Query 004899
Match_columns 724
No_of_seqs 158 out of 998
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 09:12:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1why_A Hypothetical protein ri 99.6 1.8E-15 6.1E-20 126.6 9.4 66 1-66 29-96 (97)
2 1x5p_A Negative elongation fac 99.6 1.5E-15 5.2E-20 127.4 8.5 66 1-66 25-90 (97)
3 2wbr_A GW182, gawky, LD47780P; 99.6 8.1E-16 2.8E-20 134.6 6.9 61 1-61 19-79 (89)
4 4fxv_A ELAV-like protein 1; RN 99.6 8.6E-16 3E-20 131.6 6.8 62 1-62 31-98 (99)
5 1wex_A Hypothetical protein (r 99.6 2.8E-15 9.6E-20 130.9 9.5 65 1-65 27-93 (104)
6 3r27_A HnRNP L, heterogeneous 99.6 2.2E-15 7.5E-20 133.0 7.9 63 1-63 33-97 (100)
7 1sjq_A Polypyrimidine tract-bi 99.6 2.1E-15 7.1E-20 134.0 7.4 66 1-66 28-95 (105)
8 2la4_A Nuclear and cytoplasmic 99.6 1.5E-15 5E-20 127.7 6.0 63 1-63 39-101 (101)
9 2cpj_A Non-POU domain-containi 99.6 3E-15 1E-19 125.7 7.5 65 1-65 27-91 (99)
10 1x4g_A Nucleolysin TIAR; struc 99.6 6.8E-15 2.3E-19 125.8 9.0 66 1-66 37-102 (109)
11 2lxi_A RNA-binding protein 10; 99.6 2.3E-15 7.7E-20 126.7 5.9 67 1-67 13-87 (91)
12 3s8s_A Histone-lysine N-methyl 99.6 3.1E-15 1.1E-19 130.9 6.9 64 1-64 18-87 (110)
13 1whx_A Hypothetical protein ri 99.6 9.1E-15 3.1E-19 127.1 9.5 64 1-64 22-85 (111)
14 2cqi_A Nucleolysin TIAR; RNA r 99.6 9E-15 3.1E-19 123.3 9.2 66 1-66 27-96 (103)
15 1x4d_A Matrin 3; structural ge 99.6 2.9E-15 1E-19 131.4 6.4 65 1-65 28-94 (102)
16 4f25_A Polyadenylate-binding p 99.6 3.6E-15 1.2E-19 129.7 7.0 64 1-64 17-84 (115)
17 2dnq_A RNA-binding protein 4B; 99.6 1.3E-14 4.3E-19 120.0 9.8 64 1-66 20-83 (90)
18 2dnz_A Probable RNA-binding pr 99.6 1.2E-14 4E-19 120.4 9.5 66 1-66 17-88 (95)
19 2dgu_A Heterogeneous nuclear r 99.6 1.4E-14 4.9E-19 122.6 10.2 64 1-66 23-86 (103)
20 2ytc_A PRE-mRNA-splicing facto 99.6 3.3E-15 1.1E-19 121.4 5.9 61 1-61 24-85 (85)
21 1x4a_A Splicing factor, argini 99.5 1.1E-14 3.7E-19 124.3 8.8 66 1-66 34-102 (109)
22 2dgx_A KIAA0430 protein; RRM d 99.5 9E-15 3.1E-19 123.0 8.1 65 1-65 21-92 (96)
23 1x5s_A Cold-inducible RNA-bind 99.5 1.4E-14 4.9E-19 121.5 9.3 66 1-66 24-95 (102)
24 2cqd_A RNA-binding region cont 99.5 1.4E-14 4.9E-19 124.7 9.4 76 1-77 29-110 (116)
25 3bs9_A Nucleolysin TIA-1 isofo 99.5 6.4E-15 2.2E-19 119.8 6.9 63 1-63 18-86 (87)
26 2cpf_A RNA binding motif prote 99.5 7.6E-15 2.6E-19 122.4 7.4 66 1-66 17-91 (98)
27 2cph_A RNA binding motif prote 99.5 1.7E-14 5.8E-19 121.7 9.6 66 1-66 27-100 (107)
28 2ad9_A Polypyrimidine tract-bi 99.5 9.3E-15 3.2E-19 132.1 8.4 66 1-66 43-110 (119)
29 2cq3_A RNA-binding protein 9; 99.5 1.9E-14 6.6E-19 121.2 9.7 66 1-66 27-96 (103)
30 2cq1_A PTB-like protein L; RRM 99.5 8.4E-15 2.9E-19 127.5 7.7 66 1-66 27-94 (101)
31 2cq2_A Hypothetical protein LO 99.5 7.7E-15 2.6E-19 132.2 7.7 65 1-65 39-108 (114)
32 3md1_A Nuclear and cytoplasmic 99.5 8.8E-15 3E-19 118.1 7.3 63 1-63 13-81 (83)
33 1whw_A Hypothetical protein ri 99.5 2.1E-14 7.2E-19 120.0 9.7 66 1-66 20-91 (99)
34 2dgo_A Cytotoxic granule-assoc 99.5 2.1E-14 7E-19 123.3 9.7 66 1-66 27-98 (115)
35 2d9p_A Polyadenylate-binding p 99.5 1.1E-14 3.8E-19 122.7 7.8 66 1-66 27-96 (103)
36 2cqb_A Peptidyl-prolyl CIS-tra 99.5 1.1E-14 3.9E-19 122.2 7.7 66 1-66 24-95 (102)
37 4a8x_A RNA-binding protein wit 99.5 1.2E-14 4.2E-19 118.1 7.5 64 1-64 16-86 (88)
38 2e5h_A Zinc finger CCHC-type a 99.5 1.2E-14 4.3E-19 120.0 7.6 61 1-61 28-94 (94)
39 1x4f_A Matrin 3; structural ge 99.5 5.3E-15 1.8E-19 132.4 5.7 65 1-65 38-104 (112)
40 2bz2_A Negative elongation fac 99.5 1.4E-14 4.6E-19 128.7 8.1 65 1-65 49-113 (121)
41 2dgp_A Bruno-like 4, RNA bindi 99.5 2.7E-14 9.1E-19 120.7 9.5 66 1-66 25-99 (106)
42 2kvi_A Nuclear polyadenylated 99.5 1.4E-14 4.8E-19 121.6 7.7 64 1-66 23-86 (96)
43 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1.2E-14 4E-19 117.8 7.0 61 1-61 19-85 (85)
44 2dgv_A HnRNP M, heterogeneous 99.5 9.1E-15 3.1E-19 120.4 6.3 66 1-66 20-89 (92)
45 2hvz_A Splicing factor, argini 99.5 1.4E-14 4.8E-19 121.7 7.5 66 1-66 12-78 (101)
46 2dgs_A DAZ-associated protein 99.5 3.6E-14 1.2E-18 118.8 9.9 65 1-66 22-92 (99)
47 1x5t_A Splicing factor 3B subu 99.5 1.3E-14 4.5E-19 120.3 7.1 66 1-66 17-89 (96)
48 2x1f_A MRNA 3'-END-processing 99.5 1.8E-14 6E-19 120.4 7.9 65 1-65 14-84 (96)
49 1p27_B RNA-binding protein 8A; 99.5 1.7E-14 5.7E-19 121.9 7.8 64 1-64 35-104 (106)
50 3p5t_L Cleavage and polyadenyl 99.5 6E-15 2.1E-19 122.5 4.8 65 1-65 13-85 (90)
51 1x5u_A Splicing factor 3B subu 99.5 2.4E-14 8.3E-19 120.7 8.5 66 1-66 27-98 (105)
52 2do4_A Squamous cell carcinoma 99.5 2.2E-14 7.6E-19 120.3 8.2 66 1-66 29-99 (100)
53 2dnh_A Bruno-like 5, RNA bindi 99.5 2.4E-14 8.1E-19 120.8 8.4 66 1-66 27-100 (105)
54 2dnm_A SRP46 splicing factor; 99.5 1.8E-14 6.1E-19 121.5 7.5 66 1-66 25-96 (103)
55 2xnq_A Nuclear polyadenylated 99.5 2.4E-14 8.3E-19 121.4 8.4 62 1-64 35-96 (97)
56 1x4h_A RNA-binding protein 28; 99.5 3E-14 1E-18 121.0 8.9 66 1-66 27-104 (111)
57 2cqc_A Arginine/serine-rich sp 99.5 1.4E-14 4.9E-19 119.5 6.7 62 1-62 27-94 (95)
58 2cq0_A Eukaryotic translation 99.5 1.2E-14 4.3E-19 122.4 6.3 66 1-66 27-98 (103)
59 2dgt_A RNA-binding protein 30; 99.5 3.7E-14 1.3E-18 117.6 8.9 64 1-66 22-85 (92)
60 2do0_A HnRNP M, heterogeneous 99.5 4.3E-14 1.5E-18 120.8 9.5 66 1-66 27-97 (114)
61 2cqh_A IGF-II mRNA-binding pro 99.5 1.5E-14 5E-19 120.0 6.3 65 1-66 20-86 (93)
62 2e5i_A Heterogeneous nuclear r 99.5 3.5E-14 1.2E-18 129.0 9.1 65 1-65 37-104 (124)
63 2jvo_A Nucleolar protein 3; nu 99.5 2E-14 7E-19 124.6 7.2 64 1-66 43-106 (108)
64 2e5j_A Methenyltetrahydrofolat 99.5 3.9E-14 1.3E-18 118.8 8.7 65 1-65 31-96 (97)
65 2fy1_A RNA-binding motif prote 99.5 6.5E-14 2.2E-18 122.5 10.4 66 1-66 19-89 (116)
66 2dnp_A RNA-binding protein 14; 99.5 3.7E-14 1.3E-18 117.2 8.3 63 1-65 21-83 (90)
67 2cpi_A CCR4-NOT transcription 99.5 1.5E-14 5.1E-19 124.9 5.9 65 1-65 27-103 (111)
68 1wf1_A RNA-binding protein RAL 99.5 1.9E-14 6.5E-19 123.2 6.5 63 1-65 40-102 (110)
69 2ywk_A Putative RNA-binding pr 99.5 1.9E-14 6.7E-19 119.0 6.3 62 1-62 28-94 (95)
70 2lkz_A RNA-binding protein 5; 99.5 1.4E-14 4.7E-19 124.7 5.6 62 1-62 21-94 (95)
71 1u6f_A Tcubp1, RNA-binding pro 99.5 3.5E-14 1.2E-18 125.5 8.3 66 1-66 54-125 (139)
72 3zzy_A Polypyrimidine tract-bi 99.5 2.9E-14 9.8E-19 131.2 8.0 65 1-65 40-108 (130)
73 1sjr_A Polypyrimidine tract-bi 99.5 4E-14 1.4E-18 135.0 9.0 65 1-65 58-126 (164)
74 2jvr_A Nucleolar protein 3; RN 99.5 2.4E-14 8.2E-19 126.9 6.9 63 1-63 40-105 (111)
75 2err_A Ataxin-2-binding protei 99.5 2.5E-14 8.4E-19 123.5 6.7 63 1-63 41-107 (109)
76 1nu4_A U1A RNA binding domain; 99.5 2.9E-14 9.9E-19 118.4 6.8 65 1-65 20-91 (97)
77 2cpz_A CUG triplet repeat RNA- 99.5 4.4E-14 1.5E-18 121.5 8.1 66 1-66 37-108 (115)
78 3ulh_A THO complex subunit 4; 99.5 2.9E-14 9.8E-19 120.7 6.8 61 1-61 41-106 (107)
79 2kt5_A RNA and export factor-b 99.5 7.9E-14 2.7E-18 121.7 9.7 65 1-65 47-116 (124)
80 2pe8_A Splicing factor 45; RRM 99.5 3.9E-14 1.3E-18 123.9 7.6 62 2-63 26-94 (105)
81 2kxn_B Transformer-2 protein h 99.5 5.1E-14 1.7E-18 126.0 8.6 64 1-64 58-127 (129)
82 2dis_A Unnamed protein product 99.5 4.2E-14 1.4E-18 120.0 7.6 66 1-66 20-95 (109)
83 3ex7_B RNA-binding protein 8A; 99.5 5.6E-14 1.9E-18 122.3 8.5 66 1-66 34-105 (126)
84 1oo0_B CG8781-PA, drosophila Y 99.5 4.8E-14 1.6E-18 120.1 7.8 65 1-65 38-108 (110)
85 3ns6_A Eukaryotic translation 99.5 1.9E-14 6.4E-19 122.5 5.3 61 2-62 25-92 (100)
86 2dhg_A TRNA selenocysteine ass 99.5 5E-14 1.7E-18 118.6 7.8 66 1-66 21-93 (104)
87 1x4c_A Splicing factor, argini 99.5 8.7E-14 3E-18 119.3 9.2 64 1-65 27-95 (108)
88 1p1t_A Cleavage stimulation fa 99.5 3.2E-14 1.1E-18 119.5 6.2 65 1-65 20-90 (104)
89 2i2y_A Fusion protein consists 99.5 5.6E-14 1.9E-18 126.2 8.3 64 1-64 85-149 (150)
90 2a3j_A U1 small nuclear ribonu 99.5 5.9E-14 2E-18 126.9 8.4 65 1-65 41-112 (127)
91 2khc_A Testis-specific RNP-typ 99.5 2.7E-14 9.2E-19 123.0 5.7 61 1-61 52-118 (118)
92 2cpd_A Apobec-1 stimulating pr 99.5 1E-13 3.5E-18 116.4 9.1 63 1-65 27-91 (99)
93 2la6_A RNA-binding protein FUS 99.5 4.9E-14 1.7E-18 118.3 7.1 61 1-61 25-99 (99)
94 2jrs_A RNA-binding protein 39; 99.5 5.4E-14 1.8E-18 121.7 7.3 64 1-64 38-107 (108)
95 2cpe_A RNA-binding protein EWS 99.5 7.3E-14 2.5E-18 119.5 7.8 66 1-66 27-106 (113)
96 2kn4_A Immunoglobulin G-bindin 99.5 9.7E-14 3.3E-18 124.8 8.9 66 1-66 82-153 (158)
97 1wi8_A EIF-4B, eukaryotic tran 99.5 8.4E-14 2.9E-18 117.8 7.5 64 1-66 27-97 (104)
98 3v4m_A Splicing factor U2AF 65 99.5 7.7E-14 2.6E-18 121.8 7.4 61 3-63 29-97 (105)
99 2fc9_A NCL protein; structure 99.5 7.9E-14 2.7E-18 117.2 7.1 66 1-66 27-94 (101)
100 2cqp_A RNA-binding protein 12; 99.5 4.1E-14 1.4E-18 118.0 5.2 63 1-63 27-95 (98)
101 1wg1_A KIAA1579 protein, homol 99.5 4.5E-14 1.6E-18 116.8 5.5 63 1-64 17-79 (88)
102 2div_A TRNA selenocysteine ass 99.5 6.3E-14 2.2E-18 117.1 6.2 65 1-65 21-96 (99)
103 3lqv_A PRE-mRNA branch site pr 99.5 1.4E-13 4.8E-18 118.1 8.5 65 1-65 20-87 (115)
104 2mss_A Protein (musashi1); RNA 99.5 7.4E-14 2.5E-18 111.3 6.3 59 1-60 11-75 (75)
105 3ucg_A Polyadenylate-binding p 99.5 7E-14 2.4E-18 114.1 6.2 62 1-63 18-85 (89)
106 2cpx_A Hypothetical protein FL 99.4 1.1E-13 3.8E-18 118.4 7.2 66 1-66 37-108 (115)
107 2ek1_A RNA-binding protein 12; 99.4 4.2E-14 1.4E-18 117.0 4.3 62 1-62 27-94 (95)
108 2dit_A HIV TAT specific factor 99.4 1.4E-13 4.6E-18 119.3 7.6 63 3-65 40-104 (112)
109 2ki2_A SS-DNA binding protein 99.4 3.7E-14 1.3E-18 116.6 3.8 65 1-66 13-83 (90)
110 2d9o_A DNAJ (HSP40) homolog, s 99.4 1.7E-13 5.9E-18 119.9 8.1 63 1-65 29-92 (100)
111 2nlw_A Eukaryotic translation 99.4 8.5E-14 2.9E-18 119.1 6.0 62 2-63 34-100 (105)
112 1fjc_A Nucleolin RBD2, protein 99.4 4.9E-14 1.7E-18 117.1 4.4 65 1-65 28-93 (96)
113 1h2v_Z 20 kDa nuclear CAP bind 99.4 1.4E-13 4.8E-18 124.4 7.7 65 1-65 51-121 (156)
114 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 1.5E-13 5.2E-18 120.4 7.0 60 1-60 75-140 (140)
115 2krb_A Eukaryotic translation 99.4 6.9E-14 2.3E-18 113.8 4.4 57 2-58 20-81 (81)
116 3tyt_A Heterogeneous nuclear r 99.4 2.1E-13 7.3E-18 130.3 8.1 64 1-64 17-81 (205)
