Your job contains 1 sequence.
>004896
MKEVEKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCR
VSSLKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQS
DANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTT
GWSTFVNQKKLVAGDSIVFLRAQDGDLCVGIRRAKKGIGGGNEYPSSGWNSNNGSCVTGN
PFGGFSCFLREEENKMARNGNMNLNSYGSFNSSGNTRGNGGRVKPEMVLEAVALAASGKP
FEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVA
DPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKLRLPQQ
LDFPFDGQFTMPLFSGNPLGPSSPLCCLSDNTSAGIQGARHAQFGISSSDFHVNNKLQSG
LFLSSLQRFTPNSRDFDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKHQFLLFGQP
IRTEQQISHSCSDDVVSQVLGKSSSDGHSDKVKASSDGSGSTHEQRISIEKSSSSEFFWN
RSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLY
QDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVGRTWITGMRTPKNGLDASNKTGLM
RQAA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004896
(724 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2057517 - symbol:ARF10 "auxin response factor ... 1658 3.1e-214 2
TAIR|locus:2029436 - symbol:ARF17 "auxin response factor ... 562 3.0e-95 2
TAIR|locus:2126460 - symbol:ARF16 "auxin response factor ... 901 2.5e-90 1
TAIR|locus:2152642 - symbol:ARF8 "auxin response factor 8... 504 7.9e-77 3
TAIR|locus:2202205 - symbol:ARF19 "auxin response factor ... 510 2.3e-76 3
TAIR|locus:2204237 - symbol:ARF6 "auxin response factor 6... 490 9.0e-72 3
TAIR|locus:2039124 - symbol:ARF11 "auxin response factor ... 464 3.3e-71 3
TAIR|locus:2076765 - symbol:ARF18 "auxin response factor ... 460 2.9e-70 3
TAIR|locus:2175098 - symbol:ARF4 "auxin response factor 4... 485 3.7e-68 3
TAIR|locus:2035454 - symbol:MP "MONOPTEROS" species:3702 ... 465 3.6e-67 3
TAIR|locus:2057609 - symbol:ETT "ETTIN" species:3702 "Ara... 501 7.3e-67 3
TAIR|locus:2138096 - symbol:ARF9 "auxin response factor 9... 460 1.2e-66 3
TAIR|locus:2174013 - symbol:ARF2 "auxin response factor 2... 463 2.2e-64 3
TAIR|locus:2025991 - symbol:ARF1 "auxin response factor 1... 442 3.8e-64 3
TAIR|locus:2009298 - symbol:ARF21 "auxin response factor ... 368 2.9e-50 3
TAIR|locus:2026145 - symbol:ARF12 "auxin response factor ... 374 1.6e-48 3
TAIR|locus:2206717 - symbol:ARF20 "auxin response factor ... 353 2.6e-48 3
TAIR|locus:2036288 - symbol:ARF22 "auxin response factor ... 362 7.1e-47 3
TAIR|locus:2014731 - symbol:ARF14 "auxin response factor ... 373 2.6e-45 3
TAIR|locus:2008991 - symbol:ARF13 "AUXIN RESPONSE FACTOR ... 340 2.8e-41 4
TAIR|locus:2037169 - symbol:ARF23 "auxin response factor ... 317 1.4e-27 1
TAIR|locus:2085969 - symbol:EDF3 "ethylene response DNA b... 167 2.2e-09 1
TAIR|locus:2039165 - symbol:ABS2 "ABNORMAL SHOOT 2" speci... 158 5.5e-09 1
TAIR|locus:2205319 - symbol:RAV1 "related to ABI3/VP1 1" ... 161 1.1e-08 1
TAIR|locus:2117007 - symbol:NGA4 "NGATHA4" species:3702 "... 156 3.7e-08 1
TAIR|locus:2200950 - symbol:NGA3 "NGATHA3" species:3702 "... 156 4.5e-08 1
TAIR|locus:2041404 - symbol:NGA1 "NGATHA1" species:3702 "... 153 6.6e-08 1
TAIR|locus:2012438 - symbol:RAV2 "related to ABI3/VP1 2" ... 148 3.4e-07 1
TAIR|locus:2031185 - symbol:TEM1 "TEMPRANILLO 1" species:... 148 3.6e-07 1
UNIPROTKB|Q5VRR0 - symbol:IAA20 "Auxin-responsive protein... 132 4.6e-07 1
TAIR|locus:2079537 - symbol:NGA2 "NGATHA2" species:3702 "... 145 4.8e-07 1
TAIR|locus:2090527 - symbol:IAA31 "indole-3-acetic acid i... 125 6.5e-07 1
TAIR|locus:2080782 - symbol:AT3G11580 species:3702 "Arabi... 127 3.7e-05 1
TAIR|locus:2164215 - symbol:DPA4 "DEVELOPMENT-RELATED PcG... 127 4.3e-05 1
TAIR|locus:2064417 - symbol:HSI2 "high-level expression o... 133 5.5e-05 1
TAIR|locus:2041324 - symbol:IAA20 "indole-3-acetic acid i... 110 0.00031 2
DICTYBASE|DDB_G0285837 - symbol:DDB_G0285837 "BRWD group ... 134 0.00069 2
UNIPROTKB|Q6K846 - symbol:IAA9 "Auxin-responsive protein ... 108 0.00094 2
>TAIR|locus:2057517 [details] [associations]
symbol:ARF10 "auxin response factor 10" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;ISS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0048829 "root cap
development" evidence=IGI;IMP] [GO:0051301 "cell division"
evidence=IGI] [GO:0009734 "auxin mediated signaling pathway"
evidence=IMP] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=IMP] [GO:0009743 "response to carbohydrate
stimulus" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] [GO:0031540 "regulation of anthocyanin biosynthetic
process" evidence=IMP] [GO:0048366 "leaf development" evidence=IMP]
[GO:0048441 "petal development" evidence=IMP] [GO:0048442 "sepal
development" evidence=IMP] [GO:0048589 "developmental growth"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009738
GO:GO:0009734 GO:GO:0051301 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0048589 GO:GO:0009743
GO:GO:0048441 GO:GO:0048442 GO:GO:0010154 GO:GO:0035198
GO:GO:0048366 GO:GO:0007389 EMBL:AF099735 EMBL:AC006283
EMBL:AF325073 EMBL:AF336919 EMBL:EU550097 EMBL:EU550098
EMBL:EU550099 EMBL:EU550100 EMBL:EU550101 EMBL:EU550102
EMBL:EU550103 EMBL:EU550104 EMBL:EU550105 EMBL:EU550106
EMBL:EU550107 EMBL:EU550108 EMBL:EU550109 EMBL:EU550110
EMBL:EU550111 EMBL:EU550112 EMBL:EU550113 EMBL:EU550114
EMBL:EU550115 EMBL:EU550116 EMBL:EU550117 EMBL:EU550118
EMBL:EU550119 EMBL:AK228534 IPI:IPI00530405 PIR:G84683
RefSeq:NP_180402.1 UniGene:At.13730 ProteinModelPortal:Q9SKN5
SMR:Q9SKN5 IntAct:Q9SKN5 STRING:Q9SKN5 PRIDE:Q9SKN5
EnsemblPlants:AT2G28350.1 GeneID:817382 KEGG:ath:AT2G28350
GeneFarm:3383 TAIR:At2g28350 eggNOG:NOG315592 InParanoid:Q9SKN5
OMA:ERESGRC PhylomeDB:Q9SKN5 ProtClustDB:CLSN2913131
ArrayExpress:Q9SKN5 Genevestigator:Q9SKN5 GermOnline:AT2G28350
GO:GO:0031540 Uniprot:Q9SKN5
Length = 693
Score = 1658 (588.7 bits), Expect = 3.1e-214, Sum P(2) = 3.1e-214
Identities = 354/570 (62%), Positives = 408/570 (71%)
Query: 3 EVEKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCRVS 62
E EKS+DPQLWHACAGSMVQIP LNSTVFYF QGH EH+ +F + R+PPLI CRV
Sbjct: 2 EQEKSLDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDF-HAPRVPPLILCRVV 60
Query: 63 SLKFLADSETDEVYAKIKLVPIPANEIDFE-DNNLSLNSVGSDSES---EKPASFAKTLT 118
S+KFLAD+ETDEV+AKI L+P+P N++D E D L L SD EKPASFAKTLT
Sbjct: 61 SVKFLADAETDEVFAKITLLPLPGNDLDLENDAVLGLTPPSSDGNGNGKEKPASFAKTLT 120
Query: 119 QSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLL 178
QSDANNGGGFSVPRYCAETIFPRLDY+A+PPVQTV+AKD+HGE WKFRHIYRGTPRRHLL
Sbjct: 121 QSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDIHGETWKFRHIYRGTPRRHLL 180
Query: 179 TTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVXXXXXXXXXXXXNEYPSSGWNSNNGSCVT 238
TTGWSTFVNQKKL+AGDSIVFLR++ GDLCV G SN GS
Sbjct: 181 TTGWSTFVNQKKLIAGDSIVFLRSESGDLCVGIRRAKR----------GGLGSNAGS--- 227
Query: 239 GNPFGGFSCFLREEENKMARNGNMNLNSYXXXXXXXXXXXXXXRVKPEMVLEAVALAASG 298
NP+ GFS FLR++E+ + M + RV+ E V EAVA AA G
Sbjct: 228 DNPYPGFSGFLRDDESTTTTSKLMMMKR---NGNNDGNAAATGRVRVEAVAEAVARAACG 284
Query: 299 KPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQ 358
+ FEVVYYPRASTPEFCVKA+ V++AMR+ W GMRFKMAFETEDSSRISWFMGT+S+VQ
Sbjct: 285 QAFEVVYYPRASTPEFCVKAADVRSAMRIRWCSGMRFKMAFETEDSSRISWFMGTVSAVQ 344
Query: 359 VADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKLRLP 418
VADPI WPNSPWRLLQV WDEPDLLQNVKRVSPWLVELVSNMP IHLSPFSP RKK+R+P
Sbjct: 345 VADPIRWPNSPWRLLQVAWDEPDLLQNVKRVSPWLVELVSNMPTIHLSPFSP-RKKIRIP 403
Query: 419 QQLDFPFDG-QFTM--PLFSGNPLGPSSPLCCLSD---NTSAGIQGARHAQ--FGISS-- 468
Q +FPF G +F + P F+ N G S +C LS+ N AGIQGAR AQ FG S
Sbjct: 404 QPFEFPFHGTKFPIFSPGFANNGGGES--MCYLSNDNNNAPAGIQGARQAQQLFGSPSPS 461
Query: 469 --SDFHV-----NNKLQS-GLFLSSLQRFTPNSRDFDGILTSHTNSSENLSCLLTMGNSN 520
SD ++ NNKL S +FLSS F P + + +S N+SC LTMGN
Sbjct: 462 LLSDLNLSSYTGNNKLHSPAMFLSS---FNPRHHHYQA---RDSENSNNISCSLTMGNPA 515
Query: 521 --QNLEKSE-NIKKHQFLLFGQPIRTEQQI 547
Q+ +KS ++K HQF+LFGQPI TEQQ+
Sbjct: 516 MVQDKKKSVGSVKTHQFVLFGQPILTEQQV 545
Score = 435 (158.2 bits), Expect = 3.1e-214, Sum P(2) = 3.1e-214
Identities = 85/121 (70%), Positives = 101/121 (83%)
Query: 599 WNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIE-RSDMLSH 657
WN S Q GL+TGHCKVF+ESEDVGRTLDLSV+ SY+ELYR+LA MF IE RSD+L+H
Sbjct: 571 WNYSLQ----GLETGHCKVFMESEDVGRTLDLSVIGSYQELYRKLAEMFHIEERSDLLTH 626
Query: 658 VLYQDASGAIKRTGDEPFSDFMKSAKRLTILMGSGSDSVGRTWITGMRTPKNGLDASNKT 717
V+Y+DA+G IKR GDEPFSDFMK+ KRLTI M G D+V +TWITG+RT +NG+DAS KT
Sbjct: 627 VVYRDANGVIKRIGDEPFSDFMKATKRLTIKMDIGGDNVRKTWITGIRTGENGIDASTKT 686
Query: 718 G 718
G
Sbjct: 687 G 687
>TAIR|locus:2029436 [details] [associations]
symbol:ARF17 "auxin response factor 17" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0009653 "anatomical structure morphogenesis"
evidence=IMP] [GO:0009734 "auxin mediated signaling pathway"
evidence=TAS] [GO:0048830 "adventitious root development"
evidence=IMP] [GO:0009555 "pollen development" evidence=IMP]
InterPro:IPR003340 InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0009555
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0048830 GO:GO:0009653
EMBL:AC009243 EMBL:AC012193 EMBL:AY056184 EMBL:BT002749
EMBL:EU550144 EMBL:EU550145 EMBL:EU550146 EMBL:EU550147
EMBL:EU550148 EMBL:EU550149 EMBL:EU550150 EMBL:EU550151
EMBL:EU550152 EMBL:EU550153 EMBL:EU550154 EMBL:EU550155
EMBL:EU550156 EMBL:EU550157 EMBL:EU550158 EMBL:EU550159
EMBL:EU550160 EMBL:EU550161 EMBL:EU550162 EMBL:EU550163
EMBL:EU550164 EMBL:EU550165 EMBL:EU550166 EMBL:EU550167
IPI:IPI00522722 PIR:D96808 RefSeq:NP_565161.1 UniGene:At.26363
ProteinModelPortal:Q84WU6 SMR:Q84WU6 IntAct:Q84WU6 STRING:Q84WU6
PRIDE:Q84WU6 EnsemblPlants:AT1G77850.1 GeneID:844120
KEGG:ath:AT1G77850 GeneFarm:3413 TAIR:At1g77850 eggNOG:NOG325741
OMA:IWRACAG PhylomeDB:Q84WU6 ProtClustDB:CLSN2689276
Genevestigator:Q84WU6 GermOnline:AT1G77850 Uniprot:Q84WU6
Length = 585
Score = 562 (202.9 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
Identities = 107/207 (51%), Positives = 142/207 (68%)
Query: 6 KSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVN-FPSSSRIPPLIFCRVSSL 64
+ +DP +W ACAG+ VQIP L+S V+YFPQGH EH ++ PSS+ P C ++S+
Sbjct: 14 REVDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHCCPLLSTLPSSTSPVP---CIITSI 70
Query: 65 KFLADSETDEVYAKIKLVPIPANEIDFEDNNLSL--NSVGSDSESEKPASFAKTLTQSDA 122
+ LAD TDEV+A + L P+ + F N S G ++ K +FAK LT SDA
Sbjct: 71 QLLADPVTDEVFAHLILQPMTQQQ--FTPTNYSRFGRFDGDVDDNNKVTTFAKILTPSDA 128
Query: 123 NNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGW 182
NNGGGFSVPR+CA+++FP L++ DPPVQ + D+HG +W FRHIYRGTPRRHLLTTGW
Sbjct: 129 NNGGGFSVPRFCADSVFPLLNFQIDPPVQKLYVTDIHGAVWDFRHIYRGTPRRHLLTTGW 188
Query: 183 STFVNQKKLVAGDSIVFLRAQDGDLCV 209
S FVN KKL+AGDS+VF+R ++ +
Sbjct: 189 SKFVNSKKLIAGDSVVFMRKSADEMFI 215
Score = 405 (147.6 bits), Expect = 3.0e-95, Sum P(2) = 3.0e-95
Identities = 111/302 (36%), Positives = 162/302 (53%)
Query: 282 RVKPEMVLEAVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFET 341
++ E V +A+ A+ G PFEVV+YP A EF V+A V+++M ++W G R KMA ET
Sbjct: 265 KLTAEAVTDAINRASQGLPFEVVFYPAAGWSEFVVRAEDVESSMSMYWTPGTRVKMAMET 324
Query: 342 EDSSRISWFMGTISSV-QVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNM 400
EDSSRI+WF G +SS Q P W SPW+ LQ+TWDEP++LQNVKRV+PW VE+ ++
Sbjct: 325 EDSSRITWFQGIVSSTYQETGP--WRGSPWKQLQITWDEPEILQNVKRVNPWQVEIAAHA 382
Query: 401 PVIHLSPFSPARKKLRLPQQLD-FPF--DGQFTMP---LFSGNPLGPSSPLCCLSDNTSA 454
+H +PF PA K+L+ PQ F DG+ P L S PS + S A
Sbjct: 383 TQLH-TPFPPA-KRLKYPQPGGGFLSGDDGEILYPQSGLSSAAAPDPSPSMFSYS-TFPA 439
Query: 455 GIQGARHAQFG-ISSSDFHVNN--KLQSGLFLSSLQ---RFTPNSRDFDGILTSHTNSSE 508
G+QGAR FG + + F N +L + FLS L + + +F + + + +
Sbjct: 440 GMQGARQYDFGSFNPTGFIGGNPPQLFTNNFLSPLPDLGKVSTEMMNFGSPPSDNLSPNS 499
Query: 509 NLSCLLTMGNSNQNLEKSENIKKHQFLLFGQPIRTEQQISHSCSDDVVSQVLG-KSSSDG 567
N + L + GN + K + LFG+ I E+ ++ + + G K SSD
Sbjct: 500 NTTNL-SSGNDLVGNRGPLSKKVNSIQLFGKIITVEEHSESGPAESGLCEEDGSKESSDN 558
Query: 568 HS 569
+
Sbjct: 559 ET 560
>TAIR|locus:2126460 [details] [associations]
symbol:ARF16 "auxin response factor 16" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0035198 "miRNA binding" evidence=ISS] [GO:0007389 "pattern
specification process" evidence=IDA] [GO:0009733 "response to auxin
