCCHHHH
Confidence 999999987533211 11567777777776654433
No 163
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.57 E-value=0.00016 Score=64.73 Aligned_cols=69 Identities=20% Similarity=0.256 Sum_probs=41.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC-c
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK-R 262 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k-r 262 (724)
|.|+|++|+||||+|+.+++..... ++.++.+...+. .... .......+.+...... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~-----~~~i~~~~~~~~---------------~~~~-~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP-----FIEIDGSELISS---------------YAGD-SEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE-----EEEEETTHHHTS---------------STTH-HHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc-----cccccccccccc---------------cccc-cccccccccccccccccc
Confidence 5799999999999999999987421 344443321100 0011 2223334444443333 7
Q ss_pred EEEEEcccccc
Q 004895 263 VLIILDNIWTK 273 (724)
Q Consensus 263 ~LlVlDdv~~~ 273 (724)
.+|++||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999654
No 164
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.55 E-value=0.0051 Score=59.62 Aligned_cols=194 Identities=19% Similarity=0.244 Sum_probs=109.9
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEe-cCCChHHHHHHHHHhhCCCCCCC--ch
Q 004895 169 FQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEIT-KNPDAQKIQGELASDLGMNFDSN--DL 245 (724)
Q Consensus 169 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~l~~~i~~~l~~~~~~~--~~ 245 (724)
+..+...+ ..+.+++.++|.-|.|||++.+........ +.++-+.+. ...+...+...|+..+..+.... ..
T Consensus 40 l~~l~~~i-~d~qg~~~vtGevGsGKTv~~Ral~~s~~~----d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~ 114 (269)
T COG3267 40 LLMLHAAI-ADGQGILAVTGEVGSGKTVLRRALLASLNE----DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAV 114 (269)
T ss_pred HHHHHHHH-hcCCceEEEEecCCCchhHHHHHHHHhcCC----CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHH
Confidence 33443333 445579999999999999999955443332 122223333 33566778888888887632211 11
Q ss_pred hHHHHHHHHHHHhcCCc-EEEEEcccccc--ccccccccccCCCCcCCCCCCCCCcEEEEEecccc--------hhhhhc
Q 004895 246 IYHRAKQLCQRLKKEKR-VLIILDNIWTK--LELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD--------LLCIDM 314 (724)
Q Consensus 246 ~~~~~~~l~~~l~~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~--------v~~~~~ 314 (724)
.......+.....+++| ..+++||.... +.++.++..... .. ....--+|+..-..+- ......
T Consensus 115 ~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl----~~-~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~ 189 (269)
T COG3267 115 LEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNL----EE-DSSKLLSIVLIGQPKLRPRLRLPVLRELEQ 189 (269)
T ss_pred HHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhh----cc-cccCceeeeecCCcccchhhchHHHHhhhh
Confidence 22233444555556777 99999998654 222222111100 00 0111112332222111 101111
Q ss_pred CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCc--hhHHHHHHHHhCCchhHHHHHHHHh
Q 004895 315 NSQKMFWIDALSEEEALQLFEKIVGESTKASDF--RPLAEEIVGKCGGLPVALSTVANAL 372 (724)
Q Consensus 315 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l--~~~~~~I~~~c~GlPLai~~~~~~l 372 (724)
...-.|++.|++.++...+++.+......++++ .+....|.....|.|.+|..++...
T Consensus 190 R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~A 249 (269)
T COG3267 190 RIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLA 249 (269)
T ss_pred eEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHH
Confidence 122238999999999999999988644333332 4567889999999999998876543
No 165
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.54 E-value=0.00019 Score=75.33 Aligned_cols=83 Identities=17% Similarity=0.282 Sum_probs=52.0
Q ss_pred cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCC-cCCCCCccccCCCCCcEEEcCCc-ccCCcccccCCCCCcE
Q 004895 547 ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGI-RFSPLPSSLGRLINLQTLCLDGW-RLEDIAIVGQLKKLEI 624 (724)
Q Consensus 547 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~L~~~-~l~~~~~~~~l~~L~~ 624 (724)
.+.+++.|.+. .+....+|. + -.+|+.|.+++| .++.+|..+. .+|++|.+++| .+..++ .+|++
T Consensus 50 ~~~~l~~L~Is--~c~L~sLP~--L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP-----~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIK--DCDIESLPV--L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP-----ESVRS 116 (426)
T ss_pred HhcCCCEEEeC--CCCCcccCC--C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc-----cccce
Confidence 46788888883 224444441 1 246888898875 3456776553 57889999888 454421 34777
Q ss_pred EEccCCc---CcccchhhhcC
Q 004895 625 LSLRGAE---IKQLPLQIGQL 642 (724)
Q Consensus 625 L~l~~~~---i~~lp~~i~~l 642 (724)
|+++++. +..+|.++..|
T Consensus 117 L~L~~n~~~~L~~LPssLk~L 137 (426)
T PRK15386 117 LEIKGSATDSIKNVPNGLTSL 137 (426)
T ss_pred EEeCCCCCcccccCcchHhhe
Confidence 7777654 45677765544
No 166
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.54 E-value=0.0024 Score=68.76 Aligned_cols=181 Identities=17% Similarity=0.202 Sum_probs=100.1
Q ss_pred cccccchHHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChH
Q 004895 159 YNIFNSRKKIFQDVIEALK---D---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQ 226 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 226 (724)
...+-|-++.+.++.+.+. . ...+-|.++|++|+|||.||+.++.+..+- ++.++..
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-------f~~isAp---- 257 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-------FLSISAP---- 257 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-------eEeecch----
Confidence 4456688888888777653 1 235678899999999999999999988753 3444332
Q ss_pred HHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc---ccc-----c-c-ccccCCCCcCCCCC-CC
Q 004895 227 KIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL---ELD-----K-I-GIPYGDVDEKDKND-DP 295 (724)
Q Consensus 227 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~-----~-l-~~~~~~~~~~~~~~-~~ 295 (724)
+|+.... .+ .++.+..++..-.+.-++++++|+++... +|. . + ...+..++...... .+
T Consensus 258 ----eivSGvS----GE--SEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g 327 (802)
T KOG0733|consen 258 ----EIVSGVS----GE--SEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKG 327 (802)
T ss_pred ----hhhcccC----cc--cHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCC
Confidence 2232221 11 34556677777666789999999997542 110 0 0 01111111111111 12
Q ss_pred CCcEEEEEecccchh----hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 296 RRCTIILTSRSRDLL----CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 296 ~~s~ilvTtR~~~v~----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
.+.-||-+|-.++.. .........|.|.--++..-.++++..+.+-.-+..+. .++|++.+-|+-
T Consensus 328 ~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d--~~qlA~lTPGfV 396 (802)
T KOG0733|consen 328 DPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFD--FKQLAKLTPGFV 396 (802)
T ss_pred CCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcC--HHHHHhcCCCcc
Confidence 334444444444332 12223345666776666666667776664322222222 456777666653
No 167
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.53 E-value=0.0011 Score=71.96 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=88.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK 261 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 261 (724)
.-+.|+|+.|+|||+|++.+++..... --.+++++. .++...+...+... ....+...+. .
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~------~~f~~~~~~~l~~~---------~~~~f~~~~~--~ 202 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS------ELFTEHLVSAIRSG---------EMQRFRQFYR--N 202 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH------HHHHHHHHHHHhcc---------hHHHHHHHcc--c
Confidence 568899999999999999999987643 233566653 34444555554321 1122333332 3
Q ss_pred cEEEEEccccccccc----cccccccCCCCcCCCCCCCCCcEEEEEecccch-----h---hhhcCCCceEecCCCCHHH
Q 004895 262 RVLIILDNIWTKLEL----DKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL-----L---CIDMNSQKMFWIDALSEEE 329 (724)
Q Consensus 262 r~LlVlDdv~~~~~~----~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-----~---~~~~~~~~~~~l~~L~~~e 329 (724)
.-+|++||+...... +.+...+..+ ...|..||+||..... . .........+++.+++.++
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l-------~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~ 275 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSL-------HTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEG 275 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHH-------HHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHH
Confidence 458899998654221 1221111110 1134568888865321 0 1112334688999999999
Q ss_pred HHHHHHHHhCCCCCCCCchhHHHHHHHHhCCc
Q 004895 330 ALQLFEKIVGESTKASDFRPLAEEIVGKCGGL 361 (724)
Q Consensus 330 ~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 361 (724)
-..++.+++..... .--+++..-|++.+.|.
T Consensus 276 r~~iL~~k~~~~~~-~l~~evl~~la~~~~~d 306 (445)
T PRK12422 276 LRSFLERKAEALSI-RIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCC
Confidence 99999988753221 11145566666666644
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.53 E-value=0.00047 Score=77.32 Aligned_cols=205 Identities=15% Similarity=0.128 Sum_probs=105.6
Q ss_pred CcccccccchHHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec---CCChHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKD-----DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK---NPDAQK 227 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~ 227 (724)
|.....++|.++.+..+..++.. ...+++.|+|++|+||||+++.++..... +..-|++-.. ..+...
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~----~~~Ew~npv~~~~~~~~~~ 155 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI----QVQEWSNPTLPDFQKNDHK 155 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh----HHHHHhhhhhhcccccccc
Confidence 56677889999999999888863 23457999999999999999999987532 2233422110 000111
Q ss_pred HHHHHHHhhCCCCCCCchhHHHHHHHHHHH------hcCCcEEEEEccccccc-----ccccccc-ccCCCCcCCCCCCC
Q 004895 228 IQGELASDLGMNFDSNDLIYHRAKQLCQRL------KKEKRVLIILDNIWTKL-----ELDKIGI-PYGDVDEKDKNDDP 295 (724)
Q Consensus 228 l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l------~~~kr~LlVlDdv~~~~-----~~~~l~~-~~~~~~~~~~~~~~ 295 (724)
+...+.+++.........-..........+ ..+++.+|+||++.+.. .+..+.. .+.. .+
T Consensus 156 ~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e--------~~ 227 (637)
T TIGR00602 156 VTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVS--------IG 227 (637)
T ss_pred cchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhc--------CC
Confidence 111222222211110000000011111100 12467899999995432 1222212 1111 22
Q ss_pred CCcEEEEEecccc---------hh------hhhc--CCCceEecCCCCHHHHHHHHHHHhCCCCC---CC---CchhHHH
Q 004895 296 RRCTIILTSRSRD---------LL------CIDM--NSQKMFWIDALSEEEALQLFEKIVGESTK---AS---DFRPLAE 352 (724)
Q Consensus 296 ~~s~ilvTtR~~~---------v~------~~~~--~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~---~~---~l~~~~~ 352 (724)
.-.-|++||-+.. .. .... .....+.+.+++..+..+.+.+.+..... .. .-.+...
T Consensus 228 ~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~ 307 (637)
T TIGR00602 228 RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVE 307 (637)
T ss_pred CceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHH
Confidence 2234555663211 00 0001 12346899999999988888777642211 11 0135677
Q ss_pred HHHHHhCCchhHHHHHHHHh
Q 004895 353 EIVGKCGGLPVALSTVANAL 372 (724)
Q Consensus 353 ~I~~~c~GlPLai~~~~~~l 372 (724)
.|+..++|--..+...-..+
T Consensus 308 ~I~~~s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 308 LLCQGCSGDIRSAINSLQFS 327 (637)
T ss_pred HHHHhCCChHHHHHHHHHHH
Confidence 88888888765544444443
No 169
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.0019 Score=67.60 Aligned_cols=146 Identities=12% Similarity=0.142 Sum_probs=85.5
Q ss_pred ccc-hHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhcc--------------------CCCeEEEEEE
Q 004895 162 FNS-RKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDN--------------------VFDKVVMAEI 219 (724)
Q Consensus 162 ~~g-R~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~v 219 (724)
++| .+...+.+...+..++. ....++|+.|+||||+|+.+.+..-... |.|..+...-
T Consensus 7 i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~ 86 (329)
T PRK08058 7 LTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD 86 (329)
T ss_pred HHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc
Confidence 445 67777788887776655 4568999999999999999988764221 2222111111
Q ss_pred ecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCC
Q 004895 220 TKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 220 s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~ 293 (724)
+....+ +.+..+.+.+. .+.+-++|+|++.... ..+.+...+..
T Consensus 87 ~~~i~i----------------------d~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-------- 136 (329)
T PRK08058 87 GQSIKK----------------------DQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-------- 136 (329)
T ss_pred cccCCH----------------------HHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC--------
Confidence 111111 12222333221 2455689999986553 22333223322
Q ss_pred CCCCcEEEEEecccc-hhhhhcCCCceEecCCCCHHHHHHHHHHH
Q 004895 294 DPRRCTIILTSRSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKI 337 (724)
Q Consensus 294 ~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~ 337 (724)
...++.+|++|.+.. +...-.+....+++.++++++..+.+.+.
T Consensus 137 Pp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 137 PSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 334566666666543 32322445678999999999998888653
No 170
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.47 E-value=0.00037 Score=73.16 Aligned_cols=130 Identities=18% Similarity=0.294 Sum_probs=72.9
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCC-cCCCCCccccCCCCCcEEE
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGI-RFSPLPSSLGRLINLQTLC 604 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~lp~~i~~l~~L~~L~ 604 (724)
..+.++|++++|.+..+|. -.++|++|.+. +......+|.. + ..+|+.|++++| .+..+|.+ |++|.
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Ls-nc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--LPNELTEITIE-NCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--CCCCCcEEEcc-CCCCcccCCch-h--hhhhhheEccCcccccccccc------cceEE
Confidence 3678899999998888883 22469999993 33333444432 2 257999999998 66677764 56666
Q ss_pred cCCcccCCcccccCC-CCCcEEEccCCc-Cc--ccchhhhcC-CCCCeEccCCCCCCcccChHHhhCCCCCcEEEccC
Q 004895 605 LDGWRLEDIAIVGQL-KKLEILSLRGAE-IK--QLPLQIGQL-TRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGD 677 (724)
Q Consensus 605 L~~~~l~~~~~~~~l-~~L~~L~l~~~~-i~--~lp~~i~~l-~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 677 (724)
++++.... +..| .+|+.|.+.++. .. .+|. .| .+|++|++++|..+ .+|+. +. .+|+.|+++.
T Consensus 119 L~~n~~~~---L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~-LP--~SLk~L~ls~ 186 (426)
T PRK15386 119 IKGSATDS---IKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEK-LP--ESLQSITLHI 186 (426)
T ss_pred eCCCCCcc---cccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCccc-cc--ccCcEEEecc
Confidence 66554322 1222 235555554321 11 1111 12 45667776665533 22221 11 3566666654
No 171
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.47 E-value=0.0044 Score=63.97 Aligned_cols=173 Identities=16% Similarity=0.224 Sum_probs=97.2
Q ss_pred HHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhcc-----------------CCCeEEEEEEecCCChHHH
Q 004895 167 KIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDN-----------------VFDKVVMAEITKNPDAQKI 228 (724)
Q Consensus 167 ~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~-----------------~F~~~~wv~vs~~~~~~~l 228 (724)
...+.+...+..++.+ .+.++|+.|+||+++|..+++..-... |.| ..|+......
T Consensus 11 ~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD-~~~i~~~p~~----- 84 (319)
T PRK08769 11 RAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPD-LQLVSFIPNR----- 84 (319)
T ss_pred HHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCC-EEEEecCCCc-----
Confidence 3455666666666654 588999999999999999988764321 111 1122100000
Q ss_pred HHHHHHhhCCCCCCCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEE
Q 004895 229 QGELASDLGMNFDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIIL 302 (724)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv 302 (724)
-+.+. ......+.+..+.+.+. .+++-++|+|+++... .-+.+.-.+.. ...++.+|+
T Consensus 85 -------~~~k~-~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~~~fiL 148 (319)
T PRK08769 85 -------TGDKL-RTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE--------PSPGRYLWL 148 (319)
T ss_pred -------ccccc-cccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC--------CCCCCeEEE
Confidence 00000 00011223333433332 2466799999997653 22222222222 334566666
Q ss_pred Eeccc-chhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 303 TSRSR-DLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 303 TtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
+|.+. .+...-.+....+.+.+++.+++.+.+... + .+ ...+..++..++|.|+.+..+
T Consensus 149 ~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~-~---~~---~~~a~~~~~l~~G~p~~A~~~ 208 (319)
T PRK08769 149 ISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ-G---VS---ERAAQEALDAARGHPGLAAQW 208 (319)
T ss_pred EECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc-C---CC---hHHHHHHHHHcCCCHHHHHHH
Confidence 66654 333332444578899999999999888753 1 11 233668899999999866443
No 172
>CHL00176 ftsH cell division protein; Validated
Probab=97.47 E-value=0.002 Score=72.96 Aligned_cols=175 Identities=16% Similarity=0.176 Sum_probs=94.0
Q ss_pred ccccchHHHHHH---HHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHH
Q 004895 160 NIFNSRKKIFQD---VIEALKDD---------KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQK 227 (724)
Q Consensus 160 ~~~~gR~~~~~~---l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 227 (724)
..+.|.++..++ +++.+... ..+-+.++|++|+|||+||+.++..... -|+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-------p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-------PFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-------CeeeccHH----H
Confidence 445566554444 44444321 2346889999999999999999887632 13333211 1
Q ss_pred HHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc------------ccc-cccccCCCCcCCCCCC
Q 004895 228 IQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE------------LDK-IGIPYGDVDEKDKNDD 294 (724)
Q Consensus 228 l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------------~~~-l~~~~~~~~~~~~~~~ 294 (724)
+.... .+. .......+........+++|++||++.... .+. +...+.. .+....
T Consensus 252 f~~~~---~g~-------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~---~dg~~~ 318 (638)
T CHL00176 252 FVEMF---VGV-------GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTE---MDGFKG 318 (638)
T ss_pred HHHHh---hhh-------hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhh---hccccC
Confidence 11100 010 111233444444456789999999964310 100 1011100 011113
Q ss_pred CCCcEEEEEecccchhhhh----cCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCC
Q 004895 295 PRRCTIILTSRSRDLLCID----MNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGG 360 (724)
Q Consensus 295 ~~~s~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G 360 (724)
..+..||.||......... ......+.++..+.++-.++++.++......+ ......+++.+.|
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~--d~~l~~lA~~t~G 386 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSP--DVSLELIARRTPG 386 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccch--hHHHHHHHhcCCC
Confidence 3455677777664432111 12235788888899999999988875422222 2345678888887
No 173
>PRK08118 topology modulation protein; Reviewed
Probab=97.47 E-value=6.9e-05 Score=70.06 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc-cCCCeEEE
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMED-NVFDKVVM 216 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 216 (724)
+.|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 368999999999999999999987653 45677776
No 174
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.46 E-value=0.00044 Score=62.44 Aligned_cols=90 Identities=23% Similarity=0.176 Sum_probs=51.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK 261 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 261 (724)
..+.|+|++|+||||+|+.++....... ..+++++.+........... ............ .......+.......+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 78 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLL-LIIVGGKKASGS-GELRLRLALALARKLK 78 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHH-hhhhhccCCCCC-HHHHHHHHHHHHHhcC
Confidence 5789999999999999999998875432 24666666554332222111 111111111111 2223334444444333
Q ss_pred cEEEEEcccccccc
Q 004895 262 RVLIILDNIWTKLE 275 (724)
Q Consensus 262 r~LlVlDdv~~~~~ 275 (724)
..+|++|++.....
T Consensus 79 ~~viiiDei~~~~~ 92 (148)
T smart00382 79 PDVLILDEITSLLD 92 (148)
T ss_pred CCEEEEECCcccCC
Confidence 48999999987643
No 175
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.45 E-value=0.0086 Score=62.92 Aligned_cols=203 Identities=20% Similarity=0.249 Sum_probs=125.6
Q ss_pred hHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHH-HHHHHHHhhccCCCeEEEEEEecC---CChHHHHHHHHHhhCCC-
Q 004895 165 RKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLV-KQIAKQVMEDNVFDKVVMAEITKN---PDAQKIQGELASDLGMN- 239 (724)
Q Consensus 165 R~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~l~~~i~~~l~~~- 239 (724)
|.+.+++|..||.+..-..|.|.||-|+||+.|+ .++.++.+ .++.++|.+- .+-..++..++.++|.-
T Consensus 1 R~e~~~~L~~wL~e~~~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~qvGY~P 74 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPNTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLASQVGYFP 74 (431)
T ss_pred CchHHHHHHHHHhcCCCeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHHhcCCCc
Confidence 5677899999999888889999999999999999 77766543 2777877643 34455666666665421
Q ss_pred -----------------------CCCCchhHHHHHHHHH----HHh-------------------------cCCcEEEEE
Q 004895 240 -----------------------FDSNDLIYHRAKQLCQ----RLK-------------------------KEKRVLIIL 267 (724)
Q Consensus 240 -----------------------~~~~~~~~~~~~~l~~----~l~-------------------------~~kr~LlVl 267 (724)
..-....+.....+.+ .|+ ..++=+||+
T Consensus 75 vFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~PVVVI 154 (431)
T PF10443_consen 75 VFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERRPVVVI 154 (431)
T ss_pred chHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccCCEEEE
Confidence 1111111222211111 111 022568999
Q ss_pred ccccccc-----------cccccccccCCCCcCCCCCCCCCcEEEEEecccchh-----hhhcCCCceEecCCCCHHHHH
Q 004895 268 DNIWTKL-----------ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL-----CIDMNSQKMFWIDALSEEEAL 331 (724)
Q Consensus 268 Ddv~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-----~~~~~~~~~~~l~~L~~~e~~ 331 (724)
|+.-... +|... +. ..+=.+||++|-+.... .........+.|...+++.|.
T Consensus 155 dnF~~k~~~~~~iy~~laeWAa~---Lv---------~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak 222 (431)
T PF10443_consen 155 DNFLHKAEENDFIYDKLAEWAAS---LV---------QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAK 222 (431)
T ss_pred cchhccCcccchHHHHHHHHHHH---HH---------hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHH
Confidence 9984431 24332 11 33456788888776543 122345678899999999999
Q ss_pred HHHHHHhCCCCCC-------------------CCchhHHHHHHHHhCCchhHHHHHHHHhcC-CCH-HHHHHHHH
Q 004895 332 QLFEKIVGESTKA-------------------SDFRPLAEEIVGKCGGLPVALSTVANALKN-KSP-AIWKDALN 385 (724)
Q Consensus 332 ~Lf~~~~~~~~~~-------------------~~l~~~~~~I~~~c~GlPLai~~~~~~l~~-~~~-~~w~~~~~ 385 (724)
.+...+....... .....-....++.+||=-.-+..+++.++. .++ +..+.+.+
T Consensus 223 ~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 223 QYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999988532110 123344567788888888888888888873 333 33444443
No 176
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.45 E-value=0.00023 Score=65.96 Aligned_cols=102 Identities=24% Similarity=0.230 Sum_probs=75.2
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC--ccccCCCCCcEEE
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP--SSLGRLINLQTLC 604 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~ 604 (724)
+....+++++|++..++....++.|.+|.+ +++++..+.+..-.-+++|..|.|.+|++..+- .-+..++.|+||.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll--~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLL--NNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEe--cCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 455567888888877777777888888888 566666666665566778888888888887542 3456677888888
Q ss_pred cCCcccCCc-----ccccCCCCCcEEEccCC
Q 004895 605 LDGWRLEDI-----AIVGQLKKLEILSLRGA 630 (724)
Q Consensus 605 L~~~~l~~~-----~~~~~l~~L~~L~l~~~ 630 (724)
+-+|.++.- --++.+++|++||+++-
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 888887662 34778888888888764
No 177
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0035 Score=67.50 Aligned_cols=140 Identities=18% Similarity=0.282 Sum_probs=85.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
...-|.++|++|+|||-||+.|+|..... |++|.+. +++.... | + .+..+..++++-+.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANEag~N-------FisVKGP----ELlNkYV---G-----E--SErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANEAGAN-------FISVKGP----ELLNKYV---G-----E--SERAVRQVFQRARA 602 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhhccCc-------eEeecCH----HHHHHHh---h-----h--HHHHHHHHHHHhhc
Confidence 35668899999999999999999988654 5666543 3332221 1 1 34456677777777
Q ss_pred CCcEEEEEccccccc-------cccccccccCCCCcCCCCCCCCCcEEEEEecccchhhhhc----CCCceEecCCCCHH
Q 004895 260 EKRVLIILDNIWTKL-------ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCIDM----NSQKMFWIDALSEE 328 (724)
Q Consensus 260 ~kr~LlVlDdv~~~~-------~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~ 328 (724)
..+|+|+||.++... .|..-+..-.-+..++......|.-||-.|-.+++...++ .-...+-++.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 889999999996531 1110000000011222333556777888887776531111 12245556667788
Q ss_pred HHHHHHHHHhCC
Q 004895 329 EALQLFEKIVGE 340 (724)
Q Consensus 329 e~~~Lf~~~~~~ 340 (724)
|-.++++.....
T Consensus 683 eR~~ILK~~tkn 694 (802)
T KOG0733|consen 683 ERVAILKTITKN 694 (802)
T ss_pred HHHHHHHHHhcc
Confidence 888888888763
No 178
>PRK08181 transposase; Validated
Probab=97.43 E-value=0.0036 Score=63.06 Aligned_cols=79 Identities=22% Similarity=0.199 Sum_probs=48.9
Q ss_pred HHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHH
Q 004895 174 EALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQL 253 (724)
Q Consensus 174 ~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l 253 (724)
+|+. ...-+.++|++|+|||.||..+.+....+ ...++|+++ .+++..+..... .. .....
T Consensus 101 ~~~~--~~~nlll~Gp~GtGKTHLa~Aia~~a~~~--g~~v~f~~~------~~L~~~l~~a~~----~~-----~~~~~ 161 (269)
T PRK08181 101 SWLA--KGANLLLFGPPGGGKSHLAAAIGLALIEN--GWRVLFTRT------TDLVQKLQVARR----EL-----QLESA 161 (269)
T ss_pred HHHh--cCceEEEEecCCCcHHHHHHHHHHHHHHc--CCceeeeeH------HHHHHHHHHHHh----CC-----cHHHH
Confidence 4554 33468999999999999999999987543 234566653 455555543321 11 12233
Q ss_pred HHHHhcCCcEEEEEcccccc
Q 004895 254 CQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 254 ~~~l~~~kr~LlVlDdv~~~ 273 (724)
.+.+. +.=||||||+...
T Consensus 162 l~~l~--~~dLLIIDDlg~~ 179 (269)
T PRK08181 162 IAKLD--KFDLLILDDLAYV 179 (269)
T ss_pred HHHHh--cCCEEEEeccccc
Confidence 44443 3459999999543
No 179
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.41 E-value=3.9e-05 Score=76.69 Aligned_cols=136 Identities=17% Similarity=0.164 Sum_probs=81.6
Q ss_pred CCCCceEEEcCCCcCCCCC-----ccccCCCCCcEEEcCCcccCCc------ccccCCCCCcEEEccCCcCc-----ccc
Q 004895 573 GTEELKVLDFTGIRFSPLP-----SSLGRLINLQTLCLDGWRLEDI------AIVGQLKKLEILSLRGAEIK-----QLP 636 (724)
Q Consensus 573 ~l~~L~~L~l~~~~~~~lp-----~~i~~l~~L~~L~L~~~~l~~~------~~~~~l~~L~~L~l~~~~i~-----~lp 636 (724)
.-+.|||+..+.|++..-| ..+...+.|..+.+..|.|... ..+..+++|+.|||+.|-++ .+.
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 3466788887777776433 2345556777777777776541 45677788888888887655 234
Q ss_pred hhhhcCCCCCeEccCCCCCCcc----cChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccc
Q 004895 637 LQIGQLTRLQLLDLSNCSSLVV----IAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDA 712 (724)
Q Consensus 637 ~~i~~l~~L~~L~l~~~~~l~~----~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~ 712 (724)
..+..+++|+.|++++|..-.. +....-...++|+.|.+.+|..... ........+...+.|..|++++|++
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~d----a~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRD----AALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHH----HHHHHHHHHhcchhhHHhcCCcccc
Confidence 4556677788888887742111 1111123467788888877643211 0011112334467888888888877
No 180
>PRK08116 hypothetical protein; Validated
Probab=97.40 E-value=0.00055 Score=69.29 Aligned_cols=74 Identities=22% Similarity=0.266 Sum_probs=47.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK 261 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 261 (724)
..+.++|..|+|||.||..+++....+ -..++++++ .+++..+.......... ....+.+.+.+ -
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~------~~ll~~i~~~~~~~~~~------~~~~~~~~l~~-~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNF------PQLLNRIKSTYKSSGKE------DENEIIRSLVN-A 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEH------HHHHHHHHHHHhccccc------cHHHHHHHhcC-C
Confidence 458899999999999999999998653 234666653 34555555444321111 12234444442 2
Q ss_pred cEEEEEcccc
Q 004895 262 RVLIILDNIW 271 (724)
Q Consensus 262 r~LlVlDdv~ 271 (724)
=||||||+.
T Consensus 180 -dlLviDDlg 188 (268)
T PRK08116 180 -DLLILDDLG 188 (268)
T ss_pred -CEEEEeccc
Confidence 389999994
No 181
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.40 E-value=0.0004 Score=65.57 Aligned_cols=103 Identities=16% Similarity=0.174 Sum_probs=69.0
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
|.....+||-++.++.+.-.-.+++.+-+.|.||+|+||||-+..+++..-....=+.+.=.+.|+...++-+-..|-.-
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeRGIDvVRn~IK~F 102 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDERGIDVVRNKIKMF 102 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccccccHHHHHHHHHH
Confidence 45566788999888888777678899999999999999999999999887543333455556666655544332222111
Q ss_pred hCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 236 LGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 236 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
. +-.-.+..++.-.+|||..++.
T Consensus 103 A---------------Q~kv~lp~grhKIiILDEADSM 125 (333)
T KOG0991|consen 103 A---------------QKKVTLPPGRHKIIILDEADSM 125 (333)
T ss_pred H---------------HhhccCCCCceeEEEeeccchh
Confidence 0 0011112356678999999765
No 182
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.40 E-value=0.0026 Score=69.66 Aligned_cols=178 Identities=13% Similarity=0.114 Sum_probs=92.3
Q ss_pred cccccchHHHHHHHHHHhc----------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHH
Q 004895 159 YNIFNSRKKIFQDVIEALK----------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKI 228 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~----------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l 228 (724)
...+.|.+..++.+.+... -...+-|.++|++|+|||.+|+.+++..... .+-++.+. +
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~-----~~~l~~~~------l 295 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLP-----LLRLDVGK------L 295 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEEhHH------h
Confidence 3456677766665554211 1234578899999999999999999987532 12222221 1
Q ss_pred HHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc----ccc------c-ccccCCCCcCCCCCCCCC
Q 004895 229 QGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE----LDK------I-GIPYGDVDEKDKNDDPRR 297 (724)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----~~~------l-~~~~~~~~~~~~~~~~~~ 297 (724)
. . ..... .......+.+......+++|++|+++.... ... + ...+..+. ....+
T Consensus 296 ~----~----~~vGe--se~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~-----~~~~~ 360 (489)
T CHL00195 296 F----G----GIVGE--SESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLS-----EKKSP 360 (489)
T ss_pred c----c----cccCh--HHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHh-----cCCCc
Confidence 1 1 01111 122334444444445789999999975311 000 0 00000000 01233
Q ss_pred cEEEEEecccchhhhh----cCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 298 CTIILTSRSRDLLCID----MNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 298 s~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
.-||.||......... ......+.++.-+.++-.++|+.+.........-......+++.+.|+-
T Consensus 361 V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfS 429 (489)
T CHL00195 361 VFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFS 429 (489)
T ss_pred eEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCC
Confidence 4466677655422111 1233567788888899999998877532211100122456666666654
No 183
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.39 E-value=0.0073 Score=62.47 Aligned_cols=176 Identities=10% Similarity=0.103 Sum_probs=95.4
Q ss_pred HHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCC-----C-C
Q 004895 169 FQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMN-----F-D 241 (724)
Q Consensus 169 ~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~-----~-~ 241 (724)
-+.+...+..++. ..+.+.|+.|+||+++|..+++..--...... ..++.=.-.+.+...-..+ . .
T Consensus 11 ~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~p~~ 83 (325)
T PRK06871 11 YQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD-------QPCGQCHSCHLFQAGNHPDFHILEPID 83 (325)
T ss_pred HHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEcccc
Confidence 4556666665554 56778999999999999999987643211100 0000000011111000000 0 0
Q ss_pred CCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEeccc-chhhhhc
Q 004895 242 SNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSR-DLLCIDM 314 (724)
Q Consensus 242 ~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~ 314 (724)
......+.+..+.+.+. .+++-++|+|+++... ..+.+.-.+.. ...++.+|++|.+. .+...-.
