Query 004898
Match_columns 724
No_of_seqs 373 out of 826
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 09:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004898.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004898hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wid_A DNA-binding protein RAV 100.0 1.9E-28 6.6E-33 228.6 14.3 114 105-218 6-121 (130)
2 4i1k_A B3 domain-containing tr 99.7 3E-17 1E-21 156.2 11.9 98 109-216 45-144 (146)
3 1yel_A AT1G16640; CESG, protei 99.5 2.1E-14 7.2E-19 128.4 10.8 95 109-214 7-101 (104)
4 1vd2_A Protein kinase C, IOTA 94.6 0.096 3.3E-06 46.3 7.6 58 613-673 7-64 (89)
5 1wmh_B Partitioning defective- 94.0 0.14 4.8E-06 45.1 7.4 66 612-681 6-71 (86)
6 1na6_A Ecorii, restriction end 93.5 0.11 3.6E-06 56.9 6.8 92 110-202 18-123 (404)
7 2ktr_A Sequestosome-1; autopha 88.9 0.62 2.1E-05 43.1 5.9 62 609-673 17-95 (117)
8 1oey_A P67-PHOX, neutrophil cy 88.2 1.7 5.7E-05 38.0 7.9 70 614-688 7-79 (83)
9 2kkc_A Sequestosome-1; P62, PB 87.2 0.94 3.2E-05 40.9 6.0 63 612-678 5-83 (102)
10 1q1o_A Cell division control p 84.5 1.2 4.1E-05 40.1 5.1 71 612-682 5-85 (98)
11 2bkf_A Zinc-finger protein NBR 73.9 8.2 0.00028 34.0 6.9 55 614-672 8-62 (87)
12 1wj6_A KIAA0049 protein, RSGI 72.3 8.7 0.0003 34.7 6.8 62 614-681 16-77 (101)
13 1oey_J P40-PHOX, neutrophil cy 71.2 3.8 0.00013 37.2 4.2 56 629-690 28-83 (107)
14 1pqs_A Cell division control p 64.5 7.4 0.00025 33.4 4.5 55 628-682 6-64 (77)
15 2jng_A Cullin-7, CUL-7; P53 bi 38.1 33 0.0011 31.2 4.4 69 317-399 10-78 (105)
16 3p8d_A Medulloblastoma antigen 34.9 40 0.0014 28.3 4.2 41 325-380 3-43 (67)
17 3o27_A Putative uncharacterize 33.8 49 0.0017 27.9 4.5 35 183-217 31-66 (68)
18 3s6w_A Tudor domain-containing 32.7 39 0.0014 26.2 3.7 28 328-359 1-28 (54)
19 1mhn_A SurviVal motor neuron p 31.4 43 0.0015 26.5 3.7 29 327-359 2-30 (59)
20 1e8p_A Endoglucanase, dockerin 30.2 15 0.00051 28.9 0.8 13 657-669 20-32 (46)
21 4a4f_A SurviVal of motor neuro 28.4 50 0.0017 26.7 3.7 30 326-359 6-35 (64)
22 3m7a_A Uncharacterized protein 27.9 73 0.0025 30.0 5.2 47 150-199 83-140 (140)
23 3qii_A PHD finger protein 20; 24.1 74 0.0025 27.9 4.1 40 326-380 19-58 (85)
24 2e63_A KIAA1787 protein; struc 23.2 45 0.0015 32.2 2.9 26 188-213 115-140 (170)
25 2equ_A PHD finger protein 20-l 22.8 67 0.0023 27.1 3.6 39 327-380 8-46 (74)
26 3h8z_A FragIle X mental retard 21.6 1E+02 0.0035 28.7 4.8 60 298-358 27-90 (128)
27 2k75_A Uncharacterized protein 21.6 2.1E+02 0.0072 25.0 6.8 47 150-216 39-89 (106)
28 1g5v_A SurviVal motor neuron p 20.1 84 0.0029 27.3 3.7 30 326-359 8-37 (88)
No 1
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.95 E-value=1.9e-28 Score=228.59 Aligned_cols=114 Identities=31% Similarity=0.501 Sum_probs=104.0
Q ss_pred CCCCcceEEEEecccccCCCCCceEEcccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhh
Q 004898 105 SESEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWST 184 (724)
Q Consensus 105 ~~~~~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~~rrhlLTtGWs~ 184 (724)
...+..++|.|+||+|||+++++|+||+++|+.|||.++..+.++.++|.++|.+|++|+|||+||+++++|+||+||+.
T Consensus 6 ~~~~~~~~F~K~Lt~SDv~~~~rL~iPk~~a~~~lP~~~~~~~~~~~~l~l~D~~Gk~W~fr~~~~~~~~~~~Lt~GW~~ 85 (130)
T 1wid_A 6 SGRSAEALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSR 85 (130)
T ss_dssp --CCCEEEEEEECCTTTTSSSCCEEECHHHHTTTSCCCSSCCSSCCEEEEEEETTTEEEEEEEEEETTTTEEEEESSHHH
T ss_pred CCCCCcceEEEEEehHHcCCCCEEEeCHHHHHhhCCccccccCCCcEEEEEEeCCCCEEEEEEEEECCCCceEEcCChHH
Confidence 34456689999999999999999999999999999999987667789999999999999999999999999999999999
Q ss_pred HhhccCCCCCCEEEEEEecC--CcEEEEEEEcccCC
Q 004898 185 FVNQKKLVAGDSIVFLRAQD--GDLCVGIRRAKKGI 218 (724)
Q Consensus 185 FV~~KkL~aGD~VvF~R~~~--GeL~VGIRR~~~~~ 218 (724)
||++|+|++||+|+|++.++ +.|+|++||+....