stimulus" evidence=IEP] [GO:0048829 "root cap development"
evidence=IGI;IMP] [GO:0051301 "cell division" evidence=IGI]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009733 GO:GO:0009734
GO:GO:0051301 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
EMBL:AL161576 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0048829 GO:GO:0035198 GO:GO:0007389
HOGENOM:HOG000241141 eggNOG:NOG315592 EMBL:AL078464 EMBL:AY059792
EMBL:AY091198 EMBL:EU550120 EMBL:EU550121 EMBL:EU550122
EMBL:EU550123 EMBL:EU550124 EMBL:EU550125 EMBL:EU550126
EMBL:EU550127 EMBL:EU550128 EMBL:EU550129 EMBL:EU550130
EMBL:EU550131 EMBL:EU550132 EMBL:EU550133 EMBL:EU550134
EMBL:EU550135 EMBL:EU550136 EMBL:EU550137 EMBL:EU550138
EMBL:EU550139 EMBL:EU550140 EMBL:EU550141 EMBL:EU550142
EMBL:EU550143 IPI:IPI00528149 PIR:T08984 RefSeq:NP_567841.1
UniGene:At.3365 ProteinModelPortal:Q93YR9 SMR:Q93YR9 IntAct:Q93YR9
STRING:Q93YR9 EnsemblPlants:AT4G30080.1 GeneID:829131
KEGG:ath:AT4G30080 GeneFarm:3406 TAIR:At4g30080 InParanoid:Q93YR9
OMA:GHAENAY PhylomeDB:Q93YR9 ProtClustDB:CLSN2917636
Genevestigator:Q93YR9 GermOnline:AT4G30080 Uniprot:Q93YR9
Length = 670
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 215/426 (50%), Positives = 265/426 (62%)
Query: 282 RVKPEMVLEAVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFET 341
+V E V+EA LA SG+PFEVVYYPRAST EFCVKA +AAMR+ W GMRFKMAFET
Sbjct: 270 KVTAESVIEAATLAISGRPFEVVYYPRASTSEFCVKALDARAAMRIPWCSGMRFKMAFET 329
Query: 342 EDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMP 401
EDSSRISWFMGT+S+V V+DPI WPNSPWRLLQV WDEPDLLQNVKRV+PWLVELVSN+
Sbjct: 330 EDSSRISWFMGTVSAVNVSDPIRWPNSPWRLLQVAWDEPDLLQNVKRVNPWLVELVSNVH 389
Query: 402 VIHLSPFSPARKKLRLPQQLDFPFDGQFTMPLFSGNPLGPSSPLCCLSDNTSAGIQGARH 461
I L+ FSP RKK+RLPQ D+ + ++P+ P PS+PL S +S +
Sbjct: 390 PIPLTSFSPPRKKMRLPQHPDYN-NLINSIPV----PSFPSNPLIRSSPLSSV----LDN 440
Query: 462 AQFGISSSDFHVNNKLQSGLFLSSLQRF---------TPNSRDFDGILTSHTNSSENLS- 511
G+ + H N GL S L + P+S L ++N
Sbjct: 441 VPVGLQGAR-H-NAHQYYGLSSSDLHHYYLNRPPPPPPPSSLQLSPSLGLRNIDTKNEKG 498
Query: 512 -CLLTMGNSNQNLEKSENIKKHQFLLFGQPIRTEQQISHSCSDDVVSQVLGKSSSDGHSD 570
C LTMG + N KS KK +LFG+ I E+Q+S S D + + SS G +
Sbjct: 499 FCFLTMGTTPCNDTKS---KKSHIVLFGKLILPEEQLSEKGSTDTANIEKTQISSGGSNQ 555
Query: 571 KVKASSDGSGSTHEQRXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDL 630
A + S S SGL+TGHCKVF+ES+DVGRTLDL
Sbjct: 556 NGVAGREFSSSDEGSPCSKKVHDA-------------SGLETGHCKVFMESDDVGRTLDL 602
Query: 631 SVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMG 690
SVL SYEEL R+L+ MFGI++S+MLS VLY+DASGAIK G+EPFS+F+K+A+RLTIL
Sbjct: 603 SVLGSYEELSRKLSDMFGIKKSEMLSSVLYRDASGAIKYAGNEPFSEFLKTARRLTILTE 662
Query: 691 SGSDSV 696
GS+SV
Sbjct: 663 QGSESV 668
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 214/483 (44%), Positives = 270/483 (55%)
Query: 5 EKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIFCRVSSL 64
EK +DPQLWHACAG MV++PP+NS VFYFPQGHAE++ V+F + IPP++ CRV ++
Sbjct: 13 EKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVDF-GNLPIPPMVLCRVLAI 71
Query: 65 KFLADSETDEVYAKIKLVPIPANE-IDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDAN 123
K++AD+E+DEV+AK++L+P+ +E +D E + +S G +S SEK SFAKTLTQSDAN
Sbjct: 72 KYMADAESDEVFAKLRLIPLKDDEYVDHEYGD-GEDSNGFESNSEKTPSFAKTLTQSDAN 130
Query: 124 NGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWS 183
NGGGFSVPRYCAETIFPRLDY A+PPVQT++AKDVHG++WKFRHIYRGTPRRHLLTTGWS
Sbjct: 131 NGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTPRRHLLTTGWS 190
Query: 184 TFVNQKKLVAGDSIVFLRAQDGDLCVXXXXXXXXXXXXNEYPSSGWNSNNGSCVTGNPFG 243
FVNQKKLVAGDSIVF+RA++GDLCV S+GWN GSC
Sbjct: 191 NFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGGIGNGPEYSAGWNPIGGSC------- 243
Query: 244 GFSCFLREEENKMARNGNMNLNSYXXXXXXXXXXXXXXRVKPEMVLEAVALA-ASGKPFE 302
G+S LRE+E+ R N +L E V AS F
Sbjct: 244 GYSSLLREDESNSLRRSNCSLADRKGKVTAESVIEAATLAISGRPFEVVYYPRASTSEFC 303
Query: 303 V--------VYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTI 354
V + P S F + A + + R+ W G A D R W
Sbjct: 304 VKALDARAAMRIPWCSGMRFKM-AFETEDSSRISWFMGT--VSAVNVSDPIR--WPNSPW 358
Query: 355 SSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPV---IHLSPFSPA 411
+QVA W + P L V P L++ V V P + L S P + L P P
Sbjct: 359 RLLQVA----W-DEPDLLQNVKRVNPWLVELVSNVHP--IPLTSFSPPRKKMRL-PQHPD 410
Query: 412 RKKL--RLPQQLDFPFDGQFTMPLFSGNPLGPSSPLCCLSDNTSAGIQGARHAQFGISSS 469
L +P FP + PL +PL SS L + A H +G+SSS
Sbjct: 411 YNNLINSIPVP-SFPSN-----PLIRSSPL--SSVLDNVPVGLQGARHNA-HQYYGLSSS 461
Query: 470 DFH 472
D H
Sbjct: 462 DLH 464
>TAIR|locus:2152642 [details] [associations]
symbol:ARF8 "auxin response factor 8" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS;TAS]
[GO:0009733 "response to auxin stimulus" evidence=IMP] [GO:0009908
"flower development" evidence=IGI] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009886 "post-embryonic
morphogenesis" evidence=RCA] [GO:0009887 "organ morphogenesis"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009733 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009908 HOGENOM:HOG000241141
ProtClustDB:CLSN2686713 EMBL:AF042196 EMBL:AY669790 EMBL:AB024026
IPI:IPI00525703 IPI:IPI00846789 RefSeq:NP_001078672.1
RefSeq:NP_198518.1 UniGene:At.23446 ProteinModelPortal:Q9FGV1
SMR:Q9FGV1 IntAct:Q9FGV1 STRING:Q9FGV1 PaxDb:Q9FGV1 PRIDE:Q9FGV1
EnsemblPlants:AT5G37020.1 GeneID:833672 KEGG:ath:AT5G37020
GeneFarm:3372 TAIR:At5g37020 eggNOG:NOG292968 InParanoid:Q9FGV1
OMA:NDAYLPA PhylomeDB:Q9FGV1 Genevestigator:Q9FGV1
GermOnline:AT5G37020 Uniprot:Q9FGV1
Length = 811
Score = 504 (182.5 bits), Expect = 7.9e-77, Sum P(3) = 7.9e-77
Identities = 98/212 (46%), Positives = 136/212 (64%)
Query: 3 EVEKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVN------FPSSSRIPPL 56
E EK ++ +LWHACAG +V +P S V YFPQGH+E + N P+ +PP
Sbjct: 14 EGEKCLNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQ 73
Query: 57 IFCRVSSLKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPAS-FAK 115
+ C++ ++ AD ETDEVYA++ L P+ E+ + + S++P++ F K
Sbjct: 74 LICQLHNVTMHADVETDEVYAQMTLQPLTP-----EEQKETFVPIELGIPSKQPSNYFCK 128
Query: 116 TLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRR 175
TLT SD + GGFSVPR AE +FP LDYT PP Q ++A+D+H WKFRHI+RG P+R
Sbjct: 129 TLTASDTSTHGGFSVPRRAAEKVFPPLDYTLQPPAQELIARDLHDVEWKFRHIFRGQPKR 188
Query: 176 HLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDL 207
HLLTTGWS FV+ K+LVAGDS++F+R + L
Sbjct: 189 HLLTTGWSVFVSAKRLVAGDSVIFIRNEKNQL 220
Score = 222 (83.2 bits), Expect = 7.9e-77, Sum P(3) = 7.9e-77
Identities = 53/129 (41%), Positives = 75/129 (58%)
Query: 288 VLEAVALA-ASGKPFEVVYYPRASTPEFCVKASA-VKAAMRVHWLCGMRFKMAFETEDSS 345
+L A A A A+ F V ++PRAS EF ++ S +KA GMRF+M FETE+SS
Sbjct: 248 LLAAAAHASATNSCFTVFFHPRASQSEFVIQLSKYIKAVFHTRISVGMRFRMLFETEESS 307
Query: 346 RISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHL 405
+ +MGTI+ + D + WPNS WR ++V WDE + RVS W +E ++ P+ +
Sbjct: 308 -VRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPM-YP 365
Query: 406 SPFSPARKK 414
S F P R K
Sbjct: 366 SLF-PLRLK 373
Score = 104 (41.7 bits), Expect = 7.9e-77, Sum P(3) = 7.9e-77
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 604 QVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIER--SDMLS---HV 658
Q+ S KV+ +S VGR+LD+S SSY EL L MF IE D L +
Sbjct: 697 QINSSNQTKNFVKVY-KSGSVGRSLDISRFSSYHELREELGKMFAIEGLLEDPLRSGWQL 755
Query: 659 LYQDASGAIKRTGDEPFSDFMKSAKRLTIL 688
++ D I GD+P+ F+ + + IL
Sbjct: 756 VFVDKENDILLLGDDPWESFVNNVWYIKIL 785
>TAIR|locus:2202205 [details] [associations]
symbol:ARF19 "auxin response factor 19" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0009733 "response to auxin stimulus"
evidence=RCA;IMP;NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0048366 "leaf
development" evidence=IGI] [GO:0048527 "lateral root development"
evidence=IGI;RCA] [GO:0009723 "response to ethylene stimulus"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA] [GO:0010311
"lateral root formation" evidence=IGI] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009741 "response to brassinosteroid stimulus"
evidence=RCA] [GO:0010090 "trichome morphogenesis" evidence=RCA]
[GO:0010583 "response to cyclopentenone" evidence=RCA] [GO:0045010
"actin nucleation" evidence=RCA] [GO:0048765 "root hair cell
differentiation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0046983 "protein dimerization activity"
evidence=IDA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0009723 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0046983 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010311 GO:GO:0048366 HOGENOM:HOG000241141
EMBL:U53672 EMBL:AY008390 EMBL:AY669794 EMBL:AC069143 EMBL:AB493467
EMBL:AJ441312 IPI:IPI00534870 PIR:G86325 RefSeq:NP_173356.1
UniGene:At.10488 ProteinModelPortal:Q8RYC8 SMR:Q8RYC8 IntAct:Q8RYC8
STRING:Q8RYC8 EnsemblPlants:AT1G19220.1 GeneID:838505
KEGG:ath:AT1G19220 GeneFarm:3421 TAIR:At1g19220 eggNOG:NOG331338
InParanoid:Q8RYC8 OMA:WEIEPVI PhylomeDB:Q8RYC8
ProtClustDB:CLSN2914206 Genevestigator:Q8RYC8 GermOnline:AT1G19220
Uniprot:Q8RYC8
Length = 1086
Score = 510 (184.6 bits), Expect = 2.3e-76, Sum P(3) = 2.3e-76
Identities = 101/208 (48%), Positives = 133/208 (63%)
Query: 5 EKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVN-----FPSSSRIPPLIFC 59
+K I+ QLWHACAG +V +PP+ S V YFPQGH+E S+ P+ +P + C
Sbjct: 17 KKPINSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDFIPNYPNLPSKLIC 76
Query: 60 RVSSLKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQ 119
+ S+ AD+ETDEVYA++ L P+ N+ D E L + +G + F KTLT
Sbjct: 77 LLHSVTLHADTETDEVYAQMTLQPV--NKYDREA--LLASDMGLKLNRQPTEFFCKTLTA 132
Query: 120 SDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLT 179
SD + GGFSVPR AE IFP LD++ PP Q +VAKD+H W FRHIYRG P+RHLLT
Sbjct: 133 SDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLT 192
Query: 180 TGWSTFVNQKKLVAGDSIVFLRAQDGDL 207
TGWS FV+ K+L AGDS++F+R + L
Sbjct: 193 TGWSVFVSTKRLFAGDSVLFVRDEKSQL 220
Score = 218 (81.8 bits), Expect = 2.3e-76, Sum P(3) = 2.3e-76
Identities = 93/354 (26%), Positives = 148/354 (41%)
Query: 242 FGGFSC-FLREEENKMARNGNMNLNSYXXXXXXXXXXXXXXRVKPEMVLEAVALA-ASGK 299
F G S F+R+E++++ G N + +L A A A A+
Sbjct: 205 FAGDSVLFVRDEKSQLML-GIRRANRQTPTLSSSVISSDSMHIG---ILAAAAHANANSS 260
Query: 300 PFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359
PF + + PRAS EF V + A+ GMRF+M FETED + +MGT++ +
Sbjct: 261 PFTIFFNPRASPSEFVVPLAKYNKALYAQVSLGMRFRMMFETEDCG-VRRYMGTVTGISD 319
Query: 360 ADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPAR--KKLRL 417
DP+ W S WR LQV WDE RVS W +E V I PF + ++ +
Sbjct: 320 LDPVRWKGSQWRNLQVGWDESTAGDRPSRVSIWEIEPVITPFYICPPPFFRPKYPRQPGM 379
Query: 418 PQ-QLDFPFDGQFTMPLFSGNPLG---------PSSPLC-CLSDNTSAGIQGARHAQFGI 466
P +LD + MP + G G P L +S + + G+ Q
Sbjct: 380 PDDELDMENAFKRAMP-WMGEDFGMKDAQSSMFPGLSLVQWMSMQQNNPLSGSATPQLPS 438
Query: 467 SSSDFHVNNKLQSGLFLSSLQRF-TPNSRDFDGILTS-HT--NSSENLSCLLTMGNSNQN 522
+ S F++ N S S L F +PN + +T + S+ + M S Q
Sbjct: 439 ALSSFNLPNNFASN-DPSKLLNFQSPNLSSANSQFNKPNTVNHISQQMQAQPAMVKSQQQ 497
Query: 523 LEKSENIKKHQFLLFGQPIRTEQQISHSCSDDVVSQVLGKSSSDGHSDKVKASS 576
++ + +HQ Q ++ +QQ+ S V Q + + + +++V S
Sbjct: 498 QQQQQQQHQHQ----QQQLQQQQQLQMS-QQQVQQQGIYNNGTIAVANQVSCQS 546
Score = 103 (41.3 bits), Expect = 2.3e-76, Sum P(3) = 2.3e-76
Identities = 26/70 (37%), Positives = 40/70 (57%)
Query: 624 VGRTLDLSVLSSYEELYRRLAIMFGIERS--DMLSH---VLYQDASGAIKRTGDEPFSDF 678
VGR++D++ S Y+EL LA MFGIE D L+ ++Y D I GD+P+ +F
Sbjct: 969 VGRSIDVTRYSGYDELRHDLARMFGIEGQLEDPLTSDWKLVYTDHENDILLVGDDPWEEF 1028
Query: 679 MKSAKRLTIL 688
+ + + IL
Sbjct: 1029 VNCVQNIKIL 1038
Score = 39 (18.8 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 519 SNQNLEKSENIKKHQFLLFGQPIRTEQQIS-HSCS 552
++QN+ N Q F Q ++ +QQ+ H+ S
Sbjct: 571 THQNINSMGNKGLSQMTSFAQEMQFQQQLEMHNSS 605
>TAIR|locus:2204237 [details] [associations]
symbol:ARF6 "auxin response factor 6" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IMP] [GO:0009908 "flower development"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009855 "determination of bilateral symmetry" evidence=RCA]
