Query 004895
Match_columns 724
No_of_seqs 462 out of 3613
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 09:05:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.2E-48 2.8E-52 431.9 16.7 310 163-507 131-472 (549)
2 1vt4_I APAF-1 related killer D 100.0 2.2E-38 7.4E-43 358.5 20.5 284 162-500 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 3.7E-38 1.2E-42 390.8 23.4 315 156-506 120-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.4E-35 2.2E-39 332.2 26.2 310 156-504 120-450 (591)
5 1p9a_G Platelet glycoprotein I 99.7 4.3E-16 1.5E-20 159.8 16.8 105 573-678 75-182 (290)
6 4fcg_A Uncharacterized protein 99.7 2.9E-16 1E-20 164.1 15.8 182 526-719 103-297 (328)
7 1ozn_A Reticulon 4 receptor; N 99.7 5E-16 1.7E-20 159.2 16.4 150 526-678 31-187 (285)
8 2qen_A Walker-type ATPase; unk 99.7 2.5E-15 8.4E-20 158.8 22.3 292 156-500 8-349 (350)
9 2o6q_A Variable lymphocyte rec 99.7 8.8E-16 3E-20 155.9 17.8 178 526-714 36-219 (270)
10 2o6q_A Variable lymphocyte rec 99.7 1E-15 3.5E-20 155.5 18.0 182 527-720 16-201 (270)
11 1h6t_A Internalin B; cell adhe 99.7 1.1E-15 3.9E-20 156.8 18.2 173 526-717 45-217 (291)
12 1h6u_A Internalin H; cell adhe 99.7 1.6E-15 5.4E-20 157.1 19.2 175 526-719 62-236 (308)
13 3m19_A Variable lymphocyte rec 99.7 1.4E-15 4.8E-20 152.6 17.3 177 527-715 14-194 (251)
14 4fcg_A Uncharacterized protein 99.7 6.4E-16 2.2E-20 161.5 14.8 183 526-718 126-319 (328)
15 2fna_A Conserved hypothetical 99.6 6.5E-15 2.2E-19 156.0 21.5 293 157-499 10-356 (357)
16 1h6u_A Internalin H; cell adhe 99.6 3.6E-15 1.2E-19 154.4 18.5 173 526-717 40-212 (308)
17 3rfs_A Internalin B, repeat mo 99.6 4.1E-15 1.4E-19 151.1 18.2 176 526-714 40-219 (272)
18 3zyi_A Leucine-rich repeat-con 99.6 3.4E-15 1.2E-19 163.6 17.0 183 526-720 74-286 (452)
19 1m9s_A Internalin B; cell inva 99.6 4.2E-15 1.4E-19 167.4 17.8 173 526-717 42-214 (605)
20 1ozn_A Reticulon 4 receptor; N 99.6 5.8E-15 2E-19 151.2 17.0 179 526-714 55-239 (285)
21 3zyj_A Leucine-rich repeat-con 99.6 3.6E-15 1.2E-19 162.8 16.3 183 526-720 63-275 (440)
22 1w5s_A Origin recognition comp 99.6 3E-14 1E-18 154.2 23.3 298 160-482 22-370 (412)
23 1p9a_G Platelet glycoprotein I 99.6 8.5E-15 2.9E-19 150.1 15.6 182 526-720 9-192 (290)
24 3rfs_A Internalin B, repeat mo 99.6 4.3E-15 1.5E-19 151.0 13.1 170 526-713 62-235 (272)
25 1ogq_A PGIP-2, polygalacturona 99.6 4.4E-15 1.5E-19 154.2 13.0 183 527-719 50-264 (313)
26 2xwt_C Thyrotropin receptor; s 99.6 3.4E-15 1.2E-19 148.6 11.7 182 526-719 30-224 (239)
27 2z62_A TOLL-like receptor 4, v 99.6 8.1E-15 2.8E-19 149.3 14.4 151 526-679 27-188 (276)
28 1ogq_A PGIP-2, polygalacturona 99.6 9.1E-15 3.1E-19 151.8 13.7 179 526-717 100-286 (313)
29 2z66_A Variable lymphocyte rec 99.6 7E-15 2.4E-19 152.3 12.5 182 526-716 27-239 (306)
30 3zyi_A Leucine-rich repeat-con 99.6 2.5E-14 8.4E-19 156.8 17.0 150 528-680 55-208 (452)
31 3zyj_A Leucine-rich repeat-con 99.6 2.2E-14 7.6E-19 156.5 16.6 149 529-680 45-197 (440)
32 2z80_A TOLL-like receptor 2, v 99.6 7.5E-15 2.6E-19 155.4 12.1 190 528-720 77-297 (353)
33 2z62_A TOLL-like receptor 4, v 99.6 3E-14 1E-18 145.1 15.9 173 532-713 12-190 (276)
34 1xeu_A Internalin C; cellular 99.6 9.4E-15 3.2E-19 147.5 11.8 168 529-716 21-188 (263)
35 2z66_A Variable lymphocyte rec 99.6 9.2E-15 3.1E-19 151.4 11.8 178 526-714 77-262 (306)
36 1xku_A Decorin; proteoglycan, 99.6 4E-14 1.4E-18 148.2 16.8 64 527-592 52-117 (330)
37 2z80_A TOLL-like receptor 2, v 99.6 8.7E-15 3E-19 154.8 11.8 180 526-716 51-238 (353)
38 3oja_B Anopheles plasmodium-re 99.6 2.9E-14 1E-18 161.8 16.6 105 527-633 75-184 (597)
39 1xku_A Decorin; proteoglycan, 99.6 6.1E-14 2.1E-18 146.8 17.5 177 527-718 100-281 (330)
40 2o6s_A Variable lymphocyte rec 99.6 2E-14 7E-19 139.7 12.8 164 531-713 11-178 (208)
41 3o6n_A APL1; leucine-rich repe 99.6 4.8E-14 1.6E-18 151.4 16.7 39 639-678 244-282 (390)
42 4ezg_A Putative uncharacterize 99.5 2.7E-14 9.3E-19 137.5 13.1 130 571-713 62-194 (197)
43 2id5_A Lingo-1, leucine rich r 99.5 2.7E-14 9.3E-19 157.6 14.9 151 526-679 31-187 (477)
44 3e6j_A Variable lymphocyte rec 99.5 5.4E-14 1.9E-18 138.8 15.4 146 530-679 22-170 (229)
45 4fmz_A Internalin; leucine ric 99.5 8.9E-14 3E-18 146.7 17.6 171 526-713 176-346 (347)
46 3m19_A Variable lymphocyte rec 99.5 6.5E-14 2.2E-18 140.4 15.7 151 526-679 34-190 (251)
47 3vq2_A TLR4, TOLL-like recepto 99.5 3.3E-14 1.1E-18 162.0 15.1 175 526-712 31-216 (606)
48 1h6t_A Internalin B; cell adhe 99.5 7.1E-14 2.4E-18 143.3 15.9 168 532-718 29-196 (291)
49 2ft3_A Biglycan; proteoglycan, 99.5 8E-14 2.7E-18 146.1 15.2 180 526-719 53-283 (332)
50 4fmz_A Internalin; leucine ric 99.5 2.8E-13 9.5E-18 142.9 19.5 172 527-717 66-238 (347)
51 2ft3_A Biglycan; proteoglycan, 99.5 8.3E-14 2.8E-18 145.9 14.9 129 576-713 173-307 (332)
52 2v9t_B SLIT homolog 2 protein 99.5 8.5E-14 2.9E-18 136.4 13.7 146 530-679 14-163 (220)
53 4ezg_A Putative uncharacterize 99.5 1.1E-13 3.8E-18 133.2 13.8 146 526-679 43-192 (197)
54 3rgz_A Protein brassinosteroid 99.5 1.6E-13 5.6E-18 160.3 17.9 177 526-713 465-717 (768)
55 3vq2_A TLR4, TOLL-like recepto 99.5 8.4E-14 2.9E-18 158.7 14.9 150 526-679 55-215 (606)
56 2ell_A Acidic leucine-rich nuc 99.5 9.6E-14 3.3E-18 129.9 12.5 140 573-718 22-165 (168)
57 2id5_A Lingo-1, leucine rich r 99.5 1.6E-13 5.4E-18 151.5 16.1 176 530-717 14-193 (477)
58 3o6n_A APL1; leucine-rich repe 99.5 1.3E-13 4.5E-18 147.9 15.0 148 526-679 44-197 (390)
59 1wwl_A Monocyte differentiatio 99.5 1.9E-14 6.6E-19 149.3 8.2 177 526-717 94-291 (312)
60 3t6q_A CD180 antigen; protein- 99.5 1.6E-13 5.3E-18 156.4 16.4 151 526-679 32-190 (606)
61 2v70_A SLIT-2, SLIT homolog 2 99.5 1.3E-13 4.5E-18 135.1 13.6 146 530-679 14-164 (220)
62 4eco_A Uncharacterized protein 99.5 3.1E-14 1.1E-18 162.6 10.2 152 566-719 198-396 (636)
63 3rgz_A Protein brassinosteroid 99.5 2.4E-13 8.1E-18 159.0 17.7 181 527-718 442-699 (768)
64 2z63_A TOLL-like receptor 4, v 99.5 1.1E-13 3.6E-18 156.6 14.1 151 526-679 27-188 (570)
65 1m9s_A Internalin B; cell inva 99.5 1.6E-13 5.5E-18 154.4 15.2 172 529-719 23-194 (605)
66 2xwt_C Thyrotropin receptor; s 99.5 1.1E-13 3.9E-18 137.5 12.4 173 526-711 54-237 (239)
67 1ziw_A TOLL-like receptor 3; i 99.5 2.1E-13 7.1E-18 157.6 16.2 151 526-679 24-182 (680)
68 1o6v_A Internalin A; bacterial 99.5 3.4E-13 1.2E-17 148.3 17.0 173 527-717 46-238 (466)
69 1o6v_A Internalin A; bacterial 99.5 5.6E-13 1.9E-17 146.5 18.4 175 526-719 220-394 (466)
70 3v47_A TOLL-like receptor 5B a 99.5 1.5E-13 5.2E-18 150.6 13.8 186 526-713 29-225 (455)
71 4g8a_A TOLL-like receptor 4; l 99.5 2.6E-13 8.9E-18 155.3 16.3 174 536-718 40-219 (635)
72 3oja_B Anopheles plasmodium-re 99.5 2.1E-13 7.2E-18 154.7 15.1 147 526-678 50-202 (597)
73 2z81_A CD282 antigen, TOLL-lik 99.5 8.8E-14 3E-18 156.5 11.4 179 526-715 25-211 (549)
74 2xot_A Amphoterin-induced prot 99.5 1.8E-13 6.2E-18 145.0 12.9 172 530-713 21-202 (361)
75 2v9t_B SLIT homolog 2 protein 99.5 2.5E-13 8.7E-18 133.0 12.9 143 560-714 20-166 (220)
76 3oja_A Leucine-rich immune mol 99.5 1.7E-13 5.7E-18 151.2 12.9 175 528-718 35-232 (487)
77 3bz5_A Internalin-J, INLJ; leu 99.5 6.7E-13 2.3E-17 145.0 17.6 172 526-716 41-228 (457)
78 4eco_A Uncharacterized protein 99.5 4.3E-13 1.5E-17 153.1 16.7 184 529-719 379-585 (636)
79 3v47_A TOLL-like receptor 5B a 99.5 4.5E-13 1.5E-17 146.9 16.2 31 526-556 128-161 (455)
80 2z81_A CD282 antigen, TOLL-lik 99.5 1.6E-13 5.5E-18 154.3 12.8 149 527-678 50-206 (549)
81 1xeu_A Internalin C; cellular 99.5 2.6E-13 8.8E-18 136.9 12.7 144 526-679 40-183 (263)
82 4ecn_A Leucine-rich repeat pro 99.4 3.6E-13 1.2E-17 157.0 14.7 133 577-719 621-772 (876)
83 4ecn_A Leucine-rich repeat pro 99.4 6.9E-13 2.3E-17 154.6 16.9 185 527-718 618-824 (876)
84 1wwl_A Monocyte differentiatio 99.4 2.4E-13 8.3E-18 141.0 11.7 173 526-714 120-310 (312)
85 1ziw_A TOLL-like receptor 3; i 99.4 6.3E-13 2.1E-17 153.6 15.6 179 530-718 7-189 (680)
86 2v70_A SLIT-2, SLIT homolog 2 99.4 6.5E-13 2.2E-17 130.1 13.1 148 552-713 14-166 (220)
87 2z63_A TOLL-like receptor 4, v 99.4 1.1E-12 3.7E-17 148.3 16.3 182 530-720 10-197 (570)
88 2xot_A Amphoterin-induced prot 99.4 5E-13 1.7E-17 141.6 12.0 151 526-679 38-200 (361)
89 3t6q_A CD180 antigen; protein- 99.4 7.1E-13 2.4E-17 150.9 14.1 22 695-716 495-516 (606)
90 3e6j_A Variable lymphocyte rec 99.4 1.3E-12 4.5E-17 128.8 14.1 148 552-714 22-173 (229)
91 2v1u_A Cell division control p 99.4 2.3E-11 7.8E-16 130.1 24.5 297 160-482 19-350 (387)
92 2z7x_B TOLL-like receptor 1, v 99.4 7E-13 2.4E-17 148.0 13.0 143 530-680 3-150 (520)
93 3o53_A Protein LRIM1, AGAP0063 99.4 6.1E-13 2.1E-17 138.3 11.5 175 527-719 34-233 (317)
94 4glp_A Monocyte differentiatio 99.4 6.5E-13 2.2E-17 137.6 11.6 179 527-717 91-289 (310)
95 4glp_A Monocyte differentiatio 99.4 2.1E-13 7.1E-18 141.4 7.6 187 527-720 64-271 (310)
96 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 2.3E-12 7.8E-17 145.3 16.8 103 526-632 51-158 (562)
97 2je0_A Acidic leucine-rich nuc 99.4 6.6E-13 2.3E-17 121.4 10.1 129 574-708 16-148 (149)
98 3j0a_A TOLL-like receptor 5; m 99.4 9.3E-13 3.2E-17 155.6 13.9 181 526-713 23-217 (844)
99 3bz5_A Internalin-J, INLJ; leu 99.4 3.4E-12 1.2E-16 139.4 17.2 166 527-717 64-250 (457)
100 2qby_A CDC6 homolog 1, cell di 99.4 3.2E-11 1.1E-15 128.9 24.5 295 159-482 19-347 (386)
101 3j0a_A TOLL-like receptor 5; m 99.4 7.8E-13 2.7E-17 156.3 12.9 173 531-714 8-188 (844)
102 2ast_B S-phase kinase-associat 99.4 2.9E-13 1E-17 142.0 8.2 176 526-710 92-282 (336)
103 2qby_B CDC6 homolog 3, cell di 99.4 1.8E-11 6.2E-16 130.8 22.3 244 160-426 20-295 (384)
104 2o6s_A Variable lymphocyte rec 99.4 9.3E-13 3.2E-17 127.8 11.0 156 526-696 27-188 (208)
105 3cvr_A Invasion plasmid antige 99.4 2.5E-12 8.4E-17 143.2 15.9 157 527-713 80-243 (571)
106 1a9n_A U2A', U2A'; complex (nu 99.4 9.8E-13 3.4E-17 124.0 10.8 135 571-712 15-152 (176)
107 3o53_A Protein LRIM1, AGAP0063 99.4 2.7E-13 9.3E-18 141.0 7.5 168 526-713 79-250 (317)
108 4b8c_D Glucose-repressible alc 99.4 7.8E-13 2.7E-17 152.7 10.7 153 526-680 172-328 (727)
109 2ast_B S-phase kinase-associat 99.4 7.3E-13 2.5E-17 138.9 9.6 176 527-711 70-258 (336)
110 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 1.5E-12 5.1E-17 146.8 12.4 145 528-680 32-181 (562)
111 3cvr_A Invasion plasmid antige 99.4 3.1E-12 1.1E-16 142.3 14.5 166 527-719 59-226 (571)
112 3g06_A SSPH2 (leucine-rich rep 99.4 5.1E-12 1.7E-16 142.4 15.5 99 526-637 60-158 (622)
113 2je0_A Acidic leucine-rich nuc 99.3 2.2E-12 7.6E-17 117.8 9.4 104 571-676 38-148 (149)
114 4g8a_A TOLL-like receptor 4; l 99.3 3.5E-12 1.2E-16 145.9 13.3 151 526-679 51-212 (635)
115 3oja_A Leucine-rich immune mol 99.3 3.1E-12 1E-16 141.0 12.0 168 526-713 79-250 (487)
116 2z7x_B TOLL-like receptor 1, v 99.3 7.2E-12 2.5E-16 139.8 15.2 174 527-714 302-482 (520)
117 1fnn_A CDC6P, cell division co 99.3 1.5E-10 5E-15 124.0 24.6 319 160-505 17-386 (389)
118 1w8a_A SLIT protein; signaling 99.3 5E-12 1.7E-16 120.9 11.3 122 552-679 11-137 (192)
119 1a9n_A U2A', U2A'; complex (nu 99.3 1.6E-12 5.4E-17 122.5 7.6 127 547-678 17-150 (176)
120 2wfh_A SLIT homolog 2 protein 99.3 9.5E-12 3.3E-16 118.9 12.8 122 552-679 13-137 (193)
121 2ell_A Acidic leucine-rich nuc 99.3 6E-12 2E-16 117.6 11.1 106 571-678 45-157 (168)
122 3g06_A SSPH2 (leucine-rich rep 99.3 2.5E-11 8.6E-16 136.8 18.0 29 526-556 80-108 (622)
123 2chg_A Replication factor C sm 99.3 5.4E-11 1.8E-15 116.5 17.7 189 157-370 14-205 (226)
124 1njg_A DNA polymerase III subu 99.3 5.5E-11 1.9E-15 118.2 18.0 200 156-372 19-231 (250)
125 2wfh_A SLIT homolog 2 protein 99.3 1E-11 3.5E-16 118.7 11.9 121 530-654 13-137 (193)
126 1jl5_A Outer protein YOPM; leu 99.3 3.2E-11 1.1E-15 131.5 16.7 138 527-679 111-248 (454)
127 1dce_A Protein (RAB geranylger 99.3 9.4E-12 3.2E-16 139.2 12.4 99 577-678 443-543 (567)
128 1jl5_A Outer protein YOPM; leu 99.3 2.7E-11 9.1E-16 132.2 15.7 165 526-717 90-254 (454)
129 1w8a_A SLIT protein; signaling 99.3 1.1E-11 3.7E-16 118.5 10.4 122 530-654 11-137 (192)
130 4ay9_X Follicle-stimulating ho 99.3 5.9E-12 2E-16 132.7 8.5 154 526-680 29-214 (350)
131 4b8c_D Glucose-repressible alc 99.3 6.2E-12 2.1E-16 145.2 9.1 114 547-664 222-336 (727)
132 2ca6_A RAN GTPase-activating p 99.2 5.2E-12 1.8E-16 135.1 7.5 184 526-716 93-319 (386)
133 2ca6_A RAN GTPase-activating p 99.2 4E-12 1.4E-16 136.0 6.4 180 526-714 59-288 (386)
134 4ay9_X Follicle-stimulating ho 99.2 2.5E-11 8.6E-16 127.9 11.6 187 531-720 13-222 (350)
135 1dce_A Protein (RAB geranylger 99.2 3.4E-11 1.2E-15 134.7 12.4 104 571-675 459-567 (567)
136 3qfl_A MLA10; coiled-coil, (CC 99.2 2E-11 6.8E-16 104.6 8.0 75 15-97 5-80 (115)
137 1ds9_A Outer arm dynein; leuci 99.2 7.3E-13 2.5E-17 127.5 -1.1 137 570-712 43-184 (198)
138 3goz_A Leucine-rich repeat-con 99.2 2.7E-11 9.1E-16 128.4 10.2 132 575-713 109-266 (362)
139 2o6r_A Variable lymphocyte rec 99.2 1E-10 3.6E-15 110.1 12.8 122 552-679 10-135 (177)
140 2o6r_A Variable lymphocyte rec 99.2 2.1E-10 7.2E-15 108.0 12.6 122 530-654 10-135 (177)
141 2r9u_A Variable lymphocyte rec 99.1 1.7E-10 5.7E-15 108.2 10.7 99 578-679 15-116 (174)
142 3g39_A Variable lymphocyte rec 99.1 1.5E-10 5.3E-15 108.0 10.3 100 577-679 11-113 (170)
143 1sxj_B Activator 1 37 kDa subu 99.1 5.3E-10 1.8E-14 116.3 14.5 192 156-371 17-212 (323)
144 3goz_A Leucine-rich repeat-con 99.1 3.1E-11 1.1E-15 127.8 5.1 180 527-714 80-298 (362)
145 1ds9_A Outer arm dynein; leuci 99.1 3.2E-12 1.1E-16 122.9 -2.8 132 538-674 36-180 (198)
146 1z7x_W Ribonuclease inhibitor; 99.0 9.6E-11 3.3E-15 128.4 5.5 180 527-714 56-270 (461)
147 1z7x_W Ribonuclease inhibitor; 99.0 1.1E-10 3.7E-15 128.0 5.3 137 571-713 223-383 (461)
148 2r9u_A Variable lymphocyte rec 99.0 2.7E-09 9.2E-14 99.9 10.8 79 575-653 33-115 (174)
149 1iqp_A RFCS; clamp loader, ext 98.9 2.9E-09 1E-13 110.8 11.2 189 157-372 22-215 (327)
150 3g39_A Variable lymphocyte rec 98.9 6.8E-09 2.3E-13 96.8 10.6 79 575-653 30-112 (170)
151 3sb4_A Hypothetical leucine ri 98.8 7.4E-09 2.5E-13 107.9 10.6 162 548-723 100-320 (329)
152 2chq_A Replication factor C sm 98.8 3.9E-08 1.3E-12 101.8 15.4 187 156-369 13-204 (319)
153 3te6_A Regulatory protein SIR3 98.8 1.1E-07 3.7E-12 96.8 16.7 174 161-339 21-212 (318)
154 2ifg_A High affinity nerve gro 98.8 1.5E-08 5.2E-13 106.4 10.3 88 563-652 21-112 (347)
155 3un9_A NLR family member X1; l 98.8 2.4E-09 8.1E-14 113.2 3.9 180 526-712 71-282 (372)
156 1jr3_A DNA polymerase III subu 98.8 1.3E-07 4.4E-12 100.3 16.8 195 158-369 14-221 (373)
157 1jbk_A CLPB protein; beta barr 98.6 1.4E-07 4.7E-12 89.5 11.4 153 159-334 21-194 (195)
158 3ogk_B Coronatine-insensitive 98.6 4.3E-08 1.5E-12 110.9 8.6 150 526-676 163-326 (592)
159 2p1m_B Transport inhibitor res 98.6 2.1E-08 7.3E-13 113.5 5.5 125 527-651 105-243 (594)
160 3un9_A NLR family member X1; l 98.6 1.3E-08 4.6E-13 107.4 3.0 103 575-678 101-221 (372)
161 1sxj_D Activator 1 41 kDa subu 98.6 2.1E-07 7.2E-12 97.8 12.3 197 156-368 33-234 (353)
162 2ra8_A Uncharacterized protein 98.6 9.8E-08 3.3E-12 100.0 8.9 180 526-713 106-320 (362)
163 2ifg_A High affinity nerve gro 98.6 1.2E-07 4E-12 99.6 9.0 101 531-633 12-116 (347)
164 3ogk_B Coronatine-insensitive 98.5 9.6E-08 3.3E-12 108.1 8.5 55 574-628 269-326 (592)
165 3h4m_A Proteasome-activating n 98.5 1.8E-06 6.3E-11 87.6 17.3 184 158-367 15-229 (285)
166 1hqc_A RUVB; extended AAA-ATPa 98.5 3E-06 1E-10 87.7 18.6 184 158-372 10-214 (324)
167 3pvs_A Replication-associated 98.5 2.4E-06 8.2E-11 92.0 18.1 179 156-369 22-215 (447)
168 3bos_A Putative DNA replicatio 98.5 4E-07 1.4E-11 89.8 10.9 176 159-369 27-217 (242)
169 1d2n_A N-ethylmaleimide-sensit 98.5 4.8E-06 1.6E-10 83.8 18.6 199 161-390 34-264 (272)
170 3sb4_A Hypothetical leucine ri 98.5 4E-07 1.4E-11 94.7 10.2 167 526-706 100-327 (329)
171 1sxj_A Activator 1 95 kDa subu 98.4 1.3E-06 4.4E-11 96.4 13.9 194 156-369 35-253 (516)
172 3d8b_A Fidgetin-like protein 1 98.4 1.1E-05 3.6E-10 84.7 19.6 187 158-370 82-296 (357)
173 2qz4_A Paraplegin; AAA+, SPG7, 98.4 9.5E-06 3.3E-10 81.0 18.5 178 159-363 5-215 (262)
174 1sxj_E Activator 1 40 kDa subu 98.4 1.7E-06 6E-11 90.8 13.2 200 156-370 10-238 (354)
175 2p1m_B Transport inhibitor res 98.4 1.8E-07 6.2E-12 105.8 5.9 129 547-677 103-244 (594)
176 1xwi_A SKD1 protein; VPS4B, AA 98.4 2.1E-05 7E-10 81.1 20.9 188 157-370 9-224 (322)
177 3eie_A Vacuolar protein sortin 98.4 1.1E-05 3.9E-10 83.2 18.3 187 156-369 14-228 (322)
178 1sxj_C Activator 1 40 kDa subu 98.3 4.6E-06 1.6E-10 87.0 14.6 182 156-365 21-208 (340)
179 4fdw_A Leucine rich hypothetic 98.3 3.4E-06 1.2E-10 89.8 13.7 178 526-721 179-366 (401)
180 3pfi_A Holliday junction ATP-d 98.3 5.4E-06 1.8E-10 86.4 14.8 184 156-369 25-227 (338)
181 3uk6_A RUVB-like 2; hexameric 98.3 9.1E-06 3.1E-10 85.7 16.4 196 159-367 43-301 (368)
182 3syl_A Protein CBBX; photosynt 98.3 2.4E-06 8.2E-11 87.8 11.3 154 161-339 32-218 (309)
183 3u61_B DNA polymerase accessor 98.3 3.3E-06 1.1E-10 87.5 12.3 178 156-366 22-213 (324)
184 3vfd_A Spastin; ATPase, microt 98.3 3.7E-05 1.3E-09 81.6 20.4 187 156-368 111-325 (389)
185 2z4s_A Chromosomal replication 98.3 6.2E-06 2.1E-10 88.9 14.3 185 159-367 104-304 (440)
186 3b9p_A CG5977-PA, isoform A; A 98.3 5.3E-05 1.8E-09 77.2 20.1 187 157-368 18-232 (297)
187 2qp9_X Vacuolar protein sortin 98.2 2.9E-05 1E-09 81.2 18.1 185 158-369 49-261 (355)
188 3e4g_A ATP synthase subunit S, 98.2 8.8E-07 3E-11 81.5 5.5 82 576-657 62-153 (176)
189 4b4t_J 26S protease regulatory 98.2 1.6E-05 5.6E-10 82.8 15.5 180 157-362 145-354 (405)
190 1a5t_A Delta prime, HOLB; zinc 98.2 2.8E-05 9.6E-10 80.6 17.1 171 165-368 7-204 (334)
191 2zan_A Vacuolar protein sortin 98.2 4.4E-05 1.5E-09 82.3 19.1 187 157-369 131-345 (444)
192 4fdw_A Leucine rich hypothetic 98.2 8.9E-06 3E-10 86.6 13.4 143 528-678 136-281 (401)
193 2p65_A Hypothetical protein PF 98.2 5.1E-06 1.7E-10 78.1 9.3 50 158-207 20-69 (187)
194 3pxg_A Negative regulator of g 98.2 1.4E-05 4.7E-10 86.9 13.8 152 157-339 177-339 (468)
195 3cf0_A Transitional endoplasmi 98.2 6.9E-05 2.4E-09 76.4 18.1 178 158-364 13-223 (301)
196 4b4t_M 26S protease regulatory 98.1 4.1E-05 1.4E-09 81.1 15.8 181 156-362 177-387 (434)
197 4b4t_L 26S protease subunit RP 98.1 8.7E-05 3E-09 78.7 18.1 179 158-362 179-387 (437)
198 4b4t_H 26S protease regulatory 98.1 3.8E-05 1.3E-09 81.2 15.0 178 159-362 208-415 (467)
199 1l8q_A Chromosomal replication 98.1 3.6E-05 1.2E-09 79.6 14.6 167 169-364 23-203 (324)
200 4b4t_I 26S protease regulatory 98.0 0.00011 3.8E-09 76.9 17.1 180 157-362 179-388 (437)
201 4b4t_K 26S protease regulatory 98.0 0.00013 4.4E-09 77.2 17.2 180 157-362 169-379 (428)
202 3e4g_A ATP synthase subunit S, 98.0 3.8E-06 1.3E-10 77.2 4.1 82 598-679 61-150 (176)
203 1io0_A Tropomodulin; LRR prote 97.9 6.7E-06 2.3E-10 77.4 5.3 109 569-678 30-161 (185)
204 1qvr_A CLPB protein; coiled co 97.9 4.7E-05 1.6E-09 89.3 13.2 179 157-359 167-369 (854)
205 3rw6_A Nuclear RNA export fact 97.9 1.4E-05 4.7E-10 79.3 6.5 62 572-633 167-233 (267)
206 2gno_A DNA polymerase III, gam 97.8 9.2E-05 3.2E-09 75.3 12.0 146 164-338 1-152 (305)
207 3pxi_A Negative regulator of g 97.8 8.6E-05 2.9E-09 86.1 13.3 152 157-339 177-339 (758)
208 1lv7_A FTSH; alpha/beta domain 97.8 0.00099 3.4E-08 66.0 19.3 181 157-366 9-222 (257)
209 1r6b_X CLPA protein; AAA+, N-t 97.8 0.00023 8E-09 82.5 16.1 158 157-338 183-362 (758)
210 1io0_A Tropomodulin; LRR prote 97.8 2.1E-05 7.3E-10 73.9 5.9 116 592-713 30-164 (185)
211 2ra8_A Uncharacterized protein 97.8 3E-05 1E-09 81.0 7.3 19 320-338 38-57 (362)
212 3hu3_A Transitional endoplasmi 97.8 0.00054 1.9E-08 74.3 17.2 180 159-367 203-413 (489)
213 3ec2_A DNA replication protein 97.7 2.7E-05 9.3E-10 72.8 5.4 90 165-272 19-111 (180)
214 3n70_A Transport activator; si 97.7 2.6E-05 8.7E-10 70.1 4.7 45 161-205 2-48 (145)
215 2w58_A DNAI, primosome compone 97.7 9.5E-05 3.3E-09 70.5 8.9 88 166-272 35-126 (202)
216 2ce7_A Cell division protein F 97.7 0.00082 2.8E-08 72.3 17.0 175 159-362 15-221 (476)
217 2r62_A Cell division protease 97.7 5.3E-05 1.8E-09 75.9 6.7 175 159-362 10-218 (268)
218 3rw6_A Nuclear RNA export fact 97.7 6.2E-05 2.1E-09 74.6 7.0 79 595-674 167-257 (267)
219 4fcw_A Chaperone protein CLPB; 97.6 0.00016 5.6E-09 74.0 10.5 105 161-273 18-131 (311)
220 1in4_A RUVB, holliday junction 97.5 0.0016 5.5E-08 67.3 16.0 181 156-368 21-222 (334)
221 1ofh_A ATP-dependent HSL prote 97.5 0.0005 1.7E-08 70.2 11.9 46 161-206 16-75 (310)
222 3cf2_A TER ATPase, transitiona 97.4 0.001 3.5E-08 75.9 13.9 176 159-363 203-408 (806)
223 2c9o_A RUVB-like 1; hexameric 97.4 0.0013 4.3E-08 71.2 14.1 48 159-206 36-88 (456)
224 1ixz_A ATP-dependent metallopr 97.2 0.011 3.8E-07 58.2 17.5 151 183-362 51-221 (254)
225 2bjv_A PSP operon transcriptio 97.2 0.00047 1.6E-08 68.8 6.9 61 160-222 6-68 (265)
226 3m6a_A ATP-dependent protease 97.2 0.0017 5.9E-08 71.6 12.0 165 161-338 82-266 (543)
227 1iy2_A ATP-dependent metallopr 97.1 0.027 9.4E-07 56.2 19.1 177 157-362 37-245 (278)
228 1r6b_X CLPA protein; AAA+, N-t 97.0 0.0025 8.4E-08 73.9 11.3 102 161-273 459-569 (758)
229 3pxi_A Negative regulator of g 97.0 0.0017 5.8E-08 75.2 9.8 157 160-338 491-675 (758)
230 1ojl_A Transcriptional regulat 96.9 0.0012 4E-08 67.2 6.7 45 161-205 3-49 (304)
231 2dhr_A FTSH; AAA+ protein, hex 96.8 0.01 3.4E-07 64.3 13.6 176 158-362 29-236 (499)
232 1n0w_A DNA repair protein RAD5 96.8 0.0059 2E-07 59.6 10.4 92 180-272 23-130 (243)
233 2cvh_A DNA repair and recombin 96.7 0.0053 1.8E-07 58.9 9.6 51 180-236 19-69 (220)
234 2vhj_A Ntpase P4, P4; non- hyd 96.7 0.0014 4.8E-08 65.9 5.3 69 181-272 123-193 (331)
235 1ypw_A Transitional endoplasmi 96.7 0.008 2.7E-07 69.6 12.4 176 158-362 202-407 (806)
236 3io5_A Recombination and repai 96.5 0.0092 3.1E-07 59.8 9.9 85 183-272 30-122 (333)
237 2x8a_A Nuclear valosin-contain 96.5 0.0082 2.8E-07 59.9 9.7 157 159-339 9-192 (274)
238 1v5w_A DMC1, meiotic recombina 96.5 0.014 4.8E-07 60.3 11.6 92 180-272 121-230 (343)
239 3hr8_A Protein RECA; alpha and 96.5 0.0088 3E-07 61.6 9.9 85 181-272 61-150 (356)
240 3t15_A Ribulose bisphosphate c 96.5 0.0017 5.8E-08 65.7 4.4 27 180-206 35-61 (293)
241 2kjq_A DNAA-related protein; s 96.5 0.0029 9.8E-08 56.7 5.3 39 180-220 35-73 (149)
242 2qgz_A Helicase loader, putati 96.4 0.008 2.8E-07 61.1 9.0 54 165-220 133-190 (308)
243 2i1q_A DNA repair and recombin 96.4 0.0087 3E-07 61.3 9.2 91 180-271 97-214 (322)
244 2z43_A DNA repair and recombin 96.4 0.012 4.2E-07 60.2 10.2 91 181-272 107-214 (324)
245 1qvr_A CLPB protein; coiled co 96.4 0.0058 2E-07 71.6 8.7 60 161-222 559-627 (854)
246 1xp8_A RECA protein, recombina 96.2 0.016 5.5E-07 60.1 10.1 85 181-272 74-163 (366)
247 2zr9_A Protein RECA, recombina 96.2 0.017 5.9E-07 59.6 10.2 86 180-272 60-150 (349)
248 3cf2_A TER ATPase, transitiona 96.2 0.0085 2.9E-07 68.4 8.5 95 158-273 475-582 (806)
249 1jr3_D DNA polymerase III, del 96.2 0.049 1.7E-06 56.2 13.7 159 179-368 16-184 (343)
250 4gt6_A Cell surface protein; l 96.1 0.021 7E-07 60.4 10.8 132 565-711 255-389 (394)
251 1u94_A RECA protein, recombina 96.0 0.021 7.1E-07 59.1 9.8 86 180-272 62-152 (356)
252 3lda_A DNA repair protein RAD5 96.0 0.02 6.9E-07 60.1 9.8 91 181-272 178-284 (400)
253 2w0m_A SSO2452; RECA, SSPF, un 96.0 0.028 9.5E-07 54.2 10.1 47 181-231 23-69 (235)
254 4a74_A DNA repair and recombin 95.9 0.028 9.6E-07 54.1 9.8 91 181-272 25-136 (231)
255 1rz3_A Hypothetical protein rb 95.9 0.0086 2.9E-07 56.7 5.9 44 164-207 2-48 (201)
256 4fs7_A Uncharacterized protein 95.9 0.07 2.4E-06 56.2 13.4 146 548-709 229-375 (394)
257 3c8u_A Fructokinase; YP_612366 95.8 0.01 3.5E-07 56.5 5.9 52 167-220 6-59 (208)
258 2px0_A Flagellar biosynthesis 95.8 0.031 1.1E-06 56.2 9.7 59 180-239 104-163 (296)
259 3co5_A Putative two-component 95.7 0.0036 1.2E-07 55.7 2.1 45 161-205 5-51 (143)
260 3dm5_A SRP54, signal recogniti 95.7 0.062 2.1E-06 56.8 11.8 29 180-208 99-127 (443)
261 3ice_A Transcription terminati 95.7 0.018 6E-07 59.3 7.2 99 171-273 163-273 (422)
262 1sky_E F1-ATPase, F1-ATP synth 95.5 0.022 7.6E-07 60.4 7.4 90 182-272 152-256 (473)
263 3bh0_A DNAB-like replicative h 95.5 0.055 1.9E-06 55.1 10.3 51 181-235 68-118 (315)
264 1odf_A YGR205W, hypothetical 3 95.5 0.084 2.9E-06 52.8 11.3 29 179-207 29-57 (290)
265 3kb2_A SPBC2 prophage-derived 95.4 0.0099 3.4E-07 54.4 3.9 25 182-206 2-26 (173)
266 4akg_A Glutathione S-transfera 95.4 0.11 3.9E-06 66.9 14.5 79 182-271 1268-1346(2695)
267 2r44_A Uncharacterized protein 95.3 0.021 7E-07 58.8 6.4 44 161-206 28-71 (331)
268 1qhx_A CPT, protein (chloramph 95.3 0.01 3.5E-07 54.7 3.7 25 182-206 4-28 (178)
269 3kl4_A SRP54, signal recogniti 95.2 0.094 3.2E-06 55.4 11.3 57 180-239 96-154 (433)
270 4h09_A Hypothetical leucine ri 95.2 0.048 1.7E-06 57.1 9.2 124 547-677 215-342 (379)
271 1pzn_A RAD51, DNA repair and r 95.2 0.072 2.5E-06 55.0 10.3 93 180-273 130-243 (349)
272 3vaa_A Shikimate kinase, SK; s 95.2 0.013 4.5E-07 55.3 4.1 27 180-206 24-50 (199)
273 3lw7_A Adenylate kinase relate 95.2 0.011 3.6E-07 54.3 3.4 20 182-201 2-21 (179)
274 1g8p_A Magnesium-chelatase 38 95.1 0.012 4.2E-07 60.9 4.0 51 156-206 20-70 (350)
275 2ehv_A Hypothetical protein PH 95.1 0.038 1.3E-06 54.0 7.3 38 180-219 29-67 (251)
276 2dr3_A UPF0273 protein PH0284; 95.0 0.1 3.5E-06 50.6 10.4 39 181-221 23-61 (247)
277 2ck3_D ATP synthase subunit be 95.0 0.09 3.1E-06 55.7 10.3 101 171-272 142-264 (482)
278 3trf_A Shikimate kinase, SK; a 95.0 0.015 5E-07 54.1 3.9 26 181-206 5-30 (185)
279 1kgd_A CASK, peripheral plasma 94.9 0.014 4.9E-07 54.0 3.6 26 181-206 5-30 (180)
280 2hf9_A Probable hydrogenase ni 94.9 0.024 8.1E-07 54.5 5.3 40 168-207 25-64 (226)
281 1ly1_A Polynucleotide kinase; 94.9 0.014 4.9E-07 53.8 3.5 22 182-203 3-24 (181)
282 2xxa_A Signal recognition part 94.9 0.1 3.5E-06 55.3 10.5 90 180-270 99-192 (433)
283 4eun_A Thermoresistant glucoki 94.9 0.018 6E-07 54.4 4.1 27 179-205 27-53 (200)
284 1zp6_A Hypothetical protein AT 94.9 0.015 5.2E-07 54.2 3.6 25 180-204 8-32 (191)
285 3uie_A Adenylyl-sulfate kinase 94.9 0.019 6.4E-07 54.2 4.2 29 178-206 22-50 (200)
286 1kag_A SKI, shikimate kinase I 94.9 0.014 4.6E-07 53.6 3.2 25 182-206 5-29 (173)
287 3e70_C DPA, signal recognition 94.8 0.35 1.2E-05 49.2 13.9 57 179-238 127-185 (328)
288 1nks_A Adenylate kinase; therm 94.8 0.018 6.1E-07 53.8 3.8 26 182-207 2-27 (194)
289 2yvu_A Probable adenylyl-sulfa 94.8 0.021 7.3E-07 53.0 4.3 28 180-207 12-39 (186)
290 3t61_A Gluconokinase; PSI-biol 94.8 0.015 5.2E-07 54.9 3.3 25 181-205 18-42 (202)
291 4gt6_A Cell surface protein; l 94.8 0.58 2E-05 49.0 16.0 106 594-711 261-368 (394)
292 2rhm_A Putative kinase; P-loop 94.8 0.02 6.9E-07 53.4 4.1 25 181-205 5-29 (193)
293 1kht_A Adenylate kinase; phosp 94.7 0.02 7E-07 53.3 4.0 26 182-207 4-29 (192)
294 3iij_A Coilin-interacting nucl 94.7 0.019 6.3E-07 53.1 3.6 26 181-206 11-36 (180)
295 4fs7_A Uncharacterized protein 94.6 0.13 4.5E-06 54.0 10.7 61 614-677 156-217 (394)
296 1xjc_A MOBB protein homolog; s 94.6 0.026 9E-07 51.3 4.4 28 180-207 3-30 (169)
297 1zuh_A Shikimate kinase; alpha 94.6 0.021 7.4E-07 52.0 3.9 27 180-206 6-32 (168)
298 4h09_A Hypothetical leucine ri 94.6 0.13 4.5E-06 53.7 10.5 109 566-678 208-320 (379)
299 3cmu_A Protein RECA, recombina 94.6 0.086 2.9E-06 65.7 10.0 85 180-271 1426-1515(2050)
300 1via_A Shikimate kinase; struc 94.6 0.019 6.4E-07 52.8 3.3 25 182-206 5-29 (175)
301 2ga8_A Hypothetical 39.9 kDa p 94.6 0.043 1.5E-06 56.0 6.2 42 166-207 5-50 (359)
302 2ze6_A Isopentenyl transferase 94.6 0.021 7.2E-07 56.1 3.8 25 182-206 2-26 (253)
303 3hws_A ATP-dependent CLP prote 94.6 0.034 1.2E-06 57.9 5.7 44 162-205 17-75 (363)
304 4a1f_A DNAB helicase, replicat 94.5 0.16 5.4E-06 51.9 10.4 51 181-235 46-96 (338)
305 1fx0_B ATP synthase beta chain 94.5 0.092 3.1E-06 55.9 8.8 100 172-272 155-277 (498)
306 1knq_A Gluconate kinase; ALFA/ 94.5 0.023 7.9E-07 52.2 3.9 25 181-205 8-32 (175)
307 3tau_A Guanylate kinase, GMP k 94.5 0.024 8.1E-07 53.9 4.0 27 180-206 7-33 (208)
308 2jaq_A Deoxyguanosine kinase; 94.5 0.023 7.9E-07 53.5 3.9 24 183-206 2-25 (205)
309 2wsm_A Hydrogenase expression/ 94.5 0.027 9.1E-07 54.0 4.3 41 166-206 15-55 (221)
310 2c95_A Adenylate kinase 1; tra 94.5 0.026 8.9E-07 52.8 4.2 26 180-205 8-33 (196)
311 3tr0_A Guanylate kinase, GMP k 94.4 0.025 8.5E-07 53.4 4.0 25 181-205 7-31 (205)
312 1ls1_A Signal recognition part 94.4 0.15 5.3E-06 51.1 10.0 88 180-270 97-189 (295)
313 3rfe_A Platelet glycoprotein I 94.4 0.041 1.4E-06 47.8 5.0 51 602-653 12-65 (130)
314 1gvn_B Zeta; postsegregational 94.4 0.037 1.3E-06 55.4 5.4 26 180-205 32-57 (287)
315 2qor_A Guanylate kinase; phosp 94.4 0.021 7.3E-07 54.0 3.4 26 180-205 11-36 (204)
316 1pgv_A TMD-1, tropomodulin TMD 94.4 0.058 2E-06 50.3 6.2 83 570-652 36-135 (197)
317 3umf_A Adenylate kinase; rossm 94.4 0.028 9.5E-07 53.6 4.1 28 179-206 27-54 (217)
318 3nbx_X ATPase RAVA; AAA+ ATPas 94.4 0.024 8.3E-07 61.3 4.2 44 161-206 23-66 (500)
319 2iyv_A Shikimate kinase, SK; t 94.4 0.021 7E-07 53.0 3.1 25 182-206 3-27 (184)
320 1y63_A LMAJ004144AAA protein; 94.3 0.029 9.9E-07 52.1 4.1 25 180-204 9-33 (184)
321 1tev_A UMP-CMP kinase; ploop, 94.3 0.027 9.2E-07 52.6 3.9 25 181-205 3-27 (196)
322 1j8m_F SRP54, signal recogniti 94.3 0.22 7.6E-06 49.9 10.9 88 181-270 98-189 (297)
323 1ye8_A Protein THEP1, hypothet 94.3 0.028 9.4E-07 51.9 3.9 25 183-207 2-26 (178)
324 2bdt_A BH3686; alpha-beta prot 94.3 0.025 8.4E-07 52.7 3.5 22 182-203 3-24 (189)
325 1cke_A CK, MSSA, protein (cyti 94.3 0.026 9E-07 54.3 3.8 25 182-206 6-30 (227)
326 1vma_A Cell division protein F 94.3 0.19 6.6E-06 50.6 10.3 88 180-271 103-196 (306)
327 2j41_A Guanylate kinase; GMP, 94.3 0.029 9.9E-07 53.0 4.0 25 181-205 6-30 (207)
328 1um8_A ATP-dependent CLP prote 94.3 0.043 1.5E-06 57.5 5.7 25 181-205 72-96 (376)
329 2j37_W Signal recognition part 94.2 0.38 1.3E-05 51.9 13.1 38 180-219 100-137 (504)
330 3asz_A Uridine kinase; cytidin 94.2 0.031 1.1E-06 53.1 4.2 27 180-206 5-31 (211)
331 3a00_A Guanylate kinase, GMP k 94.2 0.022 7.5E-07 53.0 3.0 25 182-206 2-26 (186)
332 1ukz_A Uridylate kinase; trans 94.2 0.032 1.1E-06 52.7 4.2 26 180-205 14-39 (203)
333 2zts_A Putative uncharacterize 94.2 0.072 2.5E-06 51.9 6.9 49 181-232 30-78 (251)
334 2bbw_A Adenylate kinase 4, AK4 94.2 0.031 1E-06 54.7 4.1 27 180-206 26-52 (246)
335 3rfe_A Platelet glycoprotein I 94.2 0.075 2.6E-06 46.1 6.2 53 579-633 12-68 (130)
336 3cm0_A Adenylate kinase; ATP-b 94.2 0.03 1E-06 51.9 3.8 24 182-205 5-28 (186)
337 1e6c_A Shikimate kinase; phosp 94.2 0.026 8.8E-07 51.7 3.3 25 182-206 3-27 (173)
338 1uf9_A TT1252 protein; P-loop, 94.2 0.029 1E-06 52.8 3.8 26 179-204 6-31 (203)
339 2bwj_A Adenylate kinase 5; pho 94.2 0.029 1E-06 52.6 3.8 26 181-206 12-37 (199)
340 2cdn_A Adenylate kinase; phosp 94.1 0.036 1.2E-06 52.2 4.4 26 181-206 20-45 (201)
341 2plr_A DTMP kinase, probable t 94.1 0.033 1.1E-06 52.8 4.1 26 182-207 5-30 (213)
342 3jvv_A Twitching mobility prot 94.0 0.021 7.3E-07 59.0 2.7 111 180-310 122-234 (356)
343 1lvg_A Guanylate kinase, GMP k 94.0 0.028 9.4E-07 53.0 3.3 26 181-206 4-29 (198)
344 2if2_A Dephospho-COA kinase; a 94.0 0.029 9.8E-07 53.0 3.5 22 182-203 2-23 (204)
345 3tlx_A Adenylate kinase 2; str 94.0 0.065 2.2E-06 52.2 6.1 27 179-205 27-53 (243)
346 3a4m_A L-seryl-tRNA(SEC) kinas 94.0 0.033 1.1E-06 55.0 3.9 26 181-206 4-29 (260)
347 1g5t_A COB(I)alamin adenosyltr 94.0 0.088 3E-06 48.8 6.6 115 181-309 28-165 (196)
348 3tqc_A Pantothenate kinase; bi 94.0 0.051 1.8E-06 55.1 5.4 44 163-206 70-117 (321)
349 3ney_A 55 kDa erythrocyte memb 94.0 0.036 1.2E-06 51.8 3.9 27 180-206 18-44 (197)
350 3l0o_A Transcription terminati 94.0 0.36 1.2E-05 49.6 11.4 51 171-222 164-216 (427)
351 1ex7_A Guanylate kinase; subst 94.0 0.029 9.8E-07 52.1 3.2 25 182-206 2-26 (186)
352 2pt5_A Shikimate kinase, SK; a 93.9 0.036 1.2E-06 50.3 3.8 24 183-206 2-25 (168)
353 1rj9_A FTSY, signal recognitio 93.9 0.044 1.5E-06 55.3 4.7 28 180-207 101-128 (304)
354 1qf9_A UMP/CMP kinase, protein 93.9 0.035 1.2E-06 51.7 3.8 26 181-206 6-31 (194)
355 4gp7_A Metallophosphoesterase; 93.9 0.027 9.2E-07 51.6 2.8 22 180-201 8-29 (171)
356 2vli_A Antibiotic resistance p 93.9 0.025 8.6E-07 52.3 2.6 26 181-206 5-30 (183)
357 1aky_A Adenylate kinase; ATP:A 93.9 0.04 1.4E-06 52.8 4.1 26 181-206 4-29 (220)
358 2pbr_A DTMP kinase, thymidylat 93.9 0.038 1.3E-06 51.5 3.9 25 183-207 2-26 (195)
359 3fwy_A Light-independent proto 93.8 0.043 1.5E-06 55.7 4.5 41 179-221 46-86 (314)
360 2yhs_A FTSY, cell division pro 93.8 0.7 2.4E-05 49.4 13.8 42 180-224 292-333 (503)
361 2qt1_A Nicotinamide riboside k 93.8 0.036 1.2E-06 52.5 3.7 25 180-204 20-44 (207)
362 3aez_A Pantothenate kinase; tr 93.8 0.073 2.5E-06 53.9 6.1 42 179-220 88-129 (312)
363 1tue_A Replication protein E1; 93.8 0.058 2E-06 50.3 4.8 38 169-206 45-83 (212)
364 2wwf_A Thymidilate kinase, put 93.8 0.043 1.5E-06 52.0 4.2 32 181-213 10-41 (212)
365 2p5t_B PEZT; postsegregational 93.8 0.047 1.6E-06 53.6 4.5 27 180-206 31-57 (253)
366 1nn5_A Similar to deoxythymidy 93.8 0.045 1.5E-06 52.0 4.3 32 181-213 9-40 (215)
367 2q6t_A DNAB replication FORK h 93.7 0.22 7.5E-06 53.3 10.1 52 181-235 200-251 (444)
368 2b8t_A Thymidine kinase; deoxy 93.7 0.038 1.3E-06 52.9 3.6 111 180-308 11-127 (223)
369 2f1r_A Molybdopterin-guanine d 93.7 0.037 1.2E-06 50.6 3.4 27 182-208 3-29 (171)
370 1znw_A Guanylate kinase, GMP k 93.7 0.036 1.2E-06 52.6 3.4 27 180-206 19-45 (207)
371 3fb4_A Adenylate kinase; psych 93.7 0.042 1.4E-06 52.4 3.9 23 183-205 2-24 (216)
372 2ffh_A Protein (FFH); SRP54, s 93.6 0.34 1.2E-05 51.0 11.1 57 180-239 97-155 (425)
373 1jjv_A Dephospho-COA kinase; P 93.6 0.036 1.2E-06 52.4 3.4 22 182-203 3-24 (206)
374 2grj_A Dephospho-COA kinase; T 93.6 0.045 1.5E-06 51.1 3.9 27 179-205 10-36 (192)
375 4e22_A Cytidylate kinase; P-lo 93.6 0.043 1.5E-06 53.9 3.9 27 180-206 26-52 (252)
376 1zak_A Adenylate kinase; ATP:A 93.6 0.04 1.4E-06 52.8 3.7 26 181-206 5-30 (222)
377 1gtv_A TMK, thymidylate kinase 93.6 0.025 8.7E-07 53.8 2.2 25 183-207 2-26 (214)
378 1uj2_A Uridine-cytidine kinase 93.6 0.042 1.4E-06 53.9 3.8 28 179-206 20-47 (252)
379 1zd8_A GTP:AMP phosphotransfer 93.6 0.042 1.5E-06 52.9 3.7 25 181-205 7-31 (227)
380 2jeo_A Uridine-cytidine kinase 93.5 0.045 1.6E-06 53.4 3.9 27 179-205 23-49 (245)
381 2z0h_A DTMP kinase, thymidylat 93.5 0.048 1.6E-06 51.0 3.9 25 183-207 2-26 (197)
382 1htw_A HI0065; nucleotide-bind 93.5 0.046 1.6E-06 49.2 3.5 27 179-205 31-57 (158)
383 1z6g_A Guanylate kinase; struc 93.4 0.04 1.4E-06 52.7 3.3 26 180-205 22-47 (218)
384 2r6a_A DNAB helicase, replicat 93.3 0.31 1.1E-05 52.3 10.5 50 181-233 203-252 (454)
385 2i3b_A HCR-ntpase, human cance 93.3 0.047 1.6E-06 50.8 3.5 25 182-206 2-26 (189)
386 3k1j_A LON protease, ATP-depen 93.3 0.054 1.9E-06 60.6 4.5 49 156-206 37-85 (604)
387 1m7g_A Adenylylsulfate kinase; 93.2 0.061 2.1E-06 51.1 4.2 28 179-206 23-50 (211)
388 3dl0_A Adenylate kinase; phosp 93.2 0.051 1.7E-06 51.8 3.7 23 183-205 2-24 (216)
389 3sr0_A Adenylate kinase; phosp 93.2 0.056 1.9E-06 51.1 3.9 24 183-206 2-25 (206)
390 1g41_A Heat shock protein HSLU 93.2 0.06 2E-06 57.0 4.5 46 161-206 16-75 (444)
391 1s96_A Guanylate kinase, GMP k 93.2 0.055 1.9E-06 51.7 3.8 27 180-206 15-41 (219)
392 3vkg_A Dynein heavy chain, cyt 93.2 0.45 1.5E-05 62.2 12.9 88 172-272 1296-1385(3245)
393 3lv8_A DTMP kinase, thymidylat 93.1 0.15 5.2E-06 49.2 6.9 36 181-217 27-62 (236)
394 1np6_A Molybdopterin-guanine d 93.1 0.11 3.6E-06 47.7 5.5 27 181-207 6-32 (174)
395 2v54_A DTMP kinase, thymidylat 93.1 0.057 1.9E-06 50.8 3.8 25 181-205 4-28 (204)
396 3r20_A Cytidylate kinase; stru 93.1 0.058 2E-06 51.9 3.8 26 181-206 9-34 (233)
397 3b9q_A Chloroplast SRP recepto 93.1 0.069 2.4E-06 53.8 4.5 28 180-207 99-126 (302)
398 3p32_A Probable GTPase RV1496/ 93.0 0.13 4.4E-06 53.3 6.6 39 169-207 65-105 (355)
399 2pez_A Bifunctional 3'-phospho 93.0 0.07 2.4E-06 49.1 4.1 27 181-207 5-31 (179)
400 3end_A Light-independent proto 93.0 0.15 5.1E-06 51.5 6.9 44 178-223 38-81 (307)
401 4tmk_A Protein (thymidylate ki 93.0 0.17 5.7E-06 48.1 6.7 52 182-234 4-55 (213)
402 2onk_A Molybdate/tungstate ABC 92.9 0.059 2E-06 52.3 3.6 26 179-205 23-48 (240)
403 3be4_A Adenylate kinase; malar 92.9 0.059 2E-06 51.5 3.5 24 182-205 6-29 (217)
404 3nwj_A ATSK2; P loop, shikimat 92.9 0.055 1.9E-06 52.8 3.3 26 181-206 48-73 (250)
405 3ake_A Cytidylate kinase; CMP 92.8 0.067 2.3E-06 50.5 3.9 24 183-206 4-27 (208)
406 3d3q_A TRNA delta(2)-isopenten 92.8 0.059 2E-06 54.9 3.5 25 182-206 8-32 (340)
407 3bgw_A DNAB-like replicative h 92.8 0.42 1.4E-05 51.0 10.3 50 181-234 197-246 (444)
408 2c61_A A-type ATP synthase non 92.8 0.086 2.9E-06 55.8 4.8 101 172-272 142-260 (469)
409 1ak2_A Adenylate kinase isoenz 92.8 0.078 2.7E-06 51.2 4.3 26 181-206 16-41 (233)
410 1e4v_A Adenylate kinase; trans 92.7 0.068 2.3E-06 50.9 3.8 23 183-205 2-24 (214)
411 2xb4_A Adenylate kinase; ATP-b 92.7 0.069 2.4E-06 51.2 3.8 23 183-205 2-24 (223)
412 1vht_A Dephospho-COA kinase; s 92.7 0.071 2.4E-06 50.9 3.9 23 181-203 4-26 (218)
413 3cmu_A Protein RECA, recombina 92.6 0.28 9.7E-06 61.2 9.8 86 180-272 382-472 (2050)
414 2f6r_A COA synthase, bifunctio 92.6 0.069 2.4E-06 53.3 3.7 23 180-202 74-96 (281)
415 1cr0_A DNA primase/helicase; R 92.6 0.2 6.9E-06 50.3 7.2 39 180-219 34-72 (296)
416 3cmw_A Protein RECA, recombina 92.5 0.28 9.6E-06 60.4 9.5 86 180-272 731-821 (1706)
417 3lnc_A Guanylate kinase, GMP k 92.5 0.045 1.5E-06 52.9 2.2 25 181-205 27-52 (231)
418 3gqb_B V-type ATP synthase bet 92.5 0.11 3.7E-06 54.7 5.0 101 172-272 137-262 (464)
419 2og2_A Putative signal recogni 92.5 0.093 3.2E-06 54.1 4.5 28 180-207 156-183 (359)
420 3ld9_A DTMP kinase, thymidylat 92.5 0.18 6.2E-06 48.1 6.3 30 178-207 18-47 (223)
421 3crm_A TRNA delta(2)-isopenten 92.4 0.075 2.6E-06 53.7 3.7 24 182-205 6-29 (323)
422 1sq5_A Pantothenate kinase; P- 92.4 0.077 2.6E-06 53.8 3.8 28 179-206 78-105 (308)
423 3tif_A Uncharacterized ABC tra 92.4 0.068 2.3E-06 51.8 3.3 26 180-205 30-55 (235)
424 2pcj_A ABC transporter, lipopr 92.4 0.058 2E-06 51.8 2.8 26 180-205 29-54 (224)
425 3vr4_D V-type sodium ATPase su 92.4 0.11 3.9E-06 54.6 5.1 101 172-272 141-259 (465)
426 3b85_A Phosphate starvation-in 92.4 0.056 1.9E-06 51.2 2.5 24 181-204 22-45 (208)
427 3upu_A ATP-dependent DNA helic 92.3 0.25 8.5E-06 53.1 7.9 44 164-208 29-72 (459)
428 1zu4_A FTSY; GTPase, signal re 92.3 0.1 3.6E-06 53.0 4.6 38 180-219 104-141 (320)
429 3exa_A TRNA delta(2)-isopenten 92.3 0.085 2.9E-06 52.8 3.8 25 181-205 3-27 (322)
430 3foz_A TRNA delta(2)-isopenten 92.1 0.1 3.5E-06 52.1 4.2 26 180-205 9-34 (316)
431 1yrb_A ATP(GTP)binding protein 92.1 0.11 3.6E-06 51.2 4.4 27 180-206 13-39 (262)
432 1a7j_A Phosphoribulokinase; tr 92.1 0.055 1.9E-06 54.3 2.3 27 180-206 4-30 (290)
433 2eyu_A Twitching motility prot 92.1 0.17 5.8E-06 49.8 5.8 29 179-207 23-51 (261)
434 4eaq_A DTMP kinase, thymidylat 92.0 0.16 5.6E-06 48.8 5.5 28 180-207 25-52 (229)
435 2cbz_A Multidrug resistance-as 92.0 0.08 2.7E-06 51.3 3.3 27 180-206 30-56 (237)
436 1pgv_A TMD-1, tropomodulin TMD 92.0 0.12 4.1E-06 48.1 4.3 83 570-652 65-166 (197)
437 1q57_A DNA primase/helicase; d 92.0 0.57 1.9E-05 51.0 10.4 52 181-235 242-293 (503)
438 2d2e_A SUFC protein; ABC-ATPas 91.9 0.087 3E-06 51.5 3.4 25 180-204 28-52 (250)
439 3gfo_A Cobalt import ATP-bindi 91.9 0.073 2.5E-06 52.8 2.9 26 180-205 33-58 (275)
440 3a8t_A Adenylate isopentenyltr 91.9 0.084 2.9E-06 53.5 3.3 25 181-205 40-64 (339)
441 1b0u_A Histidine permease; ABC 91.9 0.084 2.9E-06 52.0 3.2 26 180-205 31-56 (262)
442 1ji0_A ABC transporter; ATP bi 91.8 0.078 2.7E-06 51.5 2.9 26 180-205 31-56 (240)
443 1oix_A RAS-related protein RAB 91.8 0.096 3.3E-06 48.7 3.4 25 181-205 29-53 (191)
444 1sgw_A Putative ABC transporte 91.7 0.068 2.3E-06 50.8 2.3 25 181-205 35-59 (214)
445 4g1u_C Hemin import ATP-bindin 91.7 0.079 2.7E-06 52.3 2.9 26 180-205 36-61 (266)
446 2pze_A Cystic fibrosis transme 91.7 0.081 2.8E-06 51.0 2.9 27 180-206 33-59 (229)
447 1g6h_A High-affinity branched- 91.7 0.081 2.8E-06 52.0 2.9 26 180-205 32-57 (257)
448 2zu0_C Probable ATP-dependent 91.6 0.11 3.7E-06 51.4 3.8 25 180-204 45-69 (267)
449 2olj_A Amino acid ABC transpor 91.6 0.092 3.2E-06 51.7 3.2 26 180-205 49-74 (263)
450 2ff7_A Alpha-hemolysin translo 91.6 0.084 2.9E-06 51.5 2.9 26 180-205 34-59 (247)
451 2v9p_A Replication protein E1; 91.5 0.12 4E-06 52.0 3.9 27 179-205 124-150 (305)
452 1ltq_A Polynucleotide kinase; 91.5 0.1 3.5E-06 52.6 3.5 23 182-204 3-25 (301)
453 1q3t_A Cytidylate kinase; nucl 91.4 0.14 4.7E-06 49.5 4.3 26 180-205 15-40 (236)
454 4edh_A DTMP kinase, thymidylat 91.4 0.31 1.1E-05 46.2 6.6 32 181-213 6-37 (213)
455 1mv5_A LMRA, multidrug resista 91.4 0.099 3.4E-06 50.9 3.2 26 180-205 27-52 (243)
456 2r8r_A Sensor protein; KDPD, P 91.4 0.23 7.9E-06 47.2 5.6 37 183-221 8-44 (228)
457 3vr4_A V-type sodium ATPase ca 91.4 1 3.6E-05 48.5 11.2 58 171-232 221-280 (600)
458 1vpl_A ABC transporter, ATP-bi 91.4 0.1 3.5E-06 51.2 3.2 26 180-205 40-65 (256)
459 3cmw_A Protein RECA, recombina 91.3 0.42 1.4E-05 58.9 9.1 85 180-271 1430-1519(1706)
460 1nlf_A Regulatory protein REPA 91.3 0.1 3.5E-06 51.9 3.3 27 180-206 29-55 (279)
461 2qi9_C Vitamin B12 import ATP- 91.3 0.094 3.2E-06 51.2 2.9 26 180-205 25-50 (249)
462 2ghi_A Transport protein; mult 91.3 0.11 3.6E-06 51.2 3.3 26 180-205 45-70 (260)
463 2ixe_A Antigen peptide transpo 91.2 0.11 3.7E-06 51.5 3.3 26 180-205 44-69 (271)
464 2f9l_A RAB11B, member RAS onco 91.2 0.12 4.2E-06 48.3 3.5 23 182-204 6-28 (199)
465 2nq2_C Hypothetical ABC transp 91.2 0.098 3.3E-06 51.2 2.9 26 180-205 30-55 (253)
466 3mfy_A V-type ATP synthase alp 91.2 0.69 2.4E-05 49.7 9.5 58 171-232 216-275 (588)
467 2dyk_A GTP-binding protein; GT 91.2 0.13 4.6E-06 45.8 3.6 23 182-204 2-24 (161)
468 2yz2_A Putative ABC transporte 91.1 0.11 3.8E-06 51.2 3.3 26 180-205 32-57 (266)
469 1u0j_A DNA replication protein 91.1 0.23 7.9E-06 48.5 5.4 37 169-205 90-128 (267)
470 3zvl_A Bifunctional polynucleo 91.1 0.093 3.2E-06 55.6 2.8 28 178-205 255-282 (416)
471 2ged_A SR-beta, signal recogni 91.1 0.25 8.6E-06 45.7 5.6 25 180-204 47-71 (193)
472 2wji_A Ferrous iron transport 91.1 0.13 4.3E-06 46.5 3.4 22 182-203 4-25 (165)
473 2ihy_A ABC transporter, ATP-bi 91.1 0.1 3.4E-06 51.9 2.9 26 180-205 46-71 (279)
474 3eph_A TRNA isopentenyltransfe 91.0 0.13 4.5E-06 53.4 3.7 25 182-206 3-27 (409)
475 1g8f_A Sulfate adenylyltransfe 90.9 0.24 8.3E-06 53.5 5.9 45 163-207 375-421 (511)
476 2v3c_C SRP54, signal recogniti 90.9 0.1 3.4E-06 55.4 2.8 37 181-219 99-135 (432)
477 1svm_A Large T antigen; AAA+ f 90.8 0.15 5.1E-06 53.0 3.9 27 179-205 167-193 (377)
478 2zej_A Dardarin, leucine-rich 90.7 0.12 4.1E-06 47.6 2.9 21 183-203 4-24 (184)
479 2ocp_A DGK, deoxyguanosine kin 90.7 0.16 5.4E-06 49.3 3.8 26 181-206 2-27 (241)
480 2qmh_A HPR kinase/phosphorylas 90.7 0.1 3.5E-06 48.4 2.3 25 181-205 34-58 (205)
481 2ce2_X GTPase HRAS; signaling 90.6 0.14 4.8E-06 45.7 3.2 23 183-205 5-27 (166)
482 3io3_A DEHA2D07832P; chaperone 90.5 0.38 1.3E-05 49.3 6.7 46 177-224 14-61 (348)
483 3sop_A Neuronal-specific septi 90.5 0.15 5E-06 50.5 3.4 25 183-207 4-28 (270)
484 2orw_A Thymidine kinase; TMTK, 90.5 0.2 7E-06 46.2 4.2 26 182-207 4-29 (184)
485 1z2a_A RAS-related protein RAB 90.4 0.15 5.2E-06 45.8 3.3 23 182-204 6-28 (168)
486 2pjz_A Hypothetical protein ST 90.4 0.13 4.4E-06 50.7 2.9 24 181-204 30-53 (263)
487 4gzl_A RAS-related C3 botulinu 90.3 0.17 5.7E-06 47.6 3.5 27 178-204 27-53 (204)
488 3v9p_A DTMP kinase, thymidylat 90.3 0.33 1.1E-05 46.5 5.6 27 181-207 25-51 (227)
489 1cp2_A CP2, nitrogenase iron p 90.3 0.19 6.5E-06 49.6 4.1 39 182-222 2-40 (269)
490 3hjn_A DTMP kinase, thymidylat 90.1 0.47 1.6E-05 44.3 6.5 26 183-208 2-27 (197)
491 1tq4_A IIGP1, interferon-induc 90.1 0.2 6.7E-06 52.7 4.2 25 180-204 68-92 (413)
492 3con_A GTPase NRAS; structural 90.0 0.17 5.8E-06 46.7 3.3 23 183-205 23-45 (190)
493 2wjg_A FEOB, ferrous iron tran 90.0 0.18 6E-06 46.5 3.4 23 182-204 8-30 (188)
494 3fvq_A Fe(3+) IONS import ATP- 89.9 0.18 6.2E-06 51.8 3.7 26 180-205 29-54 (359)
495 2vp4_A Deoxynucleoside kinase; 89.9 0.12 4.3E-06 49.7 2.3 25 180-204 19-43 (230)
496 2afh_E Nitrogenase iron protei 89.9 0.23 7.9E-06 49.6 4.4 40 181-222 2-41 (289)
497 3gmt_A Adenylate kinase; ssgci 89.9 0.2 6.8E-06 47.9 3.6 26 181-206 8-33 (230)
498 1nrj_B SR-beta, signal recogni 89.8 0.22 7.4E-06 47.2 4.0 27 179-205 10-36 (218)
499 1r8s_A ADP-ribosylation factor 89.8 0.2 6.7E-06 44.9 3.5 22 184-205 3-24 (164)
500 2bbs_A Cystic fibrosis transme 89.8 0.16 5.6E-06 50.6 3.2 26 180-205 63-88 (290)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.2e-48 Score=431.89 Aligned_cols=310 Identities=13% Similarity=0.135 Sum_probs=241.1
Q ss_pred cchHHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHH--HHhhccCCCeEEEEEEecCC--ChHHHHHHHHHh
Q 004895 163 NSRKKIFQDVIEALKDD---KLNIIGVCGMGGVGKTTLVKQIAK--QVMEDNVFDKVVMAEITKNP--DAQKIQGELASD 235 (724)
Q Consensus 163 ~gR~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~~~ 235 (724)
+||++++++|.++|... ..++|+|+||||+||||||+++|+ +.+.+.+|++++||++++.+ +..+++..|+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~ 210 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 210 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHH
Confidence 39999999999999733 679999999999999999999998 46677899999999999985 789999999999
Q ss_pred hCCCCC---C----CchhHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccc
Q 004895 236 LGMNFD---S----NDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD 308 (724)
Q Consensus 236 l~~~~~---~----~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 308 (724)
++.... . ..........+.+.+.+++|+||||||||+..++ .+ + ..+||+||||||++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~----~---------~~~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 211 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RW----A---------QELRLRCLVTTRDVE 276 (549)
T ss_dssp HTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HH----H---------HHTTCEEEEEESBGG
T ss_pred HhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cc----c---------ccCCCEEEEEcCCHH
Confidence 986521 1 1112334567777776434999999999998755 21 1 226899999999999
Q ss_pred hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHhcCCCHHHHHHHHHHHh
Q 004895 309 LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIWKDALNKLT 388 (724)
Q Consensus 309 v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~~~~l~ 388 (724)
++.........|++++|+++|+|+||.+.++....++.+++++++|+++|+|+||||+++|+.++.++ |+.+ +.+.
T Consensus 277 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~---w~~~-~~l~ 352 (549)
T 2a5y_B 277 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT---FEKM-AQLN 352 (549)
T ss_dssp GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS---HHHH-HHHH
T ss_pred HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch---HHHH-HHhH
Confidence 87432224467999999999999999999876544467788999999999999999999999998764 4333 3332
Q ss_pred cCccccccCCCcccchhhHhhhhhcHHHHHHHHH-----------hhccCCCCCcccHHHHHHHHhhccccccc--cccc
Q 004895 389 SSNLREIHGMDADVYSPIKLSYDFLDDEAKSLFL-----------LCGLHREGRPIHVHYLLRYVMGLRYDKGL--GLFR 455 (724)
Q Consensus 389 ~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~-----------~~s~fp~~~~i~~~~Li~~W~~~~~~~~~--g~i~ 455 (724)
...... ...++..++.+||+.||+++|.||+ |||+||+++.|+ +++|+ |+ ||+.