T Consensus 86 FV~~~~L~~GD~~~F~~~~~~~~~l~I~~rr~~~~~ 121 (130)
T 1wid_A 86 FVKEKNLRAGDVVSFSRSNGQDQQLYIGWKSRSGSD 121 (130)
T ss_dssp HHHHTTCCTTCEEEEEECCSSSCCEEEEEECCCSCS
T ss_pred HHHHcCCCCCCEEEEEEecCCCcEEEEEEEECCCCC
Confidence 99999999999999999874 57999999998754
No 2
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=99.71 E-value=3e-17 Score=156.24 Aligned_cols=98 Identities=22% Similarity=0.308 Sum_probs=86.6
Q ss_pred cceEEEEecccccCCCCCceEEcccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhHhhc
Q 004898 109 KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQ 188 (724)
Q Consensus 109 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~~rrhlLTtGWs~FV~~ 188 (724)
..++|.|+||+||+.++..|.||+++++.|||..+ +.+.++|. |+.|+|+|+|++. ++.|++||..||++
T Consensus 45 ~~P~Fvk~l~~S~v~~~~~L~IP~~Fa~~~lp~~~-------~~i~L~~~-gk~W~v~~~~~~~--~~~ls~GW~~Fv~d 114 (146)
T 4i1k_A 45 TNPFFRVVLRPSYLYRGCIMYLPSGFAEKYLSGIS-------GFIKVQLA-EKQWPVRCLYKAG--RAKFSQGWYEFTLE 114 (146)
T ss_dssp SSCEEEEECCGGGSSTTCCEECCHHHHHHHCTTCC-------SEEEEEET-TEEEEEEEEEETT--EEEECTTHHHHHHH
T ss_pred CCCEEEEEECchhcCCCcEEEeCHHHHHHhCCCCC-------eEEEEEEC-CcEEEEEEEEeCC--cEEECCchHHHHHH
Confidence 34799999999999987789999999999999753 47788887 6999999999974 79999999999999
Q ss_pred cCCCCCCEEEEEEecCC--cEEEEEEEccc
Q 004898 189 KKLVAGDSIVFLRAQDG--DLCVGIRRAKK 216 (724)
Q Consensus 189 KkL~aGD~VvF~R~~~G--eL~VGIRR~~~ 216 (724)
++|++||+|+|...++. .+.|.|.|+..
T Consensus 115 n~L~~GD~cvFeli~~~~~~f~V~IfR~~e 144 (146)
T 4i1k_A 115 NNLGEGDVCVFELLRTRDFVLKVTAFRVNE 144 (146)
T ss_dssp TTCCTTCEEEEEECSSSSCEEEEEEECCC-
T ss_pred cCCCCCCEEEEEEecCCceEEEEEEEeccC
Confidence 99999999999998765 68999998764
No 3
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=99.54 E-value=2.1e-14 Score=128.43 Aligned_cols=95 Identities=25% Similarity=0.405 Sum_probs=82.3
Q ss_pred cceEEEEecccccCCCCCceEEcccchhhcCCCCCCCCCCCceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhHhhc
Q 004898 109 KPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQ 188 (724)
Q Consensus 109 ~~~~F~K~LT~SDv~~~grfsVPk~~Ae~~FP~Ld~~~~~p~q~L~~~D~~G~~W~Fr~~yrg~~rrhlLTtGWs~FV~~ 188 (724)
..+.|.|+|+++|.. .+|.||+++++.+.+.+. ..+.++|..|++|++++.+++ .++.|+.||.+||++
T Consensus 7 ~~p~F~K~l~~~~~~--~~L~IP~~F~~~~~~~~~-------~~v~L~~~~G~~W~v~~~~~~--~~~~l~~GW~~Fv~~ 75 (104)
T 1yel_A 7 GEVQFMKPFISEKSS--KSLEIPLGFNEYFPAPFP-------ITVDLLDYSGRSWTVRMKKRG--EKVFLTVGWENFVKD 75 (104)
T ss_dssp CCEEEEEECCHHHHT--TCEECCHHHHTTCCCCCC-------SEEEEEETTSCEEEEEEEEET--TEEEECTTHHHHHHH
T ss_pred CCCCEEEEECCCCcc--ceEECCHHHHHhcCccCC-------CEEEEECCCCCEEEEEEEEEC--CcEEEccChHHHHHH
Confidence 346899999999944 489999999988655432 378899999999999999874 578999999999999
Q ss_pred cCCCCCCEEEEEEecCCcEEEEEEEc
Q 004898 189 KKLVAGDSIVFLRAQDGDLCVGIRRA 214 (724)
Q Consensus 189 KkL~aGD~VvF~R~~~GeL~VGIRR~ 214 (724)
++|++||.|+|....+..+.|-|-+.