[GO:0009886 "post-embryonic morphogenesis" evidence=RCA]
[GO:0009887 "organ morphogenesis" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010051 "xylem and phloem
pattern formation" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048507 "meristem
development" evidence=RCA] [GO:0048519 "negative regulation of
biological process" evidence=RCA] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733 GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC025295
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 HOGENOM:HOG000241141 EMBL:AF013467 EMBL:AY669788
EMBL:EU550049 EMBL:EU550050 EMBL:EU550051 EMBL:EU550052
EMBL:EU550053 EMBL:EU550054 EMBL:EU550055 EMBL:EU550056
EMBL:EU550057 EMBL:EU550058 EMBL:EU550059 EMBL:EU550060
EMBL:EU550061 EMBL:EU550062 EMBL:EU550063 EMBL:EU550064
EMBL:EU550065 EMBL:EU550066 EMBL:EU550067 EMBL:EU550068
EMBL:EU550069 EMBL:EU550070 EMBL:EU550071 EMBL:EU550072
IPI:IPI00533211 IPI:IPI00656643 PIR:F86427 RefSeq:NP_001031115.1
RefSeq:NP_174323.1 UniGene:At.21939 ProteinModelPortal:Q9ZTX8
SMR:Q9ZTX8 IntAct:Q9ZTX8 STRING:Q9ZTX8 PaxDb:Q9ZTX8 PRIDE:Q9ZTX8
EnsemblPlants:AT1G30330.2 GeneID:839913 KEGG:ath:AT1G30330
GeneFarm:3369 TAIR:At1g30330 eggNOG:NOG288258 InParanoid:Q9ZTX8
OMA:ANSHWRS PhylomeDB:Q9ZTX8 ProtClustDB:CLSN2686713
Genevestigator:Q9ZTX8 GermOnline:AT1G30330 Uniprot:Q9ZTX8
Length = 935
Score = 490 (177.5 bits), Expect = 9.0e-72, Sum P(3) = 9.0e-72
Identities = 98/203 (48%), Positives = 134/203 (66%)
Query: 5 EKSIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIP------PLIF 58
++ ++ +LWHACAG +V +PP+ S V YFPQGH+E S N + IP P +
Sbjct: 19 KRVLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLI 78
Query: 59 CRVSSLKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPAS-FAKTL 117
C++ ++ AD ETDEVYA++ L P+ A E +D L +G S +P + F KTL
Sbjct: 79 CQLHNVTMHADVETDEVYAQMTLQPLNAQEQ--KDPYLPAE-LGVPSR--QPTNYFCKTL 133
Query: 118 TQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHL 177
T SD + GGFSVPR AE +FP LDY+ PP Q ++A+D+H WKFRHI+RG P+RHL
Sbjct: 134 TASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELMARDLHDNEWKFRHIFRGQPKRHL 193
Query: 178 LTTGWSTFVNQKKLVAGDSIVFL 200
LTTGWS FV+ K+LVAGDS++F+
Sbjct: 194 LTTGWSVFVSAKRLVAGDSVLFI 216
Score = 228 (85.3 bits), Expect = 9.0e-72, Sum P(3) = 9.0e-72
Identities = 62/156 (39%), Positives = 83/156 (53%)
Query: 288 VLEAVA-LAASGKPFEVVYYPRASTPEFCVK-ASAVKAAMRVHWLCGMRFKMAFETEDSS 345
+L A A AA+ F + Y PRAS EF + A VKA GMRF+M FETE+SS
Sbjct: 251 LLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESS 310
Query: 346 RISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHL 405
+ +MGTI+ + DP W NS WR ++V WDE + RVS W +E ++ P+ +
Sbjct: 311 -VRRYMGTITGICDLDPTRWANSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPM-YP 368
Query: 406 SPFSPARKKLRLPQQLDFPFDG--QFTMPLFSGNPL 439
SPF P R K P L F G + M + +PL
Sbjct: 369 SPF-PLRLKRPWPPGLP-SFHGLKEDDMGMSMSSPL 402
Score = 102 (41.0 bits), Expect = 9.0e-72, Sum P(3) = 9.0e-72
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 616 KVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERS--DMLS---HVLYQDASGAIKRT 670
KV+ +S GR+LD+S SSY EL LA MFG+E D + +++ D +
Sbjct: 800 KVY-KSGSFGRSLDISKFSSYHELRSELARMFGLEGQLEDPVRSGWQLVFVDRENDVLLL 858
Query: 671 GDEPFSDFMKSAKRLTILMGSGSDSVGR 698
GD+P+ +F+ S + IL +G+
Sbjct: 859 GDDPWPEFVSSVWCIKILSPQEVQQMGK 886
Score = 59 (25.8 bits), Expect = 4.4e-54, Sum P(3) = 4.4e-54
Identities = 37/118 (31%), Positives = 53/118 (44%)
Query: 398 SNMP--VIHLSPFSPARKKLRLPQQLDFPFDGQFTMPLFSGNPLGPSSPLCC--LSDNTS 453
SN+P + L PF P ++ + Q+ D + LF N + SS L +S+ S
Sbjct: 686 SNVPPNAVSLPPF-PGGRECSIEQE-GSASDPHSHL-LFGVN-IDSSSLLMPNGMSNLRS 741
Query: 454 AGIQGARHAQFGISSSDFHVNNKLQSGLFLSSLQRFTPNSR-DFDGILTSHTN-SSEN 509
GI+G +SS+F NN L ++ TP+S D G L S N SEN
Sbjct: 742 IGIEGGDSTTLPFTSSNF--NNDFSGNLAMT-----TPSSCIDESGFLQSSENLGSEN 792
>TAIR|locus:2039124 [details] [associations]
symbol:ARF11 "auxin response factor 11" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0009506
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC006526 EMBL:AC006418
HOGENOM:HOG000241141 EMBL:AY669791 EMBL:AK229757 EMBL:BX837073
EMBL:AK229924 IPI:IPI00544804 IPI:IPI00547357 IPI:IPI00656718
PIR:A84904 RefSeq:NP_001031548.1 RefSeq:NP_182176.2
RefSeq:NP_973701.1 UniGene:At.36497 ProteinModelPortal:Q9ZPY6
SMR:Q9ZPY6 PRIDE:Q9ZPY6 EnsemblPlants:AT2G46530.3 GeneID:819264
KEGG:ath:AT2G46530 GeneFarm:3388 TAIR:At2g46530 eggNOG:NOG303653
InParanoid:Q9ZPY6 OMA:MFEIEGE PhylomeDB:Q9ZPY6
ProtClustDB:CLSN2681223 ArrayExpress:Q9ZPY6 Genevestigator:Q9ZPY6
Uniprot:Q9ZPY6
Length = 622
Score = 464 (168.4 bits), Expect = 3.3e-71, Sum P(3) = 3.3e-71
Identities = 104/208 (50%), Positives = 125/208 (60%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVN-------FPSSSRIPPLIFCRVSS 63
+LW ACAG +V++P VFYFPQGH E + S N P + +PP I CRV S
Sbjct: 42 ELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVFN-LPPKILCRVLS 100
Query: 64 LKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPA--SFAKTLTQSD 121
+ A+ ETDEVYA+I L P E E +L V E KP SF K LT SD
Sbjct: 101 VTLKAEHETDEVYAQITLQP---EEDQSEPTSLDPPLV----EPAKPTVDSFVKILTASD 153
Query: 122 ANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTG 181
+ GGFSV R A P LD T P Q +VA+D+HG W+F+HI+RG PRRHLLTTG
Sbjct: 154 TSTHGGFSVLRKHATECLPSLDMTQPTPTQELVARDLHGYEWRFKHIFRGQPRRHLLTTG 213
Query: 182 WSTFVNQKKLVAGDSIVFLRAQDGDLCV 209
WSTFV K+LVAGD+ VFLR + GDL V
Sbjct: 214 WSTFVTSKRLVAGDAFVFLRGETGDLRV 241
Score = 178 (67.7 bits), Expect = 3.3e-71, Sum P(3) = 3.3e-71
Identities = 58/175 (33%), Positives = 82/175 (46%)
Query: 226 SSGWNS--NNGSCVTGNPFGGFSCFLREEENKMARNGNMNLNSYXXXXXXXXXXXXXXRV 283
++GW++ + V G+ F FLR E + R G L R+
Sbjct: 211 TTGWSTFVTSKRLVAGDAF----VFLRGETGDL-RVGVRRLAKQQSTMPASVISSQSMRL 265
Query: 284 KPEMVLEAVALAASGKPFEVVYY-PRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETE 342
VL + A + VV+Y PR S +F + + AM+ + GMR++M FE E
Sbjct: 266 G---VLATASHAVTTTTIFVVFYKPRIS--QFIISVNKYMMAMKNGFSLGMRYRMRFEGE 320
Query: 343 DS-SRISWFMGTISSVQVADPIS-WPNSPWRLLQVTWDEPDLLQNVKRVSPWLVE 395
+S RI F GTI + D S WP S WR LQ+ WDEP +Q +VSPW +E
Sbjct: 321 ESPERI--FTGTI--IGSGDLSSQWPASKWRSLQIQWDEPSSIQRPNKVSPWEIE 371
Score = 116 (45.9 bits), Expect = 3.3e-71, Sum P(3) = 3.3e-71
Identities = 29/76 (38%), Positives = 45/76 (59%)
Query: 616 KVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERS----DMLSHVLYQDASGAIKRTG 671
KV ++ VGR +DL++L SY+EL + L MF IE D + +++ D G G
Sbjct: 515 KVQMQGTAVGRAVDLTLLRSYDELIKELEKMFEIEGELSPKDKWA-IVFTDDEGDRMLVG 573
Query: 672 DEPFSDFMKSAKRLTI 687
D+P+++F K AK+L I
Sbjct: 574 DDPWNEFCKMAKKLFI 589
>TAIR|locus:2076765 [details] [associations]
symbol:ARF18 "auxin response factor 18" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AL132959 HOGENOM:HOG000241141 EMBL:AF334717
EMBL:AY059746 EMBL:AY070463 EMBL:AY091392 EMBL:AK229945
IPI:IPI00524053 PIR:T47975 RefSeq:NP_567119.1 UniGene:At.17167
UniGene:At.69165 ProteinModelPortal:Q9C5W9 SMR:Q9C5W9 IntAct:Q9C5W9
EnsemblPlants:AT3G61830.1 GeneID:825356 KEGG:ath:AT3G61830
GeneFarm:3414 TAIR:At3g61830 eggNOG:NOG268528 InParanoid:Q9C5W9
OMA:RISQFIV PhylomeDB:Q9C5W9 ProtClustDB:CLSN2917487
Genevestigator:Q9C5W9 GermOnline:AT3G61830 Uniprot:Q9C5W9
Length = 602
Score = 460 (167.0 bits), Expect = 2.9e-70, Sum P(3) = 2.9e-70
Identities = 99/205 (48%), Positives = 123/205 (60%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSR------IPPLIFCRVSSL 64
+LW CAG +V++P VFYFPQGH E + S N +S +PP I CRV +
Sbjct: 25 ELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRVLDV 84
Query: 65 KFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDANN 124
A+ ETDEVYA+I L P E E +L VG + SF K LT SD +
Sbjct: 85 TLKAEHETDEVYAQITLQP---EEDQSEPTSLDPPIVGPTKQEFH--SFVKILTASDTST 139
Query: 125 GGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWST 184
GGFSV R A P LD T P Q +V +D+HG W+F+HI+RG PRRHLLTTGWST
Sbjct: 140 HGGFSVLRKHATECLPSLDMTQATPTQELVTRDLHGFEWRFKHIFRGQPRRHLLTTGWST 199
Query: 185 FVNQKKLVAGDSIVFLRAQDGDLCV 209
FV+ K+LVAGD+ VFLR ++GDL V
Sbjct: 200 FVSSKRLVAGDAFVFLRGENGDLRV 224
Score = 174 (66.3 bits), Expect = 2.9e-70, Sum P(3) = 2.9e-70
Identities = 65/194 (33%), Positives = 90/194 (46%)
Query: 226 SSGWNS--NNGSCVTGNPFGGFSCFLREEENKMARNGNMNLNSYXXXXXXXXXXXXXXRV 283
++GW++ ++ V G+ F FLR E + R G L + +
Sbjct: 194 TTGWSTFVSSKRLVAGDAF----VFLRGENGDL-RVGVRRLARHQSTMPTSVISSQSMHL 248
Query: 284 KPEMVLEAVALAASGKPFEVVYY-PRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETE 342
VL + A VV+Y PR S +F V + A++ + G RF+M FE E
Sbjct: 249 G---VLATASHAVRTTTIFVVFYKPRIS--QFIVGVNKYMEAIKHGFSLGTRFRMRFEGE 303
Query: 343 DS-SRISWFMGTISSVQVADPIS-WPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNM 400
+S RI F GTI V D S WP S WR LQV WDEP +Q +VSPW +E
Sbjct: 304 ESPERI--FTGTI--VGSGDLSSQWPASKWRSLQVQWDEPTTVQRPDKVSPWEIE----- 354
Query: 401 PVIHLSPFS-PARK 413
P + SP S PA++
Sbjct: 355 PFLATSPISTPAQQ 368
Score = 116 (45.9 bits), Expect = 2.9e-70, Sum P(3) = 2.9e-70
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 616 KVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSH----VLYQDASGAIKRTG 671
KV ++ VGR +DL++L SY+EL L MF I+ +L+ V++ D G + G
Sbjct: 493 KVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQ-GQLLARDKWIVVFTDDEGDMMLAG 551
Query: 672 DEPFSDFMKSAKRLTI 687
D+P+++F K AK++ I
Sbjct: 552 DDPWNEFCKMAKKIFI 567
>TAIR|locus:2175098 [details] [associations]
symbol:ARF4 "auxin response factor 4" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;ISS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0010158 "abaxial
cell fate specification" evidence=IGI] [GO:0010050 "vegetative
phase change" evidence=IGI] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AB011483 GO:GO:0010050
HOGENOM:HOG000241141 GO:GO:0010158 EMBL:AF013466 EMBL:AF344313
EMBL:AY080832 EMBL:AY113977 IPI:IPI00525857 RefSeq:NP_200853.1
UniGene:At.6797 ProteinModelPortal:Q9ZTX9 SMR:Q9ZTX9 IntAct:Q9ZTX9
STRING:Q9ZTX9 PaxDb:Q9ZTX9 PRIDE:Q9ZTX9 EnsemblPlants:AT5G60450.1
GeneID:836166 KEGG:ath:AT5G60450 GeneFarm:3367 TAIR:At5g60450
eggNOG:NOG277773 InParanoid:Q9ZTX9 OMA:RILYTDS PhylomeDB:Q9ZTX9
ProtClustDB:CLSN2686689 Genevestigator:Q9ZTX9 GermOnline:AT5G60450
Uniprot:Q9ZTX9
Length = 788
Score = 485 (175.8 bits), Expect = 3.7e-68, Sum P(3) = 3.7e-68
Identities = 102/212 (48%), Positives = 132/212 (62%)
Query: 7 SIDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIP-----PLIFCRV 61
SI +LWHACAG + +P + V YFPQGH E V++ S IP P I CRV
Sbjct: 61 SIYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQD-AMVSYSSPLEIPKFDLNPQIVCRV 119
Query: 62 SSLKFLADSETDEVYAKIKLVPIPA-NEIDFEDNNLS-LNSV----GSDSESEKPASFAK 115
+++ LA+ +TDEVY ++ L+P+ + ++ E + L GS S P F K
Sbjct: 120 VNVQLLANKDTDEVYTQVTLLPLQEFSMLNGEGKEVKELGGEEERNGSSSVKRTPHMFCK 179
Query: 116 TLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRR 175
TLT SD + GGFSVPR AE F LDY P Q ++AKD+HG WKFRHIYRG PRR
Sbjct: 180 TLTASDTSTHGGFSVPRRAAEDCFAPLDYKQQRPSQELIAKDLHGVEWKFRHIYRGQPRR 239
Query: 176 HLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDL 207
HLLTTGWS FV+QK LV+GD+++FLR + G+L
Sbjct: 240 HLLTTGWSIFVSQKNLVSGDAVLFLRDEGGEL 271
Score = 201 (75.8 bits), Expect = 3.7e-68, Sum P(3) = 3.7e-68
Identities = 64/192 (33%), Positives = 86/192 (44%)
Query: 288 VLEAVALAASGKP-FEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSR 346
+L VA A S K F V Y PRA+ EF + ++R G RF+M FE +DS
Sbjct: 298 ILSLVANAVSTKSMFHVFYSPRATHAEFVIPYEKYITSIRSPVCIGTRFRMRFEMDDSPE 357
Query: 347 ISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLS 406
G ++ V DP WPNS WR L V WDE + + +RVSPW ++ ++P HLS
Sbjct: 358 RRC-AGVVTGVCDLDPYRWPNSKWRCLLVRWDESFVSDHQERVSPWEIDPSVSLP--HLS 414
Query: 407 PFSPARKKLRLPQQLDFPFDGQFTMPLFSGNPLGPSSPLCCLSDNT--SAGIQGARHAQF 464
S R K LD T P GNP+ ++ S +QG +
Sbjct: 415 IQSSPRPKRPWAGLLD-------TTP--PGNPITKRGGFLDFEESVRPSKVLQGQENIGS 465
Query: 465 GISSSDFHVNNK 476
S F V N+
Sbjct: 466 ASPSQGFDVMNR 477
Score = 94 (38.1 bits), Expect = 3.7e-68, Sum P(3) = 3.7e-68
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 616 KVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIE---RSDMLS-HVLYQDASGAIKRTG 671