T Consensus 353 ~~l~~~---~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~------a~~~G~i~ 419 (549)
T 2a5y_B 353 NKLESR---GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWS------CVIPVDIC 419 (549)
T ss_dssp HHHHHH---CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHH------HHSCC---
T ss_pred HHhhcc---cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeee------eeccceec
Confidence 221111 2456899999999999999999999 999999999999 78999 88 8886
Q ss_pred cc---ccHHHHHHHHHHHHHHHHhhcccccC--CCCCcchhhHHHHHHHHHHhhhcc
Q 004895 456 NV---YTLEAARNRVDALIDNLKASCLLLDG--DAEDEAKLHDVIHVVAASIAEEKL 507 (724)
Q Consensus 456 ~~---~~~~~~~~~~~~~~~~L~~~~ll~~~--~~~~~~~mHdlv~d~a~~~~~~~~ 507 (724)
.. .+.+++. +++++|+++||++.. +...+|+|||+||+||++++.+++
T Consensus 420 ~~~~~~~~~~~~----~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 420 SNEEEQLDDEVA----DRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp ----CCCTHHHH----HHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred cCCCCCCHHHHH----HHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 42 2333332 278889999999854 234679999999999999988765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.2e-38 Score=358.54 Aligned_cols=284 Identities=17% Similarity=0.201 Sum_probs=222.8
Q ss_pred ccchHHHHHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCe-EEEEEEecCCChHHHHHHHHHhhCC-
Q 004895 162 FNSRKKIFQDVIEALKD-DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDK-VVMAEITKNPDAQKIQGELASDLGM- 238 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~l~~~i~~~l~~- 238 (724)
.+||++++++|.++|.+ +..++|+|+||||+||||||+++|++.+.+.+|+. ++|+++++.++...++..|++.++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i 209 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhc
Confidence 38999999999999874 56899999999999999999999998777778986 9999999999988888888775421
Q ss_pred --CC----CC-Cc---hhHHHHHHHHHHHh--cCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecc
Q 004895 239 --NF----DS-ND---LIYHRAKQLCQRLK--KEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRS 306 (724)
Q Consensus 239 --~~----~~-~~---~~~~~~~~l~~~l~--~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~ 306 (724)
.. +. .. ........+.+.+. .++|+||||||||+...|+.+ . +||+||||||+
T Consensus 210 ~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f--------------~-pGSRILVTTRd 274 (1221)
T 1vt4_I 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF--------------N-LSCKILLTTRF 274 (1221)
T ss_dssp CSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH--------------H-SSCCEEEECSC
T ss_pred CcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh--------------C-CCeEEEEeccC
Confidence 11 10 01 11233445555541 368999999999998888764 1 48999999999
Q ss_pred cchhhhhcCCCceEecC------CCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHhcCC--CHH
Q 004895 307 RDLLCIDMNSQKMFWID------ALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNK--SPA 378 (724)
Q Consensus 307 ~~v~~~~~~~~~~~~l~------~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~--~~~ 378 (724)
+.++.. +.....|.++ +|+++|||+||.+..+.. ..++..+| |+|+||||+++|+.|+.+ +..
T Consensus 275 ~~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~e 345 (1221)
T 1vt4_I 275 KQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWD 345 (1221)
T ss_dssp SHHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHH
T ss_pred hHHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHH
Confidence 988632 2222356666 999999999999985432 23444444 999999999999999966 677
Q ss_pred HHHHHHHHHhcCccccccCCCcccchhhHhhhhhcHHHH-HHHHHhhccCCCCCcccHHHHHHHHhhccccccccccccc
Q 004895 379 IWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDDEA-KSLFLLCGLHREGRPIHVHYLLRYVMGLRYDKGLGLFRNV 457 (724)
Q Consensus 379 ~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cf~~~s~fp~~~~i~~~~Li~~W~~~~~~~~~g~i~~~ 457 (724)
+|+.. ....+..+|.+||+.||++. |+||++||+||+++.|+.+.++.+|+ ++|.
T Consensus 346 eW~~~--------------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~------aeGe---- 401 (1221)
T 1vt4_I 346 NWKHV--------------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF------DVIK---- 401 (1221)
T ss_dssp HHHHC--------------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHC------SSCS----
T ss_pred HHhcC--------------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhc------CCCH----
Confidence 88642 13568999999999999999 99999999999999999999999999 7761
Q ss_pred ccHHHHHHHHHHHHHHHHhhcccccCCCCCcchhhHHHHHHHH
Q 004895 458 YTLEAARNRVDALIDNLKASCLLLDGDAEDEAKLHDVIHVVAA 500 (724)
Q Consensus 458 ~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~mHdlv~d~a~ 500 (724)
++ ..+++++|+++||++..+....|+|||++++++.
T Consensus 402 ---ed----Ae~~L~eLvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 402 ---SD----VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp ---HH----HHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred ---HH----HHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 12 4457888999999987555678999999999653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.7e-38 Score=390.79 Aligned_cols=315 Identities=19% Similarity=0.272 Sum_probs=246.5
Q ss_pred CcccccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhh-cc-CCCeEEEEEEecCCC--hHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVME-DN-VFDKVVMAEITKNPD--AQKIQ 229 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~-~F~~~~wv~vs~~~~--~~~l~ 229 (724)
|.....|+||++++++|.+.|. ++..++|+|+||||+||||||+++|++.+. .. +|+.++|+++++..+ ....+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 199 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKL 199 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHH
Confidence 5556779999999999999985 467899999999999999999999998643 23 557789999998654 33446
Q ss_pred HHHHHhhCCCCC----CCchhHHHHHHHHHHHhc-CCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEe
Q 004895 230 GELASDLGMNFD----SNDLIYHRAKQLCQRLKK-EKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTS 304 (724)
Q Consensus 230 ~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTt 304 (724)
..++..++.... ...........+...+.. ++|+||||||||+..+|..+ .+||+|||||
T Consensus 200 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~---------------~~~~~ilvTt 264 (1249)
T 3sfz_A 200 QNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF---------------DNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT---------------CSSCEEEEEE
T ss_pred HHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh---------------cCCCEEEEEc
Confidence 667777764321 112234455555555542 24999999999998776653 3588999999
Q ss_pred cccchhhhhcCCCceEecCC-CCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHhcCCCHHHHHHH
Q 004895 305 RSRDLLCIDMNSQKMFWIDA-LSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIWKDA 383 (724)
Q Consensus 305 R~~~v~~~~~~~~~~~~l~~-L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w~~~ 383 (724)
|++.++.........+.+++ |+++|+++||...++.. .+.+++++++|+++|+|+||||+++|+.|+.+. ..|+..
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~ 341 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYY 341 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHH
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHH
Confidence 99998644456667899996 99999999999988543 345577899999999999999999999999665 579999
Q ss_pred HHHHhcCcccccc----CCCcccchhhHhhhhhcHHHHHHHHHhhccCCCCCcccHHHHHHHHhhccccccccccccccc
Q 004895 384 LNKLTSSNLREIH----GMDADVYSPIKLSYDFLDDEAKSLFLLCGLHREGRPIHVHYLLRYVMGLRYDKGLGLFRNVYT 459 (724)
Q Consensus 384 ~~~l~~~~~~~~~----~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~~~~~~~~~g~i~~~~~ 459 (724)
++.+.......+. .....+..+|.+||+.||+++|.||+|||+||+++.|+.+.++.+|. +++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~------~~~------- 408 (1249)
T 3sfz_A 342 LRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWD------LET------- 408 (1249)
T ss_dssp HHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHT------CCH-------
T ss_pred HHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhC------CCH-------
Confidence 9888765533321 11246899999999999999999999999999999999999999998 442
Q ss_pred HHHHHHHHHHHHHHHHhhcccccCC--CCCcchhhHHHHHHHHHHhhhc
Q 004895 460 LEAARNRVDALIDNLKASCLLLDGD--AEDEAKLHDVIHVVAASIAEEK 506 (724)
Q Consensus 460 ~~~~~~~~~~~~~~L~~~~ll~~~~--~~~~~~mHdlv~d~a~~~~~~~ 506 (724)
++ +.+++++|+++||++... ...+|+|||+||+|++..+.++
T Consensus 409 -~~----~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 -EE----VEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -HH----HHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -HH----HHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 23 345678888899997542 2336999999999999997765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=332.25 Aligned_cols=310 Identities=19% Similarity=0.303 Sum_probs=232.8
Q ss_pred CcccccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhh-ccCC-CeEEEEEEecCCChHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVME-DNVF-DKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~vs~~~~~~~l~~~ 231 (724)
|.....|+||+.++++|.++|. .+..++|+|+||||+||||||.+++++... ..+| +.++|+++++. +...++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 3345679999999999999987 356789999999999999999999987654 5668 58999999876 33344444
Q ss_pred H---HHhhCCC----CCCCchhHHHHHHHHHHHhcC-CcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEE
Q 004895 232 L---ASDLGMN----FDSNDLIYHRAKQLCQRLKKE-KRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILT 303 (724)
Q Consensus 232 i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~~-kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 303 (724)
+ +..++.. .............+...+... +++||||||+|+...++.+ ..+++||||
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l---------------~~~~~ilvT 263 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF---------------DSQCQILLT 263 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT---------------CSSCEEEEE
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh---------------cCCCeEEEE
Confidence 3 4455421 111222344556666666542 6899999999987655432 357899999
Q ss_pred ecccchhhhhcCCCceEec---CCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHhcCCCHHHH
Q 004895 304 SRSRDLLCIDMNSQKMFWI---DALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANALKNKSPAIW 380 (724)
Q Consensus 304 tR~~~v~~~~~~~~~~~~l---~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l~~~~~~~w 380 (724)
||+..++.... ...+++ ++|+.+|+++||...++.. .+...+.+++|+++|+|+||||.++|+.++.+. ..|
T Consensus 264 sR~~~~~~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w 338 (591)
T 1z6t_A 264 TRDKSVTDSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRW 338 (591)
T ss_dssp ESCGGGGTTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCH
T ss_pred CCCcHHHHhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhH
Confidence 99998753212 234444 5899999999999998742 223356889999999999999999999998653 469
Q ss_pred HHHHHHHhcCccccc----cCCCcccchhhHhhhhhcHHHHHHHHHhhccCCCCCcccHHHHHHHHhhcccccccccccc
Q 004895 381 KDALNKLTSSNLREI----HGMDADVYSPIKLSYDFLDDEAKSLFLLCGLHREGRPIHVHYLLRYVMGLRYDKGLGLFRN 456 (724)
Q Consensus 381 ~~~~~~l~~~~~~~~----~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~~~~i~~~~Li~~W~~~~~~~~~g~i~~ 456 (724)
..+++.+.......+ ......+..++..||+.||++.|.||++||+||+++.|+.+.++.+|. ++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~------~~----- 407 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWD------ME----- 407 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHT------CC-----
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhc------cC-----
Confidence 888888775542221 112357889999999999999999999999999999999999999997 32
Q ss_pred cccHHHHHHHHHHHHHHHHhhcccccC--CCCCcchhhHHHHHHHHHHhh
Q 004895 457 VYTLEAARNRVDALIDNLKASCLLLDG--DAEDEAKLHDVIHVVAASIAE 504 (724)
Q Consensus 457 ~~~~~~~~~~~~~~~~~L~~~~ll~~~--~~~~~~~mHdlv~d~a~~~~~ 504 (724)
.++ +.++++.|+++||++.. +....|+||+++|++++....
T Consensus 408 ---~~~----~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 408 ---TEE----VEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp ---HHH----HHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred ---HHH----HHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 122 34578888899999743 233479999999999998843
No 5
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.68 E-value=4.3e-16 Score=159.79 Aligned_cols=105 Identities=26% Similarity=0.368 Sum_probs=50.8
Q ss_pred CCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCc--ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEc
Q 004895 573 GTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDI--AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLD 649 (724)
Q Consensus 573 ~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~ 649 (724)
.+++|+.|++++|.+..+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++.+|.. +..+++|++|+
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 44445555555555555554444555555555555554441 2344555555555555555544433 34445555555
Q ss_pred cCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 650 LSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 650 l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
+++ +.+..+|+..+..+++|++|++++|
T Consensus 155 L~~-N~l~~l~~~~~~~l~~L~~L~L~~N 182 (290)
T 1p9a_G 155 LAN-NNLTELPAGLLNGLENLDTLLLQEN 182 (290)
T ss_dssp CTT-SCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CCC-CcCCccCHHHhcCcCCCCEEECCCC
Confidence 554 2344444444444555555555444
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.68 E-value=2.9e-16 Score=164.14 Aligned_cols=182 Identities=21% Similarity=0.301 Sum_probs=116.5
Q ss_pred ccCceEEeccCCCcccCCCcc-cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCC-CCCccccC-------
Q 004895 526 QKGPIAISLPYRDIQELPERL-ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFS-PLPSSLGR------- 596 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~------- 596 (724)
..++++|++++|.+..+|... .+++|+.|.+.. +....+|.. +.++++|++|++++|.+. .+|..++.
T Consensus 103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~--n~l~~lp~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~ 179 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLAR--NPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEH 179 (328)
T ss_dssp GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEES--CCCCCCCGG-GGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred CCCCCEEECCCCCccchhHHHhccCCCCEEECCC--CccccCcHH-HhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence 356777777777776666533 567777777732 233345443 666777777777775544 56665543
Q ss_pred --CCCCcEEEcCCcccCC-cccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEE
Q 004895 597 --LINLQTLCLDGWRLED-IAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEEL 673 (724)
Q Consensus 597 --l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L 673 (724)
+.+|++|+|++|.++. |..++.+++|++|++++|.++.+|..+..+++|++|++++|+....+|. .++.+++|++|
T Consensus 180 ~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L 258 (328)
T 4fcg_A 180 QGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP-IFGGRAPLKRL 258 (328)
T ss_dssp EESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC-CTTCCCCCCEE
T ss_pred ccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH-HhcCCCCCCEE
Confidence 7777777777777666 4567777777777777777777777777777777777777655554443 46777777777
Q ss_pred EccCCCCccccccCCccchHHhhcCCCCCcEEEeeccc-cccccccc
Q 004895 674 YMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRD-AEMLRRIW 719 (724)
Q Consensus 674 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~-~~~lp~~~ 719 (724)
++++|.. .+..+ ..+.++++|+.|++++|. ...+|..+
T Consensus 259 ~L~~n~~-----~~~~p---~~~~~l~~L~~L~L~~n~~~~~iP~~l 297 (328)
T 4fcg_A 259 ILKDCSN-----LLTLP---LDIHRLTQLEKLDLRGCVNLSRLPSLI 297 (328)
T ss_dssp ECTTCTT-----CCBCC---TTGGGCTTCCEEECTTCTTCCCCCGGG
T ss_pred ECCCCCc-----hhhcc---hhhhcCCCCCEEeCCCCCchhhccHHH
Confidence 7776532 22222 235567778888888765 34455443
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=5e-16 Score=159.18 Aligned_cols=150 Identities=23% Similarity=0.333 Sum_probs=84.8
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCc-CCCC-CccccCCCCCc
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIR-FSPL-PSSLGRLINLQ 601 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l-p~~i~~l~~L~ 601 (724)
+.++++|++++|.+..++. ...+++|+.|.+ ..+....+....|.++++|+.|++++|. +..+ |..+..+.+|+
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWL--HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEEC--CCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 4456666666666655542 224566666666 2223334444445566666666666665 5544 44556666666
Q ss_pred EEEcCCcccCC--cccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 602 TLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 602 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
+|++++|.++. +..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|
T Consensus 109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n 187 (285)
T 1ozn_A 109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN 187 (285)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCC
Confidence 66666666555 23455666666666666666655443 55566666666665 3445555544555666666666554
No 8
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.67 E-value=2.5e-15 Score=158.82 Aligned_cols=292 Identities=15% Similarity=0.124 Sum_probs=177.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC------ChHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP------DAQKIQ 229 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~------~~~~l~ 229 (724)
+.....|+||+++++.|.+++..+ +++.|+|++|+|||||++++++.. + ++|+++.... +...+.
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~~~~~ 78 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITREELI 78 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCHHHHH
T ss_pred CCChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCHHHHH
Confidence 344567999999999999988654 799999999999999999998764 1 6788776542 566677
Q ss_pred HHHHHhhCC-----------------CCCC-CchhHHHHHHHHHHHhcCCcEEEEEccccccccc---------cccccc
Q 004895 230 GELASDLGM-----------------NFDS-NDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLEL---------DKIGIP 282 (724)
Q Consensus 230 ~~i~~~l~~-----------------~~~~-~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~---------~~l~~~ 282 (724)
..+.+.+.. ..+. ..........+.......++++|||||++....+ ..+...
T Consensus 79 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~ 158 (350)
T 2qen_A 79 KELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYA 158 (350)
T ss_dssp HHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHH
Confidence 777665542 0000 0112223333333333223899999999775431 112111
Q ss_pred cCCCCcCCCCCCCCCcEEEEEecccchhhh----------hc-CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHH
Q 004895 283 YGDVDEKDKNDDPRRCTIILTSRSRDLLCI----------DM-NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLA 351 (724)
Q Consensus 283 ~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~----------~~-~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~ 351 (724)
. . ...+.++|+|++....... .. .....+++.+|+.+|+.+++.+.+....... -.+.+
T Consensus 159 ~-~--------~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~-~~~~~ 228 (350)
T 2qen_A 159 Y-D--------SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV-PENEI 228 (350)
T ss_dssp H-H--------HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHH
T ss_pred H-H--------hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHH
Confidence 1 1 1246789999876532110 01 1124799999999999999988653221111 24678
Q ss_pred HHHHHHhCCchhHHHHHHHHhcC-CCHHHHH-HHHHHHhcCccccccCCCcccchhhHhhhhhc---HHHHHHHHHhhcc
Q 004895 352 EEIVGKCGGLPVALSTVANALKN-KSPAIWK-DALNKLTSSNLREIHGMDADVYSPIKLSYDFL---DDEAKSLFLLCGL 426 (724)
Q Consensus 352 ~~I~~~c~GlPLai~~~~~~l~~-~~~~~w~-~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cf~~~s~ 426 (724)
.+|++.|+|+|+++..++..+.. .+...+. ...+. +...+...+..+ ++..+..+..+|.
T Consensus 229 ~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~l~~l~~~~~~~~~~l~~la~ 293 (350)
T 2qen_A 229 EEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV---------------AKGLIMGELEELRRRSPRYVDILRAIAL 293 (350)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHCHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH---------------HHHHHHHHHHHHHhCChhHHHHHHHHHh
Confidence 89999999999999998876432 2222221 11111 111222223333 6888999999987
Q ss_pred CCCCCcccHHHHHHHHhhcccccccccccccccHHHHHHHHHHHHHHHHhhcccccCCCCCcch-hhHHHHHHHH
Q 004895 427 HREGRPIHVHYLLRYVMGLRYDKGLGLFRNVYTLEAARNRVDALIDNLKASCLLLDGDAEDEAK-LHDVIHVVAA 500 (724)
Q Consensus 427 fp~~~~i~~~~Li~~W~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~-mHdlv~d~a~ 500 (724)
+ ..+...+....- .+.| + .+. ..+..+++.|.+.+++...+ +.|. .|++++++.+
T Consensus 294 ---g-~~~~~~l~~~~~-----~~~~---~-~~~----~~~~~~l~~L~~~gli~~~~--~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 294 ---G-YNRWSLIRDYLA-----VKGT---K-IPE----PRLYALLENLKKMNWIVEED--NTYKIADPVVATVLR 349 (350)
T ss_dssp ---T-CCSHHHHHHHHH-----HTTC---C-CCH----HHHHHHHHHHHHTTSEEEET--TEEEESSHHHHHHHT
T ss_pred ---C-CCCHHHHHHHHH-----HHhC---C-CCH----HHHHHHHHHHHhCCCEEecC--CEEEEecHHHHHHHc
Confidence 2 345566655432 0111 0 112 22345677888899986542 3455 4889888754
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=8.8e-16 Score=155.94 Aligned_cols=178 Identities=24% Similarity=0.353 Sum_probs=140.8
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 602 (724)
+.++++|++++|.+..++. ...+++|+.|.+ +.+....++...|.++++|++|++++|.+..+|. .+..+.+|++
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 113 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL--NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE 113 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEEC--CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEEC--CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE
Confidence 5678899999998887764 337889999998 4445567777778889999999999999987765 4688899999
Q ss_pred EEcCCcccCCc--ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 603 LCLDGWRLEDI--AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 603 L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
|++++|.++.. ..++.+++|++|++++|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|.
T Consensus 114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCCc
Confidence 99999988873 4578899999999999999888776 78899999999988 46777887778889999999998864
Q ss_pred CccccccCCccchHHhhcCCCCCcEEEeecccccc
Q 004895 680 SQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 680 ~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~ 714 (724)
. .+..+ ..+..+++|+.|++++|.+..
T Consensus 193 l-----~~~~~---~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 193 L-----KRVPE---GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp C-----SCCCT---TTTTTCTTCCEEECCSSCBCC
T ss_pred C-----CcCCH---HHhccccCCCEEEecCCCeeC
Confidence 3 21111 235677889999999987643
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=1e-15 Score=155.47 Aligned_cols=182 Identities=21% Similarity=0.335 Sum_probs=147.0
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc-ccCCCCCcEEEc
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS-LGRLINLQTLCL 605 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L 605 (724)
...+.+.++++.+..+|.... ++++.|.+ ..+....++...|.++++|++|++++|.+..+|.. +..+++|++|++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~-~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP-ADTKKLDL--QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC-TTCSEEEC--CSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCccCCCCC-CCCCEEEC--cCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 356788898888888886443 68999999 44455667777788999999999999999988765 478999999999
Q ss_pred CCcccCCc--ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCcc
Q 004895 606 DGWRLEDI--AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQW 682 (724)
Q Consensus 606 ~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~ 682 (724)
++|.++.+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.+..+++..++.+++|++|++++|..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~l-- 169 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNNQL-- 169 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC--
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCCcC--
Confidence 99998883 4678999999999999999988654 78999999999999 467888887789999999999998743
Q ss_pred ccccCCccchHHhhcCCCCCcEEEeecccccccccccc
Q 004895 683 DKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIWS 720 (724)
Q Consensus 683 ~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~~ 720 (724)
.+..+ ..+.++++|+.|+++.|.++.+|...+
T Consensus 170 ---~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 170 ---KRVPE---GAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp ---SCCCT---TTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred ---cEeCh---hHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 21111 235678899999999999988887543
No 11
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.67 E-value=1.1e-15 Score=156.77 Aligned_cols=173 Identities=24% Similarity=0.308 Sum_probs=148.4
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
..+++.+++.+|.+..++....+++|+.|.+ +.+....++. +.++++|+.|++++|.+..+|. ++.+.+|++|++
T Consensus 45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L--~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFL--NGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEEC--CSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccChhHhcCCCCCEEEc--cCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 4689999999999998887778999999999 3344455554 8899999999999999998765 899999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccc
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKV 685 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 685 (724)
++|.++.++.+..+++|++|++++|.++.+ ..+..+++|++|++++| .+..+++ +..+++|++|++++|..
T Consensus 120 ~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~L~~N~i----- 190 (291)
T 1h6t_A 120 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHI----- 190 (291)
T ss_dssp TTSCCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC-----
T ss_pred CCCcCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCC-ccccchh--hcCCCccCEEECCCCcC-----
Confidence 999999988899999999999999999988 56999999999999995 6777766 89999999999999742
Q ss_pred cCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 686 EGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 686 ~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
++ +..+.++++|+.|++++|.+...|.
T Consensus 191 ~~-----l~~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 191 SD-----LRALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp CB-----CGGGTTCTTCSEEEEEEEEEECCCE
T ss_pred CC-----ChhhccCCCCCEEECcCCcccCCcc
Confidence 21 2357889999999999998866554
No 12
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.67 E-value=1.6e-15 Score=157.08 Aligned_cols=175 Identities=21% Similarity=0.307 Sum_probs=121.4
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
..++++|++++|.+..++....+++|+.|.+. .+....++ .+..+++|+.|++++|.+..+|. +..+++|++|++
T Consensus 62 l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~--~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAPLKNLTKITELELS--GNPLKNVS--AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYL 136 (308)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCCSCCEEECC--SCCCSCCG--GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCCChhHccCCCCCEEEcc--CCcCCCch--hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEEC
Confidence 45677777777777666655567777777773 22233333 36677777777777777777654 777777777777
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccc
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKV 685 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 685 (724)
++|.++..+.++.+++|++|++++|.++.+|. +..+++|++|++++| .+..+++ +..+++|++|++++|..
T Consensus 137 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l----- 207 (308)
T 1h6u_A 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQI----- 207 (308)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSCC-----
T ss_pred CCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCCcc-----
Confidence 77777775557777778888887777777766 777777888888773 4566654 67778888888777632
Q ss_pred cCCccchHHhhcCCCCCcEEEeeccccccccccc
Q 004895 686 EGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 686 ~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~ 719 (724)
.+ +..+..+++|+.|++++|.+...|..+
T Consensus 208 ~~-----~~~l~~l~~L~~L~l~~N~i~~~~~~~ 236 (308)
T 1h6u_A 208 SD-----VSPLANTSNLFIVTLTNQTITNQPVFY 236 (308)
T ss_dssp CB-----CGGGTTCTTCCEEEEEEEEEECCCEEC
T ss_pred Cc-----cccccCCCCCCEEEccCCeeecCCeee
Confidence 21 113677888889999888887766543
No 13
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=1.4e-15 Score=152.63 Aligned_cols=177 Identities=22% Similarity=0.327 Sum_probs=141.8
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcEEEc
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQTLCL 605 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L 605 (724)
...++++++++.+..+|.... ++++.|.+ ..+....++...|.++++|++|++++|.+..++ ..+..+.+|++|+|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDL--QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEEC--TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEc--cCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 355678888888888886554 68999988 445556667777889999999999999998664 45788999999999
Q ss_pred CCcccCC-c-ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCcc
Q 004895 606 DGWRLED-I-AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQW 682 (724)
Q Consensus 606 ~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~ 682 (724)
++|.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.+..+++..++.+++|++|++++|..
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l-- 167 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTNQL-- 167 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC--
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCCcC--
Confidence 9999888 3 4678999999999999999988776 58899999999998 577888887788999999999998743
Q ss_pred ccccCCccchHHhhcCCCCCcEEEeeccccccc
Q 004895 683 DKVEGGSNASLAELKGLSKLTTLEIDVRDAEML 715 (724)
Q Consensus 683 ~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~l 715 (724)
.+..+ ..+.++++|+.|++++|.+..-
T Consensus 168 ---~~~~~---~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 168 ---QSVPH---GAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp ---SCCCT---TTTTTCTTCCEEECCSCCBCTT
T ss_pred ---CccCH---HHHhCCCCCCEEEeeCCceeCC
Confidence 22112 3456778899999999987553
No 14
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.66 E-value=6.4e-16 Score=161.55 Aligned_cols=183 Identities=21% Similarity=0.296 Sum_probs=149.7
Q ss_pred ccCceEEeccCCCcccCCCcc-cCCCccEEEEecccccccccchhh--------hcCCCCceEEEcCCCcCCCCCccccC
Q 004895 526 QKGPIAISLPYRDIQELPERL-ECPQLKLFLLFAKYDSTLQISDHF--------FEGTEELKVLDFTGIRFSPLPSSLGR 596 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~--------~~~l~~L~~L~l~~~~~~~lp~~i~~ 596 (724)
..++++|++++|.+..+|... .+++|+.|.+. .+.....+|..+ |.++++|++|++++|.+..+|..+++
T Consensus 126 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~-~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~ 204 (328)
T 4fcg_A 126 FAGLETLTLARNPLRALPASIASLNRLRELSIR-ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204 (328)
T ss_dssp GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE-EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGG
T ss_pred cCCCCEEECCCCccccCcHHHhcCcCCCEEECC-CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcC
Confidence 578999999999999888654 78999999994 333444455433 44699999999999999999999999
Q ss_pred CCCCcEEEcCCcccCC-cccccCCCCCcEEEccCCcCc-ccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEE
Q 004895 597 LINLQTLCLDGWRLED-IAIVGQLKKLEILSLRGAEIK-QLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELY 674 (724)
Q Consensus 597 l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~ 674 (724)
+.+|++|+|++|.++. |+.++.+++|++|++++|.+. .+|..+..+++|++|++++|+.+..+|.. ++.+++|++|+
T Consensus 205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~ 283 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLD 283 (328)
T ss_dssp CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEEE
T ss_pred CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEEe
Confidence 9999999999999988 678999999999999998655 78889999999999999998877777654 89999999999
Q ss_pred ccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccccccc
Q 004895 675 MGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRI 718 (724)
Q Consensus 675 l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~ 718 (724)
+++|. ..+..| ..+.+|++|+.+.+..+.+..++..
T Consensus 284 L~~n~-----~~~~iP---~~l~~L~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 284 LRGCV-----NLSRLP---SLIAQLPANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp CTTCT-----TCCCCC---GGGGGSCTTCEEECCGGGSCC----
T ss_pred CCCCC-----chhhcc---HHHhhccCceEEeCCHHHHHHHhhh
Confidence 99974 333444 3456778899999998877666644
No 15
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.65 E-value=6.5e-15 Score=155.98 Aligned_cols=293 Identities=14% Similarity=0.133 Sum_probs=171.0
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-----CChHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-----PDAQKIQGE 231 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~l~~~ 231 (724)
.....|+||+++++.|.+ +.. +++.|+|++|+|||||++.+++.... ..+|+++... .+...+...
T Consensus 10 ~~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 2fna_A 10 DNRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLE 80 (357)
T ss_dssp CSGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHH
T ss_pred CCHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHH
Confidence 345678999999999999 765 69999999999999999999987642 2678887653 344555555
Q ss_pred HHHhhC--------------C----CCCCC--ch-----hHHHHHHHHHHHhc-C-CcEEEEEcccccccc-----cccc
Q 004895 232 LASDLG--------------M----NFDSN--DL-----IYHRAKQLCQRLKK-E-KRVLIILDNIWTKLE-----LDKI 279 (724)
Q Consensus 232 i~~~l~--------------~----~~~~~--~~-----~~~~~~~l~~~l~~-~-kr~LlVlDdv~~~~~-----~~~l 279 (724)
+.+.+. . ..+.. .. .......+.+.+.. . ++++|||||++.... +..+
T Consensus 81 l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHH
Confidence 444331 0 00000 00 00112334444432 1 489999999976432 2111
Q ss_pred ccccCCCCcCCCCCCCCCcEEEEEecccchhhh----------hcC-CCceEecCCCCHHHHHHHHHHHhCCCCCCCCch
Q 004895 280 GIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCI----------DMN-SQKMFWIDALSEEEALQLFEKIVGESTKASDFR 348 (724)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~----------~~~-~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~ 348 (724)
...+.. ...+.++|+|++....... ..+ ....+.+.+|+.+|+.+++...+.......+
T Consensus 161 l~~~~~--------~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~-- 230 (357)
T 2fna_A 161 LAYAYD--------NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK-- 230 (357)
T ss_dssp HHHHHH--------HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--
T ss_pred HHHHHH--------cCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCC--
Confidence 111111 1246789999987542110 011 1257999999999999999886532111111
Q ss_pred hHHHHHHHHhCCchhHHHHHHHHhcC-CCHHHHHH-HHHHHhcCccccccCCCcccchhhHhhh---hhcHHHHHHHHHh
Q 004895 349 PLAEEIVGKCGGLPVALSTVANALKN-KSPAIWKD-ALNKLTSSNLREIHGMDADVYSPIKLSY---DFLDDEAKSLFLL 423 (724)
Q Consensus 349 ~~~~~I~~~c~GlPLai~~~~~~l~~-~~~~~w~~-~~~~l~~~~~~~~~~~~~~i~~~l~~sy---~~L~~~~k~cf~~ 423 (724)
+. ..|++.|+|+|+++..++..+.. .+...|.. +.+... ..+..-+...+ ..||+..+..+..
T Consensus 231 ~~-~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~l~~~~~~~l~~ 298 (357)
T 2fna_A 231 DY-EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-----------KLILKEFENFLHGREIARKRYLNIMRT 298 (357)
T ss_dssp CH-HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-----------HHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred cH-HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-----------HHHHHHHHHHhhccccccHHHHHHHHH
Confidence 12 78999999999999999887642 23333321 111100 00111111111 1789999999999
Q ss_pred hccCCCCCcccHHHHHHHHhhcccccccccccccccHHHHHHHHHHHHHHHHhhcccccCCCCCcch-hhHHHHHHH
Q 004895 424 CGLHREGRPIHVHYLLRYVMGLRYDKGLGLFRNVYTLEAARNRVDALIDNLKASCLLLDGDAEDEAK-LHDVIHVVA 499 (724)
Q Consensus 424 ~s~fp~~~~i~~~~Li~~W~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~-mHdlv~d~a 499 (724)
+|. + . +...+....- ...|. ..+. ..+..+++.|.+.+++...+ ..|+ .|++++++.
T Consensus 299 la~---g-~-~~~~l~~~~~-----~~~g~---~~~~----~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 299 LSK---C-G-KWSDVKRALE-----LEEGI---EISD----SEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp HTT---C-B-CHHHHHHHHH-----HHHCS---CCCH----HHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHHT
T ss_pred HHc---C-C-CHHHHHHHHH-----HhcCC---CCCH----HHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHhh
Confidence 998 2 2 4555543210 00110 0011 22445678888899987543 3466 589998864
No 16
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.64 E-value=3.6e-15 Score=154.40 Aligned_cols=173 Identities=18% Similarity=0.279 Sum_probs=149.0
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
..++++|++.++.+..++....+++|+.|.+ +.+....++. +.++++|+.|++++|.+..+| .++.+.+|++|++
T Consensus 40 l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L--~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLEL--KDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCTTGGGCTTCCEEEC--CSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCchhhhccCCCCEEEc--cCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 4689999999999988887678999999999 3344555555 889999999999999999886 6899999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccc
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKV 685 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 685 (724)
++|.++.++.+..+++|++|++++|.++.+|. +..+++|++|++++| .+..+++ +..+++|++|++++|..
T Consensus 115 ~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l----- 185 (308)
T 1h6u_A 115 TSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTP--LANLSKLTTLKADDNKI----- 185 (308)
T ss_dssp TTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC-----
T ss_pred CCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChh--hcCCCCCCEEECCCCcc-----
Confidence 99999997779999999999999999998877 899999999999995 6777765 89999999999998743
Q ss_pred cCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 686 EGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 686 ~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
.+ +..+..+++|+.|+++.|.+..++.
T Consensus 186 ~~-----~~~l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 186 SD-----ISPLASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp CC-----CGGGGGCTTCCEEECTTSCCCBCGG
T ss_pred Cc-----ChhhcCCCCCCEEEccCCccCcccc
Confidence 21 1227788999999999999988875
No 17
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.64 E-value=4.1e-15 Score=151.11 Aligned_cols=176 Identities=23% Similarity=0.290 Sum_probs=137.8
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcEEE
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQTLC 604 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~ 604 (724)
..+++.+.+.++.+..++....+++|+.|.+. .+....++ .+.++++|++|++++|.+..+|. .++.+.+|++|+
T Consensus 40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~--~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALG--GNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HTTCCEEECTTSCCCCCTTGGGCTTCCEEECT--TSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccceeeeeeCCCCcccccccccCCCCcEEECC--CCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 46888999998888888776788999999983 33333333 47788999999999999987765 468899999999
Q ss_pred cCCcccCCc--ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCc
Q 004895 605 LDGWRLEDI--AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQ 681 (724)
Q Consensus 605 L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 681 (724)
+++|.++.. ..++.+++|++|++++|.++.+|.. +..+++|++|++++| .+..+++..++.+++|++|++++|..
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l- 193 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQL- 193 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCC-
T ss_pred CCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcC-
Confidence 999998873 3478899999999999998888765 578999999999984 67778877778899999999988642
Q ss_pred cccccCCccchHHhhcCCCCCcEEEeecccccc
Q 004895 682 WDKVEGGSNASLAELKGLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 682 ~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~ 714 (724)
.+..+ ..+.++++|+.|+++.|.+..
T Consensus 194 ----~~~~~---~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 194 ----KSVPD---GVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp ----SCCCT---TTTTTCTTCCEEECCSSCBCC
T ss_pred ----CccCH---HHHhCCcCCCEEEccCCCccc
Confidence 22222 235677889999999887643
No 18
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=3.4e-15 Score=163.56 Aligned_cols=183 Identities=23% Similarity=0.280 Sum_probs=108.1
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 602 (724)
+.++++|++++|.+..++. ...+++|+.|.+ +.+....++...|.++++|+.|++++|.+..+|. .+..+.+|++
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQL--GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEEC--CCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 4566677777776655532 225666677666 3333444555556666666666666666665544 3556666666
Q ss_pred EEcCCcccCCc--c-------------------------cccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCC
Q 004895 603 LCLDGWRLEDI--A-------------------------IVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSS 655 (724)
Q Consensus 603 L~L~~~~l~~~--~-------------------------~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~ 655 (724)
|+|++|.++.+ . .+..+++|++|++++|.++.+| .+..+++|++|++++ +.
T Consensus 152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~-N~ 229 (452)
T 3zyi_A 152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSG-NH 229 (452)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTT-SC
T ss_pred EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcC-Cc
Confidence 66666665541 1 2445555555555555555554 255566666666666 34
Q ss_pred CcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccccccccc
Q 004895 656 LVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIWS 720 (724)
Q Consensus 656 l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~~ 720 (724)
+..+++..+..+++|+.|++++|.. .+. ....+.++++|+.|++++|.++.+|...+
T Consensus 230 l~~~~~~~~~~l~~L~~L~L~~n~l-----~~~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 286 (452)
T 3zyi_A 230 FPEIRPGSFHGLSSLKKLWVMNSQV-----SLI---ERNAFDGLASLVELNLAHNNLSSLPHDLF 286 (452)
T ss_dssp CSEECGGGGTTCTTCCEEECTTSCC-----CEE---CTTTTTTCTTCCEEECCSSCCSCCCTTSS
T ss_pred CcccCcccccCccCCCEEEeCCCcC-----ceE---CHHHhcCCCCCCEEECCCCcCCccChHHh
Confidence 5555555666667777777666532 111 12345667788888888888887776543
No 19
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.62 E-value=4.2e-15 Score=167.37 Aligned_cols=173 Identities=24% Similarity=0.309 Sum_probs=148.6
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
...++.|.+.+|.+..++....+++|+.|.+ +.+....+++ +..+++|+.|+|++|.+..+| .++.+.+|++|+|
T Consensus 42 L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L--s~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFL--NGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCTTGGGCTTCCEEEC--TTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCChHHccCCCCCEEEe--eCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 5688999999999998887778999999999 3444555555 789999999999999999877 6899999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccc
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKV 685 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 685 (724)
++|.+..++.+..|++|+.|+|++|.++.+ ..+..|++|++|+|++| .+..+++ +..|++|+.|++++|.+
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N~i----- 187 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDN-QISDIVP--LAGLTKLQNLYLSKNHI----- 187 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCC-----
T ss_pred cCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCC-cCCCchh--hccCCCCCEEECcCCCC-----
Confidence 999999988899999999999999999988 56999999999999995 5677766 89999999999999742
Q ss_pred cCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 686 EGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 686 ~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
.+ +..+..|++|+.|+++.|.+...|.
T Consensus 188 ~~-----l~~l~~l~~L~~L~L~~N~l~~~p~ 214 (605)
T 1m9s_A 188 SD-----LRALAGLKNLDVLELFSQECLNKPI 214 (605)
T ss_dssp CB-----CGGGTTCTTCSEEECCSEEEECCCC
T ss_pred CC-----ChHHccCCCCCEEEccCCcCcCCcc
Confidence 21 2457889999999999998876554
No 20
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=5.8e-15 Score=151.20 Aligned_cols=179 Identities=20% Similarity=0.202 Sum_probs=147.1
Q ss_pred ccCceEEeccCCCcccCC-Cc-ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELP-ER-LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~-~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~ 602 (724)
..++++|.+++|.+..++ .. ..+++|+.|.+. .+.....++...|.++++|+.|++++|.+..+ |..+..+.+|++
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS-DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCC-CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 468999999999887763 32 368999999993 22225666667789999999999999999976 667899999999
Q ss_pred EEcCCcccCC-c-ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 603 LCLDGWRLED-I-AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 603 L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
|++++|.++. + ..++.+++|++|++++|.++.+|.. +..+++|++|++++| .+...++..++.+++|+.|++++|.
T Consensus 134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCc
Confidence 9999999988 3 4589999999999999999988875 889999999999994 5777767778999999999999974
Q ss_pred CccccccCCccchHHhhcCCCCCcEEEeecccccc
Q 004895 680 SQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 680 ~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~ 714 (724)
. .+. ....+..+++|+.|++++|.+..
T Consensus 213 l-----~~~---~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 213 L-----SAL---PTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp C-----SCC---CHHHHTTCTTCCEEECCSSCEEC
T ss_pred C-----CcC---CHHHcccCcccCEEeccCCCccC
Confidence 3 221 12346788999999999998753
No 21
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.62 E-value=3.6e-15 Score=162.84 Aligned_cols=183 Identities=22% Similarity=0.286 Sum_probs=107.3
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 602 (724)
+.+++.|.+++|.+..++. ...+++|+.|.+ +.+....++...|.++++|+.|++++|.+..+|. .+..+.+|++
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQL--SRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEEC--CSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEEC--CCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 4566777777777766542 235677777777 3334445555566677777777777777766654 4666667777
Q ss_pred EEcCCcccCCc--ccc-------------------------cCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCC
Q 004895 603 LCLDGWRLEDI--AIV-------------------------GQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSS 655 (724)
Q Consensus 603 L~L~~~~l~~~--~~~-------------------------~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~ 655 (724)
|+|++|.++.+ ..+ .++++|++|++++|.++.+|. +..+++|++|++++| .
T Consensus 141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N-~ 218 (440)
T 3zyj_A 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGN-H 218 (440)
T ss_dssp EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTS-C
T ss_pred eeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCC-c
Confidence 77776665542 234 444555555555555555442 455555555555552 4
Q ss_pred CcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccccccccc
Q 004895 656 LVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIWS 720 (724)
Q Consensus 656 l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~~ 720 (724)
+..+++..+..+++|+.|++++|.... . ....+.++++|+.|+++.|.++.+|...+
T Consensus 219 l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~---~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 219 LSAIRPGSFQGLMHLQKLWMIQSQIQV-----I---ERNAFDNLQSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCE-----E---CTTSSTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cCccChhhhccCccCCEEECCCCceeE-----E---ChhhhcCCCCCCEEECCCCCCCccChhHh
Confidence 444544555566666666665543211 1 12345567788888888888877776543
No 22
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.62 E-value=3e-14 Score=154.15 Aligned_cols=298 Identities=15% Similarity=0.095 Sum_probs=178.1
Q ss_pred ccccchHHHHHHHHHHh-c----C--CCccEEEE--EcCCCCcHHHHHHHHHHHHhhc---cCCC-eEEEEEEecCCChH
Q 004895 160 NIFNSRKKIFQDVIEAL-K----D--DKLNIIGV--CGMGGVGKTTLVKQIAKQVMED---NVFD-KVVMAEITKNPDAQ 226 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L-~----~--~~~~vi~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~vs~~~~~~ 226 (724)
..|+||+++++.|.+++ . . ...+.+.| +|++|+||||||+.+++..... ..|+ .++|+++....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57899999999999888 4 2 34567777 9999999999999999887542 1233 36788877778889
Q ss_pred HHHHHHHHhhCCCCCCCc-hhHHHHHHHHHHHh-cCCcEEEEEcccccccc--------ccccccccCCCCcCCCCCCC-
Q 004895 227 KIQGELASDLGMNFDSND-LIYHRAKQLCQRLK-KEKRVLIILDNIWTKLE--------LDKIGIPYGDVDEKDKNDDP- 295 (724)
Q Consensus 227 ~l~~~i~~~l~~~~~~~~-~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~--------~~~l~~~~~~~~~~~~~~~~- 295 (724)
.++..++.+++...+... ........+...+. .+++++|||||++.... +..+...+... ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~-----~~~~~ 176 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEI-----PSRDG 176 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHS-----CCTTS
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhc-----ccCCC
Confidence 999999999976543211 12334455555553 35789999999987432 11111111110 0012
Q ss_pred -CCcEEEEEecccchhh--------hhcCCCceEecCCCCHHHHHHHHHHHhCCCC-CCCCchhHHHHHHHHhC------
Q 004895 296 -RRCTIILTSRSRDLLC--------IDMNSQKMFWIDALSEEEALQLFEKIVGEST-KASDFRPLAEEIVGKCG------ 359 (724)
Q Consensus 296 -~~s~ilvTtR~~~v~~--------~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c~------ 359 (724)
....+|+||+...... ........+.+++|+.++++++|...+.... ...--.+....|++.|+
T Consensus 177 ~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 256 (412)
T 1w5s_A 177 VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 256 (412)
T ss_dssp CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSC
T ss_pred CceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCC
Confidence 4456888887654320 0011123499999999999999987653111 11122567889999999
Q ss_pred CchhHHHHHHHHh-c-----CC---CHHHHHHHHHHHhcCccccccCCCcccchhhHhhhhhcHHHHHHHHHhhccCC--
Q 004895 360 GLPVALSTVANAL-K-----NK---SPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDDEAKSLFLLCGLHR-- 428 (724)
Q Consensus 360 GlPLai~~~~~~l-~-----~~---~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp-- 428 (724)
|.|..+..+.... . +. +...+..+...... ...+..++..||++.+.++..++.+.
T Consensus 257 G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~-------------~~~~~~~l~~l~~~~~~~l~aia~l~~~ 323 (412)
T 1w5s_A 257 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA-------------ASIQTHELEALSIHELIILRLIAEATLG 323 (412)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-------------------CCSSSSSCHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-------------cchHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 9997655544322 1 11 23334333332100 23345567889999999999888653
Q ss_pred CCCcccHHHHHHHHhhcccccccccccccccHHHHHHHHHHHHHHHHhhccccc
Q 004895 429 EGRPIHVHYLLRYVMGLRYDKGLGLFRNVYTLEAARNRVDALIDNLKASCLLLD 482 (724)
Q Consensus 429 ~~~~i~~~~Li~~W~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 482 (724)
.+..++...+...+...-+ ...|. . ..+ ...+..+++.|...+++..
T Consensus 324 ~~~~~~~~~~~~~~~~~~~-~~~~~-~-~~~----~~~~~~~l~~L~~~gli~~ 370 (412)
T 1w5s_A 324 GMEWINAGLLRQRYEDASL-TMYNV-K-PRG----YTQYHIYLKHLTSLGLVDA 370 (412)
T ss_dssp TCSSBCHHHHHHHHHHHHH-HHSCC-C-CCC----HHHHHHHHHHHHHTTSEEE
T ss_pred CCCCccHHHHHHHHHHHHH-hhcCC-C-CCC----HHHHHHHHHHHHhCCCEEe
Confidence 2235666665554420000 01111 0 001 1234456788888999854
No 23
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.60 E-value=8.5e-15 Score=150.09 Aligned_cols=182 Identities=21% Similarity=0.254 Sum_probs=152.6
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
..+++.+.+.++.+..+|.... ++++.|.+ +.+....++...|.++++|+.|++++|.+..+|.. +.+.+|++|++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L--~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~L 84 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP-KDTTILHL--SENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDL 84 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC-TTCCEEEC--TTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEEC
T ss_pred cCCccEEECCCCCCCcCCCCCC-CCCCEEEc--CCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEEC
Confidence 3578889999999998886553 78999999 44556667777799999999999999999987764 88999999999
Q ss_pred CCcccCC-cccccCCCCCcEEEccCCcCcccch-hhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccc
Q 004895 606 DGWRLED-IAIVGQLKKLEILSLRGAEIKQLPL-QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWD 683 (724)
Q Consensus 606 ~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~ 683 (724)
++|.++. |..+..+++|++|++++|.++.+|. .+..+++|++|++++ +.+..+|+..+..+++|+.|++++|....
T Consensus 85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 162 (290)
T 1p9a_G 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTE- 162 (290)
T ss_dssp CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTSCCSC-
T ss_pred CCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCCcCCc-
Confidence 9999988 5678899999999999999998875 589999999999999 57788888888999999999999975321
Q ss_pred cccCCccchHHhhcCCCCCcEEEeecccccccccccc
Q 004895 684 KVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIWS 720 (724)
Q Consensus 684 ~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~~ 720 (724)
..+ ..+.++++|+.|+++.|.++.+|..++
T Consensus 163 ----l~~---~~~~~l~~L~~L~L~~N~l~~ip~~~~ 192 (290)
T 1p9a_G 163 ----LPA---GLLNGLENLDTLLLQENSLYTIPKGFF 192 (290)
T ss_dssp ----CCT---TTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ----cCH---HHhcCcCCCCEEECCCCcCCccChhhc
Confidence 111 235678899999999999999987665
No 24
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.60 E-value=4.3e-15 Score=151.02 Aligned_cols=170 Identities=19% Similarity=0.279 Sum_probs=142.0
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc-ccCCCCCcEEE
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS-LGRLINLQTLC 604 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~ 604 (724)
..++++|++++|.+..++....+++|+.|.+ +.+....++...|.++++|++|++++|.+..+|.. ++.+.+|++|+
T Consensus 62 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 139 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHDISALKELTNLTYLIL--TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139 (272)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTCTTCCEEEC--TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCchhhcCCCCCCEEEC--CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEE
Confidence 5789999999999988876668999999999 44556677888889999999999999999977654 78999999999
Q ss_pred cCCcccCCc--ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCc
Q 004895 605 LDGWRLEDI--AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQ 681 (724)
Q Consensus 605 L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 681 (724)
+++|.++.+ ..++.+++|++|++++|.++.+|.. +..+++|++|++++| .+..+++..++.+++|++|++++|..
T Consensus 140 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~- 217 (272)
T 3rfs_A 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPW- 217 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCB-
T ss_pred CCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCc-
Confidence 999999883 3478999999999999999988766 689999999999994 67788888789999999999998732
Q ss_pred cccccCCccchHHhhcCCCCCcEEEeeccccc
Q 004895 682 WDKVEGGSNASLAELKGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 682 ~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~ 713 (724)
. ..+++|+.|++..|.+.
T Consensus 218 ----~----------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 218 ----D----------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp ----C----------CCTTTTHHHHHHHHHTG
T ss_pred ----c----------ccCcHHHHHHHHHHhCC
Confidence 1 12445666666666553
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.59 E-value=4.4e-15 Score=154.20 Aligned_cols=183 Identities=16% Similarity=0.159 Sum_probs=101.7
Q ss_pred cCceEEeccCCCcc---cCCCcc-cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCC-CCCccccCCCCCc
Q 004895 527 KGPIAISLPYRDIQ---ELPERL-ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFS-PLPSSLGRLINLQ 601 (724)
Q Consensus 527 ~~~~~l~l~~~~~~---~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~ 601 (724)
.++++|+++++.+. .+|... .+++|+.|.+.+.+.....+|. .|.++++|++|++++|.+. .+|..++++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 35666666666664 244332 5666666666211222223332 3556666666666666665 5566666666666
Q ss_pred EEEcCCcccCC--cccccCCCCCcEEEccCCcCc-ccchhhhcCC-CCCeEccCCCC----------------------C
Q 004895 602 TLCLDGWRLED--IAIVGQLKKLEILSLRGAEIK-QLPLQIGQLT-RLQLLDLSNCS----------------------S 655 (724)
Q Consensus 602 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~-~L~~L~l~~~~----------------------~ 655 (724)
+|++++|.++. |..++.+++|++|++++|.++ .+|..+..++ +|++|++++|. .
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~ 208 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNM 208 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSE
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCc
Confidence 66666666553 455666666666666666665 5566666665 66666666532 2
Q ss_pred CcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccc-cccccc
Q 004895 656 LVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAE-MLRRIW 719 (724)
Q Consensus 656 l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~-~lp~~~ 719 (724)
+...++..++.+++|++|++++|. +.+ .+..+..+++|+.|+++.|.+. .+|..+
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~-----l~~----~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l 264 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNS-----LAF----DLGKVGLSKNLNGLDLRNNRIYGTLPQGL 264 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSE-----ECC----BGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred ccCcCCHHHhcCCCCCEEECCCCc-----eee----ecCcccccCCCCEEECcCCcccCcCChHH
Confidence 222333334444555555554432 111 1233566778888888888876 455443
No 26
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=3.4e-15 Score=148.60 Aligned_cols=182 Identities=14% Similarity=0.207 Sum_probs=148.2
Q ss_pred ccCceEEeccCCCcccCCCc--ccCCCccEEEEeccccc-ccccchhhhcCCCCceEEEcCC-CcCCCCC-ccccCCCCC
Q 004895 526 QKGPIAISLPYRDIQELPER--LECPQLKLFLLFAKYDS-TLQISDHFFEGTEELKVLDFTG-IRFSPLP-SSLGRLINL 600 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L 600 (724)
+..+++|++++|.+..++.. ..+++|+.|.+ ..+. ...++...|.++++|+.|++++ |.+..+| ..+..+++|
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l--~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYV--SIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEE--ECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeC--CCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 46899999999999888752 37899999999 3333 5677777789999999999998 9999776 468899999
Q ss_pred cEEEcCCcccCCcccccCCCCCc---EEEccCC-cCcccchh-hhcCCCCC-eEccCCCCCCcccChHHhhCCCCCcEEE
Q 004895 601 QTLCLDGWRLEDIAIVGQLKKLE---ILSLRGA-EIKQLPLQ-IGQLTRLQ-LLDLSNCSSLVVIAPNVISKLSRLEELY 674 (724)
Q Consensus 601 ~~L~L~~~~l~~~~~~~~l~~L~---~L~l~~~-~i~~lp~~-i~~l~~L~-~L~l~~~~~l~~~~~~~i~~l~~L~~L~ 674 (724)
++|++++|.++.++.++.+.+|+ +|++++| .++.+|.. +..+++|+ +|++++ +.+..+|+..+.. ++|++|+
T Consensus 108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNG-TKLDAVY 185 (239)
T ss_dssp CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTT-CEEEEEE
T ss_pred CEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCC-CCCCEEE
Confidence 99999999998866688888888 9999999 99988775 88999999 999998 4677888765544 8999999
Q ss_pred ccCCC-CccccccCCccchHHhhcCC-CCCcEEEeeccccccccccc
Q 004895 675 MGDSF-SQWDKVEGGSNASLAELKGL-SKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 675 l~~~~-~~~~~~~~~~~~~l~~L~~L-~~L~~L~l~~n~~~~lp~~~ 719 (724)
+++|. ... .. ...+.++ ++|+.|+++.|.++.+|...
T Consensus 186 L~~n~~l~~-----i~---~~~~~~l~~~L~~L~l~~N~l~~l~~~~ 224 (239)
T 2xwt_C 186 LNKNKYLTV-----ID---KDAFGGVYSGPSLLDVSQTSVTALPSKG 224 (239)
T ss_dssp CTTCTTCCE-----EC---TTTTTTCSBCCSEEECTTCCCCCCCCTT
T ss_pred cCCCCCccc-----CC---HHHhhccccCCcEEECCCCccccCChhH
Confidence 99873 221 11 1235567 89999999999999988763
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.59 E-value=8.1e-15 Score=149.34 Aligned_cols=151 Identities=23% Similarity=0.293 Sum_probs=118.9
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~ 602 (724)
+..+++|++++|.+..++. ...+++|+.|.+ +.+....++...|.++++|+.|++++|.+..+| ..+..+.+|++
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEEC--CCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 5678999999998877763 336889999998 344556677777888999999999999988654 67888999999
Q ss_pred EEcCCcccCCc--ccccCCCCCcEEEccCCcCcc--cchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCc----EEE
Q 004895 603 LCLDGWRLEDI--AIVGQLKKLEILSLRGAEIKQ--LPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLE----ELY 674 (724)
Q Consensus 603 L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~----~L~ 674 (724)
|++++|.+... ..++.+++|++|++++|.++. +|..+..+++|++|++++ +.+..+++..+..+++|+ .|+
T Consensus 105 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~l~l~L~ 183 (276)
T 2z62_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLD 183 (276)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTTCCEEEE
T ss_pred EECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhhccccceeee
Confidence 99999988773 358889999999999998885 688899999999999998 456677665566555555 677
Q ss_pred ccCCC
Q 004895 675 MGDSF 679 (724)
Q Consensus 675 l~~~~ 679 (724)
+++|.
T Consensus 184 ls~n~ 188 (276)
T 2z62_A 184 LSLNP 188 (276)
T ss_dssp CCSSC
T ss_pred cCCCc
Confidence 76654
No 28
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.58 E-value=9.1e-15 Score=151.78 Aligned_cols=179 Identities=16% Similarity=0.207 Sum_probs=122.3
Q ss_pred ccCceEEeccCCCcc-cCCCc-ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCC-CCCccccCCC-CCc
Q 004895 526 QKGPIAISLPYRDIQ-ELPER-LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFS-PLPSSLGRLI-NLQ 601 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~-~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~-~L~ 601 (724)
..++++|++++|.+. .+|.. ..+++|+.|.+ +.+......+..|..+++|++|++++|.+. .+|..++.+. +|+
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L--s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF--SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC--CSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC--CCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 345666666666664 34432 25666666666 222233223334666777777777777776 6677777776 777
Q ss_pred EEEcCCcccCC--cccccCCCCCcEEEccCCcCc-ccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 602 TLCLDGWRLED--IAIVGQLKKLEILSLRGAEIK-QLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 602 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
+|++++|.++. |..++.+. |++|++++|.++ ..|..+..+++|++|++++| .+...++. +..+++|++|++++|
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGK-VGLSKNLNGLDLRNN 254 (313)
T ss_dssp EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGG-CCCCTTCCEEECCSS
T ss_pred EEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCc-ccccCCCCEEECcCC
Confidence 77777777664 45666665 788888887777 45667889999999999995 45555554 789999999999997
Q ss_pred CCccccccCCccchHHhhcCCCCCcEEEeeccccc-cccc
Q 004895 679 FSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAE-MLRR 717 (724)
Q Consensus 679 ~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~-~lp~ 717 (724)
. +.+..+ ..+.++++|+.|++++|.+. .+|.
T Consensus 255 ~-----l~~~~p---~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 255 R-----IYGTLP---QGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp C-----CEECCC---GGGGGCTTCCEEECCSSEEEEECCC
T ss_pred c-----ccCcCC---hHHhcCcCCCEEECcCCcccccCCC
Confidence 4 333333 34667889999999999986 4554
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.57 E-value=7e-15 Score=152.27 Aligned_cols=182 Identities=25% Similarity=0.253 Sum_probs=97.9
Q ss_pred ccCceEEeccCCCcccCCCc--ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccc---------
Q 004895 526 QKGPIAISLPYRDIQELPER--LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSL--------- 594 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i--------- 594 (724)
+.++++|.+++|.+..++.. ..+++|+.|.+..+...........+.++++|++|++++|.+..+|..+
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence 45677777777777766653 3667777777732221111110122334455555555555544444444
Q ss_pred ----------------cCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCcc--cchhhhcCCCCCeEccCCCC
Q 004895 595 ----------------GRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQ--LPLQIGQLTRLQLLDLSNCS 654 (724)
Q Consensus 595 ----------------~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~ 654 (724)
..+.+|++|++++|.+.. +..+..+++|++|++++|.++. +|..+..+++|++|++++|
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n- 185 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC- 185 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-
Confidence 444555555555554443 2335555555556665555543 4555566666666666663
Q ss_pred CCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccccc
Q 004895 655 SLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLR 716 (724)
Q Consensus 655 ~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp 716 (724)
.+..+++..++.+++|++|++++|.. .+..+ ..+..+++|+.|++++|.+...+
T Consensus 186 ~l~~~~~~~~~~l~~L~~L~L~~N~l-----~~~~~---~~~~~l~~L~~L~L~~N~l~~~~ 239 (306)
T 2z66_A 186 QLEQLSPTAFNSLSSLQVLNMSHNNF-----FSLDT---FPYKCLNSLQVLDYSLNHIMTSK 239 (306)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCC-----SBCCS---GGGTTCTTCCEEECTTSCCCBCS
T ss_pred CcCCcCHHHhcCCCCCCEEECCCCcc-----CccCh---hhccCcccCCEeECCCCCCcccC
Confidence 44555455566666666666666432 11111 23556777888888888776544
No 30
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.57 E-value=2.5e-14 Score=156.76 Aligned_cols=150 Identities=22% Similarity=0.231 Sum_probs=127.3
Q ss_pred CceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcEEEcC
Q 004895 528 GPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQTLCLD 606 (724)
Q Consensus 528 ~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~ 606 (724)
..+.+...+..+..+|... .++++.|.+ ..+....++...|.++++|+.|++++|.+..+ |..+..+.+|++|+|+
T Consensus 55 ~~~~v~c~~~~l~~iP~~~-~~~l~~L~L--~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGI-PSNTRYLNL--MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSCC-CTTCSEEEC--CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCCC-CCCccEEEC--cCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3456777777888888644 368999999 44556667777899999999999999999965 4789999999999999
Q ss_pred CcccCC-c-ccccCCCCCcEEEccCCcCcccch-hhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCC
Q 004895 607 GWRLED-I-AIVGQLKKLEILSLRGAEIKQLPL-QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFS 680 (724)
Q Consensus 607 ~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 680 (724)
+|.++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..+++..+..+++|++|++++|..
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 208 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI 208 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc
Confidence 999988 3 458999999999999999998876 5889999999999998888888888889999999999988753
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=156.52 Aligned_cols=149 Identities=23% Similarity=0.300 Sum_probs=127.4
Q ss_pred ceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcEEEcCC
Q 004895 529 PIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQTLCLDG 607 (724)
Q Consensus 529 ~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 607 (724)
.+.+...+..+..+|.... ++++.|.+ ..+....++...|.++++|+.|++++|.+..++ ..+..+.+|++|+|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L--~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNL--HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEEC--CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEc--cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4567777778888886543 78999999 445566677778999999999999999999764 6789999999999999
Q ss_pred cccCCc--ccccCCCCCcEEEccCCcCcccch-hhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCC
Q 004895 608 WRLEDI--AIVGQLKKLEILSLRGAEIKQLPL-QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFS 680 (724)
Q Consensus 608 ~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 680 (724)
|.++.+ ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+.+..+++..+..+++|++|++++|..
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l 197 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL 197 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcC
Confidence 999883 469999999999999999998876 5889999999999998888888887889999999999988753
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.57 E-value=7.5e-15 Score=155.35 Aligned_cols=190 Identities=17% Similarity=0.181 Sum_probs=91.0
Q ss_pred CceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc--cccCCCCCcEE
Q 004895 528 GPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS--SLGRLINLQTL 603 (724)
Q Consensus 528 ~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~--~i~~l~~L~~L 603 (724)
++++|++++|.+..++. ...+++|+.|.+ +.+....++...|.++++|++|++++|.+..+|. .+..+++|++|
T Consensus 77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L 154 (353)
T 2z80_A 77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDL--SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred CCCEEECCCCccCccCHhhcCCCCCCCEEEC--CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence 44444444444433321 113444444444 2222333444444444455555555544444443 34444455555
Q ss_pred EcCCcc-cCC--cccccCCCCCcEEEccCCcCccc-chhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 604 CLDGWR-LED--IAIVGQLKKLEILSLRGAEIKQL-PLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 604 ~L~~~~-l~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
++++|. +.. +..++.+++|++|++++|.++.+ |..+..+++|++|++++| .+..+|...++.+++|++|++++|.
T Consensus 155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCB
T ss_pred ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCc
Confidence 554442 333 13344455555555555544433 444555555555555552 3344444334445666666666553
Q ss_pred CccccccCC-------------------cc----chHHhhcCCCCCcEEEeecccccccccccc
Q 004895 680 SQWDKVEGG-------------------SN----ASLAELKGLSKLTTLEIDVRDAEMLRRIWS 720 (724)
Q Consensus 680 ~~~~~~~~~-------------------~~----~~l~~L~~L~~L~~L~l~~n~~~~lp~~~~ 720 (724)
......... .. .....+.++++|+.|++++|.++.+|...+
T Consensus 234 l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~ 297 (353)
T 2z80_A 234 LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF 297 (353)
T ss_dssp CTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence 221100000 00 112346778899999999999998887653
No 33
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.56 E-value=3e-14 Score=145.10 Aligned_cols=173 Identities=20% Similarity=0.280 Sum_probs=129.6
Q ss_pred EeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcEEEcCCccc
Q 004895 532 ISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQTLCLDGWRL 610 (724)
Q Consensus 532 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l 610 (724)
+.-.+.++..+|... .++|+.|.+ +.+....++...|.++++|++|++++|.+..+| ..+..+.+|++|++++|.+
T Consensus 12 ~~c~~~~l~~ip~~l-~~~l~~L~l--s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFYKIPDNL-PFSTKNLDL--SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEEC--TTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCccccCCCC-CCCccEEEC--CCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 344455566677643 257999999 445566677767899999999999999999765 4789999999999999999
Q ss_pred CC--cccccCCCCCcEEEccCCcCcccch-hhhcCCCCCeEccCCCCCCcccC-hHHhhCCCCCcEEEccCCCCcccccc
Q 004895 611 ED--IAIVGQLKKLEILSLRGAEIKQLPL-QIGQLTRLQLLDLSNCSSLVVIA-PNVISKLSRLEELYMGDSFSQWDKVE 686 (724)
Q Consensus 611 ~~--~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~ 686 (724)
+. +..+..+++|++|++++|.++.++. .+..+++|++|++++| .+..+. |..++.+++|++|++++|.. .
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l-----~ 162 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKI-----Q 162 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCC-----C
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCC-----C
Confidence 88 3679999999999999999998866 6899999999999995 555532 45689999999999999753 2
Q ss_pred CCccchHHhhcCCCCCc-EEEeeccccc
Q 004895 687 GGSNASLAELKGLSKLT-TLEIDVRDAE 713 (724)
Q Consensus 687 ~~~~~~l~~L~~L~~L~-~L~l~~n~~~ 713 (724)
+..+..+..+.+++.|. .|+++.|.++
T Consensus 163 ~~~~~~~~~l~~L~~l~l~L~ls~n~l~ 190 (276)
T 2z62_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN 190 (276)
T ss_dssp EECGGGGHHHHTCTTCCEEEECCSSCCC
T ss_pred cCCHHHhhhhhhccccceeeecCCCccc
Confidence 22233444455444333 3444444333
No 34
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.56 E-value=9.4e-15 Score=147.47 Aligned_cols=168 Identities=20% Similarity=0.232 Sum_probs=100.0
Q ss_pred ceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCc
Q 004895 529 PIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGW 608 (724)
Q Consensus 529 ~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 608 (724)
+..+.+..+.+..++....+++|+.|.+. .+....++ .+..+++|+.|++++|.+..+|. ++.+++|++|++++|
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~--~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGD--NSNIQSLA--GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECT--TSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECc--CCCcccch--HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 33444555555555444456666666662 22333333 25566677777777777666665 666777777777777
Q ss_pred ccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCC
Q 004895 609 RLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGG 688 (724)
Q Consensus 609 ~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 688 (724)
.++.++.+.. .+|++|++++|.++.+| .+..+++|++|++++ +.+..++ .++.+++|++|++++|. +.+.
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~--~l~~l~~L~~L~L~~N~-----i~~~ 165 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIV--MLGFLSKLEVLDLHGNE-----ITNT 165 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCG--GGGGCTTCCEEECTTSC-----CCBC
T ss_pred ccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCCh--HHccCCCCCEEECCCCc-----Ccch
Confidence 6666444444 66777777777666654 366677777777766 3455553 25667777777776653 2111
Q ss_pred ccchHHhhcCCCCCcEEEeecccccccc
Q 004895 689 SNASLAELKGLSKLTTLEIDVRDAEMLR 716 (724)
Q Consensus 689 ~~~~l~~L~~L~~L~~L~l~~n~~~~lp 716 (724)
..+..+++|+.|++++|.+...|
T Consensus 166 -----~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 166 -----GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp -----TTSTTCCCCCEEEEEEEEEECCC
T ss_pred -----HHhccCCCCCEEeCCCCcccCCc
Confidence 34556666777777776665544
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.56 E-value=9.2e-15 Score=151.37 Aligned_cols=178 Identities=20% Similarity=0.284 Sum_probs=144.5
Q ss_pred ccCceEEeccCCCcccCCCc-ccCCCccEEEEecccccccccch-hhhcCCCCceEEEcCCCcCCC-CCccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPER-LECPQLKLFLLFAKYDSTLQISD-HFFEGTEELKVLDFTGIRFSP-LPSSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~ 602 (724)
..++++|++++|.+..++.. ..+++|+.|.+ ..+....++. ..+..+++|++|++++|.+.. .|..+..+.+|++
T Consensus 77 ~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 77 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF--QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEEC--TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccCEEECCCCccccChhhcCCCCCCCEEEC--CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 56888999998888777643 37889999998 3344444544 568899999999999999984 5667899999999
Q ss_pred EEcCCcccCC---cccccCCCCCcEEEccCCcCccc-chhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 603 LCLDGWRLED---IAIVGQLKKLEILSLRGAEIKQL-PLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 603 L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
|++++|.+.. +..+..+++|++|++++|.++.+ |..+..+++|++|++++ +.+..+++..+..+++|++|++++|
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC
Confidence 9999999875 57899999999999999999977 66799999999999999 4677777767899999999999997
Q ss_pred CCccccccCCccchHHhhcCC-CCCcEEEeecccccc
Q 004895 679 FSQWDKVEGGSNASLAELKGL-SKLTTLEIDVRDAEM 714 (724)
Q Consensus 679 ~~~~~~~~~~~~~~l~~L~~L-~~L~~L~l~~n~~~~ 714 (724)
.. .+..+ ..+..+ ++|+.|++++|.+..
