Query 004896
Match_columns 724
No_of_seqs 370 out of 831
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 09:07:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 2.4E-28 8.2E-33 228.0 14.0 113 106-218 7-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 3E-17 1E-21 156.2 11.7 98 109-216 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 1.8E-14 6.2E-19 128.9 10.6 95 109-214 7-101 (104)
4 1vd2_A Protein kinase C, IOTA 94.7 0.087 3E-06 46.5 7.6 59 612-673 6-64 (89)
5 1wmh_B Partitioning defective- 94.2 0.12 4.3E-06 45.4 7.4 66 612-681 6-71 (86)
6 1na6_A Ecorii, restriction end 93.2 0.14 4.6E-06 56.0 7.2 92 110-202 18-123 (404)
7 2ktr_A Sequestosome-1; autopha 89.4 0.54 1.8E-05 43.5 6.0 62 609-673 17-95 (117)
8 1oey_A P67-PHOX, neutrophil cy 87.7 1.8 6.3E-05 37.7 7.8 70 614-688 7-79 (83)
9 2kkc_A Sequestosome-1; P62, PB 87.6 0.87 3E-05 41.1 6.0 60 612-673 5-80 (102)
10 1q1o_A Cell division control p 85.1 1.1 3.7E-05 40.3 5.2 71 612-682 5-85 (98)
11 2bkf_A Zinc-finger protein NBR 73.9 8.4 0.00029 34.0 6.9 55 614-672 8-62 (87)
12 1oey_J P40-PHOX, neutrophil cy 72.3 3.5 0.00012 37.5 4.2 56 629-690 28-83 (107)
13 1wj6_A KIAA0049 protein, RSGI 72.0 9 0.00031 34.6 6.8 62 614-681 16-77 (101)
14 1pqs_A Cell division control p 66.5 6.5 0.00022 33.7 4.5 54 629-682 7-64 (77)
15 2jng_A Cullin-7, CUL-7; P53 bi 35.8 37 0.0013 30.8 4.4 69 317-399 10-78 (105)
16 3p8d_A Medulloblastoma antigen 33.7 43 0.0015 28.1 4.2 41 325-380 3-43 (67)
17 3o27_A Putative uncharacterize 33.3 47 0.0016 28.0 4.3 35 183-217 31-66 (68)
18 3s6w_A Tudor domain-containing 32.6 40 0.0014 26.1 3.7 28 328-359 1-28 (54)
19 1e8p_A Endoglucanase, dockerin 31.6 14 0.00046 29.1 0.8 13 657-669 20-32 (46)
20 1mhn_A SurviVal motor neuron p 31.0 44 0.0015 26.5 3.7 29 327-359 2-30 (59)
21 3m7a_A Uncharacterized protein 29.4 63 0.0022 30.4 5.1 47 150-199 83-140 (140)
22 4a4f_A SurviVal of motor neuro 28.3 50 0.0017 26.7 3.7 30 326-359 6-35 (64)
23 2k75_A Uncharacterized protein 23.9 1.8E+02 0.0062 25.5 6.8 47 150-216 39-89 (106)
24 2e63_A KIAA1787 protein; struc 23.6 44 0.0015 32.3 3.0 26 188-213 115-140 (170)
25 2equ_A PHD finger protein 20-l 22.9 67 0.0023 27.1 3.6 39 327-380 8-46 (74)
26 3qii_A PHD finger protein 20; 22.5 83 0.0028 27.6 4.1 40 326-380 19-58 (85)
27 3h8z_A FragIle X mental retard 22.4 93 0.0032 29.0 4.8 60 298-358 27-90 (128)
28 2vb2_X Copper protein, cation 22.0 89 0.003 27.0 4.3 26 188-213 59-86 (88)
29 2qcp_X Cation efflux system pr 20.7 1E+02 0.0035 26.1 4.4 26 188-213 51-78 (80)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=2.4e-28 Score=227.98 Aligned_cols=113 Identities=30% Similarity=0.499 Sum_probs=103.9
Q ss_pred CCCcceEEEEecccccCCCCCceEEcccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhh
Q 004896 106 ESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTF 185 (724)
Q Consensus 106 ~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~~rrhlLTtGWs~F 185 (724)
..+..++|.|+||+|||+++++|+||+++|+.|||.++..+.++.++|.++|.+|++|+|||+||+++++|+|++||+.|
T Consensus 7 ~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~F 86 (130)
T 1wid_A 7 GRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRF 86 (130)
T ss_dssp -CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHHH
T ss_pred CCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHHH
Confidence 44566899999999999999999999999999999999876677899999999999999999999999999999999999
Q ss_pred hhccCCCCCCEEEEEEecC--CcEEEEEEEcccCC
Q 004896 186 VNQKKLVAGDSIVFLRAQD--GDLCVGIRRAKKGI 218 (724)
Q Consensus 186 V~~KkL~aGDsVvF~R~en--G~L~VGIRR~~~~~ 218 (724)
|++|+|++||+|+|++.++ +.|+|++||+....