T Consensus 84 ~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE--------Pp~~~~fiL~t~~~~~llpTI~ 155 (325)
T PRK06871 84 NKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE--------PRPNTYFLLQADLSAALLPTIY 155 (325)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC--------CCCCeEEEEEECChHhCchHHH
Confidence 00111223333444332 2566788999997653 23333222222 33455666666654 3433323
Q ss_pred CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 315 NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 315 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
+....+.+.++++++..+.+....... ...+...+..++|.|+.+
T Consensus 156 SRC~~~~~~~~~~~~~~~~L~~~~~~~------~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 156 SRCQTWLIHPPEEQQALDWLQAQSSAE------ISEILTALRINYGRPLLA 200 (325)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHhccC------hHHHHHHHHHcCCCHHHH
Confidence 445789999999999999888764211 223567788999999643
No 184
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0029 Score=71.11 Aligned_cols=181 Identities=15% Similarity=0.114 Sum_probs=109.5
Q ss_pred ccccchH---HHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHH
Q 004895 160 NIFNSRK---KIFQDVIEALKDD---------KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQK 227 (724)
Q Consensus 160 ~~~~gR~---~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 227 (724)
.++.|-+ +|++++++.|.++ -++=+.++|++|+|||-||++++-...+- |+++|..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVP-------F~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVP-------FFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCc-------eeeechH-----
Confidence 3445544 4566666777632 24668899999999999999999877653 5666643
Q ss_pred HHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccccc--------------cccccCCCCcCCCCC
Q 004895 228 IQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELDK--------------IGIPYGDVDEKDKND 293 (724)
Q Consensus 228 l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~--------------l~~~~~~~~~~~~~~ 293 (724)
++++.+... ....+..++..-+...++.+.+|+++....-.. +...+ .+.+...
T Consensus 379 ---EFvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll---~emDgf~ 446 (774)
T KOG0731|consen 379 ---EFVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLL---VEMDGFE 446 (774)
T ss_pred ---HHHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHH---HHhcCCc
Confidence 223322211 122455666666667889999999865421110 00011 1112333
Q ss_pred CCCCcEEEEEecccchhhhh----cCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 294 DPRRCTIILTSRSRDLLCID----MNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 294 ~~~~s~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
...+.-++-+|...++.+.+ ..-...+.++.=+...-.++|.-++.......+..++.+ |+...-|.+=|.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHH-HHhcCCCCcHHH
Confidence 34445566667766664221 122356777777788888899988865444344456666 999998888554
No 185
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.37 E-value=0.012 Score=60.71 Aligned_cols=164 Identities=13% Similarity=0.181 Sum_probs=94.9
Q ss_pred HHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhc-------------------cCCCeEEEEEEecCCChHH
Q 004895 168 IFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMED-------------------NVFDKVVMAEITKNPDAQK 227 (724)
Q Consensus 168 ~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~-------------------~~F~~~~wv~vs~~~~~~~ 227 (724)
..+++...+..++. ..+.++|+.|+||+++|..+++..--. .|.|. .|+.-..
T Consensus 11 ~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~------ 83 (319)
T PRK06090 11 VWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL-HVIKPEK------ 83 (319)
T ss_pred HHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecCc------
Confidence 34556666655554 578899999999999999998875321 12221 1221100
Q ss_pred HHHHHHHhhCCCCCCCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEE
Q 004895 228 IQGELASDLGMNFDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTII 301 (724)
Q Consensus 228 l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~il 301 (724)
.......+.+..+.+.+. .+++-++|+|+++... ..+.+.-.+.. ...++.+|
T Consensus 84 -------------~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~t~fi 142 (319)
T PRK06090 84 -------------EGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE--------PAPNCLFL 142 (319)
T ss_pred -------------CCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC--------CCCCeEEE
Confidence 000001122233333331 2456799999997653 33333222222 33455555
Q ss_pred EEeccc-chhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 302 LTSRSR-DLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 302 vTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
++|.+. .+...-.+....+.+.+++.+++.+.+... +. . .+..++..++|.|+.+..+
T Consensus 143 L~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~-~~---~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 143 LVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ-GI---T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc-CC---c-----hHHHHHHHcCCCHHHHHHH
Confidence 555544 444333455678999999999999988764 11 1 2457889999999876543
No 186
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.37 E-value=0.002 Score=66.96 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=68.3
Q ss_pred HHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCe-EEEEEEecC-CChHHHHHHHHHhhCCCCCCCch
Q 004895 169 FQDVIEALKD-DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDK-VVMAEITKN-PDAQKIQGELASDLGMNFDSNDL 245 (724)
Q Consensus 169 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~-~~~~~l~~~i~~~l~~~~~~~~~ 245 (724)
..++++.+.. ++-..+.|+|.+|+|||||++.+++..... +-+. ++|+.+.+. ..+.++.+.+...+.....+...
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~-~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAAN-HPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhc-CCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 3446776652 344577999999999999999999987643 4454 467777765 46788888888777654332221
Q ss_pred hH-----HHHHHHHHHH-hcCCcEEEEEcccccc
Q 004895 246 IY-----HRAKQLCQRL-KKEKRVLIILDNIWTK 273 (724)
Q Consensus 246 ~~-----~~~~~l~~~l-~~~kr~LlVlDdv~~~ 273 (724)
.. .......+++ .++++++||+|++...
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~ 232 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRL 232 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHH
Confidence 11 1122233333 3589999999999543
No 187
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.34 E-value=0.0048 Score=72.01 Aligned_cols=102 Identities=17% Similarity=0.254 Sum_probs=60.5
Q ss_pred cccchHHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALKD-------D--KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
.++|.++.++.+...+.. + ...++.++|+.|+|||+||+.+++... ...+.++.++..... .
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~-----~~~~~~d~se~~~~~----~ 525 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG-----VHLERFDMSEYMEKH----T 525 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc-----CCeEEEeCchhhhcc----c
Confidence 356888888887777651 1 234688999999999999999998762 335666665432211 1
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
+...++...... ..+....+.+.+......+++||+++..
T Consensus 526 ~~~lig~~~gyv--g~~~~~~l~~~~~~~p~~VvllDEieka 565 (731)
T TIGR02639 526 VSRLIGAPPGYV--GFEQGGLLTEAVRKHPHCVLLLDEIEKA 565 (731)
T ss_pred HHHHhcCCCCCc--ccchhhHHHHHHHhCCCeEEEEechhhc
Confidence 122223221110 0111233444554445679999999765
No 188
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.33 E-value=0.003 Score=60.88 Aligned_cols=178 Identities=16% Similarity=0.208 Sum_probs=101.4
Q ss_pred cccccchHHHHHH---HHHHhcC------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHH
Q 004895 159 YNIFNSRKKIFQD---VIEALKD------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQ 229 (724)
Q Consensus 159 ~~~~~gR~~~~~~---l~~~L~~------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 229 (724)
.+.++|.++.+.+ |++.|.+ -..+-|..+|++|.|||.+|+.+++..++- ++.+. ..+++
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp-------~l~vk----at~li 188 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVP-------LLLVK----ATELI 188 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCc-------eEEec----hHHHH
Confidence 4567787766543 5566653 357889999999999999999999987653 22221 11221
Q ss_pred HHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc---ccccc-------ccccCCCCcCCCCCCCCCcE
Q 004895 230 GELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL---ELDKI-------GIPYGDVDEKDKNDDPRRCT 299 (724)
Q Consensus 230 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---~~~~l-------~~~~~~~~~~~~~~~~~~s~ 299 (724)
-+..| + ....+.++++.-.+.-+|++++|.++... .++.+ ..++ +..+++...+.|..
T Consensus 189 ---GehVG----d---gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNAL--LTelDgi~eneGVv 256 (368)
T COG1223 189 ---GEHVG----D---GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNAL--LTELDGIKENEGVV 256 (368)
T ss_pred ---HHHhh----h---HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHH--HHhccCcccCCceE
Confidence 12222 1 23355666666666789999999986541 11111 1111 11122223455666
Q ss_pred EEEEecccchh--hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCc
Q 004895 300 IILTSRSRDLL--CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGL 361 (724)
Q Consensus 300 ilvTtR~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 361 (724)
.|-.|.+.... .........++..--+++|-.+++...+..-.-+- ..-.+.++++.+|.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv--~~~~~~~~~~t~g~ 318 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV--DADLRYLAAKTKGM 318 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc--ccCHHHHHHHhCCC
Confidence 66666655543 11122234566666778888888888774221111 12255677777664
No 189
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.0026 Score=70.05 Aligned_cols=161 Identities=22% Similarity=0.264 Sum_probs=92.1
Q ss_pred cchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhh
Q 004895 163 NSRKKIFQDVIEALK------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDL 236 (724)
Q Consensus 163 ~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 236 (724)
.|-++.+++|++.|. .-+-+++.+|||+|+|||+|++.+++-...+ .+-+++++-.|..++-..=-..+
T Consensus 326 YGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk-----fvR~sLGGvrDEAEIRGHRRTYI 400 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK-----FVRISLGGVRDEAEIRGHRRTYI 400 (782)
T ss_pred cCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC-----EEEEecCccccHHHhcccccccc
Confidence 388899999999885 2345799999999999999999999987543 34556667667665522111111
Q ss_pred CCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc-cc-----cc---cccc-----cCC-CCcCCCCCCCCCcEEE
Q 004895 237 GMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL-EL-----DK---IGIP-----YGD-VDEKDKNDDPRRCTII 301 (724)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-~~-----~~---l~~~-----~~~-~~~~~~~~~~~~s~il 301 (724)
|. ......+.+.+. +.++=|++||.++... ++ .. +..| |.+ +... .-.-.....|
T Consensus 401 Ga------mPGrIiQ~mkka--~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev--~yDLS~VmFi 470 (782)
T COG0466 401 GA------MPGKIIQGMKKA--GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEV--PYDLSKVMFI 470 (782)
T ss_pred cc------CChHHHHHHHHh--CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccC--ccchhheEEE
Confidence 11 011122222222 2466799999986541 10 00 0000 000 0000 0011122233
Q ss_pred EEecccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 302 LTSRSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 302 vTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
.|.-+-+ +..........+++.+.+++|-.++-+++.
T Consensus 471 aTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 471 ATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 4444333 333335666899999999999988887765
No 190
>PRK10536 hypothetical protein; Provisional
Probab=97.27 E-value=0.0011 Score=65.29 Aligned_cols=56 Identities=18% Similarity=0.289 Sum_probs=41.8
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEE
Q 004895 159 YNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVM 216 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 216 (724)
...+.+|......++.++.+. .++.+.|++|+|||+||..++.+.-..+.|+.++-
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 345667888888888888653 49999999999999999999986432344554443
No 191
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.26 E-value=0.0071 Score=70.80 Aligned_cols=178 Identities=17% Similarity=0.203 Sum_probs=96.6
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 159 YNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
...+.|.+..++.|.+.+. -...+-+.++|++|+|||++|+.+++.... . ++.++..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--~-----fi~v~~~--- 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--N-----FIAVRGP--- 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC--C-----EEEEehH---
Confidence 3456677777666665542 123456889999999999999999997642 1 2333221
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccc----------ccccc-ccCCCCcCCCCCC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLEL----------DKIGI-PYGDVDEKDKNDD 294 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~----------~~l~~-~~~~~~~~~~~~~ 294 (724)
++ +.. ...+ .+.....++.......+.+|++|+++....- +.+.. .+.. .+....
T Consensus 522 -~l----~~~----~vGe--se~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~---ldg~~~ 587 (733)
T TIGR01243 522 -EI----LSK----WVGE--SEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTE---MDGIQE 587 (733)
T ss_pred -HH----hhc----ccCc--HHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHH---hhcccC
Confidence 11 111 1111 2234455555555567899999999643110 00000 0000 001112
Q ss_pred CCCcEEEEEecccchhh-hhc---CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 295 PRRCTIILTSRSRDLLC-IDM---NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 295 ~~~s~ilvTtR~~~v~~-~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
..+.-||.||....... ... .....+.++..+.++-.++|+.........++ .....+++.|.|+-
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~--~~l~~la~~t~g~s 657 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAED--VDLEELAEMTEGYT 657 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCcc--CCHHHHHHHcCCCC
Confidence 33455666776554321 111 23457888888888888898876543222221 12456777787754
No 192
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.26 E-value=0.0062 Score=61.62 Aligned_cols=58 Identities=22% Similarity=0.332 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHH
Q 004895 166 KKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQG 230 (724)
Q Consensus 166 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 230 (724)
.+.++++..++..+ .-+.+.|++|+|||++|+.+++... ...+.++++...+..+++.
T Consensus 8 ~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dllg 65 (262)
T TIGR02640 8 KRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLVG 65 (262)
T ss_pred HHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHhh
Confidence 34455566655443 2456899999999999999987442 1245666666666555543
No 193
>PHA00729 NTP-binding motif containing protein
Probab=97.25 E-value=0.0017 Score=62.81 Aligned_cols=36 Identities=25% Similarity=0.444 Sum_probs=28.7
Q ss_pred HHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 171 DVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 171 ~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+++.+...+...|.|+|.+|+||||||..+.+...
T Consensus 7 ~~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 7 KIVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred HHHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345555555666889999999999999999999753
No 194
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0041 Score=65.59 Aligned_cols=135 Identities=16% Similarity=0.198 Sum_probs=83.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
....+.|+|..|.|||.|++.+.+.......=..+++++. ++...+++..+.. .......+.. +
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s------e~f~~~~v~a~~~---------~~~~~Fk~~y-~ 175 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS------EDFTNDFVKALRD---------NEMEKFKEKY-S 175 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH------HHHHHHHHHHHHh---------hhHHHHHHhh-c
Confidence 4778999999999999999999999875322123555532 3444444444321 2234444444 2
Q ss_pred CCcEEEEEcccccccc---cc-ccccccCCCCcCCCCCCCCCcEEEEEecccchh--------hhhcCCCceEecCCCCH
Q 004895 260 EKRVLIILDNIWTKLE---LD-KIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL--------CIDMNSQKMFWIDALSE 327 (724)
Q Consensus 260 ~kr~LlVlDdv~~~~~---~~-~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~--------~~~~~~~~~~~l~~L~~ 327 (724)
-=++++||++-... |+ .+...+..+ ...|-.||+|++...-. .......-.+++.+.+.
T Consensus 176 --~dlllIDDiq~l~gk~~~qeefFh~FN~l-------~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~ 246 (408)
T COG0593 176 --LDLLLIDDIQFLAGKERTQEEFFHTFNAL-------LENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDD 246 (408)
T ss_pred --cCeeeechHhHhcCChhHHHHHHHHHHHH-------HhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCH
Confidence 23899999976432 22 121111110 22344799999765421 11234456899999999
Q ss_pred HHHHHHHHHHhC
Q 004895 328 EEALQLFEKIVG 339 (724)
Q Consensus 328 ~e~~~Lf~~~~~ 339 (724)
+.-..++.+++.
T Consensus 247 e~r~aiL~kka~ 258 (408)
T COG0593 247 ETRLAILRKKAE 258 (408)
T ss_pred HHHHHHHHHHHH
Confidence 999999999775
No 195
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.0038 Score=61.28 Aligned_cols=178 Identities=17% Similarity=0.190 Sum_probs=95.8
Q ss_pred cccchHHHHHHHHHHhc----------C--CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHH
Q 004895 161 IFNSRKKIFQDVIEALK----------D--DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKI 228 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~----------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l 228 (724)
.+.|-+..++.|.+... . ...+-|.++|++|.||+.||+.|+..... -|++||.. ++
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS-------TFFSvSSS----DL 202 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS-------TFFSVSSS----DL 202 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC-------ceEEeehH----HH
Confidence 34455555555555532 1 23578899999999999999999987653 24555543 23
Q ss_pred HHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc---------cccccccccCCCCcCCCCCCCCCcE
Q 004895 229 QGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL---------ELDKIGIPYGDVDEKDKNDDPRRCT 299 (724)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~~~~~~~~~s~ 299 (724)
.... +| + .+.++..|++.-+..++.+|++|.++... .-..+..-+. ++.+..-.+..|.-
T Consensus 203 vSKW---mG-----E--SEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfL-VQMqGVG~d~~gvL 271 (439)
T KOG0739|consen 203 VSKW---MG-----E--SEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFL-VQMQGVGNDNDGVL 271 (439)
T ss_pred HHHH---hc-----c--HHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHH-HhhhccccCCCceE
Confidence 2222 11 1 34566777777777899999999996431 1111110000 00000001345556
Q ss_pred EEEEecccchhhhhc--CCCceEecCCCCHHHHHH-HHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 300 IILTSRSRDLLCIDM--NSQKMFWIDALSEEEALQ-LFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 300 ilvTtR~~~v~~~~~--~~~~~~~l~~L~~~e~~~-Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
|+-.|..+-+..... .....|- =||.+..|+. +|+-+.|... ..-.++..+++.++..|+-
T Consensus 272 VLgATNiPw~LDsAIRRRFekRIY-IPLPe~~AR~~MF~lhlG~tp-~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 272 VLGATNIPWVLDSAIRRRFEKRIY-IPLPEAHARARMFKLHLGDTP-HVLTEQDFKELARKTEGYS 335 (439)
T ss_pred EEecCCCchhHHHHHHHHhhccee-ccCCcHHHhhhhheeccCCCc-cccchhhHHHHHhhcCCCC
Confidence 666666654431111 1111222 2566666665 5655555332 2222455677888887754
No 196
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.23 E-value=0.0023 Score=59.43 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHhcCCCcc-EEEEEcCCCCcHHHHHHHHHHHHhhccCC------------------CeEEEEEEecC--
Q 004895 164 SRKKIFQDVIEALKDDKLN-IIGVCGMGGVGKTTLVKQIAKQVMEDNVF------------------DKVVMAEITKN-- 222 (724)
Q Consensus 164 gR~~~~~~l~~~L~~~~~~-vi~I~G~gGiGKTtLa~~v~~~~~~~~~F------------------~~~~wv~vs~~-- 222 (724)
|.++..+.|.+.+..++.+ .+.++|+.|+||+++|..+++..-..... .-+.|+.-.+.
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 5567777787777766654 67999999999999999999876432211 11333322221
Q ss_pred -CChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcE
Q 004895 223 -PDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCT 299 (724)
Q Consensus 223 -~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ 299 (724)
...+++ +++.+.+..... .+++-++|+||++... ..+.+.-.+.. ....+.
T Consensus 81 ~i~i~~i-r~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEe--------pp~~~~ 134 (162)
T PF13177_consen 81 SIKIDQI-REIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEE--------PPENTY 134 (162)
T ss_dssp SBSHHHH-HHHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHS--------TTTTEE
T ss_pred hhhHHHH-HHHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcC--------CCCCEE
Confidence 222222 233333322111 1356799999998752 34444333333 445788
Q ss_pred EEEEecccc-hhhhhcCCCceEecCCCC
Q 004895 300 IILTSRSRD-LLCIDMNSQKMFWIDALS 326 (724)
Q Consensus 300 ilvTtR~~~-v~~~~~~~~~~~~l~~L~ 326 (724)
+|++|.+.. +...-.+....+.+.++|
T Consensus 135 fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 135 FILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEEECChHHChHHHHhhceEEecCCCC
Confidence 888888765 333334445677776664
No 197
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=3.2e-05 Score=75.49 Aligned_cols=175 Identities=21% Similarity=0.138 Sum_probs=117.1
Q ss_pred cCceEEeccCCCccc--CCCc-ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCc-CCC--CCccccCCCCC
Q 004895 527 KGPIAISLPYRDIQE--LPER-LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIR-FSP--LPSSLGRLINL 600 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~--~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~--lp~~i~~l~~L 600 (724)
.+++|++++...++. +... ..|.+|+.|.+. +.....-.-..+..-.+|+.|++++|. +++ +---+.++..|
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlE--g~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLE--GLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhcccc--ccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 357777777666632 2221 267777777772 222111111224455789999999875 342 22345788899
Q ss_pred cEEEcCCcccCCc---ccccCC-CCCcEEEccCCc----CcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcE
Q 004895 601 QTLCLDGWRLEDI---AIVGQL-KKLEILSLRGAE----IKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEE 672 (724)
Q Consensus 601 ~~L~L~~~~l~~~---~~~~~l-~~L~~L~l~~~~----i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~ 672 (724)
..|+|++|.+..+ -.+... ++|.-|+++|+. .+.+..-..++++|.+|+|+.|..++.--...+.+++-|++
T Consensus 263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 9999999986652 112222 478889999973 22333345689999999999988776644456789999999
Q ss_pred EEccCCCCccccccCCccchHHhhcCCCCCcEEEeecc
Q 004895 673 LYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVR 710 (724)
Q Consensus 673 L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n 710 (724)
|.++.|+. ..|..+-++...+.|..|++.+.
T Consensus 343 lSlsRCY~-------i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 343 LSLSRCYD-------IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eehhhhcC-------CChHHeeeeccCcceEEEEeccc
Confidence 99999863 33556678888899999998765
No 198
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.20 E-value=0.01 Score=61.93 Aligned_cols=164 Identities=13% Similarity=0.170 Sum_probs=95.5
Q ss_pred HHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhc--------------------cCCCeEEEEEEecCCChH
Q 004895 168 IFQDVIEALKDDK-LNIIGVCGMGGVGKTTLVKQIAKQVMED--------------------NVFDKVVMAEITKNPDAQ 226 (724)
Q Consensus 168 ~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~vs~~~~~~ 226 (724)
.-+++...+..++ ...+.+.|+.|+||+++|..++...--. .|.|. .++.-...
T Consensus 10 ~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~-~~i~p~~~---- 84 (334)
T PRK07993 10 DYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY-YTLTPEKG---- 84 (334)
T ss_pred HHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE-EEEecccc----
Confidence 3456667666555 4567799999999999999998876321 12221 11110000
Q ss_pred HHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEE
Q 004895 227 KIQGELASDLGMNFDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTI 300 (724)
Q Consensus 227 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~i 300 (724)
......+.+..+.+.+. .+++-++|+|+++... .-+.+.-.+.. ...++.+
T Consensus 85 ---------------~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~t~f 141 (334)
T PRK07993 85 ---------------KSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE--------PPENTWF 141 (334)
T ss_pred ---------------cccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC--------CCCCeEE
Confidence 00011223333444332 2567799999997653 23333222222 3345566
Q ss_pred EEEeccc-chhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 301 ILTSRSR-DLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 301 lvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
|++|.+. .+...-.+..+.+.+.+++.+++.+.+....+ .+ .+.+..++..++|.|..+
T Consensus 142 iL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~~---~~---~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 142 FLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREVT---MS---QDALLAALRLSAGAPGAA 201 (334)
T ss_pred EEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHccC---CC---HHHHHHHHHHcCCCHHHH
Confidence 6666554 34333244456889999999999988865422 11 334678899999999644
No 199
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0057 Score=66.81 Aligned_cols=180 Identities=12% Similarity=0.177 Sum_probs=91.8
Q ss_pred cccccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC
Q 004895 157 KDYNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP 223 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (724)
.....+-|-++.+.+|-+... -...+-|..+|++|+|||++|+.+++..... |+.++..
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~n-------Flsvkgp- 502 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMN-------FLSVKGP- 502 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCC-------eeeccCH-
Confidence 334455566665555554432 1456788999999999999999999987643 3444332
Q ss_pred ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccccc---------ccc-cccCCCCcCCCCC
Q 004895 224 DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELD---------KIG-IPYGDVDEKDKND 293 (724)
Q Consensus 224 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~---------~l~-~~~~~~~~~~~~~ 293 (724)
+++... -.+ .+..+..++..-++--+++|+||.++....-. .+. ..+. ..+...
T Consensus 503 ---EL~sk~--------vGe--SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLt---EmDG~e 566 (693)
T KOG0730|consen 503 ---ELFSKY--------VGE--SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLT---EMDGLE 566 (693)
T ss_pred ---HHHHHh--------cCc--hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHH---Hccccc
Confidence 221111 111 23344555555555567999999986542111 000 0000 011111
Q ss_pred CCCCcEEEEEecccchh-hhhcC---CCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 294 DPRRCTIILTSRSRDLL-CIDMN---SQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 294 ~~~~s~ilvTtR~~~v~-~~~~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
...+.-||-.|-.++.. ...+. ....+.++.=+.+.-.++|+.++....-.++ -...+|++++.|.-
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~--vdl~~La~~T~g~S 637 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED--VDLEELAQATEGYS 637 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHhccCC
Confidence 22333344444444322 11122 2345555555555666788888754332222 12345566555543
No 200
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.19 E-value=0.0053 Score=68.58 Aligned_cols=49 Identities=18% Similarity=0.272 Sum_probs=39.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.....++|.+..++.+...+......-+.|+|++|+|||++|+.+++..
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3455688999999988877765555667899999999999999998764
No 201
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.17 E-value=0.0004 Score=69.66 Aligned_cols=162 Identities=20% Similarity=0.266 Sum_probs=110.2
Q ss_pred cCCCccEEEEecccccccc--cchhhhcCCCCceEEEcCCCcCCCC--------------CccccCCCCCcEEEcCCccc
Q 004895 547 ECPQLKLFLLFAKYDSTLQ--ISDHFFEGTEELKVLDFTGIRFSPL--------------PSSLGRLINLQTLCLDGWRL 610 (724)
Q Consensus 547 ~~~~Lr~L~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~l--------------p~~i~~l~~L~~L~L~~~~l 610 (724)
.+|+|++|+++.+...... .....++++..|+.|.|.+|.+... ...+++-..||++...+|.+
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 6778888888543332222 2234567788899999999987621 12345567899999999998
Q ss_pred CC-c-----ccccCCCCCcEEEccCCcCc-----ccchhhhcCCCCCeEccCCCCCCccc----ChHHhhCCCCCcEEEc
Q 004895 611 ED-I-----AIVGQLKKLEILSLRGAEIK-----QLPLQIGQLTRLQLLDLSNCSSLVVI----APNVISKLSRLEELYM 675 (724)
Q Consensus 611 ~~-~-----~~~~~l~~L~~L~l~~~~i~-----~lp~~i~~l~~L~~L~l~~~~~l~~~----~~~~i~~l~~L~~L~l 675 (724)
.+ + ..+...+.|+.+.++.|.|. -+-..+.++++|+.|+|..|. ++.- ....+..+++|+.|++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecc
Confidence 76 2 45677789999999999765 224567899999999999853 3321 1234678889999999
Q ss_pred cCCCCccccccCCccchHHhhc-CCCCCcEEEeeccccc
Q 004895 676 GDSFSQWDKVEGGSNASLAELK-GLSKLTTLEIDVRDAE 713 (724)
Q Consensus 676 ~~~~~~~~~~~~~~~~~l~~L~-~L~~L~~L~l~~n~~~ 713 (724)
++|..... ........+. ..+.|+.|.+.+|.++
T Consensus 249 ~dcll~~~----Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 249 GDCLLENE----GAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccc----cHHHHHHHHhccCCCCceeccCcchhH
Confidence 99853222 1112223332 3579999999999753
No 202
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.14 E-value=3.9e-05 Score=66.32 Aligned_cols=75 Identities=17% Similarity=0.230 Sum_probs=37.5
Q ss_pred cccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC-cccccCCCCCcEEEccCCcCcccchh
Q 004895 564 LQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED-IAIVGQLKKLEILSLRGAEIKQLPLQ 638 (724)
Q Consensus 564 ~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~ 638 (724)
...|..+-..++.+..|++++|.+..+|..+..++.||.|+++.|.+.. |.-+..|.+|-+|+..+|.+..+|-.
T Consensus 66 k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 66 KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 3344444444445555555555555555555555555555555555443 33444455555555555544444443
No 203
>PRK07261 topology modulation protein; Provisional
Probab=97.13 E-value=0.0016 Score=61.26 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc-cCCCeEEE
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMED-NVFDKVVM 216 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~w 216 (724)
.|.|+|++|+||||||+.+....... -+.|...|
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 58899999999999999998775431 23455555
No 204
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.019 Score=59.96 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=61.1
Q ss_pred HHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecc-cchhhhhcCCCceEe
Q 004895 249 RAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRS-RDLLCIDMNSQKMFW 321 (724)
Q Consensus 249 ~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~v~~~~~~~~~~~~ 321 (724)
.+..+.+.+. .+++-++|+|+++... ..+.+...+.. ...++.+|++|.+ ..+...-.+....+.
T Consensus 116 qiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE--------Pp~~t~fiL~t~~~~~LLpTI~SRcq~i~ 187 (342)
T PRK06964 116 QVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE--------PPPGTVFLLVSARIDRLLPTILSRCRQFP 187 (342)
T ss_pred HHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC--------CCcCcEEEEEECChhhCcHHHHhcCEEEE
Confidence 3444444442 2456689999997653 33443333322 3445555555554 444333234457899
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 322 IDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 322 l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
+.+++.++..+.+... +. +. ...++..++|.|+.+..+
T Consensus 188 ~~~~~~~~~~~~L~~~-~~----~~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 188 MTVPAPEAAAAWLAAQ-GV----AD----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred ecCCCHHHHHHHHHHc-CC----Ch----HHHHHHHcCCCHHHHHHH
Confidence 9999999999988775 21 11 234678899999755433
No 205
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.0043 Score=67.47 Aligned_cols=192 Identities=15% Similarity=0.198 Sum_probs=110.8
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|.+.....|...+..++. .--...|+-|+||||+|+.++.-.--.. | .....++.=...++|..
T Consensus 12 P~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 12 PKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred cccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhc
Confidence 34456678999999999998876553 4556789999999999999988763221 1 11111221122223322
Q ss_pred hhCCC---CCC-CchhHHHHHHHHHHHh----cCCcEEEEEcccccc--ccccccccccCCCCcCCCCCCCCCcEEEE-E
Q 004895 235 DLGMN---FDS-NDLIYHRAKQLCQRLK----KEKRVLIILDNIWTK--LELDKIGIPYGDVDEKDKNDDPRRCTIIL-T 303 (724)
Q Consensus 235 ~l~~~---~~~-~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilv-T 303 (724)
.-..+ .+. .....+....+.+... .++.-+.|+|+|.-. ..|+.+.--+.. .....+.|+ |
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE--------PP~hV~FIlAT 156 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE--------PPSHVKFILAT 156 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc--------CccCeEEEEec
Confidence 21000 000 0001222334444332 345569999999654 345554333322 233445444 4
Q ss_pred ecccchhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh
Q 004895 304 SRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV 363 (724)
Q Consensus 304 tR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 363 (724)
|-...+...-.+..+.|.++.++.++....+...+..+.-..+ ++....|++..+|...
T Consensus 157 Te~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e-~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 157 TEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIE-EDALSLIARAAEGSLR 215 (515)
T ss_pred CCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccC-HHHHHHHHHHcCCChh
Confidence 4445554444566789999999999999999988864433322 4556667777777544
No 206
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.06 E-value=0.0031 Score=61.75 Aligned_cols=37 Identities=27% Similarity=0.400 Sum_probs=29.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEe
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEIT 220 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (724)
-.++|+|..|+|||||+..+..... +.|+.+++++-.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~--~~f~~I~l~t~~ 50 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLR--HKFDHIFLITPE 50 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhc--ccCCEEEEEecC
Confidence 3678999999999999999998765 458777777543
No 207
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.01 E-value=0.012 Score=69.06 Aligned_cols=176 Identities=14% Similarity=0.145 Sum_probs=94.5
Q ss_pred cccccchHHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 159 YNIFNSRKKIFQDVIEALKD-------------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
...+.|.++.++++.+.+.- ...+-+.++|++|+|||+||+.+++..... .+.++.+
T Consensus 177 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~-----~i~i~~~----- 246 (733)
T TIGR01243 177 YEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY-----FISINGP----- 246 (733)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe-----EEEEecH-----
Confidence 44577999988888776531 234578899999999999999999876421 2223221
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccCCCCcCCCC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-------------LDKIGIPYGDVDEKDKN 292 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~~ 292 (724)
++. .. .... .......+++......+.+|+||++..... ...+...+.. .
T Consensus 247 -~i~----~~----~~g~--~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~------l 309 (733)
T TIGR01243 247 -EIM----SK----YYGE--SEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDG------L 309 (733)
T ss_pred -HHh----cc----cccH--HHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhc------c
Confidence 111 10 0001 122334444444445678999999864311 0111111110 0
Q ss_pred CCCCCcEEEE-Eecccchhhhhc----CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhH
Q 004895 293 DDPRRCTIIL-TSRSRDLLCIDM----NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVA 364 (724)
Q Consensus 293 ~~~~~s~ilv-TtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 364 (724)
...+..++| ||....-..... .....+.+...+.++-.++++.........+ ......+++.+.|.--+
T Consensus 310 -~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~--d~~l~~la~~t~G~~ga 383 (733)
T TIGR01243 310 -KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAE--DVDLDKLAEVTHGFVGA 383 (733)
T ss_pred -ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCcc--ccCHHHHHHhCCCCCHH
Confidence 122333444 444332111101 1234677888888888888886553222111 12356788888887543
No 208
>PRK04132 replication factor C small subunit; Provisional
Probab=97.00 E-value=0.011 Score=68.48 Aligned_cols=157 Identities=11% Similarity=0.052 Sum_probs=95.2
Q ss_pred Ec--CCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEE
Q 004895 187 CG--MGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVL 264 (724)
Q Consensus 187 ~G--~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~L 264 (724)
.| |.++||||+|..++++.-....-..++-++.|+..+...+ ++++..+....+ +...+.-+
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~I-R~iIk~~a~~~~---------------~~~~~~KV 633 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVI-REKVKEFARTKP---------------IGGASFKI 633 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHH-HHHHHHHHhcCC---------------cCCCCCEE
Confidence 36 8899999999999998743211123677888876666544 333332211000 00124579
Q ss_pred EEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCC
Q 004895 265 IILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGES 341 (724)
Q Consensus 265 lVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~ 341 (724)
+|+|+++... ..+.+...+.. ....+++|++|.+.. +...-.+....+.+.+++.++....+...+...