117 2dng_A Eukaryotic translation 99.4 2E-13 6.8E-18 115.4 7.0 64 1-66 27-96 (103)
118 2cq4_A RNA binding motif prote 99.4 1.2E-13 4.2E-18 118.6 5.8 63 1-64 37-105 (114)
119 2jwn_A Embryonic polyadenylate 99.4 1.7E-13 5.7E-18 119.1 6.3 64 1-65 48-117 (124)
120 3beg_B Splicing factor, argini 99.4 5E-13 1.7E-17 116.5 9.3 62 1-63 28-94 (115)
121 1x4e_A RNA binding motif, sing 99.4 5.9E-14 2E-18 114.3 3.0 62 1-62 17-84 (85)
122 2rs2_A Musashi-1, RNA-binding 99.4 3.1E-13 1.1E-17 116.8 7.7 65 1-66 37-107 (109)
123 2j76_E EIF-4B, EIF4B, eukaryot 99.4 1.8E-13 6.3E-18 115.8 6.0 62 1-64 31-99 (100)
124 1x5o_A RNA binding motif, sing 99.4 3.1E-13 1.1E-17 115.8 7.5 63 1-63 37-112 (114)
125 3egn_A RNA-binding protein 40; 99.4 1.5E-13 5.3E-18 122.5 5.8 65 1-65 57-132 (143)
126 1jmt_A Splicing factor U2AF 35 99.4 2E-13 6.8E-18 118.8 6.3 58 3-60 40-103 (104)
127 1x4b_A Heterogeneous nuclear r 99.4 2.3E-13 7.9E-18 117.2 6.7 65 1-66 39-109 (116)
128 2lea_A Serine/arginine-rich sp 99.4 1.9E-13 6.4E-18 123.0 6.4 66 1-66 59-130 (135)
129 2m2b_A RNA-binding protein 10; 99.4 1E-13 3.6E-18 122.8 4.6 64 1-65 35-110 (131)
130 2fc8_A NCL protein; structure 99.4 2E-13 6.8E-18 114.6 6.0 66 1-66 27-95 (102)
131 1s79_A Lupus LA protein; RRM, 99.4 3.4E-13 1.2E-17 117.0 7.4 61 1-62 23-88 (103)
132 1fj7_A Nucleolin RBD1, protein 99.4 3.5E-13 1.2E-17 113.2 7.3 64 1-65 29-97 (101)
133 3s6e_A RNA-binding protein 39; 99.4 2.6E-13 8.8E-18 121.2 6.8 61 3-63 31-93 (114)
134 3n9u_C Cleavage and polyadenyl 99.4 1.9E-13 6.5E-18 126.6 6.1 63 1-63 67-137 (156)
135 2dh8_A DAZ-associated protein 99.4 1.5E-13 5.1E-18 116.2 4.8 65 1-66 28-98 (105)
136 2dgw_A Probable RNA-binding pr 99.4 2.9E-13 9.8E-18 111.8 6.3 64 1-66 22-90 (91)
137 3u1l_A PRE-mRNA-splicing facto 99.4 1.9E-13 6.3E-18 136.8 6.0 65 2-66 156-232 (240)
138 2qfj_A FBP-interacting repress 99.4 4.4E-13 1.5E-17 123.3 8.0 66 1-66 137-208 (216)
139 3md3_A Nuclear and cytoplasmic 99.4 3.7E-13 1.2E-17 118.0 6.9 62 1-62 99-166 (166)
140 4f02_A Polyadenylate-binding p 99.4 2.8E-13 9.5E-18 127.9 6.0 63 1-63 115-181 (213)
141 1uaw_A Mouse-musashi-1; RNP-ty 99.4 2.7E-13 9.4E-18 107.9 4.8 59 1-60 12-76 (77)
142 2cqg_A TDP-43, TAR DNA-binding 99.4 9.5E-13 3.2E-17 110.9 7.4 64 1-66 27-96 (103)
143 1rk8_A CG8781-PA, CG8781-PA pr 99.4 6.3E-13 2.2E-17 122.0 6.7 66 1-66 84-155 (165)
144 3pgw_A U1-A; protein-RNA compl 99.4 1E-12 3.5E-17 127.1 8.3 62 1-62 219-282 (282)
145 2hzc_A Splicing factor U2AF 65 99.4 8.3E-13 2.8E-17 107.4 6.5 58 1-59 18-86 (87)
146 1iqt_A AUF1, heterogeneous nuc 99.4 4.4E-13 1.5E-17 106.5 4.6 59 1-60 11-75 (75)
147 1fxl_A Paraneoplastic encephal 99.3 8.1E-13 2.8E-17 116.0 6.4 77 1-77 14-96 (167)
148 2diu_A KIAA0430 protein; struc 99.3 1.2E-12 4.2E-17 116.2 7.5 62 1-66 21-87 (96)
149 2e44_A Insulin-like growth fac 99.3 2.4E-12 8.2E-17 106.9 8.8 64 1-64 27-93 (96)
150 3s7r_A Heterogeneous nuclear r 99.3 8.1E-13 2.8E-17 108.0 5.7 59 1-60 23-87 (87)
151 2lcw_A RNA-binding protein FUS 99.0 9.1E-14 3.1E-18 120.0 0.0 66 1-66 19-98 (116)
152 2e5g_A U6 snRNA-specific termi 99.3 1.2E-12 4.1E-17 109.2 6.7 64 1-65 20-84 (94)
153 3ue2_A Poly(U)-binding-splicin 99.3 8.5E-13 2.9E-17 118.3 5.8 60 3-62 39-108 (118)
154 2cjk_A Nuclear polyadenylated 99.3 1.4E-12 4.8E-17 115.4 7.2 62 1-63 99-166 (167)
155 1fje_B Nucleolin RBD12, protei 99.3 1.1E-12 3.9E-17 117.5 6.5 63 1-63 111-174 (175)
156 1b7f_A Protein (SXL-lethal pro 99.3 1.5E-12 5E-17 115.1 6.9 77 1-77 15-97 (168)
157 2g4b_A Splicing factor U2AF 65 99.3 9.4E-13 3.2E-17 117.1 5.7 61 1-61 106-172 (172)
158 2yh0_A Splicing factor U2AF 65 99.3 1.1E-12 3.7E-17 119.1 6.2 65 1-65 126-196 (198)
159 3q2s_C Cleavage and polyadenyl 99.3 6.7E-13 2.3E-17 129.5 5.1 63 1-63 80-150 (229)
160 1wg5_A Heterogeneous nuclear r 99.3 1.7E-12 5.9E-17 110.8 7.0 63 1-64 27-95 (104)
161 1wel_A RNA-binding protein 12; 99.3 4.2E-13 1.4E-17 117.6 3.1 62 1-63 37-104 (124)
162 2f3j_A RNA and export factor b 99.3 2.2E-12 7.4E-17 121.5 8.1 64 1-64 100-168 (177)
163 1qm9_A Polypyrimidine tract-bi 99.3 1.8E-12 6.3E-17 118.9 7.5 63 1-63 132-197 (198)
164 3md3_A Nuclear and cytoplasmic 99.3 3.5E-12 1.2E-16 111.8 8.8 65 1-65 12-81 (166)
165 3nmr_A Cugbp ELAV-like family 99.3 2.6E-12 8.8E-17 113.9 7.6 61 1-61 107-175 (175)
166 2adc_A Polypyrimidine tract-bi 99.3 3.5E-12 1.2E-16 121.6 8.8 63 1-63 163-228 (229)
167 2cpy_A RNA-binding protein 12; 99.3 1.2E-12 4E-17 113.6 4.8 63 1-64 27-95 (114)
168 2db1_A Heterogeneous nuclear r 99.3 1.1E-12 3.8E-17 115.0 4.2 62 1-63 29-98 (118)
169 3d2w_A TAR DNA-binding protein 99.3 3.6E-12 1.2E-16 107.0 7.0 60 1-64 23-85 (89)
170 1b7f_A Protein (SXL-lethal pro 99.3 4E-12 1.4E-16 112.3 7.6 60 1-60 101-168 (168)
171 1fxl_A Paraneoplastic encephal 99.3 4.3E-12 1.5E-16 111.3 7.5 60 1-60 100-167 (167)
172 3pgw_A U1-A; protein-RNA compl 99.3 5.7E-12 1.9E-16 121.9 8.4 65 1-65 21-92 (282)
173 2lmi_A GRSF-1, G-rich sequence 99.3 1.9E-12 6.3E-17 111.2 4.4 62 1-63 23-92 (107)
174 1wez_A HnRNP H', FTP-3, hetero 99.3 2.2E-12 7.6E-17 111.0 4.9 63 1-65 27-94 (102)
175 2qfj_A FBP-interacting repress 99.3 7.9E-12 2.7E-16 114.9 8.9 64 1-64 40-109 (216)
176 2g4b_A Splicing factor U2AF 65 99.3 6E-12 2E-16 111.9 7.4 76 1-77 16-102 (172)
177 2adc_A Polypyrimidine tract-bi 99.3 7.9E-12 2.7E-16 119.2 8.5 64 1-64 47-111 (229)
178 3tht_A Alkylated DNA repair pr 99.3 6.2E-12 2.1E-16 131.5 8.2 62 1-62 32-98 (345)
179 1qm9_A Polypyrimidine tract-bi 99.3 6E-12 2E-16 115.5 6.9 64 1-64 16-80 (198)
180 2hgl_A HNRPF protein, heteroge 99.2 2.9E-12 1E-16 117.2 4.3 62 1-63 56-125 (136)
181 2xs2_A Deleted in azoospermia- 99.2 1.9E-12 6.7E-17 108.8 2.6 62 1-64 21-87 (102)
182 2hgn_A Heterogeneous nuclear r 99.2 2.9E-12 1E-16 117.7 4.0 63 1-65 58-125 (139)
183 3sde_A Paraspeckle component 1 99.2 9.7E-12 3.3E-16 121.0 7.8 63 1-63 34-96 (261)
184 4f02_A Polyadenylate-binding p 99.2 8.9E-12 3E-16 117.6 7.2 64 1-64 27-96 (213)
185 3pgw_S U1-70K; protein-RNA com 99.2 1.7E-11 5.9E-16 130.4 9.6 65 1-65 114-184 (437)
186 2dnn_A RNA-binding protein 12; 99.2 1.3E-11 4.4E-16 108.8 6.9 61 1-63 28-93 (109)
187 2ghp_A U4/U6 snRNA-associated 99.2 1E-11 3.5E-16 120.7 6.9 62 1-63 223-291 (292)
188 1l3k_A Heterogeneous nuclear r 99.2 1E-11 3.5E-16 112.6 5.8 65 1-66 116-186 (196)
189 2dnl_A Cytoplasmic polyadenyla 99.2 3.1E-11 1.1E-15 104.6 8.3 58 1-61 20-86 (114)
190 3nmr_A Cugbp ELAV-like family 99.2 2E-11 6.8E-16 108.2 7.1 77 1-77 15-103 (175)
191 1wf0_A TDP-43, TAR DNA-binding 99.2 8.7E-12 3E-16 102.6 4.3 62 1-66 17-81 (88)
192 2yh0_A Splicing factor U2AF 65 99.2 1.7E-11 5.8E-16 111.3 6.6 63 1-64 16-89 (198)
193 3smz_A Protein raver-1, ribonu 99.2 1.4E-11 4.8E-16 119.3 6.3 63 2-64 198-265 (284)
194 1l3k_A Heterogeneous nuclear r 99.2 2.8E-11 9.6E-16 109.7 6.4 64 1-65 25-94 (196)
195 3dxb_A Thioredoxin N-terminall 99.2 3.3E-11 1.1E-15 114.4 7.1 60 3-62 143-212 (222)
196 3smz_A Protein raver-1, ribonu 99.1 6.5E-11 2.2E-15 114.6 8.0 62 1-63 34-95 (284)
197 1fje_B Nucleolin RBD12, protei 99.1 7.4E-11 2.5E-15 105.7 6.4 64 1-65 25-93 (175)
198 2dha_A FLJ20171 protein; RRM d 99.1 2.7E-11 9.4E-16 109.1 2.9 62 1-63 35-105 (123)
199 2hgm_A HNRPF protein, heteroge 99.1 4.9E-11 1.7E-15 108.3 4.2 60 1-62 54-120 (126)
200 2j8a_A Histone-lysine N-methyl 99.1 3.9E-11 1.3E-15 112.4 3.2 62 1-62 18-95 (136)
201 2ghp_A U4/U6 snRNA-associated 99.1 1.5E-10 5E-15 112.6 7.2 65 1-65 129-199 (292)
202 2voo_A Lupus LA protein; RNA-b 99.1 8.8E-11 3E-15 111.7 5.3 61 1-62 121-186 (193)
203 3tyt_A Heterogeneous nuclear r 99.1 1.7E-10 6E-15 110.2 7.0 60 1-60 135-204 (205)
204 2cjk_A Nuclear polyadenylated 99.0 1.5E-10 5.1E-15 102.4 5.8 62 1-64 15-82 (167)
205 2dnr_A Synaptojanin-1; RRM dom 99.0 5.2E-10 1.8E-14 98.6 6.6 57 4-63 30-86 (91)
206 3sde_A Paraspeckle component 1 99.0 6.4E-10 2.2E-14 108.2 6.6 64 1-64 108-180 (261)
207 1ufw_A Synaptojanin 2; RNP dom 98.7 8.8E-09 3E-13 91.6 4.9 55 4-61 39-93 (95)
208 1owx_A Lupus LA protein, SS-B, 98.5 2.1E-07 7.3E-12 85.1 8.3 61 1-61 31-94 (121)
209 1ow1_A Smart/HDAC1 associated 97.7 3.4E-05 1.2E-09 76.2 6.4 110 277-386 38-172 (195)
210 2l9w_A U4/U6 snRNA-associated- 97.6 7.5E-05 2.6E-09 68.7 6.8 59 1-59 33-96 (117)
211 1wey_A Calcipressin 1; structu 97.2 0.00036 1.2E-08 63.1 5.0 59 4-62 25-83 (104)
212 2i2y_A Fusion protein consists 96.3 0.0011 3.8E-08 59.3 1.4 40 23-63 11-51 (150)
213 2kn4_A Immunoglobulin G-bindin 95.4 0.0066 2.3E-07 54.3 2.7 37 23-59 11-47 (158)
214 1wwh_A Nucleoporin 35, nucleop 95.4 0.024 8.2E-07 52.3 6.2 55 4-59 38-93 (119)
215 3pq1_A Poly(A) RNA polymerase; 92.7 0.04 1.4E-06 60.3 2.2 44 1-44 64-108 (464)
216 3p3d_A Nucleoporin 53; structu 89.3 0.3 1E-05 45.9 4.3 57 4-61 21-97 (132)
217 2dhx_A Poly (ADP-ribose) polym 86.4 3.7 0.00013 37.3 9.3 64 1-68 20-88 (104)
218 1uw4_A UPF3X; nonsense mediate 83.0 2.7 9.1E-05 36.9 6.6 62 1-62 13-87 (91)
219 1whv_A Poly(A)-specific ribonu 76.7 4 0.00014 37.0 5.7 43 2-46 28-70 (100)
220 3ctr_A Poly(A)-specific ribonu 68.7 2.4 8.3E-05 38.4 2.4 43 2-46 18-60 (101)
221 2g0c_A ATP-dependent RNA helic 67.2 5.4 0.00018 32.3 4.0 54 5-61 17-75 (76)
222 2l08_A Regulator of nonsense t 63.5 6.9 0.00024 35.0 4.3 61 1-61 21-94 (97)
223 2ox0_A JMJC domain-containing 38.1 17 0.00058 39.2 3.0 45 328-381 31-77 (381)
224 3ts2_A Protein LIN-28 homolog 37.9 6.6 0.00023 36.7 -0.1 29 3-33 1-29 (148)
225 3dxt_A JMJC domain-containing 36.9 20 0.00069 38.4 3.3 48 327-383 12-61 (354)
226 2d0j_A Galactosylgalactosylxyl 33.5 26 0.00089 35.8 3.4 80 280-364 50-131 (246)
227 2lea_A Serine/arginine-rich sp 32.2 7.7 0.00026 34.5 -0.6 51 26-77 5-55 (135)
228 2v1n_A KIN17, protein KIN homo 26.6 25 0.00086 32.3 1.7 27 344-373 63-90 (111)
229 4b8c_D Glucose-repressible alc 23.1 33 0.0011 38.5 2.1 17 657-673 38-54 (727)
No 1
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-15 Score=126.63 Aligned_cols=66 Identities=21% Similarity=0.389 Sum_probs=62.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccC--CCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFN--DPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~--GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++.+.||||||+|.+.++|++|++.|||..|+ |++|+|+||+++...