T Consensus 87 V~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 9999999999999999874 57999999988754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.71 E-value=3e-17 Score=156.23 Aligned_cols=98 Identities=22% Similarity=0.308 Sum_probs=86.6
Q ss_pred cceEEEEecccccCCCCCceEEcccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhhhhc
Q 004896 109 KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQ 188 (724)
Q Consensus 109 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~~rrhlLTtGWs~FV~~ 188 (724)
..++|.|+||+||+.++..|.||+++++.|||..+ +.+.++|. |+.|+|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 34799999999999987789999999999999753 47788887 6999999999974 79999999999999
Q ss_pred cCCCCCCEEEEEEecCC--cEEEEEEEccc
Q 004896 189 KKLVAGDSIVFLRAQDG--DLCVGIRRAKK 216 (724)
Q Consensus 189 KkL~aGDsVvF~R~enG--~L~VGIRR~~~ 216 (724)
++|++||+|+|...++. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999998765 69999998764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.54 E-value=1.8e-14 Score=128.90 Aligned_cols=95 Identities=25% Similarity=0.405 Sum_probs=82.4
Q ss_pred cceEEEEecccccCCCCCceEEcccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhhhhc
Q 004896 109 KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQ 188 (724)
Q Consensus 109 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~~rrhlLTtGWs~FV~~ 188 (724)
..+.|.|+|+++|.. .+|.||+++++.+.+.+. ..+.++|..|++|++++.+++ .++.|++||..||++
T Consensus 7 ~~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKSS--KSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHHT--TCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCcc--ceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHH
Confidence 346899999999944 489999999988655432 378899999999999999874 578999999999999
Q ss_pred cCCCCCCEEEEEEecCCcEEEEEEEc
Q 004896 189 KKLVAGDSIVFLRAQDGDLCVGIRRA 214 (724)
Q Consensus 189 KkL~aGDsVvF~R~enG~L~VGIRR~ 214 (724)
++|++||.|+|....+..+.|-|-+.
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECS
T ss_pred cCCCCCCEEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999999874
No 4
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.69 E-value=0.087 Score=46.51 Aligned_cols=59 Identities=14% Similarity=0.186 Sum_probs=44.5
Q ss_pred cceEEEEecCceeeeeccCCCCCCHHHHHHHHHHhhCCCCcCCceeEEEEeCCCCeeecCCC
Q 004896 612 TGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDE 673 (724)
Q Consensus 612 ~~~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGD~mlvGD~ 673 (724)
..-+||+.+|.-+-=.++. --+|++|+++|.++|.+.. +-...|-|.|.|||+.-+-.+
T Consensus 6 ~vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~~-~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFDN-EQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp CEEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCCS-SCCEEEEECCSSSCCEECCSH
T ss_pred eEEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCCC-CCeEEEEEECCCCCcccccCH
Confidence 3578999999744334454 4599999999999999863 222478899999998776544
No 5
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=94.19 E-value=0.12 Score=45.37 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=51.2
Q ss_pred cceEEEEecCceeeeeccCCCCCCHHHHHHHHHHhhCCCCcCCceeEEEEeCCCCeeecCCCChhHHHhc
Q 004896 612 TGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKS 681 (724)
Q Consensus 612 ~~~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGD~mlvGD~PW~~F~~~ 681 (724)
.-.||..-+++--==.+|-+...+|++|+..|+++|.+.. ....+.|+|.+||++-+-++ ++|.+.