T Consensus 634 vIIDEaD~Lt~~AQnALLk~lEe--------p~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E 705 (846)
T PRK04132 634 IFLDEADALTQDAQQALRRTMEM--------FSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE 705 (846)
T ss_pred EEEECcccCCHHHHHHHHHHhhC--------CCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc
Confidence 9999998763 33333322221 234556666655543 322223446789999999999998888776432
Q ss_pred CCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 342 TKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 342 ~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
.-. --++....|++.|+|.+..+..+
T Consensus 706 gi~-i~~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 706 GLE-LTEEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred CCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 211 11567889999999988554433
No 209
>PRK12377 putative replication protein; Provisional
Probab=97.00 E-value=0.0035 Score=62.27 Aligned_cols=75 Identities=20% Similarity=0.295 Sum_probs=48.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
....+.++|++|+|||+||..+++....+ ...++++++. +++..+-..... .. ....+.+.+.
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~~--g~~v~~i~~~------~l~~~l~~~~~~----~~----~~~~~l~~l~- 162 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLAK--GRSVIVVTVP------DVMSRLHESYDN----GQ----SGEKFLQELC- 162 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEHH------HHHHHHHHHHhc----cc----hHHHHHHHhc-
Confidence 34678999999999999999999998753 2336677654 455554443321 10 1123444443
Q ss_pred CCcEEEEEccccc
Q 004895 260 EKRVLIILDNIWT 272 (724)
Q Consensus 260 ~kr~LlVlDdv~~ 272 (724)
+--||||||+..
T Consensus 163 -~~dLLiIDDlg~ 174 (248)
T PRK12377 163 -KVDLLVLDEIGI 174 (248)
T ss_pred -CCCEEEEcCCCC
Confidence 457999999943
No 210
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=7.1e-05 Score=72.44 Aligned_cols=100 Identities=22% Similarity=0.236 Sum_probs=51.4
Q ss_pred CCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCcccccCCCCCcEEEccCCcCcccc--hhhhcCCCCCeEccC
Q 004895 574 TEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLP--LQIGQLTRLQLLDLS 651 (724)
Q Consensus 574 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~ 651 (724)
+.+.+.|++-||.+..+. -+.+|+.|..|.|+-|.|+.+..+..+++|+.|+|+.|.|..+- ..+.+|++|+.|.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 344455555555555331 12345556666666666666555666666666666666555442 234555566666555
Q ss_pred CCCCCcccCh----HHhhCCCCCcEEE
Q 004895 652 NCSSLVVIAP----NVISKLSRLEELY 674 (724)
Q Consensus 652 ~~~~l~~~~~----~~i~~l~~L~~L~ 674 (724)
.|.....-++ ..+.-|++|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 5433333221 1244555555554
No 211
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.99 E-value=0.0069 Score=71.13 Aligned_cols=46 Identities=37% Similarity=0.385 Sum_probs=36.8
Q ss_pred cccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 161 IFNSRKKIFQDVIEALK------DDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.++|.++.++.+.+++. ..+.+++.++|++|+|||++|+.+++...
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~ 372 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALN 372 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 35688888888887653 22345899999999999999999999874
No 212
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.98 E-value=0.00016 Score=62.67 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=69.4
Q ss_pred hcCCCCceEEEcCCCcCCCCCccccCC-CCCcEEEcCCcccCC-cccccCCCCCcEEEccCCcCcccchhhhcCCCCCeE
Q 004895 571 FEGTEELKVLDFTGIRFSPLPSSLGRL-INLQTLCLDGWRLED-IAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLL 648 (724)
Q Consensus 571 ~~~l~~L~~L~l~~~~~~~lp~~i~~l-~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 648 (724)
+.....|...+|++|.+.++|+.+... +-+..|+|++|.+++ |..+..++.|+.|+++.|.+...|.-|..|.+|-.|
T Consensus 49 l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDML 128 (177)
T ss_pred HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHh
Confidence 345567788888999888888876544 478888888888888 667888888888888888888888888888888888
Q ss_pred ccCCCCCCcccCh
Q 004895 649 DLSNCSSLVVIAP 661 (724)
Q Consensus 649 ~l~~~~~l~~~~~ 661 (724)
+..+ +....++-
T Consensus 129 ds~~-na~~eid~ 140 (177)
T KOG4579|consen 129 DSPE-NARAEIDV 140 (177)
T ss_pred cCCC-CccccCcH
Confidence 8777 34444543
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.97 E-value=0.0047 Score=59.27 Aligned_cols=88 Identities=23% Similarity=0.287 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCCCCC---CCchhHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGMNFD---SNDLIYHRAKQLCQR 256 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~~~---~~~~~~~~~~~l~~~ 256 (724)
++|+.++|+.|+||||.+.+++.....+ -..+..++.... ....+-++..++.++.+.. ......+...+..+.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 3689999999999999999999888754 344677775422 2445566778888886532 111122233333333
Q ss_pred HhcCCcEEEEEccc
Q 004895 257 LKKEKRVLIILDNI 270 (724)
Q Consensus 257 l~~~kr~LlVlDdv 270 (724)
...++.=++++|=.
T Consensus 79 ~~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 79 FRKKGYDLVLIDTA 92 (196)
T ss_dssp HHHTTSSEEEEEE-
T ss_pred HhhcCCCEEEEecC
Confidence 33223347777765
No 214
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.96 E-value=0.01 Score=69.17 Aligned_cols=165 Identities=19% Similarity=0.223 Sum_probs=88.8
Q ss_pred cccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALK------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
..+|.++.++.|+++|. .....++.++|++|+||||+|+.++...... | +-++.+...+..++...-..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~--~---~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRK--Y---VRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCC--E---EEEEcCCCCCHHHhccchhc
Confidence 35699999999988875 1345689999999999999999999866421 2 22444444444333221111
Q ss_pred hhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-c-----cccccccCCCCc---C----CCCCCCCCcEEE
Q 004895 235 DLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-L-----DKIGIPYGDVDE---K----DKNDDPRRCTII 301 (724)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-~-----~~l~~~~~~~~~---~----~~~~~~~~s~il 301 (724)
..+.. .......+... ...+-+++||+++.... . ..+...+..-.. . ...-.-....+|
T Consensus 398 ~~g~~------~G~~~~~l~~~--~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 398 YIGSM------PGKLIQKMAKV--GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred cCCCC------CcHHHHHHHhc--CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 11110 11112222211 11334789999965421 0 111100000000 0 000012344566
Q ss_pred EEecccchhhhhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 302 LTSRSRDLLCIDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 302 vTtR~~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
.|+.+..+..........+.+.+++++|-.++.+++.
T Consensus 470 ~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 470 ATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 6665554433334445688999999999998887765
No 215
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.96 E-value=0.0046 Score=60.40 Aligned_cols=89 Identities=18% Similarity=0.215 Sum_probs=54.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhh-C---CC-----CCCCchhHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDL-G---MN-----FDSNDLIYHRA 250 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l-~---~~-----~~~~~~~~~~~ 250 (724)
.-+++.|+|++|+|||++|.+++...... -..++|++... ++...+.+ +++.. . .. ...........
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 86 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ-IAEDRPERALSNFIVFEVFDFDEQGVAI 86 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH-HHHhChHHHhcCEEEEECCCHHHHHHHH
Confidence 35799999999999999999998876532 45789999876 66555543 33321 0 00 00101011224
Q ss_pred HHHHHHHhcCCcEEEEEccccc
Q 004895 251 KQLCQRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 251 ~~l~~~l~~~kr~LlVlDdv~~ 272 (724)
..+...+...+.-+||+|.+..
T Consensus 87 ~~l~~~~~~~~~~lvVIDSis~ 108 (209)
T TIGR02237 87 QKTSKFIDRDSASLVVVDSFTA 108 (209)
T ss_pred HHHHHHHhhcCccEEEEeCcHH
Confidence 4444444444566899999843
No 216
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.94 E-value=0.012 Score=59.18 Aligned_cols=169 Identities=18% Similarity=0.211 Sum_probs=96.4
Q ss_pred ccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCC-CeEEEEEEecCCCh-HHHHHHHH
Q 004895 160 NIFNSRKKIFQDVIEALK----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVF-DKVVMAEITKNPDA-QKIQGELA 233 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~-~~l~~~i~ 233 (724)
..++|-.++-..+-.++. .++..-+.|+||.|.|||+|...+..+.+ .| ...+-|...+..-. .-.++.|.
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q---~~~E~~l~v~Lng~~~~dk~al~~I~ 100 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQ---ENGENFLLVRLNGELQTDKIALKGIT 100 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHH---hcCCeEEEEEECccchhhHHHHHHHH
Confidence 345677777777766665 35556778999999999999999888832 23 23444555554332 22345555
Q ss_pred HhhC----CCCCCCchhHHHHHHHHHHHhc-----CCcEEEEEcccccccc-------ccccccccCCCCcCCCCCCCCC
Q 004895 234 SDLG----MNFDSNDLIYHRAKQLCQRLKK-----EKRVLIILDNIWTKLE-------LDKIGIPYGDVDEKDKNDDPRR 297 (724)
Q Consensus 234 ~~l~----~~~~~~~~~~~~~~~l~~~l~~-----~kr~LlVlDdv~~~~~-------~~~l~~~~~~~~~~~~~~~~~~ 297 (724)
+++. ........-.+....+...|.. +-++.+|+|.++-... ++-+...-.. ..+-
T Consensus 101 rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~--------r~Pi 172 (408)
T KOG2228|consen 101 RQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSA--------RAPI 172 (408)
T ss_pred HHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhc--------CCCe
Confidence 5542 2211111123455666666653 2358888888754311 1111111111 4566
Q ss_pred cEEEEEecccchh------hhhcCCCceEecCCCCHHHHHHHHHHHhC
Q 004895 298 CTIILTSRSRDLL------CIDMNSQKMFWIDALSEEEALQLFEKIVG 339 (724)
Q Consensus 298 s~ilvTtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 339 (724)
|-|.+|||-.... ........++-++.++-++...++++...
T Consensus 173 ciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 173 CIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred EEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 7788999975432 11123333555677788888888877653
No 217
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.92 E-value=0.0051 Score=61.30 Aligned_cols=92 Identities=22% Similarity=0.251 Sum_probs=57.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccC----CCeEEEEEEecCCChHHHHHHHHHhhCCCCC------------CC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV----FDKVVMAEITKNPDAQKIQGELASDLGMNFD------------SN 243 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~------------~~ 243 (724)
.-.++.|+|++|+|||+||.+++........ -..++|++..+.++..++ .++++..+.... ..
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCCH
Confidence 3469999999999999999999865332211 256899998887766554 344444332211 00
Q ss_pred chhHHHHHHHHHHHhcC-CcEEEEEccccc
Q 004895 244 DLIYHRAKQLCQRLKKE-KRVLIILDNIWT 272 (724)
Q Consensus 244 ~~~~~~~~~l~~~l~~~-kr~LlVlDdv~~ 272 (724)
.........+...+.+. +.-+||+|.+..
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSis~ 126 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSVTA 126 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCcHH
Confidence 00122334444555545 778999999854
No 218
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.89 E-value=0.00043 Score=67.01 Aligned_cols=57 Identities=32% Similarity=0.478 Sum_probs=26.4
Q ss_pred CCCCCcEEEcCCcc--cCC--cccccCCCCCcEEEccCCcCc---ccchhhhcCCCCCeEccCCC
Q 004895 596 RLINLQTLCLDGWR--LED--IAIVGQLKKLEILSLRGAEIK---QLPLQIGQLTRLQLLDLSNC 653 (724)
Q Consensus 596 ~l~~L~~L~L~~~~--l~~--~~~~~~l~~L~~L~l~~~~i~---~lp~~i~~l~~L~~L~l~~~ 653 (724)
.|++|++|.++.|. +.. ....-.+++|++|++++|+++ ++++ +..+.+|..|++..|
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~ 126 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNC 126 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccC
Confidence 44555555555552 222 122233355555555555444 2221 344455555555554
No 219
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.88 E-value=0.00093 Score=58.82 Aligned_cols=23 Identities=39% Similarity=0.674 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
||.|+|++|+||||+|+.+.+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999876
No 220
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.00058 Score=66.94 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=18.1
Q ss_pred cchHHhhcCCCCCcEEEeecccc
Q 004895 690 NASLAELKGLSKLTTLEIDVRDA 712 (724)
Q Consensus 690 ~~~l~~L~~L~~L~~L~l~~n~~ 712 (724)
..++.+|.++++|+.|.++.+.+
T Consensus 239 wasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 239 WASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred HHHHHHHcCCchhheeeccCCcc
Confidence 44678888889999888887764
No 221
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.81 E-value=0.002 Score=66.79 Aligned_cols=47 Identities=21% Similarity=0.359 Sum_probs=40.7
Q ss_pred cccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 161 IFNSRKKIFQDVIEALK------DDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.++|.++.++++++++. ....+++.++|++|+||||||+.+++....
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 57899999999999886 234578999999999999999999998864
No 222
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.0032 Score=71.27 Aligned_cols=161 Identities=20% Similarity=0.291 Sum_probs=95.7
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCC----eEEEEEEecCCChHHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFD----KVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~vs~~~~~~~l~~~i 232 (724)
...++++||++|+.++++.|....-.--.++|.+|+|||+++.-++.+.-...-.. ..++. + ++ ..+
T Consensus 167 gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~s-L----D~----g~L 237 (786)
T COG0542 167 GKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYS-L----DL----GSL 237 (786)
T ss_pred CCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEE-e----cH----HHH
Confidence 34567889999999999999743323335789999999999999988875432211 11110 0 11 111
Q ss_pred HHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--------ccccccccCCCCcCCCCCCCCC-cE-EEE
Q 004895 233 ASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--------LDKIGIPYGDVDEKDKNDDPRR-CT-IIL 302 (724)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--------~~~l~~~~~~~~~~~~~~~~~~-s~-ilv 302 (724)
.. |.+...+ -++....+.+.+.+.++..|++|.+..... .+.-...-|. -..| -+ |-.
T Consensus 238 vA--GakyRGe--FEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPa--------LARGeL~~IGA 305 (786)
T COG0542 238 VA--GAKYRGE--FEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPA--------LARGELRCIGA 305 (786)
T ss_pred hc--cccccCc--HHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHH--------HhcCCeEEEEe
Confidence 11 2222222 355667777777766689999999976421 1111111111 1222 23 556
Q ss_pred Eecccchh-----hhhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 303 TSRSRDLL-----CIDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 303 TtR~~~v~-----~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
||-++.-- .......+.+.+..-+.+++..+++...
T Consensus 306 TT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 306 TTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred ccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 66554320 1123456789999999999999988764
No 223
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.80 E-value=0.063 Score=56.39 Aligned_cols=43 Identities=28% Similarity=0.499 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 166 KKIFQDVIEALKD---DKLNIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 166 ~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
+...+.|.+.+.+ ....+|+|.|.=|+||||+.+.+.+.....
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3445566666653 567899999999999999999999988764
No 224
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.77 E-value=0.0026 Score=70.00 Aligned_cols=75 Identities=25% Similarity=0.366 Sum_probs=54.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
.-+++.++|++|+||||||+.++++.. | .++=|++|+..+...+-..|...+....-.. ..
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~l~--------------ad 385 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSVLD--------------AD 385 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccccc--------------cC
Confidence 457999999999999999999998653 2 2677889988887777666655543221110 12
Q ss_pred CCcEEEEEcccccc
Q 004895 260 EKRVLIILDNIWTK 273 (724)
Q Consensus 260 ~kr~LlVlDdv~~~ 273 (724)
+++..||+|.++..
T Consensus 386 srP~CLViDEIDGa 399 (877)
T KOG1969|consen 386 SRPVCLVIDEIDGA 399 (877)
T ss_pred CCcceEEEecccCC
Confidence 57888999998754
No 225
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.016 Score=60.84 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=78.7
Q ss_pred ccchHHHHHHHHHHhc-CCCccE-EEEEcCCCCcHHHHHHHHHHHHhhcc-------------------CCCeEEEEEEe
Q 004895 162 FNSRKKIFQDVIEALK-DDKLNI-IGVCGMGGVGKTTLVKQIAKQVMEDN-------------------VFDKVVMAEIT 220 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~-~~~~~v-i~I~G~gGiGKTtLa~~v~~~~~~~~-------------------~F~~~~wv~vs 220 (724)
++|-+.....+..+.. .++.+- +.++|+.|+||||+|..+++...... ....+..++.+
T Consensus 3 ~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s 82 (325)
T COG0470 3 LVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPS 82 (325)
T ss_pred cccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEeccc
Confidence 3456666777777766 344444 99999999999999999999875322 12334555555
Q ss_pred cCCC---hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccCCCCcCCCCCCC
Q 004895 221 KNPD---AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--LDKIGIPYGDVDEKDKNDDP 295 (724)
Q Consensus 221 ~~~~---~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~~~~~~~~~ 295 (724)
+... ..+..+++.+....... .++.-++++|+++.... -+.+...+.. ..
T Consensus 83 ~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEe--------p~ 137 (325)
T COG0470 83 DLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEE--------PP 137 (325)
T ss_pred ccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhcc--------CC
Confidence 4444 23333333333322111 24668999999976532 2222222222 34
Q ss_pred CCcEEEEEecccc-hhhhhcCCCceEecCCCC
Q 004895 296 RRCTIILTSRSRD-LLCIDMNSQKMFWIDALS 326 (724)
Q Consensus 296 ~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~ 326 (724)
..+.+|++|.... +...-.+....+++.+.+
T Consensus 138 ~~~~~il~~n~~~~il~tI~SRc~~i~f~~~~ 169 (325)
T COG0470 138 KNTRFILITNDPSKILPTIRSRCQRIRFKPPS 169 (325)
T ss_pred CCeEEEEEcCChhhccchhhhcceeeecCCch
Confidence 5566777776433 322223344567776633
No 226
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.76 E-value=0.007 Score=60.64 Aligned_cols=81 Identities=23% Similarity=0.345 Sum_probs=52.8
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHH
Q 004895 172 VIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAK 251 (724)
Q Consensus 172 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~ 251 (724)
+.+++. +..-+.++|.+|+|||.||..+.++.. +..+ .+.++++ .+++.++...... .. ...
T Consensus 98 ~~~~~~--~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~-sv~f~~~------~el~~~Lk~~~~~----~~----~~~ 159 (254)
T COG1484 98 LVEFFE--RGENLVLLGPPGVGKTHLAIAIGNELL-KAGI-SVLFITA------PDLLSKLKAAFDE----GR----LEE 159 (254)
T ss_pred HHHHhc--cCCcEEEECCCCCcHHHHHHHHHHHHH-HcCC-eEEEEEH------HHHHHHHHHHHhc----Cc----hHH
Confidence 334443 566789999999999999999999987 4333 3566654 3566666655442 11 223
Q ss_pred HHHHHHhcCCcEEEEEccccc
Q 004895 252 QLCQRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 252 ~l~~~l~~~kr~LlVlDdv~~ 272 (724)
++.+.+. +-=||||||+-.
T Consensus 160 ~l~~~l~--~~dlLIiDDlG~ 178 (254)
T COG1484 160 KLLRELK--KVDLLIIDDIGY 178 (254)
T ss_pred HHHHHhh--cCCEEEEecccC
Confidence 3444343 345999999954
No 227
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.74 E-value=0.0032 Score=74.10 Aligned_cols=106 Identities=15% Similarity=0.262 Sum_probs=61.0
Q ss_pred ccccchHHHHHHHHHHhc-------C--CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHH
Q 004895 160 NIFNSRKKIFQDVIEALK-------D--DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQG 230 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~-------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 230 (724)
..++|.+..++.+.+.+. + ....++.++|+.|+|||.+|+.++...... ....+-++++..... .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~--~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGG--EQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCC--CcceEEEeHHHhhhh----h
Confidence 346799988888888764 1 134578999999999999999998876421 222333343322111 1
Q ss_pred HHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 231 ELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
.+.+-+|.+..-.. ......+.+.+++....+|+||++...
T Consensus 640 ~~~~l~g~~~gyvg--~~~~g~L~~~v~~~p~svvllDEieka 680 (852)
T TIGR03345 640 TVSRLKGSPPGYVG--YGEGGVLTEAVRRKPYSVVLLDEVEKA 680 (852)
T ss_pred hhccccCCCCCccc--ccccchHHHHHHhCCCcEEEEechhhc
Confidence 11122332221110 011123444555556789999999654
No 228
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.72 E-value=0.0026 Score=60.06 Aligned_cols=75 Identities=25% Similarity=0.357 Sum_probs=45.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
...-+.++|+.|+|||.||..+.+....+ .+ .+.|+++ .+++..+-. ...... ...+.+.+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~-g~-~v~f~~~------~~L~~~l~~----~~~~~~-----~~~~~~~l~- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK-GY-SVLFITA------SDLLDELKQ----SRSDGS-----YEELLKRLK- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT-T---EEEEEH------HHHHHHHHC----CHCCTT-----HCHHHHHHH-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC-Cc-ceeEeec------Cceeccccc----cccccc-----hhhhcCccc-
Confidence 34579999999999999999999987653 22 3667754 345555432 211111 123344554
Q ss_pred CCcEEEEEcccccc
Q 004895 260 EKRVLIILDNIWTK 273 (724)
Q Consensus 260 ~kr~LlVlDdv~~~ 273 (724)
+-=||||||+...
T Consensus 108 -~~dlLilDDlG~~ 120 (178)
T PF01695_consen 108 -RVDLLILDDLGYE 120 (178)
T ss_dssp -TSSCEEEETCTSS
T ss_pred -cccEeccccccee
Confidence 3458889999543
No 229
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.0085 Score=66.44 Aligned_cols=95 Identities=15% Similarity=0.273 Sum_probs=66.7
Q ss_pred ccccccchHHHHHHHHHHhc---------CC---CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 158 DYNIFNSRKKIFQDVIEALK---------DD---KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~---------~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
...++-|-++.+..|.+.+. .. +.+-|.++|++|.|||-+|++|+.+..- -|++|-+.
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-------~FlSVKGP--- 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-------NFLSVKGP--- 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhcee-------eEEeecCH---
Confidence 34556677888888887764 11 2457889999999999999999987754 35666543
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
+++.-- +|. .++...+++++-+..++|+|++|.+++.
T Consensus 740 -ELLNMY---VGq-------SE~NVR~VFerAR~A~PCVIFFDELDSl 776 (953)
T KOG0736|consen 740 -ELLNMY---VGQ-------SEENVREVFERARSAAPCVIFFDELDSL 776 (953)
T ss_pred -HHHHHH---hcc-------hHHHHHHHHHHhhccCCeEEEecccccc
Confidence 222211 111 3456777888878889999999999764
No 230
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.71 E-value=0.052 Score=53.19 Aligned_cols=207 Identities=12% Similarity=0.151 Sum_probs=115.7
Q ss_pred ccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhc----cCCCeEEEEEEecC----------C--
Q 004895 160 NIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMED----NVFDKVVMAEITKN----------P-- 223 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~----------~-- 223 (724)
....++++....+......++.+-..++|+.|.||-|.+..+.++.-.. -.-+...|.+-|.. .
T Consensus 13 ~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHl 92 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHL 92 (351)
T ss_pred hhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceE
Confidence 3455677777777766556778899999999999999999988876421 11233445443332 1
Q ss_pred ---------ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcE-EEEEcccccc--ccccccccccCCCCcCCC
Q 004895 224 ---------DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRV-LIILDNIWTK--LELDKIGIPYGDVDEKDK 291 (724)
Q Consensus 224 ---------~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~~~~ 291 (724)
.-.-+.++|++......+- -. ...+.| ++|+-.+++. +.-..++.-...
T Consensus 93 EitPSDaG~~DRvViQellKevAQt~qi-----------e~--~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk------ 153 (351)
T KOG2035|consen 93 EITPSDAGNYDRVVIQELLKEVAQTQQI-----------ET--QGQRPFKVVVINEADELTRDAQHALRRTMEK------ 153 (351)
T ss_pred EeChhhcCcccHHHHHHHHHHHHhhcch-----------hh--ccccceEEEEEechHhhhHHHHHHHHHHHHH------
Confidence 1122344444433221110 00 112344 5555555432 111111111111
Q ss_pred CCCCCCcEEEEEecccc--hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCC-CCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 292 NDDPRRCTIILTSRSRD--LLCIDMNSQKMFWIDALSEEEALQLFEKIVGEST-KASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~~~--v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
-...+|+|+..-+-+ +.+. .+..-.++++..+++|....+++.+..+. .-| .+++.+|+++++|.-.-.-.+
T Consensus 154 --Ys~~~RlIl~cns~SriIepI-rSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllm 228 (351)
T KOG2035|consen 154 --YSSNCRLILVCNSTSRIIEPI-RSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLM 228 (351)
T ss_pred --HhcCceEEEEecCcccchhHH-hhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHH
Confidence 123566666544432 2121 22234678999999999999999885332 223 689999999999876444444
Q ss_pred HHHhc--CC---------CHHHHHHHHHHHhcC
Q 004895 369 ANALK--NK---------SPAIWKDALNKLTSS 390 (724)
Q Consensus 369 ~~~l~--~~---------~~~~w~~~~~~l~~~ 390 (724)
-...+ +. ..-+|+-++.+....
T Consensus 229 lE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 229 LEAVRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HHHHHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 33333 11 456898888775543
No 231
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.02 Score=54.91 Aligned_cols=156 Identities=13% Similarity=0.180 Sum_probs=86.7
Q ss_pred ccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHH
Q 004895 162 FNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKI 228 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l 228 (724)
+-|-++.+++|.+.+. -.+.+-+.++|++|.|||-||+.|+++. .+.|+.||+. ++
T Consensus 149 iGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs----el 217 (404)
T KOG0728|consen 149 IGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS----EL 217 (404)
T ss_pred hccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----HH
Confidence 3355666666555443 1346678899999999999999998754 3557777763 33
Q ss_pred HHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccc--cc-------c-ccccCCCCcCCCCCCCCCc
Q 004895 229 QGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLEL--DK-------I-GIPYGDVDEKDKNDDPRRC 298 (724)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~--~~-------l-~~~~~~~~~~~~~~~~~~s 298 (724)
.+..+-. .......++---+.--+..|+.|.+++...- +. + ...+..+.+++.+-..+.-
T Consensus 218 vqk~ige----------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 218 VQKYIGE----------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHHhhh----------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 3222110 1122333333333345788999988664210 00 0 0111112233344456777
Q ss_pred EEEEEecccchhhh----hcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 299 TIILTSRSRDLLCI----DMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 299 ~ilvTtR~~~v~~~----~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
+||+.|..-++... .......++.++-+++.-.++++-+.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 88888877665411 11223466777777776666666543
No 232
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.66 E-value=0.0012 Score=64.01 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=63.6
Q ss_pred cCCCCCcEEEcCCcccCCcccccCCCCCcEEEccCC--cCc-ccchhhhcCCCCCeEccCCCCC--CcccChHHhhCCCC
Q 004895 595 GRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGA--EIK-QLPLQIGQLTRLQLLDLSNCSS--LVVIAPNVISKLSR 669 (724)
Q Consensus 595 ~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~--~i~-~lp~~i~~l~~L~~L~l~~~~~--l~~~~~~~i~~l~~ 669 (724)
-.+..|++|++.++.++....+-.|++|++|+++.| ++. .++.-..++++|++|++++|.. +..+.| +..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcc
Confidence 445667777788877777778888999999999999 555 6666667779999999999532 334444 578888
Q ss_pred CcEEEccCCC
Q 004895 670 LEELYMGDSF 679 (724)
Q Consensus 670 L~~L~l~~~~ 679 (724)
|..|++.+|.
T Consensus 118 L~~Ldl~n~~ 127 (260)
T KOG2739|consen 118 LKSLDLFNCS 127 (260)
T ss_pred hhhhhcccCC
Confidence 8899988874
No 233
>PRK06696 uridine kinase; Validated
Probab=96.65 E-value=0.0029 Score=62.39 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=36.7
Q ss_pred chHHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 164 SRKKIFQDVIEALK---DDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 164 gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.|++.+++|.+.+. .+...+|+|.|.+|+||||||+.+.+....
T Consensus 2 ~~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 2 SRKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred cHHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46777788887764 456789999999999999999999998754
No 234
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.005 Score=65.29 Aligned_cols=88 Identities=25% Similarity=0.308 Sum_probs=58.5
Q ss_pred hHHHHHHHHHHhcCC--------C-ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 165 RKKIFQDVIEALKDD--------K-LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 165 R~~~~~~l~~~L~~~--------~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
-+.|+++|++.|.++ + .+-|.++|++|.|||-||+.|+-...+- | |......|+ ++.-.
T Consensus 312 AK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP--F----F~~sGSEFd------Em~VG 379 (752)
T KOG0734|consen 312 AKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP--F----FYASGSEFD------EMFVG 379 (752)
T ss_pred HHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC--e----Eeccccchh------hhhhc
Confidence 445788889998743 2 4578899999999999999999877653 1 222222333 22211
Q ss_pred hCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 236 LGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 236 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
. ....+..|+..-+..-+|+|++|.++..
T Consensus 380 v---------GArRVRdLF~aAk~~APcIIFIDEiDav 408 (752)
T KOG0734|consen 380 V---------GARRVRDLFAAAKARAPCIIFIDEIDAV 408 (752)
T ss_pred c---------cHHHHHHHHHHHHhcCCeEEEEechhhh
Confidence 1 1234556666666678999999999754
No 235
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.64 E-value=0.009 Score=61.73 Aligned_cols=91 Identities=21% Similarity=0.231 Sum_probs=57.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc----cCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC---------Cchh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMED----NVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS---------NDLI 246 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~---------~~~~ 246 (724)
.-+++-|+|++|+|||+|+.+++-..... ..=..++||+..+.++.+++. ++++.++...+. ....
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~d~~~~l~~i~~~~~~~~ 173 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGVDPDAVLDNILYARAYTS 173 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCCChHHhcCcEEEecCCCH
Confidence 34688999999999999999877543211 112368999999988888774 567777654221 0001
Q ss_pred H---HHHHHHHHHHhcCCcEEEEEcccc
Q 004895 247 Y---HRAKQLCQRLKKEKRVLIILDNIW 271 (724)
Q Consensus 247 ~---~~~~~l~~~l~~~kr~LlVlDdv~ 271 (724)
+ +....+...+...+--|||+|.+-
T Consensus 174 e~~~~~l~~l~~~i~~~~~~LvVIDSis 201 (313)
T TIGR02238 174 EHQMELLDYLAAKFSEEPFRLLIVDSIM 201 (313)
T ss_pred HHHHHHHHHHHHHhhccCCCEEEEEcch
Confidence 1 122333334444455689999884
No 236
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.025 Score=62.45 Aligned_cols=97 Identities=23% Similarity=0.330 Sum_probs=63.9
Q ss_pred ccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 162 FNSRKKIFQDVIEALK------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
-+|.++.++.|++.+. +.+-+++..+||+|+|||++|+.++.....+ + +-++|++-.|..+|-..=-..
T Consensus 413 HYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk-F----fRfSvGG~tDvAeIkGHRRTY 487 (906)
T KOG2004|consen 413 HYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK-F----FRFSVGGMTDVAEIKGHRRTY 487 (906)
T ss_pred ccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc-e----EEEeccccccHHhhcccceee
Confidence 3488999999999875 3456799999999999999999999987532 2 356777777776652111111
Q ss_pred hCCCCCCCchhHHHHHHHHHHHh--cCCcEEEEEcccccc
Q 004895 236 LGMNFDSNDLIYHRAKQLCQRLK--KEKRVLIILDNIWTK 273 (724)
Q Consensus 236 l~~~~~~~~~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 273 (724)
+|. .-.++.+.|+ +..+=|+.||.|+..
T Consensus 488 VGA----------MPGkiIq~LK~v~t~NPliLiDEvDKl 517 (906)
T KOG2004|consen 488 VGA----------MPGKIIQCLKKVKTENPLILIDEVDKL 517 (906)
T ss_pred ecc----------CChHHHHHHHhhCCCCceEEeehhhhh
Confidence 111 1123334443 234568999998653
No 237
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.015 Score=64.93 Aligned_cols=157 Identities=17% Similarity=0.183 Sum_probs=84.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
..+.+.++|++|.|||.||+.+++..... ++.+... +++... +| + .+.....++..-.+
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~-------fi~v~~~----~l~sk~---vG-----e--sek~ir~~F~~A~~ 333 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSR-------FISVKGS----ELLSKW---VG-----E--SEKNIRELFEKARK 333 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCe-------EEEeeCH----HHhccc---cc-----h--HHHHHHHHHHHHHc
Confidence 45689999999999999999999965432 2333221 111110 11 1 23344455555455
Q ss_pred CCcEEEEEcccccccccccc----------ccccCCCCcCCCCCCCCCcEEEEEecccchhhhh----cCCCceEecCCC
Q 004895 260 EKRVLIILDNIWTKLELDKI----------GIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCID----MNSQKMFWIDAL 325 (724)
Q Consensus 260 ~kr~LlVlDdv~~~~~~~~l----------~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~----~~~~~~~~l~~L 325 (724)
..++.|++|+++....+..- ...+.. .+......+..||-||-........ ..-...+.+++-
T Consensus 334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~---~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~p 410 (494)
T COG0464 334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTE---LDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLP 410 (494)
T ss_pred CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHH---hcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCC
Confidence 68899999999765322211 000000 0111133344455555554432111 123457888888
Q ss_pred CHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCC
Q 004895 326 SEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGG 360 (724)
Q Consensus 326 ~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G 360 (724)
+.++..+.|+.+.......-.-.-..+++++.+.|
T Consensus 411 d~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 411 DLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred CHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 99999999999886332211112234455555554
No 238
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.62 E-value=0.015 Score=57.60 Aligned_cols=89 Identities=16% Similarity=0.303 Sum_probs=52.8
Q ss_pred HHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCch
Q 004895 168 IFQDVIEALKD--DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDL 245 (724)
Q Consensus 168 ~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~ 245 (724)
.+..+.+...+ .....+.++|.+|+|||+||..+++.....+ ..++++++ .+++..+-..... ...