T Consensus 76 ~~L~~GD~lvF~~~~~~~f~V~If~~ 101 (104)
T 1yel_A 76 NNLEDGKYLQFIYDRDRTFYVIIYGH 101 (104)
T ss_dssp HTCCTTCEEEEEECSSSEEEEEEECS
T ss_pred cCCCCCCEEEEEEcCCCeEEEEEECC
Confidence 99999999999999999999999874
No 4
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=94.56 E-value=0.096 Score=46.26 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=44.4
Q ss_pred ceEEEEecCceeeeeccCCCCCCHHHHHHHHHHhhCCCccCCceeEEEEeCCCCeeecCCC
Q 004898 613 GHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDE 673 (724)
Q Consensus 613 ~~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGD~mlvGD~ 673 (724)
.-+||+.+|.-+-=.++. --+|++|+++|.++|.+.. +-..+|-|.|.|||+.-+-.+
T Consensus 7 vkvK~~~~gdi~~~~v~~--~i~~~~L~~kv~~~~~~~~-~~~f~lky~DEeGD~itisSd 64 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEP--SISFEGLCNEVRDMCSFDN-EQLFTMKWIDEEGDPCTVSSQ 64 (89)
T ss_dssp EEEEEESSSCEEEEEECT--TCCHHHHHHHHHHHTTCCS-SCCEEEEECCSSSCCEECCSH
T ss_pred EEEEEEeCCeEEEEECCC--CCCHHHHHHHHHHHhCCCC-CCeEEEEEECCCCCcccccCH
Confidence 578999999744334444 4699999999999999863 223588899999998776654
No 5
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=94.03 E-value=0.14 Score=45.05 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=51.5
Q ss_pred cceEEEEecCceeeeeccCCCCCCHHHHHHHHHHhhCCCccCCceeEEEEeCCCCeeecCCCChhHHHhc
Q 004898 612 TGHCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKS 681 (724)
Q Consensus 612 ~~~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGD~mlvGD~PW~~F~~~ 681 (724)
.-.||..-+++--==.+|-+...+|++|+..|+++|.+.. ....+.|+|.+||++-+-++ ++|.+.
T Consensus 6 ~l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~--~~f~i~Y~D~dGDLlpInnD--dnl~~A 71 (86)
T 1wmh_B 6 IVEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPG--LDVLLGYTDAHGDLLPLTND--DSLHRA 71 (86)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTT--CCCEEEEECTTSCEEECCSH--HHHHHH
T ss_pred EEEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCC--CCEEEEEECCCCCEeeecCH--HHHHHH
Confidence 3567888888632226666778899999999999999853 44688999999999999887 677544
No 6
>1na6_A Ecorii, restriction endonuclease ecorii; site-specific restriction, mutation, replication, hydrolase; 2.10A {Escherichia coli} SCOP: b.142.1.1 c.52.1.22 PDB: 3hqg_A 3hqf_A
Probab=93.46 E-value=0.11 Score=56.87 Aligned_cols=92 Identities=20% Similarity=0.224 Sum_probs=67.9
Q ss_pred ceEEEEecccccCCCC----CceEEcccchhhcCCCCC-CCCCCCceEEEEE--eCCCCeEEEEEEEeC------CCCce
Q 004898 110 PASFAKTLTQSDANNG----GGFSVPRYCAETIFPRLD-YTADPPVQTVVAK--DVHGEIWKFRHIYRG------TPRRH 176 (724)
Q Consensus 110 ~~~F~K~LT~SDv~~~----grfsVPk~~Ae~~FP~Ld-~~~~~p~q~L~~~--D~~G~~W~Fr~~yrg------~~rrh 176 (724)
-..|+|.|++.|++.+ .+|.+|+..+..+||.|+ .....|.+.+.+. |...-++.++.+|.+ ++..|
T Consensus 18 ~~v~~K~LSAnDtgatgshQ~gi~ipk~~l~~lfp~lg~~~e~~~~~~~~~~l~d~d~p~td~~~twYn~R~~~~tRnEy 97 (404)
T 1na6_A 18 YFVYIKRLSANDTGATGGHQVGLYIPSGIVEKLFPSINHTRELNPSVFLTAHVSSHDCPDSEARAIYYNSAHFGKTRNEK 97 (404)
T ss_dssp EEEEEEECCHHHHTCC---CCCCCCCHHHHHHHCGGGCCCSSSSCEEEEEEEESSSCCCCEEEEEEEECGGGTTSCCCEE
T ss_pred chheeEEcccccCCCCCCcccccCCchHHHHHhcccCCCccccCCcceeEEEeccCCCceEEEEEEEecccccCCCCCce
Confidence 4789999999999854 379999987999999998 3344566665543 444455599999997 45678
Q ss_pred eeccch-hhHhhccCCCCCCEEEEEEe
Q 004898 177 LLTTGW-STFVNQKKLVAGDSIVFLRA 202 (724)
Q Consensus 177 lLTtGW-s~FV~~KkL~aGD~VvF~R~ 202 (724)
.||. | ..+.=.....+||.++|-+.