KV + VGR +DLS L+ Y++L L +F +E R +LY D+ + G
Sbjct: 669 KVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYTDSENDMMVVG 728
Query: 672 DEPFSDF 678
D+P+ DF
Sbjct: 729 DDPWHDF 735
>TAIR|locus:2035454 [details] [associations]
symbol:MP "MONOPTEROS" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IEP]
[GO:0009725 "response to hormone stimulus" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS;TAS] [GO:0009733 "response to auxin
stimulus" evidence=IEP;RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042802 "identical protein binding" evidence=IPI]
[GO:0016020 "membrane" evidence=IDA] [GO:0009790 "embryo
development" evidence=IGI] [GO:0009908 "flower development"
evidence=IGI] [GO:0010305 "leaf vascular tissue pattern formation"
evidence=IGI] [GO:0048364 "root development" evidence=IGI]
[GO:0048507 "meristem development" evidence=IGI;RCA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0007155 "cell adhesion" evidence=RCA] [GO:0009741
"response to brassinosteroid stimulus" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0009886
"post-embryonic morphogenesis" evidence=RCA] [GO:0009887 "organ
morphogenesis" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010051 "xylem and phloem pattern formation"
evidence=IMP;RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010090 "trichome morphogenesis" evidence=RCA] [GO:0016246 "RNA
interference" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0045010 "actin nucleation"
evidence=RCA] [GO:0048439 "flower morphogenesis" evidence=RCA]
[GO:0048481 "ovule development" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0048527
"lateral root development" evidence=RCA] [GO:0048765 "root hair
cell differentiation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0071555 "cell wall organization"
evidence=RCA] [GO:0009942 "longitudinal axis specification"
evidence=IMP] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0016020 GO:GO:0003700 GO:GO:0006351
GO:GO:0048364 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0044212 GO:GO:0009908 GO:GO:0048507
EMBL:AC007797 KO:K14486 EMBL:AF037228 EMBL:AF037229 EMBL:AF334716
EMBL:BT002050 EMBL:BT008805 EMBL:AB199792 EMBL:U79557 EMBL:EF598523
EMBL:EF598524 EMBL:EF598525 EMBL:EF598526 EMBL:EF598527
EMBL:EF598528 EMBL:EF598529 EMBL:EF598530 EMBL:EF598531
EMBL:EF598532 EMBL:EF598533 EMBL:EF598534 EMBL:EF598535
EMBL:EF598536 EMBL:EF598537 EMBL:EF598538 EMBL:EF598539
EMBL:EF598540 EMBL:EF598541 EMBL:EF598542 EMBL:EF598543
EMBL:EF598544 EMBL:EF598545 EMBL:EF598546 IPI:IPI00538603
PIR:G86331 PIR:T51807 RefSeq:NP_173414.1 UniGene:At.10494
UniGene:At.41731 ProteinModelPortal:P93024 SMR:P93024 IntAct:P93024
STRING:P93024 PaxDb:P93024 PRIDE:P93024 EnsemblPlants:AT1G19850.1
GeneID:838573 KEGG:ath:AT1G19850 GeneFarm:3368 TAIR:At1g19850
eggNOG:NOG291711 InParanoid:P93024 OMA:ARYNKAT PhylomeDB:P93024
ProtClustDB:CLSN2682929 Genevestigator:P93024 GermOnline:AT1G19850
GO:GO:0010305 GO:GO:0009942 Uniprot:P93024
Length = 902
Score = 465 (168.7 bits), Expect = 3.6e-67, Sum P(3) = 3.6e-67
Identities = 93/208 (44%), Positives = 128/208 (61%)
Query: 8 IDPQLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVN------FPSSSRIPPLIFCRV 61
I+ +LWHACAG +V +P + S V+YF QGH+E S P+ +P + C+V
Sbjct: 51 INSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQV 110
Query: 62 SSLKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSD 121
++ AD ++DE+YA++ L P+ + F + + GS +E F KTLT SD
Sbjct: 111 HNVTLHADKDSDEIYAQMSLQPVHSERDVFPVPDFGMLR-GSKHPTE---FFCKTLTASD 166
Query: 122 ANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTG 181
+ GGFSVPR AE +FP LDY+A PP Q +V +D+H W FRHIYRG P+RHLLTTG
Sbjct: 167 TSTHGGFSVPRRAAEKLFPPLDYSAQPPTQELVVRDLHENTWTFRHIYRGQPKRHLLTTG 226
Query: 182 WSTFVNQKKLVAGDSIVFLRAQDGDLCV 209
WS FV K+L AGDS++F+R + L V
Sbjct: 227 WSLFVGSKRLRAGDSVLFIRDEKSQLMV 254
Score = 221 (82.9 bits), Expect = 3.6e-67, Sum P(3) = 3.6e-67
Identities = 50/110 (45%), Positives = 62/110 (56%)
Query: 288 VLEAVALAASGK-PFEVVYYPRASTPEFCVKASAVKAAMRVHWLC-GMRFKMAFETEDSS 345
VL A A A + + PF + Y PRA EF + + + A+ L GMRF M FETEDS
Sbjct: 280 VLAAAAHATANRTPFLIFYNPRACPAEFVIPLAKYRKAICGSQLSVGMRFGMMFETEDSG 339
Query: 346 RISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVE 395
+ +MGTI + DP+ WP S WR LQV WDEP RVSPW +E
Sbjct: 340 KRR-YMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCNDKPTRVSPWDIE 388
Score = 102 (41.0 bits), Expect = 3.6e-67, Sum P(3) = 3.6e-67
Identities = 37/148 (25%), Positives = 66/148 (44%)
Query: 550 SCSDDVVSQVLGKSSSDGHSDKVKASSDGSGSTHEQRXXXXXXXXXXXXWNR--SFQVTE 607
S + DV SQ+ S +D + + D SG T ++ S+Q
Sbjct: 729 SFAQDVQSQITSASFADSQAFSRQDFPDNSGGTGTSSSNVDFDDCSLRQNSKGSSWQKIA 788
Query: 608 SGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSH-------VLY 660
+ + KV ++ VGR++D++ YEEL + MFG+E +L+H ++Y
Sbjct: 789 TPRVRTYTKV-QKTGSVGRSIDVTSFKDYEELKSAIECMFGLE--GLLTHPQSSGWKLVY 845
Query: 661 QDASGAIKRTGDEPFSDFMKSAKRLTIL 688
D + GD+P+ +F+ + + IL
Sbjct: 846 VDYESDVLLVGDDPWEEFVGCVRCIRIL 873
>TAIR|locus:2057609 [details] [associations]
symbol:ETT "ETTIN" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009725 "response to hormone
stimulus" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0009850 "auxin
metabolic process" evidence=TAS] [GO:0010158 "abaxial cell fate
specification" evidence=IGI] [GO:0010050 "vegetative phase change"
evidence=IGI;RCA;IMP] [GO:0007389 "pattern specification process"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048438 "floral whorl development" evidence=RCA] [GO:0048439
"flower morphogenesis" evidence=RCA] [GO:0048519 "negative
regulation of biological process" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=ISS] InterPro:IPR003340
InterPro:IPR010525 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009733 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0009850 GO:GO:0010050 HOGENOM:HOG000241141
KO:K14486 EMBL:U89296 EMBL:AF007788 EMBL:U78721 EMBL:AF336917
EMBL:AF360313 EMBL:AY056365 EMBL:AB199791 IPI:IPI00527337
PIR:E84750 PIR:T03278 RefSeq:NP_180942.1 UniGene:At.10360
ProteinModelPortal:O23661 SMR:O23661 IntAct:O23661 STRING:O23661
EnsemblPlants:AT2G33860.1 GeneID:817956 KEGG:ath:AT2G33860
GeneFarm:3366 TAIR:At2g33860 eggNOG:NOG315820 InParanoid:O23661
OMA:HESNNES PhylomeDB:O23661 ProtClustDB:CLSN2913114
Genevestigator:O23661 GermOnline:AT2G33860 GO:GO:0010158
Uniprot:O23661
Length = 608
Score = 501 (181.4 bits), Expect = 7.3e-67, Sum P(3) = 7.3e-67
Identities = 99/203 (48%), Positives = 133/203 (65%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSR-IPPLIFCRVSSLKFLAD 69
+LWHACAG ++ +P S V YFPQGH E + +F ++ +PP +FCR+ +K A+
Sbjct: 54 ELWHACAGPLISLPKRGSLVLYFPQGHLEQA---PDFSAAIYGLPPHVFCRILDVKLHAE 110
Query: 70 SETDEVYAKIKLVPIPAN-EIDFEDNNLSLNSVGSDSE----SEKPASFAKTLTQSDANN 124
+ TDEVYA++ L+P + E + + ++ D E S P F KTLT SD +
Sbjct: 111 TTTDEVYAQVSLLPESEDIERKVREGIIDVDGGEEDYEVLKRSNTPHMFCKTLTASDTST 170
Query: 125 GGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWST 184
GGFSVPR AE FP LDY+ P Q ++A+D+HG W+FRHIYRG PRRHLLTTGWS
Sbjct: 171 HGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSA 230
Query: 185 FVNQKKLVAGDSIVFLRAQDGDL 207
FVN+KKLV+GD+++FLR DG L
Sbjct: 231 FVNKKKLVSGDAVLFLRGDDGKL 253
Score = 169 (64.5 bits), Expect = 7.3e-67, Sum P(3) = 7.3e-67
Identities = 41/98 (41%), Positives = 53/98 (54%)
Query: 301 FEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSS-RISWFMGTISSVQV 359
F + Y P+AS F + A + + GMRFK E+ED+S R S G IS +
Sbjct: 295 FSISYNPKASWSNFIIPAPKFLKVVDYPFCIGMRFKARVESEDASERRS--PGIISGISD 352
Query: 360 ADPISWPNSPWRLLQVTWDEPDLLQN--VKRVSPWLVE 395
DPI WP S WR L V WD D++ N +RVSPW +E
Sbjct: 353 LDPIRWPGSKWRCLLVRWD--DIVANGHQQRVSPWEIE 388
Score = 40 (19.1 bits), Expect = 7.3e-67, Sum P(3) = 7.3e-67
Identities = 18/47 (38%), Positives = 22/47 (46%)
Query: 499 ILTSHTNSSENLSCLLTMGNS-NQNLEKSENIKKHQFLLFGQPIRTE 544
IL +SS + S LLT NS N LE + LFG P+ E
Sbjct: 516 ILPPSVSSSPS-SVLLTNSNSPNGRLEDHHG-GSGRCRLFGFPLTDE 560
Score = 39 (18.8 bits), Expect = 2.9e-53, Sum P(3) = 2.9e-53
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 223 EYPSSGWNSNNGSCVTGNP 241
E SG SN+GS VT P
Sbjct: 386 EIEPSGSISNSGSFVTTGP 404
Score = 38 (18.4 bits), Expect = 5.0e-08, Sum P(3) = 5.0e-08
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 84 IPANEIDFEDNNLSLNSVGSDSESEKPASFAK-TLTQSDANNGGG 127
I N ++ E++ + S S S P S + +++ +N+ GG
Sbjct: 5 IDLNVMETEEDETQTQTPSSASGSVSPTSSSSASVSVVSSNSAGG 49
>TAIR|locus:2138096 [details] [associations]
symbol:ARF9 "auxin response factor 9" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009734
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 HOGENOM:HOG000241141
EMBL:AF082176 EMBL:AC002343 EMBL:AL078468 EMBL:AL161560
EMBL:AF344312 EMBL:AK221865 EMBL:AK228263 IPI:IPI00519218
IPI:IPI00657180 PIR:T08917 RefSeq:NP_001031706.1 RefSeq:NP_194129.1
UniGene:At.3396 ProteinModelPortal:Q9XED8 SMR:Q9XED8 IntAct:Q9XED8
PaxDb:Q9XED8 PRIDE:Q9XED8 EnsemblPlants:AT4G23980.1 GeneID:828498
KEGG:ath:AT4G23980 GeneFarm:3373 TAIR:At4g23980 eggNOG:NOG300390
InParanoid:Q9XED8 OMA:YAQITLI PhylomeDB:Q9XED8
ProtClustDB:CLSN2685375 Genevestigator:Q9XED8 Uniprot:Q9XED8
Length = 638
Score = 460 (167.0 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 96/205 (46%), Positives = 126/205 (61%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAEH---SLGSVNFPSSSRI---PPLIFCRVSSL 64
+LW CAG +V +P V+YFPQGH E S V+ + + PP I C V ++
Sbjct: 12 ELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFVLPPKILCNVMNV 71
Query: 65 KFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDANN 124
A+ +TDEVYA+I L+P+ E+D +S + + + K SF+K LT SD +
Sbjct: 72 SLQAEKDTDEVYAQITLIPV-GTEVD---EPMSPDPSPPELQRPKVHSFSKVLTASDTST 127
Query: 125 GGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWST 184
GGFSV R A P LD T P Q +VA+DVHG WKF+HI+RG PRRHLLTTGWST
Sbjct: 128 HGGFSVLRKHATECLPPLDMTQQTPTQELVAEDVHGYQWKFKHIFRGQPRRHLLTTGWST 187
Query: 185 FVNQKKLVAGDSIVFLRAQDGDLCV 209
FV K+LVAGD+ VFLR ++G+L V
Sbjct: 188 FVTSKRLVAGDTFVFLRGENGELRV 212
Score = 185 (70.2 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 76/257 (29%), Positives = 107/257 (41%)
Query: 226 SSGWNS--NNGSCVTGNPFGGFSCFLREEENKMARNGNMNLNSYXXXXXXXXXXXXXXRV 283
++GW++ + V G+ F FLR E ++ R G N +
Sbjct: 182 TTGWSTFVTSKRLVAGDTF----VFLRGENGEL-RVGVRRANLQQSSMPSSVISSHSMHL 236
Query: 284 KPEMVLEAVALAASGKPFEVVYY-PRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETE 342
VL A K +VYY PR S +F + + AM + GMRFKM FE E
Sbjct: 237 G---VLATARHATQTKTMFIVYYKPRTS--QFIISLNKYLEAMSNKFSVGMRFKMRFEGE 291
Query: 343 DSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPV 402
DS + GT+ V+ P W +S WR L+V WDEP + +VSPW +E N
Sbjct: 292 DSPERR-YSGTVIGVKDCSP-HWKDSKWRCLEVHWDEPASISRPNKVSPWEIEPFVNSEN 349
Query: 403 IHLSPFSPARKKLRLPQQLD--FPFDGQFTMP-LFSGNPLGPSS-PLCCLSDNTSAGIQG 458
+ P S K R P+Q+ D T L+S P C++ S+ Q
Sbjct: 350 V---PKSVMLKNKR-PRQVSEVSALDVGITASNLWSSVLTQPHEFAQSCITSQWSSPQQC 405
Query: 459 ARHAQFGISSSDFHVNN 475
R A SD+ +NN
Sbjct: 406 HRDANEDAKKSDW-LNN 421
Score = 103 (41.3 bits), Expect = 1.2e-66, Sum P(3) = 1.2e-66
Identities = 26/90 (28%), Positives = 43/90 (47%)
Query: 601 RSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIE---RSDMLSH 657
+ Q +S KV ++ VGR +DL+ L Y EL + +F I+ RS
Sbjct: 512 KEVQSKQSSSTRSRTKVQMQGVPVGRAVDLNALKGYNELIDDIEKLFDIKGELRSRNQWE 571
Query: 658 VLYQDASGAIKRTGDEPFSDFMKSAKRLTI 687
+++ D G + GD+P+ +F KR+ I
Sbjct: 572 IVFTDDEGDMMLVGDDPWPEFCNMVKRIFI 601
>TAIR|locus:2174013 [details] [associations]
symbol:ARF2 "auxin response factor 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IMP;TAS] [GO:0009911 "positive regulation of flower
development" evidence=IMP] [GO:0010047 "fruit dehiscence"
evidence=IMP] [GO:0010150 "leaf senescence" evidence=IMP]
[GO:0010227 "floral organ abscission" evidence=IMP] [GO:0008285
"negative regulation of cell proliferation" evidence=IMP]
[GO:0048481 "ovule development" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] InterPro:IPR003311 InterPro:IPR003340