T Consensus 84 al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it~------~~l~~~l~~~~~~--~~~-- 151 (244)
T PRK07952 84 ALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIITV------ADIMSAMKDTFSN--SET-- 151 (244)
T ss_pred HHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEEH------HHHHHHHHHHHhh--ccc--
Confidence 44444444432 2345788999999999999999999886532 34566643 4555554443321 111
Q ss_pred hHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 246 IYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 246 ~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
....+.+.+. +.=+|||||+...
T Consensus 152 ---~~~~~l~~l~--~~dlLvIDDig~~ 174 (244)
T PRK07952 152 ---SEEQLLNDLS--NVDLLVIDEIGVQ 174 (244)
T ss_pred ---cHHHHHHHhc--cCCEEEEeCCCCC
Confidence 1123444454 3458899999543
No 239
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.60 E-value=0.0082 Score=56.82 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEE
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMA 217 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 217 (724)
...+|.++|+.|+||||+|+.+++.... .+..++++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~~--~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLKL--KYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHH--cCCcEEEE
Confidence 4569999999999999999999998864 24555555
No 240
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.59 E-value=0.01 Score=61.12 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=55.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC-----CCchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD-----SNDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 254 (724)
.-+++-|+|++|+||||||.+++...... -..++|++..+.++.. .+++++...+ .....++....+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34699999999999999999988776532 3457899877665542 4555554311 1111233333333
Q ss_pred HHHhcCCcEEEEEccccc
Q 004895 255 QRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~~ 272 (724)
..+..+..-++|+|-+-.
T Consensus 127 ~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred HHhhccCCcEEEEcchhh
Confidence 334445677999999853
No 241
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.011 Score=62.04 Aligned_cols=88 Identities=17% Similarity=0.169 Sum_probs=53.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
..++.++|+.|+||||++.+++.....+.....+..++.... ....+-++...+.++.+........+. ......+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l-~~~l~~l~- 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDL-QLALAELR- 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccH-HHHHHHhc-
Confidence 469999999999999999999988653322234666654322 234555666677777654322211122 22233333
Q ss_pred CCcEEEEEcccc
Q 004895 260 EKRVLIILDNIW 271 (724)
Q Consensus 260 ~kr~LlVlDdv~ 271 (724)
+.-++++|..-
T Consensus 215 -~~DlVLIDTaG 225 (374)
T PRK14722 215 -NKHMVLIDTIG 225 (374)
T ss_pred -CCCEEEEcCCC
Confidence 34567799884
No 242
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.59 E-value=0.0051 Score=71.02 Aligned_cols=102 Identities=18% Similarity=0.265 Sum_probs=60.0
Q ss_pred cccchHHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALKD---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
.++|.++.++.+.+.+.. .....+.++|++|+|||++|+.++..... ..+.+++++..... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~-----~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGI-----ELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCC-----CcEEeechhhcccc----c
Confidence 367888888888877651 12457889999999999999999887731 23455555432211 1
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
+.+-+|.+..... ......+.+.+......+|+||+++..
T Consensus 530 ~~~LiG~~~gyvg--~~~~g~L~~~v~~~p~sVlllDEieka 569 (758)
T PRK11034 530 VSRLIGAPPGYVG--FDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_pred HHHHcCCCCCccc--ccccchHHHHHHhCCCcEEEeccHhhh
Confidence 2222332211100 011122334444445679999999765
No 243
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.57 E-value=0.019 Score=67.88 Aligned_cols=105 Identities=18% Similarity=0.276 Sum_probs=59.5
Q ss_pred cccchHHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALKD-------D--KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
.++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+++..... -...+.++++.... .. .
T Consensus 569 ~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~--~~~~i~id~se~~~-~~---~ 642 (857)
T PRK10865 569 RVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS--DDAMVRIDMSEFME-KH---S 642 (857)
T ss_pred eEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC--CCcEEEEEhHHhhh-hh---h
Confidence 467888888888777641 1 12478899999999999999999866321 12345555543221 11 1
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
+.+-+|.+..... ......+.+.+.....-+|+|||+...
T Consensus 643 ~~~LiG~~pgy~g--~~~~g~l~~~v~~~p~~vLllDEieka 682 (857)
T PRK10865 643 VSRLVGAPPGYVG--YEEGGYLTEAVRRRPYSVILLDEVEKA 682 (857)
T ss_pred HHHHhCCCCcccc--cchhHHHHHHHHhCCCCeEEEeehhhC
Confidence 1222332221111 011122334444334479999999754
No 244
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.57 E-value=0.012 Score=58.22 Aligned_cols=55 Identities=25% Similarity=0.246 Sum_probs=38.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDN----VFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
.-.++.|+|++|+|||+||.+++....... .=..++|++....++...+. .+.+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~ 76 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVR 76 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHH
Confidence 356999999999999999999987654221 01458899987777765543 34443
No 245
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.019 Score=55.59 Aligned_cols=130 Identities=15% Similarity=0.216 Sum_probs=73.2
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 159 YNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
...+-|=++.+++|.+... -+..+-|.++|++|.|||-+|+.|+|+... .|+.|-+.
T Consensus 176 y~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda-------cfirvigs--- 245 (435)
T KOG0729|consen 176 YSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA-------CFIRVIGS--- 245 (435)
T ss_pred cccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc-------eEEeehhH---
Confidence 3445567777777766543 134567889999999999999999987643 23333211
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--cc-------cc-ccccCCCCcCCCCCCC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--LD-------KI-GIPYGDVDEKDKNDDP 295 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~-------~l-~~~~~~~~~~~~~~~~ 295 (724)
++.+.. .|. .......+++--+.+|-|+|++|.++.... ++ ++ ...+..+.+++.+...
T Consensus 246 -elvqky---vge-------garmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr 314 (435)
T KOG0729|consen 246 -ELVQKY---VGE-------GARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR 314 (435)
T ss_pred -HHHHHH---hhh-------hHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC
Confidence 222211 110 223445556555667889999999854310 00 00 0011111222333344
Q ss_pred CCcEEEEEecccch
Q 004895 296 RRCTIILTSRSRDL 309 (724)
Q Consensus 296 ~~s~ilvTtR~~~v 309 (724)
..-+|++.|...+.
T Consensus 315 gnikvlmatnrpdt 328 (435)
T KOG0729|consen 315 GNIKVLMATNRPDT 328 (435)
T ss_pred CCeEEEeecCCCCC
Confidence 56689988877654
No 246
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.35 Score=51.18 Aligned_cols=161 Identities=17% Similarity=0.199 Sum_probs=84.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK 261 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 261 (724)
+--.++||+|.|||++..++++... ||. .=..++...+-.+ + .+|... ...
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~----ydI-ydLeLt~v~~n~d-L---------------------r~LL~~--t~~ 286 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLN----YDI-YDLELTEVKLDSD-L---------------------RHLLLA--TPN 286 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcC----Cce-EEeeeccccCcHH-H---------------------HHHHHh--CCC
Confidence 3457899999999999999999774 432 2233332222111 2 222221 135
Q ss_pred cEEEEEccccccccccccc-------------ccc-CCCCcCCCCCCCC--CcEEEEEecccchh---hhh-cCCCceEe
Q 004895 262 RVLIILDNIWTKLELDKIG-------------IPY-GDVDEKDKNDDPR--RCTIILTSRSRDLL---CID-MNSQKMFW 321 (724)
Q Consensus 262 r~LlVlDdv~~~~~~~~l~-------------~~~-~~~~~~~~~~~~~--~s~ilvTtR~~~v~---~~~-~~~~~~~~ 321 (724)
+-+||+.|++...+...-. ..+ +-+.-.++.+.++ .--|+.||-..+-. -.. ..-...+.
T Consensus 287 kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~ 366 (457)
T KOG0743|consen 287 KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIY 366 (457)
T ss_pred CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEE
Confidence 6788888886442211000 000 0111122333334 23466677665432 111 12234678
Q ss_pred cCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHH-HHhcCC
Q 004895 322 IDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVA-NALKNK 375 (724)
Q Consensus 322 l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~-~~l~~~ 375 (724)
+.--+.+....|+....+...++ .++.+|.+...|--+.=..++ .++.++
T Consensus 367 mgyCtf~~fK~La~nYL~~~~~h----~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 367 MGYCTFEAFKTLASNYLGIEEDH----RLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred cCCCCHHHHHHHHHHhcCCCCCc----chhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 89999999999999998754322 345566665555443333334 444554
No 247
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.54 E-value=0.096 Score=57.99 Aligned_cols=200 Identities=14% Similarity=0.169 Sum_probs=114.0
Q ss_pred cccchHHHHHHHHHHhc----C-CCccEEEEEcCCCCcHHHHHHHHHHHHhh---c---cCCCeEEEEEEecCCChHHHH
Q 004895 161 IFNSRKKIFQDVIEALK----D-DKLNIIGVCGMGGVGKTTLVKQIAKQVME---D---NVFDKVVMAEITKNPDAQKIQ 229 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~----~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~---~~F~~~~wv~vs~~~~~~~l~ 229 (724)
.+-+|+.+..+|-..+. + +..+.+-|.|.+|+|||..+..|.+.... + ..|+ .+.|+.-.-....++.
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~Y 475 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREIY 475 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHHH
Confidence 34579999888887765 3 34458999999999999999999997652 1 2232 2344444456788999
Q ss_pred HHHHHhhCCCCCCCchhHHHHHHHHHHHh----cCCcEEEEEcccccccc-ccc-cccccCCCCcCCCCCCCCCcEEEEE
Q 004895 230 GELASDLGMNFDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKLE-LDK-IGIPYGDVDEKDKNDDPRRCTIILT 303 (724)
Q Consensus 230 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~~-~~~-l~~~~~~~~~~~~~~~~~~s~ilvT 303 (724)
..|..++........ .....+..+.. +.+.+++++|+++..-. -++ +...|.+ ...++||++|-
T Consensus 476 ~~I~~~lsg~~~~~~---~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdW-------pt~~~sKLvvi 545 (767)
T KOG1514|consen 476 EKIWEALSGERVTWD---AALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDW-------PTLKNSKLVVI 545 (767)
T ss_pred HHHHHhcccCcccHH---HHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcC-------CcCCCCceEEE
Confidence 999999876544332 12233333332 34678999999854311 011 1111111 03456665554
Q ss_pred ecccc--hh-h------hhcCCCceEecCCCCHHHHHHHHHHHhCCC--CCCCCchhHHHHHHHHhCCchhHHHHHHHH
Q 004895 304 SRSRD--LL-C------IDMNSQKMFWIDALSEEEALQLFEKIVGES--TKASDFRPLAEEIVGKCGGLPVALSTVANA 371 (724)
Q Consensus 304 tR~~~--v~-~------~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~--~~~~~l~~~~~~I~~~c~GlPLai~~~~~~ 371 (724)
+=... .. . ...-+...+...|.+.++--++...+..+. ..+...+-++++|+.-.|-.-.|+.+.-+.
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred EecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 43221 11 0 001223567788888888888777766432 112222334555555555555555444333
No 248
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.50 E-value=0.0091 Score=53.57 Aligned_cols=45 Identities=31% Similarity=0.560 Sum_probs=36.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCC
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNF 240 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~ 240 (724)
+|.|.|++|+||||+|+.++++..-. .+ +...++++|++..|.+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gmsl 46 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMSL 46 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCCH
Confidence 78999999999999999999987543 11 23478899999888763
No 249
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.49 E-value=0.01 Score=70.21 Aligned_cols=106 Identities=18% Similarity=0.273 Sum_probs=61.1
Q ss_pred ccccchHHHHHHHHHHhc-------CC--CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHH
Q 004895 160 NIFNSRKKIFQDVIEALK-------DD--KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQG 230 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~-------~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 230 (724)
..++|.++.+..+...+. +. ...++.++|+.|+|||+||+.+++..... -...+-++.++..+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~--~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS--EDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC--ccceEEEEchhccccccH--
Confidence 456798988888887764 11 23467789999999999999999876321 123444555543222111
Q ss_pred HHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 231 ELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
...+|.+..-. .......+.+.+......+++||+++..
T Consensus 585 --~~l~g~~~gyv--g~~~~~~l~~~~~~~p~~VvllDeieka 623 (821)
T CHL00095 585 --SKLIGSPPGYV--GYNEGGQLTEAVRKKPYTVVLFDEIEKA 623 (821)
T ss_pred --HHhcCCCCccc--CcCccchHHHHHHhCCCeEEEECChhhC
Confidence 11223221100 0011223445555444579999999765
No 250
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.48 E-value=0.013 Score=60.27 Aligned_cols=86 Identities=22% Similarity=0.224 Sum_probs=54.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC-----CCchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD-----SNDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 254 (724)
.-+++-|+|++|+||||||.+++...... -..++|++..+.++.. .++.++.+.+ .....++....+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 35688999999999999999988776532 3458899887766642 3455554311 1111233333333
Q ss_pred HHHhcCCcEEEEEccccc
Q 004895 255 QRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~~ 272 (724)
..+..+..-++|+|-+-.
T Consensus 127 ~li~s~~~~lIVIDSvaa 144 (325)
T cd00983 127 SLVRSGAVDLIVVDSVAA 144 (325)
T ss_pred HHHhccCCCEEEEcchHh
Confidence 333445667999999843
No 251
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.47 E-value=0.008 Score=71.32 Aligned_cols=105 Identities=19% Similarity=0.315 Sum_probs=61.6
Q ss_pred cccchHHHHHHHHHHhcC-------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALKD-------D--KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~-------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
.++|.+..++.+...+.. + ...++.++|+.|+|||++|+.+....... -...+.++++.......
T Consensus 566 ~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~--~~~~i~~d~s~~~~~~~---- 639 (852)
T TIGR03346 566 RVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD--EDAMVRIDMSEYMEKHS---- 639 (852)
T ss_pred ccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC--CCcEEEEechhhcccch----
Confidence 467999888888887752 1 23578899999999999999999876432 22345555554322111
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
....+|.+..... ......+...+......+|+||++...
T Consensus 640 ~~~l~g~~~g~~g--~~~~g~l~~~v~~~p~~vlllDeieka 679 (852)
T TIGR03346 640 VARLIGAPPGYVG--YEEGGQLTEAVRRKPYSVVLFDEVEKA 679 (852)
T ss_pred HHHhcCCCCCccC--cccccHHHHHHHcCCCcEEEEeccccC
Confidence 1122232211100 011123444444444569999999765
No 252
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.46 E-value=0.015 Score=59.44 Aligned_cols=88 Identities=23% Similarity=0.284 Sum_probs=49.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK 258 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 258 (724)
..+++.|+|++|+||||++..++.....+..-..+..++..... ...+-+....+.++.+........ ........+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~-~l~~~l~~~~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPK-ELRKALDRLR 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHH-HHHHHHHHcc
Confidence 35699999999999999999999887643111245566543221 223334444555555443222122 2233333332
Q ss_pred cCCcEEEEEccc
Q 004895 259 KEKRVLIILDNI 270 (724)
Q Consensus 259 ~~kr~LlVlDdv 270 (724)
..=+|++|..
T Consensus 272 --~~d~vliDt~ 281 (282)
T TIGR03499 272 --DKDLILIDTA 281 (282)
T ss_pred --CCCEEEEeCC
Confidence 2347777753
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.46 E-value=0.02 Score=53.02 Aligned_cols=40 Identities=38% Similarity=0.428 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
++.|+|++|+||||++..+...... .-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 3689999999999999999988754 234577887765543
No 254
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.46 E-value=0.015 Score=59.95 Aligned_cols=91 Identities=20% Similarity=0.310 Sum_probs=56.6
Q ss_pred chHHHHHHHHHHhcC----CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCC
Q 004895 164 SRKKIFQDVIEALKD----DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMN 239 (724)
Q Consensus 164 gR~~~~~~l~~~L~~----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~ 239 (724)
+|........+++.+ ....-+.|+|..|+|||.||..+++....+ .+ .+.+++++ +++.++....+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~-g~-~v~~~~~~------~l~~~lk~~~~~- 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKK-GV-SSTLLHFP------EFIRELKNSISD- 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-CC-CEEEEEHH------HHHHHHHHHHhc-
Confidence 455555555555542 234678999999999999999999998743 33 35666653 455555554421
Q ss_pred CCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 240 FDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
.. .....+.+. +-=||||||+...
T Consensus 206 ---~~-----~~~~l~~l~--~~dlLiIDDiG~e 229 (306)
T PRK08939 206 ---GS-----VKEKIDAVK--EAPVLMLDDIGAE 229 (306)
T ss_pred ---Cc-----HHHHHHHhc--CCCEEEEecCCCc
Confidence 11 123333443 4569999999543
No 255
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.00027 Score=68.55 Aligned_cols=98 Identities=21% Similarity=0.202 Sum_probs=70.8
Q ss_pred cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC---cccccCCCCCc
Q 004895 547 ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED---IAIVGQLKKLE 623 (724)
Q Consensus 547 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~---~~~~~~l~~L~ 623 (724)
++.+.+.|+++++..... ++...|+.|.||.|+-|+|+.+- .+..+++|+.|.|+.|.|.. +..+.+|++|+
T Consensus 17 dl~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCCccHH----HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 355677777754443222 24567899999999999998773 47788899999999998877 46788899999
Q ss_pred EEEccCCcCc-ccc-----hhhhcCCCCCeEc
Q 004895 624 ILSLRGAEIK-QLP-----LQIGQLTRLQLLD 649 (724)
Q Consensus 624 ~L~l~~~~i~-~lp-----~~i~~l~~L~~L~ 649 (724)
+|.|..|.-. +-+ .-+.-|++|+.|+
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999887322 222 2356688888886
No 256
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.44 E-value=0.015 Score=57.49 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=35.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKI 228 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l 228 (724)
.-.++.|+|++|+|||++|.+++...... -..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~--~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKN--GKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEECC-CCCHHHH
Confidence 35699999999999999999999877543 3568899887 5554443
No 257
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.43 E-value=0.022 Score=57.32 Aligned_cols=90 Identities=27% Similarity=0.345 Sum_probs=56.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEEecCCChHHHHHHHHHhhCCCCC------------CCc
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDN----VFDKVVMAEITKNPDAQKIQGELASDLGMNFD------------SND 244 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~------------~~~ 244 (724)
-.+.=|+|++|+|||.|+.+++-...... .=..++|++-...++.+++. +|++..+.... ...
T Consensus 38 g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~ 116 (256)
T PF08423_consen 38 GSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLE 116 (256)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHH
T ss_pred CcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHH
Confidence 45899999999999999998876543211 12359999999999887774 56766543210 000
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcccc
Q 004895 245 LIYHRAKQLCQRLKKEKRVLIILDNIW 271 (724)
Q Consensus 245 ~~~~~~~~l~~~l~~~kr~LlVlDdv~ 271 (724)
........+...+.+.+--|||+|.+-
T Consensus 117 ~l~~~L~~l~~~l~~~~ikLIVIDSIa 143 (256)
T PF08423_consen 117 ELLELLEQLPKLLSESKIKLIVIDSIA 143 (256)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHhhccccceEEEEecchH
Confidence 011223333344444566799999873
No 258
>PRK09354 recA recombinase A; Provisional
Probab=96.43 E-value=0.015 Score=60.47 Aligned_cols=86 Identities=19% Similarity=0.214 Sum_probs=56.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC-----CCchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD-----SNDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 254 (724)
.-+++-|+|++|+||||||.+++...... -..++||+....++. ..+++++.+.+ .....++....+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~-----~~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP-----VYAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH-----HHHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 35689999999999999999998776533 355889988877665 34555654321 1111333333333
Q ss_pred HHHhcCCcEEEEEccccc
Q 004895 255 QRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~~ 272 (724)
..+..+..-+||+|-+-.
T Consensus 132 ~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 132 TLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred HHhhcCCCCEEEEeChhh
Confidence 444445677999999853
No 259
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=96.40 E-value=0.043 Score=49.52 Aligned_cols=106 Identities=11% Similarity=0.148 Sum_probs=68.7
Q ss_pred HHHHHhhHhHhhHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHH
Q 004895 10 SSIVSEGTKTLSEPIIGRMSYVLKCQSYIDGLKERVEELGQRRKRVKILVDQATEQGYEIFADVTEWLGKVEQFTQGYAK 89 (724)
Q Consensus 10 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~~~~~~~v~~Wl~~l~~~~~~~~e 89 (724)
+++++.+++.+...+...... ....+.-+++|...+..|...+++.+..+...+.+-+.-++++.+...+ ++
T Consensus 8 gaalG~~~~eLlk~v~~~~~k-------~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~-g~ 79 (147)
T PF05659_consen 8 GAALGAVFGELLKAVIDASKK-------SLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEK-GK 79 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHH-HH
Confidence 344555555555554433332 2234556666777777777777777766555566667888899999999 99
Q ss_pred HHhhhhccccccccCCCCCchhHHHHHhHHHHHHHHHHHHH
Q 004895 90 HIINDEDEVRKPCFKGLSPNLMSRYKLSKRAVEDAKYAEHL 130 (724)
Q Consensus 90 d~ld~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~~l~~i 130 (724)
++++.+...+ .+++...++.+++|+++.+.+...
T Consensus 80 ~LV~k~sk~~-------r~n~~kk~~y~~Ki~~le~~l~~f 113 (147)
T PF05659_consen 80 ELVEKCSKVR-------RWNLYKKPRYARKIEELEESLRRF 113 (147)
T ss_pred HHHHHhcccc-------HHHHHhhHhHHHHHHHHHHHHHHH
Confidence 9988765433 234556667788888777766554
No 260
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.014 Score=55.89 Aligned_cols=128 Identities=19% Similarity=0.227 Sum_probs=70.8
Q ss_pred cccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHH
Q 004895 161 IFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQK 227 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 227 (724)
.+-|-+-.++++.+... -+..+-+.++|++|.|||.||+.|+++.... |+.|-+. +
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~-------firvvgs----e 224 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAA-------FIRVVGS----E 224 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchh-------eeeeccH----H
Confidence 34455555555555432 2356778899999999999999999976532 3433321 2
Q ss_pred HHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--ccc-------c-ccccCCCCcCCCCCCCCC
Q 004895 228 IQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--LDK-------I-GIPYGDVDEKDKNDDPRR 297 (724)
Q Consensus 228 l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~-------l-~~~~~~~~~~~~~~~~~~ 297 (724)
..+ +.+|... .....+++.-+.+.+-.|++|.++.... ++. + ...+..+.+.+.+.....
T Consensus 225 fvq---kylgegp-------rmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~n 294 (408)
T KOG0727|consen 225 FVQ---KYLGEGP-------RMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTN 294 (408)
T ss_pred HHH---HHhccCc-------HHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccc
Confidence 211 1233211 1233444444556788999999865411 000 0 011111223344456677
Q ss_pred cEEEEEecccch
Q 004895 298 CTIILTSRSRDL 309 (724)
Q Consensus 298 s~ilvTtR~~~v 309 (724)
.|||+.|...+.
T Consensus 295 vkvimatnradt 306 (408)
T KOG0727|consen 295 VKVIMATNRADT 306 (408)
T ss_pred eEEEEecCcccc
Confidence 888888876553
No 261
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.38 E-value=0.031 Score=56.00 Aligned_cols=93 Identities=19% Similarity=0.300 Sum_probs=57.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHHHHhhCC--------CCCCCchhH---
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGELASDLGM--------NFDSNDLIY--- 247 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~~--------~~~~~~~~~--- 247 (724)
+-+.++|+|..|+|||||++.+++..+.+ +-+.++++-+.+.. ...++.+++...-.. ..++.....
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i~~~-~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNIAKA-HGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44578999999999999999999988753 23456677776654 345555555443111 111211111
Q ss_pred -HHHHHHHHHHh--cCCcEEEEEcccccc
Q 004895 248 -HRAKQLCQRLK--KEKRVLIILDNIWTK 273 (724)
Q Consensus 248 -~~~~~l~~~l~--~~kr~LlVlDdv~~~ 273 (724)
..+-.+.+++. +++++|+++||+-..
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 11233445553 278999999998543
No 262
>PRK06526 transposase; Provisional
Probab=96.37 E-value=0.0088 Score=59.88 Aligned_cols=74 Identities=20% Similarity=0.214 Sum_probs=44.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKE 260 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 260 (724)
..-+.|+|++|+|||+||..+.+..... .+ .+.|+ +..+++..+..... ... .......+.
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~-g~-~v~f~------t~~~l~~~l~~~~~----~~~-----~~~~l~~l~-- 158 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQA-GH-RVLFA------TAAQWVARLAAAHH----AGR-----LQAELVKLG-- 158 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHC-CC-chhhh------hHHHHHHHHHHHHh----cCc-----HHHHHHHhc--
Confidence 4468999999999999999999887543 22 23443 33445555543211 111 111222332
Q ss_pred CcEEEEEcccccc
Q 004895 261 KRVLIILDNIWTK 273 (724)
Q Consensus 261 kr~LlVlDdv~~~ 273 (724)
+.-+||+||+...
T Consensus 159 ~~dlLIIDD~g~~ 171 (254)
T PRK06526 159 RYPLLIVDEVGYI 171 (254)
T ss_pred cCCEEEEcccccC
Confidence 3469999999643
No 263
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.029 Score=61.81 Aligned_cols=160 Identities=18% Similarity=0.127 Sum_probs=85.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC--ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP--DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK 258 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 258 (724)
..-|.|.|+.|+|||+||+.+++... +.+.-.+.+++++.-. ..+.+++.+-. ...+.+.
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~-----------------vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLDGSSLEKIQKFLNN-----------------VFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhccchhHHHHHHHHHH-----------------HHHHHHh
Confidence 45788999999999999999999987 4444456677776432 23333322211 1222233
Q ss_pred cCCcEEEEEccccccc--------cccccc---c-ccCCCCcCCCCCCCCCcEEEEEecccchhh----hhcCCCceEec
Q 004895 259 KEKRVLIILDNIWTKL--------ELDKIG---I-PYGDVDEKDKNDDPRRCTIILTSRSRDLLC----IDMNSQKMFWI 322 (724)
Q Consensus 259 ~~kr~LlVlDdv~~~~--------~~~~l~---~-~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~----~~~~~~~~~~l 322 (724)
-.+-+|||||++... +|.... . .+..+ ..++...++.-++|.|.....-.. ..........|
T Consensus 493 -~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqv-i~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L 570 (952)
T KOG0735|consen 493 -YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQV-IKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIAL 570 (952)
T ss_pred -hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHH-HHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEec
Confidence 367899999995431 221100 0 00000 000000122224555555443211 11122346788
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCc
Q 004895 323 DALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGL 361 (724)
Q Consensus 323 ~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl 361 (724)
..+...+-.++++.......... ......-+..+|+|+
T Consensus 571 ~ap~~~~R~~IL~~~~s~~~~~~-~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 571 PAPAVTRRKEILTTIFSKNLSDI-TMDDLDFLSVKTEGY 608 (952)
T ss_pred CCcchhHHHHHHHHHHHhhhhhh-hhHHHHHHHHhcCCc
Confidence 89998888888877654322111 123334488888875
No 264
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.35 E-value=0.015 Score=60.01 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=25.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.....++|+|++|+|||.+|+.+++....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~ 174 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGI 174 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCC
Confidence 34678999999999999999999998864
No 265
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.33 E-value=0.029 Score=58.39 Aligned_cols=59 Identities=25% Similarity=0.286 Sum_probs=36.5
Q ss_pred CcEEEEEecccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhH
Q 004895 297 RCTIILTSRSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVA 364 (724)
Q Consensus 297 ~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 364 (724)
++.+|++|.+.. +..........+.+.+++.+++.+.+.+. +. .. . . ..+..++|.|+.
T Consensus 143 ~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~-~~---~~--~--~-~~l~~~~g~p~~ 202 (325)
T PRK08699 143 QVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER-GV---AE--P--E-ERLAFHSGAPLF 202 (325)
T ss_pred CCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc-CC---Cc--H--H-HHHHHhCCChhh
Confidence 455666666654 43333445578999999999998888654 11 11 1 1 123568898964
No 266
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.31 E-value=0.022 Score=59.39 Aligned_cols=91 Identities=21% Similarity=0.198 Sum_probs=57.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh---ccC-CCeEEEEEEecCCChHHHHHHHHHhhCCCCCC---------Cchh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME---DNV-FDKVVMAEITKNPDAQKIQGELASDLGMNFDS---------NDLI 246 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~~-F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~---------~~~~ 246 (724)
.-+++-|+|++|+|||+|+.+++-.... ... -..++||+..+.|+.+++. ++++.++.+.+. ....
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~-~ia~~~g~d~~~~l~~I~~~~~~~~ 203 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIV-PIAERFGMDADAVLDNIIYARAYTY 203 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHH-HHHHHcCCChhhhcCeEEEecCCCH
Confidence 3468889999999999999998654321 111 2468999999999988874 466776654211 0001
Q ss_pred HH---HHHHHHHHHhcCCcEEEEEcccc
Q 004895 247 YH---RAKQLCQRLKKEKRVLIILDNIW 271 (724)
Q Consensus 247 ~~---~~~~l~~~l~~~kr~LlVlDdv~ 271 (724)
++ ....+...+...+--|||+|.+-
T Consensus 204 e~~~~~l~~l~~~i~~~~~~LvVIDSit 231 (344)
T PLN03187 204 EHQYNLLLGLAAKMAEEPFRLLIVDSVI 231 (344)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 11 22223233333455688999874
No 267
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.30 E-value=0.025 Score=59.12 Aligned_cols=58 Identities=26% Similarity=0.328 Sum_probs=42.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccC----CCeEEEEEEecCCChHHHHHHHHHhhCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV----FDKVVMAEITKNPDAQKIQGELASDLGM 238 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 238 (724)
...++-|+|++|+|||+|+.+++........ =..++||+..+.++..++. ++++.++.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g~ 162 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALGL 162 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcCC
Confidence 3568899999999999999999876532111 1368999998888877764 45555553
No 268
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.016 Score=61.46 Aligned_cols=85 Identities=21% Similarity=0.259 Sum_probs=46.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec-CCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK-NPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
..++.++|++|+||||++..++........+ .+..++... .....+.++..++.++.+..... ....+.+.+..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~-~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~----~~~~l~~~l~~ 297 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGK-SVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK----DIKKFKETLAR 297 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEecccchhhhHHHHHHHHHHhcCCCeeehH----HHHHHHHHHHh
Confidence 4689999999999999999999865332222 233333221 11223344455555555432211 12334444433
Q ss_pred CCcEEEEEccc
Q 004895 260 EKRVLIILDNI 270 (724)
Q Consensus 260 ~kr~LlVlDdv 270 (724)
...-++|+|-.
T Consensus 298 ~~~D~VLIDTa 308 (432)
T PRK12724 298 DGSELILIDTA 308 (432)
T ss_pred CCCCEEEEeCC
Confidence 23346888843
No 269
>PTZ00494 tuzin-like protein; Provisional
Probab=96.28 E-value=0.14 Score=53.84 Aligned_cols=164 Identities=12% Similarity=0.147 Sum_probs=100.0
Q ss_pred CCcccccccchHHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 155 DMKDYNIFNSRKKIFQDVIEALK---DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 155 ~~~~~~~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
.+.....++.|+.+-..+.+.|. ...++++.+.|.-|.||++|.+........ ..++|++... ++-++.
T Consensus 366 a~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~---EDtLrs 437 (664)
T PTZ00494 366 AAAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGT---EDTLRS 437 (664)
T ss_pred cccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCC---cchHHH
Confidence 35556678899988887777775 356889999999999999999999887654 2678888765 456788
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHH------hcCCcEEEEEcccccccc----ccccccccCCCCcCCCCCCCCCcEEE
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRL------KKEKRVLIILDNIWTKLE----LDKIGIPYGDVDEKDKNDDPRRCTII 301 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l------~~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~~~~~~~~~s~il 301 (724)
+.+.++.+.-+. -.+..+.+.+.. .+++.=+||+-== +-.. +++. ..+.. ...-|.|+
T Consensus 438 VVKALgV~nve~--CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLR-EGssL~RVYnE~-vaLac--------DrRlCHvv 505 (664)
T PTZ00494 438 VVRALGVSNVEV--CGDLLGFVEEAMRGATVKASDGVPFLVMRLR-EGSDLGRVYGEV-VSLVS--------DCQACHIV 505 (664)
T ss_pred HHHHhCCCChhh--hccHHHHHHHHHHHHHHhcCCCCCEEEEEec-cCCcHHHHHHHH-HHHHc--------cchhheee
Confidence 999998764321 111222222211 1244445554321 1111 1111 11222 34556677
Q ss_pred EEecccchh--hhhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 302 LTSRSRDLL--CIDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 302 vTtR~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
+---.+.+- ......-.-|.+++|+.++|.++.++..
T Consensus 506 ~EVplESLT~~n~~LPRLDFy~VPnFSr~QAf~YtqH~l 544 (664)
T PTZ00494 506 LAVPMKALTPLNVSSRRLDFYCIPPFSRRQAFAYAEHTL 544 (664)
T ss_pred eechHhhhchhhccCccceeEecCCcCHHHHHHHHhccc
Confidence 654443321 1122334578899999999999888764
No 270
>PRK04296 thymidine kinase; Provisional
Probab=96.26 E-value=0.0071 Score=57.92 Aligned_cols=112 Identities=17% Similarity=0.111 Sum_probs=61.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC--CchhHHHHHHHHHHHhc
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS--NDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~--~~~~~~~~~~l~~~l~~ 259 (724)
.++.|+|+.|.||||+|..++.+.... -..++.+. ..++.......+++.++..... .....+....+.+ ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 467899999999999999999987643 22334342 1112222233456666644322 1112222333333 23
Q ss_pred CCcEEEEEcccccc--ccccccccccCCCCcCCCCCCCCCcEEEEEecccch
Q 004895 260 EKRVLIILDNIWTK--LELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL 309 (724)
Q Consensus 260 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 309 (724)
++.-+||+|.+.-. ++..++...+ ...|..|++|.+..+.