T Consensus 98 RLt~-~~~~~~~~~~a~~GDLlvia~~ 123 (404)
T 1na6_A 98 RITR-WGRGSPLQDPENTGALTLLAFK 123 (404)
T ss_dssp EEEC-CCTTSGGGCGGGTTCEEEEEEE
T ss_pred EEee-cCCCCcccccCCCCCEEEEEEe
Confidence 8872 2 23444577889999999865
No 7
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=88.85 E-value=0.62 Score=43.10 Aligned_cols=62 Identities=16% Similarity=0.318 Sum_probs=44.0
Q ss_pred CCccceEEEEecC-----ceeeeeccCC-----------CCCCHHHHHHHHHHhh-CCCccCCceeEEEEeCCCCeeecC
Q 004898 609 GLDTGHCKVFLES-----EDVGRTLDLS-----------VLSSYEELYRRLAIMF-GIERSDMLSHVLYQDASGAIKRTG 671 (724)
Q Consensus 609 ~~~~~~vKV~meG-----~~vGR~vDLs-----------~~~sY~eL~~~L~~MF-~i~~~~l~~~v~Y~D~eGD~mlvG 671 (724)
...+..||++..| ..| |.+-|. ...+|++|+..+.++| .+.+. ...+.|+|.|||+.-+-
T Consensus 17 ~~~~l~vKayl~~~~~~~~EI-RRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~--~f~l~YkDEdGDlItIS 93 (117)
T 2ktr_A 17 HMGSLTVKAYLLGKEEAAREI-RRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPG--GFQAHYRAERGDLVAFS 93 (117)
T ss_dssp ---CEEEEEEEECSSSCEEEE-EEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSS--CEEEEEECTTCCEEEEC
T ss_pred ccccEEEEEEEecCCCCCCcE-EEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCC--cEEEEEECCCCCEEEec
Confidence 3446788999974 333 433332 2469999999999999 45542 36889999999998887
Q ss_pred CC
Q 004898 672 DE 673 (724)
Q Consensus 672 D~ 673 (724)
.+
T Consensus 94 sD 95 (117)
T 2ktr_A 94 SD 95 (117)
T ss_dssp SH
T ss_pred CH
Confidence 76
No 8
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=88.18 E-value=1.7 Score=37.96 Aligned_cols=70 Identities=13% Similarity=0.171 Sum_probs=56.8
Q ss_pred eEEEEecCceeeeeccCCCCCCHHHHHHHHHHhhCCCccCCceeEEEEe-CCCCeeecCCCChhHHHhcee--EEEEe
Q 004898 614 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQD-ASGAIKRTGDEPFSDFMKSAK--RLTIL 688 (724)
Q Consensus 614 ~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D-~eGD~mlvGD~PW~~F~~~vk--RL~I~ 688 (724)
-|||+-+ .--+|....=-+|.+|++.|.+=+.+..++ .++-|+| .+|.+++.+|.=++.=...|+ ||++.
T Consensus 7 ~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~l~~~~--~~LsYk~~~s~~~vi~~d~dl~~aw~~~~n~~LtL~ 79 (83)
T 1oey_A 7 TLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLELRLEH--TKLSYRPRDSNELVPLSEDSMKDAWGQVKNYCLTLW 79 (83)
T ss_dssp EEEEESS---SEEEEEECTTCCHHHHHHHHHHHTTCCGGG--CCEEECCTTCSSCEECCTTTHHHHHTTCBTTEEEEE
T ss_pred EEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhCCCcce--eEEEeeCCCCCCeeccChHHHHHHHHhccCCcEEEE
Confidence 4577776 567788888889999999999999987533 3778999 688888999999998888754 77765
No 9
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=87.24 E-value=0.94 Score=40.87 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=44.3
Q ss_pred cceEEEEecCc----eeeeeccCC-----------CCCCHHHHHHHHHHhhC-CCccCCceeEEEEeCCCCeeecCCCCh
Q 004898 612 TGHCKVFLESE----DVGRTLDLS-----------VLSSYEELYRRLAIMFG-IERSDMLSHVLYQDASGAIKRTGDEPF 675 (724)
Q Consensus 612 ~~~vKV~meG~----~vGR~vDLs-----------~~~sY~eL~~~L~~MF~-i~~~~l~~~v~Y~D~eGD~mlvGD~PW 675 (724)
+..||++..|. .-=|.+-|. ...+|++|+..+.++|. +.+ -...+.|.|.|||+.-+.++
T Consensus 5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~--~~f~l~Y~DedGDlItiSsD-- 80 (102)
T 2kkc_A 5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRP--GGFQAHYRAERGDLVAFSSD-- 80 (102)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCS--SCEEEEEECTTCCEEEECSH--
T ss_pred eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCC--CcEEEEEECCCCCEEEecCH--
Confidence 35678888752 223444332 12589999999999996 443 23688999999999988877
Q ss_pred hHH
Q 004898 676 SDF 678 (724)
Q Consensus 676 ~~F 678 (724)