InterPro:IPR010525 InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362
Pfam:PF06507 PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019
GO:GO:0009737 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0045892 GO:GO:0008285 GO:GO:0009734 GO:GO:0043565
GO:GO:0003700 GO:GO:0006351 GO:GO:0010150 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009911 GO:GO:0010047
GO:GO:0010227 GO:GO:0048481 EMBL:AY669787 EMBL:AB016880
EMBL:AF336918 EMBL:AF378862 EMBL:BT000784 EMBL:BT001072
EMBL:AK221252 EMBL:AK221254 EMBL:AK221274 EMBL:AK221277
EMBL:AK221282 EMBL:AK221305 EMBL:U89771 EMBL:AJ441313 EMBL:AJ458328
IPI:IPI00518739 RefSeq:NP_201006.2 RefSeq:NP_851244.1
RefSeq:NP_974980.1 UniGene:At.21704 ProteinModelPortal:Q94JM3
SMR:Q94JM3 DIP:DIP-46014N IntAct:Q94JM3 STRING:Q94JM3 PaxDb:Q94JM3
PRIDE:Q94JM3 EnsemblPlants:AT5G62000.1 EnsemblPlants:AT5G62000.2
EnsemblPlants:AT5G62000.3 GeneID:836321 KEGG:ath:AT5G62000
GeneFarm:3364 TAIR:At5g62000 eggNOG:NOG255064 InParanoid:Q94JM3
OMA:HTESVEC PhylomeDB:Q94JM3 ProtClustDB:CLSN2680590
Genevestigator:Q94JM3 GermOnline:AT5G62000 Uniprot:Q94JM3
Length = 859
Score = 463 (168.0 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 97/216 (44%), Positives = 136/216 (62%)
Query: 5 EKSIDPQ------LWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIP---- 54
E+++DP+ LWHACAG +V +P + VFYFPQGH E S N + ++P
Sbjct: 49 ERALDPEAALYRELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLYDL 108
Query: 55 PL-IFCRVSSLKFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASF 113
P + CRV ++ A+++TDEVYA+I L+P AN+ ++N + + + SF
Sbjct: 109 PSKLLCRVINVDLKAEADTDEVYAQITLLP-EANQ---DENAIEKEAPLPPPPRFQVHSF 164
Query: 114 AKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTP 173
KTLT SD + GGFSV R A+ P LD + PP Q +VAKD+H W+FRHI+RG P
Sbjct: 165 CKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHANEWRFRHIFRGQP 224
Query: 174 RRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCV 209
RRHLL +GWS FV+ K+LVAGD+ +FLR ++G+L V
Sbjct: 225 RRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRV 260
Score = 212 (79.7 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 48/119 (40%), Positives = 62/119 (52%)
Query: 296 ASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTIS 355
++G F V Y PR S EF V +++ ++ GMRFKM FE E++ F GTI
Sbjct: 295 STGTMFTVYYKPRTSPSEFIVPFDQYMESVKNNYSIGMRFKMRFEGEEAPE-QRFTGTIV 353
Query: 356 SVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKK 414
++ +DP WP S WR L+V WDE + RVSPW VE P LSP R K
Sbjct: 354 GIEESDPTRWPKSKWRSLKVRWDETSSIPRPDRVSPWKVEPALAPPA--LSPVPMPRPK 410
Score = 85 (35.0 bits), Expect = 2.2e-64, Sum P(3) = 2.2e-64
Identities = 42/175 (24%), Positives = 73/175 (41%)
Query: 524 EKSENIKKHQFLLFGQPIRTEQQISHSCSDDVVSQVLGKSSSDG----HSDKVKASSD-- 577
E++ ++ LFG P+ + +D +SQ + + G S KV+ SD
Sbjct: 644 EETAKSREGNCRLFGIPLTNNM----NGTDSTMSQRNNLNDAAGLTQIASPKVQDLSDQS 699
Query: 578 -GSGSTHEQRXXXXXXXXXXXXWNRSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSY 636
GS ST++ R + Q T++ KV + +GR++DLS +Y
Sbjct: 700 KGSKSTNDHREQGRPFQTNNPH-PKDAQ-TKTNSSRSCTKVHKQGIALGRSVDLSKFQNY 757
Query: 637 EELYRRLAIMFGIERSDMLSH----VLYQDASGAIKRTGDEPFSDFMKSAKRLTI 687
EEL L +F M ++Y D + GD+P+ +F +++ I
Sbjct: 758 EELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFI 812
>TAIR|locus:2025991 [details] [associations]
symbol:ARF1 "auxin response factor 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA;IDA;IPI] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;TAS] [GO:0009725 "response to hormone stimulus"
evidence=IEA] [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS;TAS] [GO:0010150 "leaf
senescence" evidence=IGI] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016246
"RNA interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0009733
"response to auxin stimulus" evidence=IEP] InterPro:IPR003311
InterPro:IPR003340 InterPro:IPR010525 InterPro:IPR011525
Pfam:PF02309 Pfam:PF02362 Pfam:PF06507 PROSITE:PS50863
PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892 GO:GO:0009733
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0010150 EMBL:AC007258 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:U83245 EMBL:AY133723 EMBL:BT002748
IPI:IPI00518211 IPI:IPI00520405 PIR:D96621 RefSeq:NP_001031208.1
RefSeq:NP_176184.1 RefSeq:NP_849830.1 UniGene:At.74832
ProteinModelPortal:Q8L7G0 SMR:Q8L7G0 IntAct:Q8L7G0 STRING:Q8L7G0
EnsemblPlants:AT1G59750.1 EnsemblPlants:AT1G59750.3 GeneID:842268
KEGG:ath:AT1G59750 GeneFarm:3363 TAIR:At1g59750 eggNOG:NOG257828
HOGENOM:HOG000241141 InParanoid:Q8L7G0 KO:K14486 OMA:QMPSFNL
PhylomeDB:Q8L7G0 ProtClustDB:CLSN2679699 Genevestigator:Q8L7G0
GermOnline:AT1G59750 Uniprot:Q8L7G0
Length = 665
Score = 442 (160.7 bits), Expect = 3.8e-64, Sum P(3) = 3.8e-64
Identities = 95/205 (46%), Positives = 128/205 (62%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVN------FPSSSRIPPLIFCRVSSL 64
+LWHACAG +V +P V+YFP+GH E S++ PS + +P I C+V ++
Sbjct: 22 ELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSFN-LPSKILCKVINI 80
Query: 65 KFLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDANN 124
+ A+ ETDEVYA+I L+P E+D + S ++ + E SF KTLT SD +
Sbjct: 81 QRRAEPETDEVYAQITLLP----ELD-QSEPTSPDAPVQEPEKCTVHSFCKTLTASDTST 135
Query: 125 GGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWST 184
GGFSV R A+ P LD + PP Q +VA D+H W FRHI+RG PRRHLLTTGWS
Sbjct: 136 HGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHNSEWHFRHIFRGQPRRHLLTTGWSV 195
Query: 185 FVNQKKLVAGDSIVFLRAQDGDLCV 209
FV+ KKLVAGD+ +FLR ++ +L V
Sbjct: 196 FVSSKKLVAGDAFIFLRGENEELRV 220
Score = 201 (75.8 bits), Expect = 3.8e-64, Sum P(3) = 3.8e-64
Identities = 57/142 (40%), Positives = 67/142 (47%)
Query: 288 VLEAVALA-ASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSR 346
VL A A +G F V Y PR S EF V + A GMRFKM FE E++
Sbjct: 246 VLATAAHAITTGTIFSVFYKPRTSRSEFIVSVNRYLEAKTQKLSVGMRFKMRFEGEEAPE 305
Query: 347 ISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVE-LVSNMPVIHL 405
F GTI VQ W +S WR L+V WDEP + +RVSPW +E LV+N
Sbjct: 306 -KRFSGTIVGVQENKSSVWHDSEWRSLKVQWDEPSSVFRPERVSPWELEPLVANSTPSS- 363
Query: 406 SPFSPARKKLRLPQQLDFPFDG 427
P P R K P L P G
Sbjct: 364 QPQPPQRNKRPRPPGLPSPATG 385
Score = 104 (41.7 bits), Expect = 3.8e-64, Sum P(3) = 3.8e-64
Identities = 27/92 (29%), Positives = 49/92 (53%)
Query: 601 RSFQVTESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLS---- 656
RS Q ++S KV ++ VGR +DL+ YE+L+++L MF I + ++L
Sbjct: 531 RSPQESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDI-KGELLESTKK 589
Query: 657 -HVLYQDASGAIKRTGDEPFSDFMKSAKRLTI 687
V+Y D + GD+P+++F +++ I
Sbjct: 590 WQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFI 621
>TAIR|locus:2009298 [details] [associations]
symbol:ARF21 "auxin response factor 21" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC023279 EMBL:AC023913 IPI:IPI00539451
PIR:E86468 RefSeq:NP_174701.2 UniGene:At.51930
ProteinModelPortal:Q9C8N9 SMR:Q9C8N9 EnsemblPlants:AT1G34410.1
GeneID:840344 KEGG:ath:AT1G34410 GeneFarm:3425 TAIR:At1g34410
PhylomeDB:Q9C8N9 Genevestigator:Q9C8N9 GermOnline:AT1G34410
Uniprot:Q9C8N9
Length = 606
Score = 368 (134.6 bits), Expect = 2.9e-50, Sum P(3) = 2.9e-50
Identities = 83/207 (40%), Positives = 115/207 (55%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSR-----IPPLIFCRVSSLK 65
QLW CAG + IP L V+YFPQG+ E S + +P + CRV ++
Sbjct: 27 QLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELNELQPICDLPSKLQCRVIAIH 86
Query: 66 FLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESE-KPA--SFAKTLTQSDA 122
++ +DE+YA+I L+P + + + SE+ +P SF K LT SD
Sbjct: 87 LKVENNSDEIYAEITLMPDTTQVV-----------IPTQSENRFRPLVNSFTKVLTASDT 135
Query: 123 NNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGW 182
+ GGFSVP+ A P LD + P Q ++A D+H W+FRH YRGTP+RH LTTGW
Sbjct: 136 SAYGGFSVPKKHAIECLPPLDMSQPLPAQEILAIDLHDNQWRFRHNYRGTPQRHSLTTGW 195
Query: 183 STFVNQKKLVAGDSIVFLRAQDGDLCV 209
+ F+ KKLV GD IVF+R + G+L V
Sbjct: 196 NEFITSKKLVKGDVIVFVRGETGELRV 222
Score = 160 (61.4 bits), Expect = 2.9e-50, Sum P(3) = 2.9e-50
Identities = 50/145 (34%), Positives = 68/145 (46%)
Query: 301 FEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVA 360
F VVY PR+S +F V A+ + G RF M FE +D S +F GTI V
Sbjct: 262 FIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERRYF-GTIIGVSDF 318
Query: 361 DPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKLRLPQQ 420
P W S WR L+V WDE +VSPW +E + +P +++ P S K RL +
Sbjct: 319 SP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHL--VPALNV-PRSSLLKNKRLREV 374
Query: 421 LDFPFDGQFTMP--LFSGNPLGPSS 443
+F +P L G +G S
Sbjct: 375 NEFGSSSSHLLPPILTQGQEIGQLS 399
Score = 102 (41.0 bits), Expect = 2.9e-50, Sum P(3) = 2.9e-50
Identities = 23/75 (30%), Positives = 41/75 (54%)
Query: 616 KVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSH---VLYQDASGAIKRTGD 672
KV ++ +GR +DLSVL+ Y++L L +F I+ + + + D+ G GD
Sbjct: 515 KVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQTRNQWKIAFTDSDGYEMLVGD 574
Query: 673 EPFSDFMKSAKRLTI 687
+P+ +F K K++ I
Sbjct: 575 DPWPEFCKMVKKILI 589
Score = 41 (19.5 bits), Expect = 7.2e-38, Sum P(3) = 7.2e-38
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 455 GIQGARHAQFGISSSDFHVNNKLQSGLFLSSLQRF 489
GI+ ARH Q I SS ++ ++ G+ S+ F
Sbjct: 223 GIRRARHQQGNIPSSIVSIDC-MRHGVIASAKHAF 256
>TAIR|locus:2026145 [details] [associations]
symbol:ARF12 "auxin response factor 12" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0009725 "response
to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 EMBL:AY669792 EMBL:AC007454
IPI:IPI00544760 PIR:C86467 RefSeq:NP_174691.2 UniGene:At.51185
ProteinModelPortal:Q9XID4 SMR:Q9XID4 IntAct:Q9XID4
EnsemblPlants:AT1G34310.1 GeneID:840331 KEGG:ath:AT1G34310
GeneFarm:3390 TAIR:At1g34310 eggNOG:NOG264447 PhylomeDB:Q9XID4
ProtClustDB:CLSN2681760 ArrayExpress:Q9XID4 Genevestigator:Q9XID4
GermOnline:AT1G34310 Uniprot:Q9XID4
Length = 593
Score = 374 (136.7 bits), Expect = 1.6e-48, Sum P(3) = 1.6e-48
Identities = 83/204 (40%), Positives = 111/204 (54%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAE----HSLGSVN-FPSSSRIPPLIFCRVSSLK 65
QLW CAG + IP L V+YFPQGH E + +N +P + CRV ++
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELNELQPICDLPSKLQCRVIAIH 86
Query: 66 FLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDANNG 125
++ +DE YA+I L+P + N + + SF K LT SD +
Sbjct: 87 LKVENNSDETYAEITLMPDTTQVVIPTQNENQFRPLVN--------SFTKVLTASDTSAH 138
Query: 126 GGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTF 185
GGF VP+ A P LD + P Q ++A D+HG W+F H YRGTP+RHLLTTGW+ F
Sbjct: 139 GGFFVPKKHAIECLPSLDMSQPLPAQELLAIDLHGNQWRFNHNYRGTPQRHLLTTGWNAF 198
Query: 186 VNQKKLVAGDSIVFLRAQDGDLCV 209
KKLVAGD IVF+R + G+L V
Sbjct: 199 TTSKKLVAGDVIVFVRGETGELRV 222
Score = 148 (57.2 bits), Expect = 1.6e-48, Sum P(3) = 1.6e-48
Identities = 45/117 (38%), Positives = 57/117 (48%)
Query: 301 FEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVA 360
F VVY PR+S +F V A+ + G RF M E +D S F GTI V
Sbjct: 262 FTVVYKPRSS--KFIVSYDKFLDAVNNKFNVGSRFTMRLEGDDFSERRCF-GTIIGVSDF 318
Query: 361 DPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLS-PFSPARKKLR 416
P W S WR L+V WDE K+VSPW +E + MP I++ F K+LR
Sbjct: 319 SP-HWKCSEWRSLEVQWDEFTSFPGPKKVSPWDIEHL--MPAINVPRSFLLKNKRLR 372
Score = 88 (36.0 bits), Expect = 1.6e-48, Sum P(3) = 1.6e-48
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 616 KVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSH---VLYQDASGAIKRTGD 672
KV ++ +GR +DLSVL+ Y++L L +F I+ + + + D+ GD
Sbjct: 515 KVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDIKGQLQTRNQWEIAFTDSDEDKMLVGD 574
Query: 673 EPFSDFMKSAKRLTI 687
+P+ +F K++ I
Sbjct: 575 DPWPEFCNMVKKIFI 589
Score = 40 (19.1 bits), Expect = 2.9e-37, Sum P(3) = 2.9e-37
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 455 GIQGARHAQFGISSSDFHVNNKLQSGLFLSSLQRF 489
GI+ ARH Q I SS ++ ++ G+ S+ F
Sbjct: 223 GIRRARHQQGNIPSSIVSIDC-MRHGVVASAKHAF 256
>TAIR|locus:2206717 [details] [associations]
symbol:ARF20 "auxin response factor 20" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC069160 HOGENOM:HOG000241141