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l----------~~~g~~vi~tgl~~~~ 118 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVL----------DDLGIPVICYGLDTDF 118 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHH----------HHcCCeEEEEecCccc
Confidence 34458999999432 1122221111 3457789999988653
No 271
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.056 Score=57.63 Aligned_cols=165 Identities=21% Similarity=0.252 Sum_probs=87.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHH--
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRL-- 257 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l-- 257 (724)
....+.+.|++|+|||+||..++..- .|..+--++..+-.... +......+.+..
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~S----~FPFvKiiSpe~miG~s-------------------EsaKc~~i~k~F~D 593 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALSS----DFPFVKIISPEDMIGLS-------------------ESAKCAHIKKIFED 593 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhhc----CCCeEEEeChHHccCcc-------------------HHHHHHHHHHHHHH
Confidence 45567789999999999999998643 36544333221111111 111222222222
Q ss_pred -hcCCcEEEEEccccccccccccccccCCCCc-----CCCCCCCCCcE--EEEEecccchhhhhcC----CCceEecCCC
Q 004895 258 -KKEKRVLIILDNIWTKLELDKIGIPYGDVDE-----KDKNDDPRRCT--IILTSRSRDLLCIDMN----SQKMFWIDAL 325 (724)
Q Consensus 258 -~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~-----~~~~~~~~~s~--ilvTtR~~~v~~~~~~----~~~~~~l~~L 325 (724)
.+..=-.||+||++...+|-.++.-+..... ..+.....|-| |+-||....+.. .|+ ....|.++.+
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~-~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ-EMGILDCFSSTIHVPNL 672 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH-HcCHHHhhhheeecCcc
Confidence 1234579999999988888766543221100 01111233333 555666665542 122 2357889999
Q ss_pred CH-HHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHh
Q 004895 326 SE-EEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANAL 372 (724)
Q Consensus 326 ~~-~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 372 (724)
+. ++..+.++..- ...+.+.+.++.+...+|- -..|+-+-.++
T Consensus 673 ~~~~~~~~vl~~~n--~fsd~~~~~~~~~~~~~~~--~vgIKklL~li 716 (744)
T KOG0741|consen 673 TTGEQLLEVLEELN--IFSDDEVRAIAEQLLSKKV--NVGIKKLLMLI 716 (744)
T ss_pred CchHHHHHHHHHcc--CCCcchhHHHHHHHhcccc--chhHHHHHHHH
Confidence 87 77777776642 1122334556666666662 23344444433
No 272
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.22 E-value=0.036 Score=54.92 Aligned_cols=30 Identities=30% Similarity=0.589 Sum_probs=26.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
++..+++|.|+.|+|||||++.+....+..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 567799999999999999999999888653
No 273
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.21 E-value=0.042 Score=57.58 Aligned_cols=88 Identities=18% Similarity=0.179 Sum_probs=47.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC--hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD--AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRL 257 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 257 (724)
+.++|+++|++|+||||++..++.....+ .+ .+..++.. .+. ..+-++...+.++.+........... .....+
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~-Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~-~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGK-KK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMT-RALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHc-CC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHH-HHHHHH
Confidence 45799999999999999999999877543 22 34455543 222 22233444455554432111122222 223333
Q ss_pred hcC-CcEEEEEcccc
Q 004895 258 KKE-KRVLIILDNIW 271 (724)
Q Consensus 258 ~~~-kr~LlVlDdv~ 271 (724)
... +.=++++|-.-
T Consensus 316 k~~~~~DvVLIDTaG 330 (436)
T PRK11889 316 KEEARVDYILIDTAG 330 (436)
T ss_pred HhccCCCEEEEeCcc
Confidence 321 22467777764
No 274
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.19 E-value=0.06 Score=61.77 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=79.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK 261 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 261 (724)
+-|.++|++|+|||++|+.++...... | +.++.++ +.. +. .+. .......+........
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~--f---~~is~~~------~~~-~~--~g~-------~~~~~~~~f~~a~~~~ 244 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVP--F---FTISGSD------FVE-MF--VGV-------GASRVRDMFEQAKKAA 244 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCC--E---EEEehHH------hHH-hh--hcc-------cHHHHHHHHHHHHhcC
Confidence 348899999999999999998876432 2 2232221 111 10 010 1112233333334457
Q ss_pred cEEEEEcccccccccc------------cc-ccccCCCCcCCCCCCCCCcEEEEEecccchhhhh----cCCCceEecCC
Q 004895 262 RVLIILDNIWTKLELD------------KI-GIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCID----MNSQKMFWIDA 324 (724)
Q Consensus 262 r~LlVlDdv~~~~~~~------------~l-~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~----~~~~~~~~l~~ 324 (724)
+++|++|+++....-. .. ...+. ..+......+.-||.||......... ......+.++.
T Consensus 245 P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~---~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~ 321 (644)
T PRK10733 245 PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLV---EMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 321 (644)
T ss_pred CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHH---hhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCC
Confidence 8999999996541100 00 00000 01111133455566677765532111 12245777888
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCC
Q 004895 325 LSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGG 360 (724)
Q Consensus 325 L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G 360 (724)
-+.++-.+++..+.......++. ....+++.+.|
T Consensus 322 Pd~~~R~~Il~~~~~~~~l~~~~--d~~~la~~t~G 355 (644)
T PRK10733 322 PDVRGREQILKVHMRRVPLAPDI--DAAIIARGTPG 355 (644)
T ss_pred CCHHHHHHHHHHHhhcCCCCCcC--CHHHHHhhCCC
Confidence 88888888888876533222221 13356666666
No 275
>PTZ00301 uridine kinase; Provisional
Probab=96.16 E-value=0.015 Score=56.42 Aligned_cols=26 Identities=35% Similarity=0.723 Sum_probs=23.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+.+|+|.|.+|+||||||+.+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHH
Confidence 56899999999999999999988764
No 276
>PRK06921 hypothetical protein; Provisional
Probab=96.15 E-value=0.028 Score=56.81 Aligned_cols=39 Identities=28% Similarity=0.369 Sum_probs=30.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI 219 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 219 (724)
....+.++|..|+|||+||..+++....+.. ..++|++.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g-~~v~y~~~ 154 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKG-VPVLYFPF 154 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcC-ceEEEEEH
Confidence 4567899999999999999999998764312 34667764
No 277
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.15 E-value=0.033 Score=58.01 Aligned_cols=58 Identities=26% Similarity=0.312 Sum_probs=42.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEEecCCChHHHHHHHHHhhCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDN----VFDKVVMAEITKNPDAQKIQGELASDLGM 238 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 238 (724)
.-.++-|+|++|+|||+|+.+++....... .=..++||+..+.++.+++. ++++.++.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~gl 155 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARGL 155 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcCC
Confidence 356889999999999999999987753211 01368999998888877654 45555543
No 278
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.15 E-value=0.15 Score=56.43 Aligned_cols=154 Identities=18% Similarity=0.222 Sum_probs=86.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK 261 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 261 (724)
.-|.++|++|.|||.||.+++.....+ +|+|.+. +++.. .+|. .++....++++-+.-+
T Consensus 702 ~giLLyGppGcGKT~la~a~a~~~~~~-------fisvKGP----ElL~K---yIGa-------SEq~vR~lF~rA~~a~ 760 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLASAIASNSNLR-------FISVKGP----ELLSK---YIGA-------SEQNVRDLFERAQSAK 760 (952)
T ss_pred cceEEECCCCCcHHHHHHHHHhhCCee-------EEEecCH----HHHHH---Hhcc-------cHHHHHHHHHHhhccC
Confidence 458899999999999999998766432 5676653 33222 2232 3455667777777789
Q ss_pred cEEEEEcccccccc-------------ccccccccCCCCcCCCCCCCCCcEEEEEecccchh-hhhcCCC---ceEecCC
Q 004895 262 RVLIILDNIWTKLE-------------LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL-CIDMNSQ---KMFWIDA 324 (724)
Q Consensus 262 r~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-~~~~~~~---~~~~l~~ 324 (724)
+|.|++|.+++... .+.+...+ ++.-+-.|..|+..|...+.. +....+. ..+.-+.
T Consensus 761 PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTel------DG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~ 834 (952)
T KOG0735|consen 761 PCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTEL------DGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPL 834 (952)
T ss_pred CeEEEeccccccCcccCCCCCCchHHHHHHHHHhh------ccccccceEEEEEecCCccccCHhhcCCCccceeeeCCC
Confidence 99999999976521 11111111 111134566666555544432 1111111 2223333
Q ss_pred CCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhH
Q 004895 325 LSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVA 364 (724)
Q Consensus 325 L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 364 (724)
-++.|-.++|+........+. ....+.++.+.+|..-|
T Consensus 835 P~~~eRl~il~~ls~s~~~~~--~vdl~~~a~~T~g~tgA 872 (952)
T KOG0735|consen 835 PDEPERLEILQVLSNSLLKDT--DVDLECLAQKTDGFTGA 872 (952)
T ss_pred CCcHHHHHHHHHHhhccCCcc--ccchHHHhhhcCCCchh
Confidence 456666777777654211111 12355677777776644
No 279
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.15 E-value=0.19 Score=51.55 Aligned_cols=166 Identities=10% Similarity=0.087 Sum_probs=91.5
Q ss_pred HHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHH--------hhccCCCeEEEEEE-ecCCChHHHHHHHHHhhCCC
Q 004895 170 QDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQV--------MEDNVFDKVVMAEI-TKNPDAQKIQGELASDLGMN 239 (724)
Q Consensus 170 ~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~--------~~~~~F~~~~wv~v-s~~~~~~~l~~~i~~~l~~~ 239 (724)
+.+...+..++. .+..++|..|.||+++|..+.+.. ....|.+.+.++.. .+....+++. ++.+.+...
T Consensus 6 ~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~ 84 (299)
T PRK07132 6 KFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFS 84 (299)
T ss_pred HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccC
Confidence 344445544444 566799999999999999999886 22223333444432 1223333332 333333211
Q ss_pred CCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecc-cchhhhhcCC
Q 004895 240 FDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRS-RDLLCIDMNS 316 (724)
Q Consensus 240 ~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-~~v~~~~~~~ 316 (724)
.- ..+.+-++|+|++.... ..+.+...+.. ....+.+|++|.+ ..+...-.+.
T Consensus 85 ~~----------------~~~~~KvvII~~~e~m~~~a~NaLLK~LEE--------Pp~~t~~il~~~~~~kll~TI~SR 140 (299)
T PRK07132 85 SF----------------VQSQKKILIIKNIEKTSNSLLNALLKTIEE--------PPKDTYFLLTTKNINKVLPTIVSR 140 (299)
T ss_pred Cc----------------ccCCceEEEEecccccCHHHHHHHHHHhhC--------CCCCeEEEEEeCChHhChHHHHhC
Confidence 10 11466788999986543 23333223322 3345556655543 3333322455
Q ss_pred CceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHH
Q 004895 317 QKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALST 367 (724)
Q Consensus 317 ~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 367 (724)
...+++.++++++..+.+... + .+ ++.++.++...+|.--|+..
T Consensus 141 c~~~~f~~l~~~~l~~~l~~~-~---~~---~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 141 CQVFNVKEPDQQKILAKLLSK-N---KE---KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred eEEEECCCCCHHHHHHHHHHc-C---CC---hhHHHHHHHHcCCHHHHHHH
Confidence 678999999999998877664 1 11 24466677777763344444
No 280
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.15 E-value=0.046 Score=54.46 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=35.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 232 (724)
.-+++.|.|++|+|||+||.++......+ -..++|++..+ +..++.+.+
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeC--CHHHHHHHH
Confidence 45699999999999999999987664322 34588888765 444555543
No 281
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.14 E-value=0.024 Score=59.17 Aligned_cols=59 Identities=19% Similarity=0.198 Sum_probs=43.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc---c-CCCeEEEEEEecCCChHHHHHHHHHhhCCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMED---N-VFDKVVMAEITKNPDAQKIQGELASDLGMN 239 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~ 239 (724)
...++-|+|.+|+|||+|+..++-..... . .-..++|++..+.++.+++ .+|++.++..
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 35688899999999999999887543211 1 1136999999999988776 5667776644
No 282
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.14 E-value=0.01 Score=53.61 Aligned_cols=75 Identities=23% Similarity=0.396 Sum_probs=45.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCC-CCCCCchhHHHHHHHHHHHhcCCc
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGM-NFDSNDLIYHRAKQLCQRLKKEKR 262 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~-~~~~~~~~~~~~~~l~~~l~~~kr 262 (724)
|.++|++|+|||+||+.+++.... ...-+.++...+..++....--.-+. ...... +.+.+ .+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~-----~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~--------l~~a~--~~~ 66 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGR-----PVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGP--------LVRAM--RKG 66 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTC-----EEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-C--------CCTTH--HEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhc-----ceEEEEeccccccccceeeeeeccccccccccc--------ccccc--cce
Confidence 578999999999999999998832 24557788888877765433221000 000000 11111 157
Q ss_pred EEEEEcccccc
Q 004895 263 VLIILDNIWTK 273 (724)
Q Consensus 263 ~LlVlDdv~~~ 273 (724)
.++|||++...
T Consensus 67 ~il~lDEin~a 77 (139)
T PF07728_consen 67 GILVLDEINRA 77 (139)
T ss_dssp EEEEESSCGG-
T ss_pred eEEEECCcccC
Confidence 99999999743
No 283
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.13 E-value=0.042 Score=59.91 Aligned_cols=89 Identities=19% Similarity=0.315 Sum_probs=49.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK 258 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 258 (724)
...+|+|+|++|+||||++..++.....+.....+..++.... ....+.+....+.++....... .........+.+.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~-d~~~L~~aL~~l~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEAD-SAESLLDLLERLR 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecC-cHHHHHHHHHHhc
Confidence 3579999999999999999999887654322334555554321 1222333334444444332221 1122233333333
Q ss_pred cCCcEEEEEcccc
Q 004895 259 KEKRVLIILDNIW 271 (724)
Q Consensus 259 ~~kr~LlVlDdv~ 271 (724)
+.-+||+|..-
T Consensus 428 --~~DLVLIDTaG 438 (559)
T PRK12727 428 --DYKLVLIDTAG 438 (559)
T ss_pred --cCCEEEecCCC
Confidence 34588888874
No 284
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=96.12 E-value=0.037 Score=54.76 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=35.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLG 237 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 237 (724)
...++.|.|++|+||||||.+++.....+. ..++|++... +..++.+.+ .+++
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~--~~~~~~~~~-~~~g 75 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQL--TTTEFIKQM-MSLG 75 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCC--CHHHHHHHH-HHhC
Confidence 345999999999999999877766653222 3466776333 445666665 3344
No 285
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.12 E-value=0.0081 Score=53.87 Aligned_cols=30 Identities=43% Similarity=0.571 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFD 212 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~ 212 (724)
.-|.|.||+|+||||+++.+.+..+.+. |.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g-~k 35 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKG-YK 35 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcC-ce
Confidence 4689999999999999999999988643 54
No 286
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.12 E-value=0.022 Score=52.68 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=28.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEE
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMA 217 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 217 (724)
.-..+.|+|+.|.|||||.+.+|...+.. .+.+|+
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~pt---~G~i~~ 61 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERPT---RGKILV 61 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcCC---CceEEE
Confidence 44588999999999999999999988653 345555
No 287
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.12 E-value=0.028 Score=52.96 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
++.++|++|+||||++..++......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 68899999999999999999887653
No 288
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.015 Score=65.96 Aligned_cols=105 Identities=20% Similarity=0.335 Sum_probs=64.6
Q ss_pred ccccchHHHHHHHHHHhc---------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHH
Q 004895 160 NIFNSRKKIFQDVIEALK---------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQG 230 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~---------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 230 (724)
..++|.++.+..+.+.+. +....+...+||.|||||-||+.++...-... +..+-++.|+.... .
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~Ek----H 564 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEK----H 564 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHH----H
Confidence 346799999999888875 22456788899999999999999998773211 33455555543211 2
Q ss_pred HHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcE-EEEEcccccc
Q 004895 231 ELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRV-LIILDNIWTK 273 (724)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~-LlVlDdv~~~ 273 (724)
.+.+-+|.++.--. .+....|-+..++ ++| +|+||+++..
T Consensus 565 sVSrLIGaPPGYVG--yeeGG~LTEaVRr-~PySViLlDEIEKA 605 (786)
T COG0542 565 SVSRLIGAPPGYVG--YEEGGQLTEAVRR-KPYSVILLDEIEKA 605 (786)
T ss_pred HHHHHhCCCCCCce--eccccchhHhhhc-CCCeEEEechhhhc
Confidence 23333444432111 1112345555554 555 9999999765
No 289
>PRK09183 transposase/IS protein; Provisional
Probab=96.08 E-value=0.027 Score=56.74 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
...+.|+|++|+|||+||..+++....
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~ 128 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVR 128 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 346789999999999999999887654
No 290
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.03 E-value=0.038 Score=59.65 Aligned_cols=88 Identities=26% Similarity=0.322 Sum_probs=51.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCCCCCCC---chhHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGMNFDSN---DLIYHRAKQLCQ 255 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~~~~~---~~~~~~~~~l~~ 255 (724)
...+|.++|++|+||||+|..++...... .+ .+..+++... +...+.++.+++.++.+.... ...........+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~-g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~ 171 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK-GL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLE 171 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc-CC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHH
Confidence 46799999999999999999999888753 22 3444544321 223445666777776543221 111222233333
Q ss_pred HHhcCCcEEEEEcccc
Q 004895 256 RLKKEKRVLIILDNIW 271 (724)
Q Consensus 256 ~l~~~kr~LlVlDdv~ 271 (724)
.+. +. -++|+|..-
T Consensus 172 ~~~-~~-DvVIIDTAG 185 (437)
T PRK00771 172 KFK-KA-DVIIVDTAG 185 (437)
T ss_pred Hhh-cC-CEEEEECCC
Confidence 333 22 568888773
No 291
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.01 E-value=0.0098 Score=64.96 Aligned_cols=47 Identities=17% Similarity=0.361 Sum_probs=41.1
Q ss_pred cccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 161 IFNSRKKIFQDVIEALK------DDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.++|.++.+++|++.|. +.+-+++.++||+|+||||||+.+++-...
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 46799999999999883 456689999999999999999999998754
No 292
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.01 E-value=0.029 Score=58.21 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=41.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh---cc-CCCeEEEEEEecCCChHHHHHHHHHhhCCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME---DN-VFDKVVMAEITKNPDAQKIQGELASDLGMN 239 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~ 239 (724)
...++.|+|.+|+|||||+..++..... .. .-..++|++..+.++..++ ..+++.++..
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~~ 157 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGLN 157 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCCC
Confidence 3578999999999999999998764321 11 1135799998887777764 4556655543
No 293
>PRK06547 hypothetical protein; Provisional
Probab=96.00 E-value=0.01 Score=55.63 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=28.4
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 172 VIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 172 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+...+......+|+|.|++|+||||+|+.+.+...
T Consensus 6 ~~~~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~ 40 (172)
T PRK06547 6 IAARLCGGGMITVLIDGRSGSGKTTLAGALAARTG 40 (172)
T ss_pred HHHHhhcCCCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33445567788999999999999999999998753
No 294
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.98 E-value=0.0082 Score=54.72 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEE
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAE 218 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 218 (724)
..||.|+|.+|+||||||+.+.+...... ..+.+++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g--~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG--IKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT--S-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC--CcEEEec
Confidence 35899999999999999999999997643 3355554
No 295
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.016 Score=54.54 Aligned_cols=25 Identities=40% Similarity=0.482 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.|.|.|++|+||||+|+.+.+....
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i 26 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGL 26 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998654
No 296
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.89 E-value=0.0074 Score=58.12 Aligned_cols=25 Identities=48% Similarity=0.768 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
||+|.|++|+||||+|+.+......
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 7999999999999999999999875
No 297
>PRK07667 uridine kinase; Provisional
Probab=95.88 E-value=0.013 Score=56.37 Aligned_cols=37 Identities=27% Similarity=0.551 Sum_probs=28.8
Q ss_pred HHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 171 DVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 171 ~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.|.+.+. .+...+|+|.|.+|+||||+|+.+......
T Consensus 5 ~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 5 ELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3444443 344579999999999999999999998764
No 298
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.18 Score=51.69 Aligned_cols=47 Identities=26% Similarity=0.190 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHHHhc--------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 161 IFNSRKKIFQDVIEALK--------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~--------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.+-|-+..++.+.+... -..+.-|.++||+|.|||-||+.++.+...
T Consensus 93 DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga 153 (386)
T KOG0737|consen 93 DIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA 153 (386)
T ss_pred hccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC
Confidence 34455666666555432 124567889999999999999999998754
No 299
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.88 E-value=0.038 Score=54.29 Aligned_cols=43 Identities=23% Similarity=0.258 Sum_probs=32.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
.-.++.|.|.+|+||||||.+++...... -..++|++....+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCCCCH
Confidence 35689999999999999999999876532 23577887655543
No 300
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.88 E-value=0.0035 Score=36.35 Aligned_cols=21 Identities=29% Similarity=0.586 Sum_probs=15.3
Q ss_pred CCcEEEccCCcCcccchhhhc
Q 004895 621 KLEILSLRGAEIKQLPLQIGQ 641 (724)
Q Consensus 621 ~L~~L~l~~~~i~~lp~~i~~ 641 (724)
+|++||+++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467788888877777776654
No 301
>PTZ00035 Rad51 protein; Provisional
Probab=95.88 E-value=0.053 Score=56.77 Aligned_cols=92 Identities=18% Similarity=0.214 Sum_probs=55.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh---cc-CCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC---------Cchh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME---DN-VFDKVVMAEITKNPDAQKIQGELASDLGMNFDS---------NDLI 246 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~---------~~~~ 246 (724)
.-.++.|+|++|+|||||+..++-.... .. .-..++|++..+.++.+++ ..+++.++..... ....
T Consensus 117 ~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~~ 195 (337)
T PTZ00035 117 TGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYNH 195 (337)
T ss_pred CCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCCH
Confidence 3568999999999999999988765431 00 1234779998887777764 4556665543210 0001
Q ss_pred HHH---HHHHHHHHhcCCcEEEEEccccc
Q 004895 247 YHR---AKQLCQRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 247 ~~~---~~~l~~~l~~~kr~LlVlDdv~~ 272 (724)
++. ...+...+...+--|||+|-+..
T Consensus 196 e~~~~~l~~~~~~l~~~~~~lvVIDSita 224 (337)
T PTZ00035 196 EHQMQLLSQAAAKMAEERFALLIVDSATA 224 (337)
T ss_pred HHHHHHHHHHHHHhhccCccEEEEECcHH
Confidence 112 22223333344556899998843
No 302
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.067 Score=56.83 Aligned_cols=89 Identities=18% Similarity=0.199 Sum_probs=52.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcc--CCCeEEEEEEecC-CChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDN--VFDKVVMAEITKN-PDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQR 256 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~ 256 (724)
..++|.++|+.|+||||.+..++....... .-..+..+++... ....+-++..++.++.+.............+ ..
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L-~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI-TQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH-HH
Confidence 457999999999999999999998765321 1223555555432 1223336666777776543322122222222 22
Q ss_pred HhcCCcEEEEEcccc
Q 004895 257 LKKEKRVLIILDNIW 271 (724)
Q Consensus 257 l~~~kr~LlVlDdv~ 271 (724)
+ .+.-++++|...
T Consensus 252 ~--~~~DlVLIDTaG 264 (388)
T PRK12723 252 S--KDFDLVLVDTIG 264 (388)
T ss_pred h--CCCCEEEEcCCC
Confidence 2 244688889874
No 303
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.83 E-value=0.0079 Score=53.35 Aligned_cols=22 Identities=45% Similarity=0.897 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (724)
|.|.|++|+||||+|+.+.+..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999885
No 304
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.83 E-value=0.051 Score=58.83 Aligned_cols=87 Identities=22% Similarity=0.222 Sum_probs=48.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
.+++.++|++|+||||++..++........-..+..++..... ...+-+....+.++.+........+....+ ..+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l-~~~~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKAL-EQLR- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHH-HHhC-
Confidence 3599999999999999999998876511122346666653221 122334444555555432222122222222 2222
Q ss_pred CCcEEEEEccc
Q 004895 260 EKRVLIILDNI 270 (724)
Q Consensus 260 ~kr~LlVlDdv 270 (724)
..=++|+|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 3468888876
No 305
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.83 E-value=0.014 Score=62.99 Aligned_cols=50 Identities=12% Similarity=0.181 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCC
Q 004895 160 NIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVF 211 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 211 (724)
..++||++.++.+...+..+. -|.|.|++|+|||++|+.+.........|
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~~F 69 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNARAF 69 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccCcc
Confidence 357799999999988876444 57899999999999999999876543334
No 306
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=95.83 E-value=0.044 Score=53.76 Aligned_cols=41 Identities=22% Similarity=0.217 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP 223 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (724)
+|+|.|..|+||||||+.+.........=..+..++..+.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 58999999999999999999887531001224455554443
No 307
>PRK14974 cell division protein FtsY; Provisional
Probab=95.76 E-value=0.1 Score=54.43 Aligned_cols=57 Identities=32% Similarity=0.370 Sum_probs=37.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC--hHHHHHHHHHhhCCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD--AQKIQGELASDLGMN 239 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~l~~~i~~~l~~~ 239 (724)
+..+|.++|++|+||||++..++...... .+ .++.++. +.+. ..+-++..++.++.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~-g~-~V~li~~-Dt~R~~a~eqL~~~a~~lgv~ 197 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN-GF-SVVIAAG-DTFRAGAIEQLEEHAERLGVK 197 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc-CC-eEEEecC-CcCcHHHHHHHHHHHHHcCCc
Confidence 46799999999999999999999877643 33 2334432 2232 233455667777754
No 308
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.76 E-value=0.019 Score=55.41 Aligned_cols=108 Identities=12% Similarity=0.178 Sum_probs=56.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC--hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD--AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
.+|.|+|+.|+||||++..+....... ....+++ +.+... ... ...+..+-....+. ......+...+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~--~~~~i~t-~e~~~E~~~~~-~~~~i~q~~vg~~~----~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKN--KTHHILT-IEDPIEFVHES-KRSLINQREVGLDT----LSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhc--CCcEEEE-EcCCccccccC-ccceeeecccCCCc----cCHHHHHHHHhcC
Confidence 478999999999999999888776432 2333332 211110 000 00111111111111 1123345555554
Q ss_pred CCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccch
Q 004895 260 EKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL 309 (724)
Q Consensus 260 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 309 (724)
.+=.+++|++.+.+........ ...|..++.|+-..++
T Consensus 74 -~pd~ii~gEird~e~~~~~l~~-----------a~~G~~v~~t~Ha~~~ 111 (198)
T cd01131 74 -DPDVILVGEMRDLETIRLALTA-----------AETGHLVMSTLHTNSA 111 (198)
T ss_pred -CcCEEEEcCCCCHHHHHHHHHH-----------HHcCCEEEEEecCCcH
Confidence 4669999999766544332111 2235557777776654
No 309
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.75 E-value=0.046 Score=56.90 Aligned_cols=38 Identities=26% Similarity=0.340 Sum_probs=30.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEe
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEIT 220 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (724)
...+.++|+.|+|||+||..+++....++ ..++|+++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHH
Confidence 36799999999999999999999886542 246777653
No 310
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.049 Score=56.61 Aligned_cols=86 Identities=28% Similarity=0.363 Sum_probs=59.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCc-hhHHHHHHHHHHHhc
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSND-LIYHRAKQLCQRLKK 259 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 259 (724)
-++|.|-|-+|+|||||.-+++.+...+. .++||+--+ +..++ +--++.|+...+.-. ..+...+.+...+.+
T Consensus 93 Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE--S~~Qi-klRA~RL~~~~~~l~l~aEt~~e~I~~~l~~ 166 (456)
T COG1066 93 GSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE--SLQQI-KLRADRLGLPTNNLYLLAETNLEDIIAELEQ 166 (456)
T ss_pred ccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc--CHHHH-HHHHHHhCCCccceEEehhcCHHHHHHHHHh
Confidence 46899999999999999999999987653 677776544 33332 333556665432211 123345667777777
Q ss_pred CCcEEEEEccccc
Q 004895 260 EKRVLIILDNIWT 272 (724)
Q Consensus 260 ~kr~LlVlDdv~~ 272 (724)
.++-++|+|-+..
T Consensus 167 ~~p~lvVIDSIQT 179 (456)
T COG1066 167 EKPDLVVIDSIQT 179 (456)
T ss_pred cCCCEEEEeccce
Confidence 7899999999854
No 311
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.034 Score=57.03 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.-+-|..+|++|.|||-||+.|+.....
T Consensus 244 PWkgvLm~GPPGTGKTlLAKAvATEc~t 271 (491)
T KOG0738|consen 244 PWKGVLMVGPPGTGKTLLAKAVATECGT 271 (491)
T ss_pred ccceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence 3467889999999999999999998764
No 312
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.72 E-value=0.0094 Score=46.39 Aligned_cols=23 Identities=43% Similarity=0.746 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
+|.|.|..|+||||+++.+.+..
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999886
No 313
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.72 E-value=0.072 Score=57.39 Aligned_cols=91 Identities=20% Similarity=0.197 Sum_probs=49.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCCCCCC---CchhHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGMNFDS---NDLIYHRAKQLCQ 255 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 255 (724)
...++.++|++|+||||.|..++.....+..+ .++-|++... +...+-+....+..+.+.-. ............+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~ 176 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALE 176 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHH
Confidence 46799999999999999999999886432222 3444444321 12233344555665544211 1112233333333
Q ss_pred HHhcCCcEEEEEcccc
Q 004895 256 RLKKEKRVLIILDNIW 271 (724)
Q Consensus 256 ~l~~~kr~LlVlDdv~ 271 (724)
.......=++|+|-.-
T Consensus 177 ~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 177 YAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHhcCCCEEEEeCCC
Confidence 3332232377777764
No 314
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.066 Score=59.29 Aligned_cols=179 Identities=17% Similarity=0.161 Sum_probs=90.7
Q ss_pred ccccchHHH---HHHHHHHhcCCC---------ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHH
Q 004895 160 NIFNSRKKI---FQDVIEALKDDK---------LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQK 227 (724)
Q Consensus 160 ~~~~gR~~~---~~~l~~~L~~~~---------~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 227 (724)
..+.|.++. +.++++.|.++. ++-+.++|++|.|||.||+.++-...+- +.+.|... ..
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VP-------Ff~iSGS~-FV- 220 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-------FFSISGSD-FV- 220 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCC-------ceeccchh-hh-
Confidence 344576654 455566666432 4568899999999999999999988763 22333221 00
Q ss_pred HHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccccc------------c-cccccCCCCcCCCCCC
Q 004895 228 IQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELD------------K-IGIPYGDVDEKDKNDD 294 (724)
Q Consensus 228 l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~------------~-l~~~~~~~~~~~~~~~ 294 (724)
++.-.. .......++..-++.-++.+++|.++....-. + +...+ ...+.+..
T Consensus 221 ---emfVGv---------GAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlL---vEmDGF~~ 285 (596)
T COG0465 221 ---EMFVGV---------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLL---VEMDGFGG 285 (596)
T ss_pred ---hhhcCC---------CcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHH---hhhccCCC
Confidence 111111 11234445555444568999999986542111 1 11111 11223333
Q ss_pred CCCcEEEEEecccchhh----hhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhH
Q 004895 295 PRRCTIILTSRSRDLLC----IDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVA 364 (724)
Q Consensus 295 ~~~s~ilvTtR~~~v~~----~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 364 (724)
+.|-.|+..|-..+|.. ........+.++.-+-..-.++++-++....-.+. .+ ...|++.+-|.-.|
T Consensus 286 ~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~-Vd-l~~iAr~tpGfsGA 357 (596)
T COG0465 286 NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAED-VD-LKKIARGTPGFSGA 357 (596)
T ss_pred CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCc-CC-HHHHhhhCCCcccc
Confidence 44555555555555531 11122234444444445555566655543222222 12 23377777776543
No 315
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.69 E-value=0.0099 Score=53.96 Aligned_cols=24 Identities=46% Similarity=0.758 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+|.++|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 688999999999999999986553
No 316
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.69 E-value=0.054 Score=49.54 Aligned_cols=25 Identities=24% Similarity=0.662 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
+|.|+|.+|+||||+|+.+......