+++
T Consensus 81 eEL 83 (102)
T 2kkc_A 81 EEL 83 (102)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 10
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=84.46 E-value=1.2 Score=40.06 Aligned_cols=71 Identities=11% Similarity=0.184 Sum_probs=51.8
Q ss_pred cceEEEEecCce----e--eeeccCCCCCCHHHHHHHHHHhhCCC-ccCC--ceeEEEEeCCCCeeecCCC-ChhHHHhc
Q 004898 612 TGHCKVFLESED----V--GRTLDLSVLSSYEELYRRLAIMFGIE-RSDM--LSHVLYQDASGAIKRTGDE-PFSDFMKS 681 (724)
Q Consensus 612 ~~~vKV~meG~~----v--GR~vDLs~~~sY~eL~~~L~~MF~i~-~~~l--~~~v~Y~D~eGD~mlvGD~-PW~~F~~~ 681 (724)
...|||+-++.. + -|+|=+..-=+|++|+.++.+=|++. +.+. ..++-|+|.|||+..++++ =|++=+.+
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD~Vtl~sddDl~~A~e~ 84 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEM 84 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSCEEEECSHHHHHHHHHH
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHH
Confidence 357788877421 2 36777778889999999999999864 2232 3578899999999887765 56666665
Q ss_pred e
Q 004898 682 A 682 (724)
Q Consensus 682 v 682 (724)
+
T Consensus 85 ~ 85 (98)
T 1q1o_A 85 L 85 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 11
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=73.95 E-value=8.2 Score=34.03 Aligned_cols=55 Identities=9% Similarity=0.131 Sum_probs=42.9
Q ss_pred eEEEEecCceeeeeccCCCCCCHHHHHHHHHHhhCCCccCCceeEEEEeCCCCeeecCC
Q 004898 614 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGD 672 (724)
Q Consensus 614 ~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGD~mlvGD 672 (724)
-.||.-.|+..-=-|.-..--++++|...+..+|++.. .+|.|.|.|||-.-|=-
T Consensus 8 ~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~~----~~ikY~DEenD~v~i~S 62 (87)
T 2bkf_A 8 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT----IQIKYLDEENEEVSINS 62 (87)
T ss_dssp EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCSS----EEEEEECTTSCEEEECS
T ss_pred EEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCCc----eEEEEEcCCCCEEEEec
Confidence 45899999743223544447789999999999999985 58899999999876654
No 12
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=72.31 E-value=8.7 Score=34.71 Aligned_cols=62 Identities=8% Similarity=0.148 Sum_probs=47.1
Q ss_pred eEEEEecCceeeeeccCCCCCCHHHHHHHHHHhhCCCccCCceeEEEEeCCCCeeecCCCChhHHHhc
Q 004898 614 HCKVFLESEDVGRTLDLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKS 681 (724)
Q Consensus 614 ~vKV~meG~~vGR~vDLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGD~mlvGD~PW~~F~~~ 681 (724)
-.||.-.|+..-=-|.-..--++++|...+..+|++.. .+|.|.|.|||-.-|=- ..+|-+.
T Consensus 16 ~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~~----~~IkY~DEenD~V~i~S--q~E~eEA 77 (101)
T 1wj6_A 16 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLNT----IQIKYLDEENEEVSINS--QGEYEEA 77 (101)
T ss_dssp EEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCSS----BCCEEECTTSCEECCCS--HHHHHHH
T ss_pred EEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCCc----eEEEEecCCCCEEEEec--HHHHHHH
Confidence 45999999743334644557789999999999999985 58899999999987754 3555433
No 13
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=71.20 E-value=3.8 Score=37.24 Aligned_cols=56 Identities=23% Similarity=0.223 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHhhCCCccCCceeEEEEeCCCCeeecCCCChhHHHhceeEEEEecC
Q 004898 629 DLSVLSSYEELYRRLAIMFGIERSDMLSHVLYQDASGAIKRTGDEPFSDFMKSAKRLTILMG 690 (724)
Q Consensus 629 DLs~~~sY~eL~~~L~~MF~i~~~~l~~~v~Y~D~eGD~mlvGD~PW~~F~~~vkRL~I~~~ 690 (724)
||+.--+|++|.....+-|.-+. -.+-|+|.|||+.-+=|+ ++--=|+++-++++.