T Consensus 29 ~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~~ 96 (97)
T 1why_A 29 TSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPSS 96 (97)
T ss_dssp CCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCCC
T ss_pred CCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCCC
Confidence 689999999999999999999888999999999999999999999999999 999999999987553
No 2
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=1.5e-15 Score=127.37 Aligned_cols=66 Identities=23% Similarity=0.403 Sum_probs=62.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+|++|++.++||||||+|.+.++|.+|++.|||..|+|++|+|+||+++...
T Consensus 25 ~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 25 MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred CCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 689999999999999999999999999999999999999999999999999999999999876543
No 3
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.60 E-value=8.1e-16 Score=134.64 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=59.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
+||++|+++|.+||+|.++++..+||||||+|.+.+||++|+++|||..++||+|+|++|+
T Consensus 19 ~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 19 IDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 6899999999999999999999999999999999999999999999999999999999995
No 4
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.60 E-value=8.6e-16 Score=131.61 Aligned_cols=62 Identities=26% Similarity=0.431 Sum_probs=58.3
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
+||++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||++
T Consensus 31 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 31 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 6899999999999999999854 4689999999999999999999999999999999999975
No 5
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.8e-15 Score=130.91 Aligned_cols=65 Identities=22% Similarity=0.261 Sum_probs=60.3
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCC--ccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGR--LFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk--~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++||+|++|++.+.||||||+|++.++|.+|++.|||. .|+|++|+|+||+.+..
T Consensus 27 ~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~ 93 (104)
T 1wex_A 27 VVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRI 93 (104)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSC
T ss_pred CCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCccc
Confidence 689999999999999999999999999999999999999999999875 49999999999986544
No 6
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.58 E-value=2.2e-15 Score=133.05 Aligned_cols=63 Identities=24% Similarity=0.259 Sum_probs=60.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCc--cCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRL--FNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~--f~GRrIrVefAk~~ 63 (724)
+||++|+++|++||+|++|++.+.||||||+|++.++|.+|++.|||.. |+|++|+|+||+.+
T Consensus 33 ~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 33 VVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred CCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 6899999999999999999999999999999999999999999999986 78999999999865
No 7
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=2.1e-15 Score=134.04 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=61.3
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcC--CccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG--RLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNG--k~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+|++|++.+.||||||+|++.++|++|++.|+| ..|+|++|+|+||+.+...
T Consensus 28 vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 28 VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp SCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 68999999999999999999999999999999999999999999874 7899999999999876544
No 8
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.5e-15 Score=127.70 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=60.7
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
++|++|+++|++||+|++|++.++||||||+|.+.++|.+|++.|||..|+|++|+|+||+++
T Consensus 39 ~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 39 ATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred cCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 689999999999999999999999999999999999999999999999999999999999863
No 9
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=3e-15 Score=125.73 Aligned_cols=65 Identities=12% Similarity=0.264 Sum_probs=62.0
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++||+|++|++.+.||||||+|.+.++|++|++.|||..|+|++|+|+||+.+..
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 27 ITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999987544
No 10
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=6.8e-15 Score=125.80 Aligned_cols=66 Identities=21% Similarity=0.464 Sum_probs=62.8
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|.+|++.+.||||||+|.+.++|.+|++.|||..|+|++|+|+||+.+...
T Consensus 37 ~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 37 LTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 689999999999999999999988999999999999999999999999999999999999877654
No 11
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=126.73 Aligned_cols=67 Identities=19% Similarity=0.330 Sum_probs=59.4
Q ss_pred CCHHHHHHHhhhcC-ceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhc-CCccCCCcEEEEeccCCCCCC
Q 004899 1 MDEQMLHNAMILFG-EIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQ-GRLFNDPRITIMFSSSELAPG 67 (724)
Q Consensus 1 VdEedLrelFS~FG-eI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLN-Gk~f~GRrIrVefAk~~~~pg 67 (724)
+||++|+++|++|| +|++|++. ++||||||+|.+.++|.+|++.|+ |..|+|++|+|+||+++....
T Consensus 13 ~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~~ 87 (91)
T 2lxi_A 13 ATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKIN 87 (91)
T ss_dssp CCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCCS
T ss_pred CCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCCC
Confidence 68999999999999 89999853 579999999999999999999985 567999999999998765543
No 12
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.56 E-value=3.1e-15 Score=130.87 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=59.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|++||+|++|++. ++||||||+|++.++|++|++.|||+.|+|++|+|++|+...
T Consensus 18 ~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~ 87 (110)
T 3s8s_A 18 VRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQ 87 (110)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTH
T ss_pred CCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 6899999999999999999863 578999999999999999999999999999999999997553
No 13
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=9.1e-15 Score=127.07 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=61.3
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|++||+|.+|++.++||||||+|.+.++|++|++.|||..|+|++|+|+||+...
T Consensus 22 ~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 22 TLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 5899999999999999999999999999999999999999999999999999999999998653
No 14
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=9e-15 Score=123.28 Aligned_cols=66 Identities=18% Similarity=0.316 Sum_probs=61.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecC----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++.+ +||||||+|.+.++|.+|++.|||..|+|++|+|+||+.....
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 27 VTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 68999999999999999999764 6899999999999999999999999999999999999876554
No 15
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=2.9e-15 Score=131.44 Aligned_cols=65 Identities=17% Similarity=0.131 Sum_probs=60.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCC--ccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGR--LFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk--~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||+|++|++.+.||||||+|++.++|.+|++.|||. .|+|++|+|+||+....
T Consensus 28 ~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 28 NLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp SHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred CCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 579999999999999999999999999999999999999999999975 49999999999986543
No 16
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.56 E-value=3.6e-15 Score=129.74 Aligned_cols=64 Identities=31% Similarity=0.472 Sum_probs=59.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
+||++|+++|++||+|++|++. .+||||||+|.+.++|++|+++|||..|+|++|+|++|+.+.
T Consensus 17 ~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 17 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 6899999999999999999865 358999999999999999999999999999999999997654
No 17
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=119.98 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=60.4
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ||||||+|.+.++|++|++.|||..|+|++|+|+||++....
T Consensus 20 ~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 20 ATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp CCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred CCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 6899999999999999999987 899999999999999999999999999999999999876554
No 18
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=120.37 Aligned_cols=66 Identities=29% Similarity=0.443 Sum_probs=60.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||+.+...
T Consensus 17 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 17 ITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred CCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 6899999999999999999864 36899999999999999999999999999999999999876654
No 19
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.55 E-value=1.4e-14 Score=122.64 Aligned_cols=64 Identities=30% Similarity=0.583 Sum_probs=60.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+|++|++. ||||||+|.+.++|.+|++.|||..|+|++|+|+||++....
T Consensus 23 ~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 23 VTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 6899999999999999999986 789999999999999999999999999999999999876554
No 20
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.3e-15 Score=121.38 Aligned_cols=61 Identities=25% Similarity=0.408 Sum_probs=59.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHh-cCCccCCCcEEEEecc
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGL-QGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaL-NGk~f~GRrIrVefAk 61 (724)
++|++|+++|++||+|.+|++.++||||||+|.+.++|.+|++.| ||..|+|++|+|+||+
T Consensus 24 ~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 24 ITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 589999999999999999999999999999999999999999999 9999999999999986
No 21
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=124.26 Aligned_cols=66 Identities=21% Similarity=0.370 Sum_probs=60.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec---CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY---PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~---~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+|++|++. .+||||||+|++.++|++|++.|||..|+|++|+|+||+..+..
T Consensus 34 ~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 34 IRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 102 (109)
T ss_dssp CCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCC
Confidence 6899999999999999999875 36899999999999999999999999999999999999876554
No 22
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9e-15 Score=123.05 Aligned_cols=65 Identities=14% Similarity=0.278 Sum_probs=59.9
Q ss_pred CCHHHHH----HHhhhcCceeEeeecCC---CCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLH----NAMILFGEIERIKSYPS---RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLr----elFS~FGeI~sVkt~~S---RGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+ ++|++||+|++|++... ||||||+|.+.++|.+|++.|||..|+|++|+|++|++...
T Consensus 21 ~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 21 LSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp SCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred CCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 5899999 99999999999997633 89999999999999999999999999999999999986654
No 23
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=121.55 Aligned_cols=66 Identities=23% Similarity=0.434 Sum_probs=60.7
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++.+ +||||||+|.+.++|.+|++.|||..|+|++|+|+||++....
T Consensus 24 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 24 TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp CCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 68999999999999999998753 6899999999999999999999999999999999999876543
No 24
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.4e-14 Score=124.74 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=65.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCCCCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSY 74 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk~~p~y~ 74 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|++|++.||| .|+|++|+|+||+....+.+..+.+.
T Consensus 29 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~~~~~~~~~~~ 107 (116)
T 2cqd_A 29 TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLGAKPRSLQTGFA 107 (116)
T ss_dssp CCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTTCCCCCCCCCCS
T ss_pred CCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCCCccccCCCcc
Confidence 6899999999999999999865 3689999999999999999999999 89999999999987766655545554
Q ss_pred CCC
Q 004899 75 SGT 77 (724)
Q Consensus 75 sG~ 77 (724)
.|.
T Consensus 108 ~g~ 110 (116)
T 2cqd_A 108 IGV 110 (116)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 25
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.54 E-value=6.4e-15 Score=119.81 Aligned_cols=63 Identities=21% Similarity=0.374 Sum_probs=57.5
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
++|++|+++|++||+|.+|++.. +||||||+|.+.++|++|++.|||..|+|++|+|+||+++
T Consensus 18 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 18 ITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 68999999999999999998643 5799999999999999999999999999999999999865
No 26
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=7.6e-15 Score=122.43 Aligned_cols=66 Identities=23% Similarity=0.402 Sum_probs=60.6
Q ss_pred CCHHHHHHHhhhcCceeEeeec---------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY---------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~---------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||+....+
T Consensus 17 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 17 TTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP 91 (98)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence 6899999999999999999865 45799999999999999999999999999999999999876554
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=1.7e-14 Score=121.72 Aligned_cols=66 Identities=20% Similarity=0.447 Sum_probs=60.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-------CCCeEEEEeCCHHHHHHHHHHh-cCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-------SRNYSFVEFRSVDEARRAKEGL-QGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-------SRGFAFVeF~s~EdA~kAIEaL-NGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++.+ +||||||+|.+.++|.+|++.| ||..|+|++|+|+||+++...
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 27 ANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred CCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence 68999999999999999998754 3899999999999999999999 999999999999999876543
No 28
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=9.3e-15 Score=132.08 Aligned_cols=66 Identities=17% Similarity=0.258 Sum_probs=61.4
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcC--CccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG--RLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNG--k~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+|++|++.+.||||||+|++.++|.+|++.||| ..|+|++|+|+||+.+...
T Consensus 43 vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~ 110 (119)
T 2ad9_A 43 VTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 110 (119)
T ss_dssp CCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCC
Confidence 68999999999999999999998999999999999999999999984 6899999999999876554
No 29
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.9e-14 Score=121.25 Aligned_cols=66 Identities=23% Similarity=0.421 Sum_probs=61.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecC----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++.. +||||||+|.+.++|++|++.|||..|+|++|+|+||+.+...
T Consensus 27 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 27 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp CCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 68999999999999999999763 4899999999999999999999999999999999999877654
No 30
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=8.4e-15 Score=127.55 Aligned_cols=66 Identities=17% Similarity=0.216 Sum_probs=60.7
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhc--CCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQ--GRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLN--Gk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++.+.||||||+|++.++|.+|++.|+ |..|+|++|+|+||+.+...
T Consensus 27 ~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 27 VTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp CCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCc
Confidence 6899999999999999999999999999999999999999999874 67899999999999866543
No 31
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=7.7e-15 Score=132.22 Aligned_cols=65 Identities=20% Similarity=0.348 Sum_probs=61.0
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCcc-----CCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLF-----NDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f-----~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||+|++|.+..+||||||+|++.++|++|+++|||++| .|++|.|+||+.-..
T Consensus 39 ~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p~ 108 (114)
T 2cq2_A 39 VSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQW 108 (114)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCcc
Confidence 68999999999999999999988999999999999999999999999998 799999999986544
No 32
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.54 E-value=8.8e-15 Score=118.06 Aligned_cols=63 Identities=30% Similarity=0.446 Sum_probs=58.7
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
++|++|+++|++||+|.+|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||+++
T Consensus 13 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 13 VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 5899999999999999999865 34899999999999999999999999999999999999865
No 33
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=2.1e-14 Score=119.95 Aligned_cols=66 Identities=17% Similarity=0.337 Sum_probs=60.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+.+...
T Consensus 20 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (99)
T 1whw_A 20 SSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEA 91 (99)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTT
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCccc
Confidence 6899999999999999999864 36799999999999999999999999999999999999877654
No 34
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.53 E-value=2.1e-14 Score=123.27 Aligned_cols=66 Identities=20% Similarity=0.353 Sum_probs=60.5
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|+.||+|++|++.. +||||||+|.+.++|++|++.|||..|+|++|+|+||+.....
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 27 ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 68999999999999999998653 4799999999999999999999999999999999999876554
No 35
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=122.71 Aligned_cols=66 Identities=26% Similarity=0.450 Sum_probs=61.2
Q ss_pred CCHHHHHHHhhhcCceeEeeec----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+++...
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2d9p_A 27 IDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEER 96 (103)
T ss_dssp CCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccC
Confidence 6899999999999999999976 56899999999999999999999999999999999999876543
No 36
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=1.1e-14 Score=122.16 Aligned_cols=66 Identities=26% Similarity=0.446 Sum_probs=60.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||++....
T Consensus 24 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2cqb_A 24 VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIK 95 (102)
T ss_dssp CCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCC
Confidence 6899999999999999999864 36899999999999999999999999999999999999876554
No 37
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=118.09 Aligned_cols=64 Identities=23% Similarity=0.387 Sum_probs=59.1
Q ss_pred CCHHHHHHHhhhcCceeEeeec-------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|++||+|.+|++. +++|||||+|.+.++|.+|++.|||..|+|++|+|++|++..
T Consensus 16 ~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 16 VTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred CCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 6899999999999999999863 278999999999999999999999999999999999997653
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=119.98 Aligned_cols=61 Identities=13% Similarity=0.263 Sum_probs=57.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+|||
T Consensus 28 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 28 LTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp SCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 5899999999999999999864 468999999999999999999999999999999999986
No 39
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=5.3e-15 Score=132.43 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=60.0
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcC--CccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG--RLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNG--k~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++||+|++|++.++||||||+|++.++|.+|++.||| ..|+|++|+|+||+....
T Consensus 38 ~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 38 YSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp CCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 58999999999999999999999999999999999999999999865 569999999999986544
No 40
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=1.4e-14 Score=128.71 Aligned_cols=65 Identities=23% Similarity=0.421 Sum_probs=62.1
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||+|.+|++.++||||||+|.+.++|.+|+++|||..|+|++|+|+||+....
T Consensus 49 ~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 49 MTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 68999999999999999999999999999999999999999999999999999999999987644
No 41
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.53 E-value=2.7e-14 Score=120.66 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=60.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCcc---CCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLF---NDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f---~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..+ +|++|+|.||+.+...
T Consensus 25 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 25 LDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp CCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 6899999999999999999865 3689999999999999999999999998 9999999999876543
No 42
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.4e-14 Score=121.57 Aligned_cols=64 Identities=20% Similarity=0.324 Sum_probs=59.8
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|.+|++. ||||||+|.+.++|.+|++.|||..|+|++|+|+||+....+
T Consensus 23 ~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 86 (96)
T 2kvi_A 23 VSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNARP 86 (96)
T ss_dssp CCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC-
T ss_pred CCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCCC
Confidence 5899999999999999999984 899999999999999999999999999999999999876654
No 43
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.53 E-value=1.2e-14 Score=117.83 Aligned_cols=61 Identities=28% Similarity=0.511 Sum_probs=57.3
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+
T Consensus 19 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 19 VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 5899999999999999999863 368999999999999999999999999999999999986
No 44
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.52 E-value=9.1e-15 Score=120.37 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=60.9
Q ss_pred CCHHHHHHHhhhcCceeEeeecC----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++.+ +||||||+|.+.++|++|++.|||..|+|++|+|+||+....+
T Consensus 20 ~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (92)
T 2dgv_A 20 FTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASGP 89 (92)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSSC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCCC
Confidence 58999999999999999998653 6899999999999999999999999999999999999876553
No 45
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.52 E-value=1.4e-14 Score=121.72 Aligned_cols=66 Identities=21% Similarity=0.390 Sum_probs=61.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+|++|++.+ +||||||+|.+.++|.+|++.|||..|+|++|+|+||+.....