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999998753
No 317
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.68 E-value=0.07 Score=54.32 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
....+|+|.|+.|+||||+|+.+..-..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999998876654
No 318
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.65 E-value=0.079 Score=52.68 Aligned_cols=87 Identities=16% Similarity=0.258 Sum_probs=53.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC-----------------
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS----------------- 242 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~----------------- 242 (724)
.-+++.|+|.+|+|||+||.++......+ =..++|++..+. ..++.+.+ ++++....+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 45799999999999999999997654322 245888888654 34555543 333322110
Q ss_pred ---CchhHHHHHHHHHHHhcCCcEEEEEcccc
Q 004895 243 ---NDLIYHRAKQLCQRLKKEKRVLIILDNIW 271 (724)
Q Consensus 243 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv~ 271 (724)
..........+.+.+...+.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 01113344555555544456689999985
No 319
>PRK10867 signal recognition particle protein; Provisional
Probab=95.63 E-value=0.062 Score=57.93 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=35.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh--HHHHHHHHHhhCCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA--QKIQGELASDLGMN 239 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~l~~~i~~~l~~~ 239 (724)
...+|.++|++|+||||+|..++.....+.. ..++.|++. .+.. .+-++...+..+.+
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G-~kV~lV~~D-~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKK-KKVLLVAAD-VYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcC-CcEEEEEcc-ccchHHHHHHHHHHhhcCCe
Confidence 4679999999999999999999887764311 224444443 2222 22334445555543
No 320
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=95.60 E-value=0.23 Score=57.91 Aligned_cols=61 Identities=13% Similarity=0.187 Sum_probs=41.1
Q ss_pred ccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC
Q 004895 160 NIFNSRKKIFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN 222 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (724)
..++|+...+..+.+.+. .....-|.|+|..|+|||++|+.+++..... -...+.+++..-
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~ 438 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAM 438 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccC
Confidence 357788877777765554 2333467899999999999999998765321 123555666543
No 321
>PRK08233 hypothetical protein; Provisional
Probab=95.60 E-value=0.0099 Score=56.52 Aligned_cols=26 Identities=31% Similarity=0.555 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
..+|+|.|++|+||||||+.++....
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 322
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.59 E-value=0.77 Score=47.60 Aligned_cols=47 Identities=26% Similarity=0.201 Sum_probs=33.6
Q ss_pred eEecCCCCHHHHHHHHHHHhCCCCC--CCCchhHHHHHHHHhCCchhHH
Q 004895 319 MFWIDALSEEEALQLFEKIVGESTK--ASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 319 ~~~l~~L~~~e~~~Lf~~~~~~~~~--~~~l~~~~~~I~~~c~GlPLai 365 (724)
++++++++.+|+..++.......-. ...-+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999987742211 1233456667777779999643
No 323
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.59 E-value=0.053 Score=52.04 Aligned_cols=41 Identities=27% Similarity=0.428 Sum_probs=29.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCC--------CeEEEEEEecC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVF--------DKVVMAEITKN 222 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~vs~~ 222 (724)
.++.|+|++|+||||++..++........| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 488999999999999999999987643222 35788876654
No 324
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.59 E-value=0.16 Score=44.14 Aligned_cols=45 Identities=22% Similarity=0.347 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHHhc-------CCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 162 FNSRKKIFQDVIEALK-------DDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~-------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
++|..-..+.+++.+. ..+.-|++..|++|+|||.+++.+++..-
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly 78 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLY 78 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHH
Confidence 4455544455554443 23556999999999999999999999843
No 325
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.58 E-value=0.012 Score=57.36 Aligned_cols=27 Identities=41% Similarity=0.608 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.+..+|+|+|++|+||||||+.++...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999999876
No 326
>PRK04328 hypothetical protein; Provisional
Probab=95.58 E-value=0.07 Score=53.52 Aligned_cols=41 Identities=17% Similarity=0.227 Sum_probs=32.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN 222 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (724)
.-+++.|.|.+|+|||+||.++......+ -..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCC
Confidence 45689999999999999999987764322 345788887664
No 327
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.57 E-value=0.052 Score=57.54 Aligned_cols=87 Identities=25% Similarity=0.317 Sum_probs=53.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCc-hhHHHHHHHHHHHhc
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSND-LIYHRAKQLCQRLKK 259 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 259 (724)
-.++.|.|.+|+|||||+.+++...... -..++|++..+ +..++ ..-++.++...+.-. ........+.+.+..
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EE--s~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~ 156 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEE--SPEQI-KLRADRLGISTENLYLLAETNLEDILASIEE 156 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCc--CHHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHHh
Confidence 4689999999999999999999877543 24577887643 33333 222445554322110 001123445555554
Q ss_pred CCcEEEEEccccc
Q 004895 260 EKRVLIILDNIWT 272 (724)
Q Consensus 260 ~kr~LlVlDdv~~ 272 (724)
.+.-++|+|.+..
T Consensus 157 ~~~~lVVIDSIq~ 169 (372)
T cd01121 157 LKPDLVIIDSIQT 169 (372)
T ss_pred cCCcEEEEcchHH
Confidence 5677899999843
No 328
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.025 Score=49.95 Aligned_cols=44 Identities=25% Similarity=0.288 Sum_probs=31.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
.+-|.|.|-+|+||||||.+++.... .-|+++|+-....++...
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~-------~~~i~isd~vkEn~l~~g 50 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG-------LEYIEISDLVKENNLYEG 50 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC-------CceEehhhHHhhhcchhc
Confidence 35688999999999999999996543 237888765444444333
No 329
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.55 E-value=1.2 Score=46.99 Aligned_cols=58 Identities=26% Similarity=0.308 Sum_probs=39.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC--ChHHHHHHHHHhhCCCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP--DAQKIQGELASDLGMNF 240 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~~~l~~~~ 240 (724)
.+.||..+|.-|.||||.|-.+++.++.+ .+ ..-+...+.+ ..-+-++.+.++++.+.
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~-~~--kvllVaaD~~RpAA~eQL~~La~q~~v~~ 158 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKK-GK--KVLLVAADTYRPAAIEQLKQLAEQVGVPF 158 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHc-CC--ceEEEecccCChHHHHHHHHHHHHcCCce
Confidence 46799999999999999999999998762 22 2223233333 33445677777777653
No 330
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.55 E-value=0.13 Score=53.92 Aligned_cols=73 Identities=21% Similarity=0.297 Sum_probs=42.5
Q ss_pred HHHHHHHhcCC----CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCCCCC
Q 004895 169 FQDVIEALKDD----KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGMNFD 241 (724)
Q Consensus 169 ~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~~~ 241 (724)
...+..++.++ +.++|++||+.|+||||-....+..+.-...=..+..|+.... ....+-++..++-++.+..
T Consensus 187 l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 187 LRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred HHHHHHhhccccccccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 33444444433 4789999999999996654444444431112244677766432 2344455666677776654
No 331
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=95.55 E-value=0.022 Score=53.86 Aligned_cols=47 Identities=26% Similarity=0.304 Sum_probs=32.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 232 (724)
..+|+|-||-|+||||||+.++++.... +++-.+.+++=++....++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~-----~~~E~vednp~L~~FY~d~ 50 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK-----VFYELVEDNPFLDLFYEDP 50 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc-----eeeecccCChHHHHHHHhH
Confidence 4689999999999999999999988643 3334444544344444443
No 332
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.53 E-value=0.016 Score=56.36 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=38.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE---------ecCCChHHH--HHHHHHhhCCCCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI---------TKNPDAQKI--QGELASDLGMNFD 241 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v---------s~~~~~~~l--~~~i~~~l~~~~~ 241 (724)
+...|.++||+|+||||+.+.++.+...++... .-|++ .-+.++.+. .++..++.+..+.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~pp--YviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPP--YVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCCC--eEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 455788899999999999999999987653322 22232 223345443 3566666655443
No 333
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.035 Score=55.49 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=25.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
.++|.++||+|.|||+|++..++...++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 4789999999999999999999998663
No 334
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.49 E-value=0.022 Score=56.65 Aligned_cols=63 Identities=22% Similarity=0.422 Sum_probs=47.2
Q ss_pred HHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHH
Q 004895 170 QDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 170 ~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 232 (724)
.+|+..+. .++..+|+|.|.+|+|||||.-.+...+..+.+--.++=|+-|..++-..++.+=
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 34554443 5677899999999999999999999999877665566777777777655555443
No 335
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.49 E-value=0.12 Score=63.95 Aligned_cols=28 Identities=32% Similarity=0.275 Sum_probs=24.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
..+-|.++|++|+|||.||++++.+..+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 3567889999999999999999998754
No 336
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.0046 Score=60.82 Aligned_cols=86 Identities=22% Similarity=0.186 Sum_probs=46.7
Q ss_pred cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccc-cCCCCCcEEEcCCcccCC---cccccCCCCC
Q 004895 547 ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSL-GRLINLQTLCLDGWRLED---IAIVGQLKKL 622 (724)
Q Consensus 547 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i-~~l~~L~~L~L~~~~l~~---~~~~~~l~~L 622 (724)
.+++++.|++.++......-....+.+++.|++|+++.|++.+.-.++ -.+.+|++|-|.++.+.. -..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 455666666633222222222344566777777777777665321222 235567777776666554 2445566666
Q ss_pred cEEEccCCcC
Q 004895 623 EILSLRGAEI 632 (724)
Q Consensus 623 ~~L~l~~~~i 632 (724)
+.|.++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 6666666643
No 337
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=95.48 E-value=0.021 Score=54.68 Aligned_cols=51 Identities=24% Similarity=0.390 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEE
Q 004895 166 KKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAE 218 (724)
Q Consensus 166 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 218 (724)
..+-...++.|. ...++.+.|++|.|||.||...+-+.-..+.|+.++++.
T Consensus 6 ~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 6 NEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 344445556555 456999999999999999999998776668899888774
No 338
>PRK06762 hypothetical protein; Provisional
Probab=95.45 E-value=0.014 Score=54.64 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..+|.|+|++|+||||+|+.+.+..
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 339
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.45 E-value=0.091 Score=54.95 Aligned_cols=90 Identities=20% Similarity=0.185 Sum_probs=53.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK 258 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 258 (724)
+.+++.++|+.|+||||++..++.....+. ..+.+++..... ...+-++..++.++.+........+. ......+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL-~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAEL-EEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHH-HHHHHHHH
Confidence 457999999999999999999998765432 346666664322 23445566677676553222212222 22233333
Q ss_pred c-CCcEEEEEccccc
Q 004895 259 K-EKRVLIILDNIWT 272 (724)
Q Consensus 259 ~-~kr~LlVlDdv~~ 272 (724)
. +..=++++|-.-.
T Consensus 282 ~~~~~D~VLIDTAGr 296 (407)
T PRK12726 282 YVNCVDHILIDTVGR 296 (407)
T ss_pred hcCCCCEEEEECCCC
Confidence 1 2345778887743
No 340
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.44 E-value=0.014 Score=56.92 Aligned_cols=28 Identities=43% Similarity=0.536 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
....+|+|+|++|+||||||+.++....
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3457999999999999999999998764
No 341
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.44 E-value=0.069 Score=54.89 Aligned_cols=86 Identities=20% Similarity=0.208 Sum_probs=51.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC-----CchhHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS-----NDLIYHRAKQLCQ 255 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 255 (724)
-+++-|+|+.|+||||||..+....... -..++||+....++. ..++.+|.+.+. +...++....+.+
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~--g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~e~ 125 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQ--GGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIAEQ 125 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--T-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHHHH
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcc--cceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHHHH
Confidence 4699999999999999999999876543 345899998776654 445666654321 1112223333333
Q ss_pred HHhcCCcEEEEEcccccc
Q 004895 256 RLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 256 ~l~~~kr~LlVlDdv~~~ 273 (724)
.++.+.--++|+|-|-..
T Consensus 126 lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 126 LIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp HHHTTSESEEEEE-CTT-
T ss_pred HhhcccccEEEEecCccc
Confidence 334455568999988543
No 342
>PRK00889 adenylylsulfate kinase; Provisional
Probab=95.44 E-value=0.067 Score=50.47 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
...+|.|+|++|+||||+|+.++.....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999998864
No 343
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.44 E-value=0.014 Score=55.80 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
++++|.|+|++|+||||+|+.+....
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998765
No 344
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=95.43 E-value=0.026 Score=56.92 Aligned_cols=26 Identities=38% Similarity=0.570 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
+.|.|+|.+|+||||+|+.+......
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 47899999999999999999998775
No 345
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.42 E-value=0.1 Score=47.86 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=61.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec---CCChHHHHHHHHHhh-----CCC--CCCCchhH----
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK---NPDAQKIQGELASDL-----GMN--FDSNDLIY---- 247 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~l~~~i~~~l-----~~~--~~~~~~~~---- 247 (724)
..|-|++..|.||||+|.-.+-+.... .+ .+.++-.-+ ..+....++.+ ..+ +.. ........
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~-~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGH-GY-RVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 468888889999999999998877643 22 234433322 23333333333 111 111 11111111
Q ss_pred --HHHHHHHHHHhcCCcEEEEEcccccccc-----ccccccccCCCCcCCCCCCCCCcEEEEEecccc
Q 004895 248 --HRAKQLCQRLKKEKRVLIILDNIWTKLE-----LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD 308 (724)
Q Consensus 248 --~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 308 (724)
.......+.+..+.-=|+|||++-.... .+.+...+.. ...+.-||+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~--------rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKA--------KPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHc--------CCCCCEEEEECCCCC
Confidence 1122333344445556999999965422 2333233332 445678999999975
No 346
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.40 E-value=0.078 Score=53.05 Aligned_cols=94 Identities=20% Similarity=0.185 Sum_probs=58.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh--ccCCCeEEEEEEecCC-ChHHHHHHHHHhhCCC--------CCCCchh--
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME--DNVFDKVVMAEITKNP-DAQKIQGELASDLGMN--------FDSNDLI-- 246 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~~~--------~~~~~~~-- 246 (724)
+-+.++|.|-.|+|||+|+..+.++... +..-+.++++-+.+.. ...++..++...=..+ .++....
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 4457899999999999999999887641 1224678888887764 4566666665432111 1111101
Q ss_pred --HHHHHHHHHHHhc--CCcEEEEEcccccc
Q 004895 247 --YHRAKQLCQRLKK--EKRVLIILDNIWTK 273 (724)
Q Consensus 247 --~~~~~~l~~~l~~--~kr~LlVlDdv~~~ 273 (724)
....-.+.++++. ++++|+++||+-..
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~ 178 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDMTNY 178 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcChhHH
Confidence 1112334555542 68999999999554
No 347
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.39 E-value=0.089 Score=56.37 Aligned_cols=57 Identities=25% Similarity=0.230 Sum_probs=36.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGM 238 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~ 238 (724)
...+|.++|+.|+||||+|..++...+.+ .+ .++.|+.... ....+-++...+..+.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~-G~-kV~lV~~D~~R~aA~eQLk~~a~~~~v 156 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRK-GF-KPCLVCADTFRAGAFDQLKQNATKARI 156 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC-CC-CEEEEcCcccchhHHHHHHHHhhccCC
Confidence 46799999999999999999999877643 22 3455544221 1222333444555444
No 348
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.37 E-value=0.023 Score=55.75 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=38.9
Q ss_pred HHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHH
Q 004895 168 IFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQ 229 (724)
Q Consensus 168 ~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~ 229 (724)
....+++.+. .++..+|+|.|++|+|||||...+...+..+.+=-.++=|+-|..++-..++
T Consensus 14 ~~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 3445555544 3567899999999999999999999998865443345556656666544443
No 349
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.36 E-value=0.12 Score=52.32 Aligned_cols=58 Identities=31% Similarity=0.418 Sum_probs=37.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh--HHHHHHHHHhhCCC
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA--QKIQGELASDLGMN 239 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~l~~~i~~~l~~~ 239 (724)
.+.+++.++|++|+||||++..++...... . ..+.+++.. .+.. .+-+....+..+..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~-g-~~V~li~~D-~~r~~a~~ql~~~~~~~~i~ 129 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQ-G-KSVLLAAGD-TFRAAAIEQLEEWAKRLGVD 129 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc-C-CEEEEEeCC-CCCHHHHHHHHHHHHhCCeE
Confidence 346799999999999999999999877543 2 245566543 2322 23334455555543
No 350
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.35 E-value=0.037 Score=54.72 Aligned_cols=90 Identities=16% Similarity=0.233 Sum_probs=52.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCC--------------CC---
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNF--------------DS--- 242 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~--------------~~--- 242 (724)
.-+++.|.|++|+|||+|+.++......+. =..++|++..+. ..++.+.+- .++.+. ..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-GEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-T--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-CCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccccc
Confidence 457999999999999999999876553320 134788887554 344444432 333210 00
Q ss_pred ---CchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 243 ---NDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 243 ---~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
..........+.+.+...+...+|+|.+...
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1113344555555555445579999998544
No 351
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=95.35 E-value=0.034 Score=62.91 Aligned_cols=79 Identities=13% Similarity=0.171 Sum_probs=58.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhh
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDL 236 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 236 (724)
.....++|+++.++.|...+... +.+.++|++|+||||+|+.+.+.... .+++..+|..- ...+..++++.++.++
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~--~~~l~~G~~G~GKttla~~l~~~l~~-~~~~~~~~~~n-p~~~~~~~~~~v~~~~ 103 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR--RHVMMIGSPGTGKSMLAKAMAELLPK-EELQDILVYPN-PEDPNNPKIRTVPAGK 103 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC--CeEEEECCCCCcHHHHHHHHHHHcCh-HhHHHheEeeC-CCcchHHHHHHHHHhc
Confidence 34566889998888887776554 36889999999999999999987643 34677788655 3346677788888776
Q ss_pred CCC
Q 004895 237 GMN 239 (724)
Q Consensus 237 ~~~ 239 (724)
|..
T Consensus 104 G~~ 106 (637)
T PRK13765 104 GKQ 106 (637)
T ss_pred CHH
Confidence 643
No 352
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.33 E-value=0.088 Score=53.12 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=31.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK 221 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 221 (724)
.-+++.|.|++|+|||+||.+++.....+ =..++|++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecC
Confidence 45689999999999999999987765432 23578888764
No 353
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.33 E-value=0.031 Score=50.39 Aligned_cols=39 Identities=21% Similarity=0.404 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK 221 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 221 (724)
++|.|+|+.|+|||||++.+.+....+ .+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~-g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRR-GYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHc-CCceEEEEEccC
Confidence 489999999999999999999998753 455555555544
No 354
>PRK05439 pantothenate kinase; Provisional
Probab=95.30 E-value=0.13 Score=52.74 Aligned_cols=45 Identities=22% Similarity=0.181 Sum_probs=30.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP 223 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (724)
+..-+|+|.|.+|+||||+|+.+.........-..+.-++..+-.
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 456799999999999999999998866432111234445554433
No 355
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.30 E-value=0.059 Score=49.97 Aligned_cols=25 Identities=40% Similarity=0.502 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..++.|.||.|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578899999999999999998876
No 356
>PRK03839 putative kinase; Provisional
Probab=95.29 E-value=0.016 Score=55.08 Aligned_cols=24 Identities=46% Similarity=0.679 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.|.|+|++|+||||+|+.+++...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999874
No 357
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.28 E-value=0.014 Score=49.99 Aligned_cols=24 Identities=42% Similarity=0.733 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
|.|+|++|+|||+||+.++.+...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999988754
No 358
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.21 E-value=0.099 Score=56.98 Aligned_cols=60 Identities=20% Similarity=0.226 Sum_probs=38.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec-CCChHHHHHHHHHhhCCCC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK-NPDAQKIQGELASDLGMNF 240 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~i~~~l~~~~ 240 (724)
..|++++|+.|+||||++.+++.....+..-..+..++... .....+-++...+.++...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv 316 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPV 316 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCe
Confidence 36999999999999999999998775432222355555432 1223344455566666543
No 359
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.29 Score=47.45 Aligned_cols=48 Identities=25% Similarity=0.285 Sum_probs=37.7
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 159 YNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...+-|-++.++++++++. -...+-+..+|++|.|||-+|+..+.+..
T Consensus 170 YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~ 230 (424)
T KOG0652|consen 170 YSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTN 230 (424)
T ss_pred ccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhcc
Confidence 4456688999999988864 12456788999999999999999887654
No 360
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.20 E-value=0.07 Score=50.88 Aligned_cols=44 Identities=16% Similarity=0.176 Sum_probs=31.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
+.|.|++|+|||+||.++....... =..++|++... +..++.+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~--~~~~~~~~ 45 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEE--SPEELIEN 45 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCC--CHHHHHHH
Confidence 6789999999999999998876432 13477887654 34444433
No 361
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.19 E-value=0.013 Score=59.33 Aligned_cols=88 Identities=15% Similarity=0.298 Sum_probs=46.4
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh-hCCCCCCCchhHH
Q 004895 170 QDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD-LGMNFDSNDLIYH 248 (724)
Q Consensus 170 ~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~-l~~~~~~~~~~~~ 248 (724)
..+++.+...+. -+.++|+.|+|||++++...+...... | .+.-++.+...+...++ .+++. +.... ...
T Consensus 23 ~~ll~~l~~~~~-pvLl~G~~GtGKT~li~~~l~~l~~~~-~-~~~~~~~s~~Tts~~~q-~~ie~~l~k~~-~~~---- 93 (272)
T PF12775_consen 23 SYLLDLLLSNGR-PVLLVGPSGTGKTSLIQNFLSSLDSDK-Y-LVITINFSAQTTSNQLQ-KIIESKLEKRR-GRV---- 93 (272)
T ss_dssp HHHHHHHHHCTE-EEEEESSTTSSHHHHHHHHHHCSTTCC-E-EEEEEES-TTHHHHHHH-HCCCTTECECT-TEE----
T ss_pred HHHHHHHHHcCC-cEEEECCCCCchhHHHHhhhccCCccc-c-ceeEeeccCCCCHHHHH-HHHhhcEEcCC-CCC----
Confidence 345555544444 457999999999999999886543321 1 13344555443333332 22221 11100 000
Q ss_pred HHHHHHHHHhcCCcEEEEEccccc
Q 004895 249 RAKQLCQRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 249 ~~~~l~~~l~~~kr~LlVlDdv~~ 272 (724)
. .-..+|+.++++||+.-
T Consensus 94 -----~-gP~~~k~lv~fiDDlN~ 111 (272)
T PF12775_consen 94 -----Y-GPPGGKKLVLFIDDLNM 111 (272)
T ss_dssp -----E-EEESSSEEEEEEETTT-
T ss_pred -----C-CCCCCcEEEEEecccCC
Confidence 0 00136889999999853
No 362
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.018 Score=55.10 Aligned_cols=28 Identities=43% Similarity=0.659 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
++-+|+|.|.+|+||||+|+.++..+..
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~ 34 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGV 34 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 4579999999999999999999998864
No 363
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.17 E-value=0.14 Score=54.80 Aligned_cols=61 Identities=21% Similarity=0.229 Sum_probs=37.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCCCCC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGMNFD 241 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~~~ 241 (724)
..+++++|+.|+||||++..++.........+.+..++.... ....+-+..+.+.++.+..
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~ 252 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVR 252 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCcee
Confidence 469999999999999999998876533222334444443321 2233334555666665543
No 364
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.15 E-value=0.16 Score=57.32 Aligned_cols=63 Identities=13% Similarity=0.120 Sum_probs=42.8
Q ss_pred ccccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC
Q 004895 158 DYNIFNSRKKIFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN 222 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (724)
....++|+...+.++.+.+. .....-|.|+|..|+|||++|+.+.+.-... -...+.++++.-
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~--~~pfv~i~c~~~ 258 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA--KRPFVKVNCAAL 258 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC--CCCeEEeecCCC
Confidence 34567898888888877664 2233356799999999999999998864321 122455555543
No 365
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.15 E-value=0.077 Score=51.52 Aligned_cols=97 Identities=28% Similarity=0.360 Sum_probs=56.7
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHHHHhhCC-------C-CC
Q 004895 172 VIEALKD-DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGELASDLGM-------N-FD 241 (724)
Q Consensus 172 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~~-------~-~~ 241 (724)
.++.+.. .+-..++|.|.+|+|||+|+..+.+.... +.++++.+.+.. ...++.+++...-.. . .+
T Consensus 5 ~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~----d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~ 80 (215)
T PF00006_consen 5 AIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQDA----DVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSD 80 (215)
T ss_dssp HHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCTT----TEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETT
T ss_pred eeccccccccCCEEEEEcCcccccchhhHHHHhcccc----cceeeeeccccchhHHHHHHHHhhcccccccccccccch
Confidence 3444431 23357899999999999999999998743 445788887653 455555555432100 0 11
Q ss_pred CCchhH----HHHHHHHHHHh-cCCcEEEEEccccc
Q 004895 242 SNDLIY----HRAKQLCQRLK-KEKRVLIILDNIWT 272 (724)
Q Consensus 242 ~~~~~~----~~~~~l~~~l~-~~kr~LlVlDdv~~ 272 (724)
+..... ...-.+.+++. +++++|+++||+-.
T Consensus 81 ~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr 116 (215)
T PF00006_consen 81 EPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTR 116 (215)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHH
T ss_pred hhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHH
Confidence 111011 01122233332 47999999999843
No 366
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.14 E-value=0.012 Score=57.47 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
.+++.|+|+.|.|||||.+.+...
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~~ 52 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVALI 52 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 488999999999999999999854
No 367
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.13 E-value=0.058 Score=57.04 Aligned_cols=47 Identities=26% Similarity=0.303 Sum_probs=36.0
Q ss_pred cccchHHHHHHHHHHhcCC--------------CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 161 IFNSRKKIFQDVIEALKDD--------------KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~~--------------~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.++|.++.++.+.-++... ..+.|.++|++|+|||++|+.++.....
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~ 73 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANA 73 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678888777776554421 2367899999999999999999998754
No 368
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=95.12 E-value=0.044 Score=52.57 Aligned_cols=51 Identities=25% Similarity=0.508 Sum_probs=36.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD 241 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~ 241 (724)
.|+|+|-||+||||+|.........++.| .++-|+...++++ .++||...+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL-------~~~LGve~~ 52 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL-------PEALGVEEP 52 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh-------HHhcCCCCC
Confidence 68999999999999999977777665433 3555666665554 445666654
No 369
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.12 E-value=0.088 Score=49.14 Aligned_cols=80 Identities=16% Similarity=0.193 Sum_probs=45.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcC-Cc
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKE-KR 262 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~-kr 262 (724)
+.|.|.+|+|||++|.++.... ...++|+.-.+.++. ++.+.|.+--........ ..+....+.+.+... +.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~-----~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~-t~E~~~~l~~~l~~~~~~ 74 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL-----GGPVTYIATAEAFDD-EMAERIARHRKRRPAHWR-TIETPRDLVSALKELDPG 74 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc-----CCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCce-EeecHHHHHHHHHhcCCC
Confidence 6789999999999999998652 235777776666654 344444332211111111 111223344444221 33
Q ss_pred EEEEEccc
Q 004895 263 VLIILDNI 270 (724)
Q Consensus 263 ~LlVlDdv 270 (724)
-.+++|.+
T Consensus 75 ~~VLIDcl 82 (169)
T cd00544 75 DVVLIDCL 82 (169)
T ss_pred CEEEEEcH
Confidence 47999997
No 370
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.09 E-value=0.16 Score=48.88 Aligned_cols=52 Identities=17% Similarity=0.247 Sum_probs=38.9
Q ss_pred cccccccchHHHHHHHHHHh----cCCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 157 KDYNIFNSRKKIFQDVIEAL----KDDKLNIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
.+...++|-+...+.|++.- ......-|.+||.-|+|||+|++.+.+....+
T Consensus 57 i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~ 112 (287)
T COG2607 57 IDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE 112 (287)
T ss_pred cCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc
Confidence 34456678777777666543 34445678899999999999999999998764
No 371
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.08 E-value=0.091 Score=58.27 Aligned_cols=87 Identities=17% Similarity=0.273 Sum_probs=56.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC---------------CCc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD---------------SND 244 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~---------------~~~ 244 (724)
.-+++.|.|++|+|||||+.+++.....+ =..++|++..+ +..++...+ +.++.+.. ...
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eE--s~~~i~~~~-~~lg~~~~~~~~~g~l~~~~~~p~~~ 336 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACAN--KERAILFAYEE--SRAQLLRNA-YSWGIDFEEMEQQGLLKIICAYPESA 336 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC--CHHHHHHHH-HHcCCChHHHhhCCcEEEEEcccccC
Confidence 45799999999999999999999887543 23567776654 444555553 44543211 111
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEcccc
Q 004895 245 LIYHRAKQLCQRLKKEKRVLIILDNIW 271 (724)
Q Consensus 245 ~~~~~~~~l~~~l~~~kr~LlVlDdv~ 271 (724)
..++.+..+.+.+...+.-.+|+|.+.
T Consensus 337 ~~~~~~~~i~~~i~~~~~~~vvIDsi~ 363 (484)
T TIGR02655 337 GLEDHLQIIKSEIADFKPARIAIDSLS 363 (484)
T ss_pred ChHHHHHHHHHHHHHcCCCEEEEcCHH
Confidence 124456666666665566688888874
No 372
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.07 E-value=0.084 Score=52.14 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=52.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec-----CCChHHHHHHHHHhhCCCC------CCCchh-H
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK-----NPDAQKIQGELASDLGMNF------DSNDLI-Y 247 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~l~~~i~~~l~~~~------~~~~~~-~ 247 (724)
+-.+++|||..|+||||+++.+..-.... .+.+++.-.+ .....+...++++.++... +.+-.. .
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt---~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPT---SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCC---CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 45689999999999999999998876532 3344443221 1123344566677666432 111001 1
Q ss_pred HHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 248 HRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 248 ~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
.+.-.+.+.+. -++-++|.|..-+.
T Consensus 115 rQRi~IARALa-l~P~liV~DEpvSa 139 (268)
T COG4608 115 RQRIGIARALA-LNPKLIVADEPVSA 139 (268)
T ss_pred hhhHHHHHHHh-hCCcEEEecCchhh
Confidence 11223344444 47889999997554
No 373
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.05 E-value=0.033 Score=54.31 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=15.2
Q ss_pred hhcCCCCCcEEEeecccccc
Q 004895 695 ELKGLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 695 ~L~~L~~L~~L~l~~n~~~~ 714 (724)
.+..+++|+.|||.-|-++.
T Consensus 209 gl~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 209 GLFYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred HHHHhCcceeeeccccchhh
Confidence 35567889999999887654
No 374
>PRK00625 shikimate kinase; Provisional
Probab=95.04 E-value=0.02 Score=53.70 Aligned_cols=24 Identities=42% Similarity=0.584 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.|.++||+|+||||+++.+.+...
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999988764
No 375
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=95.03 E-value=0.089 Score=56.61 Aligned_cols=93 Identities=18% Similarity=0.324 Sum_probs=59.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHHHHhhCCC--------CCCCchh----
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGELASDLGMN--------FDSNDLI---- 246 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~~~--------~~~~~~~---- 246 (724)
+-..++|.|.+|+|||+|+..+.+.... .+-+.++|+-+.+.. ...++..++...-..+ .+++...
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~~-~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMVG-QHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 4457899999999999999999888653 234678888887654 3455555555431111 1111111
Q ss_pred HHHHHHHHHHHh--cCCcEEEEEcccccc
Q 004895 247 YHRAKQLCQRLK--KEKRVLIILDNIWTK 273 (724)
Q Consensus 247 ~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 273 (724)
...+-.+.++++ +++++|+++||+-..
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 244 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNIFRF 244 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecChHHH
Confidence 112334556665 379999999999543
No 376
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=95.02 E-value=0.31 Score=50.98 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=29.4
Q ss_pred cchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 163 NSRKKIFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 163 ~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
+|+...+.++.+.+. .....-|.|+|..|+||+++|+.+.+.-
T Consensus 2 iG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 455555555555443 1223356899999999999999998754
No 377
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=95.00 E-value=0.1 Score=60.00 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=56.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC-----CchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS-----NDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 254 (724)
.-+++-|+|++|+||||||.+++...... =..++|++..+.++. ..++++|.+.+. ....+.....+.
T Consensus 59 ~GsiteI~G~~GsGKTtLal~~~~~a~~~--G~~v~yId~E~t~~~-----~~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 59 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGVAAFIDAEHALDP-----DYAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchhH-----HHHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 35788999999999999998877654332 245899988777663 367777765321 111233333344
Q ss_pred HHHhcCCcEEEEEccccc
Q 004895 255 QRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~~ 272 (724)
..+..++.-|||+|-+-.
T Consensus 132 ~lv~~~~~~LVVIDSI~a 149 (790)
T PRK09519 132 MLIRSGALDIVVIDSVAA 149 (790)
T ss_pred HHhhcCCCeEEEEcchhh
Confidence 444455678999999853
No 378
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.99 E-value=0.16 Score=51.17 Aligned_cols=88 Identities=20% Similarity=0.252 Sum_probs=55.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh-hCC---CCC-CCchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD-LGM---NFD-SNDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~-l~~---~~~-~~~~~~~~~~~l~ 254 (724)
.-+++=|+|+.|+||||+|.+++-..... -..++|++.-..++++.+ +.+... +.. ..+ ........+..+.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~--g~~a~fIDtE~~l~p~r~-~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKP--GGKAAFIDTEHALDPERA-KQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcC--CCeEEEEeCCCCCCHHHH-HHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 45688999999999999999988776532 347899999998988765 444444 321 111 1111122222232
Q ss_pred HHHhcCCcEEEEEcccc
Q 004895 255 QRLKKEKRVLIILDNIW 271 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~ 271 (724)
....+ +--|+|+|.+-
T Consensus 136 ~~~~~-~i~LvVVDSva 151 (279)
T COG0468 136 RSGAE-KIDLLVVDSVA 151 (279)
T ss_pred HhccC-CCCEEEEecCc
Confidence 22221 35699999884
No 379
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.11 Score=51.12 Aligned_cols=127 Identities=20% Similarity=0.237 Sum_probs=70.7
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 159 YNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
...+-|-+..+++|.+... -...+-|.++|.+|.|||-||++|+|..... |-.+
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--FlRv----------- 250 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--FLRV----------- 250 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh--hhhh-----------
Confidence 3445577888888877654 1235567799999999999999999976542 3111
Q ss_pred HHHHHHHH-HhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--cc-------cc-ccccCCCCcCCCCCC
Q 004895 226 QKIQGELA-SDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--LD-------KI-GIPYGDVDEKDKNDD 294 (724)
Q Consensus 226 ~~l~~~i~-~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~-------~l-~~~~~~~~~~~~~~~ 294 (724)
+-.+++ ..+|. ......++++.-....+..+++|.++.... ++ ++ ...+..+++++.+..