T Consensus 28 dl~~~P~ykdLl~lmr~~F~~~D----IaLNYrD~eGDLIrildd--eDv~lmi~~sr~~~s 83 (107)
T 1oey_J 28 DLSSTPLLKDLLELTRREFQRED----IALNYRDAEGDLVRLLSD--EDVALMVRQARGLPS 83 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHCCSS----EEEEEECTTSCEEECCSH--HHHHHHHHHCCCCCC
T ss_pred ccccCCCHHHHHHHHHHHhcccc----eeeeeecCCCCEEEEcch--HHHHHHHHHhhcCcc
Confidence 78888999999999999999664 356699999999888777 666666666655443
No 14
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=64.50 E-value=7.4 Score=33.35 Aligned_cols=55 Identities=13% Similarity=0.243 Sum_probs=38.9
Q ss_pred ccCCCCCCHHHHHHHHHHhhCCCc-cC--CceeEEEEeCCCCeeecCCC-ChhHHHhce
Q 004898 628 LDLSVLSSYEELYRRLAIMFGIER-SD--MLSHVLYQDASGAIKRTGDE-PFSDFMKSA 682 (724)
Q Consensus 628 vDLs~~~sY~eL~~~L~~MF~i~~-~~--l~~~v~Y~D~eGD~mlvGD~-PW~~F~~~v 682 (724)
|=...-=+|++|+.++.+=|++.. .+ -..++-|+|.|||+..++++ =|++=+.++
T Consensus 6 i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD~Vti~sddDl~~A~~~~ 64 (77)
T 1pqs_A 6 LLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGDFVVLGSDEDWNVAKEML 64 (77)
T ss_dssp EECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTEEEECCSTTHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCCEEEEcCHHHHHHHHHHH
Confidence 334445579999999999999641 11 12478899999999877655 676666654
No 15
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=38.12 E-value=33 Score=31.19 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=45.2
Q ss_pred ehHHHHHHHhcccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCccccCCCCcccceeeee
Q 004898 317 KASAVKAAMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVEL 396 (724)
Q Consensus 317 ~~~~y~~A~~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~~~~~~~~RVSPWeIE~ 396 (724)
+.+.|-.=++.+..||||+||.=.-|+-+.. =.|++. ++ .+- -| ..||.|..... .-.|+-=.||+
T Consensus 10 s~~~Ya~YVr~~l~pGM~VR~~~dyeev~~G--D~G~vl-~s-~~G--l~-----~vQv~W~~~G~---TyWV~~~~~El 75 (105)
T 2jng_A 10 SGNTYALYVRDTLQPGMRVRMLDDYEEISAG--DEGEFR-QS-NNG--VP-----PVQVFWESTGR---TYWVHWHMLEI 75 (105)
T ss_dssp SSHHHHHHHHHHCCTTCEEEECSCBTTBCTT--CEEEEE-EE-CTT--SS-----EEEEEETTTTE---EEEEEGGGEEE
T ss_pred cchhHHHHHHhcCCCccEEeeehhhhhhccC--CceeEE-ec-CCC--Cc-----cceeeehhcCc---eEEEEeehhhh
Confidence 4677888889999999999998544544432 257776 32 222 12 78999997652 45555555666
Q ss_pred ccC
Q 004898 397 VSN 399 (724)
Q Consensus 397 v~~ 399 (724)
+..
T Consensus 76 lg~ 78 (105)
T 2jng_A 76 LGF 78 (105)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 16
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=34.92 E-value=40 Score=28.25 Aligned_cols=41 Identities=7% Similarity=0.199 Sum_probs=32.2
Q ss_pred HhcccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCc
Q 004898 325 MRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEP 380 (724)
Q Consensus 325 ~~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~ 380 (724)
|-..|.+|+++--++ ++- +||-+||.+|... ....|.+++.
T Consensus 3 ~~~~~~vGd~vmArW-~D~----~yYpA~I~si~~~----------~~Y~V~F~dG 43 (67)
T 3p8d_A 3 MSSEFQINEQVLACW-SDC----RFYPAKVTAVNKD----------GTYTVKFYDG 43 (67)
T ss_dssp --CCCCTTCEEEEEC-TTS----CEEEEEEEEECTT----------SEEEEEETTS
T ss_pred cCcccccCCEEEEEc-CCC----CEeeEEEEEECCC----------CeEEEEEeCC
Confidence 456899999999999 433 6999999999741 4588999983
No 17
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=33.76 E-value=49 Score=27.93 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=30.3
Q ss_pred hhHhhccCCCCCCEEEEEEec-CCcEEEEEEEcccC
Q 004898 183 STFVNQKKLVAGDSIVFLRAQ-DGDLCVGIRRAKKG 217 (724)
Q Consensus 183 s~FV~~KkL~aGD~VvF~R~~-~GeL~VGIRR~~~~ 217 (724)
.++++.-+|+.||.+...-++ +|++.+..+|-++.
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdgeIvLcykRVKk~ 66 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGDIVLSYKRVKEL 66 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTEEEEEEEECGGG
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCeEEEEehhhhhc
Confidence 489999999999999998875 88899999997653
No 18
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=32.67 E-value=39 Score=26.15 Aligned_cols=28 Identities=7% Similarity=0.302 Sum_probs=22.4
Q ss_pred ccccccEEEEEeecCCCCceeeeeeEEEEeec
Q 004898 328 HWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359 (724)
Q Consensus 328 ~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~ 359 (724)
.|.+|+..--.|..+. .||.++|.++..
T Consensus 1 ~wk~G~~c~A~~s~Dg----~wYrA~I~~i~~ 28 (54)
T 3s6w_A 1 MWKPGDECFALYWEDN----KFYRAEVEALHS 28 (54)
T ss_dssp CCCTTCEEEEEETTTT----EEEEEEEEEC--
T ss_pred CCCCCCEEEEEECCCC----CEEEEEEEEEeC
Confidence 4999999999995444 799999999863
No 19
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=31.39 E-value=43 Score=26.53 Aligned_cols=29 Identities=17% Similarity=0.436 Sum_probs=23.9
Q ss_pred cccccccEEEEEeecCCCCceeeeeeEEEEeec
Q 004898 327 VHWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359 (724)
Q Consensus 327 ~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~ 359 (724)
..|.+|+.+-..|..+. .||.++|.++..