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~--~~f~i~Y~D~dGDLlpInnD--dnl~~A 71 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG--LDVLLGYTDAHGDLLPLTND--DSLHRA 71 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT--CCCEEEEECTTSCEEECCSH--HHHHHH
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCC--CCEEEEEECCCCCEeeecCH--HHHHHH
Confidence 3567888887632236676778899999999999999853 44588899999999998877 666543
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.24 E-value=0.14 Score=56.03 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=68.0
Q ss_pred ceEEEEecccccCCCC----CceEEcccchhhcCCCCC-CCCCCCceEEEEE--eCCCCeEEEEEEEeC------CCCce
Q 004896 110 PASFAKTLTQSDANNG----GGFSVPRYCAETIFPRLD-YTADPPVQTVVAK--DVHGEIWKFRHIYRG------TPRRH 176 (724)
Q Consensus 110 ~~~F~K~LT~SDv~~~----grfsVPk~~Ae~~FP~Ld-~~~~~p~q~L~~~--D~~G~~W~Fr~~yrg------~~rrh 176 (724)
-..|+|.|++.|++.+ .+|.+|+..+..+||.|+ .....|.+.+.+. |...-++.++.+|.+ +...|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 4789999999999854 379999987999999998 3344566665543 443445599999997 45678
Q ss_pred eeccch-hhhhhccCCCCCCEEEEEEe
Q 004896 177 LLTTGW-STFVNQKKLVAGDSIVFLRA 202 (724)
Q Consensus 177 lLTtGW-s~FV~~KkL~aGDsVvF~R~ 202 (724)
.||. | ..+.-.....+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 8873 2 23455577889999999865
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=89.43 E-value=0.54 Score=43.49 Aligned_cols=62 Identities=16% Similarity=0.318 Sum_probs=43.9
Q ss_pred CCccceEEEEecC-----ceeeeeccCC-----------CCCCHHHHHHHHHHhh-CCCCcCCceeEEEEeCCCCeeecC
Q 004896 609 GLDTGHCKVFLES-----EDVGRTLDLS-----------VLSSYEELYRRLAIMF-GIERSDMLSHVLYQDASGAIKRTG 671 (724)
Q Consensus 609 ~~~~~~~KV~meG-----~~vGR~vDLs-----------~~~sY~eL~~~L~~MF-~i~~~~l~~~v~Y~D~eGD~mlvG 671 (724)
...+..||++..| ..| |.+-|. ...+|++|+..+.++| .+.+. ...+.|+|.|||+.-+-
T Consensus 17 ~~~~l~vKayl~~~~~~~~EI-RRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~--~f~l~YkDEdGDlItIS 93 (117)
T 2ktr_A 17 HMGSLTVKAYLLGKEEAAREI-RRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPG--GFQAHYRAERGDLVAFS 93 (117)
T ss_dssp ---CEEEEEEEECSSSCEEEE-EEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSS--CEEEEEECTTCCEEEEC
T ss_pred ccccEEEEEEEecCCCCCCcE-EEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCC--cEEEEEECCCCCEEEec
Confidence 3445788999974 334 433332 2469999999999999 45542 36889999999998887
Q ss_pred CC
Q 004896 672 DE 673 (724)
Q Consensus 672 D~ 673 (724)
.+
T Consensus 94 sD 95 (117)
T 2ktr_A 94 SD 95 (117)
T ss_dssp SH
T ss_pred CH
Confidence 66
No 8
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=87.66 E-value=1.8 Score=37.69 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=56.6
Q ss_pred eEEEEecCceeeeeccCCCCCCHHHHHHHHHHhhCCCCcCCceeEEEEe-CCCCeeecCCCChhHHHhcee--EEEEe
Q 004896 614 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQD-ASGAIKRTGDEPFSDFMKSAK--RLTIL 688 (724)
Q Consensus 614 ~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D-~eGD~mlvGD~PW~~F~~~vk--Rl~I~ 688 (724)
-+||+-+ .--+|....=-+|.+|.+.|.+=+.+..++ .++-|+| .+|.+++.+|+=++.=...|+ ||+++
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~--~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL~ 79 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH--TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTLW 79 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG--CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEEE
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcce--eEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEEE
Confidence 4577776 567788888889999999999999987533 3778999 688888999999998888754 77775
No 9
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=87.63 E-value=0.87 Score=41.11 Aligned_cols=60 Identities=17% Similarity=0.230 Sum_probs=42.8
Q ss_pred cceEEEEecCc----eeeeeccCC-----------CCCCHHHHHHHHHHhhC-CCCcCCceeEEEEeCCCCeeecCCC
Q 004896 612 TGHCKVFLESE----DVGRTLDLS-----------VLSSYEELYRRLAIMFG-IERSDMLSHVLYQDASGAIKRTGDE 673 (724)
Q Consensus 612 ~~~~KV~meG~----~vGR~vDLs-----------~~~sY~eL~~~L~~MF~-i~~~~l~~~v~Y~D~eGD~mlvGD~ 673 (724)
+..||++..|. .-=|.+-|. ...+|++|+..+.++|. +.+ -...+.|.|.|||+.-+.++
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~--~~f~l~Y~DedGDlItiSsD 80 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRP--GGFQAHYRAERGDLVAFSSD 80 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS--SCEEEEEECTTCCEEEECSH
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCC--CcEEEEEECCCCCEEEecCH
Confidence 35678888752 223444332 23589999999999996 443 23688999999999988876
No 10
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=85.09 E-value=1.1 Score=40.31 Aligned_cols=71 Identities=11% Similarity=0.184 Sum_probs=51.6
Q ss_pred cceEEEEecCce----e--eeeccCCCCCCHHHHHHHHHHhhCCC-CcCC--ceeEEEEeCCCCeeecCCC-ChhHHHhc
Q 004896 612 TGHCKVFLESED----V--GRTLDLSVLSSYEELYRRLAIMFGIE-RSDM--LSHVLYQDASGAIKRTGDE-PFSDFMKS 681 (724)
Q Consensus 612 ~~~~KV~meG~~----v--GR~vDLs~~~sY~eL~~~L~~MF~i~-~~~l--~~~v~Y~D~eGD~mlvGD~-PW~~F~~~ 681 (724)
...+||+-++.. + -|+|=+..-=+|++|+.++.+=|++. ..+. ..++-|+|.|||+..++++ =|++=+.+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 356788877421 2 36777777889999999999999864 3232 3478899999999888765 56665555
Q ss_pred e
Q 004896 682 A 682 (724)
Q Consensus 682 v 682 (724)
+
T Consensus 85 ~ 85 (98)
T 1q1o_A 85 L 85 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=73.86 E-value=8.4 Score=33.97 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=42.7
Q ss_pred eEEEEecCceeeeeccCCCCCCHHHHHHHHHHhhCCCCcCCceeEEEEeCCCCeeecCC
Q 004896 614 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGD 672 (724)
Q Consensus 614 ~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGD~mlvGD 672 (724)
-.||.-.|+..-=-|.-..--++++|...+..+|++.. .+|.|.|.|||-.-|=-
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~----~~ikY~DEenD~v~i~S 62 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT----IQIKYLDEENEEVSINS 62 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS----EEEEEECTTSCEEEECS
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc----eEEEEEcCCCCEEEEec
Confidence 45899999743223544447789999999999999985 58889999999877643
No 12
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=72.34 E-value=3.5 Score=37.49 Aligned_cols=56 Identities=23% Similarity=0.223 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHhhCCCCcCCceeEEEEeCCCCeeecCCCChhHHHhceeEEEEecC
Q 004896 629 DLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMG 690 (724)
Q Consensus 629 DLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGD~mlvGD~PW~~F~~~vkRl~I~~~ 690 (724)
||+.--+|++|.....+-|.-+. -.+-|+|.|||+.-+=|+ ++--=|+++-++++.