T Consensus 251 --vGseLiQkylGd-------GpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds 321 (440)
T KOG0726|consen 251 --VGSELIQKYLGD-------GPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS 321 (440)
T ss_pred --hhHHHHHHHhcc-------chHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc
Confidence 111222 22321 122445555554445678888898854311 00 00 011111223334445
Q ss_pred CCCcEEEEEeccc
Q 004895 295 PRRCTIILTSRSR 307 (724)
Q Consensus 295 ~~~s~ilvTtR~~ 307 (724)
....+||+.|..-
T Consensus 322 rgDvKvimATnri 334 (440)
T KOG0726|consen 322 RGDVKVIMATNRI 334 (440)
T ss_pred cCCeEEEEecccc
Confidence 5567888777653
No 380
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.2 Score=57.54 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=38.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCCCC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGMNF 240 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~~ 240 (724)
..|++++|+.|+||||++.+++...........+..++.... ....+-++...+.++.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPV 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCc
Confidence 469999999999999999999987743222234555554321 123445566666666544
No 381
>PRK04040 adenylate kinase; Provisional
Probab=94.93 E-value=0.024 Score=54.06 Aligned_cols=25 Identities=32% Similarity=0.600 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+|.|+|++|+||||+++.+.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998874
No 382
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.92 E-value=0.019 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
||.|+|++|+||||+|+.++...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999998866
No 383
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.90 E-value=0.027 Score=53.09 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=23.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...|.|+|++|+||||+|+.+++...
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999998874
No 384
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.16 Score=58.79 Aligned_cols=101 Identities=18% Similarity=0.230 Sum_probs=64.3
Q ss_pred ccchHHHHHHHHHHhcC------C--CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHH
Q 004895 162 FNSRKKIFQDVIEALKD------D--KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELA 233 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~~------~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 233 (724)
++|.++.+..|.+.+.. . ....+.+.|+.|+|||-||+.++...... .+..+-++.|+. .. +.
T Consensus 564 V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs--e~~~IriDmse~------~e-vs 634 (898)
T KOG1051|consen 564 VIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS--EENFIRLDMSEF------QE-VS 634 (898)
T ss_pred ccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC--ccceEEechhhh------hh-hh
Confidence 55677777777776641 1 35577889999999999999999877432 344555555432 22 33
Q ss_pred HhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 234 SDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
+.++.+..-- ..+...++-+.+++....+|+||||+..
T Consensus 635 kligsp~gyv--G~e~gg~LteavrrrP~sVVLfdeIEkA 672 (898)
T KOG1051|consen 635 KLIGSPPGYV--GKEEGGQLTEAVKRRPYSVVLFEEIEKA 672 (898)
T ss_pred hccCCCcccc--cchhHHHHHHHHhcCCceEEEEechhhc
Confidence 3334332111 1234557777887666679999999765
No 385
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.88 E-value=0.096 Score=52.87 Aligned_cols=116 Identities=17% Similarity=0.138 Sum_probs=62.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCC-CC-------CCCchhHHH
Q 004895 178 DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGM-NF-------DSNDLIYHR 249 (724)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~-~~-------~~~~~~~~~ 249 (724)
..+..-++|+|+.|.|||||.+.+...... ..+.+++.-.+-... +-..++...... .. +-.+ ....
T Consensus 108 ~~~~~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~-d~~~ei~~~~~~~~q~~~~~r~~v~~-~~~k 182 (270)
T TIGR02858 108 NNRVLNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIV-DERSEIAGCVNGVPQHDVGIRTDVLD-GCPK 182 (270)
T ss_pred CCCeeEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecc-hhHHHHHHHhcccccccccccccccc-cchH
Confidence 344568899999999999999999987653 233444421111111 111233322211 10 0000 0111
Q ss_pred HHHHHHHHhcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccch
Q 004895 250 AKQLCQRLKKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL 309 (724)
Q Consensus 250 ~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 309 (724)
...+...+..-.+-++++|.+-....+..+...+ ..|..||+||-...+
T Consensus 183 ~~~~~~~i~~~~P~villDE~~~~e~~~~l~~~~-----------~~G~~vI~ttH~~~~ 231 (270)
T TIGR02858 183 AEGMMMLIRSMSPDVIVVDEIGREEDVEALLEAL-----------HAGVSIIATAHGRDV 231 (270)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHH-----------hCCCEEEEEechhHH
Confidence 2234444443467899999987655444442222 246779999987655
No 386
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.87 E-value=0.09 Score=56.92 Aligned_cols=94 Identities=19% Similarity=0.304 Sum_probs=59.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHHHHhhCCC--------CCCCchh---
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGELASDLGMN--------FDSNDLI--- 246 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~~~--------~~~~~~~--- 246 (724)
.+-..++|.|.+|+|||||+..+.+..... +-+.++++-+.+.. ...++..++...-..+ .+++...
T Consensus 141 gkGQR~gIfa~~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 141 AKGGKTGLFGGAGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 345689999999999999999999887643 56778888776553 3455555555432111 1221111
Q ss_pred -HHHHHHHHHHHh--cCCcEEEEEcccccc
Q 004895 247 -YHRAKQLCQRLK--KEKRVLIILDNIWTK 273 (724)
Q Consensus 247 -~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 273 (724)
...+-.+.++++ +++++|+++|++-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 112234455554 278999999999543
No 387
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.87 E-value=0.036 Score=57.84 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=42.9
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 158 DYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
+...++|.++.+..|+..+.++...-|.|.|..|+||||+|+.+++-...
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~ 64 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPE 64 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 45677899999999888888888888889999999999999999887643
No 388
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.86 E-value=0.046 Score=57.07 Aligned_cols=47 Identities=21% Similarity=0.330 Sum_probs=39.8
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 159 YNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
...++|.++.+..++-.+.++...-+.|.|..|+|||||++.+..-.
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 34678999999888777777777778899999999999999998765
No 389
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.82 E-value=0.066 Score=57.50 Aligned_cols=91 Identities=19% Similarity=0.262 Sum_probs=49.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhh-----CC--CCCCCchhH----H
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDL-----GM--NFDSNDLIY----H 248 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l-----~~--~~~~~~~~~----~ 248 (724)
.-..++|+|+.|+|||||++.+...... ...+++..--...++.++....+... +. +.+++.... .
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~p---d~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADAF---DTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCC---CeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 3458999999999999999988764432 22344443323344444444333322 11 111111111 1
Q ss_pred HHHHHHHHHh-cCCcEEEEEcccccc
Q 004895 249 RAKQLCQRLK-KEKRVLIILDNIWTK 273 (724)
Q Consensus 249 ~~~~l~~~l~-~~kr~LlVlDdv~~~ 273 (724)
..-.+.+++. +++++|+++||+-..
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~DslTr~ 266 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSVTRF 266 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccchHHH
Confidence 1222334442 478999999998543
No 390
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=94.78 E-value=0.56 Score=52.46 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=43.5
Q ss_pred cccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC
Q 004895 159 YNIFNSRKKIFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP 223 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (724)
...++|+...+.++.+.+. .....-|.|+|..|+|||++|+.+.+..... -...+.|+++.-+
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~ 250 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALP 250 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCC
Confidence 3457788888877777665 2334467799999999999999998865321 1235566666543
No 391
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.77 E-value=0.033 Score=51.82 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=25.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
...+++|+|..|+|||||++.+......
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4569999999999999999999998865
No 392
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.76 E-value=0.021 Score=55.15 Aligned_cols=23 Identities=48% Similarity=0.809 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
+|+|.|+.|+||||||+.+....
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 393
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.75 E-value=0.01 Score=34.32 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=13.7
Q ss_pred CceEEEcCCCcCCCCCccccC
Q 004895 576 ELKVLDFTGIRFSPLPSSLGR 596 (724)
Q Consensus 576 ~L~~L~l~~~~~~~lp~~i~~ 596 (724)
+|++||+++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 366777777777766666544
No 394
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.72 E-value=0.067 Score=50.64 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.-.+++|+|+.|.|||||++.+.-...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 345899999999999999999987653
No 395
>PF13245 AAA_19: Part of AAA domain
Probab=94.71 E-value=0.077 Score=42.05 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=18.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
+.+++.|.|++|.|||+++.......
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678889999999995554444443
No 396
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.67 E-value=0.11 Score=56.71 Aligned_cols=87 Identities=26% Similarity=0.332 Sum_probs=52.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCc-hhHHHHHHHHHHHhc
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSND-LIYHRAKQLCQRLKK 259 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~~ 259 (724)
-.++.|.|.+|+|||||+.+++...... -..++|++..+. ..++.. -++.++...+.-. ........+.+.+.+
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~ 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh
Confidence 4589999999999999999999877532 235788876543 334322 2455554321100 000123344455544
Q ss_pred CCcEEEEEccccc
Q 004895 260 EKRVLIILDNIWT 272 (724)
Q Consensus 260 ~kr~LlVlDdv~~ 272 (724)
.+.-++|+|.+..
T Consensus 155 ~~~~lVVIDSIq~ 167 (446)
T PRK11823 155 EKPDLVVIDSIQT 167 (446)
T ss_pred hCCCEEEEechhh
Confidence 4667899999843
No 397
>PRK06851 hypothetical protein; Provisional
Probab=94.67 E-value=0.41 Score=50.33 Aligned_cols=44 Identities=32% Similarity=0.262 Sum_probs=33.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC
Q 004895 178 DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN 222 (724)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (724)
.+--+++.|.|++|+|||||++.++.....+ .++..++-|.+.+
T Consensus 211 ~~~~~~~~i~G~pG~GKstl~~~i~~~a~~~-G~~v~~~hC~~dP 254 (367)
T PRK06851 211 EGVKNRYFLKGRPGTGKSTMLKKIAKAAEER-GFDVEVYHCGFDP 254 (367)
T ss_pred cccceEEEEeCCCCCcHHHHHHHHHHHHHhC-CCeEEEEeCCCCC
Confidence 3445789999999999999999999998754 4665555554443
No 398
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.64 E-value=0.056 Score=62.97 Aligned_cols=191 Identities=16% Similarity=0.196 Sum_probs=89.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH-hhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCC----CCCchhHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQV-MEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNF----DSNDLIYHRAKQL 253 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~----~~~~~~~~~~~~l 253 (724)
.+.+++.|+|+.|.|||||.+.+.-.. ..... .+|.+.....+ ..+..+...++... .... -......+
T Consensus 320 ~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G----~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LSt-fS~~m~~~ 393 (771)
T TIGR01069 320 FEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG----IPIPANEHSEI-PYFEEIFADIGDEQSIEQNLST-FSGHMKNI 393 (771)
T ss_pred CCceEEEEECCCCCCchHHHHHHHHHHHHHHhC----CCccCCccccc-cchhheeeecChHhHHhhhhhH-HHHHHHHH
Confidence 345799999999999999999998762 11111 12222111000 00111111111100 0000 01111222
Q ss_pred HHHHhc-CCcEEEEEcccccccccc---cccc-ccCCCCcCCCCCCCCCcEEEEEecccchhhhhcCCCc--eEecCCCC
Q 004895 254 CQRLKK-EKRVLIILDNIWTKLELD---KIGI-PYGDVDEKDKNDDPRRCTIILTSRSRDLLCIDMNSQK--MFWIDALS 326 (724)
Q Consensus 254 ~~~l~~-~kr~LlVlDdv~~~~~~~---~l~~-~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~--~~~l~~L~ 326 (724)
...+.. ..+-|+++|..-...+.. .+.. .+..+ ...|+.+|+||-...+......... ...+. ++
T Consensus 394 ~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l-------~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d 465 (771)
T TIGR01069 394 SAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL-------LKQNAQVLITTHYKELKALMYNNEGVENASVL-FD 465 (771)
T ss_pred HHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH-------HhcCCEEEEECChHHHHHHhcCCCCeEEeEEE-Ec
Confidence 222221 467999999986543321 1110 11000 2357889999998776422111111 11111 11
Q ss_pred HHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004895 327 EEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIWKDALNKLTS 389 (724)
Q Consensus 327 ~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~~ 389 (724)
. +... |..+.-... +. ...|-+|++++ |+|-.+.--|..+.......++.+++.+..
T Consensus 466 ~-~~l~-p~Ykl~~G~--~g-~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 466 E-ETLS-PTYKLLKGI--PG-ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred C-CCCc-eEEEECCCC--CC-CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1 1000 000010011 11 34577888887 788888777777765555667777666544
No 399
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.64 E-value=0.12 Score=56.62 Aligned_cols=90 Identities=21% Similarity=0.241 Sum_probs=51.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEE-EEEEecCCChHHHHHHHHHhhC-----CCCCCCchh----HH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVV-MAEITKNPDAQKIQGELASDLG-----MNFDSNDLI----YH 248 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~l~~~i~~~l~-----~~~~~~~~~----~~ 248 (724)
+.-....|+|++|+|||||++.+++.... .+-++.+ .+-|.+.+... .+|-+.+. ...+..... ..
T Consensus 414 GkGQR~LIvgpp~aGKTtLL~~IAn~i~~-n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVasT~D~p~~~~~~~a~ 489 (672)
T PRK12678 414 GKGQRGLIVSPPKAGKTTILQNIANAITT-NNPECHLMVVLVDERPEEV---TDMQRSVKGEVIASTFDRPPSDHTTVAE 489 (672)
T ss_pred ccCCEeEEeCCCCCCHHHHHHHHHHHHhh-cCCCeEEEEEEEeCchhhH---HHHHHhccceEEEECCCCCHHHHHHHHH
Confidence 34457899999999999999999987754 3445543 44455443221 22333331 112222211 11
Q ss_pred HHHHHHHHH-hcCCcEEEEEccccc
Q 004895 249 RAKQLCQRL-KKEKRVLIILDNIWT 272 (724)
Q Consensus 249 ~~~~l~~~l-~~~kr~LlVlDdv~~ 272 (724)
.+..+.+++ ..++.+||++|++-.
T Consensus 490 ~ai~~Ae~fre~G~dVlillDSlTR 514 (672)
T PRK12678 490 LAIERAKRLVELGKDVVVLLDSITR 514 (672)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCchH
Confidence 222333444 247899999999854
No 400
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.62 E-value=0.026 Score=53.55 Aligned_cols=23 Identities=39% Similarity=0.712 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
+|+|.|.+|+||||+|+.+....
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998875
No 401
>COG4240 Predicted kinase [General function prediction only]
Probab=94.62 E-value=0.25 Score=47.04 Aligned_cols=83 Identities=13% Similarity=0.119 Sum_probs=51.5
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCC----CCCCCchhHHHHHHH
Q 004895 178 DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGM----NFDSNDLIYHRAKQL 253 (724)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~----~~~~~~~~~~~~~~l 253 (724)
.++.-+++|.|+-|+||||++..+++....+.. ..++..++.+-+-...-...++++... .......+......+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnV 125 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNV 125 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHH
Confidence 356679999999999999999999999887643 356666665544333334455555321 111112234455556
Q ss_pred HHHHhcCC
Q 004895 254 CQRLKKEK 261 (724)
Q Consensus 254 ~~~l~~~k 261 (724)
.+.+.+++
T Consensus 126 Lnai~~g~ 133 (300)
T COG4240 126 LNAIARGG 133 (300)
T ss_pred HHHHhcCC
Confidence 66665554
No 402
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.62 E-value=0.027 Score=51.29 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+|.|+|+.|+||||+|+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~ 24 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG 24 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998764
No 403
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.61 E-value=0.27 Score=53.12 Aligned_cols=94 Identities=19% Similarity=0.333 Sum_probs=58.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHHHHhhCCC--------CCCCchhH--
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGELASDLGMN--------FDSNDLIY-- 247 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~~~--------~~~~~~~~-- 247 (724)
.+-..++|.|..|+|||||+..+........ -+.++++-+.+.. .+.++..++...-..+ .+.+....
T Consensus 142 gkGQR~gIfa~~GvGKt~Ll~~i~~~~~~~~-~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~ 220 (463)
T PRK09280 142 AKGGKIGLFGGAGVGKTVLIQELINNIAKEH-GGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLR 220 (463)
T ss_pred ccCCEEEeecCCCCChhHHHHHHHHHHHhcC-CCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 3456899999999999999999988775432 2457777776554 3455666665432111 11211111
Q ss_pred --HHHHHHHHHHh--cCCcEEEEEcccccc
Q 004895 248 --HRAKQLCQRLK--KEKRVLIILDNIWTK 273 (724)
Q Consensus 248 --~~~~~l~~~l~--~~kr~LlVlDdv~~~ 273 (724)
..+-.+.++++ +++++||++|++-..
T Consensus 221 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 221 VALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 11233455552 479999999999543
No 404
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.60 E-value=0.075 Score=60.31 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=51.8
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCC
Q 004895 159 YNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGM 238 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 238 (724)
...++|+++.+..+...+.... -+.++|++|+||||+|+.+.+..... .|..++++.-+ ..+..++++.+..+++.
T Consensus 17 ~~~viG~~~a~~~l~~a~~~~~--~~ll~G~pG~GKT~la~~la~~l~~~-~~~~~~~~~n~-~~~~~~~~~~v~~~~g~ 92 (608)
T TIGR00764 17 IDQVIGQEEAVEIIKKAAKQKR--NVLLIGEPGVGKSMLAKAMAELLPDE-ELEDILVYPNP-EDPNMPRIVEVPAGEGR 92 (608)
T ss_pred HhhccCHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHcCch-hheeEEEEeCC-CCCchHHHHHHHHhhch
Confidence 4567799988887777666543 55599999999999999999877543 33333333222 23455667777777764
No 405
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.59 E-value=0.077 Score=55.76 Aligned_cols=65 Identities=22% Similarity=0.227 Sum_probs=48.3
Q ss_pred ccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHH
Q 004895 162 FNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELA 233 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 233 (724)
++|+++.+..+...+..++ -+.+.|++|+|||+||+.++..... ...+|.+.......++.....
T Consensus 26 ~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~~-----~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 26 VVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALGL-----PFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhCC-----CeEEEecCCCCCHHHhcCchh
Confidence 6688887777766665433 4779999999999999999988752 256777777777777655443
No 406
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.58 E-value=0.067 Score=52.96 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
+..|+|++|.||||++..+....
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 78899999999998888777776
No 407
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.58 E-value=0.031 Score=52.96 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.++.|+|+.|+||||+++.+.....
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988754
No 408
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.57 E-value=0.054 Score=59.86 Aligned_cols=60 Identities=28% Similarity=0.318 Sum_probs=43.2
Q ss_pred CcccccccchHHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKD-----DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI 219 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 219 (724)
|.....++-..+-++++..||.+ ...+++.+.||+|+||||.++.+++... |+.+=|.+-
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg----~~v~Ew~np 79 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG----FEVQEWINP 79 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC----CeeEEecCC
Confidence 33344455556667777777762 3357999999999999999999998863 566667643
No 409
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.57 E-value=0.092 Score=49.03 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.-.+++|+|+.|.|||||++.+.....
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445899999999999999999987653
No 410
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.56 E-value=0.072 Score=47.21 Aligned_cols=28 Identities=29% Similarity=0.239 Sum_probs=24.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
...+|.+.|.-|+|||||++.+++....
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3458999999999999999999998654
No 411
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=94.54 E-value=0.64 Score=47.17 Aligned_cols=38 Identities=16% Similarity=0.308 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 169 FQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 169 ~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
-++|...+..+++ ....++|+.|+||+++|..++...-
T Consensus 6 ~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 6 WEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 3456666665554 4667899999999999999988764
No 412
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.53 E-value=0.031 Score=52.91 Aligned_cols=25 Identities=36% Similarity=0.717 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
+|+|.|.+|+||||||+.+......
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999988763
No 413
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.51 E-value=0.035 Score=52.44 Aligned_cols=25 Identities=20% Similarity=0.379 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999987753
No 414
>PRK14529 adenylate kinase; Provisional
Probab=94.50 E-value=0.094 Score=51.21 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=45.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCe--EEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcC
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDK--VVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKE 260 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 260 (724)
.|.|.|++|+||||+|+.++...... +.+. .+.-.+..........++++.+-. -.+ .+-....+.+.+.+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~-~is~gdllr~~i~~~t~lg~~i~~~i~~G~-lvp----dei~~~lv~~~l~~~ 75 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLA-HIESGAIFREHIGGGTELGKKAKEYIDRGD-LVP----DDITIPMILETLKQD 75 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC-CcccchhhhhhccCCChHHHHHHHHHhccC-cch----HHHHHHHHHHHHhcc
Confidence 37889999999999999999887542 3321 111122222223333444443211 111 222334455555432
Q ss_pred CcEEEEEcccccc
Q 004895 261 KRVLIILDNIWTK 273 (724)
Q Consensus 261 kr~LlVlDdv~~~ 273 (724)
...=+|||..-..
T Consensus 76 ~~~g~iLDGfPRt 88 (223)
T PRK14529 76 GKNGWLLDGFPRN 88 (223)
T ss_pred CCCcEEEeCCCCC
Confidence 2445899998543
No 415
>PRK06217 hypothetical protein; Validated
Probab=94.50 E-value=0.029 Score=53.37 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCC--CeEEE
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVF--DKVVM 216 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F--~~~~w 216 (724)
.|.|.|.+|+||||+|+.+.+.... .+| |..+|
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~-~~~~~D~~~~ 37 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI-PHLDTDDYFW 37 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC-cEEEcCceee
Confidence 5899999999999999999988753 233 34555
No 416
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.50 E-value=0.1 Score=46.20 Aligned_cols=41 Identities=15% Similarity=0.392 Sum_probs=15.4
Q ss_pred ccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcEEEcC
Q 004895 565 QISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQTLCLD 606 (724)
Q Consensus 565 ~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~ 606 (724)
.+....|.+++.|+.+.+.++ +..++. .+..+.+|+++.+.
T Consensus 25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred EeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344444555555555555442 333322 23333344444443
No 417
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.49 E-value=0.028 Score=51.52 Aligned_cols=23 Identities=43% Similarity=0.673 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
++.|+|++|+||||+|+.+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998764
No 418
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.48 E-value=0.043 Score=54.00 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.|.|+|++|+||||+|+.+++...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999988764
No 419
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=94.47 E-value=0.054 Score=56.38 Aligned_cols=48 Identities=21% Similarity=0.307 Sum_probs=38.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 158 DYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
+...++|.++.+..+.-.+.+.+..-+.+.|.+|+||||+|+.+..-.
T Consensus 6 ~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 6 PFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 456678999988887765544455568899999999999999998765
No 420
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=94.44 E-value=0.08 Score=54.60 Aligned_cols=49 Identities=27% Similarity=0.359 Sum_probs=37.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
.+++.+.|.||+||||+|...+-.....+ ..++-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g--~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESG--KKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcC--CcEEEEEeCCCCchHhhhcc
Confidence 46899999999999999999877776543 45777777777676666544
No 421
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.44 E-value=0.12 Score=56.47 Aligned_cols=88 Identities=27% Similarity=0.323 Sum_probs=51.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCc-hhHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSND-LIYHRAKQLCQRLK 258 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~ 258 (724)
.-.++.|.|.+|+|||||+.+++....... ..++|++..+ +..++.. -++.++...+.-. ........+...+.
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~EE--s~~qi~~-ra~rlg~~~~~l~~~~e~~~~~I~~~i~ 167 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGEE--SLQQIKM-RAIRLGLPEPNLYVLSETNWEQICANIE 167 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECcC--CHHHHHH-HHHHcCCChHHeEEcCCCCHHHHHHHHH
Confidence 346899999999999999999988765432 3578887644 3333322 2334443211100 00112344455554
Q ss_pred cCCcEEEEEccccc
Q 004895 259 KEKRVLIILDNIWT 272 (724)
Q Consensus 259 ~~kr~LlVlDdv~~ 272 (724)
+.+.-++|+|.+..
T Consensus 168 ~~~~~~vVIDSIq~ 181 (454)
T TIGR00416 168 EENPQACVIDSIQT 181 (454)
T ss_pred hcCCcEEEEecchh
Confidence 44667899998843
No 422
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=94.41 E-value=0.063 Score=54.35 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=41.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhC
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLG 237 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~ 237 (724)
+.-+++.|+|.+|+|||+++.++....... ...++||+..+. ..++.+.+.+ ++
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~--ge~vlyvs~~e~--~~~l~~~~~~-~g 74 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGARE--GEPVLYVSTEES--PEELLENARS-FG 74 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhc--CCcEEEEEecCC--HHHHHHHHHH-cC
Confidence 356799999999999999999999988654 677999998764 3344444333 44
No 423
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.40 E-value=0.043 Score=53.41 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=27.6
Q ss_pred HhcCCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 175 ALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 175 ~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+.++++++|+++|+.|+|||||..++.+...
T Consensus 16 ~~~~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 16 RLDKHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred HhhhcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34467899999999999999999999998753
No 424
>PRK14530 adenylate kinase; Provisional
Probab=94.39 E-value=0.037 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+.|.|+|++|+||||+|+.++....
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988763
No 425
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.38 E-value=0.21 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.469 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+..|+|++|+|||+||..++-...
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va 26 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMA 26 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHh
Confidence 567899999999999999987654
No 426
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.37 E-value=0.36 Score=50.15 Aligned_cols=29 Identities=38% Similarity=0.520 Sum_probs=25.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
+..+++++|++|+||||++..++......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999988643
No 427
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=94.37 E-value=0.25 Score=45.84 Aligned_cols=120 Identities=16% Similarity=0.122 Sum_probs=64.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeE--EEEEEecCCChHHHHHHHH---HhhCCC--CC--CCchhH----
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKV--VMAEITKNPDAQKIQGELA---SDLGMN--FD--SNDLIY---- 247 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~--~wv~vs~~~~~~~l~~~i~---~~l~~~--~~--~~~~~~---- 247 (724)
...|-|++..|.||||.|.-.+-+.... .+... -|+--.........+..+. .+.+.. +. +.....
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHH
Confidence 4578888899999999999998887653 23321 2333322234333443320 011111 11 111111
Q ss_pred HHHHHHHHHHhcCCcEEEEEcccccccc-----ccccccccCCCCcCCCCCCCCCcEEEEEecccch
Q 004895 248 HRAKQLCQRLKKEKRVLIILDNIWTKLE-----LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL 309 (724)
Q Consensus 248 ~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 309 (724)
.......+.+..+.-=|+|||.+-.... .+++...+.. ...+.-||+|-|+..-
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~--------rp~~~evVlTGR~~p~ 142 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQE--------RPGHQHVIITGRGCPQ 142 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHh--------CCCCCEEEEECCCCCH
Confidence 1223334444445556999999864432 2233333333 4556789999998753
No 428
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.34 E-value=0.11 Score=48.59 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
++.|.|.+|+||||+|..+...... .++++.-....+ .+..+.|...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~-----~~~~iat~~~~~-~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL-----QVLYIATAQPFD-DEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC-----CcEeCcCCCCCh-HHHHHHHHHH
Confidence 6899999999999999999876421 234444433333 3444555443
No 429
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=94.29 E-value=0.07 Score=53.92 Aligned_cols=36 Identities=19% Similarity=0.273 Sum_probs=29.8
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 172 VIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 172 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
..+.+...+..++.|+|.+|+|||||+..+.+....
T Consensus 95 ~r~~~~~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~ 130 (290)
T PRK10463 95 NRARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKD 130 (290)
T ss_pred HHHHHHhcCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 334444677899999999999999999999998754
No 430
>PRK13947 shikimate kinase; Provisional
Probab=94.27 E-value=0.038 Score=51.90 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
-|.|+|++|+||||+|+.+++...
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg 26 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS 26 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998874
No 431
>PRK13949 shikimate kinase; Provisional
Probab=94.26 E-value=0.037 Score=51.81 Aligned_cols=24 Identities=42% Similarity=0.476 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
-|.|+|+.|+||||+++.+++...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998774
No 432
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.24 E-value=0.082 Score=54.45 Aligned_cols=77 Identities=17% Similarity=0.404 Sum_probs=55.0
Q ss_pred ccccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE----ecCC---ChH
Q 004895 160 NIFNSRKKIFQDVIEALK------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI----TKNP---DAQ 226 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v----s~~~---~~~ 226 (724)
..|.|-++.++++++.+. +.+-+|+.++||.|.||||||..+.+-.+. | .+|.-. .+.+ =+.
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~---y--~~Y~l~~~Pm~e~PL~L~P~ 135 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE---Y--PIYTLKGCPMHEEPLHLFPK 135 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe---E--EEEEecCCccccChhhhCCH
Confidence 468899999999999886 456789999999999999999999988864 2 333321 1111 134
Q ss_pred HHHHHHHHhhCCCCC
Q 004895 227 KIQGELASDLGMNFD 241 (724)
Q Consensus 227 ~l~~~i~~~l~~~~~ 241 (724)
++-..+.+.++....
T Consensus 136 ~~r~~~~~~~~~~i~ 150 (358)
T PF08298_consen 136 ELRREFEDELGIRIE 150 (358)
T ss_pred hHHHHHHHHhCcccC
Confidence 555666666766443
No 433
>PRK14527 adenylate kinase; Provisional
Probab=94.23 E-value=0.048 Score=52.34 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=24.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
....+|.|+|++|+||||+|+.+++....
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34578999999999999999999887743
No 434
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.23 E-value=0.03 Score=30.04 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=8.0
Q ss_pred CCcEEEccCCcCcccc
Q 004895 621 KLEILSLRGAEIKQLP 636 (724)
Q Consensus 621 ~L~~L~l~~~~i~~lp 636 (724)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5666777777666665
No 435
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.21 E-value=0.046 Score=51.19 Aligned_cols=27 Identities=37% Similarity=0.612 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
+.|.+.|.+|+||||+|+++++..+.+
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHh
Confidence 467889999999999999999988764
No 436
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.19 E-value=0.093 Score=48.05 Aligned_cols=32 Identities=25% Similarity=0.496 Sum_probs=27.7
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 177 KDDKLNIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 177 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
..++..+|.+.|.+|.||||+|..+++.....
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~ 50 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAK 50 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHc
Confidence 34566799999999999999999999998764
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=94.18 E-value=0.2 Score=58.59 Aligned_cols=193 Identities=17% Similarity=0.208 Sum_probs=89.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC---CchhHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS---NDLIYHRAKQLCQ 255 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 255 (724)
...+++.|+|+.+.||||+.+.+.-..-- .++-.+|++..... -.++..|...++....- .+.-.....++..
T Consensus 325 ~~~~~~iITGpN~gGKTt~lktigl~~~m---aq~G~~vpa~~~~~-i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~ 400 (782)
T PRK00409 325 FDKTVLVITGPNTGGKTVTLKTLGLAALM---AKSGLPIPANEPSE-IPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVR 400 (782)
T ss_pred CCceEEEEECCCCCCcHHHHHHHHHHHHH---HHhCCCcccCCCcc-ccccceEEEecCCccchhhchhHHHHHHHHHHH
Confidence 34578899999999999999999754211 00111222221000 00111111111111000 0001111122222
Q ss_pred HHhc-CCcEEEEEcccccccccc---ccccc-cCCCCcCCCCCCCCCcEEEEEecccchhhhhcCCCc--eEecCCCCHH
Q 004895 256 RLKK-EKRVLIILDNIWTKLELD---KIGIP-YGDVDEKDKNDDPRRCTIILTSRSRDLLCIDMNSQK--MFWIDALSEE 328 (724)
Q Consensus 256 ~l~~-~kr~LlVlDdv~~~~~~~---~l~~~-~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~~~~~~--~~~l~~L~~~ 328 (724)
.+.. ..+-|+++|......+.. .+... +..+ ...|+.+|+||....+......... ...+. ++.
T Consensus 401 Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l-------~~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~- 471 (782)
T PRK00409 401 ILEKADKNSLVLFDELGAGTDPDEGAALAISILEYL-------RKRGAKIIATTHYKELKALMYNREGVENASVE-FDE- 471 (782)
T ss_pred HHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHH-------HHCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-
Confidence 2221 367899999986543321 11110 1000 2347889999998776432111111 11111 111
Q ss_pred HHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHhcCCCHHHHHHHHHHHhc
Q 004895 329 EALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIWKDALNKLTS 389 (724)
Q Consensus 329 e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~~ 389 (724)
+......+...+. + -...|-+|++++ |+|-.+.--|..+.......++.++..+..
T Consensus 472 ~~l~~~Ykl~~G~---~-g~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 472 ETLRPTYRLLIGI---P-GKSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred CcCcEEEEEeeCC---C-CCcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1100000000011 1 134577888887 788888777777766556677777766554
No 438
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=94.18 E-value=0.33 Score=52.18 Aligned_cols=91 Identities=20% Similarity=0.258 Sum_probs=54.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC-hHHHHHHHHHhhCCC--------CCCCchh---
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD-AQKIQGELASDLGMN--------FDSNDLI--- 246 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~l~~~i~~~l~~~--------~~~~~~~--- 246 (724)
.+-..++|+|..|+|||||++.+++... .+.++++-+.+... ..++..+.+..-+.+ .+++...
T Consensus 156 ~~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 156 CRGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 3456899999999999999999987653 24555666665543 334444444332211 1111111
Q ss_pred -HHHHHHHHHHHh-cCCcEEEEEcccccc
Q 004895 247 -YHRAKQLCQRLK-KEKRVLIILDNIWTK 273 (724)
Q Consensus 247 -~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 273 (724)
...+-.+.+++. +++++|+++||+-..