T Consensus 2 ~~~~~G~~c~A~~s~Dg----~wYrA~I~~i~~ 30 (59)
T 1mhn_A 2 QQWKVGDKCSAIWSEDG----CIYPATIASIDF 30 (59)
T ss_dssp CCCCTTCEEEEECTTTS----CEEEEEEEEEET
T ss_pred CcCCcCCEEEEEECCCC----CEEEEEEEEEcC
Confidence 47999999999995333 699999999964
No 20
>1e8p_A Endoglucanase, dockerin; cellulose docking domain, cellulase; NMR {Piromyces equi} SCOP: g.55.1.1 PDB: 1e8q_A
Probab=30.20 E-value=15 Score=28.90 Aligned_cols=13 Identities=46% Similarity=0.509 Sum_probs=11.1
Q ss_pred eEEEEeCCCCeee
Q 004898 657 HVLYQDASGAIKR 669 (724)
Q Consensus 657 ~v~Y~D~eGD~ml 669 (724)
.|+|+|.+|+|=.
T Consensus 20 ~V~YtD~dG~WGV 32 (46)
T 1e8p_A 20 KVEYTDASGQWGV 32 (46)
T ss_dssp CEEEEETTEEEEE
T ss_pred eEEEEcCCCcccc
Confidence 4899999999954
No 21
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=28.40 E-value=50 Score=26.68 Aligned_cols=30 Identities=10% Similarity=0.323 Sum_probs=25.0
Q ss_pred hcccccccEEEEEeecCCCCceeeeeeEEEEeec
Q 004898 326 RVHWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359 (724)
Q Consensus 326 ~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~ 359 (724)
...|.+|+.+.-.|..+. .||.++|.++..
T Consensus 6 ~~~~~vGd~c~A~~s~Dg----~wYrA~I~~v~~ 35 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDG----QCYEAEIEEIDE 35 (64)
T ss_dssp SSCCCTTCEEEEECTTTS----SEEEEEEEEEET
T ss_pred CCCCCCCCEEEEEECCCC----CEEEEEEEEEcC
Confidence 458999999999995443 699999999974
No 22
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=27.89 E-value=73 Score=29.96 Aligned_cols=47 Identities=11% Similarity=0.191 Sum_probs=33.5
Q ss_pred ceEEEEEeCCCCeEEEEEEEe---------CCCCceee--ccchhhHhhccCCCCCCEEEE
Q 004898 150 VQTVVAKDVHGEIWKFRHIYR---------GTPRRHLL--TTGWSTFVNQKKLVAGDSIVF 199 (724)
Q Consensus 150 ~q~L~~~D~~G~~W~Fr~~yr---------g~~rrhlL--TtGWs~FV~~KkL~aGD~VvF 199 (724)
..++.+.|..|++-....--. ..+-+|+| ..|| +.+.++++||.|.|
T Consensus 83 PLDiiFid~dg~Vv~i~~~~~P~~~~~~~s~~~a~~VLEl~aG~---~~~~gi~~Gd~v~~ 140 (140)
T 3m7a_A 83 PLDIIFVGLDRRVMNIAANAVPYDETPLPAAGPTLAVLEINGGL---AARLGIKPGDKVEW 140 (140)
T ss_dssp CEEEEEECTTSBEEEEEEEECTTCCCCEEEEEECSEEEEEETTH---HHHHTCCTTCEEEC
T ss_pred ceEEEEECCCCeEEEEEccCCCCcCCCCCCCCcccEEEEeCcCh---HHHcCCCCCCEEeC
Confidence 357788888888777654211 12347887 6887 68899999999875
No 23
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=24.07 E-value=74 Score=27.87 Aligned_cols=40 Identities=5% Similarity=0.169 Sum_probs=31.8
Q ss_pred hcccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCc
Q 004898 326 RVHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEP 380 (724)
Q Consensus 326 ~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~ 380 (724)
...|.+|+++--++ ++- +||-+||.+|... ....|++++.