T Consensus 234 ~l-----~~~~~---~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 234 HI-----MTSKK---QELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CC-----CBCSS---SSCCCCCTTCCEEECTTCCEEC
T ss_pred CC-----cccCH---HHHHhhhccCCEEEccCCCeec
Confidence 43 22222 234556 489999999998864
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.56 E-value=4e-14 Score=148.24 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=32.4
Q ss_pred cCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc
Q 004895 527 KGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS 592 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~ 592 (724)
..++.|.+++|.+..++. ...+++|++|.+ +.+....+.+..|.++++|++|++++|.+..+|.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~ 117 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLIL--INNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC--CSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEEC--CCCcCCeeCHHHhcCCCCCCEEECCCCcCCccCh
Confidence 455556666665555543 124555666655 2223333433445555555555555555554443
No 37
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.56 E-value=8.7e-15 Score=154.84 Aligned_cols=180 Identities=19% Similarity=0.245 Sum_probs=138.8
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc-ccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS-LGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~ 602 (724)
+.++++|++++|.+..++. ...+++|+.|.+ +.+....++...|.++++|++|++++|.+..+|.. ++.+++|++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVL--TSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEEC--CCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 4578899999888887765 347888999988 34455566666788889999999999999888765 788999999
Q ss_pred EEcCCcccCCc-c--cccCCCCCcEEEccCC-cCcccc-hhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccC
Q 004895 603 LCLDGWRLEDI-A--IVGQLKKLEILSLRGA-EIKQLP-LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGD 677 (724)
Q Consensus 603 L~L~~~~l~~~-~--~~~~l~~L~~L~l~~~-~i~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 677 (724)
|++++|.++.+ . .+..+++|++|++++| .+..+| ..+..+++|++|++++| .+...++..++.+++|++|++++
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcCccCHHHHhccccCCeecCCC
Confidence 99999988873 3 5888999999999998 577664 56888899999999884 56666666788899999999888
Q ss_pred CCCccccccCCccchHHhhcCCCCCcEEEeecccccccc
Q 004895 678 SFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLR 716 (724)
Q Consensus 678 ~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp 716 (724)
|.. . ..+. ..+..+++|+.|+++.|.++.++
T Consensus 208 n~l-----~-~~~~--~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 208 KQH-----I-LLLE--IFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp SCS-----T-THHH--HHHHHTTTEEEEEEESCBCTTCC
T ss_pred Ccc-----c-cchh--hhhhhcccccEEECCCCcccccc
Confidence 642 1 1111 12345788999999999987765
No 38
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=2.9e-14 Score=161.79 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=48.6
Q ss_pred cCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc-ccCCCCCcEE
Q 004895 527 KGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS-LGRLINLQTL 603 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L 603 (724)
.+++.|++++|.+..++. ...+++|+.|.+ +.+....+++..|.++++|++|++++|.+..+|.. ++++++|++|
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM--GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEEC--CCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 345555555555444432 124445555555 22223334444445555555555555555544443 2445555555
Q ss_pred EcCCcccCC--cccccCCCCCcEEEccCCcCc
Q 004895 604 CLDGWRLED--IAIVGQLKKLEILSLRGAEIK 633 (724)
Q Consensus 604 ~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~ 633 (724)
+|++|.++. +..++.+++|++|++++|.++
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 555554444 123444455555555444443
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.55 E-value=6.1e-14 Score=146.82 Aligned_cols=177 Identities=15% Similarity=0.211 Sum_probs=93.3
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCC---CCCccccCCCCCcEE
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFS---PLPSSLGRLINLQTL 603 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~lp~~i~~l~~L~~L 603 (724)
.++++|.+++|.+..+|.... ++|+.|.+ ..+....++...|.++++|+.|++++|.+. ..|..+..+.+|++|
T Consensus 100 ~~L~~L~Ls~n~l~~l~~~~~-~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L 176 (330)
T 1xku_A 100 VKLERLYLSKNQLKELPEKMP-KTLQELRV--HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176 (330)
T ss_dssp TTCCEEECCSSCCSBCCSSCC-TTCCEEEC--CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred CCCCEEECCCCcCCccChhhc-ccccEEEC--CCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence 455666666666655554332 55666655 223334455555666666666666666654 234455666666666
Q ss_pred EcCCcccCCc-ccccCCCCCcEEEccCCcCccc-chhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCc
Q 004895 604 CLDGWRLEDI-AIVGQLKKLEILSLRGAEIKQL-PLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQ 681 (724)
Q Consensus 604 ~L~~~~l~~~-~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 681 (724)
++++|.++.+ ..+. ++|++|++++|.++.+ |..+..+++|++|++++ +.+..+++..++.+++|++|++++|...
T Consensus 177 ~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 177 RIADTNITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp ECCSSCCCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred ECCCCccccCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCCcCc
Confidence 6666655552 2221 4556666666655544 34455556666666655 3344444444555566666666554321
Q ss_pred cccccCCccchHHhhcCCCCCcEEEeecccccccccc
Q 004895 682 WDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRI 718 (724)
Q Consensus 682 ~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~ 718 (724)
..+ ..+..+++|+.|++++|.++.+|..
T Consensus 254 ------~lp---~~l~~l~~L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 254 ------KVP---GGLADHKYIQVVYLHNNNISAIGSN 281 (330)
T ss_dssp ------SCC---TTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred ------cCC---hhhccCCCcCEEECCCCcCCccChh
Confidence 111 1234455555666666655555543
No 40
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=2e-14 Score=139.65 Aligned_cols=164 Identities=20% Similarity=0.305 Sum_probs=125.4
Q ss_pred EEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc-ccCCCCCcEEEcCCcc
Q 004895 531 AISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS-LGRLINLQTLCLDGWR 609 (724)
Q Consensus 531 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~~ 609 (724)
.+...++.+..+|... .++|+.|.+ ..+....++...|.++++|++|++++|.+..+|.. +..+.+|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDL--ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEc--CCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 4566667777776543 468888888 33445567777788899999999999999877654 5789999999999999
Q ss_pred cCCc--ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCcccccc
Q 004895 610 LEDI--AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVE 686 (724)
Q Consensus 610 l~~~--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~ 686 (724)
++.+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|.. .
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~-----~ 161 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPW-----D 161 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCB-----C
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCe-----e
Confidence 8873 3478899999999999999988765 68899999999998 467778877788899999999988632 1
Q ss_pred CCccchHHhhcCCCCCcEEEeeccccc
Q 004895 687 GGSNASLAELKGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 687 ~~~~~~l~~L~~L~~L~~L~l~~n~~~ 713 (724)
..+++|+.|+++.|.++
T Consensus 162 ----------~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 162 ----------CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp ----------CCTTTTHHHHHHHHHCT
T ss_pred ----------cCCCCHHHHHHHHHhCC
Confidence 23345666666666554
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.55 E-value=4.8e-14 Score=151.35 Aligned_cols=39 Identities=31% Similarity=0.380 Sum_probs=20.2
Q ss_pred hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 639 IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 639 i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
+..+++|++|++++| .+...++..++.+++|++|++++|
T Consensus 244 l~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 282 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNN 282 (390)
T ss_dssp GGGCTTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSS
T ss_pred HcCCCCccEEECCCC-cCCCcChhHccccccCCEEECCCC
Confidence 444455555555552 344444444555566666665554
No 42
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.55 E-value=2.7e-14 Score=137.46 Aligned_cols=130 Identities=19% Similarity=0.245 Sum_probs=79.5
Q ss_pred hcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCcc-cchhhhcCCCCCe
Q 004895 571 FEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQ-LPLQIGQLTRLQL 647 (724)
Q Consensus 571 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~ 647 (724)
+..+++|+.|++++|.+..+| .+..+++|++|++++|.++. +..++.+++|++|++++|.++. .|..+..+++|++
T Consensus 62 l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 455666666666666555443 56666677777777776665 5666667777777777776663 4566667777777
Q ss_pred EccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccc
Q 004895 648 LDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 648 L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~ 713 (724)
|++++|..+..++ .+..+++|++|++++|.. .+ +..+..+++|+.|++++|.+.
T Consensus 141 L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i-----~~-----~~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 141 IDLSYNGAITDIM--PLKTLPELKSLNIQFDGV-----HD-----YRGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp EECCSCTBCCCCG--GGGGCSSCCEEECTTBCC-----CC-----CTTGGGCSSCCEEEECBC---
T ss_pred EEccCCCCccccH--hhcCCCCCCEEECCCCCC-----cC-----hHHhccCCCCCEEEeeCcccC
Confidence 7777654355554 266777777777766532 11 124555667777777777654
No 43
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.55 E-value=2.7e-14 Score=157.64 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=119.3
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 602 (724)
+..+++|++++|.+..++. ...+++|+.|.+ +.+....+++..|.++++|+.|++++|.+..+|. .+.++.+|++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 108 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELEL--NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTK 108 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEEC--CCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCE
Confidence 5678899999888877643 236888999988 3445556666678888999999999998888775 4688889999
Q ss_pred EEcCCcccCC--cccccCCCCCcEEEccCCcCccc-chhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 603 LCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQL-PLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 603 L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
|+|++|.+.. +..+..+++|++|++++|.++.+ |..+..+++|++|++++| .+..+++..+..+++|+.|++.+|.
T Consensus 109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred EECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCc
Confidence 9999988877 35688888888999888888866 446888888888888884 6677777778888888888888764
No 44
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.55 E-value=5.4e-14 Score=138.78 Aligned_cols=146 Identities=21% Similarity=0.306 Sum_probs=126.6
Q ss_pred eEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcEEEcCCc
Q 004895 530 IAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQTLCLDGW 608 (724)
Q Consensus 530 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~ 608 (724)
..++.+++.+..+|.... ++|+.|.+ +.+....+++..|.++++|+.|++++|.+..+|. .+..+.+|++|+|++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~-~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP-TNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC-CCCCEEEc--CCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 457778888888886543 88999999 4455666767778999999999999999998875 4689999999999999
Q ss_pred ccCCc--ccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 609 RLEDI--AIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 609 ~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
.++.+ ..+..+++|++|++++|.++.+|..+..+++|++|++++ +.+..+++..+..+++|+.|++.+|.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence 99883 347899999999999999999999999999999999999 57888888778999999999999875
No 45
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.54 E-value=8.9e-14 Score=146.69 Aligned_cols=171 Identities=22% Similarity=0.315 Sum_probs=122.3
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
..+++++++.+|.+..++....+++|+.|.+. .+....++. +..+++|+.|++++|.+..+|. +..+++|++|++
T Consensus 176 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~--~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAY--VNQITDITP--VANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEI 250 (347)
T ss_dssp CTTCSEEECTTSCCCCCGGGGGCTTCCEEECC--SSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred CCCCCEEEccCCcccccccccCCCccceeecc--cCCCCCCch--hhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEEC
Confidence 45777788887777777665567778887773 233333333 6677888888888888887766 778888888888
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccc
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKV 685 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 685 (724)
++|.++.++.+..+++|++|++++|.++.+| .+..+++|++|++++| .+...++..++.+++|++|++++|..
T Consensus 251 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l----- 323 (347)
T 4fmz_A 251 GTNQISDINAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHI----- 323 (347)
T ss_dssp CSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSC-----
T ss_pred CCCccCCChhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCcc-----
Confidence 8888877777888888888888888887774 4778888888888885 45666666778888888888887642
Q ss_pred cCCccchHHhhcCCCCCcEEEeeccccc
Q 004895 686 EGGSNASLAELKGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 686 ~~~~~~~l~~L~~L~~L~~L~l~~n~~~ 713 (724)
.+. ..+..+++|+.|++++|.++
T Consensus 324 ~~~-----~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 324 TDI-----RPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCC-----GGGGGCTTCSEESSSCC---
T ss_pred ccc-----cChhhhhccceeehhhhccc
Confidence 211 11566778888888888765
No 46
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=6.5e-14 Score=140.43 Aligned_cols=151 Identities=23% Similarity=0.382 Sum_probs=131.6
Q ss_pred ccCceEEeccCCCcccCCCc--ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPER--LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 602 (724)
+..++.|.+++|.+..++.. ..+++|+.|.+ +.+....++...|.++++|++|++++|.+..+|. .+..+.+|++
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNL--DYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC--TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEEC--CCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCE
Confidence 56899999999999887642 47899999999 4455666777788999999999999999998764 5789999999
Q ss_pred EEcCCcccCCc--ccccCCCCCcEEEccCCcCcccch-hhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 603 LCLDGWRLEDI--AIVGQLKKLEILSLRGAEIKQLPL-QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 603 L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
|+|++|.++.+ ..+..+++|++|++++|.++.+|. .+..+++|++|++++ +.+..+++..+..+++|++|++++|.
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 99999999883 347899999999999999999987 589999999999999 57788888788999999999999975
No 47
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.54 E-value=3.3e-14 Score=162.00 Aligned_cols=175 Identities=23% Similarity=0.212 Sum_probs=108.5
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~ 602 (724)
+.++++|++++|.+..++. ...+++|++|.+ +.+....+++..|.++++|++|++++|.+..+ |..++++.+|++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDL--SRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeC--CCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 4567777777777766543 236677777777 33344455555667777777777777777755 666777777777
Q ss_pred EEcCCcccCC-c-ccccCCCCCcEEEccCCcCc--ccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCc----EEE
Q 004895 603 LCLDGWRLED-I-AIVGQLKKLEILSLRGAEIK--QLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLE----ELY 674 (724)
Q Consensus 603 L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~--~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~----~L~ 674 (724)
|++++|.++. + ..++++++|++|++++|.++ .+|..++++++|++|++++| .+..+++..++.+++|+ +|+
T Consensus 109 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 109 LVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp EECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTTCCCEEE
T ss_pred EEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhccccccceee
Confidence 7777777665 2 45777777777777777666 35677777777777777773 45555555555555544 677
Q ss_pred ccCCCCccccccCCccchHHhhcCCCCCcEEEeecccc
Q 004895 675 MGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDA 712 (724)
Q Consensus 675 l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~ 712 (724)
+++|.... ..+ ..-...+|+.|++++|.+
T Consensus 188 l~~n~l~~-----~~~----~~~~~~~L~~L~L~~n~~ 216 (606)
T 3vq2_A 188 MSLNPIDF-----IQD----QAFQGIKLHELTLRGNFN 216 (606)
T ss_dssp CTTCCCCE-----ECT----TTTTTCEEEEEEEESCCS
T ss_pred ccCCCcce-----eCc----ccccCceeeeeeccCCcc
Confidence 76653211 111 111223677777777765
No 48
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.54 E-value=7.1e-14 Score=143.32 Aligned_cols=168 Identities=24% Similarity=0.319 Sum_probs=137.0
Q ss_pred EeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccC
Q 004895 532 ISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLE 611 (724)
Q Consensus 532 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~ 611 (724)
+.+..+.+..+.....+++|+.|.+. .+....++. +..+++|+.|++++|.+..+|. ++.+.+|++|++++|.++
T Consensus 29 ~~l~~~~~~~~~~~~~l~~L~~L~l~--~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 29 DNLKKKSVTDAVTQNELNSIDQIIAN--NSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HHTTCSCTTSEECHHHHHTCCEEECT--TSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC
T ss_pred HHhcCCCcccccchhhcCcccEEEcc--CCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC
Confidence 34555555554444578899999993 334444443 7889999999999999998887 999999999999999999
Q ss_pred CcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccc
Q 004895 612 DIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNA 691 (724)
Q Consensus 612 ~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 691 (724)
.++.++.+++|++|++++|.++.+| .+..+++|++|++++| .+..+ ..++.+++|++|++++|.. .+.
T Consensus 104 ~~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~L~~N~l-----~~~--- 171 (291)
T 1h6t_A 104 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQI-----SDI--- 171 (291)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCC--GGGGGCTTCSEEECCSSCC-----CCC---
T ss_pred CChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcc--hhhccCCCCCEEEccCCcc-----ccc---
Confidence 9888999999999999999999874 6899999999999995 56666 3489999999999998742 221
Q ss_pred hHHhhcCCCCCcEEEeecccccccccc
Q 004895 692 SLAELKGLSKLTTLEIDVRDAEMLRRI 718 (724)
Q Consensus 692 ~l~~L~~L~~L~~L~l~~n~~~~lp~~ 718 (724)
..+..+++|+.|+++.|.++.+|..
T Consensus 172 --~~l~~l~~L~~L~L~~N~i~~l~~l 196 (291)
T 1h6t_A 172 --VPLAGLTKLQNLYLSKNHISDLRAL 196 (291)
T ss_dssp --GGGTTCTTCCEEECCSSCCCBCGGG
T ss_pred --hhhcCCCccCEEECCCCcCCCChhh
Confidence 1277899999999999999888763
No 49
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.52 E-value=8e-14 Score=146.07 Aligned_cols=180 Identities=18% Similarity=0.246 Sum_probs=99.3
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTL 603 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 603 (724)
+.+++.|++++|.+..++. ...+++|+.|.+ ..+....+++..|.++++|++|++++|.+..+|..+. .+|++|
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVL--VNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVEL 128 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--CSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEEC--CCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEE
Confidence 3466777777777665532 235677777777 2333444544556666777777777666666555443 445555
Q ss_pred EcCCcccCCc--ccccCCCCCcEEEccCCc----------------------------------------------Cccc
Q 004895 604 CLDGWRLEDI--AIVGQLKKLEILSLRGAE----------------------------------------------IKQL 635 (724)
Q Consensus 604 ~L~~~~l~~~--~~~~~l~~L~~L~l~~~~----------------------------------------------i~~l 635 (724)
++++|.++.. ..+..+++|++|++++|. ++.+
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI 208 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc
Confidence 5555544441 224444444444444443 3333
Q ss_pred c-hhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccc
Q 004895 636 P-LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 636 p-~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~ 714 (724)
| ..+..+++|++|++++ +.+..+++..++.+++|++|++++|... ..+ ..+..+++|+.|+++.|.++.
T Consensus 209 ~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~------~lp---~~l~~l~~L~~L~l~~N~l~~ 278 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNKLS------RVP---AGLPDLKLLQVVYLHTNNITK 278 (332)
T ss_dssp CTTSSTTCTTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCSSCCC------BCC---TTGGGCTTCCEEECCSSCCCB
T ss_pred CHHHhcCCCCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCCCcCe------ecC---hhhhcCccCCEEECCCCCCCc
Confidence 2 3355555566666655 3445555544566666666666655321 111 235566777888888887777
Q ss_pred ccccc
Q 004895 715 LRRIW 719 (724)
Q Consensus 715 lp~~~ 719 (724)
+|...
T Consensus 279 ~~~~~ 283 (332)
T 2ft3_A 279 VGVND 283 (332)
T ss_dssp CCTTS
T ss_pred cChhH
Confidence 76543
No 50
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.52 E-value=2.8e-13 Score=142.85 Aligned_cols=172 Identities=18% Similarity=0.240 Sum_probs=93.9
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcC
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLD 606 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 606 (724)
.++++|++++|.+..++....+++|++|.+. .+....++ .+.++++|++|++++|.+..+|. +..+++|++|+++
T Consensus 66 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~--~n~i~~~~--~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISPLSNLVKLTNLYIG--TNKITDIS--ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLG 140 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECC--SSCCCCCG--GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECT
T ss_pred CCccEEEccCCccccchhhhcCCcCCEEEcc--CCcccCch--HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECC
Confidence 4555555555555554443445555555552 12222222 24555555555555555555544 5555555555555
Q ss_pred Ccc-cCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccc
Q 004895 607 GWR-LEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKV 685 (724)
Q Consensus 607 ~~~-l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 685 (724)
+|. +..++.+..+++|++|++++|.+..++. +..+++|++|++++| .+..+++ +..+++|+.|++++|..
T Consensus 141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l----- 211 (347)
T 4fmz_A 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQI----- 211 (347)
T ss_dssp TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCC-----
T ss_pred CCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceeecccCCC-----
Confidence 553 3334445555556666665555555544 555566666666553 3444433 45566666666655421
Q ss_pred cCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 686 EGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 686 ~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
. .+..+..+++|+.|++++|.++.+|.
T Consensus 212 ~-----~~~~~~~~~~L~~L~l~~n~l~~~~~ 238 (347)
T 4fmz_A 212 T-----DITPVANMTRLNSLKIGNNKITDLSP 238 (347)
T ss_dssp C-----CCGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred C-----CCchhhcCCcCCEEEccCCccCCCcc
Confidence 1 11226677889999999998877775
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.52 E-value=8.3e-14 Score=145.95 Aligned_cols=129 Identities=17% Similarity=0.216 Sum_probs=94.5
Q ss_pred CceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCcccch-hhhcCCCCCeEccCC
Q 004895 576 ELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQLPL-QIGQLTRLQLLDLSN 652 (724)
Q Consensus 576 ~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~ 652 (724)
.|+.|++++|.+..+|..+. .+|++|++++|.++. +..+..+++|++|++++|.++.+|. .+..+++|++|++++
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 250 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN 250 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC
Confidence 44444444444444444333 578888888888877 3678999999999999999998765 689999999999999
Q ss_pred CCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhh---cCCCCCcEEEeeccccc
Q 004895 653 CSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAEL---KGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 653 ~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L---~~L~~L~~L~l~~n~~~ 713 (724)
| .+..+|.. ++.+++|++|++++|.... .....+..+ ....+|+.|++++|.+.
T Consensus 251 N-~l~~lp~~-l~~l~~L~~L~l~~N~l~~-----~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 251 N-KLSRVPAG-LPDLKLLQVVYLHTNNITK-----VGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp S-CCCBCCTT-GGGCTTCCEEECCSSCCCB-----CCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred C-cCeecChh-hhcCccCCEEECCCCCCCc-----cChhHccccccccccccccceEeecCccc
Confidence 4 67788765 8999999999999975322 112222211 12567899999999876
No 52
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.52 E-value=8.5e-14 Score=136.42 Aligned_cols=146 Identities=22% Similarity=0.336 Sum_probs=123.5
Q ss_pred eEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcEEEcCCc
Q 004895 530 IAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQTLCLDGW 608 (724)
Q Consensus 530 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 608 (724)
+.+...++.+..+|.... ++++.|.+ ..+....++...|.++++|+.|++++|.+..+ |..+..+.+|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l--~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRL--EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEEC--CSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEEC--CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 457777888888886543 68999998 44556677777789999999999999999965 788999999999999999
Q ss_pred ccCCc--ccccCCCCCcEEEccCCcCccc-chhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 609 RLEDI--AIVGQLKKLEILSLRGAEIKQL-PLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 609 ~l~~~--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
.++.+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++ +.+..+++..+..+++|++|++++|.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 99883 3478999999999999999977 45688999999999999 56788888778999999999999874
No 53
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=1.1e-13 Score=133.16 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=126.1
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCC-CCccccCCCCCcEEE
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSP-LPSSLGRLINLQTLC 604 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~ 604 (724)
..+++++++++|.+..++....+++|+.|.+..+ ....++ .+..+++|++|++++|.+.. .|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n--~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNI--HATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESC--CCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccChHHHhcCCCCCEEEccCC--CCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4689999999999998887668999999999433 333332 47889999999999999984 688899999999999
Q ss_pred cCCcccCC--cccccCCCCCcEEEccCCc-CcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 605 LDGWRLED--IAIVGQLKKLEILSLRGAE-IKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 605 L~~~~l~~--~~~~~~l~~L~~L~l~~~~-i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
+++|.++. +..++.+++|++|++++|. ++.+| .+..+++|++|++++| .+..++ .+..+++|++|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT--TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH--HhccCCCCCEEEeeCcc
Confidence 99999987 6889999999999999997 88887 6999999999999995 566665 48999999999999864
No 54
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.51 E-value=1.6e-13 Score=160.35 Aligned_cols=177 Identities=20% Similarity=0.324 Sum_probs=126.0
Q ss_pred ccCceEEeccCCCcc-cCCCcc-cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCC-CCCccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQ-ELPERL-ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFS-PLPSSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~-~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~ 602 (724)
...+++|.+.+|.+. .+|... .+++|+.|.+ ..+......+..+..+++|++|++++|.+. .+|..++.+++|++
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L--~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 542 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISL--SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIW 542 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC--CSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEc--cCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCE
Confidence 456777777777765 344333 5777777777 233333333345677888888888888887 67888888888888
Q ss_pred EEcCCcccCC--cc------------------------------------------------------------------
Q 004895 603 LCLDGWRLED--IA------------------------------------------------------------------ 614 (724)
Q Consensus 603 L~L~~~~l~~--~~------------------------------------------------------------------ 614 (724)
|++++|.+.. |.
T Consensus 543 L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g 622 (768)
T 3rgz_A 543 LDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622 (768)
T ss_dssp EECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEE
T ss_pred EECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecc
Confidence 8888876542 21
Q ss_pred ----cccCCCCCcEEEccCCcCc-ccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCc
Q 004895 615 ----IVGQLKKLEILSLRGAEIK-QLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGS 689 (724)
Q Consensus 615 ----~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 689 (724)
.++.+.+|++||+++|.++ .+|..++++++|+.|++++| .+....|..++.|++|+.|++++|. +.+..
T Consensus 623 ~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~-----l~g~i 696 (768)
T 3rgz_A 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-DISGSIPDEVGDLRGLNILDLSSNK-----LDGRI 696 (768)
T ss_dssp ECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSC-----CEECC
T ss_pred cCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCC-ccCCCCChHHhCCCCCCEEECCCCc-----ccCcC
Confidence 2344677888888888887 77888999999999999984 4554445568999999999998863 44444
Q ss_pred cchHHhhcCCCCCcEEEeeccccc
Q 004895 690 NASLAELKGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 690 ~~~l~~L~~L~~L~~L~l~~n~~~ 713 (724)
|. .+.++++|+.|++++|.+.
T Consensus 697 p~---~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 697 PQ---AMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp CG---GGGGCCCCSEEECCSSEEE
T ss_pred Ch---HHhCCCCCCEEECcCCccc
Confidence 54 4556778999999999763
No 55
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.51 E-value=8.4e-14 Score=158.66 Aligned_cols=150 Identities=19% Similarity=0.208 Sum_probs=121.9
Q ss_pred ccCceEEeccCCCcccCCC-c-ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE-R-LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~-~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~ 602 (724)
..++++|++++|.+..++. . ..+++|++|.+ +.+....+++..|.++++|++|++++|.+..+| ..++++.+|++
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~L--s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLIL--TGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC--TTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeEC--CCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 5789999999999988743 2 47899999999 445566676677899999999999999999776 68999999999
Q ss_pred EEcCCcccCC---cccccCCCCCcEEEccCCcCcccc-hhhhcCCCCC----eEccCCCCCCcccChHHhhCCCCCcEEE
Q 004895 603 LCLDGWRLED---IAIVGQLKKLEILSLRGAEIKQLP-LQIGQLTRLQ----LLDLSNCSSLVVIAPNVISKLSRLEELY 674 (724)
Q Consensus 603 L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~----~L~l~~~~~l~~~~~~~i~~l~~L~~L~ 674 (724)
|++++|.+.. |..++++++|++|++++|.++.+| ..+..+++|+ +|++++ +.+..+++..+. ..+|+.|+
T Consensus 133 L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~-n~l~~~~~~~~~-~~~L~~L~ 210 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL-NPIDFIQDQAFQ-GIKLHELT 210 (606)
T ss_dssp EECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT-CCCCEECTTTTT-TCEEEEEE
T ss_pred EeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC-CCcceeCccccc-Cceeeeee
Confidence 9999999874 678999999999999999999774 4466666554 799988 456777766443 34788888
Q ss_pred ccCCC
Q 004895 675 MGDSF 679 (724)
Q Consensus 675 l~~~~ 679 (724)
+++|.
T Consensus 211 L~~n~ 215 (606)
T 3vq2_A 211 LRGNF 215 (606)
T ss_dssp EESCC
T ss_pred ccCCc
Confidence 87764
No 56
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.50 E-value=9.6e-14 Score=129.88 Aligned_cols=140 Identities=22% Similarity=0.199 Sum_probs=116.9
Q ss_pred CCCCceEEEcCCCcCC--CCCccccCCCCCcEEEcCCcccCCcccccCCCCCcEEEccCCcCcc-cchhhhcCCCCCeEc
Q 004895 573 GTEELKVLDFTGIRFS--PLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQ-LPLQIGQLTRLQLLD 649 (724)
Q Consensus 573 ~l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~ 649 (724)
..+.|+.|++++|.+. .+|..+..+++|++|++++|.++.+..++.+++|++|++++|.++. +|..+..+++|++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 3478999999999998 8998899999999999999998888889999999999999999997 777788899999999
Q ss_pred cCCCCCCcccCh-HHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccccccc
Q 004895 650 LSNCSSLVVIAP-NVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRI 718 (724)
Q Consensus 650 l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~ 718 (724)
+++| .+..++. ..++.+++|++|++++|. +.+..+.....+..+++|+.|+++.|.+..+|..
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-----l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCE-----VTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-----GGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-----CcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 9995 6677653 568999999999999874 3222221224577889999999999999888864
No 57
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.50 E-value=1.6e-13 Score=151.54 Aligned_cols=176 Identities=23% Similarity=0.284 Sum_probs=141.3
Q ss_pred eEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcEEEcCCc
Q 004895 530 IAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQTLCLDGW 608 (724)
Q Consensus 530 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 608 (724)
+.+..+++.+..+|... .++++.|.+ +.+....++...|.++++|++|++++|.+..+ |..++++.+|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDL--GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEEC--CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEEC--CCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45666777788888644 368999999 44556667777899999999999999999965 788999999999999999
Q ss_pred ccCCc--ccccCCCCCcEEEccCCcCccc-chhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccc
Q 004895 609 RLEDI--AIVGQLKKLEILSLRGAEIKQL-PLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKV 685 (724)
Q Consensus 609 ~l~~~--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 685 (724)
.++.+ ..+.++++|++|++++|.+..+ |..+..+++|++|++++ +.+..+++..++.+++|++|++++|....
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--- 166 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKCNLTS--- 166 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESCCCSS---
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCCcCcc---
Confidence 99883 4589999999999999999966 56799999999999999 56777777779999999999999974321
Q ss_pred cCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 686 EGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 686 ~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
.. ...+.++++|+.|+++.|.+..++.
T Consensus 167 --~~---~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 167 --IP---TEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp --CC---HHHHTTCTTCCEEEEESCCCCEECT
T ss_pred --cC---hhHhcccCCCcEEeCCCCcCcEeCh
Confidence 11 2335566777777777777666554
No 58
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.50 E-value=1.3e-13 Score=147.92 Aligned_cols=148 Identities=18% Similarity=0.163 Sum_probs=98.9
Q ss_pred ccCceEEeccCCCcccCCCc--ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPER--LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~ 602 (724)
..+++++++.++.+..+|.. ..+++|+.|.+ ..+....++...|.++++|+.|++++|.+..+| ..++.+++|++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEEC--CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 45677777777777777653 25677777777 333445555556777777777777777777553 44677777777
Q ss_pred EEcCCcccCC-ccc-ccCCCCCcEEEccCCcCcccch-hhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 603 LCLDGWRLED-IAI-VGQLKKLEILSLRGAEIKQLPL-QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 603 L~L~~~~l~~-~~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
|++++|.++. ++. ++.+++|++|++++|.++.+|+ .+..+++|++|++++| .+..++ ++.+++|+.|++++|.
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeeccccc
Confidence 7777777776 333 5677777777777777776643 4677777777777773 445543 4566777777776653
No 59
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.50 E-value=1.9e-14 Score=149.33 Aligned_cols=177 Identities=21% Similarity=0.174 Sum_probs=134.7
Q ss_pred ccCceEEeccCCCcc-cCCCc---ccCCCccEEEEecccccccccchhhhcCC-----CCceEEEcCCCcCCCCC-cccc
Q 004895 526 QKGPIAISLPYRDIQ-ELPER---LECPQLKLFLLFAKYDSTLQISDHFFEGT-----EELKVLDFTGIRFSPLP-SSLG 595 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~-~~~~~---~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~lp-~~i~ 595 (724)
..++++|++++|.+. .+|.. ..+++|+.|.+. .+....+| ..+..+ ++|++|++++|.+..+| ..++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls--~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR--NVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEE--SCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEcc--CCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 568999999999986 45654 468999999993 33444444 345555 89999999999999775 7899
Q ss_pred CCCCCcEEEcCCcccCC----cccc--cCCCCCcEEEccCCcCcccc---hh-hhcCCCCCeEccCCCCCCcccCh-HHh
Q 004895 596 RLINLQTLCLDGWRLED----IAIV--GQLKKLEILSLRGAEIKQLP---LQ-IGQLTRLQLLDLSNCSSLVVIAP-NVI 664 (724)
Q Consensus 596 ~l~~L~~L~L~~~~l~~----~~~~--~~l~~L~~L~l~~~~i~~lp---~~-i~~l~~L~~L~l~~~~~l~~~~~-~~i 664 (724)
.+++|++|++++|.+.. ++.+ +.+++|++|++++|.++.+| .. +..+++|++|++++| .+...++ ..+
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 249 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSC 249 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhh
Confidence 99999999999998654 3444 88999999999999998543 33 357899999999995 5555442 345
Q ss_pred hCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 665 SKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 665 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
..+++|++|++++|... ..+.. +. ++|+.|+++.|.++.+|.
T Consensus 250 ~~l~~L~~L~Ls~N~l~------~ip~~---~~--~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK------QVPKG---LP--AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp CCCTTCCEEECTTSCCS------SCCSS---CC--SEEEEEECCSSCCCSCCC
T ss_pred hhcCCCCEEECCCCccC------hhhhh---cc--CCceEEECCCCCCCCChh
Confidence 67899999999997532 12222 22 689999999999988876
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.50 E-value=1.6e-13 Score=156.44 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=126.0
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~ 602 (724)
+..+++|++++|.+..++. ...+++|++|++ +.+....+.+..|.++++|++|++++|.+..+ |..++.+.+|++
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDL--TRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEEC--CCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 6789999999999988743 247899999999 44455566667789999999999999999854 778999999999
Q ss_pred EEcCCcccCC--cccccCCCCCcEEEccCCcCcccc-hhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCc--EEEccC
Q 004895 603 LCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQLP-LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLE--ELYMGD 677 (724)
Q Consensus 603 L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~--~L~l~~ 677 (724)
|++++|.++. +..++++++|++|++++|.++.++ +.+..+++|++|++++ +.+..+++..++.+++|+ +|++++
T Consensus 110 L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~l~L~l~~ 188 (606)
T 3t6q_A 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN-NAIHYLSKEDMSSLQQATNLSLNLNG 188 (606)
T ss_dssp EECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS-SCCCEECHHHHHTTTTCCSEEEECTT
T ss_pred eeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc-CcccccChhhhhhhcccceeEEecCC
Confidence 9999999988 467899999999999999998763 3455599999999999 467788788889999999 888887
Q ss_pred CC
Q 004895 678 SF 679 (724)
Q Consensus 678 ~~ 679 (724)
|.
T Consensus 189 n~ 190 (606)
T 3t6q_A 189 ND 190 (606)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 61
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.3e-13 Score=135.05 Aligned_cols=146 Identities=17% Similarity=0.305 Sum_probs=121.3
Q ss_pred eEEeccCCCcccCCCcccCCCccEEEEeccccccccc-chhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcEEEcCC
Q 004895 530 IAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQI-SDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQTLCLDG 607 (724)
Q Consensus 530 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~ 607 (724)
+.++++++.+..+|... .+.++.|.+ +.+....+ +...|.++++|+.|++++|.+..+|. .+..+.+|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L--~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRL--NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEEC--CSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEc--CCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888889888888644 356788888 33444444 44568899999999999999997654 789999999999999
Q ss_pred cccCCc--ccccCCCCCcEEEccCCcCccc-chhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 608 WRLEDI--AIVGQLKKLEILSLRGAEIKQL-PLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 608 ~~l~~~--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
|.++.+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++ +.+..+++..+..+++|+.|++++|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 999883 4589999999999999999977 56689999999999999 56788877789999999999999874
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.50 E-value=3.1e-14 Score=162.63 Aligned_cols=152 Identities=13% Similarity=0.133 Sum_probs=114.3
Q ss_pred cchhhhcCCCCceEEEcCCCcCCC------------------CCcccc--CCCCCcEEEcCCcccCC--cccccCCCCCc
Q 004895 566 ISDHFFEGTEELKVLDFTGIRFSP------------------LPSSLG--RLINLQTLCLDGWRLED--IAIVGQLKKLE 623 (724)
Q Consensus 566 ~~~~~~~~l~~L~~L~l~~~~~~~------------------lp~~i~--~l~~L~~L~L~~~~l~~--~~~~~~l~~L~ 623 (724)
+|. .+.++++|++|++++|.+.. +|..++ ++.+|++|+|++|.+.. |..++++++|+
T Consensus 198 ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 444 47889999999999999987 999998 99999999999998766 67899999999
Q ss_pred EEEccCCc-Cc--ccchhhhcC------CCCCeEccCCCCCCcccCh-HHhhCCCCCcEEEccCCCCc-ccc-cc-----
Q 004895 624 ILSLRGAE-IK--QLPLQIGQL------TRLQLLDLSNCSSLVVIAP-NVISKLSRLEELYMGDSFSQ-WDK-VE----- 686 (724)
Q Consensus 624 ~L~l~~~~-i~--~lp~~i~~l------~~L~~L~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~-~~~-~~----- 686 (724)
+|++++|. ++ .+|..++++ ++|++|++++| .+..+|. ..++.+++|++|++++|... ... +.
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L 355 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEE
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCC
Confidence 99999997 88 489988887 89999999995 5667765 25899999999999887533 100 00
Q ss_pred ------C-CccchHHhhcCCCC-CcEEEeeccccccccccc
Q 004895 687 ------G-GSNASLAELKGLSK-LTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 687 ------~-~~~~~l~~L~~L~~-L~~L~l~~n~~~~lp~~~ 719 (724)
+ ........+.++++ |+.|+++.|.++.+|..+
T Consensus 356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~ 396 (636)
T 4eco_A 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396 (636)
T ss_dssp SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCC
T ss_pred CEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhh
Confidence 0 00011123455666 777777777777777643
No 63
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.49 E-value=2.4e-13 Score=159.00 Aligned_cols=181 Identities=20% Similarity=0.276 Sum_probs=117.1
Q ss_pred cCceEEeccCCCcc-cCCCcc-cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCC-CCCccccCCCCCcEE
Q 004895 527 KGPIAISLPYRDIQ-ELPERL-ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFS-PLPSSLGRLINLQTL 603 (724)
Q Consensus 527 ~~~~~l~l~~~~~~-~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L 603 (724)
.+++.|.+.+|.+. .+|... .+++|+.|.+ ..+......+..+.++++|++|++++|.+. .+|..++.+++|++|
T Consensus 442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L--~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 519 (768)
T 3rgz_A 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLIL--DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC--CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCceEEEe--cCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEE
Confidence 45666666666664 334332 4666777766 222333233344667777777777777777 667777777777777
Q ss_pred EcCCcccCC--cccccCCCCCcEEEccCCcCc-ccchhhh----------------------------------------
Q 004895 604 CLDGWRLED--IAIVGQLKKLEILSLRGAEIK-QLPLQIG---------------------------------------- 640 (724)
Q Consensus 604 ~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~-~lp~~i~---------------------------------------- 640 (724)
+|++|.+.. |..++.+++|++|++++|.++ .+|..+.
T Consensus 520 ~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (768)
T 3rgz_A 520 KLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599 (768)
T ss_dssp ECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTC
T ss_pred ECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccc
Confidence 777777664 566777777777777777665 5554332
Q ss_pred ------------------------------cCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCcc
Q 004895 641 ------------------------------QLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSN 690 (724)
Q Consensus 641 ------------------------------~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 690 (724)
.+++|+.|++++| .+....|..++.+++|+.|++++|. +.+..|
T Consensus 600 ~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~-----l~g~ip 673 (768)
T 3rgz_A 600 RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN-MLSGYIPKEIGSMPYLFILNLGHND-----ISGSIP 673 (768)
T ss_dssp CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSS-CCBSCCCGGGGGCTTCCEEECCSSC-----CCSCCC
T ss_pred cchhhhccccccccccccceecccCchhhhccccccEEECcCC-cccccCCHHHhccccCCEEeCcCCc-----cCCCCC
Confidence 2456777777774 4444444557888888888888753 444455
Q ss_pred chHHhhcCCCCCcEEEeeccccc-ccccc
Q 004895 691 ASLAELKGLSKLTTLEIDVRDAE-MLRRI 718 (724)
Q Consensus 691 ~~l~~L~~L~~L~~L~l~~n~~~-~lp~~ 718 (724)
. .+.+|++|+.|+++.|.++ .+|..
T Consensus 674 ~---~l~~L~~L~~LdLs~N~l~g~ip~~ 699 (768)
T 3rgz_A 674 D---EVGDLRGLNILDLSSNKLDGRIPQA 699 (768)
T ss_dssp G---GGGGCTTCCEEECCSSCCEECCCGG
T ss_pred h---HHhCCCCCCEEECCCCcccCcCChH
Confidence 4 4556778999999999886 45544
No 64
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.49 E-value=1.1e-13 Score=156.55 Aligned_cols=151 Identities=23% Similarity=0.282 Sum_probs=124.4
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~ 602 (724)
+..+++|++++|.+..++. ...+++|++|++ +.+....+++..|.++++|++|++++|.+..+| ..++.+.+|++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEEC--CCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 5689999999999987753 347899999999 344566677778899999999999999998664 68999999999
Q ss_pred EEcCCcccCCc--ccccCCCCCcEEEccCCcCcc--cchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCC----cEEE
Q 004895 603 LCLDGWRLEDI--AIVGQLKKLEILSLRGAEIKQ--LPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRL----EELY 674 (724)
Q Consensus 603 L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L----~~L~ 674 (724)
|++++|.++.. ..++++++|++|++++|.++. +|..++++++|++|++++| .+..+++..++.+++| +.|+
T Consensus 105 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~~~~~L~ 183 (570)
T 2z63_A 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLD 183 (570)
T ss_dssp EECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS-CCCEECGGGGHHHHTCTTCCCEEE
T ss_pred ccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC-ccceecHHHccchhccchhhhhcc
Confidence 99999998883 358999999999999998885 6899999999999999984 5667776667777777 6777
Q ss_pred ccCCC
Q 004895 675 MGDSF 679 (724)
Q Consensus 675 l~~~~ 679 (724)
+++|.
T Consensus 184 l~~n~ 188 (570)
T 2z63_A 184 LSLNP 188 (570)
T ss_dssp CTTCC
T ss_pred cCCCC
Confidence 77654
No 65
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.49 E-value=1.6e-13 Score=154.44 Aligned_cols=172 Identities=24% Similarity=0.306 Sum_probs=139.3
Q ss_pred ceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCc
Q 004895 529 PIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGW 608 (724)
Q Consensus 529 ~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~ 608 (724)
+.++.+..+.+..+.....+++|+.|.+ +.+....++ .+..+++|+.|+|++|.+..+|. ++.+.+|++|+|++|
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l--~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIA--NNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBC--TTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred HHHHhccCCCcccccchhcCCCCCEEEC--cCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC
Confidence 3344455555555555557889999988 333444454 37889999999999999998877 999999999999999
Q ss_pred ccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCC
Q 004895 609 RLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGG 688 (724)
Q Consensus 609 ~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~ 688 (724)
.+..++.++.+++|++|+|++|.++.+| .+..|++|+.|+|++| .+..+ ..++.|++|+.|++++|.+ .+.
T Consensus 98 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l--~~l~~l~~L~~L~Ls~N~l-----~~~ 168 (605)
T 1m9s_A 98 KIKDLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDI--TVLSRLTKLDTLSLEDNQI-----SDI 168 (605)
T ss_dssp CCCCCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCC--GGGGSCTTCSEEECCSSCC-----CCC
T ss_pred CCCCChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCc--hhhcccCCCCEEECcCCcC-----CCc
Confidence 9999889999999999999999999875 5999999999999995 56666 3489999999999999742 222
Q ss_pred ccchHHhhcCCCCCcEEEeeccccccccccc
Q 004895 689 SNASLAELKGLSKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 689 ~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~ 719 (724)
. .+..+++|+.|+|+.|.+..+|...
T Consensus 169 ~-----~l~~l~~L~~L~Ls~N~i~~l~~l~ 194 (605)
T 1m9s_A 169 V-----PLAGLTKLQNLYLSKNHISDLRALA 194 (605)
T ss_dssp G-----GGTTCTTCCEEECCSSCCCBCGGGT
T ss_pred h-----hhccCCCCCEEECcCCCCCCChHHc
Confidence 1 2778999999999999998887543
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.49 E-value=1.1e-13 Score=137.52 Aligned_cols=173 Identities=15% Similarity=0.087 Sum_probs=142.4
Q ss_pred ccCceEEeccCCC-cccCCCc--ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCc-
Q 004895 526 QKGPIAISLPYRD-IQELPER--LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQ- 601 (724)
Q Consensus 526 ~~~~~~l~l~~~~-~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~- 601 (724)
..++++|.+++|. +..++.. ..+++|+.|.+. +.+....++...|.++++|+.|++++|.+..+|. ++.+.+|+
T Consensus 54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~-~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~ 131 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR-NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDI 131 (239)
T ss_dssp CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE-EETTCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCS
T ss_pred CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC-CCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc-ccccccccc
Confidence 4689999999997 8887643 478999999993 2255667777789999999999999999999987 88888888
Q ss_pred --EEEcCCc-ccCCc--ccccCCCCCc-EEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCC-CCCcEEE
Q 004895 602 --TLCLDGW-RLEDI--AIVGQLKKLE-ILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKL-SRLEELY 674 (724)
Q Consensus 602 --~L~L~~~-~l~~~--~~~~~l~~L~-~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l-~~L~~L~ 674 (724)
+|++++| .++.+ ..+..+++|+ +|++++|.++.+|......++|++|++++|..+..+++..+..+ ++|+.|+
T Consensus 132 L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~ 211 (239)
T 2xwt_C 132 FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD 211 (239)
T ss_dssp EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred ccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence 9999999 88883 4589999999 99999999999998866669999999999645888988888999 9999999
Q ss_pred ccCCCCccccccCCccchHHhhcCCCCCcEEEeeccc
Q 004895 675 MGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRD 711 (724)
Q Consensus 675 l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~ 711 (724)
+++|.... .+.. .+++|+.|.++.+.
T Consensus 212 l~~N~l~~------l~~~-----~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 212 VSQTSVTA------LPSK-----GLEHLKELIARNTW 237 (239)
T ss_dssp CTTCCCCC------CCCT-----TCTTCSEEECTTC-
T ss_pred CCCCcccc------CChh-----HhccCceeeccCcc
Confidence 99864321 1111 56788999887653
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.48 E-value=2.1e-13 Score=157.61 Aligned_cols=151 Identities=21% Similarity=0.213 Sum_probs=126.9
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 602 (724)
+.++++|++++|.+..++. ...+++|++|.+ ..+....+++..|.++++|++|++++|.+..+|. .++++.+|++
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDV--GFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEEC--CSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEEC--CCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 5789999999999988875 347899999999 3345566767778999999999999999998886 5999999999
Q ss_pred EEcCCcccCCc--ccccCCCCCcEEEccCCcCccc-chhhhcCCCCCeEccCCCCCCcccChHHhh--CCCCCcEEEccC
Q 004895 603 LCLDGWRLEDI--AIVGQLKKLEILSLRGAEIKQL-PLQIGQLTRLQLLDLSNCSSLVVIAPNVIS--KLSRLEELYMGD 677 (724)
Q Consensus 603 L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~i~--~l~~L~~L~l~~ 677 (724)
|++++|.++.+ ..++++++|++|++++|.++.. |..+.++++|++|++++| .+...++..++ .+++|++|++++
T Consensus 102 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN-KIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC-cccccCHHHhhccccccccEEECCC
Confidence 99999998883 5799999999999999988865 556889999999999994 56777776554 568999999998
Q ss_pred CC
Q 004895 678 SF 679 (724)
Q Consensus 678 ~~ 679 (724)
|.
T Consensus 181 n~ 182 (680)
T 1ziw_A 181 NQ 182 (680)
T ss_dssp CC
T ss_pred Cc
Confidence 74
No 68
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=3.4e-13 Score=148.27 Aligned_cols=173 Identities=19% Similarity=0.230 Sum_probs=100.9
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcC
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLD 606 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 606 (724)
.+++.+++.++.+..++....+++|+.|++. .+....+++ +.++++|++|++++|.+..+|. ++++++|++|+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls--~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFS--NNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECC--SSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECC--CCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 4666777776666666655566777777762 233334443 5666777777777777666655 6677777777777
Q ss_pred CcccCCcccccCCCCCcEEEccCCcCcccch--------------------hhhcCCCCCeEccCCCCCCcccChHHhhC
Q 004895 607 GWRLEDIAIVGQLKKLEILSLRGAEIKQLPL--------------------QIGQLTRLQLLDLSNCSSLVVIAPNVISK 666 (724)
Q Consensus 607 ~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~--------------------~i~~l~~L~~L~l~~~~~l~~~~~~~i~~ 666 (724)
+|.++..+.+..+++|++|++++|.++.+|. .+.++++|++|++++| .+..++. +..
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~ 197 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAK 197 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGG
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hcc
Confidence 7766665446667777777777766665543 1444455555555553 2333321 455
Q ss_pred CCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 667 LSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 667 l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
+++|++|++++|.. .+ +..+..+++|+.|++++|.++.++.
T Consensus 198 l~~L~~L~l~~n~l-----~~-----~~~~~~l~~L~~L~l~~n~l~~~~~ 238 (466)
T 1o6v_A 198 LTNLESLIATNNQI-----SD-----ITPLGILTNLDELSLNGNQLKDIGT 238 (466)
T ss_dssp CTTCSEEECCSSCC-----CC-----CGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCEEEecCCcc-----cc-----cccccccCCCCEEECCCCCcccchh
Confidence 55555555555421 11 1124456677777777777665543
No 69
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.48 E-value=5.6e-13 Score=146.51 Aligned_cols=175 Identities=21% Similarity=0.254 Sum_probs=135.0
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
..+++.|++.+|.+..++....+++|+.|.+. .+....++. +.++++|+.|++++|.+..+|. +..+++|++|++
T Consensus 220 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~--~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L 294 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLA--NNQISNLAP--LSGLTKLTELKLGANQISNISP-LAGLTALTNLEL 294 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECC--SSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEEC
T ss_pred cCCCCEEECCCCCcccchhhhcCCCCCEEECC--CCccccchh--hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEc
Confidence 46788888888888777666678888888883 233333433 6788889999999988887766 788888999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccc
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKV 685 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 685 (724)
++|.++..+.++.+++|++|++++|.++.+++ +..+++|+.|++++| .+..++ .+..+++|+.|++++|. +
T Consensus 295 ~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~-----l 365 (466)
T 1o6v_A 295 NENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNN-KVSDVS--SLANLTNINWLSAGHNQ-----I 365 (466)
T ss_dssp CSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSC-----C
T ss_pred CCCcccCchhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCC-ccCCch--hhccCCCCCEEeCCCCc-----c
Confidence 99988886668888999999999998887765 788899999999885 566653 37889999999998864 2
Q ss_pred cCCccchHHhhcCCCCCcEEEeeccccccccccc
Q 004895 686 EGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 686 ~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~ 719 (724)
.+.. .+..+++|+.|++++|.+..+|...
T Consensus 366 ~~~~-----~~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 366 SDLT-----PLANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp CBCG-----GGTTCTTCCEEECCCEEEECCCBCC
T ss_pred Cccc-----hhhcCCCCCEEeccCCcccCCchhh
Confidence 2222 2678889999999999888766543
No 70
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.48 E-value=1.5e-13 Score=150.63 Aligned_cols=186 Identities=20% Similarity=0.225 Sum_probs=134.5
Q ss_pred ccCceEEeccCCCcccC-CC-cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQEL-PE-RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~-~~-~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~ 602 (724)
+.++++|++++|.+..+ +. ...+++|+.|.+. .+.....++...|.++++|++|++++|.+..+ |..++++.+|++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~-~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 107 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVE-QQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV 107 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECC-CCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECc-CCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence 57899999999999776 33 2478999999993 33233356677789999999999999999855 788999999999
Q ss_pred EEcCCcccCC--ccc--ccCCCCCcEEEccCCcCccc-chh-hhcCCCCCeEccCCCCCCcccChHHhhCC--CCCcEEE
Q 004895 603 LCLDGWRLED--IAI--VGQLKKLEILSLRGAEIKQL-PLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKL--SRLEELY 674 (724)
Q Consensus 603 L~L~~~~l~~--~~~--~~~l~~L~~L~l~~~~i~~l-p~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l--~~L~~L~ 674 (724)
|++++|.++. +.. ++.+++|++|++++|.++.+ |.. +.++++|++|++++| .+...++..++.+ .+|+.|+
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~~~L~~L~ 186 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQGKHFTLLR 186 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGTTCEEEEEE
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC-cccccChhhhhccccccccccc
Confidence 9999999987 444 89999999999999999877 555 889999999999995 5566666556655 5677777
Q ss_pred ccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccc
Q 004895 675 MGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 675 l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~ 713 (724)
+++|.................+..+++|+.|++++|.+.
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 225 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFK 225 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCC
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCccc
Confidence 776542211000000111122334566777777777653
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.48 E-value=2.6e-13 Score=155.32 Aligned_cols=174 Identities=20% Similarity=0.286 Sum_probs=118.3
Q ss_pred CCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcEEEcCCcccCC-c
Q 004895 536 YRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQTLCLDGWRLED-I 613 (724)
Q Consensus 536 ~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~-~ 613 (724)
+.+++.+|..+. ++++.|++ +.+....+++..|.++++|++|+|++|.+..+|+ .|.++.+|++|+|++|.++. +
T Consensus 40 ~~~l~~vP~~lp-~~~~~LdL--s~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 40 ELNFYKIPDNLP-FSTKNLDL--SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TSCCSSCCSSSC-TTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcCccCCCCC-cCCCEEEe--eCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 335566665332 46788887 4455666777778888888888888888887654 57788888888888888777 3
Q ss_pred -ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCccc-ChHHhhCCCCCcEEEccCCCCccccccCCcc
Q 004895 614 -AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVI-APNVISKLSRLEELYMGDSFSQWDKVEGGSN 690 (724)
Q Consensus 614 -~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~-~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 690 (724)
..|++|++|++|++++|.++.+|.. ++++++|++|++++| .+..+ .+..++.+++|++|++++|. +.+..+
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~ 190 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-----IQSIYC 190 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-----CCEECG
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc-----cccccc
Confidence 4578888888888888888877654 778888888888874 44433 24456778888888887753 333334
Q ss_pred chHHhhcCCCCC-cEEEeecccccccccc
Q 004895 691 ASLAELKGLSKL-TTLEIDVRDAEMLRRI 718 (724)
Q Consensus 691 ~~l~~L~~L~~L-~~L~l~~n~~~~lp~~ 718 (724)
..+..+.+++.+ ..++++.|.++.++..
T Consensus 191 ~~l~~L~~l~~~~~~~~ls~n~l~~i~~~ 219 (635)
T 4g8a_A 191 TDLRVLHQMPLLNLSLDLSLNPMNFIQPG 219 (635)
T ss_dssp GGGHHHHTCTTCCCEEECTTCCCCEECTT
T ss_pred ccccchhhhhhhhhhhhcccCcccccCcc
Confidence 455556555433 3677777766655543
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=2.1e-13 Score=154.74 Aligned_cols=147 Identities=19% Similarity=0.179 Sum_probs=90.3
Q ss_pred ccCceEEeccCCCcccCCCcc--cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPERL--ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 602 (724)
..+++.+++.++.+..+|... .+++|++|.+ +.+....+++..|.++++|++|++++|.+..+|+ .++++++|++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEEC--CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 355666666666666665432 4666777766 3333445555556666777777777776665543 4566777777
Q ss_pred EEcCCcccCC-ccc-ccCCCCCcEEEccCCcCcccch-hhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 603 LCLDGWRLED-IAI-VGQLKKLEILSLRGAEIKQLPL-QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 603 L~L~~~~l~~-~~~-~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
|+|++|.++. |+. ++++++|++|++++|.++.+|+ .+..+++|++|++++| .+..++ ++.+++|+.|++++|
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSS
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccC
Confidence 7777776666 322 4666777777777776665543 4666677777777663 444443 355666666666665
No 73
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.47 E-value=8.8e-14 Score=156.48 Aligned_cols=179 Identities=21% Similarity=0.260 Sum_probs=138.8
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc-ccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS-LGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~ 602 (724)
+..+++|++++|.+..++. ...+++|++|.+ +.+....+++..|.++++|++|++++|.+..+|.. ++++.+|++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 102 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLIL--KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKY 102 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEEC--CCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcE
Confidence 4678999999998877642 247889999998 44455566767788899999999999999877664 889999999
Q ss_pred EEcCCcccCC---cccccCCCCCcEEEccCCc-Ccccc-hhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccC
Q 004895 603 LCLDGWRLED---IAIVGQLKKLEILSLRGAE-IKQLP-LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGD 677 (724)
Q Consensus 603 L~L~~~~l~~---~~~~~~l~~L~~L~l~~~~-i~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 677 (724)
|++++|.++. +..++++++|++|++++|. +..+| ..+..+++|++|++++| .+....+..++.+++|++|+++.
T Consensus 103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~ 181 (549)
T 2z81_A 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIHHLTLHL 181 (549)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEEEEEEEC
T ss_pred EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccccCceEeccc
Confidence 9999998874 4678899999999999986 66776 46888999999999884 45665566688899999999887
Q ss_pred CCCccccccCCccchHHhhcCCCCCcEEEeeccccccc
Q 004895 678 SFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEML 715 (724)
Q Consensus 678 ~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~l 715 (724)
|... ..+.. .+..+++|+.|+++.|.+..+
T Consensus 182 n~~~------~~~~~--~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 182 SESA------FLLEI--FADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp SBST------THHHH--HHHSTTTBSEEEEESCBCTTC
T ss_pred Cccc------ccchh--hHhhcccccEEEccCCccccc
Confidence 6321 11111 234688999999999998775
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.47 E-value=1.8e-13 Score=145.01 Aligned_cols=172 Identities=19% Similarity=0.206 Sum_probs=111.6
Q ss_pred eEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhc-CCCCceEEEcCCCcCCCCC-ccccCCCCCcEEEcCC
Q 004895 530 IAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFE-GTEELKVLDFTGIRFSPLP-SSLGRLINLQTLCLDG 607 (724)
Q Consensus 530 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~ 607 (724)
+.+..+++.+..+|... .+.++.|.+ +.+....++...|. ++++|+.|+|++|.+..+| ..+..+.+|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~L--s~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDL--SHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEEC--CSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEEC--CCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45667777777776533 245777777 34455556666665 7777888888888777654 4577777888888888
Q ss_pred cccCCc--ccccCCCCCcEEEccCCcCccc-chhhhcCCCCCeEccCCCCCCcccChHHh---hCCCCCcEEEccCCCCc
Q 004895 608 WRLEDI--AIVGQLKKLEILSLRGAEIKQL-PLQIGQLTRLQLLDLSNCSSLVVIAPNVI---SKLSRLEELYMGDSFSQ 681 (724)
Q Consensus 608 ~~l~~~--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~~l~~~~~~~i---~~l~~L~~L~l~~~~~~ 681 (724)
|.++.+ ..+..+++|++|+|++|.++.+ |..+..+++|++|+|++ +.+..+|+..+ ..+++|+.|++++|.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l- 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKL- 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCC-
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCC-
Confidence 777763 3477777888888888877766 45577777888888877 45667766544 5677788888777532
Q ss_pred cccccCCccchHHhhcCCCC--CcEEEeeccccc
Q 004895 682 WDKVEGGSNASLAELKGLSK--LTTLEIDVRDAE 713 (724)
Q Consensus 682 ~~~~~~~~~~~l~~L~~L~~--L~~L~l~~n~~~ 713 (724)
..... ..+..+++ |+.|++++|.+.
T Consensus 176 ----~~l~~---~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 ----KKLPL---TDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp ----CCCCH---HHHHHSCHHHHTTEECCSSCEE
T ss_pred ----CccCH---HHhhhccHhhcceEEecCCCcc
Confidence 22112 22333443 356777777653
No 75
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.47 E-value=2.5e-13 Score=133.01 Aligned_cols=143 Identities=17% Similarity=0.237 Sum_probs=118.2
Q ss_pred cccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCcccc
Q 004895 560 YDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQLP 636 (724)
Q Consensus 560 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp 636 (724)
......+|... .+.|+.|++++|.+..+|. .+..+.+|++|+|++|.++. +..+..+++|++|+|++|.++.+|
T Consensus 20 ~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 96 (220)
T 2v9t_B 20 GKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96 (220)
T ss_dssp TSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC
T ss_pred CCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC
Confidence 34445566543 2689999999999997765 78999999999999999988 478999999999999999999998
Q ss_pred hh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccc
Q 004895 637 LQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 637 ~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~ 714 (724)
.. +..+++|++|++++ +.+..+++..+..+++|++|++++|.+ .+..+ ..+..+++|+.|++++|.+..
T Consensus 97 ~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l-----~~~~~---~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 97 KSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKL-----QTIAK---GTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCC-----SCCCT---TTTTTCTTCCEEECCSSCEEC
T ss_pred HhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCCcC-----CEECH---HHHhCCCCCCEEEeCCCCcCC
Confidence 87 58899999999999 578888888899999999999999753 22222 245678899999999998643
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.47 E-value=1.7e-13 Score=151.18 Aligned_cols=175 Identities=14% Similarity=0.139 Sum_probs=77.5
Q ss_pred CceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc------------
Q 004895 528 GPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS------------ 593 (724)
Q Consensus 528 ~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~------------ 593 (724)
++++|++++|.+..++. ...+++|++|.+. .+.....++ |..+++|++|++++|.+..+|..
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~ 110 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLS--SNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNN 110 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECT--TSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEee--CCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCc
Confidence 55566666665555432 1245556666552 222222222 44455555555555544332211
Q ss_pred -----ccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCccc-chhhh-cCCCCCeEccCCCCCCcccChHHh
Q 004895 594 -----LGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQL-PLQIG-QLTRLQLLDLSNCSSLVVIAPNVI 664 (724)
Q Consensus 594 -----i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~l-p~~i~-~l~~L~~L~l~~~~~l~~~~~~~i 664 (724)
...+++|++|+|++|.++. +..++.+++|++|++++|.++.+ |..+. .+++|++|++++| .+..+++ .
T Consensus 111 l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~--~ 187 (487)
T 3oja_A 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG--Q 187 (487)
T ss_dssp CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC--C
T ss_pred CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccc--c
Confidence 0123444555555554444 23444555555555555555432 33333 4455555555552 2333332 2
Q ss_pred hCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccccccc
Q 004895 665 SKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRI 718 (724)
Q Consensus 665 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~ 718 (724)
..+++|++|++++|.+ ++. + ..+..+++|+.|++++|.+..+|..
T Consensus 188 ~~l~~L~~L~Ls~N~l-----~~~-~---~~~~~l~~L~~L~Ls~N~l~~lp~~ 232 (487)
T 3oja_A 188 VVFAKLKTLDLSSNKL-----AFM-G---PEFQSAAGVTWISLRNNKLVLIEKA 232 (487)
T ss_dssp CCCTTCCEEECCSSCC-----CEE-C---GGGGGGTTCSEEECTTSCCCEECTT
T ss_pred ccCCCCCEEECCCCCC-----CCC-C---HhHcCCCCccEEEecCCcCcccchh
Confidence 3345555555544321 110 1 1233445555555555555555543
No 77
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.47 E-value=6.7e-13 Score=144.98 Aligned_cols=172 Identities=15% Similarity=0.140 Sum_probs=104.3
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
..++++|++++|.+..+|....+++|+.|.+. .+....++ +..+++|++|++++|.+..+| ++.+++|++|++
T Consensus 41 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls--~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDMTGIEKLTGLTKLICT--SNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNC 113 (457)
T ss_dssp HTTCCEEECCSSCCCCCTTGGGCTTCSEEECC--SSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEEC
T ss_pred cCCCCEEEccCCCcccChhhcccCCCCEEEcc--CCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEEC
Confidence 35667777777776666654566777777773 22233332 556667777777777766654 666777777777
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccc--
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWD-- 683 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~-- 683 (724)
++|.++.++ ++.+++|++|++++|.++.+| ++.+++|++|++++|..+..++ ++.+++|++|++++|.....
T Consensus 114 ~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~l 187 (457)
T 3bz5_A 114 DTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELDV 187 (457)
T ss_dssp CSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCCC
T ss_pred CCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceecc
Confidence 777666643 666667777777777666654 5566666666666654444331 45555555555555432110
Q ss_pred --------------cccCCccchHHhhcCCCCCcEEEeecccccccc
Q 004895 684 --------------KVEGGSNASLAELKGLSKLTTLEIDVRDAEMLR 716 (724)
Q Consensus 684 --------------~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp 716 (724)
.+++ + .+..+++|+.|+++.|.++.+|
T Consensus 188 ~~l~~L~~L~l~~N~l~~-----~-~l~~l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITK-----L-DLNQNIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp TTCTTCCEEECCSSCCSC-----C-CCTTCTTCSEEECCSSCCSCCC
T ss_pred ccCCCCCEEECcCCcCCe-----e-ccccCCCCCEEECcCCcccccC
Confidence 0111 1 3566788888888888887776
No 78
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.47 E-value=4.3e-13 Score=153.12 Aligned_cols=184 Identities=16% Similarity=0.145 Sum_probs=110.3
Q ss_pred ceEEeccCCCcccCCCccc---CCCccEEEEecccccccccchhhhc-------CCCCceEEEcCCCcCCCCCcccc-CC
Q 004895 529 PIAISLPYRDIQELPERLE---CPQLKLFLLFAKYDSTLQISDHFFE-------GTEELKVLDFTGIRFSPLPSSLG-RL 597 (724)
Q Consensus 529 ~~~l~l~~~~~~~~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~~~~lp~~i~-~l 597 (724)
+++|++++|.+..+|.... +++|+.|.+. .+......+..+. .+.+|+.|++++|.+..+|..+. .+
T Consensus 379 L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls--~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l 456 (636)
T 4eco_A 379 VENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS--YNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456 (636)
T ss_dssp CCEEECCSSCCSSCCSCCCTTCSSCEEEEECC--SSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT
T ss_pred CcEEEccCCcCcccchhhhhcccCccCEEECc--CCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccC
Confidence 7777777777776665432 3367777762 2222222222233 45677777777777777766543 46
Q ss_pred CCCcEEEcCCcccCC-cccc-c-------CCCCCcEEEccCCcCcccchhhh--cCCCCCeEccCCCCCCcccChHHhhC
Q 004895 598 INLQTLCLDGWRLED-IAIV-G-------QLKKLEILSLRGAEIKQLPLQIG--QLTRLQLLDLSNCSSLVVIAPNVISK 666 (724)
Q Consensus 598 ~~L~~L~L~~~~l~~-~~~~-~-------~l~~L~~L~l~~~~i~~lp~~i~--~l~~L~~L~l~~~~~l~~~~~~~i~~ 666 (724)
++|++|+|++|.++. |..+ . ++++|++|++++|.++.+|..+. .+++|++|++++| .+..+|.. ++.
T Consensus 457 ~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~~ 534 (636)
T 4eco_A 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQ-PLN 534 (636)
T ss_dssp CCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCG-GGG
T ss_pred CCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCCcChh-hhc
Confidence 777777777777665 2222 1 22377777777777777777765 7777777777773 45555443 667
Q ss_pred CCCCcEEEccCCCC-ccccccCCccchHHhhcCCCCCcEEEeeccccccccccc
Q 004895 667 LSRLEELYMGDSFS-QWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 667 l~~L~~L~l~~~~~-~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~ 719 (724)
+++|++|++++|.. ..+.+.+..+. .+.++++|+.|+++.|.+..+|..+
T Consensus 535 l~~L~~L~Ls~N~~ls~N~l~~~~p~---~l~~l~~L~~L~Ls~N~l~~ip~~~ 585 (636)
T 4eco_A 535 SSTLKGFGIRNQRDAQGNRTLREWPE---GITLCPSLTQLQIGSNDIRKVNEKI 585 (636)
T ss_dssp CSSCCEEECCSCBCTTCCBCCCCCCT---TGGGCSSCCEEECCSSCCCBCCSCC
T ss_pred CCCCCEEECCCCcccccCcccccChH---HHhcCCCCCEEECCCCcCCccCHhH
Confidence 77777777755421 11223333332 3345667777777777777776643
No 79
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.47 E-value=4.5e-13 Score=146.90 Aligned_cols=31 Identities=16% Similarity=0.246 Sum_probs=21.8
Q ss_pred ccCceEEeccCCCcccC-CC--cccCCCccEEEE
Q 004895 526 QKGPIAISLPYRDIQEL-PE--RLECPQLKLFLL 556 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~-~~--~~~~~~Lr~L~l 556 (724)
..++++|.+++|.+..+ |. ...+++|+.|.+
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 128 LTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred cccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 45778888888877666 33 236778888887
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.46 E-value=1.6e-13 Score=154.31 Aligned_cols=149 Identities=17% Similarity=0.210 Sum_probs=81.9
Q ss_pred cCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCC--CCccccCCCCCcE
Q 004895 527 KGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSP--LPSSLGRLINLQT 602 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--lp~~i~~l~~L~~ 602 (724)
.++++|.+++|.+..++. ...+++|++|++ +.+....+++..|.++++|++|++++|.+.. .|..++++.+|++
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDL--SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEEC--CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 455666666665555432 224556666666 3333444555555666666666666666652 3455566666666
Q ss_pred EEcCCcc-cCC-c-ccccCCCCCcEEEccCCcCcc-cchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 603 LCLDGWR-LED-I-AIVGQLKKLEILSLRGAEIKQ-LPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 603 L~L~~~~-l~~-~-~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
|++++|. +.. + ..++.+++|++|++++|.++. .|..+..+++|++|+++.| ....+|...++.+++|++|++++|
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEEESC
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC-cccccchhhHhhcccccEEEccCC
Confidence 6666665 333 2 345666666666666665553 4555666666666666553 334444433445666666666654
No 81
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.46 E-value=2.6e-13 Score=136.87 Aligned_cols=144 Identities=24% Similarity=0.290 Sum_probs=125.6
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
..++++|++.+|.+..++....+++|+.|.+ +.+....++. +.++++|+.|++++|.+..+|.... .+|++|++
T Consensus 40 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L--~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLAGMQFFTNLKELHL--SHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HTTCSEEECTTSCCCCCTTGGGCTTCCEEEC--CSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred cCcCcEEECcCCCcccchHHhhCCCCCEEEC--CCCccCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 4789999999999999986668999999999 3445555665 8899999999999999998876444 99999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
++|.++.++.++.+++|++|++++|.++.+| .+..+++|++|++++| .+... ..+..+++|+.|++++|.
T Consensus 114 ~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N-~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 114 DNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGN-EITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTS-CCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred cCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCC-cCcch--HHhccCCCCCEEeCCCCc
Confidence 9999999888999999999999999999987 6999999999999995 56666 348999999999999864
No 82
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=3.6e-13 Score=156.98 Aligned_cols=133 Identities=11% Similarity=0.106 Sum_probs=68.8
Q ss_pred ceEEEcCCCcCCCCCccccCCCC--CcEEEcCCcccCC-cccc----c--CCCCCcEEEccCCcCcccchhhh-cCCCCC
Q 004895 577 LKVLDFTGIRFSPLPSSLGRLIN--LQTLCLDGWRLED-IAIV----G--QLKKLEILSLRGAEIKQLPLQIG-QLTRLQ 646 (724)
Q Consensus 577 L~~L~l~~~~~~~lp~~i~~l~~--L~~L~L~~~~l~~-~~~~----~--~l~~L~~L~l~~~~i~~lp~~i~-~l~~L~ 646 (724)
|+.|++++|.+..+|..++.+.. |++|+|++|.+.. ++.+ + .+.+|++|++++|.++.+|..+. .+++|+
T Consensus 621 L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~ 700 (876)
T 4ecn_A 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIS 700 (876)
T ss_dssp CCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCS
T ss_pred CCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCC
Confidence 44444444444444444433322 4444444444433 1111 1 22356666666666666666543 566666
Q ss_pred eEccCCCCCCcccChHHhhC-------CCCCcEEEccCCCCccccccCCccchHHhhc--CCCCCcEEEeeccccccccc
Q 004895 647 LLDLSNCSSLVVIAPNVISK-------LSRLEELYMGDSFSQWDKVEGGSNASLAELK--GLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 647 ~L~l~~~~~l~~~~~~~i~~-------l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~--~L~~L~~L~l~~n~~~~lp~ 717 (724)
+|++++| .+..+|+..+.. |++|++|++++|.+. ..+ ..+. .+++|+.|+++.|.+..+|.