eggNOG:NOG264447 ProtClustDB:CLSN2681760 EMBL:AY669795
IPI:IPI00656906 PIR:D86473 RefSeq:NP_174758.2 UniGene:At.51187
ProteinModelPortal:Q9C7I9 SMR:Q9C7I9 IntAct:Q9C7I9 PaxDb:Q9C7I9
PRIDE:Q9C7I9 EnsemblPlants:AT1G35240.1 GeneID:840413
KEGG:ath:AT1G35240 GeneFarm:3424 TAIR:At1g35240 PhylomeDB:Q9C7I9
Genevestigator:Q9C7I9 GermOnline:AT1G35240 Uniprot:Q9C7I9
Length = 590
Score = 353 (129.3 bits), Expect = 2.6e-48, Sum P(3) = 2.6e-48
Identities = 83/207 (40%), Positives = 114/207 (55%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAE----HSLGSVN-FPSSSRIPPLIFCRVSSLK 65
QLW CAG + IP L V+YFPQG+ E + +N +P + CRV ++
Sbjct: 27 QLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELNELQPICDLPSKLQCRVIAIH 86
Query: 66 FLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESE-KPA--SFAKTLTQSDA 122
++ +DE YA+I L+P + + + SE++ +P SF K LT SD
Sbjct: 87 LKVENNSDETYAEITLMPDTTQVV-----------IPTQSENQFRPLVNSFTKVLTASDT 135
Query: 123 NNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGW 182
+ GGF VP+ A P L P Q ++AKD+HG W+FRH YRGTP+RH LTTGW
Sbjct: 136 SAYGGFFVPKKHAIECLPPLPL----PAQELLAKDLHGNQWRFRHSYRGTPQRHSLTTGW 191
Query: 183 STFVNQKKLVAGDSIVFLRAQDGDLCV 209
+ F KKLV GD IVF+R + G+L V
Sbjct: 192 NEFTTSKKLVKGDVIVFVRGETGELRV 218
Score = 159 (61.0 bits), Expect = 2.6e-48, Sum P(3) = 2.6e-48
Identities = 51/143 (35%), Positives = 66/143 (46%)
Query: 301 FEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVA 360
F VVY P + +F V AM ++ G RF M FE +D S +F GTI V
Sbjct: 258 FIVVYKPSIRSSQFIVSYDKFLDAMNNKFIVGSRFTMRFEGDDFSERRYF-GTIIGVNDF 316
Query: 361 DPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVE-LVSNMPVIHLSPFSPARKKLRLPQ 419
P W S WR L+V WDE +VSPW +E L+S + V P S K RL +
Sbjct: 317 SP-HWKCSEWRSLEVQWDEFASFSRPNKVSPWEIEHLMSALNV----PRSSLLKNKRLRE 371
Query: 420 QLDFPFDGQFTMPLFSGNPLGPS 442
+F GQ L +P+ S
Sbjct: 372 VNEF---GQEIGQLSVASPMNTS 391
Score = 101 (40.6 bits), Expect = 2.6e-48, Sum P(3) = 2.6e-48
Identities = 24/80 (30%), Positives = 43/80 (53%)
Query: 612 TGHC-KVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSH---VLYQDASGAI 667
T C KV ++ +GR +DLSVL+ Y++L L +F ++ + + + D+ G
Sbjct: 494 TRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQTRNQWKIAFTDSDGYE 553
Query: 668 KRTGDEPFSDFMKSAKRLTI 687
GD+P+ +F K K++ I
Sbjct: 554 MLVGDDPWPEFCKMVKKILI 573
Score = 38 (18.4 bits), Expect = 1.0e-35, Sum P(3) = 1.0e-35
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 455 GIQGARHAQFGISSS 469
GI+ ARH Q I SS
Sbjct: 219 GIRRARHQQGNIPSS 233
>TAIR|locus:2036288 [details] [associations]
symbol:ARF22 "auxin response factor 22" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 ProtClustDB:CLSN2681760
EMBL:AC023913 EMBL:AY669796 IPI:IPI00545778 PIR:C86468
RefSeq:NP_174699.2 UniGene:At.51186 ProteinModelPortal:Q9C8N7
SMR:Q9C8N7 IntAct:Q9C8N7 EnsemblPlants:AT1G34390.1 GeneID:840341
KEGG:ath:AT1G34390 GeneFarm:3426 TAIR:At1g34390 OMA:NITTNAN
PhylomeDB:Q9C8N7 Genevestigator:Q9C8N7 Uniprot:Q9C8N7
Length = 598
Score = 362 (132.5 bits), Expect = 7.1e-47, Sum P(3) = 7.1e-47
Identities = 81/204 (39%), Positives = 111/204 (54%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSR-----IPPLIFCRVSSLK 65
QLW CAG + IP L ++YFPQG+ E S + +P + CRV +++
Sbjct: 27 QLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELNELKPICDLPSKLQCRVIAIQ 86
Query: 66 FLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDANNG 125
++ +DE YA+I L+P + N + + SF K LT SD +
Sbjct: 87 LKVENNSDETYAEITLMPDTTQVVIPTQNENQFRPLVN--------SFTKVLTASDTS-- 136
Query: 126 GGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTF 185
GGF VP+ A P LD + P Q ++A D+HG W+F H YRGTP+RHLLTTGW+ F
Sbjct: 137 GGFFVPKKHAIECLPPLDMSQPLPTQELLATDLHGNQWRFNHNYRGTPQRHLLTTGWNAF 196
Query: 186 VNQKKLVAGDSIVFLRAQDGDLCV 209
KKLVAGD IVF+R + G+L V
Sbjct: 197 TTSKKLVAGDVIVFVRGETGELRV 220
Score = 152 (58.6 bits), Expect = 7.1e-47, Sum P(3) = 7.1e-47
Identities = 49/145 (33%), Positives = 66/145 (45%)
Query: 301 FEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVA 360
F VVY PR+S +F V A+ + G RF M FE +D S +F GTI V
Sbjct: 260 FIVVYKPRSS--QFIVSYDKFLDAVNNKFNVGSRFTMRFEGDDFSERRYF-GTIIGVSDF 316
Query: 361 DPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFSPARKKLRLPQQ 420
P W S WR L+V WDE +VSPW +E + MP +++ P K RL +
Sbjct: 317 SP-HWKCSEWRNLEVQWDEFASFSRPNKVSPWEIEHL--MPALNV-PRPSLLKNKRLREV 372
Query: 421 LDFPFDGQFTMP--LFSGNPLGPSS 443
+ +P L G +G S
Sbjct: 373 NEIGSSSSHLLPPILTQGQEIGQLS 397
Score = 84 (34.6 bits), Expect = 7.1e-47, Sum P(3) = 7.1e-47
Identities = 22/85 (25%), Positives = 41/85 (48%)
Query: 612 TGHC-KVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSH---VLYQDASGAI 667
T C KV ++ + R +DLSVL+ Y++L L +F ++ + + + D+
Sbjct: 508 TRTCTKVQMQGVTIERAVDLSVLNGYDQLILELEELFDLKGQLQTRNQWEIAFTDSDDDK 567
Query: 668 KRTGDEPFSDFMKSAKRLTILMGSG 692
GD+P+ +F K++ I G
Sbjct: 568 MLVGDDPWPEFCNMVKKILIFKRGG 592
>TAIR|locus:2014731 [details] [associations]
symbol:ARF14 "auxin response factor 14" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009734 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 HOGENOM:HOG000241141 eggNOG:NOG264447
ProtClustDB:CLSN2681760 EMBL:AC007887 IPI:IPI00548517 PIR:G86476
RefSeq:NP_174786.1 UniGene:At.39556 ProteinModelPortal:Q9LQE8
SMR:Q9LQE8 IntAct:Q9LQE8 PRIDE:Q9LQE8 EnsemblPlants:AT1G35540.1
GeneID:840450 KEGG:ath:AT1G35540 GeneFarm:3394 TAIR:At1g35540
OMA:DITEDAM PhylomeDB:Q9LQE8 Genevestigator:Q9LQE8 Uniprot:Q9LQE8
Length = 605
Score = 373 (136.4 bits), Expect = 2.6e-45, Sum P(3) = 2.6e-45
Identities = 84/204 (41%), Positives = 110/204 (53%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVNFPSSSRIPPLIF-----CRVSSLK 65
QLW CAG + IP L V+YFPQGH E S + P F CRV +++
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPICDFPSKLQCRVIAIQ 86
Query: 66 FLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDANNG 125
++ +DE YA+I L+P + N + + SF K LT SD +
Sbjct: 87 LKVENNSDETYAEITLMPDTTQVVIPTQNQNQFRPLVN--------SFTKVLTASDTSVH 138
Query: 126 GGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTF 185
GGFSVP+ A P LD + P Q ++A D+HG W+FRHIYRGT +RHLLT GW+ F
Sbjct: 139 GGFSVPKKHAIECLPPLDMSQPLPTQEILAIDLHGNQWRFRHIYRGTAQRHLLTIGWNAF 198
Query: 186 VNQKKLVAGDSIVFLRAQDGDLCV 209
KKLV GD IVF+R + G+L V
Sbjct: 199 TTSKKLVEGDVIVFVRGETGELRV 222
Score = 133 (51.9 bits), Expect = 2.6e-45, Sum P(3) = 2.6e-45
Identities = 41/109 (37%), Positives = 51/109 (46%)
Query: 301 FEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVA 360
F VVY PR+S +F V + + G RF M FE +D S F GTI V
Sbjct: 262 FIVVYKPRSS--QFIVSYDKFLDVVNNKFNVGSRFTMRFEGDDFSERRSF-GTIIGVSDF 318
Query: 361 DPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIHLSPFS 409
P W S WR L+V WDE +VSPW +E HL+P+S
Sbjct: 319 SP-HWKCSEWRSLEVQWDEFASFPRPNQVSPWDIE--------HLTPWS 358
Score = 75 (31.5 bits), Expect = 2.6e-45, Sum P(3) = 2.6e-45
Identities = 20/80 (25%), Positives = 40/80 (50%)
Query: 612 TGHC-KVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSH---VLYQDASGAI 667
T C KV ++ +GR +DLSVL+ Y++L L +F ++ + + + +
Sbjct: 509 TRTCTKVQMQGVTIGRAVDLSVLNGYDQLILELEKLFDLKGQLQARNQWEIAFTNNEEDK 568
Query: 668 KRTGDEPFSDFMKSAKRLTI 687
G++P+ +F K++ I
Sbjct: 569 MLVGEDPWPEFCNMVKKIFI 588
>TAIR|locus:2008991 [details] [associations]
symbol:ARF13 "AUXIN RESPONSE FACTOR 13" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009725
"response to hormone stimulus" evidence=IEA] [GO:0046983 "protein
dimerization activity" evidence=IEA] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006863 "purine nucleobase transport" evidence=RCA]
InterPro:IPR003311 InterPro:IPR003340 InterPro:IPR010525
InterPro:IPR011525 Pfam:PF02309 Pfam:PF02362 Pfam:PF06507
PROSITE:PS50863 PROSITE:PS50962 SMART:SM01019 EMBL:CP002684
GO:GO:0005634 GO:GO:0009734 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 IPI:IPI00938986 RefSeq:NP_001154393.1
UniGene:At.51184 ProteinModelPortal:F4HT52 SMR:F4HT52 PRIDE:F4HT52
EnsemblPlants:AT1G34170.3 GeneID:840316 KEGG:ath:AT1G34170
OMA:PEFCNMA ArrayExpress:F4HT52 Uniprot:F4HT52
Length = 546
Score = 340 (124.7 bits), Expect = 2.8e-41, Sum P(4) = 2.8e-41
Identities = 73/204 (35%), Positives = 110/204 (53%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSV-----NFPSSSRIPPLIFCRVSSLK 65
+LW+ CAG + +P V+YFPQGH E S + +P + CRV ++
Sbjct: 25 KLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIFDLPSKLRCRVVAID 84
Query: 66 FLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDANNG 125
D TDEVYA+I L+P + + ++ D+ F+K LT SD +
Sbjct: 85 RKVDKNTDEVYAQISLMP--------DTTEVMTHNTTMDTRRPIVYFFSKILTASDVSLS 136
Query: 126 GGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTG--WS 183
GG +P+ A FP LD + Q +VAKD++G+ W F+H++RGTP+RH+ T+G WS
Sbjct: 137 GGLIIPKQYAIECFPPLDMSQPISTQNLVAKDLYGQEWSFKHVFRGTPQRHMFTSGGGWS 196
Query: 184 TFVNQKKLVAGDSIVFLRAQDGDL 207
F K+L+ GD V LR ++G+L
Sbjct: 197 VFATTKRLIVGDIFVLLRGENGEL 220
Score = 106 (42.4 bits), Expect = 2.8e-41, Sum P(4) = 2.8e-41
Identities = 29/79 (36%), Positives = 40/79 (50%)
Query: 336 KMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVE 395
+M FE +D S + GTI V P W +S WR L+V WDE +VSPW +E
Sbjct: 269 RMQFEGKDFSE-KRYDGTIIGVNDMSP-HWKDSEWRSLKVQWDELSPFLRPNQVSPWDIE 326
Query: 396 LVSNMPVIHLSPFSPARKK 414
+ +P +S S +KK
Sbjct: 327 HL--IPSSDISQSSLKKKK 343
Score = 92 (37.4 bits), Expect = 2.8e-41, Sum P(4) = 2.8e-41
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 616 KVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIE---RSDMLSHVLYQDASGAIKRTGD 672
KV ++ + R +DL+ + Y +L ++L +F ++ R+ +++ + GA GD
Sbjct: 437 KVHMQGVAISRAVDLTAMHGYNQLIQKLEELFDLKDELRTRNQWEIVFTNNEGAEMLVGD 496
Query: 673 EPFSDFMKSAKRLTI 687
+P+ +F AKR+ I
Sbjct: 497 DPWPEFCNMAKRIFI 511
Score = 43 (20.2 bits), Expect = 3.5e-34, Sum P(3) = 3.5e-34
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 455 GIQGARHAQFGISSSDFHVNNKLQSGLFLSSLQRF 489
GI+ A+H Q I SS N +Q G+ S + F
Sbjct: 223 GIRRAKHQQGHIPSSVISANC-MQHGVIASVVNAF 256
Score = 38 (18.4 bits), Expect = 2.8e-41, Sum P(4) = 2.8e-41
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 458 GARHAQFGISSSDFHVNNKLQSGLFLSSL 486
G R IS +F N ++ FLS L
Sbjct: 365 GQRSMNSPISVPEFSYPNAIEDSKFLSGL 393
>TAIR|locus:2037169 [details] [associations]
symbol:ARF23 "auxin response factor 23" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;TAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0009734 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
HOGENOM:HOG000241141 EMBL:AC022314 IPI:IPI00526589 PIR:E96503
RefSeq:NP_175062.1 UniGene:At.52022 ProteinModelPortal:Q9LP07
SMR:Q9LP07 EnsemblPlants:AT1G43950.1 GeneID:840994
KEGG:ath:AT1G43950 GeneFarm:3427 TAIR:At1g43950 OMA:PTENENQ
PhylomeDB:Q9LP07 Genevestigator:Q9LP07 GermOnline:AT1G43950
Uniprot:Q9LP07
Length = 222
Score = 317 (116.6 bits), Expect = 1.4e-27, P = 1.4e-27
Identities = 76/204 (37%), Positives = 102/204 (50%)
Query: 11 QLWHACAGSMVQIPPLNSTVFYFPQGHAEHSLGSVN-----FPSSSRIPPLIFCRVSSLK 65
QLW CAG + IP L V+YFPQGH E S + +P + CRV ++
Sbjct: 27 QLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNCDLPSKLQCRVIAIH 86
Query: 66 FLADSETDEVYAKIKLVPIPANEIDFEDNNLSLNSVGSDSESEKPASFAKTLTQSDANNG 125
++ +DE Y +I L+P + +N + + SF K LT SD +
Sbjct: 87 LKVENNSDETYVEITLMPDTTQVVIPTENENQFRPIVN--------SFTKVLTASDTSAQ 138
Query: 126 GGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTF 185
G FSVP A P LD + P Q ++A D+HG W+F+H YR PR TTGW+ F
Sbjct: 139 GEFSVPCKHAIECLPPLDMSQPIPAQELIAIDLHGNQWRFKHSYR-VPRGD--TTGWNAF 195
Query: 186 VNQKKLVAGDSIVFLRAQDGDLCV 209
KKLV GD IVF R + G+L V
Sbjct: 196 TTSKKLVVGDVIVFARGETGELRV 219
>TAIR|locus:2085969 [details] [associations]
symbol:EDF3 "ethylene response DNA binding factor 3"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0009691 "cytokinin biosynthetic
process" evidence=RCA] InterPro:IPR001471 InterPro:IPR003340
InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863
PROSITE:PS51032 SMART:SM00380 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009873 EMBL:AB028607
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 Gene3D:3.30.730.10
SUPFAM:SSF54171 HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484