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~D----IaLNYrD~eGDLIrildd--eDv~lmi~~sr~~~s 83 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRED----IALNYRDAEGDLVRLLSD--EDVALMVRQARGLPS 83 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCSS----EEEEEECTTSCEEECCSH--HHHHHHHHHCCCCCC
T ss_pred ccccCCCHHHHHHHHHHHhcccc----eeeeeecCCCCEEEEcch--HHHHHHHHHhhcCcc
Confidence 78888999999999999999664 356699999999888776 555556666555443
No 13
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=72.02 E-value=9 Score=34.63 Aligned_cols=62 Identities=8% Similarity=0.148 Sum_probs=46.9
Q ss_pred eEEEEecCceeeeeccCCCCCCHHHHHHHHHHhhCCCCcCCceeEEEEeCCCCeeecCCCChhHHHhc
Q 004896 614 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKS 681 (724)
Q Consensus 614 ~~KV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGD~mlvGD~PW~~F~~~ 681 (724)
-.||.-.|+..-=-|.-..--++++|...+..+|++.. .+|.|.|.|||-.-|=- ..+|-..
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~----~~IkY~DEenD~V~i~S--q~E~eEA 77 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT----IQIKYLDEENEEVSINS--QGEYEEA 77 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS----BCCEEECTTSCEECCCS--HHHHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc----eEEEEecCCCCEEEEec--HHHHHHH
Confidence 45999999743323644557789999999999999985 48889999999987743 4555433
No 14
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=66.46 E-value=6.5 Score=33.72 Aligned_cols=54 Identities=11% Similarity=0.223 Sum_probs=38.3
Q ss_pred cCCCCCCHHHHHHHHHHhhCCCC-cC--CceeEEEEeCCCCeeecCCC-ChhHHHhce
Q 004896 629 DLSVLSSYEELYRRLAIMFGIER-SD--MLSHVLYQDASGAIKRTGDE-PFSDFMKSA 682 (724)
Q Consensus 629 DLs~~~sY~eL~~~L~~MF~i~~-~~--l~~~v~Y~D~eGD~mlvGD~-PW~~F~~~v 682 (724)
=...-=+|++|+.++.+=|++.. .+ -..++-|+|.|||+..++++ =|.+=+.++
T Consensus 7 ~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 7 LVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp ECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 34445579999999999999641 11 12478899999999877655 566666554
No 15
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=35.85 E-value=37 Score=30.84 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=45.3
Q ss_pred ehHHHHHHHhcccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCccccCCCCcccceeeee
Q 004896 317 KASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 396 (724)
Q Consensus 317 ~~~~y~~A~~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIE~ 396 (724)
+++.|-.=++.+..+|||+||.=.-|+-+.. =.|++. ++ .+- -| ..||.|..... .-.|+-=.||+
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~G--D~G~vl-~s-~~G--l~-----~vQv~W~~~G~---TyWV~~~~~El 75 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISAG--DEGEFR-QS-NNG--VP-----PVQVFWESTGR---TYWVHWHMLEI 75 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCTT--CEEEEE-EE-CTT--SS-----EEEEEETTTTE---EEEEEGGGEEE
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhccC--CceeEE-ec-CCC--Cc-----cceeeehhcCc---eEEEEeehhhh
Confidence 4677888889999999999998554554432 267777 32 222 12 78999997652 44555445666
Q ss_pred ccC
Q 004896 397 VSN 399 (724)
Q Consensus 397 v~~ 399 (724)
+..
T Consensus 76 lg~ 78 (105)
T 2jng_A 76 LGF 78 (105)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 16
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=33.68 E-value=43 Score=28.06 Aligned_cols=41 Identities=7% Similarity=0.199 Sum_probs=32.1
Q ss_pred HhcccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCc
Q 004896 325 MRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEP 380 (724)
Q Consensus 325 ~~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~ 380 (724)
|-..|.+|+++--++ ++- +||-+||.+|... ....|.+++.