T Consensus 12 ~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 12 AGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 68999999999999999999876 5999999999999999999999999999999999999876543
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=3.6e-14 Score=118.83 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++ |||..|+|++|+|+||+++...
T Consensus 22 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 22 CGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp CCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCccc
Confidence 6899999999999999999875 368999999999999999999 9999999999999999876543
No 47
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.3e-14 Score=120.27 Aligned_cols=66 Identities=27% Similarity=0.492 Sum_probs=60.4
Q ss_pred CCHHHHHHHhhhcCceeEe-eec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERI-KSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sV-kt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|.+| ++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||+++...
T Consensus 17 ~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 17 IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp CCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 6899999999999999999 754 35899999999999999999999999999999999999876554
No 48
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.52 E-value=1.8e-14 Score=120.40 Aligned_cols=65 Identities=22% Similarity=0.346 Sum_probs=60.0
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||++...
T Consensus 14 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 84 (96)
T 2x1f_A 14 QTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDI 84 (96)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSG
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCC
Confidence 6899999999999999999864 3589999999999999999999999999999999999987653
No 49
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=1.7e-14 Score=121.91 Aligned_cols=64 Identities=27% Similarity=0.428 Sum_probs=59.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|+.||+|.+|++. .+||||||+|.+.++|.+|++.|||..|+|++|+|+||+++.
T Consensus 35 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 35 ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred CCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 6899999999999999999864 358999999999999999999999999999999999998654
No 50
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.52 E-value=6e-15 Score=122.50 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=55.5
Q ss_pred CCHHHHHHHhhhcC--ceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFG--EIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FG--eI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++|| +|.+|++. ++||||||+|.+.++|++|++.|||..|+|++|+|.+|++...
T Consensus 13 ~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 13 TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp CCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred CCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 68999999999999 99999853 4689999999999999999999999999999999999986644
No 51
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=2.4e-14 Score=120.74 Aligned_cols=66 Identities=20% Similarity=0.219 Sum_probs=60.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+.+...
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 27 VSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 6899999999999999999864 36799999999999999999999999999999999999876543
No 52
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=2.2e-14 Score=120.30 Aligned_cols=66 Identities=15% Similarity=0.288 Sum_probs=60.6
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||++....
T Consensus 29 ~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 99 (100)
T 2do4_A 29 CTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGPSS 99 (100)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSCC
T ss_pred CCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 6899999999999999999865 35699999999999999999999999999999999999876543
No 53
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.52 E-value=2.4e-14 Score=120.80 Aligned_cols=66 Identities=23% Similarity=0.342 Sum_probs=60.4
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCC---CcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFND---PRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~G---RrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++.. +||||||+|.+.++|++|++.|||..|.| ++|+|+||+.+...
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 27 QSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence 68999999999999999998763 48999999999999999999999999998 99999999876543
No 54
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=1.8e-14 Score=121.49 Aligned_cols=66 Identities=14% Similarity=0.305 Sum_probs=60.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||+..+..
T Consensus 25 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 25 TSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRD 96 (103)
T ss_dssp CCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCC
Confidence 6899999999999999999864 46899999999999999999999999999999999999876543
No 55
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.51 E-value=2.4e-14 Score=121.44 Aligned_cols=62 Identities=19% Similarity=0.315 Sum_probs=58.7
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|++||+|.+|++ .||||||+|.+.++|.+|++.|||..|+|++|+|+||+...
T Consensus 35 ~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 96 (97)
T 2xnq_A 35 VSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSNA 96 (97)
T ss_dssp CCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCCC
T ss_pred CCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCCC
Confidence 589999999999999999998 49999999999999999999999999999999999998653
No 56
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=3e-14 Score=120.95 Aligned_cols=66 Identities=14% Similarity=0.343 Sum_probs=61.0
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhc------CCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQ------GRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLN------Gk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|+.||+|++|++. ++||||||+|.+.++|.+|++.|| |..|+|++|+|+||+++...
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 27 SEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence 6899999999999999999865 469999999999999999999999 99999999999999876554
No 57
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.4e-14 Score=119.51 Aligned_cols=62 Identities=32% Similarity=0.474 Sum_probs=58.2
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+.
T Consensus 27 ~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 27 TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 6899999999999999999864 4589999999999999999999999999999999999985
No 58
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.2e-14 Score=122.42 Aligned_cols=66 Identities=23% Similarity=0.406 Sum_probs=60.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+++...
T Consensus 27 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 27 TRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp CCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred CCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 6899999999999999999864 35799999999999999999999999999999999999876554
No 59
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=3.7e-14 Score=117.65 Aligned_cols=64 Identities=23% Similarity=0.415 Sum_probs=59.9
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. |+||||+|.+.++|.+|++.|||..|+|++|+|+||+.+...
T Consensus 22 ~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 22 CTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp CCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred CCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 6899999999999999999987 779999999999999999999999999999999999876543
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4.3e-14 Score=120.78 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=60.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++.. +||||||+|.+.++|++|++.|||..|+|++|+|+||+.....
T Consensus 27 ~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 97 (114)
T 2do0_A 27 VGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPK 97 (114)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCCC
Confidence 68999999999999999998653 4899999999999999999999999999999999999865443
No 61
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=1.5e-14 Score=119.98 Aligned_cols=65 Identities=18% Similarity=0.149 Sum_probs=58.4
Q ss_pred CCHHHHHHHhhhcCc-eeEeeecCCCCeEEEEeCCHHHHHHHHHHhcC-CccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGE-IERIKSYPSRNYSFVEFRSVDEARRAKEGLQG-RLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGe-I~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNG-k~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+ |..+.+ .+||||||+|.+.++|++|++.||| ..|+|++|+|+||+++...
T Consensus 20 ~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 20 VTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp CCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred CCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 689999999999999 555554 5899999999999999999999999 9999999999999876544
No 62
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=3.5e-14 Score=129.01 Aligned_cols=65 Identities=23% Similarity=0.312 Sum_probs=59.4
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCe-EEEEeCCHHHHHHHHHHhcCCccCC--CcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNY-SFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGF-AFVeF~s~EdA~kAIEaLNGk~f~G--RrIrVefAk~~~~ 65 (724)
|+|++|+++|++||+|++|++++.+|| |||+|.+.++|.+|+++|||..|.| ++|+|+||+...-
T Consensus 37 vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l 104 (124)
T 2e5i_A 37 ITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRL 104 (124)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcc
Confidence 689999999999999999998755697 9999999999999999999999988 6899999987643
No 63
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.50 E-value=2e-14 Score=124.57 Aligned_cols=64 Identities=23% Similarity=0.485 Sum_probs=59.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ||||||+|.+.++|++|++.|||..|+|++|+|+||+.....
T Consensus 43 ~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 43 VQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp CCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC--
T ss_pred CCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCCC
Confidence 6899999999999999999987 999999999999999999999999999999999999876543
No 64
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.9e-14 Score=118.79 Aligned_cols=65 Identities=17% Similarity=0.263 Sum_probs=58.3
Q ss_pred CCHHHHHHHhhhcCcee-EeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIE-RIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~-sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|+.||+|. .|.+.++||||||+|.+.++|.+|++.|||..|+|++|+|+||++++.
T Consensus 31 ~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 96 (97)
T 2e5j_A 31 ARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQRD 96 (97)
T ss_dssp CCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCCC
T ss_pred CcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 68999999999999996 333457899999999999999999999999999999999999987643
No 65
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.50 E-value=6.5e-14 Score=122.53 Aligned_cols=66 Identities=20% Similarity=0.361 Sum_probs=60.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++.. +||||||+|.+.++|++|++.|||..|+|++|+|+||++....
T Consensus 19 ~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 19 TNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp CCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCS
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCC
Confidence 68999999999999999998754 5799999999999999999999999999999999999876543
No 66
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=3.7e-14 Score=117.18 Aligned_cols=63 Identities=21% Similarity=0.313 Sum_probs=59.4
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||+|++|++. |+||||+|.+.++|++|++.|||..|+|++|+|+||++...
T Consensus 21 ~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 21 CTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 6899999999999999999987 77999999999999999999999999999999999987644
No 67
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.50 E-value=1.5e-14 Score=124.88 Aligned_cols=65 Identities=11% Similarity=0.239 Sum_probs=59.4
Q ss_pred CCHHHHH---HHhhhcCceeEeeec---------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLH---NAMILFGEIERIKSY---------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLr---elFS~FGeI~sVkt~---------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+ ++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||+.+..
T Consensus 27 ~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~ 103 (111)
T 2cpi_A 27 LADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYC 103 (111)
T ss_dssp TCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSC
T ss_pred CCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccc
Confidence 5899999 999999999999865 3458999999999999999999999999999999999987653
No 68
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.50 E-value=1.9e-14 Score=123.20 Aligned_cols=63 Identities=17% Similarity=0.367 Sum_probs=59.4
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++||+|++|++ +||||||+|++.++|++|++.|||..|+|++|+|+||+..+.
T Consensus 40 ~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 40 VKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp CCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 589999999999999999999 799999999999999999999999999999999999985543
No 69
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.50 E-value=1.9e-14 Score=119.02 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=58.0
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
++|++|+++|++||+|++|++.. +||||||+|.+.++|.+|++.|||..|+|++|+|+||+.
T Consensus 28 ~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 28 VREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 58999999999999999998753 479999999999999999999999999999999999974
No 70
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.50 E-value=1.4e-14 Score=124.73 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=55.9
Q ss_pred CCHHHHHHHhhhcCc--eeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCc----cCCCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGE--IERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRL----FNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGe--I~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~----f~GRrIrVefAk~ 62 (724)
+||++|+++|++||. |.+|++ .++||||||+|.+.++|.+|++.|||.. |+||+|+|+||+.
T Consensus 21 ~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 21 TVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 689999999999996 567764 3579999999999999999999999984 8999999999985
No 71
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.50 E-value=3.5e-14 Score=125.49 Aligned_cols=66 Identities=32% Similarity=0.480 Sum_probs=60.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|+.||+|++|++. ++||||||+|.+.++|.+|+++|||..|+|++|+|+||+.....
T Consensus 54 ~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 54 VDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 6899999999999999999864 35899999999999999999999999999999999999876543
No 72
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.50 E-value=2.9e-14 Score=131.20 Aligned_cols=65 Identities=20% Similarity=0.365 Sum_probs=60.1
Q ss_pred CCHHHHHHHhhhcCceeEeeec-CCCCe-EEEEeCCHHHHHHHHHHhcCCccCC--CcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-PSRNY-SFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-~SRGF-AFVeF~s~EdA~kAIEaLNGk~f~G--RrIrVefAk~~~~ 65 (724)
|||++|+++|++||+|.+|++. +.||| |||+|.+.++|++|+++|||+.|.| ++|+|+||+...-
T Consensus 40 vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 40 VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp CCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred CCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 6899999999999999999875 46788 9999999999999999999999998 8999999997654
No 73
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.49 E-value=4e-14 Score=135.02 Aligned_cols=65 Identities=20% Similarity=0.316 Sum_probs=59.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec--CCCCeEEEEeCCHHHHHHHHHHhcCCccCC--CcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~--~SRGFAFVeF~s~EdA~kAIEaLNGk~f~G--RrIrVefAk~~~~ 65 (724)
|||++|+++|++||+|++|+++ +.||||||+|++.++|++|+++|||+.|.| ++|+|+||+.+..
T Consensus 58 vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l 126 (164)
T 1sjr_A 58 VTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 126 (164)
T ss_dssp CCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCcc
Confidence 6899999999999999999975 357899999999999999999999999965 9999999997643
No 74
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.49 E-value=2.4e-14 Score=126.94 Aligned_cols=63 Identities=19% Similarity=0.023 Sum_probs=58.7
Q ss_pred CCHHHHHHHhhhcC-ceeEeeec--CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFG-EIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FG-eI~sVkt~--~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
++|++|+++|++|| +|+.|++. ++||||||+|++.++|++|++.|||..|+|++|+|++|+..
T Consensus 40 ~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 40 CSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp CCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 68999999999999 99999874 58999999999999999999999999999999999999754
No 75
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=2.5e-14 Score=123.46 Aligned_cols=63 Identities=24% Similarity=0.434 Sum_probs=59.1
Q ss_pred CCHHHHHHHhhhcCceeEeeecC----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
++|++|+++|++||+|++|++.. +||||||+|.+.++|++|++.|||..|+|++|+|+||+.+
T Consensus 41 ~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 41 FRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp CCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 68999999999999999999753 5899999999999999999999999999999999999865
No 76
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.49 E-value=2.9e-14 Score=118.40 Aligned_cols=65 Identities=26% Similarity=0.391 Sum_probs=60.2
Q ss_pred CCHHHHH----HHhhhcCceeEeeec---CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLH----NAMILFGEIERIKSY---PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLr----elFS~FGeI~sVkt~---~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+ ++|++||+|.+|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+++..
T Consensus 20 ~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (97)
T 1nu4_A 20 IKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 91 (97)
T ss_dssp SCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCT
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCc
Confidence 5889999 999999999999875 5789999999999999999999999999999999999987653
No 77
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.49 E-value=4.4e-14 Score=121.54 Aligned_cols=66 Identities=20% Similarity=0.350 Sum_probs=60.2
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||+++...
T Consensus 37 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 37 FGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp CCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence 6899999999999999999864 35699999999999999999999999999999999999876543
No 78
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.49 E-value=2.9e-14 Score=120.67 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=57.8
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+
T Consensus 41 ~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 41 VSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 6899999999999999999865 468999999999999999999999999999999999986
No 79
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.49 E-value=7.9e-14 Score=121.68 Aligned_cols=65 Identities=15% Similarity=0.239 Sum_probs=60.3
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++||+|++|++.. +||||||+|.+.++|++|++.|||..|+|++|+|+||.....
T Consensus 47 ~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 116 (124)
T 2kt5_A 47 VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQID 116 (124)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTC
T ss_pred CCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 68999999999999999998753 789999999999999999999999999999999999987554
No 80
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.49 E-value=3.9e-14 Score=123.91 Aligned_cols=62 Identities=21% Similarity=0.315 Sum_probs=57.4
Q ss_pred CHHHHHHHhhhcCceeEeeec-------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 2 DEQMLHNAMILFGEIERIKSY-------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~-------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+|++|+++|++||+|++|++. ++||||||+|.+.++|.+|+++|||+.|+||+|+|+||...
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~~ 94 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNLD 94 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCHH
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCHH
Confidence 589999999999999999864 46899999999999999999999999999999999999753
No 81
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.49 E-value=5.1e-14 Score=126.03 Aligned_cols=64 Identities=31% Similarity=0.494 Sum_probs=59.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||+.++
T Consensus 58 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 58 TTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 6899999999999999999864 578999999999999999999999999999999999998754
No 82
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.2e-14 Score=120.01 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=60.5
Q ss_pred CCHHHHHHHhhhcCc-eeEeeec-------CCCCeEEEEeCCHHHHHHHHHHhc--CCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGE-IERIKSY-------PSRNYSFVEFRSVDEARRAKEGLQ--GRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGe-I~sVkt~-------~SRGFAFVeF~s~EdA~kAIEaLN--Gk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+ |++|++. ++||||||+|.+.++|.+|++.|| +..|+|++|+|+||+++..+
T Consensus 20 ~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 20 KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp SCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred CCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 689999999999999 9999876 689999999999999999999996 59999999999999876554
No 83
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.48 E-value=5.6e-14 Score=122.30 Aligned_cols=66 Identities=27% Similarity=0.455 Sum_probs=60.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+|++|++. .++|||||+|.+.++|++|++.|||..|+|++|+|+||+....+
T Consensus 34 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 34 ATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 6899999999999999999864 34899999999999999999999999999999999999866544
No 84
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.48 E-value=4.8e-14 Score=120.13 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++||+|++|++. .+||||||+|.+.++|.+|++.|||..|+|++|+|+||+.+..
T Consensus 38 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 38 AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 5899999999999999999864 3579999999999999999999999999999999999986543
No 85
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.48 E-value=1.9e-14 Score=122.47 Aligned_cols=61 Identities=15% Similarity=0.289 Sum_probs=57.0
Q ss_pred CHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCC-CcEEEEeccC
Q 004899 2 DEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFND-PRITIMFSSS 62 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~G-RrIrVefAk~ 62 (724)
+|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+| ++|+|.+|++
T Consensus 25 ~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 25 LKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp HHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred HHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 689999999999999999853 478999999999999999999999999999 9999999975
No 86
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=5e-14 Score=118.61 Aligned_cols=66 Identities=21% Similarity=0.322 Sum_probs=60.6
Q ss_pred CCHHHHHHHhhh-cCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCc-cCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMIL-FGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRL-FNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~-FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~-f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++ ||+|++|++. ++||||||+|.+.++|.+|++.|||.. |+|++|+|+||+++...