T Consensus 701 ~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~------~lp---~~l~~~~l~~L~~L~Ls~N~L~~lp~ 770 (876)
T 4ecn_A 701 TIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT------SLS---DDFRATTLPYLSNMDVSYNCFSSFPT 770 (876)
T ss_dssp EEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC------CCC---GGGSTTTCTTCCEEECCSSCCSSCCC
T ss_pred EEECCCC-cCCccChHHhccccccccccCCccEEECCCCCCc------cch---HHhhhccCCCcCEEEeCCCCCCccch
Confidence 6666663 444555432221 226666666665321 111 2333 67788888888888877775
Q ss_pred cc
Q 004895 718 IW 719 (724)
Q Consensus 718 ~~ 719 (724)
.+
T Consensus 771 ~l 772 (876)
T 4ecn_A 771 QP 772 (876)
T ss_dssp GG
T ss_pred hh
Confidence 54
No 83
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=6.9e-13 Score=154.63 Aligned_cols=185 Identities=10% Similarity=0.066 Sum_probs=97.8
Q ss_pred cC-ceEEeccCCCcccCCCccc---CCCccEEEEecccccccccchhh---hc--CCCCceEEEcCCCcCCCCCcccc-C
Q 004895 527 KG-PIAISLPYRDIQELPERLE---CPQLKLFLLFAKYDSTLQISDHF---FE--GTEELKVLDFTGIRFSPLPSSLG-R 596 (724)
Q Consensus 527 ~~-~~~l~l~~~~~~~~~~~~~---~~~Lr~L~l~~~~~~~~~~~~~~---~~--~l~~L~~L~l~~~~~~~lp~~i~-~ 596 (724)
.+ ++.|++++|.+..+|.... .++|+.|.+..+ .....++.+ +. .+.+|+.|++++|.+..+|..+. .
T Consensus 618 ~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N--~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~ 695 (876)
T 4ecn_A 618 TDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN--KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695 (876)
T ss_dssp CTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSS--CTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHT
T ss_pred cccCCEEECcCCCCCcCchhhhccccCCCCEEECcCC--cCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHcc
Confidence 44 8888888888777765432 234677766322 111111110 11 22356666666666666665543 5
Q ss_pred CCCCcEEEcCCcccCC-ccccc--------CCCCCcEEEccCCcCcccchhhh--cCCCCCeEccCCCCCCcccChHHhh
Q 004895 597 LINLQTLCLDGWRLED-IAIVG--------QLKKLEILSLRGAEIKQLPLQIG--QLTRLQLLDLSNCSSLVVIAPNVIS 665 (724)
Q Consensus 597 l~~L~~L~L~~~~l~~-~~~~~--------~l~~L~~L~l~~~~i~~lp~~i~--~l~~L~~L~l~~~~~l~~~~~~~i~ 665 (724)
+++|++|+|++|.++. |..+. ++++|++|+|++|.++.+|..+. .+++|++|++++| .+..+|.. ++
T Consensus 696 l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~-l~ 773 (876)
T 4ecn_A 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQ-PL 773 (876)
T ss_dssp TCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCG-GG
T ss_pred CCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCC-CCCccchh-hh
Confidence 6666666666666555 22222 22366666666666666666655 6666666666663 44445433 55
Q ss_pred CCCCCcEEEccCCCC-ccccccCCccchHHhhcCCCCCcEEEeecccccccccc
Q 004895 666 KLSRLEELYMGDSFS-QWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRI 718 (724)
Q Consensus 666 ~l~~L~~L~l~~~~~-~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~ 718 (724)
.+++|+.|++++|.. ..+.+.+..+ ..+.++++|+.|++++|.+..+|..
T Consensus 774 ~L~~L~~L~Ls~N~~ls~N~l~~~ip---~~l~~L~~L~~L~Ls~N~L~~Ip~~ 824 (876)
T 4ecn_A 774 NSSQLKAFGIRHQRDAEGNRILRQWP---TGITTCPSLIQLQIGSNDIRKVDEK 824 (876)
T ss_dssp GCTTCCEEECCCCBCTTCCBCCCCCC---TTGGGCSSCCEEECCSSCCCBCCSC
T ss_pred cCCCCCEEECCCCCCcccccccccCh---HHHhcCCCCCEEECCCCCCCccCHh
Confidence 666666666655321 1111222222 2333455666666666666656554
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.45 E-value=2.4e-13 Score=140.96 Aligned_cols=173 Identities=18% Similarity=0.149 Sum_probs=113.1
Q ss_pred ccCceEEeccCCCcccCCCcc-cC-----CCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCC---CCccc--
Q 004895 526 QKGPIAISLPYRDIQELPERL-EC-----PQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSP---LPSSL-- 594 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~-~~-----~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp~~i-- 594 (724)
..++++|++++|.+..+|... .+ ++|+.|.+ +.+....++...|.++++|+.|++++|.+.. +|..+
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L--~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI--AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEE--ESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEe--eCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 456777788777776665432 22 77888877 3344555665667777888888888877652 34444
Q ss_pred cCCCCCcEEEcCCcccCCc-----ccccCCCCCcEEEccCCcCcccc--hhhhcCCCCCeEccCCCCCCcccChHHhhCC
Q 004895 595 GRLINLQTLCLDGWRLEDI-----AIVGQLKKLEILSLRGAEIKQLP--LQIGQLTRLQLLDLSNCSSLVVIAPNVISKL 667 (724)
Q Consensus 595 ~~l~~L~~L~L~~~~l~~~-----~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l 667 (724)
+.+.+|++|++++|.++.+ ..+..+++|++|++++|.++..+ ..+..+++|++|++++| .++.+|.. +.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~-~~-- 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKG-LP-- 273 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSS-CC--
T ss_pred ccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhh-cc--
Confidence 6777888888888877742 22356678888888888777544 34556777888888773 45666553 33
Q ss_pred CCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccc
Q 004895 668 SRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 668 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~ 714 (724)
++|++|++++|. +++. + .+..+++|+.|++++|.++.
T Consensus 274 ~~L~~L~Ls~N~-----l~~~-p----~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNR-----LDRN-P----SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSC-----CCSC-C----CTTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCC-----CCCC-h----hHhhCCCCCEEeccCCCCCC
Confidence 678888887753 2221 1 25566777888888777653
No 85
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.44 E-value=6.3e-13 Score=153.59 Aligned_cols=179 Identities=19% Similarity=0.200 Sum_probs=144.7
Q ss_pred eEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcEEEcCCc
Q 004895 530 IAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQTLCLDGW 608 (724)
Q Consensus 530 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 608 (724)
+.++.+++.+..+|.... ++++.|.+ +.+....++...|.++++|++|++++|.+..+ |..++++.+|++|+|++|
T Consensus 7 ~~~~cs~~~L~~ip~~~~-~~l~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP-TNITVLNL--THNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSCSC-TTCSEEEC--CSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccccC-CCCcEEEC--CCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 356777788888886543 78999999 44556677887899999999999999999965 678899999999999999
Q ss_pred ccCC-cc-cccCCCCCcEEEccCCcCcccc-hhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccc
Q 004895 609 RLED-IA-IVGQLKKLEILSLRGAEIKQLP-LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKV 685 (724)
Q Consensus 609 ~l~~-~~-~~~~l~~L~~L~l~~~~i~~lp-~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 685 (724)
.++. ++ .++++++|++|++++|.++.+| ..++++++|++|++++| .+...++..++++++|++|++++|. +
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~-----l 157 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNK-----I 157 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSS-CCSCCCCCSSSCCTTCCEEECCSSC-----C
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCC-cccccCchhhcccccCCEEEccCCc-----c
Confidence 9988 33 5999999999999999999886 56999999999999995 5666777778999999999999874 2
Q ss_pred cCCccchHHhhcCCCCCcEEEeecccccccccc
Q 004895 686 EGGSNASLAELKGLSKLTTLEIDVRDAEMLRRI 718 (724)
Q Consensus 686 ~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~ 718 (724)
.+..+..+. ...+++|+.|+++.|.++.++..
T Consensus 158 ~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~ 189 (680)
T 1ziw_A 158 QALKSEELD-IFANSSLKKLELSSNQIKEFSPG 189 (680)
T ss_dssp CCBCHHHHG-GGTTCEESEEECTTCCCCCBCTT
T ss_pred cccCHHHhh-ccccccccEEECCCCcccccChh
Confidence 222222222 23467899999999988776543
No 86
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.43 E-value=6.5e-13 Score=130.06 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=119.3
Q ss_pred cEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC--ccccCCCCCcEEEcCCcccCCc--ccccCCCCCcEEEc
Q 004895 552 KLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP--SSLGRLINLQTLCLDGWRLEDI--AIVGQLKKLEILSL 627 (724)
Q Consensus 552 r~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp--~~i~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l 627 (724)
+++.+ +.+....+|..+ ...++.|++++|.+..++ ..+..+.+|++|+|++|.++.+ ..+..+++|++|++
T Consensus 14 ~~l~~--s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDC--SNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEEC--CSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEe--CCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 45555 334455566543 346789999999999763 3488999999999999999883 47999999999999
Q ss_pred cCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEE
Q 004895 628 RGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLE 706 (724)
Q Consensus 628 ~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~ 706 (724)
++|.++.+|.. +..+++|++|++++ +.+..+++..+..+++|++|++++|. +.+..+ ..+..+++|+.|+
T Consensus 89 s~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~---~~~~~l~~L~~L~ 159 (220)
T 2v70_A 89 TSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQ-----ITTVAP---GAFDTLHSLSTLN 159 (220)
T ss_dssp CSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSC-----CCCBCT---TTTTTCTTCCEEE
T ss_pred CCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCc-----CCEECH---HHhcCCCCCCEEE
Confidence 99999988765 88999999999999 56788877789999999999999974 332222 3466788999999
Q ss_pred eeccccc
Q 004895 707 IDVRDAE 713 (724)
Q Consensus 707 l~~n~~~ 713 (724)
+++|.+.
T Consensus 160 L~~N~l~ 166 (220)
T 2v70_A 160 LLANPFN 166 (220)
T ss_dssp CCSCCEE
T ss_pred ecCcCCc
Confidence 9999875
No 87
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.43 E-value=1.1e-12 Score=148.28 Aligned_cols=182 Identities=20% Similarity=0.268 Sum_probs=142.2
Q ss_pred eEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcEEEcCCc
Q 004895 530 IAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQTLCLDGW 608 (724)
Q Consensus 530 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 608 (724)
+.+.-++.++..+|... .++++.|++ +.+....++...|.++++|++|++++|.+..+ |..++++.+|++|+|++|
T Consensus 10 ~~~~c~~~~l~~ip~~l-~~~l~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDNL-PFSTKNLDL--SFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSCCSSS-CSSCCEEEC--CSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccccCCCc-cccccEEEc--cCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 34555556677777643 367999999 44555667777789999999999999999976 457899999999999999
Q ss_pred ccCC--cccccCCCCCcEEEccCCcCcccch-hhhcCCCCCeEccCCCCCCccc-ChHHhhCCCCCcEEEccCCCCcccc
Q 004895 609 RLED--IAIVGQLKKLEILSLRGAEIKQLPL-QIGQLTRLQLLDLSNCSSLVVI-APNVISKLSRLEELYMGDSFSQWDK 684 (724)
Q Consensus 609 ~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~-~~~~i~~l~~L~~L~l~~~~~~~~~ 684 (724)
.++. +..++++++|++|++++|.++.+|. .++++++|++|++++| .+..+ .|..++++++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~----- 160 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK----- 160 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-----
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-----
Confidence 9988 3679999999999999999998876 5999999999999995 45542 24568999999999999874
Q ss_pred ccCCccchHHhhcCCCCC-cEEEeecccccccccccc
Q 004895 685 VEGGSNASLAELKGLSKL-TTLEIDVRDAEMLRRIWS 720 (724)
Q Consensus 685 ~~~~~~~~l~~L~~L~~L-~~L~l~~n~~~~lp~~~~ 720 (724)
+.+..+..+..+.+|+.+ ..|+++.|.+..++...+
T Consensus 161 l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~ 197 (570)
T 2z63_A 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197 (570)
T ss_dssp CCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT
T ss_pred cceecHHHccchhccchhhhhcccCCCCceecCHHHh
Confidence 333334456666666444 689999998877765443
No 88
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.42 E-value=5e-13 Score=141.60 Aligned_cols=151 Identities=22% Similarity=0.297 Sum_probs=130.6
Q ss_pred ccCceEEeccCCCcccCCCcc---cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCc
Q 004895 526 QKGPIAISLPYRDIQELPERL---ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQ 601 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~---~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~ 601 (724)
+..+++|++++|.+..++... .+++|+.|.+ +.+....++...|.++++|+.|+|++|.+..+|. .+..+.+|+
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L--~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLL--SHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEEC--CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEEC--CCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence 567899999999998876542 7899999999 4556677777789999999999999999997755 689999999
Q ss_pred EEEcCCcccCC--cccccCCCCCcEEEccCCcCcccchhh----hcCCCCCeEccCCCCCCcccChHHhhCCCC--CcEE
Q 004895 602 TLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQLPLQI----GQLTRLQLLDLSNCSSLVVIAPNVISKLSR--LEEL 673 (724)
Q Consensus 602 ~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~i----~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~--L~~L 673 (724)
+|+|++|.++. +..+..+++|++|+|++|.++.+|..+ ..+++|++|+|++ +.+..+|+..+..+++ |+.|
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l 194 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGL 194 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTE
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceE
Confidence 99999999987 467999999999999999999999876 6799999999999 6788999888899987 4899
Q ss_pred EccCCC
Q 004895 674 YMGDSF 679 (724)
Q Consensus 674 ~l~~~~ 679 (724)
++.+|.
T Consensus 195 ~l~~N~ 200 (361)
T 2xot_A 195 YLHNNP 200 (361)
T ss_dssp ECCSSC
T ss_pred EecCCC
Confidence 999875
No 89
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.42 E-value=7.1e-13 Score=150.93 Aligned_cols=22 Identities=5% Similarity=0.138 Sum_probs=14.1
Q ss_pred hhcCCCCCcEEEeecccccccc
Q 004895 695 ELKGLSKLTTLEIDVRDAEMLR 716 (724)
Q Consensus 695 ~L~~L~~L~~L~l~~n~~~~lp 716 (724)
.+.++++|+.|+++.|.+...+
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~~~~ 516 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLTSSS 516 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCGGG
T ss_pred hhccccCCCEEECCCCccCcCC
Confidence 3456667777777777665544
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.42 E-value=1.3e-12 Score=128.81 Aligned_cols=148 Identities=19% Similarity=0.268 Sum_probs=118.9
Q ss_pred cEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcEEEcCCcccCCc--ccccCCCCCcEEEcc
Q 004895 552 KLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQTLCLDGWRLEDI--AIVGQLKKLEILSLR 628 (724)
Q Consensus 552 r~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l~ 628 (724)
+++.+ .......+|... .++|++|++++|.+..+ |..+..+.+|++|+|++|.++.+ ..+..+++|++|+++
T Consensus 22 ~~v~c--~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 22 TTVDC--RSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TEEEC--TTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEeEc--cCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 34444 334455566533 37899999999999976 67889999999999999999883 457899999999999
Q ss_pred CCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEe
Q 004895 629 GAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEI 707 (724)
Q Consensus 629 ~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l 707 (724)
+|.++.+|.. +..+++|++|++++ +.+..+|.. +..+++|++|++++|.+ .+..+ ..+..+++|+.|++
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~-~~~l~~L~~L~L~~N~l-----~~~~~---~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRG-IERLTHLTHLALDQNQL-----KSIPH---GAFDRLSSLTHAYL 166 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTT-GGGCTTCSEEECCSSCC-----CCCCT---TTTTTCTTCCEEEC
T ss_pred CCcCCccChhHhCcchhhCeEeccC-CcccccCcc-cccCCCCCEEECCCCcC-----CccCH---HHHhCCCCCCEEEe
Confidence 9999999776 68999999999999 567788765 79999999999999743 22111 34677889999999
Q ss_pred ecccccc
Q 004895 708 DVRDAEM 714 (724)
Q Consensus 708 ~~n~~~~ 714 (724)
++|.+..
T Consensus 167 ~~N~~~c 173 (229)
T 3e6j_A 167 FGNPWDC 173 (229)
T ss_dssp TTSCBCT
T ss_pred eCCCccC
Confidence 9998754
No 91
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=2.3e-11 Score=130.14 Aligned_cols=297 Identities=15% Similarity=0.135 Sum_probs=178.3
Q ss_pred ccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhcc---C-CCeEEEEEEecCCChHHHHHH
Q 004895 160 NIFNSRKKIFQDVIEALK----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDN---V-FDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~l~~~ 231 (724)
..++||+++++.+..++. ....+.+.|+|++|+||||+|+.+++...... . --.++|+++....+...++..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 98 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASA 98 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHH
Confidence 678999999999999884 34567899999999999999999999874321 1 123678888888888899999
Q ss_pred HHHhhCCCCCCCch-hHHHHHHHHHHHh-cCCcEEEEEccccccccc----cccccccCCCCcCCCCCC-CCCcEEEEEe
Q 004895 232 LASDLGMNFDSNDL-IYHRAKQLCQRLK-KEKRVLIILDNIWTKLEL----DKIGIPYGDVDEKDKNDD-PRRCTIILTS 304 (724)
Q Consensus 232 i~~~l~~~~~~~~~-~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~~~----~~l~~~~~~~~~~~~~~~-~~~s~ilvTt 304 (724)
++.+++...+.... .......+...+. .+++.+|||||++..... +.+...+... .... ..+..+|+||
T Consensus 99 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 99 IAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRIN----QELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGG----GCC-----CEEEEEC
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhch----hhcCCCceEEEEEEE
Confidence 99999765432221 2334555666664 346899999999765321 1121111100 0001 3456788888
Q ss_pred cccchh----hhhcCC--CceEecCCCCHHHHHHHHHHHhCCC-CCCCCchhHHHHHHHHhC---Cchh-HHHHHHHHhc
Q 004895 305 RSRDLL----CIDMNS--QKMFWIDALSEEEALQLFEKIVGES-TKASDFRPLAEEIVGKCG---GLPV-ALSTVANALK 373 (724)
Q Consensus 305 R~~~v~----~~~~~~--~~~~~l~~L~~~e~~~Lf~~~~~~~-~~~~~l~~~~~~I~~~c~---GlPL-ai~~~~~~l~ 373 (724)
+..... ...... ...+.+++++.++..+++.+.+... ....--++..+.+++.++ |.|. ++.++.....
T Consensus 175 ~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~ 254 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGE 254 (387)
T ss_dssp SCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 765321 111111 2478999999999999999886420 111112456788999998 9994 3333322221
Q ss_pred -----C--C-CHHHHHHHHHHHhcCccccccCCCcccchhhHhhhhhcHHHHHHHHHhhc-cCCCCCcccHHHHHHHHhh
Q 004895 374 -----N--K-SPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDDEAKSLFLLCG-LHREGRPIHVHYLLRYVMG 444 (724)
Q Consensus 374 -----~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s-~fp~~~~i~~~~Li~~W~~ 444 (724)
+ . +.+.+..++.... ...+..++..||++.+..+..++ ++.....+....+.+....
T Consensus 255 ~a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~ 320 (387)
T 2v1u_A 255 IAERRREERVRREHVYSARAEIE--------------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKE 320 (387)
T ss_dssp HHHHTTCSCBCHHHHHHHHHHHH--------------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHH
T ss_pred HHHHcCCCCcCHHHHHHHHHHHh--------------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 1 1 5666666665432 12356678889988887776665 4432225555544443320
Q ss_pred cccccccccccccccHHHHHHHHHHHHHHHHhhccccc
Q 004895 445 LRYDKGLGLFRNVYTLEAARNRVDALIDNLKASCLLLD 482 (724)
Q Consensus 445 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 482 (724)
..+..| ... . +...+.++++.|...|++..
T Consensus 321 --~~~~~~-~~~-~----~~~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 321 --LTSTLG-LEH-V----TLRRVSGIISELDMLGIVKS 350 (387)
T ss_dssp --HHHHTT-CCC-C----CHHHHHHHHHHHHHTTSEEE
T ss_pred --HHHhcC-CCC-C----CHHHHHHHHHHHHhCCCeEE
Confidence 000112 111 1 12344567788888888864
No 92
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.41 E-value=7e-13 Score=148.00 Aligned_cols=143 Identities=15% Similarity=0.170 Sum_probs=120.0
Q ss_pred eEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcEEEcCCc
Q 004895 530 IAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQTLCLDGW 608 (724)
Q Consensus 530 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~ 608 (724)
++++++++.+..+|.... ++|+.|.+ +.+....+++..|.++++|++|++++|.+..+ |..++++.+|++|+|++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNI--SQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEEC--CSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEEC--CCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 578899999998887655 89999999 44556677777899999999999999999966 778999999999999999
Q ss_pred ccCCcccccCCCCCcEEEccCCcCcc--cchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCC--cEEEccCCCC
Q 004895 609 RLEDIAIVGQLKKLEILSLRGAEIKQ--LPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRL--EELYMGDSFS 680 (724)
Q Consensus 609 ~l~~~~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L--~~L~l~~~~~ 680 (724)
.++.++.. .+++|++|++++|.++. +|..++++++|++|++++| .+.. ..++.+++| ++|++++|..
T Consensus 80 ~l~~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVKISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCEEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred ceeecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch---hhccccccceeeEEEeecccc
Confidence 99885444 89999999999999985 5789999999999999995 4444 336778888 9999988743
No 93
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=6.1e-13 Score=138.27 Aligned_cols=175 Identities=14% Similarity=0.161 Sum_probs=106.7
Q ss_pred cCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcC-----------------
Q 004895 527 KGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRF----------------- 587 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----------------- 587 (724)
.++++|++++|.+..++. ...+++|+.|.+. .+....+++ +..+++|++|++++|.+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls--~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n 109 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLS--SNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANN 109 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECT--TSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSS
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECC--CCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCC
Confidence 355556665555554432 1245555555552 222222222 44555555555555544
Q ss_pred --CCCCccccCCCCCcEEEcCCcccCCc--ccccCCCCCcEEEccCCcCcccc-hhh-hcCCCCCeEccCCCCCCcccCh
Q 004895 588 --SPLPSSLGRLINLQTLCLDGWRLEDI--AIVGQLKKLEILSLRGAEIKQLP-LQI-GQLTRLQLLDLSNCSSLVVIAP 661 (724)
Q Consensus 588 --~~lp~~i~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp-~~i-~~l~~L~~L~l~~~~~l~~~~~ 661 (724)
..+|. ..+.+|++|++++|.++.. ..++.+++|++|++++|.++.++ ..+ ..+++|++|++++| .+..++.
T Consensus 110 ~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 186 (317)
T 3o53_A 110 NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG 186 (317)
T ss_dssp CCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC
T ss_pred ccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC-cCccccc
Confidence 43332 2356677777777777762 46777788888888888777653 344 36788888888874 4565543
Q ss_pred HHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccccc
Q 004895 662 NVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 662 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~ 719 (724)
...+++|++|++++|.. .+ .+ ..+..+++|+.|++++|.++.+|..+
T Consensus 187 --~~~l~~L~~L~Ls~N~l-----~~-l~---~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 187 --QVVFAKLKTLDLSSNKL-----AF-MG---PEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp --CCCCTTCCEEECCSSCC-----CE-EC---GGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred --ccccccCCEEECCCCcC-----Cc-ch---hhhcccCcccEEECcCCcccchhhHh
Confidence 34578888888887642 21 11 23566788999999999998888654
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.41 E-value=6.5e-13 Score=137.64 Aligned_cols=179 Identities=16% Similarity=0.060 Sum_probs=115.3
Q ss_pred cCceEEeccCCCcccC-CCc---ccCCCccEEEEeccccccc--ccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCC
Q 004895 527 KGPIAISLPYRDIQEL-PER---LECPQLKLFLLFAKYDSTL--QISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLIN 599 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~-~~~---~~~~~Lr~L~l~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~ 599 (724)
.++++|++++|.+... |.. ..+++|++|.+..+..... .++...+..+++|++|++++|.+..+| ..++.+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 4588888888877543 333 4577888888843221110 011223446788888888888887554 57778888
Q ss_pred CcEEEcCCcccCC---c---ccccCCCCCcEEEccCCcCcccchh----hhcCCCCCeEccCCCCCCcccChHHhhCC--
Q 004895 600 LQTLCLDGWRLED---I---AIVGQLKKLEILSLRGAEIKQLPLQ----IGQLTRLQLLDLSNCSSLVVIAPNVISKL-- 667 (724)
Q Consensus 600 L~~L~L~~~~l~~---~---~~~~~l~~L~~L~l~~~~i~~lp~~----i~~l~~L~~L~l~~~~~l~~~~~~~i~~l-- 667 (724)
|++|+|++|.+.. . ..++.+++|++|++++|.++.+|.. +..+++|++|++++| .+....|..++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccC
Confidence 8888888887543 1 2236778888888888888766553 467788888888884 4555523335555
Q ss_pred -CCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 668 -SRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 668 -~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
++|++|++++|... ..+..+ .++|+.|+++.|.++.+|.
T Consensus 250 ~~~L~~L~Ls~N~l~------~lp~~~-----~~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 250 SSALNSLNLSFAGLE------QVPKGL-----PAKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp CTTCCCEECCSSCCC------SCCSCC-----CSCCSCEECCSCCCCSCCC
T ss_pred cCcCCEEECCCCCCC------chhhhh-----cCCCCEEECCCCcCCCCch
Confidence 58888888876432 112211 1577777777777776654
No 95
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.40 E-value=2.1e-13 Score=141.39 Aligned_cols=187 Identities=13% Similarity=0.037 Sum_probs=137.6
Q ss_pred cCceEEeccCCCccc-----CCCcccCCCccEEEEecccccccccchhhh-cCCCCceEEEcCCCcCCC-CC----cccc
Q 004895 527 KGPIAISLPYRDIQE-----LPERLECPQLKLFLLFAKYDSTLQISDHFF-EGTEELKVLDFTGIRFSP-LP----SSLG 595 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~-----~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~-lp----~~i~ 595 (724)
..++++.+....+.. +.....+++|+.|.+..+ .-....+..++ ..+++|+.|++++|.+.. .| ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 356777777665532 222335678999999322 22233444333 889999999999999984 33 3456
Q ss_pred CCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCcc---cchh--hhcCCCCCeEccCCCCCCcccChH---Hhh
Q 004895 596 RLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQ---LPLQ--IGQLTRLQLLDLSNCSSLVVIAPN---VIS 665 (724)
Q Consensus 596 ~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~---lp~~--i~~l~~L~~L~l~~~~~l~~~~~~---~i~ 665 (724)
.+++|++|+|++|.+.. +..++.+++|++|++++|.+.. +|.. +..+++|++|++++| .++.++.. .++
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~ 221 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPTGVCAALAA 221 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchHHHHHHHHh
Confidence 79999999999999987 3678999999999999998764 4433 478999999999995 56555432 357
Q ss_pred CCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccccccccc
Q 004895 666 KLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIWS 720 (724)
Q Consensus 666 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~~ 720 (724)
.+++|++|++++|. +.+..+..+..+..+++|+.|+++.|.++.+|..++
T Consensus 222 ~l~~L~~L~Ls~N~-----l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~ 271 (310)
T 4glp_A 222 AGVQPHSLDLSHNS-----LRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP 271 (310)
T ss_dssp HTCCCSSEECTTSC-----CCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC
T ss_pred cCCCCCEEECCCCC-----CCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc
Confidence 89999999999974 343334455566666899999999999999987653
No 96
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.40 E-value=2.3e-12 Score=145.27 Aligned_cols=103 Identities=23% Similarity=0.261 Sum_probs=57.0
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTL 603 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L 603 (724)
+.++++|++++|.+..++. ...+++|+.|.+ +.+....+++..|.++++|++|++++|.+..+|.. .+.+|++|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~L--s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L 126 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRL--SHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHL 126 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEEC--CSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEEC--CCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEE
Confidence 3456666666666655542 235666666666 23334444445556666666666666666655544 55556666
Q ss_pred EcCCcccCC---cccccCCCCCcEEEccCCcC
Q 004895 604 CLDGWRLED---IAIVGQLKKLEILSLRGAEI 632 (724)
Q Consensus 604 ~L~~~~l~~---~~~~~~l~~L~~L~l~~~~i 632 (724)
++++|.++. |..++++++|++|++++|.+
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l 158 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence 666655544 13455555555555555543
No 97
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.40 E-value=6.6e-13 Score=121.40 Aligned_cols=129 Identities=22% Similarity=0.195 Sum_probs=98.2
Q ss_pred CCCceEEEcCCCcCC--CCCccccCCCCCcEEEcCCcccCCcccccCCCCCcEEEccCCcCcc-cchhhhcCCCCCeEcc
Q 004895 574 TEELKVLDFTGIRFS--PLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQ-LPLQIGQLTRLQLLDL 650 (724)
Q Consensus 574 l~~L~~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~i~~-lp~~i~~l~~L~~L~l 650 (724)
.++|+.|++++|.+. .+|..++.+++|++|++++|.++....++.+++|++|++++|.++. +|..+..+++|++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 467888888888888 7888888888999999998888877778888899999999998886 7777778889999999
Q ss_pred CCCCCCcccC-hHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEee
Q 004895 651 SNCSSLVVIA-PNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEID 708 (724)
Q Consensus 651 ~~~~~l~~~~-~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~ 708 (724)
++| .+..++ +..++.+++|++|++++|. +.+..+.....+..+++|+.|+++
T Consensus 96 s~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-----l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGN-KIKDLSTIEPLKKLENLKSLDLFNCE-----VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTS-CCCSHHHHGGGGGCTTCCEEECTTCG-----GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCC-cCCChHHHHHHhhCCCCCEEeCcCCc-----ccchHHHHHHHHHHCCCcccccCC
Confidence 884 466653 2457888899999988863 222222112345667788888765
No 98
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=9.3e-13 Score=155.61 Aligned_cols=181 Identities=20% Similarity=0.235 Sum_probs=139.0
Q ss_pred ccCceEEeccCCCcccCCC--cccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPE--RLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~--~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~ 602 (724)
+.++++|++++|.+..++. ...+++|+.|++ ..+.....+++..|.++++|++|+|++|.+..+ |..++++.+|++
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdL-s~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLEL-GSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEE-CTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeC-CCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 6789999999999877642 347899999999 333345567677789999999999999999855 889999999999
Q ss_pred EEcCCcccCC--ccc--ccCCCCCcEEEccCCcCccc--chhhhcCCCCCeEccCCCCCCcccChHHhhCC--CCCcEEE
Q 004895 603 LCLDGWRLED--IAI--VGQLKKLEILSLRGAEIKQL--PLQIGQLTRLQLLDLSNCSSLVVIAPNVISKL--SRLEELY 674 (724)
Q Consensus 603 L~L~~~~l~~--~~~--~~~l~~L~~L~l~~~~i~~l--p~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l--~~L~~L~ 674 (724)
|+|++|.++. +.. ++++++|++|++++|.++.+ |..++++++|++|++++| .+....+..++.+ ++|+.|+
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQGKTLSFFS 180 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHHHCSSCCCE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC-cCCeeCHHHcccccCCccceEE
Confidence 9999999886 443 89999999999999998865 357899999999999984 5556555567777 8999999
Q ss_pred ccCCCCccccccCCccchHHhhc---CCCCCcEEEeeccccc
Q 004895 675 MGDSFSQWDKVEGGSNASLAELK---GLSKLTTLEIDVRDAE 713 (724)
Q Consensus 675 l~~~~~~~~~~~~~~~~~l~~L~---~L~~L~~L~l~~n~~~ 713 (724)
++.|... +..+..+..+. ...+|+.|+++.|.+.
T Consensus 181 L~~n~l~-----~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 181 LAANSLY-----SRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp ECCSBSC-----CCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred CCCCccc-----cccccchhhcCCccccCceeEEecCCCcCc
Confidence 9887432 22222222211 1125999999999764
No 99
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.40 E-value=3.4e-12 Score=139.39 Aligned_cols=166 Identities=16% Similarity=0.139 Sum_probs=99.3
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcC
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLD 606 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 606 (724)
.++++|++++|.+..++ ...+++|+.|.+.. +....++ +.++++|++|++++|.+..+| ++.+++|++|+++
T Consensus 64 ~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~--N~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~ 135 (457)
T 3bz5_A 64 TGLTKLICTSNNITTLD-LSQNTNLTYLACDS--NKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCA 135 (457)
T ss_dssp TTCSEEECCSSCCSCCC-CTTCTTCSEEECCS--SCCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECT
T ss_pred CCCCEEEccCCcCCeEc-cccCCCCCEEECcC--CCCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECC
Confidence 45555666555555543 33455555555521 2222222 444555555555555555443 4445555555555
Q ss_pred CcccCCcc---------------------cccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhh
Q 004895 607 GWRLEDIA---------------------IVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVIS 665 (724)
Q Consensus 607 ~~~l~~~~---------------------~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~ 665 (724)
+|.++.++ .++.+++|++|++++|.++.+| +..+++|+.|++++| .+..++ ++
T Consensus 136 ~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N-~l~~~~---l~ 209 (457)
T 3bz5_A 136 RNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTN-NITKLD---LN 209 (457)
T ss_dssp TSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSS-CCSCCC---CT
T ss_pred CCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec--cccCCCCCEEECcCC-cCCeec---cc
Confidence 55443321 3556677777777777777766 667777777777773 455552 67
Q ss_pred CCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 666 KLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 666 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
.+++|++|++++|. +.+ +. +..+++|+.|+++.|.++.+|.
T Consensus 210 ~l~~L~~L~Ls~N~-----l~~-----ip-~~~l~~L~~L~l~~N~l~~~~~ 250 (457)
T 3bz5_A 210 QNIQLTFLDCSSNK-----LTE-----ID-VTPLTQLTYFDCSVNPLTELDV 250 (457)
T ss_dssp TCTTCSEEECCSSC-----CSC-----CC-CTTCTTCSEEECCSSCCSCCCC
T ss_pred cCCCCCEEECcCCc-----ccc-----cC-ccccCCCCEEEeeCCcCCCcCH
Confidence 77888888887753 332 11 6678999999999999887763
No 100
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=3.2e-11 Score=128.89 Aligned_cols=295 Identities=15% Similarity=0.130 Sum_probs=174.1
Q ss_pred cccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccC-CCeEEEEEEecCCChHHHHHHHH
Q 004895 159 YNIFNSRKKIFQDVIEALK----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV-FDKVVMAEITKNPDAQKIQGELA 233 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~l~~~i~ 233 (724)
+..|+||+++++.+.+++. ....+.+.|+|++|+||||||+.+++....... -..++|+++....+...++..++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~ 98 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLL 98 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHH
Confidence 3678999999999999886 345678999999999999999999998754311 12467888777777888888888
Q ss_pred HhhCCCCCCCc-hhHHHHHHHHHHHhc-CCcEEEEEcccccccc------ccccccccCCCCcCCCCCCCCCcEEEEEec
Q 004895 234 SDLGMNFDSND-LIYHRAKQLCQRLKK-EKRVLIILDNIWTKLE------LDKIGIPYGDVDEKDKNDDPRRCTIILTSR 305 (724)
Q Consensus 234 ~~l~~~~~~~~-~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 305 (724)
..++....... ........+.+.+.. +++.+||||+++.... +..+...... . ...+..+|+||+
T Consensus 99 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~------~-~~~~~~~I~~~~ 171 (386)
T 2qby_A 99 ESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSE------V-NKSKISFIGITN 171 (386)
T ss_dssp TTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHS------C-CC--EEEEEEES
T ss_pred HHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhh------c-CCCeEEEEEEEC
Confidence 88876533221 123344555555543 3489999999976432 1111111100 0 123556777887
Q ss_pred ccchh-----hh-hcCCCceEecCCCCHHHHHHHHHHHhCCCC-CCCCchhHHHHHHHHhC---CchhHH-HHHHHHhc-
Q 004895 306 SRDLL-----CI-DMNSQKMFWIDALSEEEALQLFEKIVGEST-KASDFRPLAEEIVGKCG---GLPVAL-STVANALK- 373 (724)
Q Consensus 306 ~~~v~-----~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c~---GlPLai-~~~~~~l~- 373 (724)
..... .. .......+.+++++.++..+++.+.+.... ...-..+..+.+++.++ |.|..+ .++.....
T Consensus 172 ~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~ 251 (386)
T 2qby_A 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEI 251 (386)
T ss_dssp CGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 65421 00 011124899999999999999998764111 11222567788888888 999844 33322221
Q ss_pred ----C--C-CHHHHHHHHHHHhcCccccccCCCcccchhhHhhhhhcHHHHHHHHHhhccCCC-C-CcccHHHHHHHHhh
Q 004895 374 ----N--K-SPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDDEAKSLFLLCGLHRE-G-RPIHVHYLLRYVMG 444 (724)
Q Consensus 374 ----~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp~-~-~~i~~~~Li~~W~~ 444 (724)
+ . +.+.+..++.... ...+...+..||+..+..+..++..-+ + ..+....+.+...
T Consensus 252 a~~~~~~~i~~~~v~~a~~~~~--------------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~- 316 (386)
T 2qby_A 252 AERMKDTKVKEEYVYMAKEEIE--------------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYL- 316 (386)
T ss_dssp HHHTTCSSCCHHHHHHHHHHHH--------------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHH-
T ss_pred HHhcCCCccCHHHHHHHHHHHh--------------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHH-
Confidence 1 1 5555555554421 134566777888888877776663211 1 1344444433222
Q ss_pred cccccccccccccccHHHHHHHHHHHHHHHHhhccccc
Q 004895 445 LRYDKGLGLFRNVYTLEAARNRVDALIDNLKASCLLLD 482 (724)
Q Consensus 445 ~~~~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~ 482 (724)
..++..| +.. . ....+..+++.|...+++..
T Consensus 317 -~~~~~~g-~~~-~----~~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 317 -NICKKLG-VEA-V----TQRRVSDIINELDMVGILTA 347 (386)
T ss_dssp -HHHHHHT-CCC-C----CHHHHHHHHHHHHHHTSEEE
T ss_pred -HHHHhcC-CCC-C----CHHHHHHHHHHHHhCCCEEE
Confidence 0000111 000 0 11334556777888898853
No 101
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=7.8e-13 Score=156.28 Aligned_cols=173 Identities=17% Similarity=0.183 Sum_probs=137.3
Q ss_pred EEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCC-CC-CccccCCCCCcEEEcCCc
Q 004895 531 AISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFS-PL-PSSLGRLINLQTLCLDGW 608 (724)
Q Consensus 531 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l-p~~i~~l~~L~~L~L~~~ 608 (724)
..+.++++++.+|. -.++++.|++ +.+....+++..|.++++|++|++++|... .+ |..++++.+|++|+|++|
T Consensus 8 ~~dcs~~~L~~vP~--lp~~l~~LdL--s~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLTQVPQ--VLNTTERLLL--SFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSSCCCS--SCTTCCEEEE--ESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCCCCCC--CCCCcCEEEC--CCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 45566778888887 5689999999 344556666667899999999999999544 55 778999999999999999
Q ss_pred ccCC--cccccCCCCCcEEEccCCcCcc-cchh--hhcCCCCCeEccCCCCCCccc-ChHHhhCCCCCcEEEccCCCCcc
Q 004895 609 RLED--IAIVGQLKKLEILSLRGAEIKQ-LPLQ--IGQLTRLQLLDLSNCSSLVVI-APNVISKLSRLEELYMGDSFSQW 682 (724)
Q Consensus 609 ~l~~--~~~~~~l~~L~~L~l~~~~i~~-lp~~--i~~l~~L~~L~l~~~~~l~~~-~~~~i~~l~~L~~L~l~~~~~~~ 682 (724)
.+.. |..++++++|++|++++|.++. +|.. +.++++|++|++++|. +... ++..+++|++|++|++++|.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~--- 159 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ--- 159 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC---
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc---
Confidence 9887 5789999999999999999884 5665 8999999999999954 4444 34568999999999999864
Q ss_pred ccccCCccchHHhhcCCCCCcEEEeecccccc
Q 004895 683 DKVEGGSNASLAELKGLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 683 ~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~ 714 (724)
+.+..+..+..+.. ++|+.|+++.|.+..
T Consensus 160 --i~~~~~~~l~~l~~-~~L~~L~L~~n~l~~ 188 (844)
T 3j0a_A 160 --IFLVCEHELEPLQG-KTLSFFSLAANSLYS 188 (844)
T ss_dssp --CCCCCSGGGHHHHH-CSSCCCEECCSBSCC
T ss_pred --CCeeCHHHcccccC-CccceEECCCCcccc
Confidence 33333444554433 689999999998654
No 102
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.40 E-value=2.9e-13 Score=141.99 Aligned_cols=176 Identities=20% Similarity=0.200 Sum_probs=116.2
Q ss_pred ccCceEEeccCCCccc--CCCc-ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCC-cCC--CCCccccCCCC
Q 004895 526 QKGPIAISLPYRDIQE--LPER-LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGI-RFS--PLPSSLGRLIN 599 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~--~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~--~lp~~i~~l~~ 599 (724)
..++++|++++|.+.. ++.. ..+++|+.|.+.. +.........+..+++|+.|++++| .++ .+|..+..+++
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~--~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~ 169 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG--LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT--CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTT
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcC--cccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCC
Confidence 3577778887776643 3322 2577888888732 2233223334666788888888887 566 35666777888
Q ss_pred CcEEEcCCc-ccCC---cccccCCC-CCcEEEccCCc--C--cccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCC
Q 004895 600 LQTLCLDGW-RLED---IAIVGQLK-KLEILSLRGAE--I--KQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRL 670 (724)
Q Consensus 600 L~~L~L~~~-~l~~---~~~~~~l~-~L~~L~l~~~~--i--~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L 670 (724)
|++|++++| .++. +..+..++ +|++|++++|. + ..+|..+.++++|++|++++|..++...+..++.+++|
T Consensus 170 L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L 249 (336)
T 2ast_B 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 249 (336)
T ss_dssp CCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTC
T ss_pred CCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCC
Confidence 888888888 6764 34567777 88888888873 4 35677777788888888888654544333457778888
Q ss_pred cEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecc
Q 004895 671 EELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVR 710 (724)
Q Consensus 671 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n 710 (724)
++|++++|. +..+..+..+.++++|+.|++++|
T Consensus 250 ~~L~l~~~~-------~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 250 QHLSLSRCY-------DIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CEEECTTCT-------TCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CEeeCCCCC-------CCCHHHHHHHhcCCCCCEEeccCc
Confidence 888887763 112334455667778888888776
No 103
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.39 E-value=1.8e-11 Score=130.81 Aligned_cols=244 Identities=15% Similarity=0.065 Sum_probs=159.2
Q ss_pred ccccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhcc----C--CCeEEEEEEecCC-ChHHH
Q 004895 160 NIFNSRKKIFQDVIEALK----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDN----V--FDKVVMAEITKNP-DAQKI 228 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~--F~~~~wv~vs~~~-~~~~l 228 (724)
..++||+++++.+.+++. ....+.+.|+|++|+||||||+.+++...... . ...++|++++... +...+
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 99 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAV 99 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHH
Confidence 678999999999987765 34567899999999999999999999864321 1 2347788887777 88888
Q ss_pred HHHHHHhh-CCCCCCC-chhHHHHHHHHHHHhcCCcEEEEEcccccccc--cccc-ccccCCCCcCCCCCCCCCcEEEEE
Q 004895 229 QGELASDL-GMNFDSN-DLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--LDKI-GIPYGDVDEKDKNDDPRRCTIILT 303 (724)
Q Consensus 229 ~~~i~~~l-~~~~~~~-~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l-~~~~~~~~~~~~~~~~~~s~ilvT 303 (724)
+..++..+ +...... .........+...+.. ++.+|||||++.... +... ...+.. ...+..||+|
T Consensus 100 ~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~~~vlilDEi~~l~~~~~~~~~l~~l~~--------~~~~~~iI~~ 170 (384)
T 2qby_B 100 LSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIYLDEVDTLVKRRGGDIVLYQLLR--------SDANISVIMI 170 (384)
T ss_dssp HHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-SCEEEEEETTHHHHHSTTSHHHHHHHHT--------SSSCEEEEEE
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-CCCEEEEECHHHhccCCCCceeHHHHhc--------CCcceEEEEE
Confidence 88988887 3322211 1123445566666654 445999999976532 1121 112211 1157789999
Q ss_pred ecccch----h-hhhcCCCceEecCCCCHHHHHHHHHHHhCC-CCCCCCchhHHHHHHHHhC---Cchh-HHHHHHHHhc
Q 004895 304 SRSRDL----L-CIDMNSQKMFWIDALSEEEALQLFEKIVGE-STKASDFRPLAEEIVGKCG---GLPV-ALSTVANALK 373 (724)
Q Consensus 304 tR~~~v----~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~-~~~~~~l~~~~~~I~~~c~---GlPL-ai~~~~~~l~ 373 (724)
|+.... . .........+.+++++.++..++|...+.. .....--++..+.|++.|+ |.|. |+..+-....
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 887532 1 111111238999999999999999998641 1111122467788999998 9887 4444333321
Q ss_pred ---C--C-CHHHHHHHHHHHhcCccccccCCCcccchhhHhhhhhcHHHHHHHHHhhcc
Q 004895 374 ---N--K-SPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDDEAKSLFLLCGL 426 (724)
Q Consensus 374 ---~--~-~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~ 426 (724)
+ . +.+.+..+++... ...+..++..|+++.+..+..++.
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~--------------~~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE--------------QERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH--------------HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred HhcCCCccCHHHHHHHHHHHh--------------cchHHHHHHcCCHHHHHHHHHHHH
Confidence 1 2 6677777666532 134667788899888888777766
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.39 E-value=9.3e-13 Score=127.85 Aligned_cols=156 Identities=20% Similarity=0.267 Sum_probs=127.1
Q ss_pred ccCceEEeccCCCcccCCCc--ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc-ccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPER--LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS-LGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~ 602 (724)
+.++++|++.+|.+..++.. ..+++|+.|.+ ..+....++...|.++++|++|++++|.+..+|.. +..+.+|++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYL--GGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEEC--CCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence 56899999999999888753 37899999999 34456677888889999999999999999988764 689999999
Q ss_pred EEcCCcccCCc--ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 603 LCLDGWRLEDI--AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 603 L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
|++++|.++.. ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. .+.+++|+.|+++.|
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~l~~L~~~~n- 175 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPGIRYLSEWIN- 175 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------CCCTTTTHHHHHHHH-
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------ecCCCCHHHHHHHHH-
Confidence 99999999883 3478999999999999999988776 78899999999999532 245678888887764
Q ss_pred CccccccCCccchHHhh
Q 004895 680 SQWDKVEGGSNASLAEL 696 (724)
Q Consensus 680 ~~~~~~~~~~~~~l~~L 696 (724)
.+.|..+..++.+
T Consensus 176 ----~~~g~ip~~~~~l 188 (208)
T 2o6s_A 176 ----KHSGVVRNSAGSV 188 (208)
T ss_dssp ----HCTTTBBCTTSSB
T ss_pred ----hCCceeeccCccc
Confidence 3555555554443
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.39 E-value=2.5e-12 Score=143.18 Aligned_cols=157 Identities=17% Similarity=0.177 Sum_probs=85.9
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcC
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLD 606 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 606 (724)
.+++.|++++|.+..+| ..+++|+.|.+ +.+....+|. +.+ +|+.|++++|.++.+|. .+.+|++|+|+
T Consensus 80 ~~L~~L~Ls~N~l~~ip--~~l~~L~~L~L--s~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 148 (571)
T 3cvr_A 80 PQITVLEITQNALISLP--ELPASLEYLDA--CDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE---LPALLEYINAD 148 (571)
T ss_dssp TTCSEEECCSSCCSCCC--CCCTTCCEEEC--CSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC---CCTTCCEEECC
T ss_pred CCCCEEECcCCCCcccc--cccCCCCEEEc--cCCCCCCcch--hhc--CCCEEECCCCcCCCCCC---cCccccEEeCC
Confidence 45666666666666555 23556666666 2223333443 222 56666666666666655 45666666666
Q ss_pred CcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCC-------cEEEccCCC
Q 004895 607 GWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRL-------EELYMGDSF 679 (724)
Q Consensus 607 ~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L-------~~L~l~~~~ 679 (724)
+|.++.++. .+++|++|++++|.++.+|. +. ++|++|++++ +.++.+|. +.. +| +.|++++|.
T Consensus 149 ~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~-N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N~ 218 (571)
T 3cvr_A 149 NNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVST-NLLESLPA--VPV--RNHHSEETEIFFRCRENR 218 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCS-SCCSSCCC--CC----------CCEEEECCSSC
T ss_pred CCccCcCCC--cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcC-CCCCchhh--HHH--hhhcccccceEEecCCCc
Confidence 666665333 45566666666666666665 44 6666666666 34555544 332 44 666666653
Q ss_pred CccccccCCccchHHhhcCCCCCcEEEeeccccc
Q 004895 680 SQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 680 ~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~ 713 (724)
+ + ..+. .+.++++|+.|++++|.++
T Consensus 219 l-----~-~lp~---~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 219 I-----T-HIPE---NILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp C-----C-CCCG---GGGGSCTTEEEECCSSSCC
T ss_pred c-----e-ecCH---HHhcCCCCCEEEeeCCcCC
Confidence 2 1 1122 2334666777777777664
No 106
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.39 E-value=9.8e-13 Score=123.97 Aligned_cols=135 Identities=16% Similarity=0.233 Sum_probs=91.9
Q ss_pred hcCCCCceEEEcCCCcCCCCCccccCCC-CCcEEEcCCcccCCcccccCCCCCcEEEccCCcCcccchhh-hcCCCCCeE
Q 004895 571 FEGTEELKVLDFTGIRFSPLPSSLGRLI-NLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQI-GQLTRLQLL 648 (724)
Q Consensus 571 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~-~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i-~~l~~L~~L 648 (724)
+.++..|+.|++++|.+..+|. +..+. +|++|++++|.++.++.++.+++|++|++++|.++.+|+.+ ..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 4456777888888887777754 44444 78888888887777777777888888888888887777654 778888888
Q ss_pred ccCCCCCCcccCh-HHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccc
Q 004895 649 DLSNCSSLVVIAP-NVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDA 712 (724)
Q Consensus 649 ~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~ 712 (724)
++++| .+..+|. ..++.+++|++|++++|.. ..........+..+++|+.|+++.|..
T Consensus 94 ~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i-----~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 94 ILTNN-SLVELGDLDPLASLKSLTYLCILRNPV-----TNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp ECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGG-----GGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ECCCC-cCCcchhhHhhhcCCCCCEEEecCCCC-----CCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 88774 4566554 2467788888888877642 111111112355667788888877764
No 107
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=2.7e-13 Score=140.95 Aligned_cols=168 Identities=17% Similarity=0.138 Sum_probs=102.9
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcEEE
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQTLC 604 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~ 604 (724)
..++++|++++|.+..++. .++|+.|.+. .+....++. ..+++|+.|++++|.+..++ ..++.+.+|++|+
T Consensus 79 l~~L~~L~Ls~n~l~~l~~---~~~L~~L~l~--~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 150 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELLV---GPSIETLHAA--NNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (317)
T ss_dssp CTTCCEEECCSSEEEEEEE---CTTCCEEECC--SSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEE
T ss_pred cCCCCEEECcCCccccccC---CCCcCEEECC--CCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEE
Confidence 3567777777777665542 3677777772 233333332 23566777777777777553 3566677777777
Q ss_pred cCCcccCC--cccc-cCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCc
Q 004895 605 LDGWRLED--IAIV-GQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQ 681 (724)
Q Consensus 605 L~~~~l~~--~~~~-~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 681 (724)
+++|.++. +..+ ..+++|++|++++|.++.+|.. ..+++|++|++++ +.+..+|+. +..+++|++|++++|...
T Consensus 151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~-~~~l~~L~~L~L~~N~l~ 227 (317)
T 3o53_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSS-NKLAFMGPE-FQSAAGVTWISLRNNKLV 227 (317)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCS-SCCCEECGG-GGGGTTCSEEECTTSCCC
T ss_pred CCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCC-CcCCcchhh-hcccCcccEEECcCCccc
Confidence 77777665 2333 3567777777777777766543 3467777777777 355666655 667777777777765321
Q ss_pred cccccCCccchHHhhcCCCCCcEEEeeccccc
Q 004895 682 WDKVEGGSNASLAELKGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 682 ~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~ 713 (724)
. .+ ..+..+++|+.|++++|.+.
T Consensus 228 ~------l~---~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 228 L------IE---KALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp E------EC---TTCCCCTTCCEEECTTCCCB
T ss_pred c------hh---hHhhcCCCCCEEEccCCCcc
Confidence 1 11 23455667777777777665
No 108
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.38 E-value=7.8e-13 Score=152.67 Aligned_cols=153 Identities=16% Similarity=0.196 Sum_probs=98.2
Q ss_pred ccCceEEeccCCCcccCCCc-ccCCCccEEEEecc--cccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPER-LECPQLKLFLLFAK--YDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~-~~~~~Lr~L~l~~~--~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~ 602 (724)
...++++++..+.+...+.. ....+|+.+.+... ......++...|..+..|+.|+|++|.+..+|..++++.+|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 45678888888877665432 24444555544211 1112235667788999999999999999999999999999999
Q ss_pred EEcCCcccCC-cccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCC
Q 004895 603 LCLDGWRLED-IAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFS 680 (724)
Q Consensus 603 L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~ 680 (724)
|+|++|.++. |..+++|++|++|+|++|.++.+|..++.|++|++|+|++| .+..+|.. |+.|++|++|++++|.+
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSS-TTSCTTCCCEECTTSCC
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCC-CCCccChh-hhcCCCccEEeCCCCcc
Confidence 9999999988 67899999999999999999999999999999999999994 67888765 89999999999999753
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.37 E-value=7.3e-13 Score=138.92 Aligned_cols=176 Identities=19% Similarity=0.289 Sum_probs=138.3
Q ss_pred cCceEEeccCCCcccCC-CcccCCCccEEEEeccccccc-ccchhhhcCCCCceEEEcCCCcCC-CCCccccCCCCCcEE
Q 004895 527 KGPIAISLPYRDIQELP-ERLECPQLKLFLLFAKYDSTL-QISDHFFEGTEELKVLDFTGIRFS-PLPSSLGRLINLQTL 603 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~-~~~~~~~Lr~L~l~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~-~lp~~i~~l~~L~~L 603 (724)
.+++.+.+.+|.+...+ ....+++|+.|.+..+ ... ......+.++++|+.|++++|.+. ..|..++.+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~--~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS--VIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTC--EECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEE
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCC--CcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEE
Confidence 67889999988876553 4457899999999332 222 213456889999999999999988 678889999999999
Q ss_pred EcCCc-ccCC---cccccCCCCCcEEEccCC-cCcc--cchhhhcCC-CCCeEccCCCC-CCc-ccChHHhhCCCCCcEE
Q 004895 604 CLDGW-RLED---IAIVGQLKKLEILSLRGA-EIKQ--LPLQIGQLT-RLQLLDLSNCS-SLV-VIAPNVISKLSRLEEL 673 (724)
Q Consensus 604 ~L~~~-~l~~---~~~~~~l~~L~~L~l~~~-~i~~--lp~~i~~l~-~L~~L~l~~~~-~l~-~~~~~~i~~l~~L~~L 673 (724)
++++| .++. +..+..+++|++|++++| .++. +|..+..++ +|++|++++|. .+. ...+..++.+++|++|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 99999 6775 355889999999999999 9984 788899999 99999999974 343 2234457899999999
Q ss_pred EccCCCCccccccCCccchHHhhcCCCCCcEEEeeccc
Q 004895 674 YMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRD 711 (724)
Q Consensus 674 ~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~ 711 (724)
++++|.. ++ ...+..+.++++|+.|++++|.
T Consensus 228 ~l~~~~~----l~---~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 228 DLSDSVM----LK---NDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ECTTCTT----CC---GGGGGGGGGCTTCCEEECTTCT
T ss_pred eCCCCCc----CC---HHHHHHHhCCCCCCEeeCCCCC
Confidence 9999742 11 1234466778999999999985
No 110
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.37 E-value=1.5e-12 Score=146.76 Aligned_cols=145 Identities=21% Similarity=0.260 Sum_probs=120.8
Q ss_pred CceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcEEEcC
Q 004895 528 GPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQTLCLD 606 (724)
Q Consensus 528 ~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~ 606 (724)
..+++++++++++.+|.... ++|+.|.+ +.+....+++..|.++++|++|++++|.+..+ |..++.+.+|++|+|+
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~L--s~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSL--SQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEEC--CSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEEC--CCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 44889999999999987553 89999999 45556677777899999999999999999966 6789999999999999
Q ss_pred CcccCCcccccCCCCCcEEEccCCcCcccc--hhhhcCCCCCeEccCCCCCCcccChHHhhCCCCC--cEEEccCCCC
Q 004895 607 GWRLEDIAIVGQLKKLEILSLRGAEIKQLP--LQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRL--EELYMGDSFS 680 (724)
Q Consensus 607 ~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L--~~L~l~~~~~ 680 (724)
+|.++.++.. .+++|++|++++|.++.+| ..++++++|++|++++| .+.... ++.+++| ++|++++|..
T Consensus 109 ~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 109 HNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-ccccCc---hhhhhhceeeEEEeecccc
Confidence 9999985444 8999999999999999764 78999999999999994 455432 4555666 9999998753
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.37 E-value=3.1e-12 Score=142.34 Aligned_cols=166 Identities=19% Similarity=0.240 Sum_probs=89.7
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcC
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLD 606 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 606 (724)
.+++.|++++|.+..+|... +++|+.|.+ +.+....+| ..+++|+.|++++|.++.+|. ++. +|++|+|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~L--s~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEI--TQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEEC--CSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEEC--cCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 35666666666666665433 356666666 222333444 234666666666666666665 444 66666666
Q ss_pred CcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCcccccc
Q 004895 607 GWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVE 686 (724)
Q Consensus 607 ~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~ 686 (724)
+|.++.++. .+++|++|++++|.++.+|. .+++|++|++++| .+..+|. ++ ++|+.|++++|.+..
T Consensus 129 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~~---- 194 (571)
T 3cvr_A 129 NNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLES---- 194 (571)
T ss_dssp SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCSS----
T ss_pred CCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCCc----
Confidence 666666333 55666666666666666665 4566666666663 4555544 33 666666666653221
Q ss_pred CCccchHH-hh-cCCCCCcEEEeeccccccccccc
Q 004895 687 GGSNASLA-EL-KGLSKLTTLEIDVRDAEMLRRIW 719 (724)
Q Consensus 687 ~~~~~~l~-~L-~~L~~L~~L~l~~n~~~~lp~~~ 719 (724)
.+. +. .| ...+.|+.|++++|.++.+|..+
T Consensus 195 --lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l 226 (571)
T 3cvr_A 195 --LPA-VPVRNHHSEETEIFFRCRENRITHIPENI 226 (571)
T ss_dssp --CCC-CC--------CCEEEECCSSCCCCCCGGG
T ss_pred --hhh-HHHhhhcccccceEEecCCCcceecCHHH
Confidence 111 11 11 11122366666666666666543
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.36 E-value=5.1e-12 Score=142.44 Aligned_cols=99 Identities=18% Similarity=0.226 Sum_probs=68.1
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
+.+++.|.+++|.+..+|. .+++|++|++. .+....+|. .+++|+.|++++|.++.+|. .+.+|++|++
T Consensus 60 ~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls--~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L 128 (622)
T 3g06_A 60 PAHITTLVIPDNNLTSLPA--LPPELRTLEVS--GNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWI 128 (622)
T ss_dssp CTTCSEEEECSCCCSCCCC--CCTTCCEEEEC--SCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEEC
T ss_pred CCCCcEEEecCCCCCCCCC--cCCCCCEEEcC--CCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEEC
Confidence 4577778888777777766 56778888773 333444554 56778888888887777776 4667777777
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccch
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPL 637 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~ 637 (724)
++|.++.++. .+++|++|++++|.++.+|.
T Consensus 129 ~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~ 158 (622)
T 3g06_A 129 FGNQLTSLPV--LPPGLQELSVSDNQLASLPA 158 (622)
T ss_dssp CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC
T ss_pred CCCCCCcCCC--CCCCCCEEECcCCcCCCcCC
Confidence 7777766432 24677777887777776654
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.34 E-value=2.2e-12 Score=117.83 Aligned_cols=104 Identities=28% Similarity=0.391 Sum_probs=79.5
Q ss_pred hcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC-c-ccccCCCCCcEEEccCCcCcccc--hhhhcCCCCC
Q 004895 571 FEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED-I-AIVGQLKKLEILSLRGAEIKQLP--LQIGQLTRLQ 646 (724)
Q Consensus 571 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~ 646 (724)
+..+++|+.|++++|.+..+ ..++.+++|++|++++|.++. + ..++.+++|++|++++|.++.+| ..+..+++|+
T Consensus 38 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~ 116 (149)
T 2je0_A 38 TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLK 116 (149)
T ss_dssp CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCC
T ss_pred HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCC
Confidence 56677888888888888776 667788888888888888776 4 44556888888888888888765 6788888888
Q ss_pred eEccCCCCCCcccCh---HHhhCCCCCcEEEcc
Q 004895 647 LLDLSNCSSLVVIAP---NVISKLSRLEELYMG 676 (724)
Q Consensus 647 ~L~l~~~~~l~~~~~---~~i~~l~~L~~L~l~ 676 (724)
+|++++| .+...++ ..++.+++|+.|+++
T Consensus 117 ~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 117 SLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 8888884 5666665 567888888888764
No 114
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.34 E-value=3.5e-12 Score=145.86 Aligned_cols=151 Identities=23% Similarity=0.290 Sum_probs=127.3
Q ss_pred ccCceEEeccCCCcccCCCc--ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcE
Q 004895 526 QKGPIAISLPYRDIQELPER--LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQT 602 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~ 602 (724)
|..+++|++++|.++.++.. ..+++|+.|++ +.+....+++..|.++++|++|+|++|++..+|. .+.++.+|++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L--s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL--SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC--TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC--CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 67899999999999988743 47999999999 4556777888889999999999999999998875 5899999999
Q ss_pred EEcCCcccCCc--ccccCCCCCcEEEccCCcCcc--cchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCc----EEE
Q 004895 603 LCLDGWRLEDI--AIVGQLKKLEILSLRGAEIKQ--LPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLE----ELY 674 (724)
Q Consensus 603 L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~--lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~----~L~ 674 (724)
|+|++|.++.+ ..++++++|++|++++|.++. +|..+..+++|++|++++ +.+..+++..+..+.+++ .++
T Consensus 129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~l~~L~~l~~~~~~~~ 207 (635)
T 4g8a_A 129 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLD 207 (635)
T ss_dssp EECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTTCCCEEE
T ss_pred EECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccC-ccccccccccccchhhhhhhhhhhh
Confidence 99999999884 458999999999999999874 578899999999999999 567777776666655543 566
Q ss_pred ccCCC
Q 004895 675 MGDSF 679 (724)
Q Consensus 675 l~~~~ 679 (724)
++.|.
T Consensus 208 ls~n~ 212 (635)
T 4g8a_A 208 LSLNP 212 (635)
T ss_dssp CTTCC
T ss_pred cccCc
Confidence 66553
No 115
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.34 E-value=3.1e-12 Score=141.04 Aligned_cols=168 Identities=16% Similarity=0.122 Sum_probs=114.6
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcEEE
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQTLC 604 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~ 604 (724)
..++++|++++|.+..++. .++|+.|.+. .+....++. ..+++|+.|++++|.+..+ |..++.+++|++|+
T Consensus 79 l~~L~~L~Ls~N~l~~l~~---~~~L~~L~L~--~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 79 LSTLRTLDLNNNYVQELLV---GPSIETLHAA--NNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (487)
T ss_dssp CTTCCEEECCSSEEEEEEE---CTTCCEEECC--SSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred CCCCCEEEecCCcCCCCCC---CCCcCEEECc--CCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence 4577888888887766653 3778888772 333333333 2456788888888887755 55677788888888
Q ss_pred cCCcccCC--ccccc-CCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCc
Q 004895 605 LDGWRLED--IAIVG-QLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQ 681 (724)
Q Consensus 605 L~~~~l~~--~~~~~-~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~ 681 (724)
|++|.++. |..+. .+++|++|++++|.++.+|. ...+++|++|++++ +.+..+|+. ++.+++|+.|++++|.+.
T Consensus 151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~-~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPE-FQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCS-SCCCEECGG-GGGGTTCSEEECTTSCCC
T ss_pred CCCCCCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCC-CCCCCCCHh-HcCCCCccEEEecCCcCc
Confidence 88887776 34554 67788888888888777654 34577888888887 456677665 677888888888776422
Q ss_pred cccccCCccchHHhhcCCCCCcEEEeeccccc
Q 004895 682 WDKVEGGSNASLAELKGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 682 ~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~ 713 (724)
+ .+ ..+..+++|+.|++++|.+.
T Consensus 228 -----~-lp---~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 228 -----L-IE---KALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -----E-EC---TTCCCCTTCCEEECTTCCBC
T ss_pred -----c-cc---hhhccCCCCCEEEcCCCCCc
Confidence 1 11 23556677888888887765
No 116
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.34 E-value=7.2e-12 Score=139.77 Aligned_cols=174 Identities=12% Similarity=0.063 Sum_probs=118.1
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCC---CCccccCCCCCcEE
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSP---LPSSLGRLINLQTL 603 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---lp~~i~~l~~L~~L 603 (724)
.+++.+.+++|.+...+....+++|+.|.+. .+.........+.++++|+.|++++|.+.. +|..++.+++|++|
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls--~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L 379 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFS--NNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECC--SSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEE
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeE--CCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEE
Confidence 3577777777776555432467778888882 233333333446778888888888888874 45667788888888
Q ss_pred EcCCcccCC-cc--cccCCCCCcEEEccCCcCc-ccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 604 CLDGWRLED-IA--IVGQLKKLEILSLRGAEIK-QLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 604 ~L~~~~l~~-~~--~~~~l~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
++++|.++. ++ .+..+++|++|++++|.++ .+|..+. ++|++|++++| .+..+|.. +..+++|++|++++|.
T Consensus 380 ~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~-~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQ-VVKLEALQELNVASNQ 455 (520)
T ss_dssp ECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGG-GGGCTTCCEEECCSSC
T ss_pred ECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchh-hhcCCCCCEEECCCCc
Confidence 888888776 32 3677788888888888775 4455443 67888888884 56677665 5688888888888864
Q ss_pred CccccccCCccchHHhhcCCCCCcEEEeecccccc
Q 004895 680 SQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 680 ~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~ 714 (724)
... .+.. .+..+++|+.|++++|.+..
T Consensus 456 l~~------l~~~--~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 456 LKS------VPDG--IFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCC------CCTT--TTTTCTTCCEEECCSSCBCC
T ss_pred CCc------cCHH--HhccCCcccEEECcCCCCcc
Confidence 321 1111 35667788888888887654
No 117
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.33 E-value=1.5e-10 Score=123.97 Aligned_cols=319 Identities=12% Similarity=0.110 Sum_probs=188.6
Q ss_pred ccccchHHHHHHHHHHhcC----CCcc--EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHH
Q 004895 160 NIFNSRKKIFQDVIEALKD----DKLN--IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELA 233 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~~----~~~~--vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 233 (724)
..++||+++++.+..++.. .... .+.|+|++|+||||||+.+++....... ..++|++++...+...+...++
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~l~ 95 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGEIA 95 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHHHH
Confidence 5688999999999988863 3334 8999999999999999999988754211 2467788777778889999999
Q ss_pred HhhCCCCCCCc-hhHHHHHHHHHHHh-cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccch
Q 004895 234 SDLGMNFDSND-LIYHRAKQLCQRLK-KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL 309 (724)
Q Consensus 234 ~~l~~~~~~~~-~~~~~~~~l~~~l~-~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 309 (724)
..++...+... ........+...+. .+++.+|||||++... .+..+...+.... .....+..||++|+....
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~----~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 96 RSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEAD----KLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHH----HHSSCCEEEEEEESSTHH
T ss_pred HHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCC----CCCcCCEEEEEEECCchH
Confidence 98876543221 12334444544443 2568999999997652 2222211111100 000136678888876633
Q ss_pred hhh------hcCCCceEecCCCCHHHHHHHHHHHhCCCC-CCCCchhHHHHHHHHh---------CCchhHHHHHHHHhc
Q 004895 310 LCI------DMNSQKMFWIDALSEEEALQLFEKIVGEST-KASDFRPLAEEIVGKC---------GGLPVALSTVANALK 373 (724)
Q Consensus 310 ~~~------~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~-~~~~l~~~~~~I~~~c---------~GlPLai~~~~~~l~ 373 (724)
... ..-....+.+++++.++..+++...+.... ...--++..+.|++.+ +|.|..+..+.....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 110 001123699999999999999998864211 1122256788999999 788755443333221
Q ss_pred ------CC---CHHHHHHHHHHHhcCccccccCCCcccchhhHhhhhhcHHHHHHHHHhhccCC---CCCcccHHHHHHH
Q 004895 374 ------NK---SPAIWKDALNKLTSSNLREIHGMDADVYSPIKLSYDFLDDEAKSLFLLCGLHR---EGRPIHVHYLLRY 441 (724)
Q Consensus 374 ------~~---~~~~w~~~~~~l~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cf~~~s~fp---~~~~i~~~~Li~~ 441 (724)
+. +.+....+..... ...+...+..||++.+.++..++.+. .+..+....+...
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~--------------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~ 317 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL--------------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEES 317 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS--------------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh--------------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHH
Confidence 11 3333433333321 22345567889988888888777654 2214666666655
Q ss_pred HhhcccccccccccccccHHHHHHHHHHHHHHHHhhcccccCC------CCCc-------chhhHHHHHHHHHHhhh
Q 004895 442 VMGLRYDKGLGLFRNVYTLEAARNRVDALIDNLKASCLLLDGD------AEDE-------AKLHDVIHVVAASIAEE 505 (724)
Q Consensus 442 W~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~L~~~~ll~~~~------~~~~-------~~mHdlv~d~a~~~~~~ 505 (724)
+... .+..|. .. . ....+..+++.|...+++.... ..+. +..|+++..+...+..+
T Consensus 318 ~~~~--~~~~~~-~~-~----~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~ 386 (389)
T 1fnn_A 318 YKIV--CEEYGE-RP-R----VHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE 386 (389)
T ss_dssp HHHH--HHHTTC-CC-C----CHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred HHHH--HHHcCC-CC-C----CHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence 5400 001121 00 0 1234567888899999986421 1111 23567777666554433
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.33 E-value=5e-12 Score=120.89 Aligned_cols=122 Identities=18% Similarity=0.199 Sum_probs=92.8
Q ss_pred cEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc--ccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEc
Q 004895 552 KLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS--LGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSL 627 (724)
Q Consensus 552 r~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~--i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l 627 (724)
+++.+ +.+....+|...+ ..|+.|++++|.+..+|.. ++.+.+|++|+|++|.++. +..+..+++|++|++
T Consensus 11 ~~l~~--s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDC--TGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEEC--TTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEc--CCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 45555 3344455665432 3788888888888877653 7888888888888888877 357888888888888
Q ss_pred cCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 628 RGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 628 ~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
++|.++.+|.. +..+++|++|++++ +.+..+++..++.+++|++|++++|.