KO:K09287 ProtClustDB:CLSN2682511 EMBL:AJ441073 EMBL:AK229415
EMBL:AY087951 IPI:IPI00523797 RefSeq:NP_189201.1 UniGene:At.37331
ProteinModelPortal:Q9LS06 SMR:Q9LS06 EnsemblPlants:AT3G25730.1
GeneID:822164 KEGG:ath:AT3G25730 TAIR:At3g25730 InParanoid:Q9LS06
OMA:NAHSKSE Genevestigator:Q9LS06 Uniprot:Q9LS06
Length = 333
Score = 167 (63.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 36/96 (37%), Positives = 57/96 (59%)
Query: 113 FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVA--KDVHGEIWKFRHIYR 170
F KT+T SD +P++ AE FP + V+ ++ +DV+G++W+FR+ Y
Sbjct: 183 FEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYW 242
Query: 171 GTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGD 206
+ + ++LT GWS FV +K+L AGD I F R+ D D
Sbjct: 243 NSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQD 278
>TAIR|locus:2039165 [details] [associations]
symbol:ABS2 "ABNORMAL SHOOT 2" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0009062 "fatty
acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0080167 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 EMBL:AC007017 EMBL:AC007135
HSSP:Q9ZWM9 HOGENOM:HOG000239355 EMBL:AK117587 EMBL:AJ441075
IPI:IPI00522172 IPI:IPI00531123 PIR:F84776 RefSeq:NP_181152.2
RefSeq:NP_850260.1 UniGene:At.23308 ProteinModelPortal:Q8GYJ2
SMR:Q8GYJ2 PaxDb:Q8GYJ2 EnsemblPlants:AT2G36080.1 GeneID:818181
KEGG:ath:AT2G36080 TAIR:At2g36080 eggNOG:NOG253490
InParanoid:Q8GYJ2 OMA:AQAVESQ PhylomeDB:Q8GYJ2
ProtClustDB:CLSN2680069 Genevestigator:Q8GYJ2 Uniprot:Q8GYJ2
Length = 244
Score = 158 (60.7 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 38/106 (35%), Positives = 57/106 (53%)
Query: 103 SDSESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVA--KDVHG 160
+D EK A F K LT SD +P+ AE FP AD + ++ +D G
Sbjct: 28 NDVVEEKEALFEKPLTPSDVGKLNRLVIPKQHAERYFPLAAAAADAVEKGLLLCFEDEEG 87
Query: 161 EIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQ-DG 205
+ W+FR+ Y + + ++LT GWS +V +K L AGD ++F R + DG
Sbjct: 88 KPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVLFHRHRSDG 133
>TAIR|locus:2205319 [details] [associations]
symbol:RAV1 "related to ABI3/VP1 1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS] [GO:0009741 "response to
brassinosteroid stimulus" evidence=IEP] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0048366 "leaf
development" evidence=IMP] [GO:0048527 "lateral root development"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0009963 "positive regulation of
flavonoid biosynthetic process" evidence=RCA] [GO:0010363
"regulation of plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001471 InterPro:IPR003340 InterPro:IPR016177
Pfam:PF00847 Pfam:PF02362 PROSITE:PS50863 PROSITE:PS51032
SMART:SM00380 SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0045892 EMBL:AC011810 GO:GO:0009873
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0048527
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0009910 GO:GO:0048366
GO:GO:0009741 EMBL:AB013886 EMBL:AY063855 EMBL:AY091291
IPI:IPI00544013 PIR:T51329 RefSeq:NP_172784.1 UniGene:At.20558
PDB:1WID PDBsum:1WID ProteinModelPortal:Q9ZWM9 SMR:Q9ZWM9
STRING:Q9ZWM9 EnsemblPlants:AT1G13260.1 GeneID:837886
KEGG:ath:AT1G13260 TAIR:At1g13260 eggNOG:NOG266118
HOGENOM:HOG000237484 InParanoid:Q9ZWM9 KO:K09287 OMA:ICETPAI
PhylomeDB:Q9ZWM9 ProtClustDB:CLSN2682511 EvolutionaryTrace:Q9ZWM9
Genevestigator:Q9ZWM9 GermOnline:AT1G13260 Uniprot:Q9ZWM9
Length = 344
Score = 161 (61.7 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 39/115 (33%), Positives = 64/115 (55%)
Query: 94 NNLSLNSVGSDSESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTV 153
+ LS + V + A F K +T SD +P++ AE FP L +++ V+ V
Sbjct: 169 SGLSNDGVSTTGFRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFP-LP-SSNVSVKGV 226
Query: 154 VA--KDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGD 206
+ +DV+G++W+FR+ Y + + ++LT GWS FV +K L AGD + F R+ D
Sbjct: 227 LLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQD 281
>TAIR|locus:2117007 [details] [associations]
symbol:NGA4 "NGATHA4" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AF096370 EMBL:AL161492 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:FJ873734 EMBL:BT029520 EMBL:AB493670 IPI:IPI00543194
PIR:T01944 RefSeq:NP_192059.4 UniGene:At.34418
ProteinModelPortal:O82595 SMR:O82595 STRING:O82595 PRIDE:O82595
EnsemblPlants:AT4G01500.1 GeneID:826750 KEGG:ath:AT4G01500
TAIR:At4g01500 eggNOG:NOG287578 InParanoid:O82595 OMA:YSSERRE
Genevestigator:O82595 Uniprot:O82595
Length = 333
Score = 156 (60.0 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 36/98 (36%), Positives = 55/98 (56%)
Query: 105 SESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVA-KDVHGEIW 163
S + F K LT SD +P+ AE FP L+ D TV+ +D +G++W
Sbjct: 28 SSERREHMFDKVLTPSDVGKLNRLVIPKQHAENFFP-LE---DNQNGTVLDFQDKNGKMW 83
Query: 164 KFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR 201
+FR+ Y + + +++T GWS FV +KKL AGD++ F R
Sbjct: 84 RFRYSYWNSSQSYVMTKGWSRFVKEKKLFAGDTVSFYR 121
>TAIR|locus:2200950 [details] [associations]
symbol:NGA3 "NGATHA3" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
HSSP:Q9ZWM9 EMBL:AC007323 eggNOG:NOG237610 HOGENOM:HOG000239355
EMBL:BX814729 IPI:IPI00536920 PIR:B86141 RefSeq:NP_171611.1
UniGene:At.49492 ProteinModelPortal:Q9MAN1 SMR:Q9MAN1 STRING:Q9MAN1
PRIDE:Q9MAN1 EnsemblPlants:AT1G01030.1 GeneID:839321
KEGG:ath:AT1G01030 TAIR:At1g01030 InParanoid:Q9MAN1 OMA:RNIVGSE
PhylomeDB:Q9MAN1 ProtClustDB:CLSN2912766 Genevestigator:Q9MAN1
Uniprot:Q9MAN1
Length = 358
Score = 156 (60.0 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 37/109 (33%), Positives = 59/109 (54%)
Query: 93 DNNLSLNSVGSDSESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQT 152
+NNL + + EK F K +T SD +P+ AE FP LD + +
Sbjct: 39 NNNLPMMMI---PPPEKEHMFDKVVTPSDVGKLNRLVIPKQHAERYFP-LDSSNNQNGTL 94
Query: 153 VVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR 201
+ +D +G++W+FR+ Y + + +++T GWS FV +KKL AGD + F R
Sbjct: 95 LNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQR 143
>TAIR|locus:2041404 [details] [associations]
symbol:NGA1 "NGATHA1" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 EMBL:AC004411
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
GO:GO:0009908 GO:GO:0048366 EMBL:AC005310 HSSP:Q9ZWM9 EMBL:AK118045
EMBL:BT008534 IPI:IPI00537675 PIR:T02200 RefSeq:NP_566089.1
UniGene:At.36441 ProteinModelPortal:O82799 SMR:O82799 IntAct:O82799
STRING:O82799 EnsemblPlants:AT2G46870.1 GeneID:819300
KEGG:ath:AT2G46870 TAIR:At2g46870 eggNOG:NOG237610
HOGENOM:HOG000239355 InParanoid:O82799 OMA:MECGESG PhylomeDB:O82799
ProtClustDB:CLSN2682823 Genevestigator:O82799 Uniprot:O82799
Length = 310
Score = 153 (58.9 bits), Expect = 6.6e-08, P = 6.6e-08
Identities = 35/105 (33%), Positives = 57/105 (54%)
Query: 102 GSDSESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGE 161
G+ +++ F K +T SD +P+ AE FP LD +++ + +D+ G+
Sbjct: 24 GAREVADREHMFDKVVTPSDVGKLNRLVIPKQHAERFFP-LDSSSNEKGLLLNFEDLTGK 82
Query: 162 IWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGD 206
W+FR+ Y + + +++T GWS FV KKL AGD + F R GD
Sbjct: 83 SWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRCV-GD 126
>TAIR|locus:2012438 [details] [associations]
symbol:RAV2 "related to ABI3/VP1 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0010167 "response to nitrate"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0015706 "nitrate transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0045892
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 EMBL:AC011914 EMBL:AC011665
HSSP:Q9ZWM9 eggNOG:NOG266118 HOGENOM:HOG000237484 KO:K09287
ProtClustDB:CLSN2682511 EMBL:AB013887 EMBL:AF360312 EMBL:AY056361
EMBL:AY085908 EMBL:AF003101 IPI:IPI00548727 PIR:T51330
RefSeq:NP_001185352.1 RefSeq:NP_564947.1 UniGene:At.25344
ProteinModelPortal:P82280 SMR:P82280 DIP:DIP-59694N STRING:P82280
PaxDb:P82280 PRIDE:P82280 EnsemblPlants:AT1G68840.1
EnsemblPlants:AT1G68840.2 GeneID:843216 KEGG:ath:AT1G68840
TAIR:At1g68840 InParanoid:P82280 OMA:MDSSCID PhylomeDB:P82280
Genevestigator:P82280 Uniprot:P82280
Length = 352
Score = 148 (57.2 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 33/92 (35%), Positives = 52/92 (56%)
Query: 113 FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVA--KDVHGEIWKFRHIYR 170
F K +T SD +P+ AE FP L + + V+ +DV+G++W+FR+ Y
Sbjct: 188 FEKAVTPSDVGKLNRLVIPKQHAEKHFP-LPSPSPAVTKGVLINFEDVNGKVWRFRYSYW 246
Query: 171 GTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA 202
+ + ++LT GWS FV +K L AGD + F R+
Sbjct: 247 NSSQSYVLTKGWSRFVKEKNLRAGDVVTFERS 278
>TAIR|locus:2031185 [details] [associations]
symbol:TEM1 "TEMPRANILLO 1" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=IEA;NAS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0009873 "ethylene mediated signaling pathway" evidence=NAS]
[GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001471
InterPro:IPR003340 InterPro:IPR016177 Pfam:PF00847 Pfam:PF02362
PROSITE:PS50863 PROSITE:PS51032 SMART:SM00380 SMART:SM01019
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 EMBL:AC079281
GO:GO:0009873 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936
Gene3D:3.30.730.10 SUPFAM:SSF54171 GO:GO:0048573 HSSP:Q9ZWM9
HOGENOM:HOG000237484 KO:K09287 ProtClustDB:CLSN2682511
EMBL:AY091069 EMBL:AY122941 IPI:IPI00518546 PIR:A86386
RefSeq:NP_173927.1 UniGene:At.17318 ProteinModelPortal:Q9C6M5
SMR:Q9C6M5 DIP:DIP-59693N PaxDb:Q9C6M5 PRIDE:Q9C6M5
EnsemblPlants:AT1G25560.1 GeneID:839143 KEGG:ath:AT1G25560
TAIR:At1g25560 eggNOG:NOG250438 InParanoid:Q9C6M5 OMA:NDVAVEC
PhylomeDB:Q9C6M5 Genevestigator:Q9C6M5 Uniprot:Q9C6M5
Length = 361
Score = 148 (57.2 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 40/125 (32%), Positives = 64/125 (51%)
Query: 90 DFEDNNLSLNSVGSDSESE-KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTA-- 146
D + + L + G+D+ + F KT+T SD +P+ AE FP T
Sbjct: 171 DGKRSGLETATYGNDAVLRAREVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAM 230
Query: 147 --DP-PVQTVVA--KDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR 201
+P P + V+ +D G++W+FR+ Y + + ++LT GWS FV +K L AGD + F R
Sbjct: 231 GMNPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFER 290
Query: 202 AQDGD 206
+ D
Sbjct: 291 STGPD 295
>UNIPROTKB|Q5VRR0 [details] [associations]
symbol:IAA20 "Auxin-responsive protein IAA20" species:39947
"Oryza sativa Japonica Group" [GO:0009733 "response to auxin
stimulus" evidence=IC] InterPro:IPR003311 InterPro:IPR011525
Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0006355 GO:GO:0006351 HOGENOM:HOG000238261
EMBL:AB023482 EMBL:AP002536 EMBL:AK102541 RefSeq:NP_001056915.2
UniGene:Os.15798 STRING:Q5VRR0 EnsemblPlants:LOC_Os06g07040.1
GeneID:4340245 KEGG:dosa:Os06t0166500-01 KEGG:osa:4340245
Gramene:Q5VRR0 eggNOG:NOG246219 OMA:KCARRRS ProtClustDB:CLSN2695987
Uniprot:Q5VRR0
Length = 183
Score = 132 (51.5 bits), Expect = 4.6e-07, P = 4.6e-07
Identities = 36/91 (39%), Positives = 48/91 (52%)
Query: 607 ESGLDTGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMF-------GIERSDMLSH-V 658
+ G G+ KV +E +GR LDLS+L SY EL L +MF G +R + V
Sbjct: 93 DGGCGGGYVKVKMEGLAIGRKLDLSILGSYAELLDTLHLMFPSTNQEDGHDRRRRHPYAV 152
Query: 659 LYQDASGAIKRTGDEPFSDFMKSAKRLTILM 689
Y+D G + GD P+ F KS KRL IL+
Sbjct: 153 TYEDGEGDWMQVGDVPWEAFAKSVKRLKILV 183
>TAIR|locus:2079537 [details] [associations]
symbol:NGA2 "NGATHA2" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009908
"flower development" evidence=IMP] [GO:0048366 "leaf development"
evidence=IMP] InterPro:IPR003340 Pfam:PF02362 PROSITE:PS50863
SMART:SM01019 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10
InterPro:IPR015300 SUPFAM:SSF101936 GO:GO:0009908 GO:GO:0048366
EMBL:AL138642 HSSP:Q9ZWM9 HOGENOM:HOG000239355
ProtClustDB:CLSN2682823 EMBL:AK117646 EMBL:BT025866 EMBL:AY085197
IPI:IPI00523321 PIR:T47989 RefSeq:NP_191756.1 UniGene:At.34201
ProteinModelPortal:Q9M268 SMR:Q9M268 EnsemblPlants:AT3G61970.1
GeneID:825370 KEGG:ath:AT3G61970 TAIR:At3g61970 eggNOG:NOG273145