T Consensus 21 ~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 21 VDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp CCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred CCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence 689999999999 9999999865 358999999999999999999999999 99999999999876554
No 87
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=8.7e-14 Score=119.30 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=60.0
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCC-----CcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFND-----PRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~G-----RrIrVefAk~~~~ 65 (724)
++|++|+++|++||+|++|++... |||||+|++.++|++|++.|||..|+| +.|+|++|+++..
T Consensus 27 ~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 27 GSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred CCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 689999999999999999998765 999999999999999999999999999 9999999987544
No 88
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.2e-14 Score=119.52 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=59.8
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++||+|.+|++. .+||||||+|.+.++|.+|++.|||..|+|++|+|+||+.+..
T Consensus 20 ~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 90 (104)
T 1p1t_A 20 ATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKN 90 (104)
T ss_dssp SCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTH
T ss_pred CCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccc
Confidence 5899999999999999999865 2489999999999999999999999999999999999987654
No 89
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.48 E-value=5.6e-14 Score=126.25 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=60.3
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
+||++|+++|++||+|++|++.+ +||||||+|.+.++|.+|++.|||..|+|++|+|+||++++
T Consensus 85 ~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 85 GNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 58999999999999999999875 49999999999999999999999999999999999998764
No 90
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.9e-14 Score=126.88 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=58.1
Q ss_pred CCHHHHH----HHhhhcCceeEeeec---CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLH----NAMILFGEIERIKSY---PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLr----elFS~FGeI~sVkt~---~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+ ++|++||+|.+|.+. ++||||||+|.+.++|.+|++.|||..|.|++|+|+||+.+..
T Consensus 41 ~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~ 112 (127)
T 2a3j_A 41 VPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQS 112 (127)
T ss_dssp SCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCH
T ss_pred CCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcch
Confidence 4677765 799999999999864 6799999999999999999999999999999999999986543
No 91
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.47 E-value=2.7e-14 Score=123.05 Aligned_cols=61 Identities=21% Similarity=0.427 Sum_probs=56.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+|||
T Consensus 52 ~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 52 FTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp CCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 6899999999999999999864 458999999999999999999999999999999999986
No 92
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1e-13 Score=116.35 Aligned_cols=63 Identities=25% Similarity=0.522 Sum_probs=59.1
Q ss_pred CCHHHHHHHhhhc--CceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILF--GEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~F--GeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++| |+|.+|++. ||||||+|.+.++|.+|++.|||..|+|++|+|+||++...
T Consensus 27 ~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 27 TSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp CCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred CCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 6899999999999 999999874 89999999999999999999999999999999999987654
No 93
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.47 E-value=4.9e-14 Score=118.33 Aligned_cols=61 Identities=20% Similarity=0.319 Sum_probs=56.7
Q ss_pred CCHHHHHHHhhhcCceeE--------eeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004899 1 MDEQMLHNAMILFGEIER--------IKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~s--------Vkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
++|++|+++|++||+|++ |++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+
T Consensus 25 ~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 25 VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp CCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 689999999999999999 8754 357999999999999999999999999999999999985
No 94
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.47 E-value=5.4e-14 Score=121.67 Aligned_cols=64 Identities=27% Similarity=0.434 Sum_probs=59.3
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+++.
T Consensus 38 ~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 38 ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 6899999999999999999864 357999999999999999999999999999999999998653
No 95
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.3e-14 Score=119.51 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=59.8
Q ss_pred CCHHHHHHHhhhcCcee--------Eeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIE--------RIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~--------sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|. +|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+.+...
T Consensus 27 ~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 27 VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp CCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred CCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 68999999999999999 57754 35899999999999999999999999999999999999876554
No 96
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.47 E-value=9.7e-14 Score=124.79 Aligned_cols=66 Identities=17% Similarity=0.388 Sum_probs=60.8
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|.||+..+.+
T Consensus 82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 153 (158)
T 2kn4_A 82 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 153 (158)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 6899999999999999999854 47899999999999999999999999999999999999876544
No 97
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=8.4e-14 Score=117.82 Aligned_cols=64 Identities=14% Similarity=0.258 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec-------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|+.|| |++|++. ++||||||+|.+.++|++|+ +|||..|+|++|+|+||+.+...
T Consensus 27 ~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 27 VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp CCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCC
T ss_pred CCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCC
Confidence 68999999999999 9999863 45899999999999999999 99999999999999999876553
No 98
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.46 E-value=7.7e-14 Score=121.82 Aligned_cols=61 Identities=25% Similarity=0.438 Sum_probs=56.2
Q ss_pred HHHHHHHhhhcCceeEeeec--------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 3 EQMLHNAMILFGEIERIKSY--------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~--------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+++|+++|++||+|++|++. ++||||||+|++.++|.+|+++|||+.|+||+|+|+|+..+
T Consensus 29 ~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 29 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPD 97 (105)
T ss_dssp HHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred HHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHH
Confidence 58999999999999999964 36899999999999999999999999999999999998643
No 99
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=7.9e-14 Score=117.15 Aligned_cols=66 Identities=21% Similarity=0.305 Sum_probs=58.6
Q ss_pred CCHHHHHHHhhhcCceeEee--ecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIK--SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVk--t~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|.-++ ..++||||||+|.+.++|++|++.|||..|+|++|+|+||+.+...
T Consensus 27 ~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 27 ATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 94 (101)
T ss_dssp CCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred CCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence 68999999999999994333 2357999999999999999999999999999999999999877554
No 100
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=4.1e-14 Score=118.01 Aligned_cols=63 Identities=17% Similarity=0.198 Sum_probs=57.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
++|++|+++|++||+|+++++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||+..
T Consensus 27 ~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 27 VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp CCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred CCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 6899999999999999877643 46899999999999999999999999999999999999854
No 101
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.46 E-value=4.5e-14 Score=116.79 Aligned_cols=63 Identities=11% Similarity=0.207 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|++| +|++|++.++||||||+|.+.++|++|++.|||..|+|++|+|+||..+.
T Consensus 17 ~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 79 (88)
T 1wg1_A 17 SNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDA 79 (88)
T ss_dssp CCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCc
Confidence 6899999999999 99999988899999999999999999999999999999999999997653
No 102
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=6.3e-14 Score=117.06 Aligned_cols=65 Identities=22% Similarity=0.406 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhcCcee-Eeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCc----EEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIE-RIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPR----ITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~-sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRr----IrVefAk~~~~ 65 (724)
++|++|+++|++||+|. +|++. ++||||||+|.+.++|++|++.|||..|+|+. |+|+||+....
T Consensus 21 ~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~~ 96 (99)
T 2div_A 21 MDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSGP 96 (99)
T ss_dssp CCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCSS
T ss_pred CCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCCC
Confidence 68999999999999999 99864 35699999999999999999999999999999 99999987654
No 103
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.45 E-value=1.4e-13 Score=118.09 Aligned_cols=65 Identities=15% Similarity=0.333 Sum_probs=59.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec---CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY---PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~---~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++||.|.+|++. .+||||||+|.+.++|.+|++.|||..|+|++|+|+||++...
T Consensus 20 ~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 20 ITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 6899999999999999999874 4689999999999999999999999999999999999976543
No 104
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.45 E-value=7.4e-14 Score=111.28 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=55.0
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
++|++|+++|++||+|.+|++. ++||||||+|.+.++|++|++ |||..|+|++|+|.+|
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 11 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999854 468999999999999999998 9999999999999987
No 105
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.45 E-value=7e-14 Score=114.13 Aligned_cols=62 Identities=16% Similarity=0.380 Sum_probs=57.6
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
++|++|+++|+.||+|++|++. ++||||||+|.+.++|++|+ .|||..|+|++|+|++|+..
T Consensus 18 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 18 ATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp CCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 5899999999999999999854 45899999999999999999 99999999999999999864
No 106
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.1e-13 Score=118.44 Aligned_cols=66 Identities=18% Similarity=0.232 Sum_probs=58.7
Q ss_pred CCHHHHHHHhhhcCcee----Eee--ecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIE----RIK--SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~----sVk--t~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+|+ .++ +.++||||||+|.+.++|.+|++.|||..|+|++|+|+||+.....
T Consensus 37 ~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 108 (115)
T 2cpx_A 37 VTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 108 (115)
T ss_dssp CCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCC
T ss_pred CCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCC
Confidence 68999999999999994 444 3467899999999999999999999999999999999999876543
No 107
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.44 E-value=4.2e-14 Score=117.02 Aligned_cols=62 Identities=19% Similarity=0.159 Sum_probs=56.6
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|++|+.
T Consensus 27 ~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 27 VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp CCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 6899999999999999877643 4689999999999999999999999999999999999874
No 108
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.4e-13 Score=119.35 Aligned_cols=63 Identities=24% Similarity=0.324 Sum_probs=57.8
Q ss_pred HHHHHHHhhhcCceeEeeec--CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 3 EQMLHNAMILFGEIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~--~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
|++|+++|++||+|++|.+. .+||||||+|.+.++|.+|++.|||+.|+|++|+|+||++...
T Consensus 40 e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 40 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp HHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred HHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 68999999999999999764 4799999999999999999999999999999999999976543
No 109
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.44 E-value=3.7e-14 Score=116.62 Aligned_cols=65 Identities=15% Similarity=0.257 Sum_probs=55.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.+ |.+|++.|||..|+|++|+|++|.....+
T Consensus 13 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 13 ATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp SSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC------
T ss_pred CCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 5899999999999999999864 46899999999999 99999999999999999999999876543
No 110
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=1.7e-13 Score=119.86 Aligned_cols=63 Identities=19% Similarity=0.263 Sum_probs=57.1
Q ss_pred CCHHHHHHHhhhcCceeEeeec-CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|++||+|++|++. ++||||||+|++.++|++|++.++| +.|++|+|+||+....
T Consensus 29 ~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 29 YSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 5799999999999999999975 7899999999999999999999665 6899999999986643
No 111
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.44 E-value=8.5e-14 Score=119.10 Aligned_cols=62 Identities=18% Similarity=0.262 Sum_probs=57.5
Q ss_pred CHHHHHHHhhhcCceeEeeec----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCC-cEEEEeccCC
Q 004899 2 DEQMLHNAMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDP-RITIMFSSSE 63 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GR-rIrVefAk~~ 63 (724)
+|++|+++|++||+|.+|++. ++||||||+|.+.++|.+|++.|||..|+|+ +|+|++|+..
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 579999999999999999865 4689999999999999999999999999999 9999999743
No 112
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.44 E-value=4.9e-14 Score=117.11 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=59.2
Q ss_pred CCHHHHHHHhhhcCceeEee-ecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIK-SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVk-t~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|+.||+|..|. ..++||||||+|.+.++|.+|++.|||..|+|++|+|+||+++..
T Consensus 28 ~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 28 ITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp CCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 68999999999999999883 345789999999999999999999999999999999999986644
No 113
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.44 E-value=1.4e-13 Score=124.43 Aligned_cols=65 Identities=20% Similarity=0.262 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||+|++|++. .+||||||+|.+.++|++|++.|||..|+|++|+|+||+....
T Consensus 51 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 51 TTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 6899999999999999999864 3579999999999999999999999999999999999986543
No 114
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.43 E-value=1.5e-13 Score=120.36 Aligned_cols=60 Identities=28% Similarity=0.519 Sum_probs=55.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||
T Consensus 75 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 75 VDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5899999999999999999864 46899999999999999999999999999999999987
No 115
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.42 E-value=6.9e-14 Score=113.82 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=52.9
Q ss_pred CHHHHHHHhhhcCceeEeeec----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCC-cEEEE
Q 004899 2 DEQMLHNAMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDP-RITIM 58 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GR-rIrVe 58 (724)
+|++|+++|++||+|.+|++. ++||||||+|.+.++|.+|++.|||..|+|+ +|+|+
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred HHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 579999999999999999865 4689999999999999999999999999999 99874
No 116
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.42 E-value=2.1e-13 Score=130.33 Aligned_cols=64 Identities=19% Similarity=0.303 Sum_probs=60.1
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
|||++|+++|++||+|.+|++.+ .||||||+|.+.++|++|++.|||..|.|++|+|.||+.+.
T Consensus 17 ~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~ 81 (205)
T 3tyt_A 17 MNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPA 81 (205)
T ss_dssp CCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSC
T ss_pred CCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCc
Confidence 68999999999999999999875 58999999999999999999999999999999999998653
No 117
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.42 E-value=2e-13 Score=115.36 Aligned_cols=64 Identities=16% Similarity=0.283 Sum_probs=58.0
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++|| |++|++. ++||||||+|.+.++|++|+ +|||..|+|++|+|+||+.....
T Consensus 27 ~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 27 TVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp CCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCC
T ss_pred CCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCC
Confidence 68999999999997 9999864 35799999999999999999 99999999999999999876543
No 118
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.2e-13 Score=118.57 Aligned_cols=63 Identities=21% Similarity=0.329 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|+.||+|++|++. ++||||||+|.+.++|++|+ .|||..|+|++|+|+||+.+.
T Consensus 37 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 37 IRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp CCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHH
T ss_pred CCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCc
Confidence 6899999999999999999864 57899999999999999999 999999999999999997653
No 119
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.41 E-value=1.7e-13 Score=119.05 Aligned_cols=64 Identities=19% Similarity=0.366 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|+.||+|++|++. .+||||||+|.+.++|.+|+ +|||..|+|++|+|+||+....
T Consensus 48 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 48 STAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMP 117 (124)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCCS
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCCC
Confidence 6899999999999999999864 45899999999999999999 8999999999999999986543
No 120
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.41 E-value=5e-13 Score=116.52 Aligned_cols=62 Identities=19% Similarity=0.207 Sum_probs=55.4
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCc-----EEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPR-----ITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRr-----IrVefAk~~ 63 (724)
++|++|+++|++||+|++|++... |||||+|++.++|++||++|||..|+|++ |+|+.++..
T Consensus 28 ~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 28 GSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp CCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred CCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 689999999999999999998755 99999999999999999999999999999 666666543
No 121
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.9e-14 Score=114.26 Aligned_cols=62 Identities=24% Similarity=0.275 Sum_probs=57.0
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
++|++|+++|++||+|.+|++. ++||||||+|.+.++|.+|++.|||..|+|+.|+|.+++.
T Consensus 17 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~s 84 (85)
T 1x4e_A 17 TTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPSS 84 (85)
T ss_dssp CCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCCC
Confidence 6899999999999999999864 3589999999999999999999999999999999988763
No 122
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.41 E-value=3.1e-13 Score=116.81 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=58.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|+.||+|++|++. ++||||||+|.+.++|.+|++.| |..|+|++|+|++|+.+...
T Consensus 37 ~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~~~ 107 (109)
T 2rs2_A 37 TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRRAQ 107 (109)
T ss_dssp CCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCCCC
T ss_pred CCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCCCC
Confidence 6899999999999999999864 46899999999999999999987 59999999999999876554
No 123
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.41 E-value=1.8e-13 Score=115.84 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=56.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec-------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|+.|| |++|++. ++||||||+|.+.++|.+|+ +|||..|+|++|+|++|+.+.
T Consensus 31 ~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 31 VTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp CSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred CCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 58999999999999 9999864 35899999999999999999 999999999999999998653
No 124
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3.1e-13 Score=115.79 Aligned_cols=63 Identities=24% Similarity=0.400 Sum_probs=57.6
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCcc--------CCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLF--------NDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f--------~GRrIrVefAk~~ 63 (724)
++|++|+++|+.||+|++|++. ++||||||+|.+.++|++|++.|||+.| .|++|+|.||++.
T Consensus 37 ~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 37 MDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 6899999999999999999864 3589999999999999999999999999 5788999999854
No 125
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.41 E-value=1.5e-13 Score=122.52 Aligned_cols=65 Identities=14% Similarity=0.185 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhhcCceeEe-----------eecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERI-----------KSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sV-----------kt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||+|.+| ++.++||||||+|.+.++|.+|++.|||..|+|++|+|+||+....