T Consensus 86 s~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 86 GENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CSCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 88888877654 77888888888888 46677767778888888888888864
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.32 E-value=1.6e-12 Score=122.54 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=87.5
Q ss_pred cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC-ccc-ccCCCCCcE
Q 004895 547 ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED-IAI-VGQLKKLEI 624 (724)
Q Consensus 547 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-~~~-~~~l~~L~~ 624 (724)
.+++|+.|.+. .+....++ .+....++|++|++++|.+..+ ..++.+++|++|++++|.++. ++. ++.+++|++
T Consensus 17 ~~~~L~~L~l~--~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 17 NAVRDRELDLR--GYKIPVIE-NLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp CTTSCEEEECT--TSCCCSCC-CGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CcCCceEEEee--CCCCchhH-HhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 45555555552 22222332 2223334788888888888766 567788888888888888777 333 478888888
Q ss_pred EEccCCcCcccch--hhhcCCCCCeEccCCCCCCcccChH---HhhCCCCCcEEEccCC
Q 004895 625 LSLRGAEIKQLPL--QIGQLTRLQLLDLSNCSSLVVIAPN---VISKLSRLEELYMGDS 678 (724)
Q Consensus 625 L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~~~~~---~i~~l~~L~~L~l~~~ 678 (724)
|++++|.++.+|. .+..+++|++|++++| .+...|.. .++.+++|+.|+++.|
T Consensus 93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 93 LILTNNSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EECCSCCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EECCCCcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 8888888887776 6788888888888884 45566543 4778888888887765
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.32 E-value=9.5e-12 Score=118.94 Aligned_cols=122 Identities=19% Similarity=0.307 Sum_probs=101.2
Q ss_pred cEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCc--ccccCCCCCcEEEccC
Q 004895 552 KLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDI--AIVGQLKKLEILSLRG 629 (724)
Q Consensus 552 r~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l~~ 629 (724)
+++.+ +.+....+|... .+.|+.|++++|.+..+|..+..+.+|++|+|++|.++.+ ..+..+++|++|++++
T Consensus 13 ~~l~~--~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRC--SNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEEC--TTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEc--CCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 34444 344455666543 3579999999999999999999999999999999999883 5689999999999999
Q ss_pred CcCcccch-hhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 630 AEIKQLPL-QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 630 ~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
|.++.+|+ .+..+++|++|++++ +.+..+++..+..+++|+.|++++|.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 99998865 588999999999999 56788888778899999999999874
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.32 E-value=6e-12 Score=117.56 Aligned_cols=106 Identities=25% Similarity=0.345 Sum_probs=64.4
Q ss_pred hcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC-c-ccccCCCCCcEEEccCCcCcccc--hhhhcCCCCC
Q 004895 571 FEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED-I-AIVGQLKKLEILSLRGAEIKQLP--LQIGQLTRLQ 646 (724)
Q Consensus 571 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp--~~i~~l~~L~ 646 (724)
+..+++|++|++++|.+..+ ..++.+++|++|++++|.++. + ..+..+++|++|++++|.++.+| ..+..+++|+
T Consensus 45 ~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~ 123 (168)
T 2ell_A 45 TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123 (168)
T ss_dssp CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCC
T ss_pred HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCC
Confidence 34555666666666666655 556666666666666666655 3 33444666666666666666654 4566666666
Q ss_pred eEccCCCCCCcccCh---HHhhCCCCCcEEEccCC
Q 004895 647 LLDLSNCSSLVVIAP---NVISKLSRLEELYMGDS 678 (724)
Q Consensus 647 ~L~l~~~~~l~~~~~---~~i~~l~~L~~L~l~~~ 678 (724)
+|++++| .+...++ ..+..+++|++|++.+|
T Consensus 124 ~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 124 SLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp EEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred EEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCC
Confidence 6666663 4455554 34666666666666665
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.31 E-value=2.5e-11 Score=136.78 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=19.8
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEE
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLL 556 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l 556 (724)
+.+++.|++++|.+..+|. .+++|+.|.+
T Consensus 80 l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV--LPPGLLELSI 108 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC--CCTTCCEEEE
T ss_pred CCCCCEEEcCCCcCCcCCC--CCCCCCEEEC
Confidence 4567777777777766665 5567777776
No 123
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.30 E-value=5.4e-11 Score=116.48 Aligned_cols=189 Identities=11% Similarity=0.094 Sum_probs=118.4
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhh
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDL 236 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 236 (724)
.....++||++.++.+.+++.....+.+.|+|++|+|||++|+.+++.......-...+.++.+...+...+...+....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFA 93 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHH
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHh
Confidence 34567889999999999998866655699999999999999999998864321112234444443333332222211111
Q ss_pred CCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccchh-hhh
Q 004895 237 GMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL-CID 313 (724)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-~~~ 313 (724)
.... ...+++.+||+||++... ..+.+...+.. ...++.+|+||+..... ...
T Consensus 94 ~~~~----------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~--------~~~~~~~i~~~~~~~~~~~~l 149 (226)
T 2chg_A 94 RTAP----------------IGGAPFKIIFLDEADALTADAQAALRRTMEM--------YSKSCRFILSCNYVSRIIEPI 149 (226)
T ss_dssp TSCC----------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCGGGSCHHH
T ss_pred cccC----------------CCccCceEEEEeChhhcCHHHHHHHHHHHHh--------cCCCCeEEEEeCChhhcCHHH
Confidence 1000 012467999999997653 22333222222 34567888888765421 111
Q ss_pred cCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHH
Q 004895 314 MNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVAN 370 (724)
Q Consensus 314 ~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~ 370 (724)
......+.+.+++.++..+++.+.+...... --++..+.|++.++|.|..+..+..
T Consensus 150 ~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhCceeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2234489999999999999999887422211 1146778899999999986554433
No 124
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.30 E-value=5.5e-11 Score=118.17 Aligned_cols=200 Identities=13% Similarity=0.165 Sum_probs=118.8
Q ss_pred CcccccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDK-LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
+.....++||+.+++.+..++..+. .+.+.|+|++|+||||+|+.+++.......+... ....... ...+..
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~------~~~~~~~-~~~~~~ 91 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT------PCGVCDN-CREIEQ 91 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS------CCSCSHH-HHHHHT
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC------CCcccHH-HHHHhc
Confidence 3345678999999999999887543 4588999999999999999999887542211000 0000000 011110
Q ss_pred hhCCC-----CCCCchhHHHHHHHHHHHh----cCCcEEEEEcccccc--ccccccccccCCCCcCCCCCCCCCcEEEEE
Q 004895 235 DLGMN-----FDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTK--LELDKIGIPYGDVDEKDKNDDPRRCTIILT 303 (724)
Q Consensus 235 ~l~~~-----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 303 (724)
..... ..... .......+.+.+. .+++.+||+||++.. ..++.+...+.. ...+..+|+|
T Consensus 92 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~--------~~~~~~~i~~ 162 (250)
T 1njg_A 92 GRFVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--------PPEHVKFLLA 162 (250)
T ss_dssp TCCSSEEEEETTCGG-GHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS--------CCTTEEEEEE
T ss_pred cCCcceEEecCcccc-cHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc--------CCCceEEEEE
Confidence 00000 00000 1111222222221 246799999999764 234444333322 3456788888
Q ss_pred ecccchh-hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHh
Q 004895 304 SRSRDLL-CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANAL 372 (724)
Q Consensus 304 tR~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 372 (724)
|+..... .........+++++++.++..+++.+.+...... --++..+.|++.|+|.|..+..+...+
T Consensus 163 t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 163 TTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8765422 1112334689999999999999999887532211 124678899999999999987766544
No 125
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.30 E-value=1e-11 Score=118.75 Aligned_cols=121 Identities=23% Similarity=0.339 Sum_probs=100.4
Q ss_pred eEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcEEEcCCc
Q 004895 530 IAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQTLCLDGW 608 (724)
Q Consensus 530 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~ 608 (724)
+.+.++++.+..+|... .++|+.|.+ +.+....++ ..|.++++|+.|++++|.+..+| ..+..+.+|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L--~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYL--DGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEEC--CSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEEC--CCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46788888888888654 468999998 344455666 46889999999999999999775 46899999999999999
Q ss_pred ccCCc--ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCC
Q 004895 609 RLEDI--AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCS 654 (724)
Q Consensus 609 ~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 654 (724)
.++.+ ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 98883 4689999999999999999988875 7889999999999853
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.29 E-value=3.2e-11 Score=131.53 Aligned_cols=138 Identities=16% Similarity=0.233 Sum_probs=79.1
Q ss_pred cCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcC
Q 004895 527 KGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLD 606 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 606 (724)
.+++++++++|.+..++.. .++|++|.+. .+....+| .|.++++|++|++++|.+..+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~--~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVS--NNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC--CTTCCEEECC--SSCCSSCC--CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECC
T ss_pred CCCcEEECCCCccCcccCC--CCCCCEEECc--CCCCCCCc--ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECc
Confidence 4555555555555544432 1456666662 22333344 2566666666666666666665433 366666666
Q ss_pred CcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 607 GWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 607 ~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
+|.++.++.++.+++|++|++++|.++.+|... .+|++|++++| .+..+|. ++.+++|++|++++|.
T Consensus 182 ~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 182 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNL 248 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSC
T ss_pred CCcCCcCccccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCc
Confidence 666666545666666666666666666555432 35666666663 3445542 5666666666666653
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=9.4e-12 Score=139.17 Aligned_cols=99 Identities=25% Similarity=0.295 Sum_probs=65.5
Q ss_pred ceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC-cccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCC
Q 004895 577 LKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED-IAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSS 655 (724)
Q Consensus 577 L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~ 655 (724)
|++|++++|.++.+|. ++.+.+|++|+|++|.++. |..++.+++|++|+|++|.++.+| .++.+++|++|++++ +.
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NR 519 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-CC
Confidence 6666666666666665 6666677777777766666 456666777777777777666666 666677777777766 34
Q ss_pred CcccC-hHHhhCCCCCcEEEccCC
Q 004895 656 LVVIA-PNVISKLSRLEELYMGDS 678 (724)
Q Consensus 656 l~~~~-~~~i~~l~~L~~L~l~~~ 678 (724)
+..++ |..++.|++|+.|++++|
T Consensus 520 l~~~~~p~~l~~l~~L~~L~L~~N 543 (567)
T 1dce_A 520 LQQSAAIQPLVSCPRLVLLNLQGN 543 (567)
T ss_dssp CCSSSTTGGGGGCTTCCEEECTTS
T ss_pred CCCCCCcHHHhcCCCCCEEEecCC
Confidence 55553 444666777777777665
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.29 E-value=2.7e-11 Score=132.19 Aligned_cols=165 Identities=22% Similarity=0.242 Sum_probs=125.2
Q ss_pred ccCceEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEc
Q 004895 526 QKGPIAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCL 605 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L 605 (724)
+.+++++++++|.+..+|.. .++|+.|.+. .+....++. ..++|++|++++|.+..+| .++++.+|++|++
T Consensus 90 ~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~--~n~l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 90 PPHLESLVASCNSLTELPEL--PQSLKSLLVD--NNNLKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDV 160 (454)
T ss_dssp CTTCSEEECCSSCCSSCCCC--CTTCCEEECC--SSCCSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEEC
T ss_pred cCCCCEEEccCCcCCccccc--cCCCcEEECC--CCccCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEEC
Confidence 46889999999998888753 4789999983 333333332 1268999999999999998 5999999999999
Q ss_pred CCcccCCcccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccc
Q 004895 606 DGWRLEDIAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKV 685 (724)
Q Consensus 606 ~~~~l~~~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~ 685 (724)
++|.++.++.. +.+|++|++++|.++.+| .++.+++|++|++++| .+..+|. ..++|++|++++|....
T Consensus 161 ~~N~l~~lp~~--~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~~----~~~~L~~L~l~~n~l~~--- 229 (454)
T 1jl5_A 161 DNNSLKKLPDL--PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNN-SLKKLPD----LPLSLESIVAGNNILEE--- 229 (454)
T ss_dssp CSSCCSCCCCC--CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS-CCSSCCC----CCTTCCEEECCSSCCSS---
T ss_pred CCCcCcccCCC--cccccEEECcCCcCCcCc-cccCCCCCCEEECCCC-cCCcCCC----CcCcccEEECcCCcCCc---
Confidence 99998874322 358999999999999988 6999999999999995 5666653 23689999999874321
Q ss_pred cCCccchHHhhcCCCCCcEEEeeccccccccc
Q 004895 686 EGGSNASLAELKGLSKLTTLEIDVRDAEMLRR 717 (724)
Q Consensus 686 ~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~ 717 (724)
.+ .+.++++|+.|+++.|.++.+|.
T Consensus 230 ---lp----~~~~l~~L~~L~l~~N~l~~l~~ 254 (454)
T 1jl5_A 230 ---LP----ELQNLPFLTTIYADNNLLKTLPD 254 (454)
T ss_dssp ---CC----CCTTCTTCCEEECCSSCCSSCCS
T ss_pred ---cc----ccCCCCCCCEEECCCCcCCcccc
Confidence 11 25567777777777777766654
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.27 E-value=1.1e-11 Score=118.51 Aligned_cols=122 Identities=20% Similarity=0.322 Sum_probs=102.9
Q ss_pred eEEeccCCCcccCCCcccCCCccEEEEecccccccccch-hhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcEEEcCC
Q 004895 530 IAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISD-HFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQTLCLDG 607 (724)
Q Consensus 530 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~ 607 (724)
+.+.++++.+..+|.... ++++.|.+ +.+....++. ..|..+++|++|++++|.+..+ |..+..+.+|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l--~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP-LHTTELLL--NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEEC--CSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC-CCCCEEEC--CCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 678899999988887543 48999999 3444555554 3588999999999999999966 77899999999999999
Q ss_pred cccCCc--ccccCCCCCcEEEccCCcCccc-chhhhcCCCCCeEccCCCC
Q 004895 608 WRLEDI--AIVGQLKKLEILSLRGAEIKQL-PLQIGQLTRLQLLDLSNCS 654 (724)
Q Consensus 608 ~~l~~~--~~~~~l~~L~~L~l~~~~i~~l-p~~i~~l~~L~~L~l~~~~ 654 (724)
|.++.+ ..+..+++|++|++++|.++.+ |..+..+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 999883 4589999999999999999966 6679999999999999954
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.26 E-value=5.9e-12 Score=132.74 Aligned_cols=154 Identities=17% Similarity=0.139 Sum_probs=105.4
Q ss_pred ccCceEEeccCCCcccCCCc--ccCCCccEEEEecccccccccchhhhcCCCCce-EEEcCCCcCCCC-CccccCCCCCc
Q 004895 526 QKGPIAISLPYRDIQELPER--LECPQLKLFLLFAKYDSTLQISDHFFEGTEELK-VLDFTGIRFSPL-PSSLGRLINLQ 601 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~l-p~~i~~l~~L~ 601 (724)
+.++++|.+++|.++.+|.. ..+++|+.|.+. .+.....++...|.+++.|. .+.+++|++..+ |..+..+++|+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEIS-QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEE-CCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECc-CCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccc
Confidence 46788888888888888753 368888888883 22222345555666666654 355556666655 44566777777
Q ss_pred EEEcCCcccCCc---------------------------ccccCC-CCCcEEEccCCcCcccchhhhcCCCCCeEccCCC
Q 004895 602 TLCLDGWRLEDI---------------------------AIVGQL-KKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNC 653 (724)
Q Consensus 602 ~L~L~~~~l~~~---------------------------~~~~~l-~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~ 653 (724)
+|++++|.++.+ ..+..+ ..|++|++++|.++.+|..+....+|+.|++.++
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccC
Confidence 777776665431 122333 3577788888888888877777778888888777
Q ss_pred CCCcccChHHhhCCCCCcEEEccCCCC
Q 004895 654 SSLVVIAPNVISKLSRLEELYMGDSFS 680 (724)
Q Consensus 654 ~~l~~~~~~~i~~l~~L~~L~l~~~~~ 680 (724)
+.++.+|+..+..+++|++|++++|.+
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRI 214 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCc
Confidence 778888877778888888888887643
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.26 E-value=6.2e-12 Score=145.17 Aligned_cols=114 Identities=24% Similarity=0.295 Sum_probs=78.1
Q ss_pred cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC-cccccCCCCCcEE
Q 004895 547 ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED-IAIVGQLKKLEIL 625 (724)
Q Consensus 547 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L 625 (724)
.+++|+.|.+ +.+....++...+ ++++|+.|+|++|.+..+|..|++|.+|++|+|++|.++. |..++.|.+|++|
T Consensus 222 ~l~~L~~L~L--s~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDL--SNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEEC--TTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEEC--CCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 4566777776 3333445555544 6777777777777777777777777777777777777766 5667777777777
Q ss_pred EccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHh
Q 004895 626 SLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVI 664 (724)
Q Consensus 626 ~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i 664 (724)
+|++|.++.+|..|++|++|++|+|++| .+...+|..+
T Consensus 299 ~L~~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~p~~~ 336 (727)
T 4b8c_D 299 YFFDNMVTTLPWEFGNLCNLQFLGVEGN-PLEKQFLKIL 336 (727)
T ss_dssp ECCSSCCCCCCSSTTSCTTCCCEECTTS-CCCSHHHHHH
T ss_pred ECCCCCCCccChhhhcCCCccEEeCCCC-ccCCCChHHH
Confidence 7777777777777777777777777773 4554444444
No 132
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.25 E-value=5.2e-12 Score=135.15 Aligned_cols=184 Identities=13% Similarity=0.112 Sum_probs=120.7
Q ss_pred ccCceEEeccCCCccc-----CCCc-ccCCCccEEEEecccccccccc----hhhhcCC---------CCceEEEcCCCc
Q 004895 526 QKGPIAISLPYRDIQE-----LPER-LECPQLKLFLLFAKYDSTLQIS----DHFFEGT---------EELKVLDFTGIR 586 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~-----~~~~-~~~~~Lr~L~l~~~~~~~~~~~----~~~~~~l---------~~L~~L~l~~~~ 586 (724)
..++++|++++|.+.. ++.. ..+++|+.|.+..+ ...... ...+..+ ++|+.|++++|.
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n--~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN--GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS--CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC--CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 4678888888887754 3322 25788888888322 222111 1123333 788888888888
Q ss_pred CC--CCC---ccccCCCCCcEEEcCCcccCC------cc-cccCCCCCcEEEccCCcC-----cccchhhhcCCCCCeEc
Q 004895 587 FS--PLP---SSLGRLINLQTLCLDGWRLED------IA-IVGQLKKLEILSLRGAEI-----KQLPLQIGQLTRLQLLD 649 (724)
Q Consensus 587 ~~--~lp---~~i~~l~~L~~L~L~~~~l~~------~~-~~~~l~~L~~L~l~~~~i-----~~lp~~i~~l~~L~~L~ 649 (724)
+. .+| ..+..+++|++|++++|.++. .+ .+..+++|++|++++|.+ ..+|..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 86 344 466778888888888888772 23 777888888888888887 46778888888888888
Q ss_pred cCCCCCCccc----ChHHh--hCCCCCcEEEccCCCCccccccCCccchHHhh-cCCCCCcEEEeecccccccc
Q 004895 650 LSNCSSLVVI----APNVI--SKLSRLEELYMGDSFSQWDKVEGGSNASLAEL-KGLSKLTTLEIDVRDAEMLR 716 (724)
Q Consensus 650 l~~~~~l~~~----~~~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L-~~L~~L~~L~l~~n~~~~lp 716 (724)
+++|. +... .+..+ +.+++|++|++++|.+... ........+ .++++|+.|++++|.++...
T Consensus 251 L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~----g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD----AVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH----HHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHH----HHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 88854 4433 12334 3488888888888643211 000122333 45788888998888876544
No 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.25 E-value=4e-12 Score=136.04 Aligned_cols=180 Identities=19% Similarity=0.247 Sum_probs=106.1
Q ss_pred ccCceEEeccCCCcccC----CCc--------ccCCCccEEEEecccccccc----cchhhhcCCCCceEEEcCCCcCCC
Q 004895 526 QKGPIAISLPYRDIQEL----PER--------LECPQLKLFLLFAKYDSTLQ----ISDHFFEGTEELKVLDFTGIRFSP 589 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~----~~~--------~~~~~Lr~L~l~~~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~ 589 (724)
..++++|++++|.+..+ |.. ..+++|+.|.+..+ .... .....+..+++|+.|++++|.+..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n--~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~ 136 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN--AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP 136 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC--CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC--cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence 35677777776654433 211 25677777777322 2222 122345667777777777777752
Q ss_pred -----CCccccCC---------CCCcEEEcCCcccCC--c----ccccCCCCCcEEEccCCcCc------ccchhhhcCC
Q 004895 590 -----LPSSLGRL---------INLQTLCLDGWRLED--I----AIVGQLKKLEILSLRGAEIK------QLPLQIGQLT 643 (724)
Q Consensus 590 -----lp~~i~~l---------~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~i~------~lp~~i~~l~ 643 (724)
++..+..+ ++|++|++++|.++. . ..+..+++|++|++++|.++ -+|..+.+++
T Consensus 137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~ 216 (386)
T 2ca6_A 137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC
Confidence 23333344 677777777777763 2 35566777777777777776 2233667777
Q ss_pred CCCeEccCCCCCC-----cccChHHhhCCCCCcEEEccCCCCccccccCCccc-hHHhhc--CCCCCcEEEeecccccc
Q 004895 644 RLQLLDLSNCSSL-----VVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNA-SLAELK--GLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 644 ~L~~L~l~~~~~l-----~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~-~l~~L~--~L~~L~~L~l~~n~~~~ 714 (724)
+|++|++++|. + ..+ +..+..+++|++|++++|.+ .+.... ....+. ++++|+.|++++|.++.
T Consensus 217 ~L~~L~Ls~n~-l~~~g~~~l-~~~l~~~~~L~~L~L~~n~i-----~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 217 ELKVLDLQDNT-FTHLGSSAL-AIALKSWPNLRELGLNDCLL-----SARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TCCEEECCSSC-CHHHHHHHH-HHHGGGCTTCCEEECTTCCC-----CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CccEEECcCCC-CCcHHHHHH-HHHHccCCCcCEEECCCCCC-----chhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 77777777743 4 223 33467777777777777632 111111 122342 36777777777777765
No 134
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.23 E-value=2.5e-11 Score=127.89 Aligned_cols=187 Identities=18% Similarity=0.135 Sum_probs=136.6
Q ss_pred EEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCC-CCCc-cccCCCCCcE-EEcCC
Q 004895 531 AISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFS-PLPS-SLGRLINLQT-LCLDG 607 (724)
Q Consensus 531 ~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~lp~-~i~~l~~L~~-L~L~~ 607 (724)
.+.-++++++++|..+ .++++.|.+ ..+....++...|.++++|++|+|++|.+. .+|. .+.++.+|.. +.+++
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~L--s~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRF--VLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEE--ESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEc--cCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4556677888888655 468999999 445677888888999999999999999986 4554 5788888775 56677
Q ss_pred cccCC--cccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCC-CCcEEEccCCCCccc
Q 004895 608 WRLED--IAIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLS-RLEELYMGDSFSQWD 683 (724)
Q Consensus 608 ~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~-~L~~L~l~~~~~~~~ 683 (724)
|.++. +..+..+++|++|++++|.++.+|.. +....++..|++.+++.+..+++..+..+. .|+.|++++|.+...
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 88887 36789999999999999999987653 455667778888776777777766556654 577888877653211
Q ss_pred c---ccC-----------CccchH--HhhcCCCCCcEEEeecccccccccccc
Q 004895 684 K---VEG-----------GSNASL--AELKGLSKLTTLEIDVRDAEMLRRIWS 720 (724)
Q Consensus 684 ~---~~~-----------~~~~~l--~~L~~L~~L~~L~l~~n~~~~lp~~~~ 720 (724)
. +.+ ..-..+ ..+.++++|+.|+++.|.++.+|...+
T Consensus 170 ~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 0 000 000011 235678899999999999999987654
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.22 E-value=3.4e-11 Score=134.69 Aligned_cols=104 Identities=25% Similarity=0.275 Sum_probs=90.6
Q ss_pred hcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCcccccCCCCCcEEEccCCcCccc--chhhhcCCCCCeE
Q 004895 571 FEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSLRGAEIKQL--PLQIGQLTRLQLL 648 (724)
Q Consensus 571 ~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l~~~~i~~l--p~~i~~l~~L~~L 648 (724)
|.++++|+.|++++|.+..+|..++.+++|++|+|++|.++.++.++.+++|++|++++|.++.+ |..++.+++|++|
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L 538 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538 (567)
T ss_dssp GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEE
T ss_pred ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEE
Confidence 67788999999999999999999999999999999999999977999999999999999999988 8899999999999
Q ss_pred ccCCCCCCcccChH---HhhCCCCCcEEEc
Q 004895 649 DLSNCSSLVVIAPN---VISKLSRLEELYM 675 (724)
Q Consensus 649 ~l~~~~~l~~~~~~---~i~~l~~L~~L~l 675 (724)
++++ +.+...|+. .+..+++|+.|++
T Consensus 539 ~L~~-N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 539 NLQG-NSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECTT-SGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred EecC-CcCCCCccHHHHHHHHCcccCccCC
Confidence 9999 456666542 2345778887753
No 136
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.22 E-value=2e-11 Score=104.64 Aligned_cols=75 Identities=13% Similarity=0.211 Sum_probs=61.0
Q ss_pred hhHhHhhHhhhhcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHHHHHHhh
Q 004895 15 EGTKTLSEPIIGRMSYVLKCQSYIDGLKERVEELGQRRKRVKILVDQATEQG-YEIFADVTEWLGKVEQFTQGYAKHIIN 93 (724)
Q Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~i~~~l~~a~~~~-~~~~~~v~~Wl~~l~~~~~~~~ed~ld 93 (724)
.+.+++.+.+.+++. .+.++++++++|+++|..|+++|.+|++++ ...++.++.|+++||+++|| +||++|
T Consensus 5 ~ll~KL~~ll~~E~~-------l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD-~ED~iD 76 (115)
T 3qfl_A 5 NLIPKLGELLTEEFK-------LHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYV-IEDVVD 76 (115)
T ss_dssp SHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHH-HHHHHH
Confidence 344444445555444 378999999999999999999999999874 23589999999999999999 999999
Q ss_pred hhcc
Q 004895 94 DEDE 97 (724)
Q Consensus 94 ~~~~ 97 (724)
++..
T Consensus 77 ~f~~ 80 (115)
T 3qfl_A 77 KFLV 80 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8753
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.22 E-value=7.3e-13 Score=127.51 Aligned_cols=137 Identities=21% Similarity=0.237 Sum_probs=97.3
Q ss_pred hhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC-cccccCCCCCcEEEccCCcCcccchhhhcCCCCCeE
Q 004895 570 FFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED-IAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLL 648 (724)
Q Consensus 570 ~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L 648 (724)
.+..+++|++|++++|.+..+| .++.+.+|++|++++|.++. |..++.+++|++|++++|.++.+| .+..+++|++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL 120 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence 5677888888888888888887 78888888888888888877 455666788888888888888877 58888888888
Q ss_pred ccCCCCCCcccCh-HHhhCCCCCcEEEccCCCCccccccCC---ccchHHhhcCCCCCcEEEeecccc
Q 004895 649 DLSNCSSLVVIAP-NVISKLSRLEELYMGDSFSQWDKVEGG---SNASLAELKGLSKLTTLEIDVRDA 712 (724)
Q Consensus 649 ~l~~~~~l~~~~~-~~i~~l~~L~~L~l~~~~~~~~~~~~~---~~~~l~~L~~L~~L~~L~l~~n~~ 712 (724)
++++| .+..+++ ..+..+++|++|++++|..... .... .......+..+++|+.|+ ++.+
T Consensus 121 ~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYND-YKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp EESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHH-HHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred ECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccc-cccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 88884 5565543 4578888888888887632110 0000 001112356777888876 4444
No 138
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.21 E-value=2.7e-11 Score=128.36 Aligned_cols=132 Identities=23% Similarity=0.257 Sum_probs=63.5
Q ss_pred CCceEEEcCCCcCCCCCc-c----ccC-CCCCcEEEcCCcccCC------cccccCCC-CCcEEEccCCcCcccc-h---
Q 004895 575 EELKVLDFTGIRFSPLPS-S----LGR-LINLQTLCLDGWRLED------IAIVGQLK-KLEILSLRGAEIKQLP-L--- 637 (724)
Q Consensus 575 ~~L~~L~l~~~~~~~lp~-~----i~~-l~~L~~L~L~~~~l~~------~~~~~~l~-~L~~L~l~~~~i~~lp-~--- 637 (724)
++|+.|++++|.+...+. . +.. ..+|++|+|++|.++. +..+..++ +|++|++++|.++..+ .
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 188 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELA 188 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHH
Confidence 556666666666553322 2 222 2356666666665553 12233343 5666666666555332 2
Q ss_pred -hhhcC-CCCCeEccCCCCCCcc-----cChHHhhC-CCCCcEEEccCCCCccccccCCccchH-HhhcCCCCCcEEEee
Q 004895 638 -QIGQL-TRLQLLDLSNCSSLVV-----IAPNVISK-LSRLEELYMGDSFSQWDKVEGGSNASL-AELKGLSKLTTLEID 708 (724)
Q Consensus 638 -~i~~l-~~L~~L~l~~~~~l~~-----~~~~~i~~-l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~L~~L~~L~~L~l~ 708 (724)
.+..+ ++|++|++++| .+.. ++. .+.. .++|++|++++|.. .+.....+ ..+..+++|+.|+++
T Consensus 189 ~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l-----~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 189 KFLASIPASVTSLDLSAN-LLGLKSYAELAY-IFSSIPNHVVSLNLCLNCL-----HGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp HHHHTSCTTCCEEECTTS-CGGGSCHHHHHH-HHHHSCTTCCEEECCSSCC-----CCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred HHHHhCCCCCCEEECCCC-CCChhHHHHHHH-HHhcCCCCceEEECcCCCC-----CcHHHHHHHHHHhcCCCccEEEec
Confidence 22333 36666666663 3333 221 2333 34666666666432 21112222 223556667777777
Q ss_pred ccccc
Q 004895 709 VRDAE 713 (724)
Q Consensus 709 ~n~~~ 713 (724)
+|.+.
T Consensus 262 ~n~l~ 266 (362)
T 3goz_A 262 YDIVK 266 (362)
T ss_dssp HHHHT
T ss_pred cCCcc
Confidence 77633
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=1e-10 Score=110.08 Aligned_cols=122 Identities=19% Similarity=0.363 Sum_probs=92.3
Q ss_pred cEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCc-cccCCCCCcEEEcCCcccCCc--ccccCCCCCcEEEcc
Q 004895 552 KLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPS-SLGRLINLQTLCLDGWRLEDI--AIVGQLKKLEILSLR 628 (724)
Q Consensus 552 r~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~-~i~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l~ 628 (724)
+.+.+ ..+....+|... .+.|+.|++++|.+..+|. .++.+.+|++|++++|.++.+ ..++.+++|++|+++
T Consensus 10 ~~l~~--~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRC--NSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEEC--CSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEEe--cCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 44555 333344555432 3678889999988887765 457888899999999888873 346888899999999
Q ss_pred CCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCC
Q 004895 629 GAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 629 ~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
+|.++.+|.. +..+++|++|++++ +.+..+|+..+..+++|++|++++|.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCC
Confidence 9988888765 57888999999988 46777877767888889999888864
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.16 E-value=2.1e-10 Score=107.97 Aligned_cols=122 Identities=20% Similarity=0.315 Sum_probs=103.2
Q ss_pred eEEeccCCCcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc-ccCCCCCcEEEcCCc
Q 004895 530 IAISLPYRDIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS-LGRLINLQTLCLDGW 608 (724)
Q Consensus 530 ~~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L~L~~~ 608 (724)
+.+.+.++.+..+|... .++|+.|.+ +.+....++...|.++++|++|++++|.+..+|.. +..+.+|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEe--CCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 46778888888887543 478999999 34445677777889999999999999999988764 689999999999999
Q ss_pred ccCC-c-ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCC
Q 004895 609 RLED-I-AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCS 654 (724)
Q Consensus 609 ~l~~-~-~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 654 (724)
.++. + ..+..+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCC
Confidence 9988 3 3478999999999999999999887 4789999999999954
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=1.7e-10 Score=108.19 Aligned_cols=99 Identities=21% Similarity=0.413 Sum_probs=67.7
Q ss_pred eEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCC
Q 004895 578 KVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCS 654 (724)
Q Consensus 578 ~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~ 654 (724)
+.++++++.+..+|..+. .+|++|+|++|.++. +..++.+++|++|+|++|.++.+|.. +..+++|++|++++ +
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-N 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-S
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-C
Confidence 566777777777776554 667777777777666 24567777777777777777777665 46677777777776 4
Q ss_pred CCcccChHHhhCCCCCcEEEccCCC
Q 004895 655 SLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 655 ~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
.+..+|+..++.+++|++|++++|.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred ccceeCHHHhccccCCCEEEeCCCC
Confidence 5666666556777777777777653
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.13 E-value=1.5e-10 Score=108.02 Aligned_cols=100 Identities=21% Similarity=0.358 Sum_probs=78.5
Q ss_pred ceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCC
Q 004895 577 LKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNC 653 (724)
Q Consensus 577 L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~ 653 (724)
.+.++++++.+..+|..+. .+|++|+|++|.++. +..+..+++|++|++++|.++.+|.. +..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~- 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND- 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-
Confidence 4678888888888887664 778888888888877 35578888888888888888888766 47888888888888
Q ss_pred CCCcccChHHhhCCCCCcEEEccCCC
Q 004895 654 SSLVVIAPNVISKLSRLEELYMGDSF 679 (724)
Q Consensus 654 ~~l~~~~~~~i~~l~~L~~L~l~~~~ 679 (724)
+.+..+++..++.+++|++|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 56777777767888888888888864
No 143
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.11 E-value=5.3e-10 Score=116.27 Aligned_cols=192 Identities=14% Similarity=0.135 Sum_probs=118.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
|.....++||+..++.+..++..+..+.+.|+|++|+||||+|+.+++..........+++++.+...+...+ +++++.
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~ 95 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-RNQIKH 95 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH-HTHHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH-HHHHHH
Confidence 4445678999999999999988766656999999999999999999998643211112444544433332222 222221
Q ss_pred hCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccchh-hh
Q 004895 236 LGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL-CI 312 (724)
Q Consensus 236 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-~~ 312 (724)
+..... .+..+++.++|+||++... .++.+...+.. ...++.+|+||+...-. ..
T Consensus 96 ~~~~~~--------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~--------~~~~~~~il~~~~~~~l~~~ 153 (323)
T 1sxj_B 96 FAQKKL--------------HLPPGKHKIVILDEADSMTAGAQQALRRTMEL--------YSNSTRFAFACNQSNKIIEP 153 (323)
T ss_dssp HHHBCC--------------CCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH--------TTTTEEEEEEESCGGGSCHH
T ss_pred HHhccc--------------cCCCCCceEEEEECcccCCHHHHHHHHHHHhc--------cCCCceEEEEeCChhhchhH
Confidence 110000 0002458999999997642 23333222222 33567788888664321 11
Q ss_pred hcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhH-HHHHHHH
Q 004895 313 DMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVA-LSTVANA 371 (724)
Q Consensus 313 ~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa-i~~~~~~ 371 (724)
.......+.+.+++.++..+++...+...... --++....|++.|+|.|.. +..+...
T Consensus 154 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 154 LQSQCAILRYSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhceEEeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12334589999999999999999876422111 1146778999999999954 4444433
No 144
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.11 E-value=3.1e-11 Score=127.83 Aligned_cols=180 Identities=15% Similarity=0.172 Sum_probs=129.8
Q ss_pred cCceEEeccCCCcccCCCc------ccC-CCccEEEEecccccccccchhh----hcC-CCCceEEEcCCCcCC-----C
Q 004895 527 KGPIAISLPYRDIQELPER------LEC-PQLKLFLLFAKYDSTLQISDHF----FEG-TEELKVLDFTGIRFS-----P 589 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~~~~------~~~-~~Lr~L~l~~~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~-----~ 589 (724)
.++++|++++|.+...... ..+ ++|+.|.+. .+.....+... +.. .+.|+.|++++|.+. .
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls--~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG--WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC--SSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECc--CCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 6899999999988655422 133 799999993 33344444333 344 369999999999988 3
Q ss_pred CCccccCCC-CCcEEEcCCcccCC--cc----cccCC-CCCcEEEccCCcCcc-----cchhhhcC-CCCCeEccCCCCC
Q 004895 590 LPSSLGRLI-NLQTLCLDGWRLED--IA----IVGQL-KKLEILSLRGAEIKQ-----LPLQIGQL-TRLQLLDLSNCSS 655 (724)
Q Consensus 590 lp~~i~~l~-~L~~L~L~~~~l~~--~~----~~~~l-~~L~~L~l~~~~i~~-----lp~~i~~l-~~L~~L~l~~~~~ 655 (724)
++..+..+. +|++|+|++|.++. +. .+..+ ++|++|++++|.++. +|..+..+ ++|++|++++| .
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~ 236 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-C 236 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-C
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-C
Confidence 455556666 99999999999876 22 34555 599999999999887 77777774 59999999995 5
Q ss_pred CcccCh----HHhhCCCCCcEEEccCCCCccccccCCccc----hHHhhcCCCCCcEEEeecccccc
Q 004895 656 LVVIAP----NVISKLSRLEELYMGDSFSQWDKVEGGSNA----SLAELKGLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 656 l~~~~~----~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~----~l~~L~~L~~L~~L~l~~n~~~~ 714 (724)
+...++ ..+..+++|++|++++|. +...... ....+.++++|+.|++++|.+..
T Consensus 237 l~~~~~~~l~~~~~~l~~L~~L~L~~n~-----l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 237 LHGPSLENLKLLKDSLKHLQTVYLDYDI-----VKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp CCCCCHHHHHHTTTTTTTCSEEEEEHHH-----HTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCcHHHHHHHHHHhcCCCccEEEeccCC-----ccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 666554 234678999999999863 1111122 22356678899999999998754
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.10 E-value=3.2e-12 Score=122.94 Aligned_cols=132 Identities=18% Similarity=0.214 Sum_probs=108.0
Q ss_pred CcccCCCc-ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCcccc
Q 004895 538 DIQELPER-LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIV 616 (724)
Q Consensus 538 ~~~~~~~~-~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~~~~ 616 (724)
.++.+|.. ..+++|+.|.+. .+....++ .+.++++|+.|++++|.+..+|..+..+++|++|++++|.++.++.+
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls--~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~ 111 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALS--TNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGI 111 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECS--EEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHH
T ss_pred cHhhhhHHHhcCCCCCEEECC--CCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCcc
Confidence 33444432 368899999993 33444565 57889999999999999999999888899999999999999997789
Q ss_pred cCCCCCcEEEccCCcCcccch--hhhcCCCCCeEccCCCCCCcccCh----------HHhhCCCCCcEEE
Q 004895 617 GQLKKLEILSLRGAEIKQLPL--QIGQLTRLQLLDLSNCSSLVVIAP----------NVISKLSRLEELY 674 (724)
Q Consensus 617 ~~l~~L~~L~l~~~~i~~lp~--~i~~l~~L~~L~l~~~~~l~~~~~----------~~i~~l~~L~~L~ 674 (724)
+.+++|++|++++|.++.+|. .+..+++|++|++++| .+...+| ..+..+++|+.|+
T Consensus 112 ~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 999999999999999998865 7899999999999995 4433322 2478999999997
No 146
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.04 E-value=9.6e-11 Score=128.44 Aligned_cols=180 Identities=16% Similarity=0.125 Sum_probs=90.8
Q ss_pred cCceEEeccCCCcccC-C-Ccc-cCC----CccEEEEeccccccc----ccchhhhcCCCCceEEEcCCCcCCC-CCccc
Q 004895 527 KGPIAISLPYRDIQEL-P-ERL-ECP----QLKLFLLFAKYDSTL----QISDHFFEGTEELKVLDFTGIRFSP-LPSSL 594 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~-~-~~~-~~~----~Lr~L~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~-lp~~i 594 (724)
.++++|++++|.+... + ... .++ +|++|.+..+ ... ......+..+++|+.|++++|.+.. .+..+
T Consensus 56 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n--~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 133 (461)
T 1z7x_W 56 PALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC--CLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL 133 (461)
T ss_dssp TTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS--CCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred CCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC--CCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHH
Confidence 4566666666655321 0 000 122 4666666222 111 1223345566666666666666542 12222
Q ss_pred c-----CCCCCcEEEcCCcccCC------cccccCCCCCcEEEccCCcCccc-chhhh-----cCCCCCeEccCCCCCCc
Q 004895 595 G-----RLINLQTLCLDGWRLED------IAIVGQLKKLEILSLRGAEIKQL-PLQIG-----QLTRLQLLDLSNCSSLV 657 (724)
Q Consensus 595 ~-----~l~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~l~~~~i~~l-p~~i~-----~l~~L~~L~l~~~~~l~ 657 (724)
. ...+|++|++++|.++. +..+..+++|++|++++|.++.. +..+. .+++|++|++++| .+.
T Consensus 134 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~ 212 (461)
T 1z7x_W 134 CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVT 212 (461)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCB
T ss_pred HHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCc
Confidence 1 23456666666666554 23445566677777776665532 22222 2456777777664 333
Q ss_pred cc----ChHHhhCCCCCcEEEccCCCCccccccCCccchH-Hh-hcCCCCCcEEEeecccccc
Q 004895 658 VI----APNVISKLSRLEELYMGDSFSQWDKVEGGSNASL-AE-LKGLSKLTTLEIDVRDAEM 714 (724)
Q Consensus 658 ~~----~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~-L~~L~~L~~L~l~~n~~~~ 714 (724)
.. .+..+..+++|++|++++|..... ....+ .. ...+++|+.|+++.|.++.
T Consensus 213 ~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~-----~~~~l~~~~~~~~~~L~~L~L~~n~l~~ 270 (461)
T 1z7x_W 213 SDNCRDLCGIVASKASLRELALGSNKLGDV-----GMAELCPGLLHPSSRLRTLWIWECGITA 270 (461)
T ss_dssp TTHHHHHHHHHHHCTTCCEEECCSSBCHHH-----HHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred HHHHHHHHHHHHhCCCccEEeccCCcCChH-----HHHHHHHHHhcCCCCceEEECcCCCCCH
Confidence 32 133456677777777776532111 00011 11 1246788888888887765
No 147
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.03 E-value=1.1e-10 Score=128.03 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=70.2
Q ss_pred hcCCCCceEEEcCCCcCCCC------CccccCCCCCcEEEcCCcccCC------cccccCCCCCcEEEccCCcCccc-ch
Q 004895 571 FEGTEELKVLDFTGIRFSPL------PSSLGRLINLQTLCLDGWRLED------IAIVGQLKKLEILSLRGAEIKQL-PL 637 (724)
Q Consensus 571 ~~~l~~L~~L~l~~~~~~~l------p~~i~~l~~L~~L~L~~~~l~~------~~~~~~l~~L~~L~l~~~~i~~l-p~ 637 (724)
+..+++|+.|++++|.+... +.....+.+|++|++++|.++. +..+..+++|++|++++|.++.. +.
T Consensus 223 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 302 (461)
T 1z7x_W 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHH
T ss_pred HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHH
Confidence 44556666666666655421 1112245566666666666554 23344566666666666655422 11
Q ss_pred hhhc-----CCCCCeEccCCCCCCccc----ChHHhhCCCCCcEEEccCCCCccccccCCccchH-HhhcC-CCCCcEEE
Q 004895 638 QIGQ-----LTRLQLLDLSNCSSLVVI----APNVISKLSRLEELYMGDSFSQWDKVEGGSNASL-AELKG-LSKLTTLE 706 (724)
Q Consensus 638 ~i~~-----l~~L~~L~l~~~~~l~~~----~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~L~~-L~~L~~L~ 706 (724)
.+.. .++|++|++++|. +... .+..+..+++|++|++++|.. .+.....+ ..+.. .++|+.|+
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i-----~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRL-----EDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSBC-----HHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCcc-----ccccHHHHHHHHcCCCCceEEEE
Confidence 2221 2466666666643 3322 123355667777777766532 11111112 12222 56788888
Q ss_pred eeccccc
Q 004895 707 IDVRDAE 713 (724)
Q Consensus 707 l~~n~~~ 713 (724)
+++|.++
T Consensus 377 L~~n~i~ 383 (461)
T 1z7x_W 377 LADCDVS 383 (461)
T ss_dssp CTTSCCC
T ss_pred CCCCCCC
Confidence 8888776
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.95 E-value=2.7e-09 Score=99.89 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=54.3
Q ss_pred CCceEEEcCCCcCCCC-CccccCCCCCcEEEcCCcccCCc-c-cccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEcc
Q 004895 575 EELKVLDFTGIRFSPL-PSSLGRLINLQTLCLDGWRLEDI-A-IVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDL 650 (724)
Q Consensus 575 ~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~l~~~-~-~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l 650 (724)
+.|++|++++|.+..+ |..+..+.+|++|+|++|.++.+ + .+..+++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 5667777777777755 45667777777777777777662 2 356777777777777777777665 667777777777
Q ss_pred CCC
Q 004895 651 SNC 653 (724)
Q Consensus 651 ~~~ 653 (724)
++|
T Consensus 113 ~~N 115 (174)
T 2r9u_A 113 YNN 115 (174)
T ss_dssp CSS
T ss_pred CCC
Confidence 773
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.93 E-value=2.9e-09 Score=110.79 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=115.2
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhh
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDL 236 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 236 (724)
.....++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++.......-...+.++.+...+...+ +..+
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~--- 97 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVI-REKV--- 97 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTT-HHHH---
T ss_pred CCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHH-HHHH---
Confidence 345668899999999999988776666999999999999999999998643211011333333221111111 0000
Q ss_pred CCCCCCCchhHHHHHHHHHH--HhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccchh-h
Q 004895 237 GMNFDSNDLIYHRAKQLCQR--LKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL-C 311 (724)
Q Consensus 237 ~~~~~~~~~~~~~~~~l~~~--l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~-~ 311 (724)
...... +..+++.++|+||++... .++.+...+.. ...++++|+||...... .
T Consensus 98 --------------~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~--------~~~~~~~i~~~~~~~~l~~ 155 (327)
T 1iqp_A 98 --------------KEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM--------FSSNVRFILSCNYSSKIIE 155 (327)
T ss_dssp --------------HHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCGGGSCH
T ss_pred --------------HHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh--------cCCCCeEEEEeCCccccCH
Confidence 000000 111467899999997652 23333222222 33567888888765321 1
Q ss_pred hhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHh
Q 004895 312 IDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANAL 372 (724)
Q Consensus 312 ~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 372 (724)
........+.+.+++.++..+++...+...... --++..+.|++.++|.|..+..+...+
T Consensus 156 ~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 156 PIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLE-LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp HHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCE-ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 111223478999999999999999877532211 114677899999999998665544433
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.88 E-value=6.8e-09 Score=96.77 Aligned_cols=79 Identities=28% Similarity=0.382 Sum_probs=51.4
Q ss_pred CCceEEEcCCCcCCCC-CccccCCCCCcEEEcCCcccCCc--ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEcc
Q 004895 575 EELKVLDFTGIRFSPL-PSSLGRLINLQTLCLDGWRLEDI--AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDL 650 (724)
Q Consensus 575 ~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l 650 (724)
+.|+.|++++|.+..+ |..+..+.+|++|+|++|.++.+ ..+..+++|++|+|++|.++.+|.. +..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 4566666666666655 44566667777777777766662 2356667777777777777766654 666777777777
Q ss_pred CCC
Q 004895 651 SNC 653 (724)
Q Consensus 651 ~~~ 653 (724)
++|
T Consensus 110 ~~N 112 (170)
T 3g39_A 110 LNN 112 (170)
T ss_dssp CSS
T ss_pred CCC
Confidence 663
No 151
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.84 E-value=7.4e-09 Score=107.89 Aligned_cols=162 Identities=19% Similarity=0.175 Sum_probs=118.2
Q ss_pred CCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcEEEcCCccc-------CC-------
Q 004895 548 CPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQTLCLDGWRL-------ED------- 612 (724)
Q Consensus 548 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l-------~~------- 612 (724)
|++|+.|.+ .. ....+++..|.++++|+.|++++|.+..++ ..+..+.++.++.+..+.. ..
T Consensus 100 ~~~L~~l~L--~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVIL--SE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CB--CT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEEC--Cc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 788888888 22 556677788888888999998888876553 3455566666665544110 00
Q ss_pred ------------------------c-----------------ccc-cCCCCCcEEEccCCcCcccchh-hhcCCCCCeEc
Q 004895 613 ------------------------I-----------------AIV-GQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLD 649 (724)
Q Consensus 613 ------------------------~-----------------~~~-~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~ 649 (724)
+ ..+ ..+++|++|++++|.++.+|.. +..+++|+.|+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 0 000 1378999999999999999876 88999999999
Q ss_pred cCCCCCCcccChHHhhCCCCCc-EEEccCCCCccccccCCccchHHhhcCCCCCcEEEeecccccccccccccCC
Q 004895 650 LSNCSSLVVIAPNVISKLSRLE-ELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIWSLGN 723 (724)
Q Consensus 650 l~~~~~l~~~~~~~i~~l~~L~-~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~~~~n 723 (724)
++++ +..+++..+..+++|+ .+.+..+ +... .-..+.++++|+.|+++.|.++.++...|.++
T Consensus 257 l~~n--i~~I~~~aF~~~~~L~~~l~l~~~------l~~I---~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~ 320 (329)
T 3sb4_A 257 LPHN--LKTIGQRVFSNCGRLAGTLELPAS------VTAI---EFGAFMGCDNLRYVLATGDKITTLGDELFGNG 320 (329)
T ss_dssp CCTT--CCEECTTTTTTCTTCCEEEEECTT------CCEE---CTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred CCcc--cceehHHHhhCChhccEEEEEccc------ceEE---chhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence 9983 8889999999999999 9998763 1111 11356688899999999999999998877654
No 152
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.83 E-value=3.9e-08 Score=101.84 Aligned_cols=187 Identities=12% Similarity=0.135 Sum_probs=114.6
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
|.....++|++..++.+.+++..+..+.+.++|++|+|||++|+.+++.......-..++.++.+...+...+.
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~------ 86 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR------ 86 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSS------
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHH------
Confidence 34456788999999999998876665568999999999999999999986321100113344443322111110
Q ss_pred hCCCCCCCchhHHHHHHHHHH--HhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccch-h
Q 004895 236 LGMNFDSNDLIYHRAKQLCQR--LKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL-L 310 (724)
Q Consensus 236 l~~~~~~~~~~~~~~~~l~~~--l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-~ 310 (724)
......... +..+++.++|+|+++... ..+.+...+.. ...++.+|+||....- .
T Consensus 87 ------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~--------~~~~~~~i~~~~~~~~l~ 146 (319)
T 2chq_A 87 ------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM--------YSKSCRFILSCNYVSRII 146 (319)
T ss_dssp ------------HHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS--------SSSSEEEEEEESCGGGSC
T ss_pred ------------HHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh--------cCCCCeEEEEeCChhhcc
Confidence 011111100 012467899999997652 23333333322 3456778877765432 1
Q ss_pred hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHH
Q 004895 311 CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVA 369 (724)
Q Consensus 311 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 369 (724)
..-......+.+.+++.++..+++...+...... --++....|++.++|.+..+....
T Consensus 147 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 147 EPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCC-BCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1112334589999999999999999887533221 124577889999999998654433
No 153
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.79 E-value=1.1e-07 Score=96.80 Aligned_cols=174 Identities=9% Similarity=0.077 Sum_probs=105.8
Q ss_pred cccchHHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccC---C-C-eEEEEEEecCCChHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALK----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV---F-D-KVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~vs~~~~~~~l~~~ 231 (724)
.+.||++++++|...|. .+..+.+.|+|++|+|||++++.|++....... . + .++++++....+...++..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~ 100 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEK 100 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHH
Confidence 36799999999987775 567788999999999999999999999864221 1 1 2556666677788899999
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHH--hcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccch
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRL--KKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL 309 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l--~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 309 (724)
|++++................++..+ ..+++++++||+++....-+.+...+.+ ......+ ..||.++...+.
T Consensus 101 I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~----~~~~~s~-~~vI~i~n~~d~ 175 (318)
T 3te6_A 101 IWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKW----ISSKNSK-LSIICVGGHNVT 175 (318)
T ss_dssp HHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHH----HHCSSCC-EEEEEECCSSCC
T ss_pred HHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhc----ccccCCc-EEEEEEecCccc
Confidence 99999543211111223334444443 2357899999999765421111111100 0000112 224444433322
Q ss_pred hhh-------hcCCCceEecCCCCHHHHHHHHHHHhC
Q 004895 310 LCI-------DMNSQKMFWIDALSEEEALQLFEKIVG 339 (724)
Q Consensus 310 ~~~-------~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 339 (724)
... ..-....+.+++++.+|..+++.+++.
T Consensus 176 ~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 100 011125789999999999999999874
No 154
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.78 E-value=1.5e-08 Score=106.40 Aligned_cols=88 Identities=23% Similarity=0.145 Sum_probs=51.3
Q ss_pred ccccchhhhcCCCCceEEEcCC-CcCCCCC-ccccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCcccchh
Q 004895 563 TLQISDHFFEGTEELKVLDFTG-IRFSPLP-SSLGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQLPLQ 638 (724)
Q Consensus 563 ~~~~~~~~~~~l~~L~~L~l~~-~~~~~lp-~~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~ 638 (724)
...+|. +..+++|+.|+|++ |.+..+| ..|+.|.+|++|+|++|.++. +..|.+|++|++|+|++|.++.+|..
T Consensus 21 l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 344454 55566666666664 6666554 346666666666666666655 23456666666666666666666555
Q ss_pred hhcCCCCCeEccCC
Q 004895 639 IGQLTRLQLLDLSN 652 (724)
Q Consensus 639 i~~l~~L~~L~l~~ 652 (724)
+.....|+.|++.+
T Consensus 99 ~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 99 TVQGLSLQELVLSG 112 (347)
T ss_dssp TTCSCCCCEEECCS
T ss_pred HcccCCceEEEeeC
Confidence 43333366666665
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.77 E-value=2.4e-09 Score=113.24 Aligned_cols=180 Identities=14% Similarity=0.037 Sum_probs=110.4
Q ss_pred ccCceEEeccCCCcccCC-----Ccc--cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCC-Cccc---
Q 004895 526 QKGPIAISLPYRDIQELP-----ERL--ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPL-PSSL--- 594 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~-----~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i--- 594 (724)
...++.+++++|.+.... ..+ .+++|+.|++..+. -.......+...+++|+.|+|++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 568899999999875421 111 23688898883222 11112223344566889999999988732 1222
Q ss_pred --cCCCCCcEEEcCCcccCC--c----ccccCCCCCcEEEccCCcCcc-----cchhhhcCCCCCeEccCCCCCCcccC-
Q 004895 595 --GRLINLQTLCLDGWRLED--I----AIVGQLKKLEILSLRGAEIKQ-----LPLQIGQLTRLQLLDLSNCSSLVVIA- 660 (724)
Q Consensus 595 --~~l~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~~~- 660 (724)
....+|++|+|++|.++. . ..+..+++|++|+|++|.++. ++..+...++|++|++++| .++...
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~ 228 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAA 228 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHH
Confidence 245789999999998765 1 345678889999999998763 3566777889999999985 444322
Q ss_pred ---hHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCC--CcEEE--eecccc
Q 004895 661 ---PNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSK--LTTLE--IDVRDA 712 (724)
Q Consensus 661 ---~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~--L~~L~--l~~n~~ 712 (724)
...+...++|++|++++|.+ +......+..+..... |+.+. +..+.+
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i-----~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNEL-----SSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSC-----CHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHHHhCCCCCEEeccCCCC-----CHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 22355678899999988743 2222223444443332 66666 555554
No 156
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.76 E-value=1.3e-07 Score=100.28 Aligned_cols=195 Identities=13% Similarity=0.162 Sum_probs=111.6
Q ss_pred ccccccchHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhh
Q 004895 158 DYNIFNSRKKIFQDVIEALKDDK-LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDL 236 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 236 (724)
....++||+..++.+..++..+. ...+.|+|++|+||||+|+.+++.......+.. ..+..-.-...+....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~-------~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA-------TPCGVCDNCREIEQGR 86 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCS-------SCCSSSHHHHHHHTSC
T ss_pred chhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCC-------CCCcccHHHHHHhccC
Confidence 34568999999999999887544 357889999999999999999987743211100 0000000011111100
Q ss_pred CCC-----CCCCchhHHHHHHHHHHHh----cCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEec
Q 004895 237 GMN-----FDSNDLIYHRAKQLCQRLK----KEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSR 305 (724)
Q Consensus 237 ~~~-----~~~~~~~~~~~~~l~~~l~----~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR 305 (724)
... ..... ..+....+.+.+. .+++.++|+||++... ..+.+...+.. ...+..+|++|.
T Consensus 87 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~--------~~~~~~~Il~~~ 157 (373)
T 1jr3_A 87 FVDLIEIDAASRT-KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE--------PPEHVKFLLATT 157 (373)
T ss_dssp CSSCEEEETTCSC-CSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS--------CCSSEEEEEEES
T ss_pred CCceEEecccccC-CHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc--------CCCceEEEEEeC
Confidence 000 00000 0011222333322 2457899999997642 23333222222 234566777766
Q ss_pred ccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHH
Q 004895 306 SRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVA 369 (724)
Q Consensus 306 ~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 369 (724)
... +..........+++.+++.++..+++.+.+...... --.+....|++.++|.|..+..+.
T Consensus 158 ~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~-~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 158 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIA-HEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred ChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 443 211112334689999999999999998876422111 114567889999999998776554
No 157
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.64 E-value=1.4e-07 Score=89.48 Aligned_cols=153 Identities=16% Similarity=0.230 Sum_probs=87.6
Q ss_pred cccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccC-----CCeEEEEEEecCCChHHHHHHHH
Q 004895 159 YNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV-----FDKVVMAEITKNPDAQKIQGELA 233 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~-----F~~~~wv~vs~~~~~~~l~~~i~ 233 (724)
...++||+++++.+.+.+.....+.+.|+|++|+|||++|+.+++....... ...+++++++. + .
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~----~ 90 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA------L----V 90 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH------H----H
T ss_pred ccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHH------H----h
Confidence 4568899999999999988766678899999999999999999998754211 12244444321 1 1
Q ss_pred HhhCCCCCCCchhHHHHHHHHHHH-hcCCcEEEEEccccccc---------cccccccccCCCCcCCCCCCCCCcEEEEE
Q 004895 234 SDLGMNFDSNDLIYHRAKQLCQRL-KKEKRVLIILDNIWTKL---------ELDKIGIPYGDVDEKDKNDDPRRCTIILT 303 (724)
Q Consensus 234 ~~l~~~~~~~~~~~~~~~~l~~~l-~~~kr~LlVlDdv~~~~---------~~~~l~~~~~~~~~~~~~~~~~~s~ilvT 303 (724)
.. .. ...........+...+ ..+++.+|||||++... .+..+...+. ...+..+|+|
T Consensus 91 ~~--~~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~---------~~~~~~~i~~ 157 (195)
T 1jbk_A 91 AG--AK--YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL---------ARGELHCVGA 157 (195)
T ss_dssp TT--TC--SHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHH---------HTTSCCEEEE
T ss_pred cc--CC--ccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhh---------ccCCeEEEEe
Confidence 00 00 0000111222333333 23567899999997642 1111111111 1234456666
Q ss_pred ecccch------hhhhcCCCceEecCCCCHHHHHHHH
Q 004895 304 SRSRDL------LCIDMNSQKMFWIDALSEEEALQLF 334 (724)
Q Consensus 304 tR~~~v------~~~~~~~~~~~~l~~L~~~e~~~Lf 334 (724)
|..... ..........+.+.+++.++..+++
T Consensus 158 ~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 158 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp ECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 665431 1111223346889999988876654
No 158
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.62 E-value=4.3e-08 Score=110.94 Aligned_cols=150 Identities=14% Similarity=0.096 Sum_probs=82.2
Q ss_pred ccCceEEeccCCCcccCCC-----c-ccCCCccEEEEeccccc--ccccchhhhcCCCCceEEEcCCCcCCCCCccccCC
Q 004895 526 QKGPIAISLPYRDIQELPE-----R-LECPQLKLFLLFAKYDS--TLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRL 597 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~-----~-~~~~~Lr~L~l~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l 597 (724)
..++++|++.+|.+..... . ..+++|++|.+..+... ........+.++++|+.|++++|.+..+|..+..+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 4677888888776533211 1 25677888877322211 01122334566788888888888777777777777
Q ss_pred CCCcEEEcCCcccC----C-cccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCccc-ChHHhhCCCCCc
Q 004895 598 INLQTLCLDGWRLE----D-IAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVI-APNVISKLSRLE 671 (724)
Q Consensus 598 ~~L~~L~L~~~~l~----~-~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~-~~~~i~~l~~L~ 671 (724)
++|++|+++.+... . +..+..+++|+.|+++++....+|..+..+++|++|++++|. +... +...+..+++|+
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLE 321 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCC
Confidence 77777777643211 0 234455555555555554444555555555555555555543 2211 112234555555
Q ss_pred EEEcc
Q 004895 672 ELYMG 676 (724)
Q Consensus 672 ~L~l~ 676 (724)
+|++.
T Consensus 322 ~L~L~ 326 (592)
T 3ogk_B 322 VLETR 326 (592)
T ss_dssp EEEEE
T ss_pred EEecc
Confidence 55544
No 159
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.61 E-value=2.1e-08 Score=113.46 Aligned_cols=125 Identities=16% Similarity=0.121 Sum_probs=69.1
Q ss_pred cCceEEeccCCCcccC-CCcc--cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCC-----CCccccCCC
Q 004895 527 KGPIAISLPYRDIQEL-PERL--ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSP-----LPSSLGRLI 598 (724)
Q Consensus 527 ~~~~~l~l~~~~~~~~-~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----lp~~i~~l~ 598 (724)
.++++|.+.++.+... +... .+++|++|.+..+...........+.++++|++|++++|.+.. ++.....++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 4677777776655321 1111 4677777777432111111123344567777777777776552 222223556
Q ss_pred CCcEEEcCCcc--cCC--c-ccccCCCCCcEEEccCC-cCcccchhhhcCCCCCeEccC
Q 004895 599 NLQTLCLDGWR--LED--I-AIVGQLKKLEILSLRGA-EIKQLPLQIGQLTRLQLLDLS 651 (724)
Q Consensus 599 ~L~~L~L~~~~--l~~--~-~~~~~l~~L~~L~l~~~-~i~~lp~~i~~l~~L~~L~l~ 651 (724)
+|++|++++|. +.. + ..+..+++|++|++++| .+..+|..+.++++|++|+++
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 77777777775 221 1 12344677777777776 444555556666666666543
No 160
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.59 E-value=1.3e-08 Score=107.42 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=45.1
Q ss_pred CCceEEEcCCCcCCC--CCccccCCCCCcEEEcCCcccCC--cccc-----cCCCCCcEEEccCCcCcc-----cchhhh
Q 004895 575 EELKVLDFTGIRFSP--LPSSLGRLINLQTLCLDGWRLED--IAIV-----GQLKKLEILSLRGAEIKQ-----LPLQIG 640 (724)
Q Consensus 575 ~~L~~L~l~~~~~~~--lp~~i~~l~~L~~L~L~~~~l~~--~~~~-----~~l~~L~~L~l~~~~i~~-----lp~~i~ 640 (724)
+.|+.|+|++|.+.. +..-...+.+|++|+|++|.++. ...+ ...++|++|+|++|.++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 455555555555441 11111223445555555555543 1111 123455555555555432 233344
Q ss_pred cCCCCCeEccCCCCCCcccC----hHHhhCCCCCcEEEccCC
Q 004895 641 QLTRLQLLDLSNCSSLVVIA----PNVISKLSRLEELYMGDS 678 (724)
Q Consensus 641 ~l~~L~~L~l~~~~~l~~~~----~~~i~~l~~L~~L~l~~~ 678 (724)
.+++|++|+|++| .+.... ...+..+++|++|++++|
T Consensus 181 ~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 181 GNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp TCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred cCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 4555555555553 232211 122344455555555554
No 161
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.59 E-value=2.1e-07 Score=97.80 Aligned_cols=197 Identities=13% Similarity=0.109 Sum_probs=113.8
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCC-CeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVF-DKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|+++.++.+..++..+..+.+.|+|++|+||||+|+.+++.......+ ..+..++.+.......+. +.+.
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 111 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR-EKVK 111 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT-THHH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH-HHHH
Confidence 44456788999999999999887655558999999999999999999986421111 123444444433333221 2111
Q ss_pred hhC-CCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccc-hh
Q 004895 235 DLG-MNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD-LL 310 (724)
Q Consensus 235 ~l~-~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~ 310 (724)
.+. ....... .. .......+++-+|++|++.... ..+.+...+.. .....++|++|.... +.
T Consensus 112 ~~~~~~~~~~~-~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~--------~~~~~~~il~~~~~~~l~ 177 (353)
T 1sxj_D 112 NFARLTVSKPS-KH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMET--------YSGVTRFCLICNYVTRII 177 (353)
T ss_dssp HHHHSCCCCCC-TT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCGGGSC
T ss_pred HHhhhcccccc-hh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHh--------cCCCceEEEEeCchhhCc
Confidence 111 0000000 00 0001112355799999986542 22222222221 223456777665443 21
Q ss_pred hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 311 CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 311 ~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
.........+.+.+++.++....+.+.+...... --++..+.|++.++|.|..+..+
T Consensus 178 ~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~-i~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 178 DPLASQCSKFRFKALDASNAIDRLRFISEQENVK-CDDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHTSSCHHHHHHH
T ss_pred chhhccCceEEeCCCCHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1111223478999999999999999877432211 12567889999999999865443
No 162
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.57 E-value=9.8e-08 Score=99.99 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=111.1
Q ss_pred ccCceEEeccCCCcc--c-------CCC-cccCCCccEEEEeccccc---c----cccchhhhcCCCCceEEEcCCCcCC
Q 004895 526 QKGPIAISLPYRDIQ--E-------LPE-RLECPQLKLFLLFAKYDS---T----LQISDHFFEGTEELKVLDFTGIRFS 588 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~--~-------~~~-~~~~~~Lr~L~l~~~~~~---~----~~~~~~~~~~l~~L~~L~l~~~~~~ 588 (724)
+..++.|.+...... . +.. ...+++|++|.+...... . ..-....+..+++|+.|++++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 456777777644432 1 111 124689999988321111 0 0113356788899999999988433
Q ss_pred CCCccccCCCCCcEEEcCCcccCC--ccccc--CCCCCcEEEccCC--c------Ccccchhh--hcCCCCCeEccCCCC
Q 004895 589 PLPSSLGRLINLQTLCLDGWRLED--IAIVG--QLKKLEILSLRGA--E------IKQLPLQI--GQLTRLQLLDLSNCS 654 (724)
Q Consensus 589 ~lp~~i~~l~~L~~L~L~~~~l~~--~~~~~--~l~~L~~L~l~~~--~------i~~lp~~i--~~l~~L~~L~l~~~~ 654 (724)
.+|. +. +.+|++|+|..|.+.. ...++ .+++|++|+|+.+ . +..+...+ ..+++|++|.+.+|.
T Consensus 186 ~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 5554 43 8899999999888765 34444 7899999998632 1 22222222 357899999998865
Q ss_pred CCcccChHHh---hCCCCCcEEEccCCCCccccccCCccch-HHhhcCCCCCcEEEeeccccc
Q 004895 655 SLVVIAPNVI---SKLSRLEELYMGDSFSQWDKVEGGSNAS-LAELKGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 655 ~l~~~~~~~i---~~l~~L~~L~l~~~~~~~~~~~~~~~~~-l~~L~~L~~L~~L~l~~n~~~ 713 (724)
.....+ ..+ +.+++|++|+++.|.. .+..... ...+.++++|+.|+++.|.++
T Consensus 264 i~~~~~-~~la~a~~~~~L~~LdLs~n~L-----~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 264 EQNVVV-EMFLESDILPQLETMDISAGVL-----TDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp THHHHH-HHHHHCSSGGGCSEEECCSSCC-----BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CchHHH-HHHHhCccCCCCCEEECCCCCC-----ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 322221 222 3578999999987642 2111112 223466789999999988764
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.55 E-value=1.2e-07 Score=99.58 Aligned_cols=101 Identities=17% Similarity=0.131 Sum_probs=73.5
Q ss_pred EEeccCC-CcccCCCcccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcEEEcCCc
Q 004895 531 AISLPYR-DIQELPERLECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQTLCLDGW 608 (724)
Q Consensus 531 ~l~l~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~ 608 (724)
.+..+++ .+..+|....+++|+.|.+ .+.+....++...|.++++|+.|+|++|.+..+| ..|.+|.+|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l-~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYI-ENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEEC-CSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEc-cCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3556666 6777777335677888888 2235666777777888888888888888888654 46788888888888888
Q ss_pred ccCC-ccc-ccCCCCCcEEEccCCcCc
Q 004895 609 RLED-IAI-VGQLKKLEILSLRGAEIK 633 (724)
Q Consensus 609 ~l~~-~~~-~~~l~~L~~L~l~~~~i~ 633 (724)
.++. |+. +..+. |++|+|.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8877 333 44444 888888888776
No 164
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.54 E-value=9.6e-08 Score=108.05 Aligned_cols=55 Identities=20% Similarity=0.182 Sum_probs=23.8
Q ss_pred CCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCC--c-ccccCCCCCcEEEcc
Q 004895 574 TEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLED--I-AIVGQLKKLEILSLR 628 (724)
Q Consensus 574 l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~--~-~~~~~l~~L~~L~l~ 628 (724)
+++|+.|+++++....+|..+..+++|++|+|++|.+.. + ..+..+++|++|+++
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 334444444443333344444444555555555554333 1 223444444444444
No 165
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.54 E-value=1.8e-06 Score=87.58 Aligned_cols=184 Identities=20% Similarity=0.188 Sum_probs=105.8
Q ss_pred ccccccchHHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 158 DYNIFNSRKKIFQDVIEALKD-------------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
....++|.++.++.|.+.+.. ....-+.|+|++|+|||+||+.+++..... .+.+..+.-..
T Consensus 15 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~-----~~~v~~~~~~~ 89 (285)
T 3h4m_A 15 RYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNAT-----FIRVVGSELVK 89 (285)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCE-----EEEEEGGGGCC
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehHHHHH
Confidence 456788999999988877641 345678999999999999999999876321 33333322111
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc------------c-ccccccccCCCCcCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL------------E-LDKIGIPYGDVDEKDK 291 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~------------~-~~~l~~~~~~~~~~~~ 291 (724)
.... . .......+.......++.+|+|||++... . ...+...+.. ...
T Consensus 90 --------------~~~~-~-~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~---~~~ 150 (285)
T 3h4m_A 90 --------------KFIG-E-GASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAE---MDG 150 (285)
T ss_dssp --------------CSTT-H-HHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHH---HHT
T ss_pred --------------hccc-h-HHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHH---hhC
Confidence 0101 0 12233344444444567899999996531 0 0111000000 000
Q ss_pred CCCCCCcEEEEEecccchhh-hhc---CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCC-chhHHH
Q 004895 292 NDDPRRCTIILTSRSRDLLC-IDM---NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGG-LPVALS 366 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~~~v~~-~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~ 366 (724)
.....+..||.||....... ... .....+.++..+.++..++|+..+.......+ .....+++.+.| .|-.+.
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED--VNLEEIAKMTEGCVGAELK 228 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHHCTTCCHHHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc--CCHHHHHHHcCCCCHHHHH
Confidence 01234567788887554321 101 22347899999999999999988764322221 125677888877 444444
Q ss_pred H
Q 004895 367 T 367 (724)
Q Consensus 367 ~ 367 (724)
.
T Consensus 229 ~ 229 (285)
T 3h4m_A 229 A 229 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 166
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.52 E-value=3e-06 Score=87.68 Aligned_cols=184 Identities=16% Similarity=0.113 Sum_probs=108.0
Q ss_pred ccccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHH
Q 004895 158 DYNIFNSRKKIFQDVIEALK-----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 232 (724)
....|+|++..+..+..++. ......+.|+|++|+|||++|+.+++.... ..++++.+......++.
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~-----~~~~~~~~~~~~~~~l~--- 81 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-----NLRVTSGPAIEKPGDLA--- 81 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC-----CEEEECTTTCCSHHHHH---
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEeccccCChHHHH---
Confidence 45678999999888887765 234467889999999999999999987632 23445443332222221
Q ss_pred HHhhCCCCCCCchhHHHHHHHHHHHhc--CCcEEEEEcccccccc--ccccccccCC-----CCcCCCC-----CCCCCc
Q 004895 233 ASDLGMNFDSNDLIYHRAKQLCQRLKK--EKRVLIILDNIWTKLE--LDKIGIPYGD-----VDEKDKN-----DDPRRC 298 (724)
Q Consensus 233 ~~~l~~~~~~~~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~~~~--~~~l~~~~~~-----~~~~~~~-----~~~~~s 298 (724)
..+.. .++.+|+|||+..... ...+...+.. +...... ....+.