InParanoid:Q9M268 OMA:SSSMERE PhylomeDB:Q9M268
Genevestigator:Q9M268 Uniprot:Q9M268
Length = 299
Score = 145 (56.1 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 36/112 (32%), Positives = 54/112 (48%)
Query: 92 EDNNLSLNSVGSDSESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQ 151
ED + S E E F K +T SD +P+ AE FP + T + +
Sbjct: 4 EDKEKPIEEASSSMEREH--MFDKVVTPSDVGKLNRLVIPKQHAERYFPLDNSTTNDSNK 61
Query: 152 TVVA--KDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR 201
++ +D G W+FR+ Y + + +++T GWS FV KKL AGD + F R
Sbjct: 62 GLLLNFEDRSGNSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQR 113
>TAIR|locus:2090527 [details] [associations]
symbol:IAA31 "indole-3-acetic acid inducible 31"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=TAS] [GO:0009630 "gravitropism"
evidence=IMP] [GO:0048364 "root development" evidence=IMP]
[GO:0048367 "shoot system development" evidence=IMP]
InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 GO:GO:0048364
GO:GO:0009630 GO:GO:0022621 EMBL:AB022219 HOGENOM:HOG000005696
EMBL:AY054274 EMBL:BT000543 IPI:IPI00540266 RefSeq:NP_188387.1
UniGene:At.22356 IntAct:Q8H174 EnsemblPlants:AT3G17600.1
GeneID:821026 KEGG:ath:AT3G17600 GeneFarm:3238 TAIR:At3g17600
eggNOG:NOG267119 InParanoid:Q8H174 OMA:KITRPER PhylomeDB:Q8H174
ProtClustDB:CLSN2913488 Genevestigator:Q8H174 GermOnline:AT3G17600
Uniprot:Q8H174
Length = 158
Score = 125 (49.1 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 46/151 (30%), Positives = 63/151 (41%)
Query: 546 QISHSCSDDVVSQVLGKSSSDGHSDKVKASSDGSGSTHEQRXXXXXXXXXXXXWNRSFQ- 604
++S+SCS S V S S + S ST QR + +
Sbjct: 2 EVSNSCSSFSSSSVDSTKPSPSESSVNLSLSLTFPSTSPQREARQDWPPIKSRLRDTLKG 61
Query: 605 --VTESGLDTG-HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIE----RSDMLSH 657
+ G DT KV++E +GR LDL V S YE L L+ MF D H
Sbjct: 62 RRLLRRGDDTSLFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSIICGNRDRKHH 121
Query: 658 VL-YQDASGAIKRTGDEPFSDFMKSAKRLTI 687
VL Y+D G GD P+ F+++ +RL I
Sbjct: 122 VLTYEDKDGDWMMVGDIPWDMFLETVRRLKI 152
>TAIR|locus:2080782 [details] [associations]
symbol:AT3G11580 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009062
"fatty acid catabolic process" evidence=RCA] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 EMBL:AC008153 HSSP:Q9ZWM9 HOGENOM:HOG000239355
EMBL:AJ441076 EMBL:AK175281 EMBL:BT029371 IPI:IPI00539345
IPI:IPI00547561 RefSeq:NP_187765.2 RefSeq:NP_850559.1
UniGene:At.39724 ProteinModelPortal:Q8RYD3 SMR:Q8RYD3
EnsemblPlants:AT3G11580.1 GeneID:820331 KEGG:ath:AT3G11580
TAIR:At3g11580 eggNOG:NOG285931 InParanoid:Q8RYD3 OMA:CHGDAVE
PhylomeDB:Q8RYD3 ProtClustDB:CLSN2918062 Genevestigator:Q8RYD3
Uniprot:Q8RYD3
Length = 267
Score = 127 (49.8 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 37/120 (30%), Positives = 58/120 (48%)
Query: 94 NNLSLNSVGSDSES--EKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDY-----TA 146
N LSL+ + + ++ + F K+LT SD +P+ AE FP + +
Sbjct: 8 NTLSLHHHHQNDVAIAQRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSG 67
Query: 147 DPPVQT-----VVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR 201
D T + +D G+ WKFR+ Y + + ++LT GWS +V K L AGD + F R
Sbjct: 68 DDVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQR 127
>TAIR|locus:2164215 [details] [associations]
symbol:DPA4 "DEVELOPMENT-RELATED PcG TARGET IN THE APEX
4" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0009062 "fatty acid catabolic
process" evidence=RCA] [GO:0010073 "meristem maintenance"
evidence=IMP] [GO:0010358 "leaf shaping" evidence=IGI] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IMP]
[GO:0048366 "leaf development" evidence=IGI] InterPro:IPR003340
Pfam:PF02362 PROSITE:PS50863 SMART:SM01019 GO:GO:0005634
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 Gene3D:2.40.330.10 InterPro:IPR015300
SUPFAM:SSF101936 GO:GO:0010073 EMBL:AB006700 GO:GO:0010358
HSSP:Q9ZWM9 HOGENOM:HOG000239355 IPI:IPI00517655 IPI:IPI00891280
RefSeq:NP_001119177.1 RefSeq:NP_196243.2 UniGene:At.54745
ProteinModelPortal:Q9FNI3 SMR:Q9FNI3 EnsemblPlants:AT5G06250.2
GeneID:830512 KEGG:ath:AT5G06250 TAIR:At5g06250 eggNOG:NOG256843
InParanoid:Q9FNI3 OMA:LECQMDE PhylomeDB:Q9FNI3
ProtClustDB:CLSN2702250 Genevestigator:Q9FNI3 Uniprot:Q9FNI3
Length = 282
Score = 127 (49.8 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 32/102 (31%), Positives = 49/102 (48%)
Query: 109 KPASFAKTLTQSDANNGGGFSVPRYCAETIFP---------RLDYTADPPVQTVVAKDVH 159
K + F K+LT SD +P+ AE FP D ++ + +D
Sbjct: 42 KESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNAVLVSSAAADTSSSEKGMLLSFEDES 101
Query: 160 GEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR 201
G+ W+FR+ Y + + ++LT GWS FV K+L GD + F R
Sbjct: 102 GKSWRFRYSYWNSSQSYVLTKGWSRFVKDKQLDPGDVVFFQR 143
>TAIR|locus:2064417 [details] [associations]
symbol:HSI2 "high-level expression of sugar-inducible
gene 2" species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009737 "response to abscisic acid stimulus" evidence=TAS]
[GO:0009744 "response to sucrose stimulus" evidence=TAS]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0010030 "positive regulation of seed germination"
evidence=IGI] [GO:2000034 "regulation of seed maturation"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003340 InterPro:IPR011124 Pfam:PF02362 Pfam:PF07496
PROSITE:PS50863 PROSITE:PS51050 SMART:SM01019 GO:GO:0005739
GO:GO:0009737 GO:GO:0005634 GO:GO:0045892 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0010030
GO:GO:0009744 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
Gene3D:2.40.330.10 InterPro:IPR015300 SUPFAM:SSF101936 EMBL:U93215
HSSP:Q9ZWM9 EMBL:AB206553 EMBL:AY062492 IPI:IPI00532565 PIR:G84708
RefSeq:NP_850146.1 UniGene:At.27438 ProteinModelPortal:Q8W4L5
SMR:Q8W4L5 IntAct:Q8W4L5 STRING:Q8W4L5 PaxDb:Q8W4L5 PRIDE:Q8W4L5
EnsemblPlants:AT2G30470.1 GeneID:817597 KEGG:ath:AT2G30470
TAIR:At2g30470 eggNOG:NOG244543 HOGENOM:HOG000084353
InParanoid:Q8W4L5 OMA:CMNASCG PhylomeDB:Q8W4L5
ProtClustDB:CLSN2918136 Genevestigator:Q8W4L5 GO:GO:2000034
Uniprot:Q8W4L5
Length = 790
Score = 133 (51.9 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 46/162 (28%), Positives = 66/162 (40%)
Query: 113 FAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIY--R 170
F KTL+ SDA G +P+ CAE FP + + P++ +DV G W F+ Y
Sbjct: 295 FEKTLSASDAGRIGRLVLPKACAEAYFPPISQSEGIPLKI---QDVRGREWTFQFRYWPN 351
Query: 171 GTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRAQDGDLCVXXXXXXXXXXXXNEYPSSGWN 230
R ++L G + + L AGD++ F R G + +
Sbjct: 352 NNSRMYVLE-GVTPCIQSMMLQAGDTVTFSRVDPGGKLIMGSRKAANAGDMQGCGLTNGT 410
Query: 231 SN---NGSCVTGNP--FGGFSCF--LREEENKMARNGNMNLN 265
S + S VT NP G SC + +E N M N N N
Sbjct: 411 STEDTSSSGVTENPPSINGSSCISLIPKELNGMPENLNSETN 452
>TAIR|locus:2041324 [details] [associations]
symbol:IAA20 "indole-3-acetic acid inducible 20"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IEA;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0046983 "protein dimerization
activity" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0009733 "response
to auxin stimulus" evidence=IEP;TAS] [GO:0009630 "gravitropism"
evidence=IMP] [GO:0009647 "skotomorphogenesis" evidence=IMP]
[GO:0010588 "cotyledon vascular tissue pattern formation"
evidence=IMP] [GO:0048364 "root development" evidence=IMP]
InterPro:IPR003311 InterPro:IPR011525 Pfam:PF02309 PROSITE:PS50962
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009733
GO:GO:0009734 GO:GO:0003700 GO:GO:0006351 GO:GO:0048364
EMBL:AC004411 GO:GO:0009630 GO:GO:0009647 GO:GO:0010588
EMBL:AK117233 EMBL:AF348576 EMBL:U49076 IPI:IPI00547197 PIR:T02188
RefSeq:NP_182222.1 UniGene:At.10480 IntAct:O24410 STRING:O24410
DNASU:819313 EnsemblPlants:AT2G46990.1 GeneID:819313
KEGG:ath:AT2G46990 GeneFarm:3236 TAIR:At2g46990 eggNOG:NOG254610
HOGENOM:HOG000005696 InParanoid:O24410 OMA:KISRANY PhylomeDB:O24410
ProtClustDB:CLSN2683572 Genevestigator:O24410 GermOnline:AT2G46990
Uniprot:O24410
Length = 175
Score = 110 (43.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 31/83 (37%), Positives = 41/83 (49%)
Query: 614 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGI-----ERSDML---SHVL-YQDAS 664
+ KV +E +GR +DL L+ Y +L R L MF E DM SHVL Y D
Sbjct: 86 YVKVNMEGVPIGRKIDLMSLNGYRDLIRTLDFMFNASILWAEEEDMCNEKSHVLTYADKE 145
Query: 665 GAIKRTGDEPFSDFMKSAKRLTI 687
G GD P+ F+ + +RL I
Sbjct: 146 GDWMMVGDVPWEMFLSTVRRLKI 168
Score = 38 (18.4 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 451 NTSAGIQGARHAQ-FGISSSDFHVNNKLQSGL 481
++S+ I+ + + FG SSS +++ L+ GL
Sbjct: 7 SSSSSIESSSKSNPFGASSSTRNLSTDLRLGL 38
>DICTYBASE|DDB_G0285837 [details] [associations]
symbol:DDB_G0285837 "BRWD group protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR017986 InterPro:IPR001487 InterPro:IPR001680
InterPro:IPR015943 Pfam:PF00400 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS50082 PROSITE:PS50294 SMART:SM00297
SMART:SM00320 dictyBase:DDB_G0285837 Gene3D:2.130.10.10
SUPFAM:SSF50978 PROSITE:PS00678 InterPro:IPR019775 eggNOG:COG2319
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
EMBL:AAFI02000080 HSSP:Q03330 RefSeq:XP_638029.1
ProteinModelPortal:Q54MP8 EnsemblProtists:DDB0220685 GeneID:8625294
KEGG:ddi:DDB_G0285837 InParanoid:Q54MP8 OMA:DEITDIY Uniprot:Q54MP8
Length = 2200
Score = 134 (52.2 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 53/241 (21%), Positives = 101/241 (41%)
Query: 301 FEVVYYPRASTPEFCVKASAVKAAMRVHWLC-GMRFKMAFETEDSSRISWFMGTISSVQV 359
F V Y + P++ V AS V+ +M W RF+M + W+ GTI +
Sbjct: 1349 FYTVIYHVSDIPDYLVLASKVRKSMLTDWTVPNKRFRMFYPAS-----GWYNGTIIEISD 1403
Query: 360 ADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSN-----MPVIHLSPFSPARKK 414
+DP+ +PNSPW ++V WD+ + RV+ W ++ + + + + K
Sbjct: 1404 SDPL-FPNSPWENIKVLWDDTE---EEDRVNYWEIDEKFDDDQNPQKIKEIKDENENEKV 1459
Query: 415 LR--LPQQLDFPFDGQFTMPLFSGNPLGPSSPLCCLSDNTSAGIQGARHAQFGISSSDFH 472
+ QQ P P+ + L ++ ++N + + ++++ +
Sbjct: 1460 IENNQQQQQQQPQQQPQQQPIQNNQQLSINNTNVNNNNNNNNNNNNNNNNNNNNNNNNNN 1519
Query: 473 VNNKLQSGLFLSSLQRFTPNSRDFDGILTSHTNSSENLSCLLTMGNSNQNLEKSENIKKH 532
NN L GL S N+ +F+ ++N++ ++S +L N N N N +
Sbjct: 1520 NNNSLNGGLVDYSGNNNNNNNNNFN----YNSNNNLSMSGILDYTNFNNNNNNFMNYNMY 1575
Query: 533 Q 533
Q
Sbjct: 1576 Q 1576
Score = 46 (21.3 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 24 PPLNSTVFYFPQGHAEH 40
P + +FYF QGH ++
Sbjct: 1217 PQVGDFIFYFYQGHTKY 1233
>UNIPROTKB|Q6K846 [details] [associations]
symbol:IAA9 "Auxin-responsive protein IAA9" species:39947
"Oryza sativa Japonica Group" [GO:0009733 "response to auxin
stimulus" evidence=IC] InterPro:IPR003311 InterPro:IPR011525
Pfam:PF02309 PROSITE:PS50962 GO:GO:0005634 GO:GO:0009733
GO:GO:0009734 GO:GO:0006355 GO:GO:0006351 HOGENOM:HOG000238261
ProtClustDB:CLSN2695987 EMBL:AC069158 EMBL:AP004240 EMBL:AK073365
RefSeq:NP_001048437.1 UniGene:Os.23256
EnsemblPlants:LOC_Os02g56120.1 EnsemblPlants:LOC_Os02g56120.2
GeneID:4331061 KEGG:dosa:Os02t0805100-01 KEGG:osa:4331061
Gramene:Q6K846 eggNOG:NOG253641 OMA:ARSRACG Uniprot:Q6K846
Length = 182
Score = 108 (43.1 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 33/88 (37%), Positives = 45/88 (51%)
Query: 614 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMF------GIERSDMLSH-------VLY 660
+ KV E + +GR +DL++ SSY+EL LA MF G ++ H V Y
Sbjct: 94 YVKVKKEGDAIGRKVDLALHSSYDELAATLARMFPTNDHQGEKKMANDDHGDAAGPVVTY 153
Query: 661 QDASGAIKRTGDEPFSDFMKSAKRLTIL 688
+D G GD P+ DF +S KRL IL
Sbjct: 154 EDGDGDWMLVGDVPWDDFARSVKRLKIL 181
Score = 38 (18.4 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 555 VVSQVLGKSSSDGHSDKVKASSDGSG 580
VV ++ SSS G S S+ +G
Sbjct: 16 VVDELSSSSSSGGGSGSAPVSASSAG 41
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 724 686 0.00080 121 3 11 22 0.41 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 38
No. of states in DFA: 625 (66 KB)
Total size of DFA: 374 KB (2184 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 58.17u 0.09s 58.26t Elapsed: 00:00:04
Total cpu time: 58.18u 0.09s 58.27t Elapsed: 00:00:04
Start: Tue May 21 17:16:23 2013 End: Tue May 21 17:16:27 2013