T Consensus 57 ~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 57 VQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARP 132 (143)
T ss_dssp CCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC
T ss_pred CCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 6899999999999999764 3457899999999999999999999999999999999999986543
No 126
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.41 E-value=2e-13 Score=118.81 Aligned_cols=58 Identities=26% Similarity=0.387 Sum_probs=52.5
Q ss_pred HHHHHHHh-hhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004899 3 EQMLHNAM-ILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 3 EedLrelF-S~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
+++|+++| ++||+|++|++.+ +||||||+|.+.++|.+|+++|||+.|+||+|+|+|+
T Consensus 40 ~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 40 FEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 35666677 9999999999753 6899999999999999999999999999999999997
No 127
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.3e-13 Score=117.17 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=59.6
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++. ||..|+|++|+|+||+++...
T Consensus 39 ~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 39 TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp CCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccC
Confidence 6899999999999999999864 3589999999999999999999 999999999999999876554
No 128
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.41 E-value=1.9e-13 Score=122.98 Aligned_cols=66 Identities=17% Similarity=0.388 Sum_probs=60.7
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+|++|++. ++||||||+|.+.++|++|++.|||..|+|++|+|+||+..+.+
T Consensus 59 ~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~~ 130 (135)
T 2lea_A 59 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPP 130 (135)
T ss_dssp CHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCCC
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCCC
Confidence 5799999999999999999864 46899999999999999999999999999999999999876554
No 129
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.40 E-value=1e-13 Score=122.77 Aligned_cols=64 Identities=14% Similarity=0.298 Sum_probs=57.7
Q ss_pred CCHHHHHHHhhhcCceeE--eeec------CCCCeEEEEeCCHHHHHHHHHHhcCC----ccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIER--IKSY------PSRNYSFVEFRSVDEARRAKEGLQGR----LFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~s--Vkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk----~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||+|++ |++. ++||||||+|.+. +|.+|++.|||. .|+|++|+|+||+..+.
T Consensus 35 ~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 35 STMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp CCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred CCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 689999999999999966 7643 5789999999999 999999999999 99999999999986543
No 130
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=114.58 Aligned_cols=66 Identities=18% Similarity=0.302 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhhcCceeEee---ecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIK---SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVk---t~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|+.|+.|.-++ +.++||||||+|.+.++|++|++.|||..|+|++|+|+||+++...
T Consensus 27 ~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 27 TTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp CCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred cCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 68999999999998776664 2356899999999999999999999999999999999999876654
No 131
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.4e-13 Score=116.97 Aligned_cols=61 Identities=18% Similarity=0.308 Sum_probs=56.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
+||++|+++|++||+|++|++. .+||||||+|.+.++|.+|++ |||..|+|+.|+|.+++.
T Consensus 23 ~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 23 ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp CCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 6899999999999999999875 379999999999999999999 999999999999999853
No 132
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.40 E-value=3.5e-13 Score=113.19 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=57.1
Q ss_pred CCHHHHHHHhhhcCceeE-----eeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIER-----IKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~s-----Vkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+++|+.||+|.+ ..+.++||||||+|.+.++|++|++ |||..|+|++|+|++|+++..
T Consensus 29 ~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 29 KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCC
T ss_pred CCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCC
Confidence 689999999999998866 2345789999999999999999999 999999999999999986543
No 133
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.40 E-value=2.6e-13 Score=121.21 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=56.5
Q ss_pred HHHHHHHhhhcCceeEeeecC--CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 3 EQMLHNAMILFGEIERIKSYP--SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~--SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+++|+++|++||+|++|++.+ +||||||+|.+.++|.+|+++|||+.|+||.|+|+|+...
T Consensus 31 ~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~~ 93 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPLP 93 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred HHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcHH
Confidence 579999999999999999764 5899999999999999999999999999999999999643
No 134
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.40 E-value=1.9e-13 Score=126.56 Aligned_cols=63 Identities=19% Similarity=0.309 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhhcC--ceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFG--EIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FG--eI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|+.|| +|.+|++. ++||||||+|.+.++|++|++.|||..|+|++|+|.+|++.
T Consensus 67 ~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~ 137 (156)
T 3n9u_C 67 TTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQ 137 (156)
T ss_dssp CCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHH
T ss_pred CCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCC
Confidence 68999999999999 99999864 46899999999999999999999999999999999999753
No 135
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=1.5e-13 Score=116.22 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=59.1
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|++.++|.+|++. ||..|+|++|+|++|+++...
T Consensus 28 ~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 28 TTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCC
Confidence 6899999999999999999864 3579999999999999999999 999999999999999866543
No 136
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2.9e-13 Score=111.79 Aligned_cols=64 Identities=16% Similarity=0.241 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|+.| +|.+|++. ++||||||+|.+.++|.+|++ |||..|+|++|+|.+|+.+..+
T Consensus 22 ~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~~s 90 (91)
T 2dgw_A 22 VTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGPSS 90 (91)
T ss_dssp CCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCCCC
T ss_pred CCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCCCC
Confidence 6899999999999 99999864 358999999999999999999 9999999999999999877554
No 137
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.39 E-value=1.9e-13 Score=136.78 Aligned_cols=65 Identities=23% Similarity=0.417 Sum_probs=58.8
Q ss_pred CHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCcc------------CCCcEEEEeccCCCCC
Q 004899 2 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLF------------NDPRITIMFSSSELAP 66 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f------------~GRrIrVefAk~~~~p 66 (724)
+|++|+++|++||+|++|++.++||||||+|.+.++|++|+++|||+.| +|++|+|.||+.+..+
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred cHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCCCH
Confidence 5999999999999999999999999999999999999999999999999 8999999999977654
No 138
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.39 E-value=4.4e-13 Score=123.29 Aligned_cols=66 Identities=12% Similarity=0.265 Sum_probs=60.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++.+ +||||||+|.+.++|.+|++.|||..|+|++|+|+||+....+
T Consensus 137 ~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~~~ 208 (216)
T 2qfj_A 137 LSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMP 208 (216)
T ss_dssp CCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCSST
T ss_pred CCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCCCC
Confidence 58999999999999999998653 4899999999999999999999999999999999999876543
No 139
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.39 E-value=3.7e-13 Score=118.04 Aligned_cols=62 Identities=31% Similarity=0.468 Sum_probs=57.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
+++++|+++|++||+|.+|++. .+||||||+|.+.++|.+|++.|||..|+|++|+|.||++
T Consensus 99 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 99 VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 5899999999999999999864 4589999999999999999999999999999999999974
No 140
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.38 E-value=2.8e-13 Score=127.87 Aligned_cols=63 Identities=32% Similarity=0.491 Sum_probs=58.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|++||+|++|++. .+||||||+|.+.++|.+|+++|||..|+|++|+|+||+++
T Consensus 115 ~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 115 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred cHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 6899999999999999999865 36899999999999999999999999999999999999764
No 141
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=2.7e-13 Score=107.90 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=55.1
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
++|++|+++|++||+|.+|++. ++||||||+|.+.++|++|++.|| ..|+|++|+|++|
T Consensus 12 ~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 12 TTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999864 458999999999999999999999 9999999999997
No 142
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=9.5e-13 Score=110.92 Aligned_cols=64 Identities=19% Similarity=0.306 Sum_probs=57.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++ +|..|+|++|+|+||+.+...
T Consensus 27 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 27 TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCcC
Confidence 6899999999999999999864 357999999999999999999 478999999999999876554
No 143
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.36 E-value=6.3e-13 Score=121.96 Aligned_cols=66 Identities=24% Similarity=0.354 Sum_probs=59.5
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+++++|+++|++||+|.+|++.. +||||||+|.+.++|.+|++.|||..|+|++|+|.||+.....
T Consensus 84 ~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 84 AQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred CCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 68999999999999999998753 4799999999999999999999999999999999999866543
No 144
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.35 E-value=1e-12 Score=127.15 Aligned_cols=62 Identities=27% Similarity=0.441 Sum_probs=58.9
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCC-CeEEEEeCCHHHHHHHHHHhcCCccC-CCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSR-NYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SR-GFAFVeF~s~EdA~kAIEaLNGk~f~-GRrIrVefAk~ 62 (724)
++|++|+++|++||+|++|++.+.| |||||+|.+.++|.+|++.|||..|+ |++|+|+|||+
T Consensus 219 ~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~akk 282 (282)
T 3pgw_A 219 TNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 282 (282)
T ss_pred CCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEecC
Confidence 5899999999999999999988765 99999999999999999999999999 99999999984
No 145
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.35 E-value=8.3e-13 Score=107.36 Aligned_cols=58 Identities=26% Similarity=0.486 Sum_probs=55.7
Q ss_pred CCHHHHHHHhhhc----C-------ceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEe
Q 004899 1 MDEQMLHNAMILF----G-------EIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 59 (724)
Q Consensus 1 VdEedLrelFS~F----G-------eI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVef 59 (724)
++|++|+++|+.| | +|.+|++.+.||||||+|.+.++|.+|+ .|||..|+|++|+|+.
T Consensus 18 ~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 18 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 5899999999999 8 9999999999999999999999999999 9999999999999974
No 146
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.35 E-value=4.4e-13 Score=106.51 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=54.6
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
++|++|+++|++||+|.+|++. ++||||||+|.+.++|.+|++. +|..|+|++|+|.+|
T Consensus 11 ~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 11 TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 5899999999999999999863 4689999999999999999995 999999999999986
No 147
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.35 E-value=8.1e-13 Score=115.96 Aligned_cols=77 Identities=25% Similarity=0.311 Sum_probs=65.5
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCCCCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSY 74 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk~~p~y~ 74 (724)
++|++|+++|+.||+|.+|++.+ +||||||+|.+.++|.+|++.|||..++|++|+|.++++.....+....|+
T Consensus 14 ~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v 93 (167)
T 1fxl_A 14 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYV 93 (167)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCGGGTTCEEEE
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCcccCCCCcEEE
Confidence 68999999999999999998653 459999999999999999999999999999999999987654433444555
Q ss_pred CCC
Q 004899 75 SGT 77 (724)
Q Consensus 75 sG~ 77 (724)
.++
T Consensus 94 ~nl 96 (167)
T 1fxl_A 94 SGL 96 (167)
T ss_dssp ESC
T ss_pred CCC
Confidence 555
No 148
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=116.22 Aligned_cols=62 Identities=19% Similarity=0.228 Sum_probs=55.4
Q ss_pred CCHHH----HHHHhhhc-CceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQM----LHNAMILF-GEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEed----LrelFS~F-GeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+++++ |+++|++| |+|.+|. .|||||+|.+.|+|.+|+++|||..|.||+|+|.||+.++..
T Consensus 21 ~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~ 87 (96)
T 2diu_A 21 KDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNREL 87 (96)
T ss_dssp SCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCC
T ss_pred CCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCcce
Confidence 45666 67999999 5999993 399999999999999999999999999999999999987664
No 149
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2.4e-12 Score=106.94 Aligned_cols=64 Identities=19% Similarity=0.360 Sum_probs=57.8
Q ss_pred CCHHHHHHHhhhcCceeEee-ecC--CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIK-SYP--SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVk-t~~--SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|++||+|++|+ +.. ..|.|||+|.+.++|.+|++.|||..|+|++|+|+||+++.
T Consensus 27 ~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 27 LQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 58999999999999999995 543 44669999999999999999999999999999999998763
No 150
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.34 E-value=8.1e-13 Score=107.97 Aligned_cols=59 Identities=15% Similarity=0.263 Sum_probs=53.8
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
++|++|+++|++||+|++|++. ++||||||+|.+.++|.+|++ ++|..|+|++|+|.+|
T Consensus 23 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 23 TSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 6899999999999999999864 358999999999999999995 5888999999999986
No 151
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.02 E-value=9.1e-14 Score=120.02 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=59.6
Q ss_pred CCHHHHHHHhhhcCceeE--------eeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIER--------IKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~s--------Vkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|.+ |++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||+++...
T Consensus 19 ~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 19 VTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 589999999999999998 6643 46899999999999999999999999999999999999876543
No 152
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.2e-12 Score=109.22 Aligned_cols=64 Identities=13% Similarity=0.221 Sum_probs=56.1
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCC-eEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRN-YSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRG-FAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||+|.+|.+.+..| ||||+|.+.++|.+|++ |||..|+|++|+|++|..+..
T Consensus 20 ~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~ 84 (94)
T 2e5g_A 20 VDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEF 84 (94)
T ss_dssp CCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCC
Confidence 68999999999999999994433222 99999999999999999 999999999999999975543
No 153
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=8.5e-13 Score=118.34 Aligned_cols=60 Identities=25% Similarity=0.373 Sum_probs=55.1
Q ss_pred HHHHHHHhhhcCceeEeeecC----------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 3 EQMLHNAMILFGEIERIKSYP----------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~----------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
|++|+++|++||+|++|++.+ +||||||+|.+.++|.+|+++|||+.|+||.|+|+|+..
T Consensus 39 eedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 39 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred HHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 689999999999999998542 459999999999999999999999999999999999864
No 154
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.33 E-value=1.4e-12 Score=115.44 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=57.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+++++|+++|++||+|++|++. .+||||||+|.+.++|.+|++ |||..|+|++|+|.||+++
T Consensus 99 ~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 99 VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp CCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 5899999999999999999854 468999999999999999998 9999999999999999864
No 155
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.33 E-value=1.1e-12 Score=117.50 Aligned_cols=63 Identities=19% Similarity=0.325 Sum_probs=58.4
Q ss_pred CCHHHHHHHhhhcCceeEee-ecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIK-SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVk-t~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
++|++|+++|++||+|..|. ..++||||||+|.+.++|.+|++.|||..|+|++|+|+||+++
T Consensus 111 ~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 111 ITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 58999999999999999983 3468999999999999999999999999999999999999865
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.33 E-value=1.5e-12 Score=115.08 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=65.8
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCCCCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSY 74 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk~~p~y~ 74 (724)
++|++|+++|+.||+|.+|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|.|+++.....+..-.|+
T Consensus 15 ~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~l~v 94 (168)
T 1b7f_A 15 MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYV 94 (168)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTCEEEE
T ss_pred CCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCCCEEE
Confidence 6899999999999999999854 2579999999999999999999999999999999999987655434444555
Q ss_pred CCC
Q 004899 75 SGT 77 (724)
Q Consensus 75 sG~ 77 (724)
.++
T Consensus 95 ~nl 97 (168)
T 1b7f_A 95 TNL 97 (168)
T ss_dssp ESC
T ss_pred eCC
Confidence 554
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.33 E-value=9.4e-13 Score=117.09 Aligned_cols=61 Identities=20% Similarity=0.469 Sum_probs=56.8
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
++|++|+++|++||+|++|++.+ +||||||+|.+.++|.+|++.|||..|+|++|+|+||.
T Consensus 106 ~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 106 LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 58999999999999999998643 47999999999999999999999999999999999984
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.33 E-value=1.1e-12 Score=119.14 Aligned_cols=65 Identities=18% Similarity=0.423 Sum_probs=59.8
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+++++|+++|++||+|++|++.. +||||||+|.+.++|.+|++.|||..|+|++|+|+||+++..
T Consensus 126 ~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 126 LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp CCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 58999999999999999998653 389999999999999999999999999999999999987654
No 159
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.33 E-value=6.7e-13 Score=129.53 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=58.4
Q ss_pred CCHHHHHHHhhhcC--ceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFG--EIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FG--eI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
|||++|+++|++|| +|++|++. ++||||||+|.+.++|++||+.|||..|+|++|+|.||++.
T Consensus 80 ~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~ 150 (229)
T 3q2s_C 80 TTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQ 150 (229)
T ss_dssp CCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHH
T ss_pred CCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCC
Confidence 68999999999999 99999864 46899999999999999999999999999999999999653
No 160
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.7e-12 Score=110.81 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=56.9
Q ss_pred CCHHHHHHHhhhcCceeE-eee-----cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIER-IKS-----YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~s-Vkt-----~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|+.||.|.+ |++ .++||||||+|++.++|++|++. ||..|+||.|+|.+++.+.
T Consensus 27 ~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 27 CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp CCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred CCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 689999999999999987 764 35789999999999999999998 9999999999999997543
No 161
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=4.2e-13 Score=117.64 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=55.9
Q ss_pred CCHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|+.||.|.++.+ .++||||||+|.+.++|++|++ |||..|+|+.|+|.+|+.+
T Consensus 37 ~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 37 AENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp CCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHH
T ss_pred CCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHH
Confidence 689999999999999987432 2468999999999999999999 9999999999999999754
No 162
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.32 E-value=2.2e-12 Score=121.52 Aligned_cols=64 Identities=16% Similarity=0.256 Sum_probs=59.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|+.||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|+||....
T Consensus 100 ~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 100 VSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp CCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 6899999999999999999874 468999999999999999999999999999999999997653
No 163
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.32 E-value=1.8e-12 Score=118.93 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=59.5
Q ss_pred CCHHHHHHHhhhcC-ceeEeeecC-CCCeEEEEeCCHHHHHHHHHHhcCCccC-CCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFG-EIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FG-eI~sVkt~~-SRGFAFVeF~s~EdA~kAIEaLNGk~f~-GRrIrVefAk~~ 63 (724)
++|++|+++|++|| +|++|++.+ .||||||+|.+.++|.+|++.|||+.|+ |++|+|.||++.