T Consensus 82 ----------------------~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 82 ----------------------AILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp ----------------------HHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred ----------------------HHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 11111 3457888999865421 1111000000 0000000 001235
Q ss_pred EEEEEecccchh-hhhcCC-CceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHHHHh
Q 004895 299 TIILTSRSRDLL-CIDMNS-QKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVANAL 372 (724)
Q Consensus 299 ~ilvTtR~~~v~-~~~~~~-~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~~~l 372 (724)
.+|.||...... ...... ...+.+.+++.+|..+++.+.+...... --++..+.|++.++|.|..+..+...+
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR-ITEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 566666644321 111112 2578999999999999999887532221 225678899999999998877665544
No 167
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.52 E-value=2.4e-06 Score=91.96 Aligned_cols=179 Identities=17% Similarity=0.203 Sum_probs=108.2
Q ss_pred CcccccccchHHHH---HHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHH
Q 004895 156 MKDYNIFNSRKKIF---QDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGE 231 (724)
Q Consensus 156 ~~~~~~~~gR~~~~---~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~ 231 (724)
+.....++|.+..+ ..+...+..+..+.+.|+|++|+||||+|+.+++..... ++.++.. ....++ +.
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~-------f~~l~a~~~~~~~i-r~ 93 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANAD-------VERISAVTSGVKEI-RE 93 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCE-------EEEEETTTCCHHHH-HH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCC-------eEEEEeccCCHHHH-HH
Confidence 44566788999888 677777777777889999999999999999999876321 3333322 222222 11
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEE-Eecccc
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIIL-TSRSRD 308 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilv-TtR~~~ 308 (724)
++. ........+++.+|++|++.... ..+.+...+. .....+|. ||.+..
T Consensus 94 ~~~-----------------~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le----------~~~v~lI~att~n~~ 146 (447)
T 3pvs_A 94 AIE-----------------RARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE----------DGTITFIGATTENPS 146 (447)
T ss_dssp HHH-----------------HHHHHHHTTCCEEEEEETTTCC------CCHHHHH----------TTSCEEEEEESSCGG
T ss_pred HHH-----------------HHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh----------cCceEEEecCCCCcc
Confidence 111 11111223578999999997652 2333322221 12234444 444432
Q ss_pred --hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCC------CCCCchhHHHHHHHHhCCchhHHHHHH
Q 004895 309 --LLCIDMNSQKMFWIDALSEEEALQLFEKIVGEST------KASDFRPLAEEIVGKCGGLPVALSTVA 369 (724)
Q Consensus 309 --v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~------~~~~l~~~~~~I~~~c~GlPLai~~~~ 369 (724)
+..........+.+.+++.++...++.+.+.... ...--++..+.|++.++|.+-.+..+.
T Consensus 147 ~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 147 FELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp GSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred cccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 1111233445889999999999999998874311 111124677889999999887654443
No 168
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.50 E-value=4e-07 Score=89.84 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=103.6
Q ss_pred cccccch---HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 159 YNIFNSR---KKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 159 ~~~~~gR---~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
...|+|+ +..++.+..+......+.+.|+|++|+||||||+.+++..... ...+.|++++...+. +.+
T Consensus 27 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~--~~~~~~~~~~~~~~~------~~~- 97 (242)
T 3bos_A 27 FTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL--ERRSFYIPLGIHASI------STA- 97 (242)
T ss_dssp TTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEGGGGGGS------CGG-
T ss_pred hhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHH------HHH-
Confidence 3455652 3566666666655567789999999999999999999987653 234667766432110 000
Q ss_pred hCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc----ccccccccCCCCcCCCCCCCCCcEEEEEecccch--
Q 004895 236 LGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE----LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL-- 309 (724)
Q Consensus 236 l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-- 309 (724)
....+ .++.+||+||++.... .+.+...+... ......++|+||+...-
T Consensus 98 -----------------~~~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~------~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 98 -----------------LLEGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRV------AEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp -----------------GGTTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHH------HHHCSCEEEEEESSCTTTT
T ss_pred -----------------HHHhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHH------HHcCCCeEEEEcCCCHHHH
Confidence 00111 2457999999976522 11221111000 01112247777774431
Q ss_pred ----hhh--hcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHH
Q 004895 310 ----LCI--DMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVA 369 (724)
Q Consensus 310 ----~~~--~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 369 (724)
... .......+.+++++.++..+++.+.+..... .--++..+.|++.++|.+-.+..+.
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 000 0111268999999999999999988742211 1225678889999999887665443
No 169
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.49 E-value=4.8e-06 Score=83.81 Aligned_cols=199 Identities=17% Similarity=0.131 Sum_probs=103.7
Q ss_pred cccchHHHHHHHHH-------Hhc---CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHH
Q 004895 161 IFNSRKKIFQDVIE-------ALK---DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQG 230 (724)
Q Consensus 161 ~~~gR~~~~~~l~~-------~L~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 230 (724)
.++|....++++++ .+. ......+.|+|++|+|||++|+.+++.... . .+.++.+...
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~----~-~~~i~~~~~~------- 101 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF----P-FIKICSPDKM------- 101 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC----S-EEEEECGGGC-------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC----C-EEEEeCHHHh-------
Confidence 34565555444444 232 345678899999999999999999997532 1 2233332210
Q ss_pred HHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc------------ccccccccCCCCcCCCCCCCCCc
Q 004895 231 ELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE------------LDKIGIPYGDVDEKDKNDDPRRC 298 (724)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------------~~~l~~~~~~~~~~~~~~~~~~s 298 (724)
.+. ...........+.......++.+|+|||++.... ++.+...+.. ........
T Consensus 102 -----~g~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~-----~~~~~~~~ 168 (272)
T 1d2n_A 102 -----IGF---SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKK-----APPQGRKL 168 (272)
T ss_dssp -----TTC---CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTC-----CCSTTCEE
T ss_pred -----cCC---chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcC-----ccCCCCCE
Confidence 110 0000111222333333335689999999965310 1111111110 00012234
Q ss_pred EEEEEecccchhhh---hcCCCceEecCCCCH-HHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCC------chhHHHHH
Q 004895 299 TIILTSRSRDLLCI---DMNSQKMFWIDALSE-EEALQLFEKIVGESTKASDFRPLAEEIVGKCGG------LPVALSTV 368 (724)
Q Consensus 299 ~ilvTtR~~~v~~~---~~~~~~~~~l~~L~~-~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G------lPLai~~~ 368 (724)
.||.||........ ...-...+.+++++. ++...++.+... --.+....|++.+.| .+-++.++
T Consensus 169 ~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~~------~~~~~~~~l~~~~~g~~~~g~ir~l~~~l 242 (272)
T 1d2n_A 169 LIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLGN------FKDKERTTIAQQVKGKKVWIGIKKLLMLI 242 (272)
T ss_dssp EEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHTC------SCHHHHHHHHHHHTTSEEEECHHHHHHHH
T ss_pred EEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcCC------CCHHHHHHHHHHhcCCCccccHHHHHHHH
Confidence 46666766533211 111245788999988 666666665321 114567889999988 34444444
Q ss_pred HHHhcCCCHHHHHHHHHHHhcC
Q 004895 369 ANALKNKSPAIWKDALNKLTSS 390 (724)
Q Consensus 369 ~~~l~~~~~~~w~~~~~~l~~~ 390 (724)
-..........+..+++.+...
T Consensus 243 ~~a~~~~~~~~~~~~~~~l~~~ 264 (272)
T 1d2n_A 243 EMSLQMDPEYRVRKFLALLREE 264 (272)
T ss_dssp HHHTTSCGGGHHHHHHHHHHHT
T ss_pred HHHhhhchHHHHHHHHHHHHHc
Confidence 3333333556677777665543
No 170
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.47 E-value=4e-07 Score=94.68 Aligned_cols=167 Identities=13% Similarity=0.114 Sum_probs=119.4
Q ss_pred ccCceEEeccCCCcccCCCc--ccCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcC-------C--------
Q 004895 526 QKGPIAISLPYRDIQELPER--LECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRF-------S-------- 588 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~--~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------~-------- 588 (724)
..+++.+.+.. .+..++.. ..|++|+.|.+ ..+....+++..|.++..+..+.+..... .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l--~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQI--RKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEB--CCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEc--CCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 35777888876 77777643 37899999998 34444567777777777777776654211 0
Q ss_pred ------------CCCc----------cc------------------cCCCCCcEEEcCCcccCCc--ccccCCCCCcEEE
Q 004895 589 ------------PLPS----------SL------------------GRLINLQTLCLDGWRLEDI--AIVGQLKKLEILS 626 (724)
Q Consensus 589 ------------~lp~----------~i------------------~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~ 626 (724)
.+|. .+ ..+.+|++|+|++|.++.+ ..|.++.+|+.|+
T Consensus 177 ~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~ 256 (329)
T 3sb4_A 177 PLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIK 256 (329)
T ss_dssp CCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEE
T ss_pred ccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEE
Confidence 0000 00 1378999999999998884 5699999999999
Q ss_pred ccCCcCcccchh-hhcCCCCC-eEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcE
Q 004895 627 LRGAEIKQLPLQ-IGQLTRLQ-LLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTT 704 (724)
Q Consensus 627 l~~~~i~~lp~~-i~~l~~L~-~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~ 704 (724)
+..| ++.++.. +..+++|+ .+.+.+ .+..+++..+..|++|+.|++.++.. ..... ..+.++++|+.
T Consensus 257 l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~i-----~~I~~---~aF~~~~~L~~ 325 (329)
T 3sb4_A 257 LPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDKI-----TTLGD---ELFGNGVPSKL 325 (329)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSCC-----CEECT---TTTCTTCCCCE
T ss_pred CCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCcc-----Cccch---hhhcCCcchhh
Confidence 9997 8888765 88999999 999987 67888888899999999999976532 21111 24566777877
Q ss_pred EE
Q 004895 705 LE 706 (724)
Q Consensus 705 L~ 706 (724)
+.
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 65
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=1.3e-06 Score=96.45 Aligned_cols=194 Identities=11% Similarity=0.076 Sum_probs=110.7
Q ss_pred CcccccccchHHHHHHHHHHhcC-----------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEE
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKD-----------------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAE 218 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~-----------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 218 (724)
|.....++|+++.++.+.+++.. +..+.+.|+|++|+||||+|+.+++... + .++.++
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~----~-~~i~in 109 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG----Y-DILEQN 109 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT----C-EEEEEC
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC----C-CEEEEe
Confidence 45567789999999999999863 1347899999999999999999998772 1 244555
Q ss_pred EecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-----ccccccccCCCCcCCCCC
Q 004895 219 ITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-----LDKIGIPYGDVDEKDKND 293 (724)
Q Consensus 219 vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~~~~~~ 293 (724)
++...... +....+........-......... .....+++.+||+|+++.... +..+...+
T Consensus 110 ~s~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l---------- 175 (516)
T 1sxj_A 110 ASDVRSKT-LLNAGVKNALDNMSVVGYFKHNEE---AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC---------- 175 (516)
T ss_dssp TTSCCCHH-HHHHTGGGGTTBCCSTTTTTC-------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH----------
T ss_pred CCCcchHH-HHHHHHHHHhccccHHHHHhhhhh---hhhccCCCeEEEEECCCccchhhHHHHHHHHHHH----------
Confidence 55544433 223322222111000000000000 001125679999999976532 12221111
Q ss_pred CCCCcEEEEEecccch--hhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch-hHHHHHH
Q 004895 294 DPRRCTIILTSRSRDL--LCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP-VALSTVA 369 (724)
Q Consensus 294 ~~~~s~ilvTtR~~~v--~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP-Lai~~~~ 369 (724)
...+..||+++..... ..........+.+++++.++..+++.+.+......- -++....|++.++|.+ -++..+.
T Consensus 176 ~~~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i-~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 176 RKTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKL-DPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HHCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCC-CTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred HhcCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 1123335555544321 111123345789999999999999988764221111 1346788999999954 4555543
No 172
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.42 E-value=1.1e-05 Score=84.69 Aligned_cols=187 Identities=12% Similarity=0.098 Sum_probs=106.5
Q ss_pred ccccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 158 DYNIFNSRKKIFQDVIEALK------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
....++|.+..++.|.+.+. ....+.+.|+|++|+|||+||+.+++.... ..+.++++.-..
T Consensus 82 ~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-----~~~~i~~~~l~~- 155 (357)
T 3d8b_A 82 NWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-----TFFSISASSLTS- 155 (357)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC-----EEEEEEGGGGCC-
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC-----eEEEEehHHhhc-
Confidence 34568899999888887763 134568899999999999999999886532 234455442211
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccCCCCcCCCC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-------------LDKIGIPYGDVDEKDKN 292 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~~ 292 (724)
.... . .......+.......++.+|+||+++.... ...+...+... ..
T Consensus 156 -------------~~~g-~-~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~----~~ 216 (357)
T 3d8b_A 156 -------------KWVG-E-GEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGA----TT 216 (357)
T ss_dssp -------------SSTT-H-HHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------
T ss_pred -------------cccc-h-HHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcc----cc
Confidence 0000 0 122233344444445679999999954311 11111111000 00
Q ss_pred CCCCCcEEEEEecccchh--hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCC-chhHHHHHH
Q 004895 293 DDPRRCTIILTSRSRDLL--CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGG-LPVALSTVA 369 (724)
Q Consensus 293 ~~~~~s~ilvTtR~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPLai~~~~ 369 (724)
....+..||.||...... .........+.+...+.++..+++...+...... --.+....|++.+.| .|-.|..+.
T Consensus 217 ~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 217 SSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCC-LSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp -CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBC-CCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCC-ccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 012345566666543221 1111223467888999999999998877432211 124567889999988 455555554
Q ss_pred H
Q 004895 370 N 370 (724)
Q Consensus 370 ~ 370 (724)
.
T Consensus 296 ~ 296 (357)
T 3d8b_A 296 R 296 (357)
T ss_dssp H
T ss_pred H
Confidence 4
No 173
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.42 E-value=9.5e-06 Score=81.04 Aligned_cols=178 Identities=13% Similarity=0.134 Sum_probs=97.0
Q ss_pred cccccchHHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChH
Q 004895 159 YNIFNSRKKIFQDVIEALK---D---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQ 226 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 226 (724)
...++|.+..++.+.+.+. . ...+-+.|+|++|+|||++|+.+++.... ..+.++.+.-.+.
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~~~~~~~~~~- 78 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV-----PFLAMAGAEFVEV- 78 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC-----CEEEEETTTTSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEechHHHHhh-
Confidence 4557788877776655432 1 23456889999999999999999987642 1334444322110
Q ss_pred HHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc-------------cc----cccccccCCCCcC
Q 004895 227 KIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL-------------EL----DKIGIPYGDVDEK 289 (724)
Q Consensus 227 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~-------------~~----~~l~~~~~~~~~~ 289 (724)
.. .. .......+........+.+|+|||++... .. ..+...+..
T Consensus 79 -------------~~-~~-~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~---- 139 (262)
T 2qz4_A 79 -------------IG-GL-GAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDG---- 139 (262)
T ss_dssp -------------ST-TH-HHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHT----
T ss_pred -------------cc-Ch-hHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhC----
Confidence 00 00 12223334444444567999999997541 00 111111100
Q ss_pred CCCCCCCCcEEEEEecccchhhhh-c---CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh
Q 004895 290 DKNDDPRRCTIILTSRSRDLLCID-M---NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV 363 (724)
Q Consensus 290 ~~~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 363 (724)
.....+..||.||......... . .....+.++..+.++-.+++...+...............+++.+.|.+-
T Consensus 140 --~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~ 215 (262)
T 2qz4_A 140 --MGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215 (262)
T ss_dssp --CCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCH
T ss_pred --cCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCH
Confidence 0122355677777554321111 1 2235778999999999999998775322222212234678888887654
No 174
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=1.7e-06 Score=90.78 Aligned_cols=200 Identities=11% Similarity=0.106 Sum_probs=108.5
Q ss_pred CcccccccchHHHHHHHHHHh-cCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccC----CCe-----------------
Q 004895 156 MKDYNIFNSRKKIFQDVIEAL-KDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV----FDK----------------- 213 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L-~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~----------------- 213 (724)
|.....++|++..++.+..++ ..++.+.+.|+|+.|+||||+|+.++........ ++.
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 89 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVS 89 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEE
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeec
Confidence 344567889999999999888 6555444899999999999999999986421110 000
Q ss_pred ---EEEEEEecCC-ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccCCCC
Q 004895 214 ---VVMAEITKNP-DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--LDKIGIPYGDVD 287 (724)
Q Consensus 214 ---~~wv~vs~~~-~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l~~~~~~~~ 287 (724)
.+.+..+... ......++++..+.....-.. .. .+ ..+. .++-++|||++...+. .+.+...+..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~-~l-s~l~-~~~~vlilDE~~~L~~~~~~~L~~~le~-- 160 (354)
T 1sxj_E 90 SPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDF----QD-SK-DGLA-HRYKCVIINEANSLTKDAQAALRRTMEK-- 160 (354)
T ss_dssp CSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH--
T ss_pred ccceEEecHhhcCCcchHHHHHHHHHHHHhccccc----cc-cc-cccC-CCCeEEEEeCccccCHHHHHHHHHHHHh--
Confidence 1111111100 000012223332211110000 00 00 0011 3567999999976421 1222222211
Q ss_pred cCCCCCCCCCcEEEEEecccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHH
Q 004895 288 EKDKNDDPRRCTIILTSRSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 288 ~~~~~~~~~~s~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~ 366 (724)
...++.+|++|.... +...-......+++.+++.++..+.+.+.+......-+-++....|++.++|.+..+.
T Consensus 161 ------~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~ 234 (354)
T 1sxj_E 161 ------YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSL 234 (354)
T ss_dssp ------STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHH
T ss_pred ------hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHH
Confidence 223567777776543 2222223447899999999999999998774221110003567889999999987665
Q ss_pred HHHH
Q 004895 367 TVAN 370 (724)
Q Consensus 367 ~~~~ 370 (724)
.+..
T Consensus 235 ~~l~ 238 (354)
T 1sxj_E 235 LMLE 238 (354)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 4443
No 175
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.40 E-value=1.8e-07 Score=105.81 Aligned_cols=129 Identities=20% Similarity=0.202 Sum_probs=91.0
Q ss_pred cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCC-cCCC--CCccccCCCCCcEEEcCCcccCC--cccc----c
Q 004895 547 ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGI-RFSP--LPSSLGRLINLQTLCLDGWRLED--IAIV----G 617 (724)
Q Consensus 547 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~--lp~~i~~l~~L~~L~L~~~~l~~--~~~~----~ 617 (724)
.+++|+.|.+..+. -....+..+...+++|+.|++++| .+.. ++..+.++++|++|+|++|.++. +..+ .
T Consensus 103 ~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 103 SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred hCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 57899999994332 222223333336899999999999 5553 55555689999999999998765 2223 3
Q ss_pred CCCCCcEEEccCCc--Cc--ccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccC
Q 004895 618 QLKKLEILSLRGAE--IK--QLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGD 677 (724)
Q Consensus 618 ~l~~L~~L~l~~~~--i~--~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 677 (724)
.+++|++|++++|. ++ .++.-+.++++|++|++++|..+..+ +..+..+++|++|++..
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l-~~~~~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL-ATLLQRAPQLEELGTGG 244 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH-HHHHHHCTTCSEEECSB
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH-HHHHhcCCcceEccccc
Confidence 67799999999986 33 33444567899999999998665554 34567777777777544
No 176
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.40 E-value=2.1e-05 Score=81.11 Aligned_cols=188 Identities=15% Similarity=0.136 Sum_probs=106.6
Q ss_pred cccccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 157 KDYNIFNSRKKIFQDVIEALK------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
.....+.|.++.++.|.+.+. ....+-+.|+|++|+|||+||+.+++.... ...+.++.+.-.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISSSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEECCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEhHHHHh
Confidence 345667788888777776552 123467899999999999999999987621 1123333332111
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccc-------------cccccccCCCCcCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLEL-------------DKIGIPYGDVDEKDK 291 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~-------------~~l~~~~~~~~~~~~ 291 (724)
..... .......+.......++.+|+||+++....- ..+...+..+
T Consensus 85 --------------~~~g~--~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~----- 143 (322)
T 1xwi_A 85 --------------KWLGE--SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV----- 143 (322)
T ss_dssp --------------SSCCS--CHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCS-----
T ss_pred --------------hhhhH--HHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcc-----
Confidence 11111 1233444555444467899999999754110 0110001000
Q ss_pred CCCCCCcEEEEEecccchh--hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCc-hhHHHHH
Q 004895 292 NDDPRRCTIILTSRSRDLL--CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGL-PVALSTV 368 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 368 (724)
.....+..||.||...... .........+.++..+.++-.+++...+....... -......|++.+.|+ +-.|..+
T Consensus 144 ~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 144 GVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL-TEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp SSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC-CHHHHHHHHHTCTTCCHHHHHHH
T ss_pred cccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 0023445566666544321 11112335788888999999999998875332111 245678899999887 4445554
Q ss_pred HH
Q 004895 369 AN 370 (724)
Q Consensus 369 ~~ 370 (724)
..
T Consensus 223 ~~ 224 (322)
T 1xwi_A 223 VR 224 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 177
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.37 E-value=1.1e-05 Score=83.19 Aligned_cols=187 Identities=15% Similarity=0.148 Sum_probs=108.7
Q ss_pred CcccccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC
Q 004895 156 MKDYNIFNSRKKIFQDVIEALK------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP 223 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (724)
......++|.++.++.|.+.+. ....+-+.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~-----~~~v~~~--- 85 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS--- 85 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCE-----EEEEEHH---
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCC-----EEEEchH---
Confidence 3446678899999998888762 1124578999999999999999999876321 2333322
Q ss_pred ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccCCCCcCC
Q 004895 224 DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-------------LDKIGIPYGDVDEKD 290 (724)
Q Consensus 224 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~ 290 (724)
++ ... .... .......+.......++.+|+||++..... ...+...+...
T Consensus 86 ---~l----~~~----~~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~---- 148 (322)
T 3eie_A 86 ---DL----VSK----WMGE--SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV---- 148 (322)
T ss_dssp ---HH----HTT----TGGG--HHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGG----
T ss_pred ---HH----hhc----ccch--HHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccc----
Confidence 11 110 0001 223344455555556779999999975421 11111111000
Q ss_pred CCCCCCCcEEEEEecccchh--hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCc-hhHHHH
Q 004895 291 KNDDPRRCTIILTSRSRDLL--CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGL-PVALST 367 (724)
Q Consensus 291 ~~~~~~~s~ilvTtR~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~ 367 (724)
.....+..||.||...... .........+.++..+.++-.++|+..+......- -......|++.+.|. +-.|..
T Consensus 149 -~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~-~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 149 -GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVL-TKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp -GTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCC-CHHHHHHHHHTTTTCCHHHHHH
T ss_pred -cccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCC-CHHHHHHHHHHcCCCCHHHHHH
Confidence 0023455666677654321 11112235678888999999999999876432211 245678899998874 444444
Q ss_pred HH
Q 004895 368 VA 369 (724)
Q Consensus 368 ~~ 369 (724)
+.
T Consensus 227 l~ 228 (322)
T 3eie_A 227 VV 228 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 178
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.34 E-value=4.6e-06 Score=86.97 Aligned_cols=182 Identities=12% Similarity=0.122 Sum_probs=105.9
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCC-eEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFD-KVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|.+..++.|..++..++.+.+.++|+.|+||||+|+.+++..... .+. .+..++.+...+...+. +++.
T Consensus 21 p~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~-~~~~~~~~~~~~~~~~~~~ir-~~i~ 98 (340)
T 1sxj_C 21 PETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGK-NYSNMVLELNASDDRGIDVVR-NQIK 98 (340)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTT-SHHHHEEEECTTSCCSHHHHH-THHH
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCC-CccceEEEEcCcccccHHHHH-HHHH
Confidence 44456678999999998888877766558999999999999999999986432 111 12333333222222211 1111
Q ss_pred hhCCCCCCCchhHHHHHHHHHHH--hcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccc-h
Q 004895 235 DLGMNFDSNDLIYHRAKQLCQRL--KKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD-L 309 (724)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~l~~~l--~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v 309 (724)
.+ .+.. ..+.+-++|+|++.... ..+.+...+.. ....+.+|++|.... +
T Consensus 99 ~~-----------------~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~--------~~~~~~~il~~n~~~~i 153 (340)
T 1sxj_C 99 DF-----------------ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIER--------YTKNTRFCVLANYAHKL 153 (340)
T ss_dssp HH-----------------HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH--------TTTTEEEEEEESCGGGS
T ss_pred HH-----------------HhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc--------CCCCeEEEEEecCcccc
Confidence 11 0000 01246799999996542 22222211111 223456666665432 2
Q ss_pred hhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHH
Q 004895 310 LCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVAL 365 (724)
Q Consensus 310 ~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai 365 (724)
...-......+.+.+++.++..+.+.+.+...... --++..+.|++.++|.+--+
T Consensus 154 ~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~-i~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 154 TPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLK-LSPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCC-BCHHHHHHHHHHHTTCHHHH
T ss_pred chhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHH
Confidence 11112334578999999999999888876322111 11456788999999988643
No 179
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.34 E-value=3.4e-06 Score=89.84 Aligned_cols=178 Identities=11% Similarity=0.142 Sum_probs=116.9
Q ss_pred ccCceEEeccCCCcccCCCcc-cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCcc-ccCCCCCcEE
Q 004895 526 QKGPIAISLPYRDIQELPERL-ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSS-LGRLINLQTL 603 (724)
Q Consensus 526 ~~~~~~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~-i~~l~~L~~L 603 (724)
..+++.+.+..|.+..++... .+.+|+++.+. .....+....|.++++|+.+++..+ +..++.. +.+ .+|+.+
T Consensus 179 c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp---~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 179 CYNLKKADLSKTKITKLPASTFVYAGIEEVLLP---VTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTV 253 (401)
T ss_dssp CTTCCEEECTTSCCSEECTTTTTTCCCSEEECC---TTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEE
T ss_pred cccCCeeecCCCcceEechhhEeecccCEEEeC---CchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEE
Confidence 456778888777777765432 56788888772 2355677777888888888888764 4555443 333 677888
Q ss_pred EcCCcccCC--cccccCCCCCcEEEccCCcCc-----ccch-hhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEc
Q 004895 604 CLDGWRLED--IAIVGQLKKLEILSLRGAEIK-----QLPL-QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYM 675 (724)
Q Consensus 604 ~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~-----~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l 675 (724)
.+.. .++. ...|.++.+|+.+++.++.+. .++. .+..+++|+.+.+.. .+..++...+..|++|+.+.+
T Consensus 254 ~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 254 KLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp EEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred EeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence 7743 3444 256778888888888776554 4543 477788888888874 467777777788888888887
Q ss_pred cCCCCccccccCCccchHHhhcCCCCCcEEEeeccccccccccccc
Q 004895 676 GDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRDAEMLRRIWSL 721 (724)
Q Consensus 676 ~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~~~~lp~~~~~ 721 (724)
..+ +... .-..+.++ +|+.+.+..|....++...|.
T Consensus 331 p~~------l~~I---~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~ 366 (401)
T 4fdw_A 331 PAN------VTQI---NFSAFNNT-GIKEVKVEGTTPPQVFEKVWY 366 (401)
T ss_dssp CTT------CCEE---CTTSSSSS-CCCEEEECCSSCCBCCCSSCC
T ss_pred Ccc------ccEE---cHHhCCCC-CCCEEEEcCCCCccccccccc
Confidence 553 1111 11234556 778888877776666555443
No 180
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.33 E-value=5.4e-06 Score=86.40 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=105.3
Q ss_pred CcccccccchHHHHHHHHHHhc-----CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALK-----DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQG 230 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~-----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 230 (724)
+.....++|++..++.+..++. ......+.|+|++|+|||++|+.+++.... ..+.++.+......++
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~-----~~~~~~~~~~~~~~~~-- 97 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA-----NIKTTAAPMIEKSGDL-- 97 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC-----CEEEEEGGGCCSHHHH--
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEecchhccchhHH--
Confidence 3456778999999998888875 234457899999999999999999876532 1233433322211111
Q ss_pred HHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCc----------CCCCCCCCCc
Q 004895 231 ELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDE----------KDKNDDPRRC 298 (724)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~----------~~~~~~~~~s 298 (724)
...... ..+..+|+||++.... ....+...+..... .......++.
T Consensus 98 --------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (338)
T 3pfi_A 98 --------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKF 155 (338)
T ss_dssp --------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCC
T ss_pred --------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCe
Confidence 111111 1356789999987642 11111111000000 0000011235
Q ss_pred EEEEEecccchh--hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHHH
Q 004895 299 TIILTSRSRDLL--CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTVA 369 (724)
Q Consensus 299 ~ilvTtR~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~~ 369 (724)
.+|.+|...... .........+.+.+++.++...++.+.+...... --.+..+.|++.+.|.|-.+..+.
T Consensus 156 ~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 156 TLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT-CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE-ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred EEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 566666553321 1111223689999999999999999887532211 124677889999999996554433
No 181
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.32 E-value=9.1e-06 Score=85.73 Aligned_cols=196 Identities=10% Similarity=0.090 Sum_probs=102.5
Q ss_pred cccccchHHHHHH---HHHHhcCCCc--cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec----CCChHHHH
Q 004895 159 YNIFNSRKKIFQD---VIEALKDDKL--NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK----NPDAQKIQ 229 (724)
Q Consensus 159 ~~~~~gR~~~~~~---l~~~L~~~~~--~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~----~~~~~~l~ 229 (724)
...|+|++..+.. +.+.+..+.. +.+.|+|++|+|||++|+.+++....... .+.+.... .....+.+
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~ 119 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTP---FTAIAGSEIFSLEMSKTEAL 119 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCC---EEEEEGGGGSCSSSCHHHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCC---cccccchhhhhcccchhHHH
Confidence 5678999988666 4444444433 58999999999999999999998753211 22222221 22333333
Q ss_pred HHHHHh-hCCC---------------------------CCC-----CchhHHHHHHHHHH-HhcCC----cEEEEEcccc
Q 004895 230 GELASD-LGMN---------------------------FDS-----NDLIYHRAKQLCQR-LKKEK----RVLIILDNIW 271 (724)
Q Consensus 230 ~~i~~~-l~~~---------------------------~~~-----~~~~~~~~~~l~~~-l~~~k----r~LlVlDdv~ 271 (724)
...... ++.. ... .............. ...++ +.+|+||++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~ 199 (368)
T 3uk6_A 120 TQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVH 199 (368)
T ss_dssp HHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGG
T ss_pred HHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhcc
Confidence 333322 1100 000 00011111111111 11233 3599999997
Q ss_pred ccc--cccccccccCCCCcCCCCCCCCCcEEEEEecc-------------cchhhhhcCCCceEecCCCCHHHHHHHHHH
Q 004895 272 TKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRS-------------RDLLCIDMNSQKMFWIDALSEEEALQLFEK 336 (724)
Q Consensus 272 ~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-------------~~v~~~~~~~~~~~~l~~L~~~e~~~Lf~~ 336 (724)
... ..+.+...+.. .... .++++|.. ..+..........+.+++++.++..+++.+
T Consensus 200 ~l~~~~~~~L~~~le~--------~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 200 MLDIESFSFLNRALES--------DMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp GSBHHHHHHHHHHTTC--------TTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHH
T ss_pred ccChHHHHHHHHHhhC--------cCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHH
Confidence 652 12222222211 1112 34444431 111111122334689999999999999998
Q ss_pred HhCCCCCCCCchhHHHHHHHHhC-CchhHHHH
Q 004895 337 IVGESTKASDFRPLAEEIVGKCG-GLPVALST 367 (724)
Q Consensus 337 ~~~~~~~~~~l~~~~~~I~~~c~-GlPLai~~ 367 (724)
.+...... --.+....|++.+. |.|..+..
T Consensus 271 ~~~~~~~~-~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 271 RCEEEDVE-MSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHTTCC-BCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCC-CCHHHHHHHHHHhcCCCHHHHHH
Confidence 87532211 12467788999987 77765543
No 182
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.30 E-value=2.4e-06 Score=87.82 Aligned_cols=154 Identities=13% Similarity=0.154 Sum_probs=86.2
Q ss_pred cccchHHHHHHHHHHhc---------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 161 IFNSRKKIFQDVIEALK---------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~---------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
.++|.+..++.+.+.+. ......+.|+|++|+|||++|+.+++...........-++.++.
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~---- 107 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR---- 107 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG----
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH----
Confidence 46788887777765543 23345789999999999999999999876533222222333321
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc-----------ccccccccccCCCCcCCCCCC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK-----------LELDKIGIPYGDVDEKDKNDD 294 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~~~~~~~ 294 (724)
.+ +....... .......+... .+..+|+||+++.. .....+...+.. .
T Consensus 108 ~~--------l~~~~~g~--~~~~~~~~~~~---~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~--------~ 166 (309)
T 3syl_A 108 DD--------LVGQYIGH--TAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN--------N 166 (309)
T ss_dssp GG--------TCCSSTTC--HHHHHHHHHHH---HTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH--------C
T ss_pred HH--------hhhhcccc--cHHHHHHHHHh---cCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc--------C
Confidence 11 11111111 11112222222 23469999999743 111222222222 3
Q ss_pred CCCcEEEEEecccchh-------hhhcCCCceEecCCCCHHHHHHHHHHHhC
Q 004895 295 PRRCTIILTSRSRDLL-------CIDMNSQKMFWIDALSEEEALQLFEKIVG 339 (724)
Q Consensus 295 ~~~s~ilvTtR~~~v~-------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 339 (724)
..+..||+||...... .........+.+++++.++..+++.+.+.
T Consensus 167 ~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 167 RDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp TTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 3456777777543210 01011226889999999999999988764
No 183
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.30 E-value=3.3e-06 Score=87.47 Aligned_cols=178 Identities=12% Similarity=0.078 Sum_probs=102.9
Q ss_pred CcccccccchHHHHHHHHHHhcCCCc-cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKL-NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~-~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
|.....++|+++.++.+..++..+.. .++.+.|++|+|||++|+.+++.... .++.++.+.. ....+ +..+.
T Consensus 22 P~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~-----~~~~i~~~~~-~~~~i-~~~~~ 94 (324)
T 3u61_B 22 PSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA-----DMMFVNGSDC-KIDFV-RGPLT 94 (324)
T ss_dssp CCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTE-----EEEEEETTTC-CHHHH-HTHHH
T ss_pred CCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCC-----CEEEEccccc-CHHHH-HHHHH
Confidence 44567789999999999999875543 57788888999999999999887632 2445554332 22221 11111
Q ss_pred hhCCCCCCCchhHHHHHHHHHHH-hcCCcEEEEEccccccc---cccccccccCCCCcCCCCCCCCCcEEEEEecccchh
Q 004895 235 DLGMNFDSNDLIYHRAKQLCQRL-KKEKRVLIILDNIWTKL---ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL 310 (724)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~l~~~l-~~~kr~LlVlDdv~~~~---~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 310 (724)
.. .... ..+++.++++||+.... ..+.+...+.. ...++.+|+||....-.
T Consensus 95 ~~-----------------~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~--------~~~~~~iI~~~n~~~~l 149 (324)
T 3u61_B 95 NF-----------------ASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA--------YSSNCSIIITANNIDGI 149 (324)
T ss_dssp HH-----------------HHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH--------HGGGCEEEEEESSGGGS
T ss_pred HH-----------------HhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh--------CCCCcEEEEEeCCcccc
Confidence 11 0000 01367899999997653 22222221111 12356777777664321
Q ss_pred -hhhcCCCceEecCCCCHHHHHHHHHH-------HhCCCCCCCCch-hHHHHHHHHhCCchhHHH
Q 004895 311 -CIDMNSQKMFWIDALSEEEALQLFEK-------IVGESTKASDFR-PLAEEIVGKCGGLPVALS 366 (724)
Q Consensus 311 -~~~~~~~~~~~l~~L~~~e~~~Lf~~-------~~~~~~~~~~l~-~~~~~I~~~c~GlPLai~ 366 (724)
..-......+.+++++.++-.+++.. .+......- -+ +....|++.++|.+..+.
T Consensus 150 ~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~-~~~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 150 IKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAI-ADMKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp CTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCB-SCHHHHHHHHHHTCSCTTHHH
T ss_pred CHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHhCCCCHHHHH
Confidence 11111235789999998885444332 222111111 13 678889999988876543
No 184
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.29 E-value=3.7e-05 Score=81.63 Aligned_cols=187 Identities=14% Similarity=0.123 Sum_probs=104.7
Q ss_pred CcccccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC
Q 004895 156 MKDYNIFNSRKKIFQDVIEALK------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP 223 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (724)
+.....++|.+..++.|.+.+. ....+-+.|+|++|+|||+||+.+++.... ..+.++++.-.
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-----~~~~v~~~~l~ 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-----TFFNISAASLT 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEECSCCC-
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC-----cEEEeeHHHhh
Confidence 4456778999999999988773 123468899999999999999999876532 13344433221
Q ss_pred ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccCCCCcCC
Q 004895 224 DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-------------LDKIGIPYGDVDEKD 290 (724)
Q Consensus 224 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~ 290 (724)
+ .. ... .......+........+.+|+||+++.... ...+...+...
T Consensus 186 ~--~~------------~g~--~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~---- 245 (389)
T 3vfd_A 186 S--KY------------VGE--GEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGV---- 245 (389)
T ss_dssp ----------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHH----
T ss_pred c--cc------------cch--HHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcc----
Confidence 1 00 000 112233344444445668999999965410 00110000000
Q ss_pred CCCCCCCcEEEEEecccchh-h-hhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh-HHHH
Q 004895 291 KNDDPRRCTIILTSRSRDLL-C-IDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV-ALST 367 (724)
Q Consensus 291 ~~~~~~~s~ilvTtR~~~v~-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~ 367 (724)
.........||.||...... . ........+.+...+.++-.+++...+...... -..+....|++.+.|..- +|..
T Consensus 246 ~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~-l~~~~~~~la~~~~g~~~~~l~~ 324 (389)
T 3vfd_A 246 QSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSP-LTQKELAQLARMTDGYSGSDLTA 324 (389)
T ss_dssp C-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCC-SCHHHHHHHHHHTTTCCHHHHHH
T ss_pred cccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHH
Confidence 00012334566666543321 1 111222468889999999999999887543221 124567889999988654 5544
Q ss_pred H
Q 004895 368 V 368 (724)
Q Consensus 368 ~ 368 (724)
+
T Consensus 325 L 325 (389)
T 3vfd_A 325 L 325 (389)
T ss_dssp H
T ss_pred H
Confidence 4
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.28 E-value=6.2e-06 Score=88.88 Aligned_cols=185 Identities=12% Similarity=0.163 Sum_probs=104.6
Q ss_pred ccccc-chH--HHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 159 YNIFN-SRK--KIFQDVIEALKDDK-LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 159 ~~~~~-gR~--~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
...|+ |.. .....+........ ...+.|+|++|+||||||+.+++.......-..+++++.+ ++..++..
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~------~~~~~~~~ 177 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE------KFLNDLVD 177 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH------HHHHHHHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH------HHHHHHHH
Confidence 44555 532 23334444433332 6678999999999999999999987543111235566543 23344444
Q ss_pred hhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc----ccccccccCCCCcCCCCCCCCCcEEEEEecccchh
Q 004895 235 DLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE----LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL 310 (724)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 310 (724)
.+... ....+...+. .+..+|+|||++.... .+.+...+... ...|..||+||....-.
T Consensus 178 ~~~~~---------~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l-------~~~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 178 SMKEG---------KLNEFREKYR-KKVDILLIDDVQFLIGKTGVQTELFHTFNEL-------HDSGKQIVICSDREPQK 240 (440)
T ss_dssp HHHTT---------CHHHHHHHHT-TTCSEEEEECGGGGSSCHHHHHHHHHHHHHH-------HTTTCEEEEEESSCGGG
T ss_pred HHHcc---------cHHHHHHHhc-CCCCEEEEeCcccccCChHHHHHHHHHHHHH-------HHCCCeEEEEECCCHHH
Confidence 33211 0112233332 2567999999976532 12221111100 12466788888764210
Q ss_pred --------hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHH
Q 004895 311 --------CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALST 367 (724)
Q Consensus 311 --------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~ 367 (724)
.........+.+++++.++..+++.+.+...... --++....|++.++|.+-.+.-
T Consensus 241 l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~-i~~e~l~~la~~~~gn~R~l~~ 304 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGE-LPEEVLNFVAENVDDNLRRLRG 304 (440)
T ss_dssp CSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCC-CCTTHHHHHHHHCCSCHHHHHH
T ss_pred HHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCCCHHHHHH
Confidence 1112223578899999999999999887421111 1135678899999998865543
No 186
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.26 E-value=5.3e-05 Score=77.18 Aligned_cols=187 Identities=12% Similarity=0.115 Sum_probs=103.5
Q ss_pred cccccccchHHHHHHHHHHhcC------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 157 KDYNIFNSRKKIFQDVIEALKD------------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
.....++|.+..++.+.+.+.. ...+.+.|+|++|+||||+|+.+++.... ..+.++++.-..
T Consensus 18 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~-----~~~~i~~~~l~~ 92 (297)
T 3b9p_A 18 VEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA-----TFLNISAASLTS 92 (297)
T ss_dssp CCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC-----EEEEEESTTTSS
T ss_pred CCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC-----CeEEeeHHHHhh
Confidence 3456788999999888877631 23568899999999999999999986632 123344332111
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccccc-------------ccccccCCCCcCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELD-------------KIGIPYGDVDEKDK 291 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~-------------~l~~~~~~~~~~~~ 291 (724)
..... .......+.......++.+|+||++.....-. .+...+.. ...
T Consensus 93 --------------~~~~~--~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~---~~~ 153 (297)
T 3b9p_A 93 --------------KYVGD--GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDG---LPG 153 (297)
T ss_dssp --------------SSCSC--HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHH---CC-
T ss_pred --------------cccch--HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhc---ccc
Confidence 11111 12233334444444577999999996542100 01000000 000
Q ss_pred CCCCCCcEEEEEecccchh-h-hhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh-HHHHH
Q 004895 292 NDDPRRCTIILTSRSRDLL-C-IDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV-ALSTV 368 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~~~v~-~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL-ai~~~ 368 (724)
.....+..||.||...... . ........+.++..+.++-..++...+...... --.+....|++.+.|.+- ++..+
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSP-LDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCC-SCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHcCCCCHHHHHHH
Confidence 0012345566677654321 1 101222467777888888888888776432211 114567789999998875 44443
No 187
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.25 E-value=2.9e-05 Score=81.15 Aligned_cols=185 Identities=15% Similarity=0.154 Sum_probs=104.6
Q ss_pred ccccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 158 DYNIFNSRKKIFQDVIEALK------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
....++|.+..++.|.+.+. ....+-|.|+|++|+|||+||+.+++..... .+.++.+
T Consensus 49 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~-----~~~v~~~----- 118 (355)
T 2qp9_X 49 KWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS----- 118 (355)
T ss_dssp CGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEEEHH-----
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC-----EEEeeHH-----
Confidence 35567898888888887762 1123458899999999999999999987421 2333322
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccCCCCcCCCC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-------------LDKIGIPYGDVDEKDKN 292 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~~ 292 (724)
++ .... ... .......+.......++.+|+||+++.... ...+...+..+ .
T Consensus 119 -~l----~~~~----~g~--~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~-----~ 182 (355)
T 2qp9_X 119 -DL----VSKW----MGE--SEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV-----G 182 (355)
T ss_dssp -HH----HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHC-----C
T ss_pred -HH----hhhh----cch--HHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcc-----c
Confidence 11 1111 011 122334444444445789999999975421 11111111000 0
Q ss_pred CCCCCcEEEEEecccchh--hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCc-hhHHHHHH
Q 004895 293 DDPRRCTIILTSRSRDLL--CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGL-PVALSTVA 369 (724)
Q Consensus 293 ~~~~~s~ilvTtR~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~~ 369 (724)
....+..||.||...... .........+.+...+.++-.+++...+......- -......|++.+.|. |-.|..+.
T Consensus 183 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~-~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 183 NDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVL-TKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp ---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCC-CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 012345566666554321 11113335778889999999999998875432111 144678899999884 44454443
No 188
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.24 E-value=8.8e-07 Score=81.49 Aligned_cols=82 Identities=16% Similarity=0.215 Sum_probs=40.1
Q ss_pred CceEEEcCCCcCCC-CCccccCCCCCcEEEcCCcc-cCC--cccccCC----CCCcEEEccCC-cCccc-chhhhcCCCC
Q 004895 576 ELKVLDFTGIRFSP-LPSSLGRLINLQTLCLDGWR-LED--IAIVGQL----KKLEILSLRGA-EIKQL-PLQIGQLTRL 645 (724)
Q Consensus 576 ~L~~L~l~~~~~~~-lp~~i~~l~~L~~L~L~~~~-l~~--~~~~~~l----~~L~~L~l~~~-~i~~l-p~~i~~l~~L 645 (724)
.|+.||+++|.++. -...+..+++|++|+|++|. +++ +..++.+ ++|++|++++| .|+.- -..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46666666666552 12334555666666666653 444 3444433 24555555555 34411 1223445555
Q ss_pred CeEccCCCCCCc
Q 004895 646 QLLDLSNCSSLV 657 (724)
Q Consensus 646 ~~L~l~~~~~l~ 657 (724)
++|++++|..++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 555555554433
No 189
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=1.6e-05 Score=82.82 Aligned_cols=180 Identities=12% Similarity=0.138 Sum_probs=105.8
Q ss_pred cccccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC
Q 004895 157 KDYNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP 223 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (724)
.....+.|-++.+++|.+.+. -...+-|.++|++|+|||.||+.+++..... .+.++.+.-.
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l~ 219 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCK-----FIRVSGAELV 219 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE-----EEEEEGGGGS
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC-----ceEEEhHHhh
Confidence 445667788887777766543 1234678899999999999999999987542 3344433221
Q ss_pred ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccc------------c-ccccccCCCCcCC
Q 004895 224 DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLEL------------D-KIGIPYGDVDEKD 290 (724)
Q Consensus 224 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~------------~-~l~~~~~~~~~~~ 290 (724)
+ ...++ .......++.......+++|++|+++....- . .+...+ ...+
T Consensus 220 s--------------k~vGe--se~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL---~~lD 280 (405)
T 4b4t_J 220 Q--------------KYIGE--GSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELL---NQLD 280 (405)
T ss_dssp C--------------SSTTH--HHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHH---HHHH
T ss_pred c--------------cccch--HHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHH---Hhhh
Confidence 1 11111 2334455555555567899999999754110 0 000000 0011
Q ss_pred CCCCCCCcEEEEEecccchhh---h-hcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 291 KNDDPRRCTIILTSRSRDLLC---I-DMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 291 ~~~~~~~s~ilvTtR~~~v~~---~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
......+..||.||....... . .......+.++.-+.++-.++|+.+.......++. ....|++.+.|+-
T Consensus 281 g~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv--dl~~lA~~t~G~S 354 (405)
T 4b4t_J 281 GFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI--NLRKVAEKMNGCS 354 (405)
T ss_dssp TTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC--CHHHHHHHCCSCC
T ss_pred ccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC--CHHHHHHHCCCCC
Confidence 122445566777777665421 1 12344688888888888889998877543222221 1467888888754
No 190
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.22 E-value=2.8e-05 Score=80.63 Aligned_cols=171 Identities=11% Similarity=0.142 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHhcCCC-ccEEEEEcCCCCcHHHHHHHHHHHHhhcc--------------------CCCeEEEEEEe---
Q 004895 165 RKKIFQDVIEALKDDK-LNIIGVCGMGGVGKTTLVKQIAKQVMEDN--------------------VFDKVVMAEIT--- 220 (724)
Q Consensus 165 R~~~~~~l~~~L~~~~-~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------~F~~~~wv~vs--- 220 (724)
.++..+.+...+..++ ...+.++|+.|+|||++|+.+++...... |+| ..++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~~~~~ 85 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAPEKGK 85 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECCCTTC
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEeccccC
Confidence 3555667777776655 45789999999999999999999864321 122 2233221
Q ss_pred cCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCc
Q 004895 221 KNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRC 298 (724)
Q Consensus 221 ~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s 298 (724)
....+++ .+++.+.+.... ..+++-++|+|+++... ..+.+...+.. ...++
T Consensus 86 ~~~~i~~-ir~l~~~~~~~~-----------------~~~~~kvviIdead~l~~~a~naLLk~lEe--------p~~~~ 139 (334)
T 1a5t_A 86 NTLGVDA-VREVTEKLNEHA-----------------RLGGAKVVWVTDAALLTDAAANALLKTLEE--------PPAET 139 (334)
T ss_dssp SSBCHHH-HHHHHHHTTSCC-----------------TTSSCEEEEESCGGGBCHHHHHHHHHHHTS--------CCTTE
T ss_pred CCCCHHH-HHHHHHHHhhcc-----------------ccCCcEEEEECchhhcCHHHHHHHHHHhcC--------CCCCe
Confidence 1112221 122222221110 02467899999997653 22333222222 33456
Q ss_pred EEEEEecccc-hhhhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 299 TIILTSRSRD-LLCIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 299 ~ilvTtR~~~-v~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
.+|++|.... +...-.+....+.+.++++++..+.+.+... --++.+..+++.++|.|..+..+
T Consensus 140 ~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~~------~~~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 140 WFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREVT------MSQDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHCC------CCHHHHHHHHHHTTTCHHHHHHT
T ss_pred EEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhcC------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 6666666543 3222234456899999999999999988751 11456688999999999766443
No 191
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.21 E-value=4.4e-05 Score=82.32 Aligned_cols=187 Identities=17% Similarity=0.177 Sum_probs=104.0
Q ss_pred cccccccchHHHHHHHHHHhc------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 157 KDYNIFNSRKKIFQDVIEALK------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
.....++|.+..++.|.+.+. ....+-+.|+|++|+|||+||+.+++.... .-++.++..
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~------~~~~~v~~~-- 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------STFFSISSS-- 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS------SEEEEECCC--
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC------CCEEEEeHH--
Confidence 345668899988888887662 123467899999999999999999987621 123333322
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc---------c----cccccccCCCCcCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE---------L----DKIGIPYGDVDEKDK 291 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---------~----~~l~~~~~~~~~~~~ 291 (724)
++.... .+.. . .....+.......++.+|+||++..... . ..+...+.. .
T Consensus 203 --~l~~~~---~g~~---~----~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~---~-- 265 (444)
T 2zan_A 203 --DLVSKW---LGES---E----KLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG---V-- 265 (444)
T ss_dssp --------------C---C----CTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC---S--
T ss_pred --HHHhhh---cchH---H----HHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC---c--
Confidence 111111 1110 1 1223344444445789999999975411 0 111111110 0
Q ss_pred CCCCCCcEEEEEecccchh--hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCc-hhHHHHH
Q 004895 292 NDDPRRCTIILTSRSRDLL--CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGL-PVALSTV 368 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~~~v~--~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~~ 368 (724)
.....+..||.||...... .........+.++..+.++-..+|...+....... -......|++.+.|+ +-.|..+
T Consensus 266 ~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 266 GVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL-TEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC-CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC-CHHHHHHHHHHcCCCCHHHHHHH
Confidence 0023456677677654322 11112234777888888888899988875332111 135677899999884 4444444
Q ss_pred H
Q 004895 369 A 369 (724)
Q Consensus 369 ~ 369 (724)
.
T Consensus 345 ~ 345 (444)
T 2zan_A 345 V 345 (444)
T ss_dssp H
T ss_pred H
Confidence 3
No 192
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.21 E-value=8.9e-06 Score=86.62 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=86.0
Q ss_pred CceEEeccCCCcccCCCcc-cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcC
Q 004895 528 GPIAISLPYRDIQELPERL-ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLD 606 (724)
Q Consensus 528 ~~~~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~ 606 (724)
+++.+.+..+ +..++... ...+|+++.+. .....+....|.++.+|+.+++++|.+..+|.......+|+.+.|.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp---~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFP---STLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCCCCEEECC---TTCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CccEEEeCCC-ccEECHHhcCCCCceEEEeC---CCccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 4555555433 44443221 22357777762 1445566677888888888888888888777655556778888886
Q ss_pred CcccCC--cccccCCCCCcEEEccCCcCcccchhhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 607 GWRLED--IAIVGQLKKLEILSLRGAEIKQLPLQIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 607 ~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
.+ ++. ...+.++.+|+.+++..+ ++.++.....-.+|+.+.+.. .+..++...+..+++|+.+.+.++
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESS
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCc
Confidence 44 444 245677777777777653 455544322225566666643 345555555666666666665543
No 193
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.16 E-value=5.1e-06 Score=78.05 Aligned_cols=50 Identities=24% Similarity=0.306 Sum_probs=43.4
Q ss_pred ccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 158 DYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
....++||+++++.+.+.+.....+.+.|+|++|+|||++|+.+++....
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 34568899999999999988766778899999999999999999998743
No 194
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.16 E-value=1.4e-05 Score=86.94 Aligned_cols=152 Identities=18% Similarity=0.249 Sum_probs=87.2
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCC----Ce-EEEEEEecCCChHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVF----DK-VVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~-~~wv~vs~~~~~~~l~~~ 231 (724)
.....++||++++..+++.+......-+.|+|++|+|||++|+.+++........ +. ++.++++.
T Consensus 177 ~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~---------- 246 (468)
T 3pxg_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT---------- 246 (468)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCCc----------
Confidence 3456789999999999999876555667899999999999999999987432111 11 22333320
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccch--
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL-- 309 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-- 309 (724)
. .... .......+...+...++.+|++| ...+..+.+...+ .....++|.+|.....
T Consensus 247 ---~----~~g~--~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L----------~~g~v~vI~at~~~e~~~ 305 (468)
T 3pxg_A 247 ---K----YRGE--FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSL----------ARGELQCIGATTLDEYRK 305 (468)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCT----------TSSSCEEEEECCTTTTHH
T ss_pred ---c----ccch--HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhh----------cCCCEEEEecCCHHHHHH
Confidence 0 0000 01122344444444567899999 1112212222222 2234556666655431
Q ss_pred ----hhhhcCCCceEecCCCCHHHHHHHHHHHhC
Q 004895 310 ----LCIDMNSQKMFWIDALSEEEALQLFEKIVG 339 (724)
Q Consensus 310 ----~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 339 (724)
..........+.+++.+.++..+++...+.
T Consensus 306 ~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 111122334799999999999999998764
No 195
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.15 E-value=6.9e-05 Score=76.41 Aligned_cols=178 Identities=13% Similarity=0.206 Sum_probs=101.0
Q ss_pred ccccccchHHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 158 DYNIFNSRKKIFQDVIEALKD-------------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
....++|.+..++.|.+++.. ...+.+.|+|++|+|||+||+.+++.... ..+.++
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~-----~~i~v~------ 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIK------ 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----EEEEEC------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC-----CEEEEE------
Confidence 345678888887777766531 34567899999999999999999987632 122232
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc----------------ccccccccCCCCc
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE----------------LDKIGIPYGDVDE 288 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~~ 288 (724)
..++.... .+.. ......+........+.+|+||++..... ...+...+..
T Consensus 82 ~~~l~~~~---~g~~-------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~--- 148 (301)
T 3cf0_A 82 GPELLTMW---FGES-------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG--- 148 (301)
T ss_dssp HHHHHHHH---HTTC-------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS---
T ss_pred hHHHHhhh---cCch-------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc---
Confidence 22333222 1211 11233344444445679999999964310 0111111100
Q ss_pred CCCCCCCCCcEEEEEecccchh-hhhc---CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhH
Q 004895 289 KDKNDDPRRCTIILTSRSRDLL-CIDM---NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVA 364 (724)
Q Consensus 289 ~~~~~~~~~s~ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 364 (724)
.....+..||.||...... .... .....+.++..+.++-.+++...+.......+. ....+++.+.|.|-+
T Consensus 149 ---~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~--~~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 149 ---MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDV--DLEFLAKMTNGFSGA 223 (301)
T ss_dssp ---SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSC--CHHHHHHTCSSCCHH
T ss_pred ---ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccc--hHHHHHHHcCCCCHH
Confidence 0123456677777655322 1111 223578899999999999998887533222211 134667777777644
No 196
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.11 E-value=4.1e-05 Score=81.13 Aligned_cols=181 Identities=14% Similarity=0.121 Sum_probs=102.9
Q ss_pred CcccccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC
Q 004895 156 MKDYNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN 222 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (724)
......+.|-++.++.|.+.+. -...+-|.++|++|+|||.||+.+++..... .+.++.+.-
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~-----f~~v~~s~l 251 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNAT-----FLKLAAPQL 251 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGG
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC-----EEEEehhhh
Confidence 3445667788888888776643 1245688999999999999999999987542 334443321
Q ss_pred CChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc------------cc-ccccccCCCCcC
Q 004895 223 PDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE------------LD-KIGIPYGDVDEK 289 (724)
Q Consensus 223 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------------~~-~l~~~~~~~~~~ 289 (724)
. ....+. .......++.......+++|++|+++.... .. .+...+ ...
T Consensus 252 ~--------------~~~vGe--se~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL---~~l 312 (434)
T 4b4t_M 252 V--------------QMYIGE--GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELL---NQL 312 (434)
T ss_dssp C--------------SSCSSH--HHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHH---HHH
T ss_pred h--------------hcccch--HHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHH---HHh
Confidence 1 111111 223344444444445789999999864310 00 000000 011
Q ss_pred CCCCCCCCcEEEEEecccchhhhhc----CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 290 DKNDDPRRCTIILTSRSRDLLCIDM----NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 290 ~~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
+......+..||.||........+. .....+.++.-+.++-.++|+.+.......++.. ...|++.+.|+-
T Consensus 313 dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvd--l~~lA~~t~G~s 387 (434)
T 4b4t_M 313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDIN--WQELARSTDEFN 387 (434)
T ss_dssp TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCC--HHHHHHHCSSCC
T ss_pred hccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCC--HHHHHHhCCCCC
Confidence 1112334556777777665431111 2234678888888888888887764322222211 467788887753
No 197
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=8.7e-05 Score=78.69 Aligned_cols=179 Identities=16% Similarity=0.206 Sum_probs=102.6
Q ss_pred ccccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 158 DYNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
....+.|-++.++.|.+.+. -...+-|.++|++|+|||+||+.+++..... .+.++.+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~-----~~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN-----FIFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEehhhhcc
Confidence 34566788877777766543 1245788999999999999999999987542 33444443211
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--------cc-----ccccccCCCCcCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--------LD-----KIGIPYGDVDEKDK 291 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--------~~-----~l~~~~~~~~~~~~ 291 (724)
..... .......++.......+++|++|+++.... .+ .+...+. ..+.
T Consensus 254 --------------k~~Ge--se~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~---~lDg 314 (437)
T 4b4t_L 254 --------------KYIGE--SARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLT---QMDG 314 (437)
T ss_dssp --------------SSSSH--HHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHH---HHHS
T ss_pred --------------ccchH--HHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHH---Hhhc
Confidence 11111 223344455555556889999999975311 00 0000000 0111
Q ss_pred CCCCCCcEEEEEecccchhhhh-cC---CCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 292 NDDPRRCTIILTSRSRDLLCID-MN---SQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~~~v~~~~-~~---~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
.....+..||.||........+ .. -...+.++.-+.++-.++|+.+.......++.. ...|++.+.|+-
T Consensus 315 ~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~d--l~~lA~~t~G~s 387 (437)
T 4b4t_L 315 FDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFD--FEAAVKMSDGFN 387 (437)
T ss_dssp SSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCC--HHHHHHTCCSCC
T ss_pred ccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccC--HHHHHHhCCCCC
Confidence 1234456778787765532111 11 234677877788888888887765332222211 467788887754
No 198
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=3.8e-05 Score=81.17 Aligned_cols=178 Identities=14% Similarity=0.106 Sum_probs=102.9
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 159 YNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
...+.|-++.+++|.+.+. -...+-|.++|++|+|||+||+.+++..... .+.++.+.-.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~-----fi~vs~s~L~-- 280 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDAT-----FIRVIGSELV-- 280 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE-----EEEEEGGGGC--
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC-----eEEEEhHHhh--
Confidence 3456788888777766542 1346788999999999999999999987542 3344433211
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccccc-------------ccccccCCCCcCCCC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELD-------------KIGIPYGDVDEKDKN 292 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~-------------~l~~~~~~~~~~~~~ 292 (724)
.....+ .......++.......+++|++|+++....-. .+...+ ...+..
T Consensus 281 ------------sk~vGe--sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL---~~lDg~ 343 (467)
T 4b4t_H 281 ------------QKYVGE--GARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELI---TQLDGF 343 (467)
T ss_dssp ------------CCSSSH--HHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHH---HHHHSS
T ss_pred ------------cccCCH--HHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHH---HHhhcc
Confidence 111111 22344455555555678999999996541100 000000 001111
Q ss_pred CCCCCcEEEEEecccchh---hh-hcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 293 DDPRRCTIILTSRSRDLL---CI-DMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 293 ~~~~~s~ilvTtR~~~v~---~~-~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
....+..||.||...... .. .......+.++.-+.++-.++|+.++.......+.. ...|++.|.|+-
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd--l~~LA~~T~GfS 415 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR--WELISRLCPNST 415 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC--HHHHHHHCCSCC
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC--HHHHHHHCCCCC
Confidence 234455667777655432 11 113346788888888888889988775433222221 467888888754
No 199
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.09 E-value=3.6e-05 Score=79.57 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=93.5
Q ss_pred HHHHHHHhcCC--CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchh
Q 004895 169 FQDVIEALKDD--KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLI 246 (724)
Q Consensus 169 ~~~l~~~L~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~ 246 (724)
...+......+ ....+.|+|++|+||||||+.+++..... . ..+++++++ ++...+...+...
T Consensus 23 ~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~~------~~~~~~~~~~~~~------- 87 (324)
T 1l8q_A 23 YEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSAD------DFAQAMVEHLKKG------- 87 (324)
T ss_dssp HHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEHH------HHHHHHHHHHHHT-------
T ss_pred HHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEHH------HHHHHHHHHHHcC-------
Confidence 34444444433 34678899999999999999999987543 1 224566543 3333333332110
Q ss_pred HHHHHHHHHHHhcCCcEEEEEcccccccc---c-cccccccCCCCcCCCCCCCCCcEEEEEecccch-----h---hhhc
Q 004895 247 YHRAKQLCQRLKKEKRVLIILDNIWTKLE---L-DKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL-----L---CIDM 314 (724)
Q Consensus 247 ~~~~~~l~~~l~~~kr~LlVlDdv~~~~~---~-~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-----~---~~~~ 314 (724)
....+...+. +..+|++||+..... + +.+...+... ...+..||+||....- . ....
T Consensus 88 --~~~~~~~~~~--~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~-------~~~~~~iii~~~~~~~~l~~l~~~L~sR~ 156 (324)
T 1l8q_A 88 --TINEFRNMYK--SVDLLLLDDVQFLSGKERTQIEFFHIFNTL-------YLLEKQIILASDRHPQKLDGVSDRLVSRF 156 (324)
T ss_dssp --CHHHHHHHHH--TCSEEEEECGGGGTTCHHHHHHHHHHHHHH-------HHTTCEEEEEESSCGGGCTTSCHHHHHHH
T ss_pred --cHHHHHHHhc--CCCEEEEcCcccccCChHHHHHHHHHHHHH-------HHCCCeEEEEecCChHHHHHhhhHhhhcc
Confidence 1112223332 357999999976432 1 1221111100 1235568888764421 0 0111
Q ss_pred CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhH
Q 004895 315 NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVA 364 (724)
Q Consensus 315 ~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLa 364 (724)
.....+.+++ +.++..+++.+.+...... --++....|++.+ |.+-.
T Consensus 157 ~~~~~i~l~~-~~~e~~~il~~~~~~~~~~-l~~~~l~~l~~~~-g~~r~ 203 (324)
T 1l8q_A 157 EGGILVEIEL-DNKTRFKIIKEKLKEFNLE-LRKEVIDYLLENT-KNVRE 203 (324)
T ss_dssp HTSEEEECCC-CHHHHHHHHHHHHHHTTCC-CCHHHHHHHHHHC-SSHHH
T ss_pred cCceEEEeCC-CHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHhC-CCHHH
Confidence 2225689999 9999999999887522111 1146677888888 76643
No 200
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.04 E-value=0.00011 Score=76.88 Aligned_cols=180 Identities=13% Similarity=0.122 Sum_probs=102.0
Q ss_pred cccccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC
Q 004895 157 KDYNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP 223 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (724)
.....+.|-++.+++|.+.+. -...+-|.++|++|+|||.||+.+++..... .+.++.+.-
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~-----fi~v~~s~l- 252 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT-----FLRIVGSEL- 252 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE-----EEEEESGGG-
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCC-----EEEEEHHHh-
Confidence 445566788887777766543 1235779999999999999999999987642 233333321
Q ss_pred ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccccc-------------ccccccCCCCcCC
Q 004895 224 DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELD-------------KIGIPYGDVDEKD 290 (724)
Q Consensus 224 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~-------------~l~~~~~~~~~~~ 290 (724)
......+ .......++.......+++|++|+++....-. .+...+ ...+
T Consensus 253 -------------~sk~vGe--sek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL---~~lD 314 (437)
T 4b4t_I 253 -------------IQKYLGD--GPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELL---NQLD 314 (437)
T ss_dssp -------------CCSSSSH--HHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHH---HHHH
T ss_pred -------------hhccCch--HHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHH---HHhh
Confidence 1111111 23344455555555678999999997531100 000000 0001
Q ss_pred CCCCCCCcEEEEEecccchhhhhc----CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 291 KNDDPRRCTIILTSRSRDLLCIDM----NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 291 ~~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
......+..||.||-.......+. .....+.++.-+.++-.++|+.+.......++. ....|++.+.|+-
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv--dl~~LA~~T~GfS 388 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV--NLETLVTTKDDLS 388 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC--CHHHHHHHCCSCC
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC--CHHHHHHhCCCCC
Confidence 112344556777777665431111 122457777778888888998877533222221 1457778887754
No 201
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=0.00013 Score=77.21 Aligned_cols=180 Identities=15% Similarity=0.166 Sum_probs=98.6
Q ss_pred cccccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC
Q 004895 157 KDYNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP 223 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (724)
.....+.|-++.++.|.+.+. -...+-+.++|++|+|||+||+.+++..... .+.++.++-.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~-----~~~v~~~~l~ 243 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAA-----FIRVNGSEFV 243 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCE-----EEEEEGGGTC
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eEEEecchhh
Confidence 345567788888887776553 1245678999999999999999999987532 3444444321
Q ss_pred ChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--------cc----c-cccccCCCCcCC
Q 004895 224 DAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--------LD----K-IGIPYGDVDEKD 290 (724)
Q Consensus 224 ~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--------~~----~-l~~~~~~~~~~~ 290 (724)
+ ...+. ....+..++.......++++++|+++.... .+ . +...+. ..+
T Consensus 244 ~--------------~~~Ge--~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~---~ld 304 (428)
T 4b4t_K 244 H--------------KYLGE--GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLT---QMD 304 (428)
T ss_dssp C--------------SSCSH--HHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHH---HHH
T ss_pred c--------------cccch--hHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHH---Hhh
Confidence 1 11111 223344555555556789999999964310 00 0 000000 011
Q ss_pred CCCCCCCcEEEEEecccchh-hhhc---CCCceEecCCCCHHH-HHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 291 KNDDPRRCTIILTSRSRDLL-CIDM---NSQKMFWIDALSEEE-ALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 291 ~~~~~~~s~ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~e-~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
......+..||.||...... .... .....+.++.++..+ -..+|+.+.......++. ....|++.+.|+-
T Consensus 305 g~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~--dl~~lA~~t~G~s 379 (428)
T 4b4t_K 305 GFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA--DLDSLIIRNDSLS 379 (428)
T ss_dssp HSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC--CHHHHHHHTTTCC
T ss_pred CCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHHCCCCC
Confidence 11234456677777765532 1111 222467777675544 445666665432222221 1467788887754
No 202
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=3.8e-06 Score=77.20 Aligned_cols=82 Identities=13% Similarity=0.181 Sum_probs=62.4
Q ss_pred CCCcEEEcCCcccCC--cccccCCCCCcEEEccCC-cCccc-chhhhcC----CCCCeEccCCCCCCcccChHHhhCCCC
Q 004895 598 INLQTLCLDGWRLED--IAIVGQLKKLEILSLRGA-EIKQL-PLQIGQL----TRLQLLDLSNCSSLVVIAPNVISKLSR 669 (724)
Q Consensus 598 ~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~-~i~~l-p~~i~~l----~~L~~L~l~~~~~l~~~~~~~i~~l~~ 669 (724)
.+|++|++++|.+++ +..+..+++|++|+|++| .|+.- -..+..+ ++|++|++++|..++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468999999998876 577888999999999998 57631 2334443 369999999988776644445778899
Q ss_pred CcEEEccCCC
Q 004895 670 LEELYMGDSF 679 (724)
Q Consensus 670 L~~L~l~~~~ 679 (724)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999998874
No 203
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.94 E-value=6.7e-06 Score=77.39 Aligned_cols=109 Identities=16% Similarity=0.152 Sum_probs=65.7
Q ss_pred hhhcCCCCceEEEcCCC-cCC-----CCCccccCCCCCcEEEcCCcccCC--c----ccccCCCCCcEEEccCCcCcc--
Q 004895 569 HFFEGTEELKVLDFTGI-RFS-----PLPSSLGRLINLQTLCLDGWRLED--I----AIVGQLKKLEILSLRGAEIKQ-- 634 (724)
Q Consensus 569 ~~~~~l~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~i~~-- 634 (724)
..+...+.|+.|+|++| .+. .+...+....+|++|+|++|.+.. . ..+...++|++|+|++|.|..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 44666778888888887 765 234455666778888888887765 1 334455677777777777663
Q ss_pred ---cchhhhcCCCCCeEcc--CCCCCCcccC----hHHhhCCCCCcEEEccCC
Q 004895 635 ---LPLQIGQLTRLQLLDL--SNCSSLVVIA----PNVISKLSRLEELYMGDS 678 (724)
Q Consensus 635 ---lp~~i~~l~~L~~L~l--~~~~~l~~~~----~~~i~~l~~L~~L~l~~~ 678 (724)
+...+...++|++|++ ++| .+.... ...+...++|++|++++|
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 3445556666777777 442 332211 122344455666666554
No 204
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.92 E-value=4.7e-05 Score=89.34 Aligned_cols=179 Identities=15% Similarity=0.206 Sum_probs=96.5
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccC---C-C-eEEEEEEecCCChHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV---F-D-KVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~---F-~-~~~wv~vs~~~~~~~l~~~ 231 (724)
.....++||++++..+++.+......-+.++|++|+||||+|+.+++....... . + .+++++++.-..
T Consensus 167 ~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~------- 239 (854)
T 1qvr_A 167 GKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLA------- 239 (854)
T ss_dssp TCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC------------
T ss_pred CCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhc-------
Confidence 445678999999999999987665566789999999999999999998743211 1 1 234444322110
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhc-CCcEEEEEcccccccc-------ccc---cccccCCCCcCCCCCCCCCcEE
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKK-EKRVLIILDNIWTKLE-------LDK---IGIPYGDVDEKDKNDDPRRCTI 300 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~-~kr~LlVlDdv~~~~~-------~~~---l~~~~~~~~~~~~~~~~~~s~i 300 (724)
+..... . .......+...+.. +++.+|++|++..... ++. +...+ ...+..+
T Consensus 240 -----g~~~~g-~-~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l----------~~~~i~~ 302 (854)
T 1qvr_A 240 -----GAKYRG-E-FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL----------ARGELRL 302 (854)
T ss_dssp ------------C-HHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHH----------HTTCCCE
T ss_pred -----cCccch-H-HHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHH----------hCCCeEE
Confidence 000001 1 22233444444443 3679999999975421 111 11111 1123445
Q ss_pred EEEecccch-----hhhhcCCCceEecCCCCHHHHHHHHHHHhCC---CCCCCCchhHHHHHHHHhC
Q 004895 301 ILTSRSRDL-----LCIDMNSQKMFWIDALSEEEALQLFEKIVGE---STKASDFRPLAEEIVGKCG 359 (724)
Q Consensus 301 lvTtR~~~v-----~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~---~~~~~~l~~~~~~I~~~c~ 359 (724)
|.+|..... ..........+.+++++.++..+++...... .....-..+....+++.+.