T Consensus 3 ~~~~~~vGd~vmArW-~D~----~yYpA~I~si~~~----------~~Y~V~F~dG 43 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SDC----RFYPAKVTAVNKD----------GTYTVKFYDG 43 (67)
T ss_dssp --CCCCTTCEEEEEC-TTS----CEEEEEEEEECTT----------SEEEEEETTS
T ss_pred cCcccccCCEEEEEc-CCC----CEeeEEEEEECCC----------CeEEEEEeCC
Confidence 556899999999999 433 6999999999741 4588999983
No 17
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=33.30 E-value=47 Score=28.01 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=30.4
Q ss_pred hhhhhccCCCCCCEEEEEEec-CCcEEEEEEEcccC
Q 004896 183 STFVNQKKLVAGDSIVFLRAQ-DGDLCVGIRRAKKG 217 (724)
Q Consensus 183 s~FV~~KkL~aGDsVvF~R~e-nG~L~VGIRR~~~~ 217 (724)
.++++.-+|+.||.+...-++ +|++.+..+|-++.
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~ 66 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKEL 66 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhc
Confidence 489999999999999998864 88899999997654
No 18
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=32.60 E-value=40 Score=26.13 Aligned_cols=28 Identities=7% Similarity=0.302 Sum_probs=22.3
Q ss_pred ccccccEEEEEeecCCCCceeeeeeEEEEeec
Q 004896 328 HWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359 (724)
Q Consensus 328 ~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~ 359 (724)
.|.+|+..--.|..+. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg----~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN----KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT----EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC----CEEEEEEEEEeC
Confidence 4999999999995444 799999999863
No 19
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=31.64 E-value=14 Score=29.12 Aligned_cols=13 Identities=46% Similarity=0.509 Sum_probs=11.1
Q ss_pred eEEEEeCCCCeee
Q 004896 657 HVLYQDASGAIKR 669 (724)
Q Consensus 657 ~v~Y~D~eGD~ml 669 (724)
.|+|+|.+|+|=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4899999999954
No 20
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=31.02 E-value=44 Score=26.45 Aligned_cols=29 Identities=17% Similarity=0.436 Sum_probs=23.8
Q ss_pred cccccccEEEEEeecCCCCceeeeeeEEEEeec
Q 004896 327 VHWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359 (724)
Q Consensus 327 ~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~ 359 (724)
..|.+|+.+-..|..+. .||.++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg----~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG----CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS----CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC----CEEEEEEEEEcC
Confidence 47999999999995333 699999999964
No 21
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=29.43 E-value=63 Score=30.40 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=33.7
Q ss_pred ceEEEEEeCCCCeEEEEEEEe---------CCCCceee--ccchhhhhhccCCCCCCEEEE
Q 004896 150 VQTVVAKDVHGEIWKFRHIYR---------GTPRRHLL--TTGWSTFVNQKKLVAGDSIVF 199 (724)
Q Consensus 150 ~q~L~~~D~~G~~W~Fr~~yr---------g~~rrhlL--TtGWs~FV~~KkL~aGDsVvF 199 (724)
..++.+.|..|++=....--. ..+-+|+| ..|| +.+.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 357788888888777754211 12347887 6887 68899999999875
No 22
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=28.28 E-value=50 Score=26.68 Aligned_cols=30 Identities=10% Similarity=0.323 Sum_probs=24.9
Q ss_pred hcccccccEEEEEeecCCCCceeeeeeEEEEeec
Q 004896 326 RVHWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359 (724)
Q Consensus 326 ~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~ 359 (724)
...|.+|+.+.-.|..+. .||.++|.++..