T Consensus 132 ~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 132 VSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 58999999999999 999999854 8999999999999999999999999999 999999999864
No 164
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.32 E-value=3.5e-12 Score=111.83 Aligned_cols=65 Identities=25% Similarity=0.398 Sum_probs=59.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||+|.+|++. +++|||||+|.+.++|.+|++.|||..+.|++|+|.++.....
T Consensus 12 ~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 12 ITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred CCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 6899999999999999999864 4679999999999999999999999999999999999976544
No 165
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=2.6e-12 Score=113.91 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=55.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccC---CCcEEEEecc
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFN---DPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~---GRrIrVefAk 61 (724)
+||++|+++|++||+|++|++.+ +||||||+|.+.++|.+|++.|||..+. |++|+|.||.
T Consensus 107 ~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 107 CTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred CCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 58999999999999999998653 4899999999999999999999998876 4999999984
No 166
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.31 E-value=3.5e-12 Score=121.62 Aligned_cols=63 Identities=22% Similarity=0.331 Sum_probs=59.6
Q ss_pred CCHHHHHHHhhhcC-ceeEeeecC-CCCeEEEEeCCHHHHHHHHHHhcCCccC-CCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFG-EIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FG-eI~sVkt~~-SRGFAFVeF~s~EdA~kAIEaLNGk~f~-GRrIrVefAk~~ 63 (724)
++|++|+++|++|| +|++|++.+ .||||||+|.+.++|.+|++.|||+.|+ |++|+|.||++.
T Consensus 163 ~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 163 VSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 58999999999999 999999854 8999999999999999999999999999 999999999864
No 167
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.2e-12 Score=113.56 Aligned_cols=63 Identities=11% Similarity=0.122 Sum_probs=57.6
Q ss_pred CCHHHHHHHhhhcCce-eEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEI-ERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI-~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
+||++|+++|+.||.| .+|++. ++||||||+|.+.++|.+|++. ||..|+|++|+|.+|+.+.
T Consensus 27 ~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 27 ITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp SCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred CCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 6899999999999999 888864 4799999999999999999998 9999999999999997653
No 168
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.29 E-value=1.1e-12 Score=115.03 Aligned_cols=62 Identities=15% Similarity=0.119 Sum_probs=56.8
Q ss_pred CCHHHHHHHhhhcCc---eeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGE---IERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGe---I~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|+.||. |++|++. ++||||||+|++.++|++|++ |||..|+||.|+|.+|+.+
T Consensus 29 ~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 98 (118)
T 2db1_A 29 CSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRT 98 (118)
T ss_dssp CCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHH
T ss_pred CCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHH
Confidence 689999999999999 8888854 468999999999999999999 9999999999999999654
No 169
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.29 E-value=3.6e-12 Score=107.02 Aligned_cols=60 Identities=22% Similarity=0.305 Sum_probs=51.2
Q ss_pred CCHHHHHHHhhhcCceeEeeec-CCCCeEEEEeCCHHHHHHHHHHhcCCccC--CCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-PSRNYSFVEFRSVDEARRAKEGLQGRLFN--DPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-~SRGFAFVeF~s~EdA~kAIEaLNGk~f~--GRrIrVefAk~~~ 64 (724)
+||++|+++|++||+|++|++. .+||||||+|++.++|+ +|+|..+. |++|+|.+|+++.
T Consensus 23 ~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 23 MTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp CCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC---
T ss_pred CCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcCCCC
Confidence 6899999999999999999976 47999999999999998 47888764 9999999998654
No 170
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.29 E-value=4e-12 Score=112.31 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=55.7
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCC--CcEEEEec
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~G--RrIrVefA 60 (724)
++|++|+++|++||+|++|++.+ +||||||+|.+.++|.+|++.|||+.|+| ++|+|.||
T Consensus 101 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 101 ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 58999999999999999998653 46999999999999999999999999988 99999997
No 171
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.29 E-value=4.3e-12 Score=111.34 Aligned_cols=60 Identities=28% Similarity=0.420 Sum_probs=55.1
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCc--EEEEec
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPR--ITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRr--IrVefA 60 (724)
+++++|+++|++||+|++|++.. +||||||+|.+.++|.+|++.|||+.|+|+. |+|.||
T Consensus 100 ~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 100 MTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 58999999999999999998642 4799999999999999999999999999975 999987
No 172
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.28 E-value=5.7e-12 Score=121.92 Aligned_cols=65 Identities=26% Similarity=0.394 Sum_probs=59.2
Q ss_pred CCHHHHH----HHhhhcCceeEeeec---CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLH----NAMILFGEIERIKSY---PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLr----elFS~FGeI~sVkt~---~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+ ++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..|.|++|+|+||+.+..
T Consensus 21 ~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 21 IKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 92 (282)
T ss_pred CCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcc
Confidence 5889966 999999999999954 5899999999999999999999999999999999999976543
No 173
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.27 E-value=1.9e-12 Score=111.15 Aligned_cols=62 Identities=13% Similarity=0.083 Sum_probs=56.9
Q ss_pred CCHHHHHHHhhhcCc---eeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGE---IERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGe---I~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|+.||. |.+|++. ++||||||+|.+.++|++|++ |||..|+||.|+|.+|+.+
T Consensus 23 ~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~ 92 (107)
T 2lmi_A 23 CTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNE 92 (107)
T ss_dssp CCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHH
T ss_pred CCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHH
Confidence 689999999999999 8888864 578999999999999999999 9999999999999999754
No 174
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2.2e-12 Score=110.99 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=55.8
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||.| +|++. ++||||||+|++.++|++|+ +|||..|+||.|+|..+.....
T Consensus 27 ~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 27 ATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNSTAGT 94 (102)
T ss_dssp CCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECCCCC
T ss_pred CCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCCCCC
Confidence 6899999999999954 88754 46899999999999999999 5899999999999999976544
No 175
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.27 E-value=7.9e-12 Score=114.93 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=58.0
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
+||++|+++|+.||+|++|++. ++||||||+|.+.++|.+|++.|||..|+|++|+|.++....
T Consensus 40 ~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 40 LGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp CCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred CCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 6899999999999999999864 368999999999999999999999999999999999986543
No 176
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.27 E-value=6e-12 Score=111.90 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=66.0
Q ss_pred CCHHHHHHHhhhc----C-------ceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCCC
Q 004899 1 MDEQMLHNAMILF----G-------EIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKD 69 (724)
Q Consensus 1 VdEedLrelFS~F----G-------eI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk~ 69 (724)
+||++|+++|++| | .|.++++.++||||||+|.+.++|.+|+ .|||..|+|++|+|.+++........
T Consensus 16 ~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~~~~ 94 (172)
T 2g4b_A 16 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGA 94 (172)
T ss_dssp CCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCCTTT
T ss_pred cCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCcccCCCCCC
Confidence 6899999999999 7 8889999999999999999999999999 99999999999999999866554334
Q ss_pred CCCCCCCC
Q 004899 70 YPGSYSGT 77 (724)
Q Consensus 70 ~p~y~sG~ 77 (724)
...|+.++
T Consensus 95 ~~l~v~nl 102 (172)
T 2g4b_A 95 HKLFIGGL 102 (172)
T ss_dssp TCEEEECC
T ss_pred CEEEEEcC
Confidence 44566555
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.26 E-value=7.9e-12 Score=119.17 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhcCceeEeeecCC-CCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPS-RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~S-RGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|++||+|++|++.+. ||||||+|.+.++|++|++.|||..|+|++|+|+||+...
T Consensus 47 ~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~ 111 (229)
T 2adc_A 47 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 111 (229)
T ss_dssp CCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCC
T ss_pred CCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCcc
Confidence 689999999999999999998754 6999999999999999999999999999999999998653
No 178
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=6.2e-12 Score=131.53 Aligned_cols=62 Identities=21% Similarity=0.393 Sum_probs=57.1
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCcc---CCC--cEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLF---NDP--RITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f---~GR--rIrVefAk~ 62 (724)
+||++|+++|++||+|++|++.++||||||+|++.+||++||++|||+++ .|+ .|.|+|+.+
T Consensus 32 ~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~ 98 (345)
T 3tht_A 32 VSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 98 (345)
T ss_dssp CCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSS
T ss_pred CCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeec
Confidence 69999999999999999999989999999999999999999999999998 355 688899853
No 179
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.25 E-value=6e-12 Score=115.54 Aligned_cols=64 Identities=20% Similarity=0.326 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhcCceeEeeecCC-CCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPS-RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~S-RGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|++||+|.+|++.+. ||||||+|.+.++|.+|++.|||..|+|++|+|.||+...
T Consensus 16 ~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 16 VTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 589999999999999999997654 7999999999999999999999999999999999998654
No 180
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.24 E-value=2.9e-12 Score=117.19 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=56.7
Q ss_pred CCHHHHHHHhhhcCc---eeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGE---IERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGe---I~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|+.||+ |++|++. ++||||||+|++.++|++|++ |||+.|+||.|+|.+|+.+
T Consensus 56 ~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~ 125 (136)
T 2hgl_A 56 CSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRT 125 (136)
T ss_dssp CCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHH
T ss_pred CCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChH
Confidence 689999999999999 8888754 568999999999999999999 9999999999999998643
No 181
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.24 E-value=1.9e-12 Score=108.84 Aligned_cols=62 Identities=19% Similarity=0.353 Sum_probs=56.9
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|+.||+|++|++.. +||||||+|.+.++|++|++ ||..|+|++|+|.+|....
T Consensus 21 ~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 21 MDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC
T ss_pred CCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCc
Confidence 68999999999999999998653 68999999999999999999 9999999999999997543
No 182
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.24 E-value=2.9e-12 Score=117.74 Aligned_cols=63 Identities=19% Similarity=0.116 Sum_probs=57.3
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++|| |++|++. ++||||||+|++.++|++|+ +|||..|+||.|+|..++....
T Consensus 58 ~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 58 ATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred CCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 68999999999999 7788864 57999999999999999999 8999999999999999986544
No 183
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.24 E-value=9.7e-12 Score=120.98 Aligned_cols=63 Identities=21% Similarity=0.361 Sum_probs=60.8
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|++||+|.+|++.++||||||+|.+.++|.+|++.|||..|.|++|+|.|++..
T Consensus 34 ~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 34 ITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 689999999999999999999999999999999999999999999999999999999999754
No 184
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.23 E-value=8.9e-12 Score=117.60 Aligned_cols=64 Identities=25% Similarity=0.382 Sum_probs=59.2
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
+||++|+++|++||+|++|++. ++||||||+|.+.++|.+|++.|||..+.|+.|+|.++....
T Consensus 27 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 27 VTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred CCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 6899999999999999999864 468999999999999999999999999999999999997654
No 185
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.22 E-value=1.7e-11 Score=130.39 Aligned_cols=65 Identities=20% Similarity=0.408 Sum_probs=60.1
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
|||++|+++|++||+|++|+++ .++|||||+|.+.++|.+||++|||..|+|+.|+|+||+....
T Consensus 114 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~~ 184 (437)
T 3pgw_S 114 TTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRTV 184 (437)
T ss_pred CCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCCC
Confidence 6899999999999999999865 3689999999999999999999999999999999999986544
No 186
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=108.83 Aligned_cols=61 Identities=10% Similarity=0.096 Sum_probs=56.0
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|+.| .|++|++. ++||||||+|.+.++|++|+ .|||..|+||.|+|..|+.+
T Consensus 28 ~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 28 AMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp CCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred CCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 6899999999999 89999864 47899999999999999999 79999999999999988654
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.22 E-value=1e-11 Score=120.72 Aligned_cols=62 Identities=26% Similarity=0.456 Sum_probs=57.5
Q ss_pred CCHHHHHHHhhhcCceeEeee-------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKS-------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt-------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+|+++|+++|++||+|++|++ ..+||||||+|.+.++|.+|+ .|||+.|+|++|+|.||+++
T Consensus 223 ~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 223 LDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp CCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred CCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 589999999999999999986 446899999999999999999 99999999999999999865
No 188
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.21 E-value=1e-11 Score=112.59 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=55.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+||++|+++|++||+|++|++. .+||||||+|.+.++|.+|++. +|..|+|+.|+|.||.++...
T Consensus 116 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 116 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC-----
T ss_pred CCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHh
Confidence 5899999999999999999865 3589999999999999999987 899999999999999876543
No 189
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=3.1e-11 Score=104.62 Aligned_cols=58 Identities=16% Similarity=0.311 Sum_probs=50.0
Q ss_pred CCHHHHHHHhhhcCceeEeee---------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004899 1 MDEQMLHNAMILFGEIERIKS---------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt---------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
++|++|+++|++||+|. +.+ .++||||||+|.+.++|++|+++|++ ++|+.|.+..+.
T Consensus 20 ~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~~~~~ 86 (114)
T 2dnl_A 20 IDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLCVSSP 86 (114)
T ss_dssp CCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEEECCS
T ss_pred CCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEeccCC
Confidence 68999999999999999 653 25699999999999999999999964 778888877654
No 190
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.20 E-value=2e-11 Score=108.21 Aligned_cols=77 Identities=19% Similarity=0.178 Sum_probs=63.0
Q ss_pred CCHHHHHHHhhhcCceeEeeec--------CCCCeEEEEeCCHHHHHHHHHHhcCCccC---CCcEEEEeccCCCCCC-C
Q 004899 1 MDEQMLHNAMILFGEIERIKSY--------PSRNYSFVEFRSVDEARRAKEGLQGRLFN---DPRITIMFSSSELAPG-K 68 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~--------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~---GRrIrVefAk~~~~pg-k 68 (724)
+||++|+++|++||+|.+|++. ++||||||+|.+.++|.+|++.|||..+. ++.|+|.+++...... .
T Consensus 15 ~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (175)
T 3nmr_A 15 WSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNNAVE 94 (175)
T ss_dssp CCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCSCGG
T ss_pred CCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEccccccccccCC
Confidence 6899999999999999999864 46899999999999999999999999886 6889999987665432 1
Q ss_pred CCCCCCCCC
Q 004899 69 DYPGSYSGT 77 (724)
Q Consensus 69 ~~p~y~sG~ 77 (724)
....|+.++
T Consensus 95 ~~~l~v~nl 103 (175)
T 3nmr_A 95 DRKLFIGMI 103 (175)
T ss_dssp GSEEEEESC
T ss_pred CCeEEEcCC
Confidence 333455554
No 191
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=8.7e-12 Score=102.59 Aligned_cols=62 Identities=21% Similarity=0.313 Sum_probs=53.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec-CCCCeEEEEeCCHHHHHHHHHHhcCCcc--CCCcEEEEeccCCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-PSRNYSFVEFRSVDEARRAKEGLQGRLF--NDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-~SRGFAFVeF~s~EdA~kAIEaLNGk~f--~GRrIrVefAk~~~~p 66 (724)
++|++|+++|++||+|++|++. .+||||||+|.+.++|++ |+|..+ +|++|+|.+|+++...
T Consensus 17 ~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 17 MTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQS----LCGEDLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp SCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHH----TTTCEEEETTEEEEEECCCCCCCC
T ss_pred CCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHH----HhcCCceeCCEEEEEEecCCCCCC
Confidence 6899999999999999999975 479999999999999974 566655 8999999999866543
No 192
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.19 E-value=1.7e-11 Score=111.30 Aligned_cols=63 Identities=24% Similarity=0.429 Sum_probs=58.6
Q ss_pred CCHHHHHHHhhhc----C-------ceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILF----G-------EIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~F----G-------eI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
+||++|+++|+.| | .|.++++.++||||||+|.+.++|++|+ .|||..|+|++|+|.+++...
T Consensus 16 ~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~ 89 (198)
T 2yh0_A 16 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQ 89 (198)
T ss_dssp CCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCCC
T ss_pred CCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCC
Confidence 6899999999999 6 7888888899999999999999999999 899999999999999997653
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.19 E-value=1.4e-11 Score=119.29 Aligned_cols=63 Identities=13% Similarity=0.202 Sum_probs=58.7
Q ss_pred CHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 2 DEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
||++|+++|++||.|++|++.+ ++|||||+|.+.++|.+|++.|||..|+|++|+|.||++..
T Consensus 198 ~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 198 DVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp CHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred CHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 8999999999999999998653 58999999999999999999999999999999999998654
No 194
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.16 E-value=2.8e-11 Score=109.71 Aligned_cols=64 Identities=16% Similarity=0.240 Sum_probs=56.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||+|.+|++. ++||||||+|.+.++|.+|++. +|..|+|+.|+|.++.....