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~ 369 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSH 369 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHh
Confidence 555543321 1111223346899999999999999765421 1111112345566666663
No 205
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.88 E-value=1.4e-05 Score=79.28 Aligned_cols=62 Identities=32% Similarity=0.378 Sum_probs=37.6
Q ss_pred cCCCCceEEEcCCCcCCCC---CccccCCCCCcEEEcCCcccCCcccccCCC--CCcEEEccCCcCc
Q 004895 572 EGTEELKVLDFTGIRFSPL---PSSLGRLINLQTLCLDGWRLEDIAIVGQLK--KLEILSLRGAEIK 633 (724)
Q Consensus 572 ~~l~~L~~L~l~~~~~~~l---p~~i~~l~~L~~L~L~~~~l~~~~~~~~l~--~L~~L~l~~~~i~ 633 (724)
.+++.|+.|+|++|.+..+ |..+..+++|++|+|++|.++....+..+. +|++|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCc
Confidence 4566677777777776643 344556666666776666666544444443 6666666666554
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.84 E-value=9.2e-05 Score=75.27 Aligned_cols=146 Identities=14% Similarity=0.124 Sum_probs=88.2
Q ss_pred chHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhc--cCCCeEEEEEEec-CCChHHHHHHHHHhhCCCC
Q 004895 164 SRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMED--NVFDKVVMAEITK-NPDAQKIQGELASDLGMNF 240 (724)
Q Consensus 164 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~vs~-~~~~~~l~~~i~~~l~~~~ 240 (724)
|.++.++.|...+..++.+...++|+.|+||||+|+.+++..... .+.+ +.+++.++ ..+++++ +++.+.+....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li~~~~~~p 78 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIKDFLNYSP 78 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHHHHHTSCC
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHHHHHhhcc
Confidence 345556677777776667789999999999999999998863211 2333 34555443 3333333 33444443211
Q ss_pred CCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCcCCCCCCCCCcEEEEEecccc-hhhhhcCCC
Q 004895 241 DSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD-LLCIDMNSQ 317 (724)
Q Consensus 241 ~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~-v~~~~~~~~ 317 (724)
. .+++-++|+|+++... ..+.+...+.. ....+.+|++|.+.. +... ....
T Consensus 79 ~-----------------~~~~kvviIdead~lt~~a~naLLk~LEe--------p~~~t~fIl~t~~~~kl~~t-I~SR 132 (305)
T 2gno_A 79 E-----------------LYTRKYVIVHDCERMTQQAANAFLKALEE--------PPEYAVIVLNTRRWHYLLPT-IKSR 132 (305)
T ss_dssp S-----------------SSSSEEEEETTGGGBCHHHHHHTHHHHHS--------CCTTEEEEEEESCGGGSCHH-HHTT
T ss_pred c-----------------cCCceEEEeccHHHhCHHHHHHHHHHHhC--------CCCCeEEEEEECChHhChHH-HHce
Confidence 0 1456899999997653 33333322322 334566766665443 3222 2222
Q ss_pred ceEecCCCCHHHHHHHHHHHh
Q 004895 318 KMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 318 ~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
.+++.++++++..+.+.+.+
T Consensus 133 -~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 133 -VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp -SEEEECCCCHHHHHHHHHHH
T ss_pred -eEeCCCCCHHHHHHHHHHHh
Confidence 89999999999999998876
No 207
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.84 E-value=8.6e-05 Score=86.08 Aligned_cols=152 Identities=19% Similarity=0.272 Sum_probs=87.7
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCC----Ce-EEEEEEecCCChHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVF----DK-VVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~-~~wv~vs~~~~~~~l~~~ 231 (724)
.....++||+++++.+.+.+......-+.++|++|+|||++|+.+++........ ++ ++.++.
T Consensus 177 ~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~------------ 244 (758)
T 3pxi_A 177 DSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM------------ 244 (758)
T ss_dssp SCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------------
T ss_pred CCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc------------
Confidence 3456789999999999999876555668899999999999999999986321110 11 122222
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccch--
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL-- 309 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v-- 309 (724)
+...... .......+.......++.+|++|. ..+..+.+...+ .....++|.||.....
T Consensus 245 -----g~~~~G~--~e~~l~~~~~~~~~~~~~iLfiD~--~~~~~~~L~~~l----------~~~~v~~I~at~~~~~~~ 305 (758)
T 3pxi_A 245 -----GTKYRGE--FEDRLKKVMDEIRQAGNIILFIDA--AIDASNILKPSL----------ARGELQCIGATTLDEYRK 305 (758)
T ss_dssp ---------------CTTHHHHHHHHHTCCCCEEEECC----------CCCT----------TSSSCEEEEECCTTTTHH
T ss_pred -----cccccch--HHHHHHHHHHHHHhcCCEEEEEcC--chhHHHHHHHHH----------hcCCEEEEeCCChHHHHH
Confidence 1110000 111233444444445778999991 111112222221 2334567766665441
Q ss_pred ----hhhhcCCCceEecCCCCHHHHHHHHHHHhC
Q 004895 310 ----LCIDMNSQKMFWIDALSEEEALQLFEKIVG 339 (724)
Q Consensus 310 ----~~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~ 339 (724)
..........+.+++.+.++..+++.....
T Consensus 306 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~ 339 (758)
T 3pxi_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGLRD 339 (758)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHH
Confidence 111112235799999999999999997654
No 208
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.83 E-value=0.00099 Score=66.01 Aligned_cols=181 Identities=15% Similarity=0.120 Sum_probs=95.5
Q ss_pred cccccccchHHHHHHHHHHh---cC---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 157 KDYNIFNSRKKIFQDVIEAL---KD---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L---~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
.....++|.+..++++.+.+ .. ...+-+.|+|++|+||||+|+.+++.... . .+.++.+.-.+
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~---~~~i~~~~~~~ 83 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV--P---FFTISGSDFVE 83 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTC--C---EEEECSCSSTT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--C---EEEEeHHHHHH
Confidence 34566778887766665443 21 12345889999999999999999987632 1 23333222111
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccc----------------cccccccCCCCc
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLEL----------------DKIGIPYGDVDE 288 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~----------------~~l~~~~~~~~~ 288 (724)
..... .......+.+......+.++++|+++....- ..+...+.
T Consensus 84 --------------~~~~~--~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~---- 143 (257)
T 1lv7_A 84 --------------MFVGV--GASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD---- 143 (257)
T ss_dssp --------------SCCCC--CHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHH----
T ss_pred --------------Hhhhh--hHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhh----
Confidence 00011 1122333444444456789999999543110 00100000
Q ss_pred CCCCCCCCCcEEEEEecccchh-hhhc---CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCC-chh
Q 004895 289 KDKNDDPRRCTIILTSRSRDLL-CIDM---NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGG-LPV 363 (724)
Q Consensus 289 ~~~~~~~~~s~ilvTtR~~~v~-~~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~G-lPL 363 (724)
......+..||.||...... .... .....+.++..+.++-.++++.........++ .....++..+.| .+-
T Consensus 144 --~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~--~~~~~la~~~~G~~~~ 219 (257)
T 1lv7_A 144 --GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD--IDAAIIARGTPGFSGA 219 (257)
T ss_dssp --TCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCCHH
T ss_pred --CcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCcc--ccHHHHHHHcCCCCHH
Confidence 00123345677777655421 1111 12346778888888888888877643221221 123457777777 554
Q ss_pred HHH
Q 004895 364 ALS 366 (724)
Q Consensus 364 ai~ 366 (724)
-+.
T Consensus 220 dl~ 222 (257)
T 1lv7_A 220 DLA 222 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 209
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.80 E-value=0.00023 Score=82.52 Aligned_cols=158 Identities=20% Similarity=0.287 Sum_probs=93.8
Q ss_pred cccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccC----CCeEEE-EEEecCCChHHHHHH
Q 004895 157 KDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV----FDKVVM-AEITKNPDAQKIQGE 231 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~w-v~vs~~~~~~~l~~~ 231 (724)
.....++||++++..+++.|......-+.|+|++|+|||++|+.+++....... .+..+| ++.+. +
T Consensus 183 ~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~------l--- 253 (758)
T 1r6b_X 183 GGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS------L--- 253 (758)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-----------
T ss_pred CCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHH------H---
Confidence 345678999999999999998666667889999999999999999998643211 133332 21111 0
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--------cc---cccccccCCCCcCCCCCCCCCcEE
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--------EL---DKIGIPYGDVDEKDKNDDPRRCTI 300 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--------~~---~~l~~~~~~~~~~~~~~~~~~s~i 300 (724)
. .+.... .. .......+...+...++.+|++||+.... .. ..+...+ ...+..+
T Consensus 254 -~--~~~~~~-g~-~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l----------~~~~~~~ 318 (758)
T 1r6b_X 254 -L--AGTKYR-GD-FEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL----------SSGKIRV 318 (758)
T ss_dssp ----CCCCCS-SC-HHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS----------SSCCCEE
T ss_pred -h--cccccc-ch-HHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH----------hCCCeEE
Confidence 0 011111 11 23344455555554567999999997541 11 1121111 2234556
Q ss_pred EEEecccchh------hhhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 301 ILTSRSRDLL------CIDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 301 lvTtR~~~v~------~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
|.+|...... .........+.+++.+.++..+++....
T Consensus 319 I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 319 IGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred EEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 6666543210 0011223468899999999999988764
No 210
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.79 E-value=2.1e-05 Score=73.89 Aligned_cols=116 Identities=10% Similarity=0.041 Sum_probs=84.8
Q ss_pred ccccCCCCCcEEEcCCc-ccCC------cccccCCCCCcEEEccCCcCcc-----cchhhhcCCCCCeEccCCCCCCccc
Q 004895 592 SSLGRLINLQTLCLDGW-RLED------IAIVGQLKKLEILSLRGAEIKQ-----LPLQIGQLTRLQLLDLSNCSSLVVI 659 (724)
Q Consensus 592 ~~i~~l~~L~~L~L~~~-~l~~------~~~~~~l~~L~~L~l~~~~i~~-----lp~~i~~l~~L~~L~l~~~~~l~~~ 659 (724)
..+...++|++|+|++| .+.. ...+...++|++|+|++|.+.. +...+...++|++|+|++| .+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 44567889999999999 8875 1456778899999999998873 4556777789999999995 44432
Q ss_pred ----ChHHhhCCCCCcEEEc--cCCCCccccccCCccc-hHHhhcCCCCCcEEEeeccccc
Q 004895 660 ----APNVISKLSRLEELYM--GDSFSQWDKVEGGSNA-SLAELKGLSKLTTLEIDVRDAE 713 (724)
Q Consensus 660 ----~~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~-~l~~L~~L~~L~~L~l~~n~~~ 713 (724)
....+...++|++|++ ++|.+... ... ....+...++|+.|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~-----g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNN-----VEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHH-----HHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHH-----HHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 1334677889999999 66543211 111 2234566789999999999874
No 211
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.77 E-value=3e-05 Score=81.01 Aligned_cols=19 Identities=21% Similarity=0.200 Sum_probs=10.4
Q ss_pred EecCCC-CHHHHHHHHHHHh
Q 004895 320 FWIDAL-SEEEALQLFEKIV 338 (724)
Q Consensus 320 ~~l~~L-~~~e~~~Lf~~~~ 338 (724)
...+.+ +.++|...|.+..
T Consensus 38 ~~~~~f~~~~~a~~~~~~l~ 57 (362)
T 2ra8_A 38 TQVKNFSSAGEAEKAAGKLI 57 (362)
T ss_dssp EEEEECSSHHHHHHHHHHHH
T ss_pred EEeeeCCCHHHHHHHHHHHH
Confidence 333334 4677766666653
No 212
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.76 E-value=0.00054 Score=74.35 Aligned_cols=180 Identities=12% Similarity=0.139 Sum_probs=101.6
Q ss_pred cccccchHHHHHHHHHHhc-------------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 159 YNIFNSRKKIFQDVIEALK-------------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~-------------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
...++|.+..+++|.+.+. .....-+.|+|++|+|||++|+.+++.... ..+.++++.
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~-----~fv~vn~~~---- 273 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-----FFFLINGPE---- 273 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS-----EEEEEEHHH----
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC-----CEEEEEchH----
Confidence 4567899998888877764 134457889999999999999999876521 133444321
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccCCCCcCCCC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-------------LDKIGIPYGDVDEKDKN 292 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~~ 292 (724)
+...+ .. . .......++.....+++.+|+||+++.... ...+...+.. .
T Consensus 274 ------l~~~~----~g-~-~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~------~ 335 (489)
T 3hu3_A 274 ------IMSKL----AG-E-SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG------L 335 (489)
T ss_dssp ------HHTSC----TT-H-HHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHH------S
T ss_pred ------hhhhh----cc-h-hHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhc------c
Confidence 11111 01 1 122233444444456789999999953311 0111111110 0
Q ss_pred CCCCCcEEEEEecccchh-hh--h-cCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCc-hhHHHH
Q 004895 293 DDPRRCTIILTSRSRDLL-CI--D-MNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGL-PVALST 367 (724)
Q Consensus 293 ~~~~~s~ilvTtR~~~v~-~~--~-~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~Gl-PLai~~ 367 (724)
....+..||.||...... .. . ......+.+...+.++-.++|..++.......+ ....++++.+.|+ +-.+..
T Consensus 336 ~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~--~~l~~la~~t~g~s~~dL~~ 413 (489)
T 3hu3_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHVGADLAA 413 (489)
T ss_dssp CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTT--CCHHHHHHTCTTCCHHHHHH
T ss_pred ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcch--hhHHHHHHHccCCcHHHHHH
Confidence 023345666676655321 11 1 122346889999999999999988753322211 1245677777775 434443
No 213
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.72 E-value=2.7e-05 Score=72.81 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=53.1
Q ss_pred hHHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC
Q 004895 165 RKKIFQDVIEALKD---DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD 241 (724)
Q Consensus 165 R~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~ 241 (724)
+++.++.+.+++.+ .....+.|+|++|+||||||+.+++.......+. +++++ ..++...+.........
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~~~~ 91 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcCchH
Confidence 44555555555432 3356899999999999999999999886332222 34443 33444444433321110
Q ss_pred CCchhHHHHHHHHHHHhcCCcEEEEEccccc
Q 004895 242 SNDLIYHRAKQLCQRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 272 (724)
. .+...+. +.-+|||||++.
T Consensus 92 ~---------~~~~~~~--~~~llilDE~~~ 111 (180)
T 3ec2_A 92 T---------KFLKTVL--NSPVLVLDDLGS 111 (180)
T ss_dssp S---------HHHHHHH--TCSEEEEETCSS
T ss_pred H---------HHHHHhc--CCCEEEEeCCCC
Confidence 0 2223333 456999999973
No 214
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.70 E-value=2.6e-05 Score=70.10 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=33.8
Q ss_pred cccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.++|+...+.++.+.+. .....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 46788888888887764 2233346799999999999999998764
No 215
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.69 E-value=9.5e-05 Score=70.47 Aligned_cols=88 Identities=20% Similarity=0.241 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCC----CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC
Q 004895 166 KKIFQDVIEALKDD----KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD 241 (724)
Q Consensus 166 ~~~~~~l~~~L~~~----~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~ 241 (724)
...++.+.+++... ....+.|+|++|+|||+||+.+++..... ...++|++++ ++...+......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 35 IKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEhH------HHHHHHHHHhcc---
Confidence 34455555555422 12688999999999999999999987643 3346676653 444444433221
Q ss_pred CCchhHHHHHHHHHHHhcCCcEEEEEccccc
Q 004895 242 SNDLIYHRAKQLCQRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 272 (724)
.. . ..+...+.+ .-+|||||++.
T Consensus 104 -~~-~----~~~~~~~~~--~~~lilDei~~ 126 (202)
T 2w58_A 104 -QT-M----NEKLDYIKK--VPVLMLDDLGA 126 (202)
T ss_dssp -CC-C----HHHHHHHHH--SSEEEEEEECC
T ss_pred -ch-H----HHHHHHhcC--CCEEEEcCCCC
Confidence 11 1 122333332 23999999965
No 216
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.69 E-value=0.00082 Score=72.34 Aligned_cols=175 Identities=17% Similarity=0.169 Sum_probs=97.0
Q ss_pred cccccchHHHHHHHHHHh---cCC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChH
Q 004895 159 YNIFNSRKKIFQDVIEAL---KDD---------KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQ 226 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L---~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 226 (724)
...++|.++.++++.+.+ ... -.+-+.|+|++|+|||+||+.+++..... .+.+++++....
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~-----f~~is~~~~~~~- 88 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVP-----FFHISGSDFVEL- 88 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEEEGGGTTTC-
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC-----eeeCCHHHHHHH-
Confidence 456778887666665543 211 13458899999999999999999876421 334444332211
Q ss_pred HHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc----------------ccccccccCCCCcCC
Q 004895 227 KIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE----------------LDKIGIPYGDVDEKD 290 (724)
Q Consensus 227 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~~ 290 (724)
... . .......++.......+.+|+||++..... ...+...+..
T Consensus 89 -------------~~g-~-~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~----- 148 (476)
T 2ce7_A 89 -------------FVG-V-GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDG----- 148 (476)
T ss_dssp -------------CTT-H-HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHH-----
T ss_pred -------------Hhc-c-cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhc-----
Confidence 000 0 122233344444445789999999965311 1111111100
Q ss_pred CCCCCCCcEEEEEecccchhh-hhc---CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 291 KNDDPRRCTIILTSRSRDLLC-IDM---NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 291 ~~~~~~~s~ilvTtR~~~v~~-~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
.....+..||.||....... ... .....+.++..+.++-.++++.++......++. ....|++.+.|..
T Consensus 149 -~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v--~l~~la~~t~G~s 221 (476)
T 2ce7_A 149 -FDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV--NLEIIAKRTPGFV 221 (476)
T ss_dssp -SCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC--CHHHHHHTCTTCC
T ss_pred -cCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh--hHHHHHHhcCCCc
Confidence 00223556777776654321 111 223477888888888888888777533222221 1455888888877
No 217
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.65 E-value=5.3e-05 Score=75.91 Aligned_cols=175 Identities=15% Similarity=0.192 Sum_probs=86.4
Q ss_pred cccccchHHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChH
Q 004895 159 YNIFNSRKKIFQDVIEALK---D---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQ 226 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 226 (724)
...++|.+..++.+.+.+. . ...+-+.|+|++|+|||+||+.+++.... .| +.+..+.-.+.
T Consensus 10 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~--~~---~~v~~~~~~~~- 83 (268)
T 2r62_A 10 FKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV--PF---FSMGGSSFIEM- 83 (268)
T ss_dssp STTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC--CC---CCCCSCTTTTS-
T ss_pred HHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC--CE---EEechHHHHHh-
Confidence 3456676665555554432 1 12334779999999999999999997643 12 11221111100
Q ss_pred HHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-----------------ccccccccCCCCcC
Q 004895 227 KIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-----------------LDKIGIPYGDVDEK 289 (724)
Q Consensus 227 ~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----------------~~~l~~~~~~~~~~ 289 (724)
..+..... ...+.......++.+|+|||+..... +..+...+.
T Consensus 84 --------~~~~~~~~-------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~----- 143 (268)
T 2r62_A 84 --------FVGLGASR-------VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD----- 143 (268)
T ss_dssp --------CSSSCSSS-------SSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTT-----
T ss_pred --------hcchHHHH-------HHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhh-----
Confidence 00110000 01122222234668999999965311 111111111
Q ss_pred CCCC-CCCCcEEEEEecccchhh-hhc---CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 290 DKND-DPRRCTIILTSRSRDLLC-IDM---NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 290 ~~~~-~~~~s~ilvTtR~~~v~~-~~~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
... ......||.||....... ... .....+.++..+.++-.+++...+......++. ....|++.+.|.|
T Consensus 144 -~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~--~~~~la~~~~g~~ 218 (268)
T 2r62_A 144 -GFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV--NLQEVAKLTAGLA 218 (268)
T ss_dssp -CSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSC--CTTTTTSSSCSSC
T ss_pred -CcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCcc--CHHHHHHHcCCCC
Confidence 001 112245666766554211 111 123567888899999999998876432211110 1223555666654
No 218
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.65 E-value=6.2e-05 Score=74.56 Aligned_cols=79 Identities=25% Similarity=0.323 Sum_probs=42.5
Q ss_pred cCCCCCcEEEcCCcccCCcc----cccCCCCCcEEEccCCcCcccchhhhcCC--CCCeEccCCCCCCcccC------hH
Q 004895 595 GRLINLQTLCLDGWRLEDIA----IVGQLKKLEILSLRGAEIKQLPLQIGQLT--RLQLLDLSNCSSLVVIA------PN 662 (724)
Q Consensus 595 ~~l~~L~~L~L~~~~l~~~~----~~~~l~~L~~L~l~~~~i~~lp~~i~~l~--~L~~L~l~~~~~l~~~~------~~ 662 (724)
.++++|++|+|++|.++.++ .+..+++|++|+|++|.++.+ ..+..+. +|+.|+|.+|......| ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 34566666777666666532 234666666666666666654 2234444 66666666643222222 12
Q ss_pred HhhCCCCCcEEE
Q 004895 663 VISKLSRLEELY 674 (724)
Q Consensus 663 ~i~~l~~L~~L~ 674 (724)
.+..+++|+.|+
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 345566666554
No 219
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.65 E-value=0.00016 Score=74.01 Aligned_cols=105 Identities=18% Similarity=0.279 Sum_probs=60.6
Q ss_pred cccchHHHHHHHHHHhcCC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALKDD---------KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
.++|.+..++.+...+... ....+.++|++|+|||++|+.+++..... -...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~--~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT--EEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC--GGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC--CcceEEeecccccccc-cHHH
Confidence 3568888887777766521 13579999999999999999999987432 1235566665543322 1112
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
+ ++......... ....+...+......+++||++...
T Consensus 95 l---~g~~~~~~~~~--~~~~~~~~~~~~~~~vl~lDEi~~l 131 (311)
T 4fcw_A 95 L---IGAPPGYVGYE--EGGQLTEAVRRRPYSVILFDAIEKA 131 (311)
T ss_dssp H---HCCCTTSTTTT--TCCHHHHHHHHCSSEEEEEETGGGS
T ss_pred h---cCCCCcccccc--ccchHHHHHHhCCCeEEEEeChhhc
Confidence 2 22221110000 0012333344345689999999765
No 220
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.52 E-value=0.0016 Score=67.27 Aligned_cols=181 Identities=18% Similarity=0.183 Sum_probs=95.7
Q ss_pred CcccccccchHHHHHHHHHHhcC-----CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC--ChHHH
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKD-----DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP--DAQKI 228 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~-----~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~l 228 (724)
+.....++|++..++.+...+.. .....+.|+|++|+||||||+.++...... | . ..+... ...++
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~--~---~--~~sg~~~~~~~~l 93 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN--I---H--VTSGPVLVKQGDM 93 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC--E---E--EEETTTCCSHHHH
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC--E---E--EEechHhcCHHHH
Confidence 34456678888877777655542 244678999999999999999999987431 1 1 112211 11111
Q ss_pred HHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccc--cccccccccCCCCc-----CCCC-----CCCC
Q 004895 229 QGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKL--ELDKIGIPYGDVDE-----KDKN-----DDPR 296 (724)
Q Consensus 229 ~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~-----~~~~-----~~~~ 296 (724)
..+...+ .++.++++|++.... ..+.+...+..... .... ....
T Consensus 94 ----------------------~~~~~~~--~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~ 149 (334)
T 1in4_A 94 ----------------------AAILTSL--ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQ 149 (334)
T ss_dssp ----------------------HHHHHHC--CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------C
T ss_pred ----------------------HHHHHHc--cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCC
Confidence 1111111 234577788875432 11111000000000 0000 0001
Q ss_pred CcEEE-EEecccchh-hhhcCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 297 RCTII-LTSRSRDLL-CIDMNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 297 ~s~il-vTtR~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
...++ .|++...+. .........+.+++.+.++..+++.+.+..... ..-.+.+..|++.+.|.|-.+..+
T Consensus 150 ~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~~~~~~~~ia~~~~G~~R~a~~l 222 (334)
T 1in4_A 150 PFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EIEDAAAEMIAKRSRGTPRIAIRL 222 (334)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CBCHHHHHHHHHTSTTCHHHHHHH
T ss_pred CeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-CcCHHHHHHHHHhcCCChHHHHHH
Confidence 12222 344433321 111122235889999999999999987642211 122567899999999999765433
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.51 E-value=0.0005 Score=70.22 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=36.7
Q ss_pred cccchHHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 161 IFNSRKKIFQDVIEALKD--------------DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.++|+++.++.+...+.. .....+.|+|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 467999888888776642 2345678999999999999999998773
No 222
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.42 E-value=0.001 Score=75.88 Aligned_cols=176 Identities=11% Similarity=0.125 Sum_probs=97.7
Q ss_pred cccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 159 YNIFNSRKKIFQDVIEALK----D---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
...+.|-++.+++|.+.+. . ...+-|.++|++|+|||+||+.+++..... .+.++.++
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~-----~~~v~~~~---- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF-----FFLINGPE---- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE-----EEEEEHHH----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe-----EEEEEhHH----
Confidence 3445566665555555432 1 235678999999999999999999876431 33444321
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccc-------------cccccccCCCCcCCCC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLEL-------------DKIGIPYGDVDEKDKN 292 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~-------------~~l~~~~~~~~~~~~~ 292 (724)
+... .... .......+++......+++|+||+++....- ..+...+. ..
T Consensus 274 ------l~sk----~~ge--se~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~md------g~ 335 (806)
T 3cf2_A 274 ------IMSK----LAGE--SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD------GL 335 (806)
T ss_dssp ------HHSS----CTTH--HHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHH------HC
T ss_pred ------hhcc----cchH--HHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHh------cc
Confidence 1111 1111 2334445555555567899999999754210 01100000 00
Q ss_pred CCCCCcEEEEEecccchhhhhc----CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchh
Q 004895 293 DDPRRCTIILTSRSRDLLCIDM----NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPV 363 (724)
Q Consensus 293 ~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPL 363 (724)
....+..||.||.......... .-...++++.-+.++-.++|+.+........+. ....|++++.|+--
T Consensus 336 ~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dv--dl~~lA~~T~Gfsg 408 (806)
T 3cf2_A 336 KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV--DLEQVANETHGHVG 408 (806)
T ss_dssp CGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTC--CHHHHHHHCCSCCH
T ss_pred cccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCccc--CHHHHHHhcCCCCH
Confidence 1223445666666554321111 233578888888888888988776532222221 25678888888753
No 223
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.42 E-value=0.0013 Score=71.23 Aligned_cols=48 Identities=19% Similarity=0.152 Sum_probs=36.6
Q ss_pred cccccchHHHHHHHHHHh---cCC--CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 159 YNIFNSRKKIFQDVIEAL---KDD--KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L---~~~--~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...++|.++.++.+...+ ..+ ..+-+.++|++|+|||++|+.+++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 467889998877654443 332 235788999999999999999999875
No 224
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.23 E-value=0.011 Score=58.20 Aligned_cols=151 Identities=16% Similarity=0.169 Sum_probs=77.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCc
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKR 262 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr 262 (724)
-+.|+|++|+||||||+.++..... ..+.++.. ++ .... ... .......+.+......+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~-----~~i~~~~~------~~----~~~~-----~~~-~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARV-----PFITASGS------DF----VEMF-----VGV-GAARVRDLFETAKRHAP 109 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC-----CEEEEEHH------HH----HHSC-----TTH-HHHHHHHHHHHHTTSSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeeHH------HH----HHHH-----hhH-HHHHHHHHHHHHHhcCC
Confidence 3899999999999999999987641 23333321 11 1110 000 11223334444333356
Q ss_pred EEEEEcccccccc----------------ccccccccCCCCcCCCCCCCCCcEEEEEecccchhhhh-c---CCCceEec
Q 004895 263 VLIILDNIWTKLE----------------LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLLCID-M---NSQKMFWI 322 (724)
Q Consensus 263 ~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l 322 (724)
.++++|++..... ...+...+.. ........++.||......... . .....+.+
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g------~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i 183 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG------FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAI 183 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHHHHHHT------CCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEEC
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhC------CCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEee
Confidence 8999999953210 0111111110 0012223455555555442111 1 23357788
Q ss_pred CCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 323 DALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 323 ~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
+..+.++-.++++..+......++ .....|++.+.|.-
T Consensus 184 ~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 221 (254)
T 1ixz_A 184 DAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 221 (254)
T ss_dssp CSCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred CCcCHHHHHHHHHHHHcCCCCCcc--cCHHHHHHHcCCCC
Confidence 888888888888877643211111 11345777776653
No 225
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.19 E-value=0.00047 Score=68.77 Aligned_cols=61 Identities=11% Similarity=0.118 Sum_probs=39.0
Q ss_pred ccccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC
Q 004895 160 NIFNSRKKIFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN 222 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (724)
..++|+...+..+.+.+. .....-+.|+|++|+|||++|+.+++...... ...+.++++..
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~--~~~~~v~~~~~ 68 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ--GPFISLNCAAL 68 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT--SCEEEEEGGGS
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC--CCeEEEecCCC
Confidence 456788888887776554 12234677999999999999999988653211 12455666543
No 226
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.18 E-value=0.0017 Score=71.64 Aligned_cols=165 Identities=20% Similarity=0.179 Sum_probs=77.3
Q ss_pred cccchHHHHHHHHHHhc------CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALK------DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~------~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
.++|-++....+.+.+. ......+.++|++|+||||||+.++...... ..-++++...+..++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~-----~~~i~~~~~~~~~~~~g~~~~ 156 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRK-----FVRISLGGVRDESEIRGHRRT 156 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCE-----EEEECCCC-------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-----eEEEEecccchhhhhhhHHHH
Confidence 35676766666644432 2345689999999999999999999887421 223333332222222211111
Q ss_pred hhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc------ccccccccCCCCcCCC-------CCCCCCcEEE
Q 004895 235 DLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE------LDKIGIPYGDVDEKDK-------NDDPRRCTII 301 (724)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~~~~-------~~~~~~s~il 301 (724)
..+... ........... ...-+++||++..... ...+...+........ ........||
T Consensus 157 ~ig~~~-------~~~~~~~~~a~-~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI 228 (543)
T 3m6a_A 157 YVGAMP-------GRIIQGMKKAG-KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFI 228 (543)
T ss_dssp --------------CHHHHHHTTC-SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEE
T ss_pred HhccCc-------hHHHHHHHHhh-ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEE
Confidence 111100 01111111111 1334889999975421 1222111110000000 0001345667
Q ss_pred EEecccchh-hhhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 302 LTSRSRDLL-CIDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 302 vTtR~~~v~-~~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
.||...... .........+.+.+++.++-.+++..+.
T Consensus 229 ~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 666654421 1111122478899999999888887754
No 227
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.10 E-value=0.027 Score=56.18 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=90.3
Q ss_pred cccccccchHHHHHHHHHHhc---C---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 157 KDYNIFNSRKKIFQDVIEALK---D---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 157 ~~~~~~~gR~~~~~~l~~~L~---~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
.....++|.++.+.++.+... . .-.+-+.|+|+.|+||||||+.++.... ...+.++.+
T Consensus 37 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~---- 107 (278)
T 1iy2_A 37 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS---- 107 (278)
T ss_dssp CCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH----
T ss_pred CCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH----
Confidence 335567787766555543321 1 0112388999999999999999998764 123333321
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc------------c----cccccccCCCCc
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE------------L----DKIGIPYGDVDE 288 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~------------~----~~l~~~~~~~~~ 288 (724)
++ .... ... .......+.+......+.++++|++..... + ..+...+..
T Consensus 108 --~~----~~~~-----~~~-~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg--- 172 (278)
T 1iy2_A 108 --DF----VEMF-----VGV-GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG--- 172 (278)
T ss_dssp --HH----HHST-----TTH-HHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT---
T ss_pred --HH----HHHH-----hhH-HHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC---
Confidence 11 1110 000 112233344443334568999999953210 0 111111111
Q ss_pred CCCCCCCCCcEEEEEecccchhhhh----cCCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 289 KDKNDDPRRCTIILTSRSRDLLCID----MNSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 289 ~~~~~~~~~s~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
........++.||......... ......+.++..+.++-.+++...+......++ .....+++.+.|..
T Consensus 173 ---g~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~--~~~~~la~~~~G~~ 245 (278)
T 1iy2_A 173 ---FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 245 (278)
T ss_dssp ---CCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTT--CCHHHHHHTCTTCC
T ss_pred ---CCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcc--cCHHHHHHHcCCCC
Confidence 0011223455555555442111 123457888888998888888877643221111 12345777777755
No 228
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.98 E-value=0.0025 Score=73.90 Aligned_cols=102 Identities=18% Similarity=0.257 Sum_probs=60.1
Q ss_pred cccchHHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALKD---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
.++|.++.++.+...+.. .....+.++|++|+|||++|+.+++... ...+.++++.......
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~---- 529 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHT---- 529 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSC----
T ss_pred hccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhh----
Confidence 467888888887776641 1234789999999999999999998772 2345566654332100
Q ss_pred HHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 232 LASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 232 i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
+.+.+|.... .........+...+......+|+||++...
T Consensus 530 ~~~l~g~~~g--~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~ 569 (758)
T 1r6b_X 530 VSRLIGAPPG--YVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 569 (758)
T ss_dssp CSSSCCCCSC--SHHHHHTTHHHHHHHHCSSEEEEEETGGGS
T ss_pred HhhhcCCCCC--CcCccccchHHHHHHhCCCcEEEEeCcccc
Confidence 0111222111 111111223344444455789999999764
No 229
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.97 E-value=0.0017 Score=75.19 Aligned_cols=157 Identities=16% Similarity=0.251 Sum_probs=83.2
Q ss_pred ccccchHHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHH
Q 004895 160 NIFNSRKKIFQDVIEALKD---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQG 230 (724)
Q Consensus 160 ~~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~ 230 (724)
..++|.+..++.+...+.. .....+.++|++|+|||++|+.+++..... -...+.++++...+.....
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~--~~~~i~i~~s~~~~~~~~~- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD--EESMIRIDMSEYMEKHSTS- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC--TTCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC--CcceEEEechhcccccccc-
Confidence 3477999988888777651 112368999999999999999999987421 2335666665432211000
Q ss_pred HHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc--ccccccccCC---CCcCCCCCCCCCcEEEEEec
Q 004895 231 ELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE--LDKIGIPYGD---VDEKDKNDDPRRCTIILTSR 305 (724)
Q Consensus 231 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~--~~~l~~~~~~---~~~~~~~~~~~~s~ilvTtR 305 (724)
...+...+......+|+||++..... ...+...+.. .............+||+||.
T Consensus 568 -------------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 568 -------------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ----------------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -------------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 01111222223446999999976521 1111111000 00000001224567888887
Q ss_pred ccc-------------hhh-hhcCCCceEecCCCCHHHHHHHHHHHh
Q 004895 306 SRD-------------LLC-IDMNSQKMFWIDALSEEEALQLFEKIV 338 (724)
Q Consensus 306 ~~~-------------v~~-~~~~~~~~~~l~~L~~~e~~~Lf~~~~ 338 (724)
... ... ....-...+.+.+++.++..+++...+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHH
Confidence 321 000 001122578899999988888776653
No 230
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.90 E-value=0.0012 Score=67.24 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=34.9
Q ss_pred cccchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.++|+...+.++.+.+. .....-|.|+|.+|+|||++|+.+++..
T Consensus 3 ~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 46788888888777664 2333456799999999999999998864
No 231
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.82 E-value=0.01 Score=64.28 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=90.8
Q ss_pred ccccccchHHHHHHHHHH---hcCC---------CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 158 DYNIFNSRKKIFQDVIEA---LKDD---------KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~---L~~~---------~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
....++|.++.+.++.+. +... -.+-+.|+|++|+||||||+.++..... ..+.++.+.-...
T Consensus 29 ~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~-----~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 29 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-----PFITASGSDFVEM 103 (499)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC-----CEEEEEGGGGTSS
T ss_pred CHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEehhHHHHh
Confidence 345677877766655543 3221 1234899999999999999999987642 2344443321110
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc----------------ccccccccCCCCcC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE----------------LDKIGIPYGDVDEK 289 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~----------------~~~l~~~~~~~~~~ 289 (724)
.. .. .......+.+......+.++++|++..... ...+...+..
T Consensus 104 --------------~~-g~-~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg---- 163 (499)
T 2dhr_A 104 --------------FV-GV-GAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG---- 163 (499)
T ss_dssp --------------CT-TH-HHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG----
T ss_pred --------------hh-hh-HHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc----
Confidence 00 00 111111222211112358999999964311 0111111110
Q ss_pred CCCCCCCCcEEEEEecccchhhhh-c---CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 290 DKNDDPRRCTIILTSRSRDLLCID-M---NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 290 ~~~~~~~~s~ilvTtR~~~v~~~~-~---~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
........|+.||......... . .....+.++..+.++-.++++.++......++ .....|++.+.|+.
T Consensus 164 --~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~d--v~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 164 --FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAED--VDLALLAKRTPGFV 236 (499)
T ss_dssp --CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCS--STTHHHHTTSCSCC
T ss_pred --cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChH--HHHHHHHHhcCCCC
Confidence 0122344566666665442111 1 22347888888888888888877643221111 12456778888765
No 232
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.76 E-value=0.0059 Score=59.62 Aligned_cols=92 Identities=14% Similarity=0.092 Sum_probs=55.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEEecCCChHHHHHHHHHhhCCCC----------CCCch
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDN----VFDKVVMAEITKNPDAQKIQGELASDLGMNF----------DSNDL 245 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~----------~~~~~ 245 (724)
.-.++.|+|++|+|||||+..++....... .-..++|++....++..++ ..+++.++... .....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL-LAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH-HHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 345999999999999999999988632211 1246888887765555444 34455555432 01110
Q ss_pred --hHHHHHHHHHHHhcCCcEEEEEccccc
Q 004895 246 --IYHRAKQLCQRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 246 --~~~~~~~l~~~l~~~kr~LlVlDdv~~ 272 (724)
.......+...+...+.-+||+|.+..
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 111223344444445678999999854
No 233
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.71 E-value=0.0053 Score=58.88 Aligned_cols=51 Identities=22% Similarity=0.183 Sum_probs=36.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDL 236 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l 236 (724)
.-.++.|+|++|+||||||..++. .. -..++|++.....+...+. .+.+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~--~~---~~~v~~i~~~~~~~~~~~~-~~~~~~ 69 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL--LS---GKKVAYVDTEGGFSPERLV-QMAETR 69 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HH---CSEEEEEESSCCCCHHHHH-HHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH--Hc---CCcEEEEECCCCCCHHHHH-HHHHhc
Confidence 345999999999999999999998 21 2458888877655655543 344433
No 234
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.70 E-value=0.0014 Score=65.95 Aligned_cols=69 Identities=20% Similarity=0.308 Sum_probs=44.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE--ecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI--TKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK 258 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 258 (724)
.+++.|+|++|+|||+||.+++.... ..++|+++ .+..+. .. .. .......+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G-----~~VlyIs~~~eE~v~~-------------~~--~~-le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALG-----GKDKYATVRFGEPLSG-------------YN--TD-FNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHH-----TTSCCEEEEBSCSSTT-------------CB--CC-HHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCC-----CCEEEEEecchhhhhh-------------hh--cC-HHHHHHHHHHHHh
Confidence 35678999999999999999988611 13567777 222111 00 11 3334455666665
Q ss_pred cCCcEEEEEccccc
Q 004895 259 KEKRVLIILDNIWT 272 (724)
Q Consensus 259 ~~kr~LlVlDdv~~ 272 (724)
+ .+ +||+|++..
T Consensus 182 ~-~~-LLVIDsI~a 193 (331)
T 2vhj_A 182 Q-HR-VIVIDSLKN 193 (331)
T ss_dssp H-CS-EEEEECCTT
T ss_pred h-CC-EEEEecccc
Confidence 4 44 999999854
No 235
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.69 E-value=0.008 Score=69.58 Aligned_cols=176 Identities=11% Similarity=0.135 Sum_probs=93.2
Q ss_pred ccccccchHHHHHHHHHHhcC-------------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 158 DYNIFNSRKKIFQDVIEALKD-------------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~~-------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
....++|.++.+++|.+++.. .....|.|+|++|+||||||+.++..... . .+.++.+.
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~--~---~i~v~~~~--- 273 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA--F---FFLINGPE--- 273 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC--E---EEEEEHHH---
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC--c---EEEEEchH---
Confidence 345678888877777766531 23457999999999999999999876532 1 23333211
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccccc-------------ccccccccCCCCcCCC
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLE-------------LDKIGIPYGDVDEKDK 291 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-------------~~~l~~~~~~~~~~~~ 291 (724)
+ . ..... . .......+.+......+.++++|++..... ...+...+..
T Consensus 274 ---l----~----~~~~g-~-~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g------ 334 (806)
T 1ypw_A 274 ---I----M----SKLAG-E-SESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDG------ 334 (806)
T ss_dssp ---H----S----SSSTT-H-HHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHS------
T ss_pred ---h----h----hhhhh-h-HHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhh------
Confidence 1 0 01111 1 122333344444334679999999954311 0111111110
Q ss_pred CCCCCCcEEEEEecccchhhhhc----CCCceEecCCCCHHHHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCch
Q 004895 292 NDDPRRCTIILTSRSRDLLCIDM----NSQKMFWIDALSEEEALQLFEKIVGESTKASDFRPLAEEIVGKCGGLP 362 (724)
Q Consensus 292 ~~~~~~s~ilvTtR~~~v~~~~~----~~~~~~~l~~L~~~e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlP 362 (724)
.....+..+|.||.......... .....+.+...+.++-.+++...+.......+ ....+++..+.|..
T Consensus 335 ~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~--~~l~~la~~t~g~~ 407 (806)
T 1ypw_A 335 LKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD--VDLEQVANETHGHV 407 (806)
T ss_dssp SCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTT--CCTHHHHHSCSSCC
T ss_pred hcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCccc--chhHHHHHhhcCcc
Confidence 00223455666665543211111 12245778888899999999877643221111 11235566666654
No 236
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.54 E-value=0.0092 Score=59.77 Aligned_cols=85 Identities=8% Similarity=0.138 Sum_probs=55.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC-----CchhHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS-----NDLIYHRAKQLCQRL 257 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~~~l 257 (724)
++-|.|++|+||||||.+++........=..++||+....++.. .+++++.+.+. +...++....+.+.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999999998876542112458899887777653 36777765431 111222212333343
Q ss_pred ---hcCCcEEEEEccccc
Q 004895 258 ---KKEKRVLIILDNIWT 272 (724)
Q Consensus 258 ---~~~kr~LlVlDdv~~ 272 (724)
..++.-++|+|-+..
T Consensus 105 ~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HTCCTTCCEEEEEECSTT
T ss_pred HHhhccCceEEEEecccc
Confidence 446788999999854
No 237
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.53 E-value=0.0082 Score=59.88 Aligned_cols=157 Identities=14% Similarity=0.165 Sum_probs=79.7
Q ss_pred cccccchHHHHHHHHHHhc----C---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh
Q 004895 159 YNIFNSRKKIFQDVIEALK----D---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA 225 (724)
Q Consensus 159 ~~~~~gR~~~~~~l~~~L~----~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~ 225 (724)
...+.|-++.++.|.+.+. . .-.+-+.|+|++|+||||||+.++..... ..+++..++-.+.
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM 83 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh
Confidence 4456677777666655432 0 11223899999999999999999986542 2344432221110
Q ss_pred HHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEccccccccc---------ccc-ccccCCCCcCCCCCCC
Q 004895 226 QKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTKLEL---------DKI-GIPYGDVDEKDKNDDP 295 (724)
Q Consensus 226 ~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~~~~---------~~l-~~~~~~~~~~~~~~~~ 295 (724)
. ..........+.+......++++++|++...... ..+ ...+.. .+.....
T Consensus 84 --------------~--~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~---Lsgg~~~ 144 (274)
T 2x8a_A 84 --------------Y--VGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTE---MDGLEAR 144 (274)
T ss_dssp --------------T--THHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHH---HHTCCST
T ss_pred --------------h--hhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHh---hhccccc
Confidence 0 0001122333444333346789999999643110 000 000000 0000012
Q ss_pred CCcEEEEEecccchhhhh----cCCCceEecCCCCHHHHHHHHHHHhC
Q 004895 296 RRCTIILTSRSRDLLCID----MNSQKMFWIDALSEEEALQLFEKIVG 339 (724)
Q Consensus 296 ~~s~ilvTtR~~~v~~~~----~~~~~~~~l~~L~~~e~~~Lf~~~~~ 339 (724)
...-++.+|....+.... ..-...+.++..+.++-.++|+....
T Consensus 145 ~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 145 QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 234456666665543111 12345677888888888888887653
No 238
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.50 E-value=0.014 Score=60.30 Aligned_cols=92 Identities=14% Similarity=0.243 Sum_probs=57.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEEecCCChHHHHHHHHHhhCCCCC------------CC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDN----VFDKVVMAEITKNPDAQKIQGELASDLGMNFD------------SN 243 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~------------~~ 243 (724)
.-.++.|+|++|+||||||.+++....... .-..++|++....++...+. .+++.++.... ..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~-~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLR-DIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHcCCCHHHHHhceeEeecCCH
Confidence 346899999999999999999988743211 12468999988877776654 44555554321 11
Q ss_pred chhHHHHHHHHHHHhc--CCcEEEEEccccc
Q 004895 244 DLIYHRAKQLCQRLKK--EKRVLIILDNIWT 272 (724)
Q Consensus 244 ~~~~~~~~~l~~~l~~--~kr~LlVlDdv~~ 272 (724)
.........+...+.. .+.-+||+|.+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~ 230 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMA 230 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGG
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHH
Confidence 1111223334444444 4667999998843
No 239
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.50 E-value=0.0088 Score=61.64 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=54.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC-----CchhHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS-----NDLIYHRAKQLCQ 255 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~~ 255 (724)
-+++.|+|++|+||||||.+++....... ..++|++....++.. .++.++...+. .....+....+..
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~~ 133 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVDE 133 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHHH
Confidence 46999999999999999999998875421 347888776666543 45566554221 1112333333333
Q ss_pred HHhcCCcEEEEEccccc
Q 004895 256 RLKKEKRVLIILDNIWT 272 (724)
Q Consensus 256 ~l~~~kr~LlVlDdv~~ 272 (724)
.+...+.-++|+|.+..
T Consensus 134 l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 134 LVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHTSCCSEEEEECTTT
T ss_pred HhhhcCCCeEEehHhhh
Confidence 33334566899999844
No 240
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.48 E-value=0.0017 Score=65.66 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
....+.++|++|+|||+||+.+++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346788999999999999999999884
No 241
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.47 E-value=0.0029 Score=56.74 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=29.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEe
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEIT 220 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (724)
....+.|+|+.|+|||||++.++...... .+ .+++++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g~-~~~~~~~~ 73 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-GK-NAAYIDAA 73 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-TC-CEEEEETT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-CC-cEEEEcHH
Confidence 55689999999999999999999987642 22 25666544
No 242
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.43 E-value=0.008 Score=61.06 Aligned_cols=54 Identities=15% Similarity=0.278 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHhcCC---CccEEEEEcCCCCcHHHHHHHHHHHHh-hccCCCeEEEEEEe
Q 004895 165 RKKIFQDVIEALKDD---KLNIIGVCGMGGVGKTTLVKQIAKQVM-EDNVFDKVVMAEIT 220 (724)
Q Consensus 165 R~~~~~~l~~~L~~~---~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~vs 220 (724)
+...+..+.+++... ....+.|+|++|+|||+||+.+++... .. . ..+++++++
T Consensus 133 ~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-g-~~v~~~~~~ 190 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-G-VSTTLLHFP 190 (308)
T ss_dssp HHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-C-CCEEEEEHH
T ss_pred HHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-C-CcEEEEEHH
Confidence 444455555555431 246888999999999999999999876 43 2 235566543
No 243
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.39 E-value=0.0087 Score=61.34 Aligned_cols=91 Identities=15% Similarity=0.212 Sum_probs=56.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhcc---------CC-----CeEEEEEEecCCChHHHHHHHHHhhCCCCC----
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDN---------VF-----DKVVMAEITKNPDAQKIQGELASDLGMNFD---- 241 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~---- 241 (724)
.-.++.|+|.+|+||||||.+++....... .. ..++|++....++..++. .+++.++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~-~~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIM-QMAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHH-HHHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHH-HHHHHcCCCHHHHhc
Confidence 346899999999999999999987642110 11 468999988877777665 44556654321
Q ss_pred -----CCchhH---HHHHHHHHHHhc-CCcEEEEEcccc
Q 004895 242 -----SNDLIY---HRAKQLCQRLKK-EKRVLIILDNIW 271 (724)
Q Consensus 242 -----~~~~~~---~~~~~l~~~l~~-~kr~LlVlDdv~ 271 (724)
...... .....+...+.+ .+.-+||+|.+.
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~ 214 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLT 214 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcH
Confidence 001011 123344444444 456789999874
No 244
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.37 E-value=0.012 Score=60.21 Aligned_cols=91 Identities=22% Similarity=0.241 Sum_probs=58.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccC----CCeEEEEEEecCCChHHHHHHHHHhhCCCCC---------CCchhH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNV----FDKVVMAEITKNPDAQKIQGELASDLGMNFD---------SNDLIY 247 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~---------~~~~~~ 247 (724)
-.++.|+|++|+||||||.+++........ -..++|++....++..++. .+++.++.... ......
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~-~~~~~~g~~~~~~~~~l~~~~~~~~~ 185 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIE-NMAKALGLDIDNVMNNIYYIRAINTD 185 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHH-HHHHHhCCCHHHHhccEEEEeCCCHH
Confidence 468999999999999999999886432110 2468999988877776664 44566654321 010011
Q ss_pred ---HHHHHHHHHHhc-CCcEEEEEccccc
Q 004895 248 ---HRAKQLCQRLKK-EKRVLIILDNIWT 272 (724)
Q Consensus 248 ---~~~~~l~~~l~~-~kr~LlVlDdv~~ 272 (724)
.....+...+.. .+.-+||+|.+..
T Consensus 186 ~~~~~l~~l~~~~~~~~~~~lvVIDsl~~ 214 (324)
T 2z43_A 186 HQIAIVDDLQELVSKDPSIKLIVVDSVTS 214 (324)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEETTTTH
T ss_pred HHHHHHHHHHHHHHhccCCCEEEEeCcHH
Confidence 223344444444 5677999999843
No 245
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.37 E-value=0.0058 Score=71.57 Aligned_cols=60 Identities=20% Similarity=0.365 Sum_probs=42.1
Q ss_pred cccchHHHHHHHHHHhcC---------CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC
Q 004895 161 IFNSRKKIFQDVIEALKD---------DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN 222 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~---------~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (724)
.++|.+..++.+...+.. .....+.|+|++|+|||++|+.+++...... ...+.++++..
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~~ 627 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEY 627 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTTC
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhc
Confidence 467999888888776642 1125789999999999999999999874311 12455555543
No 246
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.22 E-value=0.016 Score=60.11 Aligned_cols=85 Identities=20% Similarity=0.183 Sum_probs=53.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC-----CCchhHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD-----SNDLIYHRAKQLCQ 255 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 255 (724)
-.++.|.|.+|+||||||.+++...... -..++|++....++.. .++.++...+ ......+....+..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 4589999999999999999998876532 2368999988766543 2455554321 11112333333333
Q ss_pred HHhcCCcEEEEEccccc
Q 004895 256 RLKKEKRVLIILDNIWT 272 (724)
Q Consensus 256 ~l~~~kr~LlVlDdv~~ 272 (724)
.......-+||+|.+..
T Consensus 147 l~~~~~~~lVVIDsl~~ 163 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAA 163 (366)
T ss_dssp HHTTTCCSEEEEECTTT
T ss_pred HHhcCCCCEEEEeChHH
Confidence 33334456999999843
No 247
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.20 E-value=0.017 Score=59.63 Aligned_cols=86 Identities=17% Similarity=0.196 Sum_probs=53.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC-----CchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS-----NDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 254 (724)
.-+++.|+|++|+||||||.+++...... =..++|++....++.. .++.++...+. .....+....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 34689999999999999999998776532 2358899887766542 35556644221 111222222222
Q ss_pred HHHhcCCcEEEEEccccc
Q 004895 255 QRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~~ 272 (724)
......+.-+||+|.+..
T Consensus 133 ~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp HHHTTTCCSEEEEECGGG
T ss_pred HHHhcCCCCEEEEcChHh
Confidence 222334567999999854
No 248
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.20 E-value=0.0085 Score=68.37 Aligned_cols=95 Identities=14% Similarity=0.232 Sum_probs=59.7
Q ss_pred ccccccchHHHHHHHHHHhc----------C---CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 158 DYNIFNSRKKIFQDVIEALK----------D---DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 158 ~~~~~~gR~~~~~~l~~~L~----------~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
....+.|-++.++.|.+.+. . ...+-+.++|++|.|||.+|+.+++..... ++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~-------f~~v~~--- 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN-------FISIKG--- 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE-------EEECCH---
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc-------eEEecc---
Confidence 34456677777777766543 0 123457899999999999999999876432 333321
Q ss_pred hHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcccccc
Q 004895 225 AQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEKRVLIILDNIWTK 273 (724)
Q Consensus 225 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~kr~LlVlDdv~~~ 273 (724)
.+ ++.. .-.+ .+..+..++..-+...+++|++|+++..
T Consensus 545 -~~----l~s~----~vGe--se~~vr~lF~~Ar~~~P~IifiDEiDsl 582 (806)
T 3cf2_A 545 -PE----LLTM----WFGE--SEANVREIFDKARQAAPCVLFFDELDSI 582 (806)
T ss_dssp -HH----HHTT----TCSS--CHHHHHHHHHHHHTTCSEEEECSCGGGC
T ss_pred -ch----hhcc----ccch--HHHHHHHHHHHHHHcCCceeechhhhHH
Confidence 12 2211 1112 2345566666666667899999999753
No 249
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.19 E-value=0.049 Score=56.22 Aligned_cols=159 Identities=9% Similarity=-0.087 Sum_probs=95.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLK 258 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 258 (724)
.-.++..++|+.|.||++.+..+.+..... .|+....+.+....++.++... +...=.
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~---------------------~~~~pl 73 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQ-GFEEHHTFSIDPNTDWNAIFSL---------------------CQAMSL 73 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHH-TCCEEEEEECCTTCCHHHHHHH---------------------HHHHHH
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhC-CCCeeEEEEecCCCCHHHHHHH---------------------hcCcCC
Confidence 446789999999999999999998876532 3433222233333333333221 111111
Q ss_pred cCCcEEEEEccccc-c--ccccccccccCCCCcCCCCCCCCCcEEEEEecc-------cchhhhhcCCCceEecCCCCHH
Q 004895 259 KEKRVLIILDNIWT-K--LELDKIGIPYGDVDEKDKNDDPRRCTIILTSRS-------RDLLCIDMNSQKMFWIDALSEE 328 (724)
Q Consensus 259 ~~kr~LlVlDdv~~-~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~-------~~v~~~~~~~~~~~~l~~L~~~ 328 (724)
-+++-++|+|++.. . ..++.+...+.. ...++.+|+++-. ..+...-......++..+++.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~--------p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~ 145 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGL--------LHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQA 145 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTT--------CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTT
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhc--------CCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHH
Confidence 24678899999865 2 334444333322 3346666666543 1222222344568999999999
Q ss_pred HHHHHHHHHhCCCCCCCCchhHHHHHHHHhCCchhHHHHH
Q 004895 329 EALQLFEKIVGESTKASDFRPLAEEIVGKCGGLPVALSTV 368 (724)
Q Consensus 329 e~~~Lf~~~~~~~~~~~~l~~~~~~I~~~c~GlPLai~~~ 368 (724)
+....+.+.+....-.- -++.+..+++.++|.+..+...
T Consensus 146 ~l~~~l~~~~~~~g~~i-~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 146 QLPRWVAARAKQLNLEL-DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHHHHHHHTTCEE-CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHhchHHHHHHHH
Confidence 99988888774322111 1467888999999988877543
No 250
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.15 E-value=0.021 Score=60.38 Aligned_cols=132 Identities=15% Similarity=0.200 Sum_probs=83.8
Q ss_pred ccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCc--ccccCCCCCcEEEccCCcCcccch-hhhc
Q 004895 565 QISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDI--AIVGQLKKLEILSLRGAEIKQLPL-QIGQ 641 (724)
Q Consensus 565 ~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~~lp~-~i~~ 641 (724)
.+....|.++..|+.+.+..+...--...+.++.+|+.+.+.. .++.+ ..|.++.+|+.+++..+ ++.++. .+..
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred EcccceeeecccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 3445567788888888876543332234566778888888853 34442 46778888999988754 666654 4778
Q ss_pred CCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccc
Q 004895 642 LTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRD 711 (724)
Q Consensus 642 l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~ 711 (724)
+.+|+.+.+.. .+..+....+.++++|+.+++.++. ..+........|+.+.+..+.
T Consensus 333 C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~~-----------~~~~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 333 CEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGSR-----------SQWNAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp CTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSCH-----------HHHHTCBCCCCC---------
T ss_pred CCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCce-----------eehhhhhccCCCCEEEeCCCC
Confidence 88999998875 4677777788899999998887642 122344555667777665443
No 251
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.04 E-value=0.021 Score=59.09 Aligned_cols=86 Identities=19% Similarity=0.222 Sum_probs=53.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC-----CchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS-----NDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 254 (724)
.-+++.|.|.+|+||||||.+++....... ..++|++....++.. .++.++...+. .....+....+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~-----~a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH-----HHHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999999988765432 358899987766633 24555543211 111222222222
Q ss_pred HHHhcCCcEEEEEccccc
Q 004895 255 QRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~~ 272 (724)
......+.-+||+|.+..
T Consensus 135 ~l~~~~~~~lVVIDsl~~ 152 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVAA 152 (356)
T ss_dssp HHHHHTCCSEEEEECGGG
T ss_pred HHHhccCCCEEEEcCHHH
Confidence 222234556999999843
No 252
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.04 E-value=0.02 Score=60.13 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=55.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhcc----CCCeEEEEEEecCCChHHHHHHHHHhhCCCCC----------CCc--
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDN----VFDKVVMAEITKNPDAQKIQGELASDLGMNFD----------SND-- 244 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~----------~~~-- 244 (724)
-.++.|+|++|+|||||+..++-...... .-..++|++....++...+ ..+++.++.... ...
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~gl~~~~vleni~~~~~~~~~ 256 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFGLDPDDALNNVAYARAYNAD 256 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcCCChHhHhhcEEEeccCChH
Confidence 46999999999999999998764432211 1245889887776665544 446666664321 011
Q ss_pred hhHHHHHHHHHHHhcCCcEEEEEccccc
Q 004895 245 LIYHRAKQLCQRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 245 ~~~~~~~~l~~~l~~~kr~LlVlDdv~~ 272 (724)
........+...+...+.-+||+|.+-.
T Consensus 257 ~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 257 HQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred HHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 0112233344444445678999998743
No 253
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.98 E-value=0.028 Score=54.21 Aligned_cols=47 Identities=19% Similarity=0.273 Sum_probs=32.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGE 231 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~ 231 (724)
-.++.|+|++|+|||||++.++....... ..++|+.... ...++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~~--~~~~~~~~ 69 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDG--DPCIYVTTEE--SRDSIIRQ 69 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHT--CCEEEEESSS--CHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCC--CeEEEEEccc--CHHHHHHH
Confidence 35899999999999999999997665322 2466665433 34444433
No 254
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.93 E-value=0.028 Score=54.11 Aligned_cols=91 Identities=23% Similarity=0.265 Sum_probs=52.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhc---c-CCCeEEEEEEecCCChHHHHHHHHHhhCCCCC-----------CCc-
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMED---N-VFDKVVMAEITKNPDAQKIQGELASDLGMNFD-----------SND- 244 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~-----------~~~- 244 (724)
-.+++|+|+.|+|||||++.++...... . .-..++|+.......... +..+.+..+.... ...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER-IREIAQNRGLDPDEVLKHIYVARAFNSN 103 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHH-HHHHHHHTTSCHHHHHHTEEEEECCSHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHH-HHHHHHHcCCCHHHHhhcEEEEecCChH
Confidence 4699999999999999999998754321 1 123478887655444333 3344444433211 010
Q ss_pred hhHHHHHHHHHHHh-----cCCcEEEEEccccc
Q 004895 245 LIYHRAKQLCQRLK-----KEKRVLIILDNIWT 272 (724)
Q Consensus 245 ~~~~~~~~l~~~l~-----~~kr~LlVlDdv~~ 272 (724)
........+...+. ..++-++|+|..-.
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 104 HQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred HHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 01111233333343 45678999998754
No 255
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.93 E-value=0.0086 Score=56.65 Aligned_cols=44 Identities=20% Similarity=0.336 Sum_probs=35.0
Q ss_pred chHHHHHHHHHHhcC---CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 164 SRKKIFQDVIEALKD---DKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 164 gR~~~~~~l~~~L~~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.|++.++.+.+.+.. ....+|+|+|+.|+||||+++.+......
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356677777777653 34579999999999999999999887654
No 256
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.88 E-value=0.07 Score=56.21 Aligned_cols=146 Identities=14% Similarity=0.129 Sum_probs=78.3
Q ss_pred CCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCCccccCCCCCcEEEcCCcccCCcccccCCCCCcEEEc
Q 004895 548 CPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLPSSLGRLINLQTLCLDGWRLEDIAIVGQLKKLEILSL 627 (724)
Q Consensus 548 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp~~i~~l~~L~~L~L~~~~l~~~~~~~~l~~L~~L~l 627 (724)
+.+|+.+.+. .....+....|.++..|..+.+..+...--...+..+..++.+....+.+.. ..+..+.+|+.+.+
T Consensus 229 ~~~l~~i~ip---~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~-~~F~~~~~L~~i~l 304 (394)
T 4fs7_A 229 KTGVKNIIIP---DSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPE-KTFYGCSSLTEVKL 304 (394)
T ss_dssp TCCCCEEEEC---TTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECT-TTTTTCTTCCEEEE
T ss_pred cCCCceEEEC---CCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecc-cccccccccccccc
Confidence 3455555552 1122344445666667777766655333223345555666666554433211 23556666777776
Q ss_pred cCCcCcccch-hhhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCCCCccccccCCccchHHhhcCCCCCcEEE
Q 004895 628 RGAEIKQLPL-QIGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLE 706 (724)
Q Consensus 628 ~~~~i~~lp~-~i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~ 706 (724)
..+ ++.++. .+..+++|+.+.+.. .+..+....+.++++|+.+.+..+ +... .-..+.++.+|+.+.
T Consensus 305 ~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~------l~~I---~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 305 LDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS------LRKI---GANAFQGCINLKKVE 372 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT------CCEE---CTTTBTTCTTCCEEE
T ss_pred ccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc------ccEe---hHHHhhCCCCCCEEE
Confidence 543 555543 366677777777754 355666666677777777766443 1100 112345566677766
Q ss_pred eec
Q 004895 707 IDV 709 (724)
Q Consensus 707 l~~ 709 (724)
+..
T Consensus 373 lp~ 375 (394)
T 4fs7_A 373 LPK 375 (394)
T ss_dssp EEG
T ss_pred ECC
Confidence 653
No 257
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.80 E-value=0.01 Score=56.45 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEe
Q 004895 167 KIFQDVIEALKD--DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEIT 220 (724)
Q Consensus 167 ~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (724)
+.+++|.+.+.. ....+|+|+|+.|+|||||++.+.......+ ....+|...
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--~~~g~v~~d 59 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQG--LPAEVVPMD 59 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHHHTT--CCEEEEESG
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcC--CceEEEecC
Confidence 455666666653 4567999999999999999999998876421 124455543
No 258
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.80 E-value=0.031 Score=56.20 Aligned_cols=59 Identities=22% Similarity=0.196 Sum_probs=37.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec-CCChHHHHHHHHHhhCCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK-NPDAQKIQGELASDLGMN 239 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~i~~~l~~~ 239 (724)
...+++|+|++|+||||++..++.....+.. ..+..+.... .....+.+....+..+.+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~ 163 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAP 163 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCC
Confidence 4569999999999999999999988764222 2355555432 122333344444444443
No 259
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.71 E-value=0.0036 Score=55.66 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=31.7
Q ss_pred cccchHHHHHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 161 IFNSRKKIFQDVIEALKD--DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.++|+...++++.+.+.. ....-|.|+|++|+|||++|+.+++..
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 467888888777776541 223346799999999999999987643
No 260
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.70 E-value=0.062 Score=56.81 Aligned_cols=29 Identities=34% Similarity=0.499 Sum_probs=25.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
...+|.++|.+|+||||++..++.....+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 46799999999999999999999887653
No 261
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.69 E-value=0.018 Score=59.25 Aligned_cols=99 Identities=21% Similarity=0.211 Sum_probs=55.0
Q ss_pred HHHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCe-EEEEEEecCCChHHHHHHHHHhhCC-----CCCCC
Q 004895 171 DVIEALK-DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDK-VVMAEITKNPDAQKIQGELASDLGM-----NFDSN 243 (724)
Q Consensus 171 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~l~~~i~~~l~~-----~~~~~ 243 (724)
+.++.+. -.+-..++|+|+.|+|||||++.+.+....+ +-+. ++++-+.+... + ..++.+.+.. ..+++
T Consensus 163 raID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~-~~~v~~I~~lIGER~~--E-v~~~~~~~~~~vV~atadep 238 (422)
T 3ice_A 163 RVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN-HPDCVLMVLLIDERPE--E-VTEMQRLVKGEVVASTFDEP 238 (422)
T ss_dssp HHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHH-CTTSEEEEEEESSCHH--H-HHHHHTTCSSEEEEECTTSC
T ss_pred eeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhc-CCCeeEEEEEecCChH--H-HHHHHHHhCeEEEEeCCCCC
Confidence 3444443 2345689999999999999999998876542 2232 34566665432 1 2234444321 12222
Q ss_pred chhHH----HHHHHHHHHh-cCCcEEEEEcccccc
Q 004895 244 DLIYH----RAKQLCQRLK-KEKRVLIILDNIWTK 273 (724)
Q Consensus 244 ~~~~~----~~~~l~~~l~-~~kr~LlVlDdv~~~ 273 (724)
..... .+-.+.+++. +++++||++||+...
T Consensus 239 ~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~ 273 (422)
T 3ice_A 239 ASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRL 273 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHH
Confidence 21111 1111223332 479999999999543
No 262
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.49 E-value=0.022 Score=60.44 Aligned_cols=90 Identities=18% Similarity=0.306 Sum_probs=52.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHHHHhhC--------CCCCCCchhHH----
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGELASDLG--------MNFDSNDLIYH---- 248 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~--------~~~~~~~~~~~---- 248 (724)
..++|+|..|+|||||++.+....... +-+.++++.+.+.. ...++..++...-. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 468999999999999999999886543 22445666666543 33445544543200 01111110111
Q ss_pred HHHHHHHHHh--cCCcEEEEEccccc
Q 004895 249 RAKQLCQRLK--KEKRVLIILDNIWT 272 (724)
Q Consensus 249 ~~~~l~~~l~--~~kr~LlVlDdv~~ 272 (724)
..-.+.+++. +++++|+++||+..
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~itR 256 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNIFR 256 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECTHH
T ss_pred HHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1123444444 37899999999954
No 263
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.49 E-value=0.055 Score=55.06 Aligned_cols=51 Identities=18% Similarity=0.238 Sum_probs=38.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
-.++.|.|.+|+||||||.+++.....+. ..++|++.. .+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 45899999999999999999998765432 567787755 4566776666654
No 264
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.45 E-value=0.084 Score=52.84 Aligned_cols=29 Identities=31% Similarity=0.256 Sum_probs=25.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
....+|+|+|+.|+||||||+.+......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 45679999999999999999999888764
No 265
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.38 E-value=0.0099 Score=54.41 Aligned_cols=25 Identities=20% Similarity=0.243 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988763
No 266
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=95.36 E-value=0.11 Score=66.91 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhcCC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKKEK 261 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~k 261 (724)
+-+.++|++|+|||++|+.+..... .+ ..+.++.+...+...+++.+-..+........ .+..--..++
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~---~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g-------~~~~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSS---LY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKG-------LTLLPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCS---SC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTT-------EEEEEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCC---CC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCC-------ccccCCCCCc
Confidence 4567999999999999987765431 12 35567778777777776666655432210000 0000000257
Q ss_pred cEEEEEcccc
Q 004895 262 RVLIILDNIW 271 (724)
Q Consensus 262 r~LlVlDdv~ 271 (724)
+.++++||+.
T Consensus 1337 ~~VlFiDEin 1346 (2695)
T 4akg_A 1337 NLVLFCDEIN 1346 (2695)
T ss_dssp CEEEEEETTT
T ss_pred eEEEEecccc
Confidence 8999999974
No 267
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.30 E-value=0.021 Score=58.75 Aligned_cols=44 Identities=20% Similarity=0.263 Sum_probs=36.0
Q ss_pred cccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 161 IFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.++|+++.++.+...+..+. -+.++|++|+|||+||+.+++...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~~--~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTGG--HILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHTC--CEEEESCCCHHHHHHHHHHHHHTT
T ss_pred ceeCcHHHHHHHHHHHHcCC--eEEEECCCCCcHHHHHHHHHHHhC
Confidence 46789988888887776533 578999999999999999988663
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.29 E-value=0.01 Score=54.70 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+|.|+|++|+||||+|+.+.+...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999988753
No 269
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.25 E-value=0.094 Score=55.41 Aligned_cols=57 Identities=23% Similarity=0.240 Sum_probs=36.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCCh--HHHHHHHHHhhCCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDA--QKIQGELASDLGMN 239 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~l~~~i~~~l~~~ 239 (724)
...+|.++|++|+||||++..++.....++ . .+..++.. .+.. .+-+....+..+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G-~-kVllv~~D-~~r~~a~eqL~~~~~~~gv~ 154 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRG-Y-KVGLVAAD-VYRPAAYDQLLQLGNQIGVQ 154 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTT-C-CEEEEEEC-CSCHHHHHHHHHHHHTTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEecC-ccchhHHHHHHHHHHhcCCc
Confidence 367999999999999999999998886532 2 24444433 3332 23344445555543
No 270
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.24 E-value=0.048 Score=57.08 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=80.5
Q ss_pred cCCCccEEEEecccccccccchhhhcCCCCceEEEcCCCcCCCCC-ccccCCCCCcEEEcCCcccCC--cccccCCCCCc
Q 004895 547 ECPQLKLFLLFAKYDSTLQISDHFFEGTEELKVLDFTGIRFSPLP-SSLGRLINLQTLCLDGWRLED--IAIVGQLKKLE 623 (724)
Q Consensus 547 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~lp-~~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~ 623 (724)
.+.+|+.+.+. .....+....|.++..|+.+.+..+ ++.++ ..+.++.+|+.+.+..+ +.. ...+.++.+|+
T Consensus 215 ~~~~l~~i~~~---~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITIT---SGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEECC---TTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccceeeec---cceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 34556665551 1233445556777777777777654 44432 34566777777777543 333 24567778888
Q ss_pred EEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccC
Q 004895 624 ILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGD 677 (724)
Q Consensus 624 ~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 677 (724)
.+.+.++.++.++.. +.++.+|+.+.+.. .+..+....+.++++|+.+.+..