T Consensus 6 ~~~~~vGd~c~A~~s~Dg----~wYrA~I~~v~~ 35 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG----QCYEAEIEEIDE 35 (64)
T ss_dssp SSCCCTTCEEEEECTTTS----SEEEEEEEEEET
T ss_pred CCCCCCCCEEEEEECCCC----CEEEEEEEEEcC
Confidence 458999999999995433 699999999974
No 23
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=23.92 E-value=1.8e+02 Score=25.49 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=34.8
Q ss_pred ceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhhhhccCCCCCCEEEEEEe----cCCcEEEEEEEccc
Q 004896 150 VQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA----QDGDLCVGIRRAKK 216 (724)
Q Consensus 150 ~q~L~~~D~~G~~W~Fr~~yrg~~rrhlLTtGWs~FV~~KkL~aGDsVvF~R~----enG~L~VGIRR~~~ 216 (724)
...+.+.|..| ..++..|+.. |.+||+|.+... =+|.+.+.|-|..+
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~ 89 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSSR 89 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTSE
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcEE
Confidence 35788999999 5788888653 889999999754 27777777755443
No 24
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.64 E-value=44 Score=32.26 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.3
Q ss_pred ccCCCCCCEEEEEEecCCcEEEEEEE
Q 004896 188 QKKLVAGDSIVFLRAQDGDLCVGIRR 213 (724)
Q Consensus 188 ~KkL~aGDsVvF~R~enG~L~VGIRR 213 (724)
-..|.+||.|-|++..+|+|.+.|--
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iNg 140 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVNG 140 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEESS
T ss_pred ccccCCCCEEEEEEcCCcEEEEEECC
Confidence 34678999999999999999998843
No 25
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.93 E-value=67 Score=27.12 Aligned_cols=39 Identities=8% Similarity=0.238 Sum_probs=30.6
Q ss_pred cccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCc
Q 004896 327 VHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEP 380 (724)
Q Consensus 327 ~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~ 380 (724)
..|.+|+++.-+|. +. .||.+||.+|.. + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws-Dg----~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DC----RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-SS----SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-CC----CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999996 33 699999999963 1 3467888764
No 26
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=22.50 E-value=83 Score=27.57 Aligned_cols=40 Identities=5% Similarity=0.169 Sum_probs=31.7
Q ss_pred hcccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCc
Q 004896 326 RVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEP 380 (724)
Q Consensus 326 ~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~ 380 (724)
...|.+|+++--++ ++- +||-+||.+|... ....|++++.
T Consensus 19 ~~~f~vGd~VlArW-~D~----~yYPAkI~sV~~~----------~~YtV~F~DG 58 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDC----RFYPAKVTAVNKD----------GTYTVKFYDG 58 (85)
T ss_dssp --CCCTTCEEEEEC-TTS----CEEEEEEEEECTT----------SEEEEEETTS
T ss_pred CcccccCCEEEEEe-CCC----CEeeEEEEEECCC----------CeEEEEEeCC
Confidence 45899999999999 433 6999999999752 3588999984
No 27
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=22.44 E-value=93 Score=28.96 Aligned_cols=60 Identities=7% Similarity=0.161 Sum_probs=40.3
Q ss_pred CCCEEEEEecCCCCCceEEehHHHHH----HHhcccccccEEEEEeecCCCCceeeeeeEEEEee
Q 004896 298 GKPFEVVYYPRASTPEFCVKASAVKA----AMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQ 358 (724)
Q Consensus 298 g~~F~V~Y~Pr~s~~EFvV~~~~y~~----A~~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~ 358 (724)
...+.|.|.-- ..++-.|+.+.+.- +.+..+++|+.+......+|.--..||.|+|..+.
T Consensus 27 ~d~~~V~f~n~-w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 27 EDSVTIFFENN-WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp SSEEEEEETTC-TTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CCcEEEEEccc-cCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 44588998642 12577888776552 33468999999999887666444579999999996
No 28
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=22.05 E-value=89 Score=27.00 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=18.0
Q ss_pred ccCCCCCCEEEEEEe-cCCcEEE-EEEE
Q 004896 188 QKKLVAGDSIVFLRA-QDGDLCV-GIRR 213 (724)
Q Consensus 188 ~KkL~aGDsVvF~R~-enG~L~V-GIRR 213 (724)
-++|++||.|.|.-. .+|++.| .|++
T Consensus 59 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 86 (88)
T 2vb2_X 59 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 86 (88)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 367999999999765 4556544 5543
No 29
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=20.72 E-value=1e+02 Score=26.08 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=17.9
Q ss_pred ccCCCCCCEEEEEEe-cCCcEEE-EEEE
Q 004896 188 QKKLVAGDSIVFLRA-QDGDLCV-GIRR 213 (724)
Q Consensus 188 ~KkL~aGDsVvF~R~-enG~L~V-GIRR 213 (724)
-++|++||.|.|.-. .+|++.| .|++
T Consensus 51 l~~lk~Gd~V~F~~~~~~~~~~it~i~~ 78 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQQGNLSLLQDIKV 78 (80)
T ss_dssp ECCCCTTCEEEEEEEEETTEEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEEeCCEEEEEEEEe
Confidence 468999999999765 4555544 5543
Done!