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~ 260 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRF 260 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHH
Confidence 111223444442 478999999999543
No 439
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.17 E-value=0.037 Score=52.52 Aligned_cols=24 Identities=42% Similarity=0.613 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
++|+|+|+.|+||||||+.+++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999998854
No 440
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.17 E-value=0.074 Score=49.59 Aligned_cols=24 Identities=42% Similarity=0.641 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
|.|.|.+|+|||||++.+++..+.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999998854
No 441
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=94.16 E-value=0.14 Score=52.70 Aligned_cols=63 Identities=21% Similarity=0.255 Sum_probs=43.0
Q ss_pred cccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHH
Q 004895 161 IFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQG 230 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 230 (724)
.|+=..+....++.++..+ +-|.|.|++|+||||+|+.++...... .+.|.++...+..++..
T Consensus 46 ~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~-----~~rV~~~~~l~~~DliG 108 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWP-----CVRVNLDSHVSRIDLVG 108 (327)
T ss_pred CccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCC-----eEEEEecCCCChhhcCC
Confidence 3444444556676666533 368999999999999999999988532 34666666665555543
No 442
>PRK13695 putative NTPase; Provisional
Probab=94.15 E-value=0.07 Score=50.28 Aligned_cols=34 Identities=41% Similarity=0.487 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEE
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMA 217 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 217 (724)
.++|+|.+|+|||||++.+++.... ..+....|+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~-~G~~~~g~~ 35 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE-EGYKVGGFY 35 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 4789999999999999999988764 234434344
No 443
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.14 E-value=0.071 Score=46.49 Aligned_cols=24 Identities=42% Similarity=0.551 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
|.|+|.+|+||||+|+.++.....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~ 25 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGL 25 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT-
T ss_pred EeeECCCccHHHHHHHHHHHHcCC
Confidence 679999999999999999988653
No 444
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.12 E-value=0.23 Score=53.44 Aligned_cols=94 Identities=19% Similarity=0.320 Sum_probs=58.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHHHHhhCCC--------CCCCchh---
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGELASDLGMN--------FDSNDLI--- 246 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~~~--------~~~~~~~--- 246 (724)
.+-..++|.|.+|+|||||+..+....... +-+.++++-+.+.. ...+++.++...-..+ .+++...
T Consensus 141 g~GQr~~If~~~G~GKt~L~~~~~~~~~~~-~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~ 219 (461)
T TIGR01039 141 AKGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMR 219 (461)
T ss_pred ccCCEEEeecCCCCChHHHHHHHHHHHHhc-CCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHH
Confidence 345688999999999999999998876542 23467777776653 3456666665432111 1121111
Q ss_pred -HHHHHHHHHHHh--cCCcEEEEEcccccc
Q 004895 247 -YHRAKQLCQRLK--KEKRVLIILDNIWTK 273 (724)
Q Consensus 247 -~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 273 (724)
...+-.+.++++ +++++||++||+-..
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 220 VALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 112234555664 368999999999553
No 445
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=94.12 E-value=0.18 Score=54.60 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=57.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCC--eEEEEEEecCC-ChHHHHHHHHHhhCCC--------CCCCchh--
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFD--KVVMAEITKNP-DAQKIQGELASDLGMN--------FDSNDLI-- 246 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~vs~~~-~~~~l~~~i~~~l~~~--------~~~~~~~-- 246 (724)
+-..++|.|..|+|||||+..+.+.....+.+. .++++-+.+.. ...+++.++...=..+ .+++...
T Consensus 140 ~GQR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R~ 219 (458)
T TIGR01041 140 RGQKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDFEETGALERAVVFLNLADDPAVERI 219 (458)
T ss_pred cCCEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHHHhcCCcceEEEEEECCCCCHHHHH
Confidence 445789999999999999999988765321121 45666666543 4555666655432111 1111111
Q ss_pred --HHHHHHHHHHHh--cCCcEEEEEcccccc
Q 004895 247 --YHRAKQLCQRLK--KEKRVLIILDNIWTK 273 (724)
Q Consensus 247 --~~~~~~l~~~l~--~~kr~LlVlDdv~~~ 273 (724)
...+..+.++++ +++++||++||+-..
T Consensus 220 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~ 250 (458)
T TIGR01041 220 VTPRMALTAAEYLAFEKDMHVLVILTDMTNY 250 (458)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcChhHH
Confidence 112334566666 588999999999543
No 446
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.12 E-value=0.048 Score=50.14 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEE
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVM 216 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~w 216 (724)
|++|+|+.|+|||||+..+....+.+ .+...+.
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~-G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR-GYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEE
Confidence 58899999999999999999988753 4444333
No 447
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.09 E-value=0.04 Score=50.29 Aligned_cols=20 Identities=45% Similarity=0.745 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIA 202 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~ 202 (724)
.|+|.|.+|+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999987
No 448
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=94.07 E-value=0.046 Score=50.26 Aligned_cols=23 Identities=43% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
|.|+|++|+||||+|+.+.....
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 67999999999999999988763
No 449
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.06 E-value=0.078 Score=51.18 Aligned_cols=30 Identities=23% Similarity=0.405 Sum_probs=25.9
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 178 DDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
..+..+|.|+|++|+||||||+.+......
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 356679999999999999999999987753
No 450
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.06 E-value=0.047 Score=47.59 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHHh
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
|.|+|..|+|||||.+.+.....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987654
No 451
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.05 E-value=0.066 Score=50.94 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=27.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEE
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAE 218 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 218 (724)
.+++.|+|+.|+|||||++.+...... .|..+++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~--~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPD--KFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTT--TEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccc--ccccceeec
Confidence 468999999999999999999997753 364444443
No 452
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=94.04 E-value=0.2 Score=53.71 Aligned_cols=93 Identities=20% Similarity=0.222 Sum_probs=58.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc--cCCC---------eEEEEEEecCCChHHHHHHHHHhhC-CC--------
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMED--NVFD---------KVVMAEITKNPDAQKIQGELASDLG-MN-------- 239 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~---------~~~wv~vs~~~~~~~l~~~i~~~l~-~~-------- 239 (724)
+-+.++|.|-+|+|||||+..+.+..... ...| .++++-+.+.....+.+.+.+..-+ ..
T Consensus 140 ~GQRigIfagsGvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGerre~~efi~~~l~~~g~l~rtvvv~at 219 (466)
T TIGR01040 140 RGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVNMETARFFKQDFEENGSMERVCLFLNL 219 (466)
T ss_pred cCCeeeeecCCCCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeeehHHHHHHHHHHHhcCCcceEEEEEEC
Confidence 45678999999999999999998876410 0012 5677777777655555555555544 11
Q ss_pred CCCCchh----HHHHHHHHHHHh--cCCcEEEEEccccc
Q 004895 240 FDSNDLI----YHRAKQLCQRLK--KEKRVLIILDNIWT 272 (724)
Q Consensus 240 ~~~~~~~----~~~~~~l~~~l~--~~kr~LlVlDdv~~ 272 (724)
.+++... ...+-.+.+++. +++++|+++||+-.
T Consensus 220 sd~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr 258 (466)
T TIGR01040 220 ANDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSS 258 (466)
T ss_pred CCCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHH
Confidence 1111111 111233556665 47999999999954
No 453
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.01 E-value=0.13 Score=54.58 Aligned_cols=46 Identities=26% Similarity=0.283 Sum_probs=36.3
Q ss_pred cccchHHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 161 IFNSRKKIFQDVIEALKD--------------DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.++|.++.++.+..++.. .....|.++|++|+|||++|+.+.....
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~ 75 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467888888887766632 0136789999999999999999998864
No 454
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.98 E-value=0.42 Score=48.63 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=37.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
-.++.|.|++|+||||++.+++...... +=..++|++... +..++...+...
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~--~~~~~~~r~~~~ 81 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEE--PVVRTARRLLGQ 81 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEccc--CHHHHHHHHHHH
Confidence 4588899999999999999998876432 123588888765 345566665544
No 455
>PRK00300 gmk guanylate kinase; Provisional
Probab=93.97 E-value=0.053 Score=52.69 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
...+|+|+|+.|+||||||+.++...
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999865
No 456
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.97 E-value=0.35 Score=52.46 Aligned_cols=95 Identities=13% Similarity=0.095 Sum_probs=54.8
Q ss_pred CCccEEEEEcCCCCcHHHHH-HHHHHHHhhc-----cCCCeEEEEEEecCCChHHHHHHHHHhhCC-C--------CCCC
Q 004895 179 DKLNIIGVCGMGGVGKTTLV-KQIAKQVMED-----NVFDKVVMAEITKNPDAQKIQGELASDLGM-N--------FDSN 243 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~-~--------~~~~ 243 (724)
.+-..++|.|..|+|||+|| ..+.+..... +.-+.++++-+.+..+...-+.+.+++-+. . .+++
T Consensus 187 GRGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep 266 (574)
T PTZ00185 187 GRGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEP 266 (574)
T ss_pred cCCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCC
Confidence 34567899999999999997 6667765321 234567888888765433223444444331 1 1111
Q ss_pred chhH----HHHHHHHHHHh-cCCcEEEEEcccccc
Q 004895 244 DLIY----HRAKQLCQRLK-KEKRVLIILDNIWTK 273 (724)
Q Consensus 244 ~~~~----~~~~~l~~~l~-~~kr~LlVlDdv~~~ 273 (724)
.... -..-.+.+++. +++.+|+|+||+-..
T Consensus 267 ~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~ 301 (574)
T PTZ00185 267 AGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQ 301 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHH
Confidence 1010 01222334442 478999999999553
No 457
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=93.95 E-value=0.058 Score=49.46 Aligned_cols=29 Identities=28% Similarity=0.655 Sum_probs=26.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcc
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDN 209 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~ 209 (724)
.+|++|+|+.|+|||||...+....+.++
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G 30 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARG 30 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCC
Confidence 46999999999999999999999998753
No 458
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.94 E-value=0.049 Score=54.05 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=23.3
Q ss_pred EEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEe
Q 004895 186 VCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEIT 220 (724)
Q Consensus 186 I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (724)
|+||+|+||||+++.+.+.....+ ..++-|+..
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNLD 33 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNLD 33 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE--
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEcc
Confidence 689999999999999999887542 335555554
No 459
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.92 E-value=0.042 Score=49.47 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (724)
|+|+|+.|+|||||++.+.+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999998765
No 460
>PRK13975 thymidylate kinase; Provisional
Probab=93.91 E-value=0.052 Score=52.27 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=23.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
..|+|.|+.|+||||+|+.+++....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47999999999999999999998753
No 461
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.91 E-value=0.31 Score=52.20 Aligned_cols=90 Identities=19% Similarity=0.334 Sum_probs=53.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC-hHHHHHHHHHhhCCC--------CCCCchhH---
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD-AQKIQGELASDLGMN--------FDSNDLIY--- 247 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~l~~~i~~~l~~~--------~~~~~~~~--- 247 (724)
.-..++|+|..|+|||||++.++.... .+.++.+-+.+... ..++..+++..-+.. .+++....
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~~----~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGTT----ADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCCC----CCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 456899999999999999999986432 35556666665543 344555554432211 11111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEcccccc
Q 004895 248 -HRAKQLCQRLK-KEKRVLIILDNIWTK 273 (724)
Q Consensus 248 -~~~~~l~~~l~-~~kr~LlVlDdv~~~ 273 (724)
..+-.+.+++. +++++|+++||+-..
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~ 264 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRY 264 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHH
Confidence 11222444442 478999999999543
No 462
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.90 E-value=0.041 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (724)
|.|+|++|+||||+|+.+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998775
No 463
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.89 E-value=0.097 Score=54.06 Aligned_cols=45 Identities=22% Similarity=0.379 Sum_probs=31.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKI 228 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l 228 (724)
+++.+.|-||+||||+|...+-....++ ..+.-++.....++.++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G--~rtLlvS~Dpa~~L~d~ 46 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRG--KRTLLVSTDPAHSLSDV 46 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTT--S-EEEEESSTTTHHHHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCC--CCeeEeecCCCccHHHH
Confidence 6899999999999999999888876543 23555554444444333
No 464
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.89 E-value=0.18 Score=50.58 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=53.8
Q ss_pred CccEEEEEcCCCCcHHHHH-HHHHHHHhhccCCCeE-EEEEEecCC-ChHHHHHHHHHhhCC--------CCCCCchhH-
Q 004895 180 KLNIIGVCGMGGVGKTTLV-KQIAKQVMEDNVFDKV-VMAEITKNP-DAQKIQGELASDLGM--------NFDSNDLIY- 247 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~l~~~i~~~l~~--------~~~~~~~~~- 247 (724)
+-+.++|.|..|+|||+|| ..+.+.. .-+.+ +++-+.+.. ...++.+++...-.. ..++.....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~~----~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQK----GKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHhc----CCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 4457899999999999996 5555543 23444 666666553 345555555543211 111111110
Q ss_pred ---HHHHHHHHHHh-cCCcEEEEEcccccc-cccccc
Q 004895 248 ---HRAKQLCQRLK-KEKRVLIILDNIWTK-LELDKI 279 (724)
Q Consensus 248 ---~~~~~l~~~l~-~~kr~LlVlDdv~~~-~~~~~l 279 (724)
..+-.+.+++. +++++|+++||+-.. ..++++
T Consensus 144 ~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 144 LAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHH
Confidence 01223334443 478999999999654 344444
No 465
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.89 E-value=0.56 Score=48.56 Aligned_cols=49 Identities=20% Similarity=0.233 Sum_probs=36.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGEL 232 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i 232 (724)
+-..++|.|..|+|||+|++++.+... -+.++++-+.+.. ...+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~~----~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYSN----SDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCCC----CCEEEEEEeCCChHHHHHHHHHH
Confidence 445899999999999999999988542 3578888887654 345555554
No 466
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.88 E-value=0.057 Score=51.81 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=22.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..+|.|.|.+|+||||+|+.++...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998875
No 467
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.87 E-value=0.25 Score=52.99 Aligned_cols=90 Identities=22% Similarity=0.381 Sum_probs=50.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec-CCChHHHHHHHHHhhCCC--------CCCCchhH---
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK-NPDAQKIQGELASDLGMN--------FDSNDLIY--- 247 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~i~~~l~~~--------~~~~~~~~--- 247 (724)
+-..++|+|..|+|||||++.+...... +....+.+.+ .....++..+.+..-+.+ .+++....
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~~----~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTDA----DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCCC----CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 4468999999999999999988865432 2323333333 333444555444332211 11111111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEcccccc
Q 004895 248 -HRAKQLCQRLK-KEKRVLIILDNIWTK 273 (724)
Q Consensus 248 -~~~~~l~~~l~-~~kr~LlVlDdv~~~ 273 (724)
..+-.+.+++. +++++|+++||+-..
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~DslTr~ 242 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSVTRF 242 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 11223444443 478999999998543
No 468
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.86 E-value=0.059 Score=50.63 Aligned_cols=26 Identities=35% Similarity=0.400 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...|.|+|+.|+||||+++.+.+...
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 34689999999999999999998753
No 469
>PRK08149 ATP synthase SpaL; Validated
Probab=93.85 E-value=0.3 Score=52.37 Aligned_cols=90 Identities=18% Similarity=0.249 Sum_probs=53.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCCC--------CCCCchh----
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGMN--------FDSNDLI---- 246 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~--------~~~~~~~---- 246 (724)
+-..++|+|..|+|||||+..++.... .+.++...+... .+..++..+........ .+.+...
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 456899999999999999999887442 244444445433 34556666665543211 1111101
Q ss_pred HHHHHHHHHHHh-cCCcEEEEEcccccc
Q 004895 247 YHRAKQLCQRLK-KEKRVLIILDNIWTK 273 (724)
Q Consensus 247 ~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 273 (724)
...+..+.+++. +++++||++||+-..
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~DslTr~ 253 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSMTRY 253 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccchHHH
Confidence 112223344442 478999999999543
No 470
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.84 E-value=0.27 Score=48.92 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
+|+|.|..|+||||+++.+.+....
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999988764
No 471
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.82 E-value=0.05 Score=51.61 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=28.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI 219 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 219 (724)
.-.|++|+|+.|+|||||.+.+..-.... ++.+|+.-
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~---~G~I~i~g 63 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPD---SGSITVDG 63 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCC---CceEEECC
Confidence 44699999999999999999986654432 45777753
No 472
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.80 E-value=0.1 Score=49.72 Aligned_cols=45 Identities=16% Similarity=0.194 Sum_probs=32.0
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 159 YNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
...++|.+..+..+.-.... ..-+.++|++|+|||++|+.+..-.
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 34677888777776655443 3478899999999999999997643
No 473
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.79 E-value=0.16 Score=52.80 Aligned_cols=38 Identities=29% Similarity=0.616 Sum_probs=29.9
Q ss_pred HHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 171 DVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 171 ~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
.+++.+. .++..+|+|.|++|+|||||+..+.......
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~ 83 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIEQ 83 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 4444443 3567799999999999999999999888753
No 474
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=93.79 E-value=0.72 Score=49.28 Aligned_cols=79 Identities=19% Similarity=0.257 Sum_probs=63.2
Q ss_pred ccchHHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-------ChHHHHHH
Q 004895 162 FNSRKKIFQDVIEALK---DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-------DAQKIQGE 231 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-------~~~~l~~~ 231 (724)
-|||+.+++.|.+.|. +++..+-.|.|.=|.|||.+++.+.+....+ .| .+..+.+|... ....+.++
T Consensus 27 ~VGr~~e~~~l~~~l~~v~~G~s~~kfi~G~YGsGKTf~l~~i~~~A~~~-~f-vvs~v~ls~e~~lh~~~g~~~~~Yr~ 104 (416)
T PF10923_consen 27 AVGREREIEALDRDLDRVADGGSSFKFIRGEYGSGKTFFLRLIRERALEK-GF-VVSEVDLSPERPLHGTGGQLEALYRE 104 (416)
T ss_pred eechHHHHHHHHHHHHHHhCCCCeEEEEEeCCCCcHHHHHHHHHHHHHHc-CC-EEEEEecCCCcccccccccHHHHHHH
Confidence 4699999999988776 6777788999999999999999999988764 34 36677777642 45679999
Q ss_pred HHHhhCCCCCC
Q 004895 232 LASDLGMNFDS 242 (724)
Q Consensus 232 i~~~l~~~~~~ 242 (724)
|++.+..+..+
T Consensus 105 l~~nL~t~~~p 115 (416)
T PF10923_consen 105 LMRNLSTKTKP 115 (416)
T ss_pred HHHhcCCCCCC
Confidence 99999876543
No 475
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=93.77 E-value=0.15 Score=54.22 Aligned_cols=41 Identities=32% Similarity=0.476 Sum_probs=33.0
Q ss_pred HHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 167 KIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 167 ~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
...+.+++.+.......+.|.|+||+|||+|.+.+.+..+.
T Consensus 8 ~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 8 RVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 34556666666566778999999999999999999998865
No 476
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=93.73 E-value=0.13 Score=52.38 Aligned_cols=53 Identities=25% Similarity=0.280 Sum_probs=40.2
Q ss_pred cccccchHHHHH---HHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHHHHhhccCC
Q 004895 159 YNIFNSRKKIFQ---DVIEALKDD--KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVF 211 (724)
Q Consensus 159 ~~~~~gR~~~~~---~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F 211 (724)
..+++|..+..+ -+++++.++ .-+.|.|+|++|.|||+||-.+.+.....-+|
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF 95 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPF 95 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCc
Confidence 467888766544 345555544 34789999999999999999999999766555
No 477
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.72 E-value=0.34 Score=50.14 Aligned_cols=89 Identities=25% Similarity=0.369 Sum_probs=51.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec-CCChHHHHHHHHHhhCCC--------CCCCchhH---
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK-NPDAQKIQGELASDLGMN--------FDSNDLIY--- 247 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~i~~~l~~~--------~~~~~~~~--- 247 (724)
.-..++|+|..|+|||||++.+..... .+.....-+.. ..+..++.......-+.. .+++....
T Consensus 68 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~ 143 (326)
T cd01136 68 KGQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKA 143 (326)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHH
Confidence 446889999999999999998887543 23334444443 334555555555432211 11211111
Q ss_pred -HHHHHHHHHHh-cCCcEEEEEccccc
Q 004895 248 -HRAKQLCQRLK-KEKRVLIILDNIWT 272 (724)
Q Consensus 248 -~~~~~l~~~l~-~~kr~LlVlDdv~~ 272 (724)
..+-.+.+++. +++++|+++||+-.
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsltr 170 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSLTR 170 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccchH
Confidence 11222333332 47899999999854
No 478
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.72 E-value=0.57 Score=46.73 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=36.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
-.++.|.|.+|+|||+++.+++.+...... ..++|++... +..++...++.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~~ 63 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLLA 63 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHHH
Confidence 358999999999999999999887654312 3477777654 45566666543
No 479
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.72 E-value=0.052 Score=51.84 Aligned_cols=24 Identities=25% Similarity=0.480 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.++.|+|+.|+|||||++.++...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 478999999999999999997654
No 480
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.69 E-value=2.4 Score=43.20 Aligned_cols=68 Identities=15% Similarity=0.171 Sum_probs=39.4
Q ss_pred CCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEeccc-chhhhhcCCCceEecCCCCHHHHHHHHHH
Q 004895 260 EKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSR-DLLCIDMNSQKMFWIDALSEEEALQLFEK 336 (724)
Q Consensus 260 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~-~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 336 (724)
+++-++|+||++... ..+.+.-.+.. ...++.+|++|.+. .+.+.-.+....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEE--------Pp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEE--------PQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcC--------CCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 566799999997653 34444333322 33445566666554 44433344556788876 66766666653
No 481
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.66 E-value=0.27 Score=53.99 Aligned_cols=124 Identities=19% Similarity=0.279 Sum_probs=64.7
Q ss_pred HHHHHHhcCCCccEEEEEcCCCCcHHH-HHHHHHHHHhhccCCCeEEEEEEecCCCh--HHHHHHHHHhhCCCCCCCc--
Q 004895 170 QDVIEALKDDKLNIIGVCGMGGVGKTT-LVKQIAKQVMEDNVFDKVVMAEITKNPDA--QKIQGELASDLGMNFDSND-- 244 (724)
Q Consensus 170 ~~l~~~L~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~l~~~i~~~l~~~~~~~~-- 244 (724)
++|++.+. ...||.|+|..|+|||| |++.+|.+--.. ++ -|-+.+...+ -.+.+.+.+.++.......
T Consensus 362 ~~ll~~ir--~n~vvvivgETGSGKTTQl~QyL~edGY~~---~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 362 DQLLSVIR--ENQVVVIVGETGSGKTTQLAQYLYEDGYAD---NG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHHh--hCcEEEEEecCCCCchhhhHHHHHhccccc---CC--eeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 34444443 34599999999999976 666666654222 22 3444444433 3345566666643321100
Q ss_pred --------hhH------HHHHHHHHHHhc---CCcEEEEEccccccccccc-----cccccCCCCcCCCCCCCCCcEEEE
Q 004895 245 --------LIY------HRAKQLCQRLKK---EKRVLIILDNIWTKLELDK-----IGIPYGDVDEKDKNDDPRRCTIIL 302 (724)
Q Consensus 245 --------~~~------~~~~~l~~~l~~---~kr~LlVlDdv~~~~~~~~-----l~~~~~~~~~~~~~~~~~~s~ilv 302 (724)
... ....-|++.|.. .|--.||+|...+...--+ +...+. ....-|+||
T Consensus 435 sIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~la---------rRrdlKliV 505 (1042)
T KOG0924|consen 435 SIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLA---------RRRDLKLIV 505 (1042)
T ss_pred EEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHH---------hhccceEEE
Confidence 000 011223333321 3556899999976532111 111111 345678999
Q ss_pred Eecccch
Q 004895 303 TSRSRDL 309 (724)
Q Consensus 303 TtR~~~v 309 (724)
||-.-+.
T Consensus 506 tSATm~a 512 (1042)
T KOG0924|consen 506 TSATMDA 512 (1042)
T ss_pred eeccccH
Confidence 9987653
No 482
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.63 E-value=0.33 Score=48.45 Aligned_cols=98 Identities=21% Similarity=0.245 Sum_probs=55.2
Q ss_pred ccchHHHHHHHHHHhc----C---CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCC-CeE-EEEEEecCCChHHHHHHH
Q 004895 162 FNSRKKIFQDVIEALK----D---DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVF-DKV-VMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~----~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~-~wv~vs~~~~~~~l~~~i 232 (724)
+.|..-..+.++..+. + .+.=|++.+|.+|+||...++.+++......-- +.+ .++..-.-+....+ ..
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~i-e~- 161 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKI-ED- 161 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHH-HH-
Confidence 3454444455555443 2 345699999999999999999999987542110 111 11111111111111 00
Q ss_pred HHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 233 ASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
-..+...+++..+..-+|-|+|+|+++..
T Consensus 162 ------------Yk~eL~~~v~~~v~~C~rslFIFDE~DKm 190 (344)
T KOG2170|consen 162 ------------YKEELKNRVRGTVQACQRSLFIFDEVDKL 190 (344)
T ss_pred ------------HHHHHHHHHHHHHHhcCCceEEechhhhc
Confidence 02234455555555568899999999765
No 483
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.63 E-value=0.11 Score=47.71 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 169 FQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 169 ~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
++.|.+.+.+ +++.++|..|+|||||+..+....
T Consensus 26 ~~~l~~~l~~---k~~vl~G~SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 26 IEELKELLKG---KTSVLLGQSGVGKSSLINALLPEA 59 (161)
T ss_dssp HHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHTSS
T ss_pred HHHHHHHhcC---CEEEEECCCCCCHHHHHHHHHhhc
Confidence 4566666643 689999999999999999887653
No 484
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.60 E-value=0.057 Score=52.20 Aligned_cols=27 Identities=30% Similarity=0.494 Sum_probs=23.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.-.+++|+|..|+|||||++.++--.+
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~ 58 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEK 58 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccC
Confidence 445899999999999999999976554
No 485
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.60 E-value=0.073 Score=48.18 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=32.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGM 238 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~ 238 (724)
..++.|+|.+|+||||+.+.+.... +..+ ..+..++.-+++...|.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l-~~~~-----------ivNyG~~Mle~A~k~gl 49 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL-VKHK-----------IVNYGDLMLEIAKKKGL 49 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH-hhce-----------eeeHhHHHHHHHHHhCC
Confidence 4789999999999999999888776 2111 11344666677666654
No 486
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=93.58 E-value=0.063 Score=45.46 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=19.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIA 202 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~ 202 (724)
-..++|+|+.|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4589999999999999999976
No 487
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.57 E-value=0.19 Score=48.32 Aligned_cols=26 Identities=35% Similarity=0.468 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
..|+|.|..|+||||+++.+.+....
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999998765
No 488
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=93.56 E-value=0.2 Score=48.23 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
+|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998864
No 489
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=93.53 E-value=0.2 Score=48.23 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=26.1
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 178 DDKLNIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
.++-++..|.|++|+||||+++.+.......
T Consensus 15 ~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 15 TSGDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HCTCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred hcCCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 3455788999999999999999998887764
No 490
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.52 E-value=0.065 Score=51.01 Aligned_cols=26 Identities=15% Similarity=0.391 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
+..+|.|+|++|+|||||++.+.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45689999999999999999998754
No 491
>PLN02200 adenylate kinase family protein
Probab=93.45 E-value=0.074 Score=52.65 Aligned_cols=26 Identities=31% Similarity=0.253 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
...+|.|.|++|+||||+|+.+++..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 34588999999999999999998765
No 492
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.43 E-value=1.8 Score=46.17 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=44.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
.++-+.+.|++|.|||.|++.|+-+.... +.++|. ..|..++.++. +..+..++..-+.
T Consensus 185 p~rglLLfGPpgtGKtmL~~aiAsE~~at-------ff~iSa------------ssLtsK~~Ge~--eK~vralf~vAr~ 243 (428)
T KOG0740|consen 185 PVRGLLLFGPPGTGKTMLAKAIATESGAT-------FFNISA------------SSLTSKYVGES--EKLVRALFKVARS 243 (428)
T ss_pred ccchhheecCCCCchHHHHHHHHhhhcce-------EeeccH------------HHhhhhccChH--HHHHHHHHHHHHh
Confidence 45566799999999999999999887653 223321 11112222221 2233444444444
Q ss_pred CCcEEEEEcccccc
Q 004895 260 EKRVLIILDNIWTK 273 (724)
Q Consensus 260 ~kr~LlVlDdv~~~ 273 (724)
.++.++++|+++..
T Consensus 244 ~qPsvifidEidsl 257 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSL 257 (428)
T ss_pred cCCeEEEechhHHH
Confidence 67889999998643
No 493
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=93.42 E-value=0.72 Score=53.37 Aligned_cols=45 Identities=20% Similarity=0.362 Sum_probs=32.8
Q ss_pred ccccchHHHHHHHHHHhc---CCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 160 NIFNSRKKIFQDVIEALK---DDKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..++|....+.++.+... .... -|.|+|..|+||+++|+.+.+.-
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~~~-pvli~Ge~GtGK~~~A~~ih~~s 372 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKSSF-PVLLCGEEGVGKALLAQAIHNES 372 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCcCC-CEEEECCCCcCHHHHHHHHHHhC
Confidence 446677776666665544 3333 36799999999999999998754
No 494
>PRK00698 tmk thymidylate kinase; Validated
Probab=93.41 E-value=0.19 Score=48.67 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.+|+|.|+.|+||||+++.+.+....
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l~~ 29 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELLEQ 29 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 58999999999999999999998764
No 495
>PRK13948 shikimate kinase; Provisional
Probab=93.38 E-value=0.085 Score=49.88 Aligned_cols=28 Identities=18% Similarity=0.455 Sum_probs=24.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...+.|.++|+.|+||||+++.+.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3557899999999999999999998764
No 496
>PRK15453 phosphoribulokinase; Provisional
Probab=93.38 E-value=0.09 Score=52.65 Aligned_cols=28 Identities=36% Similarity=0.463 Sum_probs=24.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+..+|+|.|.+|+||||+|+.+.+.+.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~ 30 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFR 30 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3567999999999999999999997664
No 497
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=93.37 E-value=0.085 Score=43.79 Aligned_cols=25 Identities=48% Similarity=0.728 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
++.+.|.+|+||||++..++.....
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4788999999999999999999865
No 498
>PRK13946 shikimate kinase; Provisional
Probab=93.37 E-value=0.071 Score=50.79 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=23.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+.|.++|+.|+||||+++.+.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999999874
No 499
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.36 E-value=0.38 Score=53.43 Aligned_cols=87 Identities=16% Similarity=0.151 Sum_probs=52.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC------------------
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD------------------ 241 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~------------------ 241 (724)
.-+++.|.|++|+||||||.++...-..+ .=..++||+..+ +.+++.+.+ +.++....
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE--~~~~l~~~~-~~~G~~~~~~~~~g~l~~~~~~~~~~ 95 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEE--SPQDIIKNA-RSFGWDLQKLVDEGKLFILDASPDPE 95 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEec--CHHHHHHHH-HHcCCCHHHHhhcCceEEEecCchhc
Confidence 45799999999999999999997653221 014588888864 334444332 33332110
Q ss_pred -----CCchhHHHHHHHHHHHhcCCcEEEEEccc
Q 004895 242 -----SNDLIYHRAKQLCQRLKKEKRVLIILDNI 270 (724)
Q Consensus 242 -----~~~~~~~~~~~l~~~l~~~kr~LlVlDdv 270 (724)
...........+...+..+++-.+|+|-+
T Consensus 96 ~~~~~~~~~l~~~l~~i~~~ls~g~~qRVvIDSl 129 (484)
T TIGR02655 96 GQDVVGGFDLSALIERINYAIRKYKAKRVSIDSV 129 (484)
T ss_pred cccccccCCHHHHHHHHHHHHHHhCCcEEEEeeh
Confidence 00112334556666666666778999954
No 500
>PRK05922 type III secretion system ATPase; Validated
Probab=93.29 E-value=0.42 Score=51.40 Aligned_cols=91 Identities=23% Similarity=0.254 Sum_probs=50.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCCC--------CCCCchh---
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGMN--------FDSNDLI--- 246 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~--------~~~~~~~--- 246 (724)
.+-..++|+|..|+|||||++.+..... .+...++.+.+. ....+.+.+........ .++....
T Consensus 155 ~~GqrigI~G~nG~GKSTLL~~Ia~~~~----~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~ 230 (434)
T PRK05922 155 GKGQRIGVFSEPGSGKSSLLSTIAKGSK----STINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVI 230 (434)
T ss_pred cCCcEEEEECCCCCChHHHHHHHhccCC----CCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHH
Confidence 3445799999999999999999987542 233344434332 23334444443332221 1111101
Q ss_pred -HHHHHHHHHHHh-cCCcEEEEEcccccc
Q 004895 247 -YHRAKQLCQRLK-KEKRVLIILDNIWTK 273 (724)
Q Consensus 247 -~~~~~~l~~~l~-~~kr~LlVlDdv~~~ 273 (724)
...+-.+.++++ +++++|+++||+-..
T Consensus 231 a~~~a~tiAEyfrd~G~~VLl~~DslTR~ 259 (434)
T PRK05922 231 AGRAAMTIAEYFRDQGHRVLFIMDSLSRW 259 (434)
T ss_pred HHHHHHHHHHHHHHcCCCEEEeccchhHH
Confidence 111233444542 479999999999543
Done!