T Consensus 19 ~~~f~vGd~VlArW-~D~----~yYPAkI~sV~~~----------~~YtV~F~DG 58 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDC----RFYPAKVTAVNKD----------GTYTVKFYDG 58 (85)
T ss_dssp --CCCTTCEEEEEC-TTS----CEEEEEEEEECTT----------SEEEEEETTS
T ss_pred CcccccCCEEEEEe-CCC----CEeeEEEEEECCC----------CeEEEEEeCC
Confidence 45899999999999 433 6999999999752 3588999984
No 24
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.21 E-value=45 Score=32.23 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.3
Q ss_pred ccCCCCCCEEEEEEecCCcEEEEEEE
Q 004898 188 QKKLVAGDSIVFLRAQDGDLCVGIRR 213 (724)
Q Consensus 188 ~KkL~aGD~VvF~R~~~GeL~VGIRR 213 (724)
-..|.+||.|-|++..+|+|.+.|.-
T Consensus 115 l~~l~~Gd~ig~~~~~~G~l~~~iNg 140 (170)
T 2e63_A 115 LDQLGEGDRVGVERTVAGELRLWVNG 140 (170)
T ss_dssp GGGCCSSCCEEEEECTTSCEEEEESS
T ss_pred ccccCCCCEEEEEEcCCcEEEEEECC
Confidence 34578999999999999999999853
No 25
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.79 E-value=67 Score=27.13 Aligned_cols=39 Identities=8% Similarity=0.238 Sum_probs=30.7
Q ss_pred cccccccEEEEEeecCCCCceeeeeeEEEEeecCCCCCCCCCCccccccccCCc
Q 004898 327 VHWLCGMRFKMAFETEDSSRISWFMGTISSVQVADPISWPNSPWRLLQVTWDEP 380 (724)
Q Consensus 327 ~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~~dp~~wp~S~WR~L~V~WDe~ 380 (724)
..|.+|+++.-+|. |. .||.+||.+|.. + ....|..++-
T Consensus 8 ~~~kvGd~clA~ws-Dg----~~Y~A~I~~v~~-------~---~~~~V~f~Dy 46 (74)
T 2equ_A 8 FDFKAGEEVLARWT-DC----RYYPAKIEAINK-------E---GTFTVQFYDG 46 (74)
T ss_dssp CCCCTTCEEEEECS-SS----SEEEEEEEEEST-------T---SSEEEEETTS
T ss_pred CCCCCCCEEEEECC-CC----CEEEEEEEEECC-------C---CEEEEEEecC
Confidence 57999999999996 33 699999999963 1 3567888764
No 26
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=21.61 E-value=1e+02 Score=28.72 Aligned_cols=60 Identities=7% Similarity=0.161 Sum_probs=40.3
Q ss_pred CCCEEEEEecCCCCCceEEehHHHHH----HHhcccccccEEEEEeecCCCCceeeeeeEEEEee
Q 004898 298 GKPFEVVYYPRASTPEFCVKASAVKA----AMRVHWLCGMRFKMAFETEDSSRISWFMGTISSVQ 358 (724)
Q Consensus 298 g~~F~V~Y~Pr~s~~EFvV~~~~y~~----A~~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~ 358 (724)
...+.|.|.-- ..++-.|+.+.++- +.+..+++|+.+......+|.--..||.|+|..+.
T Consensus 27 ~d~~~V~f~n~-w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~k 90 (128)
T 3h8z_A 27 EDSVTIFFENN-WQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMMK 90 (128)
T ss_dssp SSEEEEEETTC-TTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEEE
T ss_pred CCcEEEEEccc-cCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEee
Confidence 44588999643 12577888776552 33468999999999887666444469999999996
No 27
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=21.56 E-value=2.1e+02 Score=25.05 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=34.8
Q ss_pred ceEEEEEeCCCCeEEEEEEEeCCCCceeeccchhhHhhccCCCCCCEEEEEEe----cCCcEEEEEEEccc
Q 004898 150 VQTVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRA----QDGDLCVGIRRAKK 216 (724)
Q Consensus 150 ~q~L~~~D~~G~~W~Fr~~yrg~~rrhlLTtGWs~FV~~KkL~aGD~VvF~R~----~~GeL~VGIRR~~~ 216 (724)
...+.+.|..| ..++..|+.. |.+||+|.+... =+|.+.+-+-|..+
T Consensus 39 v~~~~l~DeTG---~I~~tlW~~~-----------------l~~Gdvv~i~ng~v~~~~g~~~L~v~~~~~ 89 (106)
T 2k75_A 39 VYQGYIEDDTA---RIRISSFGKQ-----------------LQDSDVVRIDNARVAQFNGYLSLSVGDSSR 89 (106)
T ss_dssp EEEEEEECSSC---EEEEEEESSC-----------------CCTTEEEEEEEEEEEEETTEEEEEECTTSE
T ss_pred EEEEEEEcCCC---eEEEEEEcCc-----------------cCCCCEEEEEeeEEeEECCEEEEEECCcEE
Confidence 45788999999 5888888653 889999999754 27777777755443
No 28
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=20.08 E-value=84 Score=27.34 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=24.4
Q ss_pred hcccccccEEEEEeecCCCCceeeeeeEEEEeec
Q 004898 326 RVHWLCGMRFKMAFETEDSSRISWFMGTISSVQV 359 (724)
Q Consensus 326 ~~~w~~GmRFkM~fE~EDss~i~wf~GTI~gv~~ 359 (724)
...|.+|+.+.-.|..+. .||.++|.++..
T Consensus 8 ~~~~kvGd~C~A~ys~Dg----~wYrA~I~~i~~ 37 (88)
T 1g5v_A 8 LQQWKVGDKCSAIWSEDG----CIYPATIASIDF 37 (88)
T ss_dssp -CCCCSSCEEEEECTTTC----CEEEEEEEEEET
T ss_pred cCCCCCCCEEEEEECCCC----CEEEEEEEEecC
Confidence 358999999999995333 699999999964
Done!