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECC
Confidence 888887777777544 77788888888865 36667666777888888777644
No 271
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.24 E-value=0.072 Score=55.00 Aligned_cols=93 Identities=24% Similarity=0.307 Sum_probs=53.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhc--c-CC-CeEEEEEEecCCChHHHHHHHHHhhCCCCC----------C-C-
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMED--N-VF-DKVVMAEITKNPDAQKIQGELASDLGMNFD----------S-N- 243 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~-~F-~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~----------~-~- 243 (724)
.-.++.|+|+.|+|||||+..++...... . .. ..++|++....+....+ ..+++..+.... . .
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45699999999999999999998875211 1 11 23588887665544433 345554433210 0 0
Q ss_pred chhHHHHHHHHHHHhc-----CCcEEEEEcccccc
Q 004895 244 DLIYHRAKQLCQRLKK-----EKRVLIILDNIWTK 273 (724)
Q Consensus 244 ~~~~~~~~~l~~~l~~-----~kr~LlVlDdv~~~ 273 (724)
.........+...+.. .+.-+||+|.+-..
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ 243 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSH 243 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTT
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHh
Confidence 0011222333333332 46789999998543
No 272
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.19 E-value=0.013 Score=55.27 Aligned_cols=27 Identities=37% Similarity=0.411 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...+|.|+|+.|+||||+|+.+.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 346899999999999999999998763
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.18 E-value=0.011 Score=54.35 Aligned_cols=20 Identities=35% Similarity=0.645 Sum_probs=18.9
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQI 201 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v 201 (724)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47999999999999999999
No 274
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.10 E-value=0.012 Score=60.94 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=36.4
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+.....++|.+..+..+...+......-+.|+|++|+|||++|+.+++...
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 334556889888666554443332333488999999999999999998764
No 275
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.05 E-value=0.038 Score=53.97 Aligned_cols=38 Identities=24% Similarity=0.198 Sum_probs=27.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh-hccCCCeEEEEEE
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM-EDNVFDKVVMAEI 219 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~~F~~~~wv~v 219 (724)
.-.+++|+|+.|+|||||++.++.... .. -..++|+..
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~--~~~~~~~~~ 67 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTL 67 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEEc
Confidence 345999999999999999999985432 11 234556553
No 276
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.05 E-value=0.1 Score=50.65 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=29.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK 221 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 221 (724)
-.++.|.|++|+||||||.+++...... =..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccC
Confidence 4589999999999999999887765432 23577877544
No 277
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=95.03 E-value=0.09 Score=55.66 Aligned_cols=101 Identities=22% Similarity=0.321 Sum_probs=62.8
Q ss_pred HHHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHHHHhhCCC---------
Q 004895 171 DVIEALK-DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGELASDLGMN--------- 239 (724)
Q Consensus 171 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i~~~l~~~--------- 239 (724)
+.++.|. =.+-..++|+|..|+|||+|+..+.+.... .+-+.++++-+.+.. ...++.+++.+.-...
T Consensus 142 r~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~~~~rtv 220 (482)
T 2ck3_D 142 KVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAK-AHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVA 220 (482)
T ss_dssp HHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTT-TCSSEEEEEEESCCHHHHHHHHHHHHHHTSSCSSSSCCCEE
T ss_pred EEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHh-hCCCEEEEEECCCcchHHHHHHHHhhhccccccccCCceEE
Confidence 3455554 234458999999999999999999987643 334667788777654 3456666666542211
Q ss_pred -----CCCCchh----HHHHHHHHHHHh--cCCcEEEEEccccc
Q 004895 240 -----FDSNDLI----YHRAKQLCQRLK--KEKRVLIILDNIWT 272 (724)
Q Consensus 240 -----~~~~~~~----~~~~~~l~~~l~--~~kr~LlVlDdv~~ 272 (724)
.+++... ....-.+.+++. +++++||++||+-.
T Consensus 221 vV~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR 264 (482)
T 2ck3_D 221 LVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFR 264 (482)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 1111101 112233445554 37999999999854
No 278
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.02 E-value=0.015 Score=54.07 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+.|.|+|+.|+||||+|+.+.+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998763
No 279
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.94 E-value=0.014 Score=53.99 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
-.+++|+|+.|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999988653
No 280
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.93 E-value=0.024 Score=54.53 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=30.5
Q ss_pred HHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 168 IFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 168 ~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
..+.+...+......+|.|+|.+|+|||||+..+......
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3444444444556789999999999999999999987643
No 281
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.91 E-value=0.014 Score=53.77 Aligned_cols=22 Identities=32% Similarity=0.462 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAK 203 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (724)
.+|.|.|++|+||||+|+.+.+
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 282
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.91 E-value=0.1 Score=55.35 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=48.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec-CCChHHHHHHHHHhhCCCCCC---CchhHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK-NPDAQKIQGELASDLGMNFDS---NDLIYHRAKQLCQ 255 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~l~~ 255 (724)
..++|.++|.+|+||||++..++.....+... .+.-+++.. .....+.+.......+.+.-. .............
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~-kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKK-KVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCC-CEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCC-eEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 46799999999999999999999988754122 355555542 223333333344444433111 1112233333444
Q ss_pred HHhcCCcEEEEEccc
Q 004895 256 RLKKEKRVLIILDNI 270 (724)
Q Consensus 256 ~l~~~kr~LlVlDdv 270 (724)
.+....-=++|+|-.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 443222236666764
No 283
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.90 E-value=0.018 Score=54.41 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
....+|+|+|+.|+||||+++.+....
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 455799999999999999999998766
No 284
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.87 E-value=0.015 Score=54.25 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999764
No 285
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.86 E-value=0.019 Score=54.23 Aligned_cols=29 Identities=34% Similarity=0.501 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 178 DDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.....+|+|+|+.|+||||+++.+.....
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567999999999999999999998876
No 286
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.86 E-value=0.014 Score=53.59 Aligned_cols=25 Identities=36% Similarity=0.444 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+|+|+|+.|+||||+++.+.....
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988653
No 287
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.83 E-value=0.35 Score=49.17 Aligned_cols=57 Identities=28% Similarity=0.362 Sum_probs=37.4
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC--ChHHHHHHHHHhhCC
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP--DAQKIQGELASDLGM 238 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~l~~~i~~~l~~ 238 (724)
....+++|+|+.|+||||+++.++...+... ..+.++. .+.+ ...+-+....+.++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~--g~V~l~g-~D~~r~~a~eql~~~~~~~gv 185 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHG--FSVVIAA-SDTFRAGAIEQLEEHAKRIGV 185 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEE-ECCSSTTHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcC--CEEEEEe-ecccccchHHHHHHHHHHcCc
Confidence 4567999999999999999999998876532 1244443 3332 233444555666654
No 288
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.78 E-value=0.018 Score=53.76 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.+|.|.|+.|+||||+|+.+.+....
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999998763
No 289
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.78 E-value=0.021 Score=53.03 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
...+|.|+|++|+||||+++.++.....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4568999999999999999999998764
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.77 E-value=0.015 Score=54.90 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..+|.|+|+.|+||||+|+.+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998876
No 291
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=94.76 E-value=0.58 Score=49.03 Aligned_cols=106 Identities=13% Similarity=0.169 Sum_probs=76.1
Q ss_pred ccCCCCCcEEEcCCcccCC-cccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCc
Q 004895 594 LGRLINLQTLCLDGWRLED-IAIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLE 671 (724)
Q Consensus 594 i~~l~~L~~L~L~~~~l~~-~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~ 671 (724)
+..+.+|+.+.+..+...- ...+.++.+|+.+.+. +.++.++.. +..+.+|+.+.+.. .++.+....+..+++|+
T Consensus 261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~ 337 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLE 337 (394)
T ss_dssp TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCC
T ss_pred eeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCC
Confidence 4566778888876553222 2567788899999986 457777665 77889999999976 46778778889999999
Q ss_pred EEEccCCCCccccccCCccchHHhhcCCCCCcEEEeeccc
Q 004895 672 ELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIDVRD 711 (724)
Q Consensus 672 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~l~~n~ 711 (724)
.+.+..+ +.... -..+.++++|+.+.+..+.
T Consensus 338 ~i~ip~s------v~~I~---~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 338 RIAIPSS------VTKIP---ESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp EEEECTT------CCBCC---GGGGTTCTTCCEEEESSCH
T ss_pred EEEECcc------cCEEh---HhHhhCCCCCCEEEECCce
Confidence 9988653 22111 1346678889999988764
No 292
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.75 E-value=0.02 Score=53.45 Aligned_cols=25 Identities=36% Similarity=0.428 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..+|.|.|++|+||||+|+.+....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998866
No 293
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.69 E-value=0.02 Score=53.30 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.+|.|.|++|+||||+|+.+.+....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999987753
No 294
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.67 E-value=0.019 Score=53.13 Aligned_cols=26 Identities=46% Similarity=0.492 Sum_probs=22.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.++|.|+|++|+||||+|+.+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 45788999999999999999988763
No 295
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=94.64 E-value=0.13 Score=54.03 Aligned_cols=61 Identities=18% Similarity=0.250 Sum_probs=38.8
Q ss_pred ccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccC
Q 004895 614 AIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGD 677 (724)
Q Consensus 614 ~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~ 677 (724)
..+.++.+|+.+.+..+ +..++.. +..+.+|+.+.+.. .+..+....+..++.|+.+.+..
T Consensus 156 ~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~--~~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR--NLKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTTTTCTTCCBCCCCT
T ss_pred hhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC--CceEeCchhhccccccceeecCC
Confidence 34667777888887654 3445443 66677788777765 35556555666777776665544
No 296
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.64 E-value=0.026 Score=51.27 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=24.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
..+++.|+|+.|+|||||+..+......
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 4579999999999999999999998764
No 297
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.63 E-value=0.021 Score=51.99 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=23.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...+|+|.|+.|+||||+|+.+.....
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999988764
No 298
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.62 E-value=0.13 Score=53.66 Aligned_cols=109 Identities=15% Similarity=0.234 Sum_probs=80.8
Q ss_pred cchhhhcCCCCceEEEcCCCcCCCC-CccccCCCCCcEEEcCCcccCC--cccccCCCCCcEEEccCCcCcccchh-hhc
Q 004895 566 ISDHFFEGTEELKVLDFTGIRFSPL-PSSLGRLINLQTLCLDGWRLED--IAIVGQLKKLEILSLRGAEIKQLPLQ-IGQ 641 (724)
Q Consensus 566 ~~~~~~~~l~~L~~L~l~~~~~~~l-p~~i~~l~~L~~L~L~~~~l~~--~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~ 641 (724)
+....+.....|..+.+..+ +..+ ...+..+.+|+.+.+..+ ++. ...+.++.+|+.+.+.. .++.++.. +..
T Consensus 208 i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~ 284 (379)
T 4h09_A 208 VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSG 284 (379)
T ss_dssp ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTT
T ss_pred Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccc
Confidence 33445667778888887654 3333 345677888999998765 444 25677888999999965 46677654 788
Q ss_pred CCCCCeEccCCCCCCcccChHHhhCCCCCcEEEccCC
Q 004895 642 LTRLQLLDLSNCSSLVVIAPNVISKLSRLEELYMGDS 678 (724)
Q Consensus 642 l~~L~~L~l~~~~~l~~~~~~~i~~l~~L~~L~l~~~ 678 (724)
+++|+.+.+.+ +.+..++...+.++++|+.+.+..+
T Consensus 285 c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 285 CSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp CTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT
T ss_pred ccccccccccc-cccceehhhhhcCCCCCCEEEcCcc
Confidence 99999999987 4677888888999999999998653
No 299
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.58 E-value=0.086 Score=65.71 Aligned_cols=85 Identities=19% Similarity=0.192 Sum_probs=56.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC-----CchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS-----NDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 254 (724)
..+++.|+|++|+|||+||.++....... =..++|+++.+.++... ++.++.+.+. ....+.....+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 45799999999999999999998876542 23578888887766544 5556643211 111233344444
Q ss_pred HHHhcCCcEEEEEcccc
Q 004895 255 QRLKKEKRVLIILDNIW 271 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~ 271 (724)
......+..+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 44455678899999994
No 300
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.56 E-value=0.019 Score=52.82 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
..|.|+|++|+||||+|+.+.....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999998764
No 301
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.56 E-value=0.043 Score=56.03 Aligned_cols=42 Identities=26% Similarity=0.453 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhc----CCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 166 KKIFQDVIEALK----DDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 166 ~~~~~~l~~~L~----~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
+...+.+++.+. .+....|.|+|+.|+||||+++.++.....
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 444555555543 455667999999999999999999987653
No 302
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.55 E-value=0.021 Score=56.15 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+|.|+|+.|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988763
No 303
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.55 E-value=0.034 Score=57.91 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=35.1
Q ss_pred ccchHHHHHHHHHHhc-------------C--CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 162 FNSRKKIFQDVIEALK-------------D--DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 162 ~~gR~~~~~~l~~~L~-------------~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
++|.+..++.+...+. . .....+.++|++|+|||++|+.+++..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 5788888888877762 1 134568899999999999999999876
No 304
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.54 E-value=0.16 Score=51.86 Aligned_cols=51 Identities=18% Similarity=0.222 Sum_probs=37.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
-.++.|.|.+|+||||||..++...... =..++|++. .-+..++...++..
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~--g~~Vl~fSl--Ems~~ql~~Rlls~ 96 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALND--DRGVAVFSL--EMSAEQLALRALSD 96 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT--TCEEEEEES--SSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeC--CCCHHHHHHHHHHH
Confidence 3589999999999999999999887642 134667655 45667777776554
No 305
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=94.53 E-value=0.092 Score=55.85 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=63.5
Q ss_pred HHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC-hHHHHHHHHHhhCCC----------
Q 004895 172 VIEALK-DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD-AQKIQGELASDLGMN---------- 239 (724)
Q Consensus 172 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~l~~~i~~~l~~~---------- 239 (724)
.++.|. =.+-..++|.|..|+|||+|+..+.+.... .+-+.++++-+.+... ..++.+++...-...
T Consensus 155 vID~l~pigkGqr~gIfgg~GvGKT~L~~~l~~~~a~-~~~~v~V~~~iGER~rEv~e~~~~~~~~~~l~~~~l~~~rtv 233 (498)
T 1fx0_B 155 VVNLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAK-AHGGVSVFGGVGERTREGNDLYMEMKESGVINEQNIAESKVA 233 (498)
T ss_dssp THHHHSCCCTTCCEEEEECSSSSHHHHHHHHHHHTTT-TCSSCEEEEEESCCSHHHHHHHHHHHHTTSSCSSTTCCCCEE
T ss_pred EeeeecccccCCeEEeecCCCCCchHHHHHHHHHHHh-hCCCEEEEEEcccCcHHHHHHHHhhhcccccccccccccceE
Confidence 445444 234457899999999999999999987643 3457788888887653 556667776532111
Q ss_pred -----CCCCch----hHHHHHHHHHHHhc--CCcEEEEEccccc
Q 004895 240 -----FDSNDL----IYHRAKQLCQRLKK--EKRVLIILDNIWT 272 (724)
Q Consensus 240 -----~~~~~~----~~~~~~~l~~~l~~--~kr~LlVlDdv~~ 272 (724)
.+++.. .....-.+.++++. ++.+||++||+-.
T Consensus 234 vV~~t~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR 277 (498)
T 1fx0_B 234 LVYGQMNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFR 277 (498)
T ss_dssp EEEECTTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHH
Confidence 111110 01123344555653 7899999999854
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.53 E-value=0.023 Score=52.16 Aligned_cols=25 Identities=28% Similarity=0.542 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..+|+|+|+.|+||||+++.+....
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.50 E-value=0.024 Score=53.89 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...+++|+|+.|+|||||++.+.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999987653
No 308
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.49 E-value=0.023 Score=53.55 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.|+|.|+.|+||||+++.+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998764
No 309
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.48 E-value=0.027 Score=53.95 Aligned_cols=41 Identities=24% Similarity=0.399 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 166 KKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 166 ~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
++....+...+......+|+|+|.+|+|||||+..+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 15 KRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33444444444445678999999999999999999988764
No 310
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.47 E-value=0.026 Score=52.81 Aligned_cols=26 Identities=42% Similarity=0.479 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
+..+|.|.|+.|+||||+|+.+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998866
No 311
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.44 E-value=0.025 Score=53.42 Aligned_cols=25 Identities=32% Similarity=0.557 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..+++|+|+.|+|||||++.+....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998764
No 312
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.44 E-value=0.15 Score=51.08 Aligned_cols=88 Identities=17% Similarity=0.222 Sum_probs=47.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChH--HHHHHHHHhhCCCCC---CCchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQ--KIQGELASDLGMNFD---SNDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~l~~~i~~~l~~~~~---~~~~~~~~~~~l~ 254 (724)
...+++|+|.+|+||||++..++....... ..+.++... ..... ..+..+.+..+...- .............
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~--~~v~l~~~d-~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l 173 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAAD-TQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVE 173 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTT--CCEEEEECC-SSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEecCC-cccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHH
Confidence 346899999999999999999998876532 235555443 22221 123344455554321 1111222323333
Q ss_pred HHHhcCCcEEEEEccc
Q 004895 255 QRLKKEKRVLIILDNI 270 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv 270 (724)
..+...+.=++|+|-.
T Consensus 174 ~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 174 EKARLEARDLILVDTA 189 (295)
T ss_dssp HHHHHHTCCEEEEECC
T ss_pred HHHHhCCCCEEEEeCC
Confidence 3332123447788875
No 313
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.44 E-value=0.041 Score=47.76 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=31.4
Q ss_pred EEEcCCcccC--CcccccCCCCCcEEEccCCcCcccchh-hhcCCCCCeEccCCC
Q 004895 602 TLCLDGWRLE--DIAIVGQLKKLEILSLRGAEIKQLPLQ-IGQLTRLQLLDLSNC 653 (724)
Q Consensus 602 ~L~L~~~~l~--~~~~~~~l~~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~~ 653 (724)
.++-+++.++ .++. +-..+|++|+|++|.|+.+|.+ +..+++|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5566666665 4221 1223577777777777777665 566777777777764
No 314
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.43 E-value=0.037 Score=55.44 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
...+|.|.|++|+||||+|+.+....
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998764
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.42 E-value=0.021 Score=54.01 Aligned_cols=26 Identities=38% Similarity=0.741 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
...+|.|+|+.|+||||+++.+....
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34689999999999999999998865
No 316
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.41 E-value=0.058 Score=50.29 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=46.2
Q ss_pred hhcCCCCceEEEcCCC-cCC-----CCCccccCCCCCcEEEcCCcccCCc------ccccCCCCCcEEEccCCcCcc---
Q 004895 570 FFEGTEELKVLDFTGI-RFS-----PLPSSLGRLINLQTLCLDGWRLEDI------AIVGQLKKLEILSLRGAEIKQ--- 634 (724)
Q Consensus 570 ~~~~l~~L~~L~l~~~-~~~-----~lp~~i~~l~~L~~L~L~~~~l~~~------~~~~~l~~L~~L~l~~~~i~~--- 634 (724)
.+.+-+.|+.|+|+++ .+. .+-..+..-.+|+.|+|++|.+.+. ..+..=..|++|+|++|.|..
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445566777777764 554 1233444556677777777776541 233344556777777766652
Q ss_pred --cchhhhcCCCCCeEccCC
Q 004895 635 --LPLQIGQLTRLQLLDLSN 652 (724)
Q Consensus 635 --lp~~i~~l~~L~~L~l~~ 652 (724)
+-..+..-+.|++|+|++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHHhhCCceeEEECCC
Confidence 222334445566666654
No 317
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.40 E-value=0.028 Score=53.59 Aligned_cols=28 Identities=29% Similarity=0.363 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+.++|.|.|++|+||||.|+.+++.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3567999999999999999999998774
No 318
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.38 E-value=0.024 Score=61.35 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 161 IFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.++|+++.++.+...+..+. -|.|+|++|+|||+||+.+++...
T Consensus 23 ~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHh
Confidence 46788888888877765433 678999999999999999988653
No 319
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.35 E-value=0.021 Score=53.02 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+|.|+|++|+||||+|+.+.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3689999999999999999988764
No 320
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.35 E-value=0.029 Score=52.08 Aligned_cols=25 Identities=36% Similarity=0.414 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
....|.|+|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999876
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.35 E-value=0.027 Score=52.63 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..+|.|.|+.|+||||+|+.+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998765
No 322
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=94.34 E-value=0.22 Score=49.93 Aligned_cols=88 Identities=24% Similarity=0.265 Sum_probs=49.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC-CChHHHHHHHHHhhCCCCCC---CchhHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN-PDAQKIQGELASDLGMNFDS---NDLIYHRAKQLCQR 256 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~l~~~ 256 (724)
..+++++|.+|+||||++..++....... ..+.++...-. +...+.++...+..+.+.-. ............+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g--~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKG--FKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTT--CCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 56899999999999999999998876532 23556654322 22223344455555543211 11122333344444
Q ss_pred HhcCCcEEEEEccc
Q 004895 257 LKKEKRVLIILDNI 270 (724)
Q Consensus 257 l~~~kr~LlVlDdv 270 (724)
+....-=++|+|-.
T Consensus 176 ~~~~~~D~ViIDTp 189 (297)
T 1j8m_F 176 FLSEKMEIIIVDTA 189 (297)
T ss_dssp HHHTTCSEEEEECC
T ss_pred HHhCCCCEEEEeCC
Confidence 43222237777865
No 323
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.34 E-value=0.028 Score=51.91 Aligned_cols=25 Identities=48% Similarity=0.616 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.++|+|+.|+|||||++.++.....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5889999999999999999988753
No 324
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.29 E-value=0.025 Score=52.74 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAK 203 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (724)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999975
No 325
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.28 E-value=0.026 Score=54.26 Aligned_cols=25 Identities=36% Similarity=0.550 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+|+|+|+.|+||||+|+.+.....
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988653
No 326
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.26 E-value=0.19 Score=50.55 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=48.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChH--HHHHHHHHhhCCCC----CCCchhHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQ--KIQGELASDLGMNF----DSNDLIYHRAKQL 253 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~l~~~i~~~l~~~~----~~~~~~~~~~~~l 253 (724)
...++.|+|++|+||||++..++....... ..+.++.. +.+... +-+...++..+... ............+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g--~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEG--KSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTT--CCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcC--CEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 456999999999999999999998876531 23555544 233322 22334455554332 1111011112233
Q ss_pred HHHHhcCCcEEEEEcccc
Q 004895 254 CQRLKKEKRVLIILDNIW 271 (724)
Q Consensus 254 ~~~l~~~kr~LlVlDdv~ 271 (724)
...+.. +.-++|+|-.-
T Consensus 180 ~~a~~~-~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALAR-NKDVVIIDTAG 196 (306)
T ss_dssp HHHHHT-TCSEEEEEECC
T ss_pred HHHHhc-CCCEEEEECCC
Confidence 333433 34478888653
No 327
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.26 E-value=0.029 Score=53.03 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..+++|+|+.|+||||+++.+....
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999998755
No 328
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.25 E-value=0.043 Score=57.47 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
...+.++|++|+|||++|+.+++..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999876
No 329
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.24 E-value=0.38 Score=51.87 Aligned_cols=38 Identities=29% Similarity=0.353 Sum_probs=27.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI 219 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 219 (724)
...+|+|+|.+|+||||++..++.....+ .. .+..|+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~-G~-kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK-GW-KTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT-TC-CEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC-CC-eEEEEec
Confidence 45699999999999999999999887643 22 2444544
No 330
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.23 E-value=0.031 Score=53.11 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...+|+|+|+.|+|||||++.+.....
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 446899999999999999999988764
No 331
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.23 E-value=0.022 Score=53.03 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
++++|+|+.|+|||||++.+.....
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998765
No 332
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.21 E-value=0.032 Score=52.65 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
...+|+|.|+.|+||||+|+.+.+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998764
No 333
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.21 E-value=0.072 Score=51.90 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=32.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGEL 232 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i 232 (724)
-.++.|.|.+|+|||+||.+++.....+. -..++|++.. .+..++...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E--~~~~~~~~~~ 78 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEY-GEPGVFVTLE--ERARDLRREM 78 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHH-CCCEEEEESS--SCHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCceeeccc--CCHHHHHHHH
Confidence 45899999999999999999776532221 2346666654 3455555444
No 334
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.21 E-value=0.031 Score=54.69 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=23.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+..+|+|+|+.|+|||||++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356999999999999999999997763
No 335
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.20 E-value=0.075 Score=46.05 Aligned_cols=53 Identities=19% Similarity=0.354 Sum_probs=34.7
Q ss_pred EEEcCCCcCC--CCCccccCCCCCcEEEcCCcccCCc--ccccCCCCCcEEEccCCcCc
Q 004895 579 VLDFTGIRFS--PLPSSLGRLINLQTLCLDGWRLEDI--AIVGQLKKLEILSLRGAEIK 633 (724)
Q Consensus 579 ~L~l~~~~~~--~lp~~i~~l~~L~~L~L~~~~l~~~--~~~~~l~~L~~L~l~~~~i~ 633 (724)
+++.++++++ .+|..+. .+|++|+|++|.|+.+ ..+..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 6665432 3577777777777763 34667777777777777543
No 336
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.18 E-value=0.03 Score=51.95 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..|.|.|+.|+||||+|+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998765
No 337
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.17 E-value=0.026 Score=51.65 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+|.|.|+.|+||||+|+.+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999988764
No 338
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.16 E-value=0.029 Score=52.78 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
.+..+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45678999999999999999999874
No 339
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.16 E-value=0.029 Score=52.60 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
..+|+|.|+.|+||||+|+.+.+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998763
No 340
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.12 E-value=0.036 Score=52.19 Aligned_cols=26 Identities=23% Similarity=0.226 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
..+|.|+|+.|+||||+|+.+.+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988763
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.11 E-value=0.033 Score=52.82 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.+|.|.|+.|+||||+|+.+.+....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 57999999999999999999998754
No 342
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.04 E-value=0.021 Score=59.00 Aligned_cols=111 Identities=12% Similarity=0.074 Sum_probs=59.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChH--HHHHHHHHhhCCCCCCCchhHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQ--KIQGELASDLGMNFDSNDLIYHRAKQLCQRL 257 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l 257 (724)
...+++|+|+.|+|||||.+.+....... ....+ +++.+..... .. ..++.+....... ......+...|
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~--~~~~i-~t~ed~~e~~~~~~-~~~v~q~~~~~~~----~~~~~~La~aL 193 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT--KYHHI-LTIEDPIEFVHESK-KCLVNQREVHRDT----LGFSEALRSAL 193 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH--CCCEE-EEEESSCCSCCCCS-SSEEEEEEBTTTB----SCHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC--CCcEE-EEccCcHHhhhhcc-ccceeeeeecccc----CCHHHHHHHHh
Confidence 44599999999999999999998876542 11222 2333221110 00 0000000000011 11233566666
Q ss_pred hcCCcEEEEEccccccccccccccccCCCCcCCCCCCCCCcEEEEEecccchh
Q 004895 258 KKEKRVLIILDNIWTKLELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDLL 310 (724)
Q Consensus 258 ~~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v~ 310 (724)
.. .+=+|++|+.-+.+.++.+... ...|..|++|+-..+.+
T Consensus 194 ~~-~PdvillDEp~d~e~~~~~~~~-----------~~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 194 RE-DPDIILVGEMRDLETIRLALTA-----------AETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TS-CCSEEEESCCCSHHHHHHHHHH-----------HHTTCEEEEEESCSSHH
T ss_pred hh-CcCEEecCCCCCHHHHHHHHHH-----------HhcCCEEEEEEccChHH
Confidence 64 6778899999765554433221 22355688888877653
No 343
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.04 E-value=0.028 Score=52.95 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.++++|+|+.|+|||||++.+.....
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999988653
No 344
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.04 E-value=0.029 Score=53.01 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAK 203 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (724)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999987
No 345
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.03 E-value=0.065 Score=52.20 Aligned_cols=27 Identities=22% Similarity=0.103 Sum_probs=23.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
....+|.|.|++|+||||+|+.+.+..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 356689999999999999999998766
No 346
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.02 E-value=0.033 Score=55.02 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=23.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
..+|.|+|++|+||||+|+.+.....
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
No 347
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.02 E-value=0.088 Score=48.83 Aligned_cols=115 Identities=19% Similarity=0.178 Sum_probs=60.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec---CCChHHHHHHHHHhhC-------C--CCCCCchh--
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK---NPDAQKIQGELASDLG-------M--NFDSNDLI-- 246 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~l~~~i~~~l~-------~--~~~~~~~~-- 246 (724)
...|.|++..|.||||.|--.+-+.... .+ .+.++..-+ ..+..+ +++.++ . .+......
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~-G~-rV~~vQF~Kg~~~~gE~~----~l~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGH-GK-NVGVVQFIKGTWPNGERN----LLEPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHT-TC-CEEEEESSCCSSCCHHHH----HHGGGTCEEEECCTTCCCCGGGHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHC-CC-eEEEEEeeCCCCCccHHH----HHHhCCcEEEEcccccccCCCCcHHH
Confidence 3466677777799999999998887643 22 344554332 222333 344442 1 11111101
Q ss_pred ----HHHHHHHHHHHhcCCcEEEEEcccccccc-----ccccccccCCCCcCCCCCCCCCcEEEEEecccch
Q 004895 247 ----YHRAKQLCQRLKKEKRVLIILDNIWTKLE-----LDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRDL 309 (724)
Q Consensus 247 ----~~~~~~l~~~l~~~kr~LlVlDdv~~~~~-----~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~v 309 (724)
........+.+..++-=|||||++-.... .+.+...+.. ......||+|+|...-
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~--------Rp~~~~vIlTGr~ap~ 165 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNA--------RPGHQTVIITGRGCHR 165 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHT--------SCTTCEEEEECSSCCH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHh--------CcCCCEEEEECCCCcH
Confidence 11223344444444555999999954322 2222222222 3456679999999753
No 348
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.01 E-value=0.051 Score=55.09 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHhc-C---CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 163 NSRKKIFQDVIEALK-D---DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 163 ~gR~~~~~~l~~~L~-~---~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+|....+..+...+. . ....+|+|.|+.|+||||||+.+.....
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344444444443333 2 2355999999999999999999987764
No 349
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.00 E-value=0.036 Score=51.82 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
..++++|+|+.|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456899999999999999999987653
No 350
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.96 E-value=0.36 Score=49.62 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=35.2
Q ss_pred HHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCe-EEEEEEecC
Q 004895 171 DVIEALKD-DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDK-VVMAEITKN 222 (724)
Q Consensus 171 ~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~vs~~ 222 (724)
+.++.+.. .+-..++|+|.+|+|||+|+..+.+....+ +-+. ++++-+.+.
T Consensus 164 raID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~-~~dv~~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANGIAEN-HPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHHHHH-CTTSEEEEEECSCC
T ss_pred hhhhhcccccCCceEEEecCCCCChhHHHHHHHHHHhhc-CCCeEEEEEEeccC
Confidence 45566552 445688999999999999999999876542 2232 345666544
No 351
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.96 E-value=0.029 Score=52.05 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+.|.|+||.|+|||||++.+.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999987653
No 352
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.94 E-value=0.036 Score=50.35 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.|.|.|+.|+||||+|+.+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999988764
No 353
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.94 E-value=0.044 Score=55.31 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=25.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
+..+++|+|++|+||||+++.++.....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 4569999999999999999999988765
No 354
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.92 E-value=0.035 Score=51.74 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
..+|+|.|+.|+||||+|+.+.+...
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988653
No 355
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.88 E-value=0.027 Score=51.61 Aligned_cols=22 Identities=32% Similarity=0.592 Sum_probs=19.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQI 201 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v 201 (724)
.-.+++|+|+.|+|||||++.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 3468999999999999999964
No 356
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.86 E-value=0.025 Score=52.27 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=18.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
..+|.|.|+.|+||||+|+.+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999987653
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.86 E-value=0.04 Score=52.77 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...|.|.|+.|+||||+|+.+++...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45799999999999999999988763
No 358
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.86 E-value=0.038 Score=51.54 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
+|+|.|+.|+||||+|+.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999997753
No 359
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.85 E-value=0.043 Score=55.66 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=32.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK 221 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 221 (724)
++.+||+|.|-||+||||.+..++.-..... ..+.-|++..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~~G--kkVllID~Dp 86 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDP 86 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESS
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHHCC--CeEEEEecCC
Confidence 4678999999999999999999998886532 2366677653
No 360
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.79 E-value=0.7 Score=49.38 Aligned_cols=42 Identities=31% Similarity=0.392 Sum_probs=30.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~ 224 (724)
...+++|+|+.|+|||||++.++...... .+.+++...+.+.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTC
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccc
Confidence 35699999999999999999999887643 3344554334443
No 361
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.79 E-value=0.036 Score=52.46 Aligned_cols=25 Identities=48% Similarity=0.706 Sum_probs=21.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999998764
No 362
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.78 E-value=0.073 Score=53.91 Aligned_cols=42 Identities=24% Similarity=0.256 Sum_probs=29.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEe
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEIT 220 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs 220 (724)
....+|+|+|+.|+|||||++.+..-......-..+.++.-.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd 129 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTD 129 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecC
Confidence 345699999999999999999999877542111235555543
No 363
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=93.77 E-value=0.058 Score=50.34 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=27.7
Q ss_pred HHHHHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 169 FQDVIEALKD-DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 169 ~~~l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+..+..++.. ++...+.|+|++|+||||+|..+++...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444432 2234799999999999999999998764
No 364
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.77 E-value=0.043 Score=52.05 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=26.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCe
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDK 213 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 213 (724)
..+|+|.|+.|+||||+|+.+.+.... .+++.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~-~~~~~ 41 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN-NNVEV 41 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 458999999999999999999998764 34554
No 365
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.76 E-value=0.047 Score=53.59 Aligned_cols=27 Identities=30% Similarity=0.320 Sum_probs=23.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...+|.|+|++|+||||+|+.+.....
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356899999999999999999987653
No 366
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.76 E-value=0.045 Score=52.01 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=26.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCe
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDK 213 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 213 (724)
..+|+|.|+.|+||||+|+.+.+.... .+++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~-~~~~v 40 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA-AGHRA 40 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-cCCcE
Confidence 468999999999999999999998764 34444
No 367
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.73 E-value=0.22 Score=53.28 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=37.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
-.++.|.|.+|+||||||..++....... =..++|++.. -+..++...++..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~ 251 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCS 251 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHH
Confidence 45899999999999999999998875421 1347777654 4566777666543
No 368
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.73 E-value=0.038 Score=52.87 Aligned_cols=111 Identities=12% Similarity=0.069 Sum_probs=60.5
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCCCchhHHHHHHHHHHHhc
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDSNDLIYHRAKQLCQRLKK 259 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~ 259 (724)
.-.++.|+|..|+||||++..+.++..... ..++.+...... . -...+++.++........ .....+.+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~~d~--r-~~~~i~srlG~~~~~~~~--~~~~~i~~~i~~ 83 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPKIDT--R-SIRNIQSRTGTSLPSVEV--ESAPEILNYIMS 83 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEECCCG--G-GCSSCCCCCCCSSCCEEE--SSTHHHHHHHHS
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEeccCc--h-HHHHHHHhcCCCcccccc--CCHHHHHHHHHH
Confidence 446889999999999999999998886532 234444433221 1 112445555544322110 011223333332
Q ss_pred ----CCcEEEEEcccccc--ccccccccccCCCCcCCCCCCCCCcEEEEEecccc
Q 004895 260 ----EKRVLIILDNIWTK--LELDKIGIPYGDVDEKDKNDDPRRCTIILTSRSRD 308 (724)
Q Consensus 260 ----~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~~~~~~~~~~s~ilvTtR~~~ 308 (724)
++.-+||+|.+... +.++.+. .+ ...+..||+|-+..+
T Consensus 84 ~~~~~~~dvViIDEaQ~l~~~~ve~l~-~L----------~~~gi~Vil~Gl~~d 127 (223)
T 2b8t_A 84 NSFNDETKVIGIDEVQFFDDRICEVAN-IL----------AENGFVVIISGLDKN 127 (223)
T ss_dssp TTSCTTCCEEEECSGGGSCTHHHHHHH-HH----------HHTTCEEEEECCSBC
T ss_pred HhhCCCCCEEEEecCccCcHHHHHHHH-HH----------HhCCCeEEEEecccc
Confidence 33459999999643 1222221 11 113677888888654
No 369
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.72 E-value=0.037 Score=50.63 Aligned_cols=27 Identities=30% Similarity=0.482 Sum_probs=24.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
++++|+|..|+|||||++.+.......
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 589999999999999999999887654
No 370
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.70 E-value=0.036 Score=52.57 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.-.+++|+|+.|+|||||++.+..-..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 345899999999999999999987653
No 371
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.66 E-value=0.042 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998876
No 372
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.64 E-value=0.34 Score=51.00 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=36.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHH--HHHHHHHhhCCC
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQK--IQGELASDLGMN 239 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~--l~~~i~~~l~~~ 239 (724)
...++.|+|++|+||||++..++....... ..+..+.. +.+.... .+....+..+.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~-D~~r~aa~~qL~~~~~~~gv~ 155 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAA-DTQRPAAREQLRLLGEKVGVP 155 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEEC-CSSCHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeec-cccCchhHHHHHHhcccCCcc
Confidence 356899999999999999999999886532 23455544 3333322 234444555543
No 373
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.64 E-value=0.036 Score=52.38 Aligned_cols=22 Identities=36% Similarity=0.558 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAK 203 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (724)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999975
No 374
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.63 E-value=0.045 Score=51.14 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
....+|+|+|+.|+||||+|+.+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhc
Confidence 356799999999999999999998763
No 375
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.63 E-value=0.043 Score=53.88 Aligned_cols=27 Identities=37% Similarity=0.466 Sum_probs=23.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...+|+|+|+.|+||||+++.+.+...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 446999999999999999999997763
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.61 E-value=0.04 Score=52.84 Aligned_cols=26 Identities=19% Similarity=0.149 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...|.|.|+.|+||||+|+.+++...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998764
No 377
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.61 E-value=0.025 Score=53.77 Aligned_cols=25 Identities=32% Similarity=0.609 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
+|+|.|+.|+||||+|+.+......
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999999988754
No 378
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.56 E-value=0.042 Score=53.90 Aligned_cols=28 Identities=25% Similarity=0.386 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
....+|+|.|+.|+||||+|+.+.....
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3556899999999999999999988654
No 379
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.56 E-value=0.042 Score=52.88 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
...|.|.|+.|+||||+|+.+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 380
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.53 E-value=0.045 Score=53.40 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.6
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
....+|+|.|+.|+|||||++.+....
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 345699999999999999999998865
No 381
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.48 E-value=0.048 Score=51.01 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.|+|.|+.|+||||+++.+.+....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999998754
No 382
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.46 E-value=0.046 Score=49.23 Aligned_cols=27 Identities=30% Similarity=0.431 Sum_probs=24.0
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..-.+++|+|+.|.|||||++.++.-.
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445699999999999999999999876
No 383
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.41 E-value=0.04 Score=52.71 Aligned_cols=26 Identities=35% Similarity=0.712 Sum_probs=22.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.+....
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34589999999999999999998755
No 384
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.34 E-value=0.31 Score=52.25 Aligned_cols=50 Identities=24% Similarity=0.299 Sum_probs=36.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELA 233 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~ 233 (724)
-.++.|.|.+|+||||||..++....... =..++|++.. .+..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E--~s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLE--MSAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESS--SCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECC--CCHHHHHHHHH
Confidence 45899999999999999999998876431 1247777654 34556666654
No 385
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.32 E-value=0.047 Score=50.85 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+++|+|+.|+|||||++.++....
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998875
No 386
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.28 E-value=0.054 Score=60.59 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=39.8
Q ss_pred CcccccccchHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 156 MKDYNIFNSRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 156 ~~~~~~~~gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++....
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 344567889998888887777654 4789999999999999999998654
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.25 E-value=0.061 Score=51.08 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
....+|.|+|+.|+||||+++.+.....
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456899999999999999999998876
No 388
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.24 E-value=0.051 Score=51.79 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.|+|.|++|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 389
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.24 E-value=0.056 Score=51.12 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+|.|.|++|+||||.|+.+++.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 688999999999999999998764
No 390
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.23 E-value=0.06 Score=57.04 Aligned_cols=46 Identities=26% Similarity=0.265 Sum_probs=35.0
Q ss_pred cccchHHHHHHHHHHhcC--------------CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 161 IFNSRKKIFQDVIEALKD--------------DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 161 ~~~gR~~~~~~l~~~L~~--------------~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.++|.++.++.+..++.. ...+-|.++|++|+||||+|+.++....
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~ 75 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467888877777655521 1345688999999999999999998774
No 391
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.19 E-value=0.055 Score=51.70 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.-.+++|+|+.|+|||||++.+.....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999988654
No 392
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=93.16 E-value=0.45 Score=62.16 Aligned_cols=88 Identities=16% Similarity=0.220 Sum_probs=51.8
Q ss_pred HHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC--CchhHHH
Q 004895 172 VIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS--NDLIYHR 249 (724)
Q Consensus 172 l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~--~~~~~~~ 249 (724)
+++.+...+. -|.++|++|+|||+++..+..... .+ ..+.++.|...+...++..+-..+...... ..
T Consensus 1296 ll~~ll~~~~-pvLL~GptGtGKT~li~~~L~~l~---~~-~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~----- 1365 (3245)
T 3vkg_A 1296 VLHAWLSEHR-PLILCGPPGSGKTMTLTSTLRAFP---DF-EVVSLNFSSATTPELLLKTFDHHCEYKRTPSGET----- 1365 (3245)
T ss_dssp HHHHHHHTTC-CCEEESSTTSSHHHHHHHHGGGCT---TE-EEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCE-----
T ss_pred HHHHHHHCCC-cEEEECCCCCCHHHHHHHHHHhCC---CC-ceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCc-----
Confidence 3444333333 356899999999999877654331 11 256788888888888877775444211110 00
Q ss_pred HHHHHHHHhcCCcEEEEEccccc
Q 004895 250 AKQLCQRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 250 ~~~l~~~l~~~kr~LlVlDdv~~ 272 (724)
+..-...+++.++++||+.-
T Consensus 1366 ---~~~p~~~Gk~~VlFiDDiNm 1385 (3245)
T 3vkg_A 1366 ---VLRPTQLGKWLVVFCDEINL 1385 (3245)
T ss_dssp ---EEEESSTTCEEEEEETTTTC
T ss_pred ---ccCCCcCCceEEEEecccCC
Confidence 00000026789999999953
No 393
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.15 E-value=0.15 Score=49.16 Aligned_cols=36 Identities=22% Similarity=0.446 Sum_probs=28.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEE
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMA 217 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv 217 (724)
...|.|.|+.|+||||+++.+.+.... .++..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeee
Confidence 458999999999999999999998875 345534433
No 394
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=93.14 E-value=0.11 Score=47.67 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=24.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.+++.|+|+.|+|||||+..+......
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 578999999999999999999987654
No 395
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.13 E-value=0.057 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998765
No 396
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.11 E-value=0.058 Score=51.90 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
..+|+|.|++|+||||+|+.+.....
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999988763
No 397
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.09 E-value=0.069 Score=53.81 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=24.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
...+++|+|+.|+||||+++.++.....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3469999999999999999999988764
No 398
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=93.01 E-value=0.13 Score=53.30 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=30.3
Q ss_pred HHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 169 FQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 169 ~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
...+.+.+. ..+..+|+|+|.+|+|||||+..+......
T Consensus 65 ~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~ 105 (355)
T 3p32_A 65 AQQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIE 105 (355)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 344454444 456789999999999999999999887754
No 399
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.98 E-value=0.07 Score=49.11 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
..+|+|+|+.|+||||+++.+......
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 458899999999999999999987654
No 400
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=92.95 E-value=0.15 Score=51.54 Aligned_cols=44 Identities=18% Similarity=0.271 Sum_probs=32.9
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC
Q 004895 178 DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP 223 (724)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~ 223 (724)
....++|+|+|-||+||||+|..++......+ ..++-|+.....
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G--~~VlliD~D~~~ 81 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILG--KRVLQIGCDPKH 81 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEESSSC
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 45678999999999999999999999887532 246777765433
No 401
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.95 E-value=0.17 Score=48.07 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=33.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
..|.|.|+.|+||||+++.+.+..... .+..+.+..-.....+.+.+++++.
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 478999999999999999999988764 4433333322222223444455544
No 402
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.92 E-value=0.059 Score=52.30 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.. .+++|+|+.|+|||||++.++--.
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 45 799999999999999999987543
No 403
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.87 E-value=0.059 Score=51.47 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..|.|.|++|+||||+|+.+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999999876
No 404
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.87 E-value=0.055 Score=52.82 Aligned_cols=26 Identities=35% Similarity=0.362 Sum_probs=23.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
..+|+|+|+.|+||||+++.+.....
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999998764
No 405
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.84 E-value=0.067 Score=50.47 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+|+|.|+.|+||||+|+.+.....
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988764
No 406
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.82 E-value=0.059 Score=54.87 Aligned_cols=25 Identities=32% Similarity=0.388 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+|+|.|+.|+||||||..++....
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4899999999999999999988653
No 407
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.80 E-value=0.42 Score=50.97 Aligned_cols=50 Identities=18% Similarity=0.249 Sum_probs=36.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELAS 234 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~ 234 (724)
-.++.|.|.+|+||||||.+++.....++ ..++|++... +..++...++.
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlEm--s~~ql~~R~~~ 246 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEM--GKKENIKRLIV 246 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSSS--CTTHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECCC--CHHHHHHHHHH
Confidence 45899999999999999999998876531 3477776543 44455555554
No 408
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=92.79 E-value=0.086 Score=55.85 Aligned_cols=101 Identities=19% Similarity=0.176 Sum_probs=60.0
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHHhhccC--CCeEEEEEEecCC-ChHHHHHHHHHhhCC--------C
Q 004895 172 VIEALKD-DKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNV--FDKVVMAEITKNP-DAQKIQGELASDLGM--------N 239 (724)
Q Consensus 172 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~vs~~~-~~~~l~~~i~~~l~~--------~ 239 (724)
.++.|.. .+-..++|.|.+|+|||+|+.+++++....+. =+.++++-+.+.. ...++.+++...=.. .
T Consensus 142 ~ID~l~pigrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~t 221 (469)
T 2c61_A 142 TIDGTNTLVRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNL 221 (469)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEE
T ss_pred eeeeeeccccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEEC
Confidence 4455541 23446788999999999999999988754221 1356777777654 345666666543111 1
Q ss_pred CCCCchh----HHHHHHHHHHHh--cCCcEEEEEccccc
Q 004895 240 FDSNDLI----YHRAKQLCQRLK--KEKRVLIILDNIWT 272 (724)
Q Consensus 240 ~~~~~~~----~~~~~~l~~~l~--~~kr~LlVlDdv~~ 272 (724)
.+++... ....-.+.+++. +++++|+++||+-.
T Consensus 222 sd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR 260 (469)
T 2c61_A 222 ADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDITN 260 (469)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHH
Confidence 1222111 112233455555 48999999999844
No 409
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.77 E-value=0.078 Score=51.22 Aligned_cols=26 Identities=27% Similarity=0.199 Sum_probs=23.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...|.|.|+.|+||||+|+.+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999998764
No 410
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.75 E-value=0.068 Score=50.87 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998866
No 411
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.75 E-value=0.069 Score=51.23 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.|.|.|+.|+||||+|+.+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998876
No 412
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.74 E-value=0.071 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.432 Sum_probs=20.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAK 203 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~ 203 (724)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999975
No 413
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.62 E-value=0.28 Score=61.20 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=56.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC-----CCchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD-----SNDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 254 (724)
.-+++.|+|++|+||||||.+++....... ..++|++.....+.. .++.++.+.+ ......+....+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G--~~vlyis~E~s~~~~-----~a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEECTTSCCCHH-----HHHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCHHHH-----HHHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 446999999999999999999998876432 358888877766643 2566665432 1121333333333
Q ss_pred HHHhcCCcEEEEEccccc
Q 004895 255 QRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~~ 272 (724)
......+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 333345567999999854
No 414
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=92.60 E-value=0.069 Score=53.31 Aligned_cols=23 Identities=26% Similarity=0.732 Sum_probs=21.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIA 202 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~ 202 (724)
...+|+|+|+.|+||||+|+.+.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 415
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.57 E-value=0.2 Score=50.28 Aligned_cols=39 Identities=33% Similarity=0.266 Sum_probs=29.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI 219 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 219 (724)
.-.+++|+|++|+|||||++.++........ ..++|++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G-~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMG-KKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSC-CCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC-CeEEEEeC
Confidence 3458999999999999999999988765311 14666654
No 416
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.55 E-value=0.28 Score=60.43 Aligned_cols=86 Identities=20% Similarity=0.242 Sum_probs=54.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCC-----CCchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFD-----SNDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 254 (724)
.-.++.|.|++|+||||||.+++....... ..++|++....... + +++.++...+ ......+....+.
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g--~~VlyiS~Ees~~q--l---~A~~lGvd~~~L~i~~~~~leei~~~l~ 803 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDP--I---YARKLGVDIDNLLCSQPDTGEQALEICD 803 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEECTTSCCCH--H---HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcC--CCeEEEeccchHHH--H---HHHHcCCChhheEEecCCcHHHHHHHHH
Confidence 346899999999999999999998876432 25788877665543 2 2566664321 1111333344443
Q ss_pred HHHhcCCcEEEEEccccc
Q 004895 255 QRLKKEKRVLIILDNIWT 272 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~~ 272 (724)
......+.-+||+|.+..
T Consensus 804 ~lv~~~~~~lVVIDsLq~ 821 (1706)
T 3cmw_A 804 ALARSGAVDVIVVDSVAA 821 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHccCCCEEEEechhh
Confidence 333345667999999854
No 417
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.52 E-value=0.045 Score=52.88 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=16.5
Q ss_pred ccEEEEEcCCCCcHHHHHHHHH-HHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIA-KQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~-~~~ 205 (724)
-.+++|+|+.|+|||||++.+. ...
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999998 654
No 418
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=92.47 E-value=0.11 Score=54.73 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=58.6
Q ss_pred HHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHHhhc--------cCCC-eEEEEEEecCC-ChHHHHHHHHHh--hC-
Q 004895 172 VIEALK-DDKLNIIGVCGMGGVGKTTLVKQIAKQVMED--------NVFD-KVVMAEITKNP-DAQKIQGELASD--LG- 237 (724)
Q Consensus 172 l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~l~~~i~~~--l~- 237 (724)
.++.|. =.+-..++|.|..|+|||+|+.++++..... .+-+ .++++-+.+.. ...++.+++.+. +.
T Consensus 137 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~r 216 (464)
T 3gqb_B 137 TIDVMNTLVRGQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSR 216 (464)
T ss_dssp HHHTTSCCBTTCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGG
T ss_pred eeecccccccCCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccc
Confidence 444444 1233467899999999999999998876431 1222 46677777654 345555555432 11
Q ss_pred -----CCCCCCchhH----HHHHHHHHHHh--cCCcEEEEEccccc
Q 004895 238 -----MNFDSNDLIY----HRAKQLCQRLK--KEKRVLIILDNIWT 272 (724)
Q Consensus 238 -----~~~~~~~~~~----~~~~~l~~~l~--~~kr~LlVlDdv~~ 272 (724)
...+++.... ...-.+.+++. .++++|+++||+-.
T Consensus 217 tvvv~~t~d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr 262 (464)
T 3gqb_B 217 SVLFLNKADDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTN 262 (464)
T ss_dssp EEEEEEETTSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 0112222111 12234556665 37999999999854
No 419
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.46 E-value=0.093 Score=54.08 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=24.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
...+++|+|+.|+||||+++.++.....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 3469999999999999999999998764
No 420
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.46 E-value=0.18 Score=48.10 Aligned_cols=30 Identities=30% Similarity=0.332 Sum_probs=25.7
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 178 DDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
......|.|.|+.|+||||+++.+.+....
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345668999999999999999999998865
No 421
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.43 E-value=0.075 Score=53.72 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.+|.|+|+.|+||||||+.+++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 489999999999999999998765
No 422
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.41 E-value=0.077 Score=53.78 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.3
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
....+|+|+|+.|+|||||++.+.....
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456999999999999999999988764
No 423
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.41 E-value=0.068 Score=51.75 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.+.--.
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44589999999999999999987544
No 424
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.41 E-value=0.058 Score=51.78 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.++--.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999987543
No 425
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=92.38 E-value=0.11 Score=54.61 Aligned_cols=101 Identities=21% Similarity=0.193 Sum_probs=58.7
Q ss_pred HHHHhcC-CCccEEEEEcCCCCcHHHHHHHHHHHHhhc-cCCC-eEEEEEEecCC-ChHHHHHHHHHh--hC------CC
Q 004895 172 VIEALKD-DKLNIIGVCGMGGVGKTTLVKQIAKQVMED-NVFD-KVVMAEITKNP-DAQKIQGELASD--LG------MN 239 (724)
Q Consensus 172 l~~~L~~-~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~~F~-~~~wv~vs~~~-~~~~l~~~i~~~--l~------~~ 239 (724)
.++.|.. .+-..++|.|..|+|||+|+.++++..... .+-+ .++++-+.+.. ...++.+++.+. +. ..
T Consensus 141 aID~l~pigrGQr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~at 220 (465)
T 3vr4_D 141 AIDHLNTLVRGQKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNL 220 (465)
T ss_dssp HHHTTSCCBTTCBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEE
T ss_pred EEecccccccCCEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEEC
Confidence 4444441 233457899999999999999998876431 1112 46777777654 345566655442 11 01
Q ss_pred CCCCchhH----HHHHHHHHHHh--cCCcEEEEEccccc
Q 004895 240 FDSNDLIY----HRAKQLCQRLK--KEKRVLIILDNIWT 272 (724)
Q Consensus 240 ~~~~~~~~----~~~~~l~~~l~--~~kr~LlVlDdv~~ 272 (724)
.+++.... ...-.+.+++. .++++||++||+-.
T Consensus 221 sd~p~~~r~~a~~~a~tiAEyfrd~~G~~VLl~~DslTr 259 (465)
T 3vr4_D 221 ANDPAIERIATPRMALTAAEYLAYEKGMHVLVIMTDMTN 259 (465)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEECHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHH
Confidence 12221111 11234556665 37999999999954
No 426
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.36 E-value=0.056 Score=51.19 Aligned_cols=24 Identities=38% Similarity=0.267 Sum_probs=21.8
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
-.+++|+|+.|+|||||++.++--
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 348999999999999999999876
No 427
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.29 E-value=0.25 Score=53.14 Aligned_cols=44 Identities=32% Similarity=0.524 Sum_probs=33.8
Q ss_pred chHHHHHHHHHHhcCCCccEEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 164 SRKKIFQDVIEALKDDKLNIIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 164 gR~~~~~~l~~~L~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
+..+.+..+...+.+++ +.+.|.|.+|+||||++..+.......
T Consensus 29 ~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp HHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 45555666666665433 489999999999999999999988654
No 428
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=92.28 E-value=0.1 Score=52.97 Aligned_cols=38 Identities=37% Similarity=0.496 Sum_probs=29.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI 219 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 219 (724)
...+|+|+|++|+||||++..++....... ..+.++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g--~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELG--YKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeC
Confidence 456999999999999999999998876532 23555543
No 429
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.26 E-value=0.085 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.++|.|+|+.|+||||||..++...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3589999999999999999998754
No 430
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.15 E-value=0.1 Score=52.15 Aligned_cols=26 Identities=27% Similarity=0.255 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..++|.|+|+.|+||||||..+++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 34689999999999999999998764
No 431
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.13 E-value=0.11 Score=51.19 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...++.+.|.||+||||++..++....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 356888999999999999999998776
No 432
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.12 E-value=0.055 Score=54.26 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=20.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
+..+|+|.|+.|+||||+|+.+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999988654
No 433
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.11 E-value=0.17 Score=49.77 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=24.7
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
..-.+++|+|+.|+|||||++.+......
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 34569999999999999999999887654
No 434
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.04 E-value=0.16 Score=48.81 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=24.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
....|.|.|+.|+||||+++.+.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 3468999999999999999999998864
No 435
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.03 E-value=0.08 Score=51.31 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=22.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.-.+++|+|+.|+|||||++.++.-..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445899999999999999999976543
No 436
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.01 E-value=0.12 Score=48.12 Aligned_cols=83 Identities=10% Similarity=0.048 Sum_probs=58.2
Q ss_pred hhcCCCCceEEEcCCCcCC-----CCCccccCCCCCcEEEcCCcccCC--c----ccccCCCCCcEEEccCCcC---c--
Q 004895 570 FFEGTEELKVLDFTGIRFS-----PLPSSLGRLINLQTLCLDGWRLED--I----AIVGQLKKLEILSLRGAEI---K-- 633 (724)
Q Consensus 570 ~~~~l~~L~~L~l~~~~~~-----~lp~~i~~l~~L~~L~L~~~~l~~--~----~~~~~l~~L~~L~l~~~~i---~-- 633 (724)
.+..-..|+.|+|++|.+. .+-..+..-..|++|+|++|.|.. . ..+..=..|++|+|++|.. .
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 3556678999999999887 234455566789999999999876 1 4455566799999987533 2
Q ss_pred ---ccchhhhcCCCCCeEccCC
Q 004895 634 ---QLPLQIGQLTRLQLLDLSN 652 (724)
Q Consensus 634 ---~lp~~i~~l~~L~~L~l~~ 652 (724)
.+-..+..-+.|..|+++.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCC
T ss_pred HHHHHHHHHHhCCCcCeEeccC
Confidence 1233445556777777765
No 437
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=91.96 E-value=0.57 Score=50.96 Aligned_cols=52 Identities=23% Similarity=0.136 Sum_probs=37.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASD 235 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~ 235 (724)
-.++.|.|.+|+||||||.+++....... =..++|++... +..++...++..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~-g~~vl~~s~E~--s~~~l~~r~~~~ 293 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIGL 293 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTS-CCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhc-CCcEEEEeccC--CHHHHHHHHHHH
Confidence 45889999999999999999998876431 12477776643 566777766543
No 438
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.93 E-value=0.087 Score=51.53 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
.-.+++|+|+.|+|||||++.++--
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999864
No 439
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.90 E-value=0.073 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.474 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.+.--.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34589999999999999999987543
No 440
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.86 E-value=0.084 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.422 Sum_probs=22.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..+|.|+|+.|+||||||..+++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC
Confidence 4589999999999999999998654
No 441
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.86 E-value=0.084 Score=52.02 Aligned_cols=26 Identities=27% Similarity=0.423 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.++--.
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987543
No 442
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.81 E-value=0.078 Score=51.52 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||.+.++--.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999987543
No 443
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=91.77 E-value=0.096 Score=48.73 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=21.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.|+|+|..|+|||||.+.+....
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3478999999999999999998754
No 444
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.72 E-value=0.068 Score=50.84 Aligned_cols=25 Identities=40% Similarity=0.643 Sum_probs=21.4
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
-.+++|+|+.|+|||||++.++--.
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999986543
No 445
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.72 E-value=0.079 Score=52.30 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.+.--.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34589999999999999999987644
No 446
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.72 E-value=0.081 Score=50.99 Aligned_cols=27 Identities=30% Similarity=0.503 Sum_probs=22.8
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.-.+++|+|+.|+|||||.+.++.-..
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 345899999999999999999976543
No 447
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=91.70 E-value=0.081 Score=52.01 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||.+.++--.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999987544
No 448
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.64 E-value=0.11 Score=51.39 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
.-.+++|+|+.|+|||||++.++--
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999874
No 449
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.64 E-value=0.092 Score=51.69 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.++--.
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44699999999999999999987543
No 450
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.59 E-value=0.084 Score=51.48 Aligned_cols=26 Identities=38% Similarity=0.615 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.++--.
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999987644
No 451
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.53 E-value=0.12 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.321 Sum_probs=23.9
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
..-.+++|+|+.|.|||||++.+..-.
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 445699999999999999999998876
No 452
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.51 E-value=0.1 Score=52.63 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
.+|.|.|++|+||||+|+.+.+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 453
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.45 E-value=0.14 Score=49.54 Aligned_cols=26 Identities=38% Similarity=0.428 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
...+|+|+|+.|+||||+++.+....
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999998765
No 454
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=91.43 E-value=0.31 Score=46.15 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=26.2
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCe
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDK 213 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~ 213 (724)
...|.|.|+.|+||||+++.+.+..... .+..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~-~~~v 37 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEV 37 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT-TCCE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc-CCCc
Confidence 3578999999999999999999988753 3443
No 455
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.43 E-value=0.099 Score=50.88 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.++--.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987543
No 456
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.42 E-value=0.23 Score=47.15 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEec
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITK 221 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~ 221 (724)
.|.+.|.||+||||+|..++.....+ .++ +..+.+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~-G~~-V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ-GVR-VMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT-TCC-EEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC-CCC-EEEEEeCC
Confidence 47789999999999999999988654 333 44455443
No 457
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=91.40 E-value=1 Score=48.54 Aligned_cols=58 Identities=29% Similarity=0.264 Sum_probs=39.8
Q ss_pred HHHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCC-ChHHHHHHH
Q 004895 171 DVIEALK-DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNP-DAQKIQGEL 232 (724)
Q Consensus 171 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~l~~~i 232 (724)
+.++.|. -.+-..++|.|..|+|||+|+.++.+.. +-+.++++-+.+.. ...++++++
T Consensus 221 rvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~~ 280 (600)
T 3vr4_A 221 RVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNEF 280 (600)
T ss_dssp HHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHHT
T ss_pred hhhhccCCccCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 3455554 2345689999999999999999998763 23568888888763 334444443
No 458
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.39 E-value=0.1 Score=51.16 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.++--.
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44599999999999999999987543
No 459
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=91.34 E-value=0.42 Score=58.90 Aligned_cols=85 Identities=19% Similarity=0.200 Sum_probs=60.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCChHHHHHHHHHhhCCCCCC-----CchhHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPDAQKIQGELASDLGMNFDS-----NDLIYHRAKQLC 254 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~~~~l~~~i~~~l~~~~~~-----~~~~~~~~~~l~ 254 (724)
+-++|-|+|+.|+||||||.++....... =..++|++.....+.. .++.+|.+.+. ++..++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~-----~~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHH-----HHHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 34799999999999999999999776433 3458899887777654 37888876432 221334444444
Q ss_pred HHHhcCCcEEEEEcccc
Q 004895 255 QRLKKEKRVLIILDNIW 271 (724)
Q Consensus 255 ~~l~~~kr~LlVlDdv~ 271 (724)
..++.+..-++|+|-|-
T Consensus 1503 ~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp HHHHHTCCSEEEESCST
T ss_pred HHHHcCCCCEEEEccHH
Confidence 55556777899999983
No 460
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.33 E-value=0.1 Score=51.94 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.-.++.|+|++|+|||||+..++....
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 345899999999999999999987554
No 461
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.30 E-value=0.094 Score=51.18 Aligned_cols=26 Identities=31% Similarity=0.489 Sum_probs=22.0
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.++--.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999987544
No 462
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.28 E-value=0.11 Score=51.22 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.+..-.
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44589999999999999999997543
No 463
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.24 E-value=0.11 Score=51.53 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=22.4
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.++--.
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44689999999999999999987654
No 464
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.20 E-value=0.12 Score=48.28 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
-.|+|+|..|+|||||.+.+...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 465
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.18 E-value=0.098 Score=51.22 Aligned_cols=26 Identities=35% Similarity=0.487 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||.+.++.-.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999987654
No 466
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=91.17 E-value=0.69 Score=49.71 Aligned_cols=58 Identities=22% Similarity=0.235 Sum_probs=40.3
Q ss_pred HHHHHhc-CCCccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecCCC-hHHHHHHH
Q 004895 171 DVIEALK-DDKLNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKNPD-AQKIQGEL 232 (724)
Q Consensus 171 ~l~~~L~-~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~l~~~i 232 (724)
+.++.|. -.+-..++|.|..|+|||+|++.+++.. +-+.++++-+.+..+ ..++.+++
T Consensus 216 rvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~----~~~~~V~~~iGER~~Ev~e~~~~~ 275 (588)
T 3mfy_A 216 RVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWS----DAQVVIYIGCGERGNEMTDVLEEF 275 (588)
T ss_dssp HHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHS----SCSEEEEEECCSSSSHHHHHHHHT
T ss_pred chhhccCCcccCCeEEeecCCCCCHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHHH
Confidence 3455554 2344588999999999999999987653 235678888887654 44555554
No 467
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=91.16 E-value=0.13 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
+.|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999864
No 468
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.11 E-value=0.11 Score=51.24 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.1
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.++--.
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 44589999999999999999987543
No 469
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.10 E-value=0.23 Score=48.53 Aligned_cols=37 Identities=27% Similarity=0.262 Sum_probs=28.6
Q ss_pred HHHHHHHhcC--CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 169 FQDVIEALKD--DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 169 ~~~l~~~L~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
...+..|+.. ++...+.++|++|+|||.+|..+++..
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 4456666653 334579999999999999999998854
No 470
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.08 E-value=0.093 Score=55.64 Aligned_cols=28 Identities=18% Similarity=0.392 Sum_probs=23.8
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 178 DDKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.....+|.|+|++|+||||+|+.+....
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456799999999999999999987654
No 471
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.08 E-value=0.25 Score=45.66 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.7
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4458899999999999999998764
No 472
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.06 E-value=0.13 Score=46.49 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAK 203 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (724)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999999975
No 473
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.06 E-value=0.1 Score=51.93 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.2
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.++--.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999987644
No 474
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=91.02 E-value=0.13 Score=53.41 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
.+|+|.|+.|+||||||..++....
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 5889999999999999999998764
No 475
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.92 E-value=0.24 Score=53.45 Aligned_cols=45 Identities=11% Similarity=-0.007 Sum_probs=33.9
Q ss_pred cchHHHHHHHHHHhc--CCCccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 163 NSRKKIFQDVIEALK--DDKLNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 163 ~gR~~~~~~l~~~L~--~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
..|.+..+.+.+... .....+|.+.|+.|+||||+|+.+.+....
T Consensus 375 f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 375 FSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 356666556666542 234568999999999999999999999863
No 476
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=90.89 E-value=0.1 Score=55.44 Aligned_cols=37 Identities=27% Similarity=0.446 Sum_probs=28.1
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEE
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEI 219 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~v 219 (724)
..+|.|+|.+|+||||++..++.....++ . .++.++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G-~-kVllv~~ 135 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRG-L-KPALIAA 135 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHH-C-CEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcC-C-eEEEEec
Confidence 46899999999999999999998876432 2 2445544
No 477
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.79 E-value=0.15 Score=52.98 Aligned_cols=27 Identities=26% Similarity=0.118 Sum_probs=23.5
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
....+++|+|+.|+|||||++.++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 455699999999999999999999754
No 478
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.74 E-value=0.12 Score=47.65 Aligned_cols=21 Identities=43% Similarity=0.624 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAK 203 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~ 203 (724)
-|+|+|.+|+|||||++.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.69 E-value=0.16 Score=49.33 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=22.9
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...|.|.|..|+||||+++.+.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999998763
No 480
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=90.68 E-value=0.1 Score=48.37 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
-..|.|.|+.|+||||||..+....
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999998754
No 481
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.59 E-value=0.14 Score=45.74 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.|.++|.+|+|||||+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998653
No 482
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=90.53 E-value=0.38 Score=49.33 Aligned_cols=46 Identities=30% Similarity=0.421 Sum_probs=33.8
Q ss_pred cCCCccEEEEEcCCCCcHHHHHHHHHHHHh--hccCCCeEEEEEEecCCC
Q 004895 177 KDDKLNIIGVCGMGGVGKTTLVKQIAKQVM--EDNVFDKVVMAEITKNPD 224 (724)
Q Consensus 177 ~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~~F~~~~wv~vs~~~~ 224 (724)
.+...+++.+.|.||+||||+|..++.... .. =..++-|+.....+
T Consensus 14 ~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~--g~~vllid~D~~~~ 61 (348)
T 3io3_A 14 QHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQP--NEQFLLISTDPAHN 61 (348)
T ss_dssp TCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCT--TSCEEEEECCSSCH
T ss_pred cCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcC--CCeEEEEECCCCCC
Confidence 345668999999999999999999998876 32 13466666654433
No 483
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.47 E-value=0.15 Score=50.48 Aligned_cols=25 Identities=40% Similarity=0.557 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.++|+|+.|+|||||.+.++.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999987643
No 484
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.46 E-value=0.2 Score=46.23 Aligned_cols=26 Identities=19% Similarity=0.066 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
.++.|+|+.|+||||++..++.+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~ 29 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKL 29 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47889999999999999877777654
No 485
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.44 E-value=0.15 Score=45.76 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
--|.|+|.+|+|||||+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 486
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.37 E-value=0.13 Score=50.66 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.0
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
-.+++|+|+.|+|||||++.++--
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCC
Confidence 458999999999999999988643
No 487
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=90.27 E-value=0.17 Score=47.59 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=20.9
Q ss_pred CCCccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 178 DDKLNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 178 ~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
..+.-.|+|+|.+|+|||||...+...
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 344457889999999999999988864
No 488
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.26 E-value=0.33 Score=46.45 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=21.3
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVME 207 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (724)
...|.|.|+.|+||||+++.+++....
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999999998865
No 489
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=90.26 E-value=0.19 Score=49.56 Aligned_cols=39 Identities=15% Similarity=0.399 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN 222 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (724)
++|+|.|-||+||||+|..++......+ ..++-|+....
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G--~~VlliD~D~q 40 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMG--KTIMVVGCDPK 40 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTT--CCEEEEEECTT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCC--CcEEEEcCCCC
Confidence 5788899999999999999999887432 24677776543
No 490
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.14 E-value=0.47 Score=44.30 Aligned_cols=26 Identities=27% Similarity=0.471 Sum_probs=23.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHHhhc
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQVMED 208 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~ 208 (724)
.|+|-|.-|+||||.++.+++.....
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~ 27 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKR 27 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 47888999999999999999998764
No 491
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=90.12 E-value=0.2 Score=52.69 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
...+++|+|+.|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999873
No 492
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.02 E-value=0.17 Score=46.75 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Q 004895 183 IIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.|.|+|.+|+|||||+..+....
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57899999999999999998653
No 493
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=89.95 E-value=0.18 Score=46.48 Aligned_cols=23 Identities=26% Similarity=0.422 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 004895 182 NIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
..|+|+|.+|+|||||...+...
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999864
No 494
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.94 E-value=0.18 Score=51.78 Aligned_cols=26 Identities=35% Similarity=0.423 Sum_probs=22.3
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||.+.++--.
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34589999999999999999987644
No 495
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.89 E-value=0.12 Score=49.67 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.9
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQ 204 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (724)
...+|+|.|+.|+||||+++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4469999999999999999998764
No 496
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=89.89 E-value=0.23 Score=49.63 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=30.7
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHhhccCCCeEEEEEEecC
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVMEDNVFDKVVMAEITKN 222 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~vs~~ 222 (724)
.++|+|.|-||+||||+|..++......+ ..++-|+....
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G--~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMG--KKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTT--CCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCC--CeEEEEecCCC
Confidence 36888899999999999999999886532 24666766543
No 497
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.85 E-value=0.2 Score=47.91 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=22.6
Q ss_pred ccEEEEEcCCCCcHHHHHHHHHHHHh
Q 004895 181 LNIIGVCGMGGVGKTTLVKQIAKQVM 206 (724)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~ 206 (724)
...++|.|++|+||||+|+.+.+...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999998774
No 498
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.83 E-value=0.22 Score=47.24 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=22.8
Q ss_pred CCccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 179 DKLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.....|.|+|.+|+|||||+..+....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678999999999999999998754
No 499
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.81 E-value=0.2 Score=44.87 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHH
Q 004895 184 IGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (724)
|+|+|.+|+|||||...+....
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998654
No 500
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.80 E-value=0.16 Score=50.64 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.6
Q ss_pred CccEEEEEcCCCCcHHHHHHHHHHHH
Q 004895 180 KLNIIGVCGMGGVGKTTLVKQIAKQV 205 (724)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (724)
.-.+++|+|+.|+|||||++.++.-.
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44689999999999999999997654
Done!