T Consensus 25 ~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~ 94 (196)
T 1l3k_A 25 TTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSRED 94 (196)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC---
T ss_pred CCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCccc
Confidence 6899999999999999999864 3589999999999999999977 99999999999999976543
No 195
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.16 E-value=3.3e-11 Score=114.41 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=56.1
Q ss_pred HHHHHHHhhhcCceeEeeec----------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 3 EQMLHNAMILFGEIERIKSY----------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~----------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
+++|++.|++||+|++|++. ++|||+||+|.+.++|.+|+++|||+.|+||.|+|+|+..
T Consensus 143 ~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~ 212 (222)
T 3dxb_A 143 EGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 212 (222)
T ss_dssp HHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCH
T ss_pred HHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCH
Confidence 67999999999999999864 5789999999999999999999999999999999999854
No 196
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.13 E-value=6.5e-11 Score=114.65 Aligned_cols=62 Identities=10% Similarity=0.220 Sum_probs=58.9
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|+.|| |.+|++.++||||||+|.+.++|.+|++.|||..|.|++|+|+++...
T Consensus 34 ~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 95 (284)
T 3smz_A 34 VTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD 95 (284)
T ss_dssp CCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCC
Confidence 68999999999999 999999999999999999999999999999999999999999997543
No 197
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.10 E-value=7.4e-11 Score=105.74 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=56.5
Q ss_pred CCHHHHHHHhhhcCceeE-----eeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFGEIER-----IKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~s-----Vkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|+.||.|.. +++.++||||||+|.+.++|.+|+ +|||..|.|++|+|.+++....
T Consensus 25 ~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~~ 93 (175)
T 1fje_B 25 KSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRDS 93 (175)
T ss_dssp SCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSSC
T ss_pred CCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCccc
Confidence 589999999999997654 446679999999999999999999 5999999999999999986543
No 198
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.09 E-value=2.7e-11 Score=109.10 Aligned_cols=62 Identities=18% Similarity=0.118 Sum_probs=55.0
Q ss_pred CCHHHHHHHhhhcCce----eEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 1 MDEQMLHNAMILFGEI----ERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI----~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|++||+| ++|++. ++||||||+|.+.++|++|++. ||+.|+||.|+|..|+.+
T Consensus 35 ~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~ 105 (123)
T 2dha_A 35 ATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAA 105 (123)
T ss_dssp CCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHH
T ss_pred CCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHH
Confidence 6899999999999986 577653 5689999999999999999997 999999999999998643
No 199
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.08 E-value=4.9e-11 Score=108.31 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=53.5
Q ss_pred CCHHHHHHHhhhcCcee--Eeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIE--RIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~--sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
+||++|+++|+.| .|. +|++. ++||||||+|++.++|++|++. +|..|+||.|+|..|..
T Consensus 54 ~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 54 CTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp CCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECH
T ss_pred CCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCH
Confidence 6899999999999 566 88754 5799999999999999999985 88999999999999864
No 200
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.07 E-value=3.9e-11 Score=112.39 Aligned_cols=62 Identities=13% Similarity=0.322 Sum_probs=53.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCC----HHH----HHHHHH--HhcCCccCCCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRS----VDE----ARRAKE--GLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s----~Ed----A~kAIE--aLNGk~f~GRrIrVefAk~ 62 (724)
++|++|+++|+.||+|.+|+++ .+||||||+|.+ .++ |.+|++ +|||..|+|++|+|++=+.
T Consensus 18 tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 18 IQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp CCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred CCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 6899999999999999999843 689999999996 433 899999 8999999999999998653
No 201
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.07 E-value=1.5e-10 Score=112.61 Aligned_cols=65 Identities=15% Similarity=0.208 Sum_probs=58.0
Q ss_pred CCHHHHHHHhhhcC-ceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004899 1 MDEQMLHNAMILFG-EIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FG-eI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+++++|+++|+.|| +|.+|++. .+||||||+|.+.++|.+|++.|||..|+|++|+|.||.+...
T Consensus 129 ~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 199 (292)
T 2ghp_A 129 YTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEK 199 (292)
T ss_dssp CCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC--
T ss_pred CCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcc
Confidence 58999999999999 99999865 3789999999999999999999999999999999999986544
No 202
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.06 E-value=8.8e-11 Score=111.74 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=55.1
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
+++++|+++|++||+|.+|++. .+||||||+|++.++|.+|++.++ ..|+|++|+|.+++.
T Consensus 121 ~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 121 ATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp CCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred CCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 5899999999999999999864 368999999999999999998775 499999999999864
No 203
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.05 E-value=1.7e-10 Score=110.24 Aligned_cols=60 Identities=15% Similarity=0.209 Sum_probs=53.4
Q ss_pred CCHHHHHHHhhhcCce--eEeeecC----CCCeEEEEeCCHHHHHHHHHHhcCCccCCC----cEEEEec
Q 004899 1 MDEQMLHNAMILFGEI--ERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDP----RITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI--~sVkt~~----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GR----rIrVefA 60 (724)
+||++|+++|++||.| ++|++++ .+|||||+|.+.++|.+|++.|||..|+|+ ++.|.||
T Consensus 135 ~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 135 VTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 6899999999999999 8998764 358999999999999999999999999998 4666665
No 204
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.05 E-value=1.5e-10 Score=102.43 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=55.5
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
+||++|+++|++||+|.+|++. ++||||||+|.+.++|.+|++. +..++|+.|+|.++....
T Consensus 15 ~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 15 TTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp CCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHH
T ss_pred CCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchh
Confidence 6899999999999999999864 4689999999999999999995 679999999999987543
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=5.2e-10 Score=98.60 Aligned_cols=57 Identities=25% Similarity=0.316 Sum_probs=52.9
Q ss_pred HHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004899 4 QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 4 edLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
.+|.++|+.||+|..|++...| +||+|++.++|.+|++ |||..++||+|+|++++++
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred HHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 5799999999999999998654 8999999999999999 9999999999999999865
No 206
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.95 E-value=6.4e-10 Score=108.22 Aligned_cols=64 Identities=22% Similarity=0.283 Sum_probs=56.2
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhc-CCccC---CCcEEEEeccCCC
Q 004899 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQ-GRLFN---DPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLN-Gk~f~---GRrIrVefAk~~~ 64 (724)
+|+++|+++|+.||+|++|++. ++||||||+|.+.++|.+|++.|| |..+. |++|+|.++....
T Consensus 108 ~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 108 VSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp CCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 6899999999999999999864 458999999999999999999995 55555 9999999997653
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=8.8e-09 Score=91.57 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=51.0
Q ss_pred HHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004899 4 QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 4 edLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
.+|.+.|+.||+|..|++...| +||+|.+.++|.+||+ |||..++||.|+|.+-.
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred HHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 4689999999999999998777 9999999999999999 99999999999998754
No 208
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=2.1e-07 Score=85.12 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=56.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCC-HHHHHHHHHHhc--CCccCCCcEEEEecc
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRS-VDEARRAKEGLQ--GRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s-~EdA~kAIEaLN--Gk~f~GRrIrVefAk 61 (724)
+++++|+++|+.||+|..|.+.+.+-.|||+|.+ .++|.+|+++|| |..|+|..++++...
T Consensus 31 ~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 31 TCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp CCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECC
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECC
Confidence 5789999999999999999999888899999999 899999999994 888999999997754
No 209
>1ow1_A Smart/HDAC1 associated repressor protein; beta-alpha-barrel, SPOC domain,, transcription; 1.80A {Homo sapiens} SCOP: b.131.1.3
Probab=97.73 E-value=3.4e-05 Score=76.19 Aligned_cols=110 Identities=24% Similarity=0.457 Sum_probs=79.2
Q ss_pred ceeeeeec-cCCcceeeeEeeeccccccc-cCC-----ceeecccccch-----hHHHHHhhhccCceEEEEeCCCch--
Q 004899 277 FIWRGIIA-KGGTPVCRARCVPFGKGIES-ELP-----EVVNCSARTGL-----DMLAKHYAEAIGFDIVFFLPDSED-- 342 (724)
Q Consensus 277 ~~W~G~iA-KgG~pvC~arC~~~gk~~~~-~~P-----~~ldctaRT~l-----d~l~khy~~a~~~~vvff~P~s~~-- 342 (724)
..|+|.|+ |.=.-.+++.|+-....+.- -+| ..|-+|-|--| |-|.+.-....++-++.-|||+.+
T Consensus 38 ~~WqG~L~LKn~~f~v~mh~v~Gn~~l~~~~L~~~~~~~~LRItQRmRLd~~qLe~V~rRi~~~~~~cilLAlp~~~~~~ 117 (195)
T 1ow1_A 38 IVWQGLLALKNDTAAVQLHFVSGNNVLAHRSLPLSEGGPPLRIAQRMRLEATQLEGVARRMTVETDYCLLLALPCGRDQE 117 (195)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEECHHHHHHHSCCC---CCEEECEEEECSHHHHHHHHHHTSSTTTEEEEEEEECCSSHH
T ss_pred hhceeeeeeecchhhhEEEEEeCcHHHHHHhCCCCCCCCceeeehhhccChHHHHHHHHHHhCCCCceEEEEecCCCCch
Confidence 78999986 66666677777766422211 122 34567777655 455666656677778888898843
Q ss_pred hh-----hhHHHHHHhhccccccceEeecC------CcEEEEeCCChhhhcceee
Q 004899 343 DF-----ASYTEFLRYLGSKNRAGVAKFDD------GTTLFLVPPSDFLSKVLKV 386 (724)
Q Consensus 343 D~-----~~y~eFl~YL~~K~rAgV~K~~~------~ttLFLVPPSdf~~~vLkV 386 (724)
|. .-.+.|++||.+|+.||||-+.. .-+|++.||.+|+.+.|+=
T Consensus 118 d~~~q~~~L~~~fV~YL~qKqAAGIisl~~~~s~~~~~vlhiFPPCeFs~~~L~~ 172 (195)
T 1ow1_A 118 DVVSQTESLKAAFITYLQAKQAAGIINVPNPGSNQPAYVLQIFPPCEFSESHLSR 172 (195)
T ss_dssp HHHHHHHHHHHHTHHHHHHHTEEEEEEECCTTCCSCCEEEEEECSSHHHHHHHHH
T ss_pred hhHhhhhHHHHHHHHHHHhCccceEEecCCCCCCCcceEEEEcCCcHHHHHHHHH
Confidence 22 33567999999999999999985 4789999999999988765
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.64 E-value=7.5e-05 Score=68.71 Aligned_cols=59 Identities=17% Similarity=0.116 Sum_probs=56.0
Q ss_pred CCHHHHHHHhhhc-----CceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEe
Q 004899 1 MDEQMLHNAMILF-----GEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 59 (724)
Q Consensus 1 VdEedLrelFS~F-----GeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVef 59 (724)
|+++-++.+..+| |.|++|.+.+.-|=|+|+|+|+..|-+|.-+|||.+|+||+|+|.=
T Consensus 33 vndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 33 VSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp CCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 5788999999999 9999999999999999999999999999999999999999999853
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.16 E-value=0.00036 Score=63.11 Aligned_cols=59 Identities=12% Similarity=0.163 Sum_probs=53.8
Q ss_pred HHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004899 4 QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 4 edLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
+.++++|..|+++......++=.=.-|.|.+.++|.+|...|||..|+|++|+|-||..
T Consensus 25 ~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 25 AKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp HHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred HHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 57899999999999988777655668999999999999999999999999999999983
No 212
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.28 E-value=0.0011 Score=59.34 Aligned_cols=40 Identities=8% Similarity=-0.045 Sum_probs=37.3
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHh-cCCccCCCcEEEEeccCC
Q 004899 23 PSRNYSFVEFRSVDEARRAKEGL-QGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 23 ~SRGFAFVeF~s~EdA~kAIEaL-NGk~f~GRrIrVefAk~~ 63 (724)
+-+|+++|+|.+.++|++|+++| ||..++| .|+|++++..
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 56899999999999999999999 9999999 9999998754
No 213
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.42 E-value=0.0066 Score=54.31 Aligned_cols=37 Identities=11% Similarity=-0.130 Sum_probs=30.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEe
Q 004899 23 PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 59 (724)
Q Consensus 23 ~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVef 59 (724)
+++|||||+|.+.++|++|++.+++....+..+.+..
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~ 47 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDD 47 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEET
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccC
Confidence 6899999999999999999999998665555555443
No 214
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.36 E-value=0.024 Score=52.27 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=46.3
Q ss_pred HHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCC-CcEEEEe
Q 004899 4 QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFND-PRITIMF 59 (724)
Q Consensus 4 edLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~G-RrIrVef 59 (724)
..+-+.|++||+|.+.......++-.|.|.+..+|++|+.. ||+.|+| -.|-|..
T Consensus 38 ~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 38 SYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKP 93 (119)
T ss_dssp HHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEE
T ss_pred HHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEE
Confidence 45678999999999998755678999999999999999987 9999986 4455544
No 215
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.72 E-value=0.04 Score=60.33 Aligned_cols=44 Identities=25% Similarity=0.370 Sum_probs=34.3
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCC-eEEEEeCCHHHHHHHHHH
Q 004899 1 MDEQMLHNAMILFGEIERIKSYPSRN-YSFVEFRSVDEARRAKEG 44 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRG-FAFVeF~s~EdA~kAIEa 44 (724)
++|.+|.+.|+.||.|.++...+.+| ||.|+|.+.+++..+++.
T Consensus 64 ~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 64 ISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp ---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred CCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 47899999999999999999998888 999999999988866544
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=89.34 E-value=0.3 Score=45.87 Aligned_cols=57 Identities=14% Similarity=0.197 Sum_probs=45.2
Q ss_pred HHHHHHhhhcCceeE-eee----------------c---CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004899 4 QMLHNAMILFGEIER-IKS----------------Y---PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 4 edLrelFS~FGeI~s-Vkt----------------~---~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
..+-+.|++||.|.+ +.. + ...++-.|+|.+..+|.+|+. .||+.|+|.-|-|..-+
T Consensus 21 ~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 21 NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVFNGVLLGVIPYT 97 (132)
T ss_dssp HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEETTEECEEEECC
T ss_pred HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEeCcEEEEEEECC
Confidence 456689999999976 211 1 146788999999999999996 59999999888887654
No 217
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.36 E-value=3.7 Score=37.28 Aligned_cols=64 Identities=13% Similarity=0.184 Sum_probs=49.3
Q ss_pred CCHHHHHHHhhhc-----CceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCC
Q 004899 1 MDEQMLHNAMILF-----GEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGK 68 (724)
Q Consensus 1 VdEedLrelFS~F-----GeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk 68 (724)
++++.|+-.|+.= |+|++|+..+ +=|+|+|.+.+.|++.++.- -..|+|-+|.| +....+.+.|
T Consensus 20 ~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k~-~H~L~~~~LsV-~P~~~~~~~r 88 (104)
T 2dhx_A 20 VPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQA-DHELHGAQLSL-RPAPPRAPAR 88 (104)
T ss_dssp SCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTCS-CCBSSSSBCEE-EECCCCCCCC
T ss_pred CChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcCC-cceecCeEEEE-EcCCCCCcce
Confidence 4688899999882 8999999876 78999999999998877651 23677789998 4444555545
No 218
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=83.05 E-value=2.7 Score=36.89 Aligned_cols=62 Identities=11% Similarity=0.310 Sum_probs=48.1
Q ss_pred CCHHHHHHHhhhcCceeEeeecC--------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCc-----EEEEeccC
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP--------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPR-----ITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~--------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRr-----IrVefAk~ 62 (724)
+||+++.+.+++..++.-..-.+ .-.-|+|.|.+.|++.+-.+.++|..|.+.+ -.|+||--
T Consensus 13 LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP~ 87 (91)
T 1uw4_A 13 LTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAPF 87 (91)
T ss_dssp CCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECSS
T ss_pred CCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcCC
Confidence 58999999999999876554221 1246999999999999999999999995542 35777743
No 219
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=76.68 E-value=4 Score=36.95 Aligned_cols=43 Identities=19% Similarity=0.250 Sum_probs=33.6
Q ss_pred CHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhc
Q 004899 2 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQ 46 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLN 46 (724)
.-.||.++|++||-|. |+=. .-.-|||.|.+.+.|..|+..++
T Consensus 28 Kt~DI~~lFs~fggv~-I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 28 KTSDLYQLFSAFGNIQ-ISWI-DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CHHHHHHHHTTTCSCC-CEEE-ETTEEEEECSCHHHHHHHHHHHH
T ss_pred hhHHHHHHhhccCCEE-EEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 3579999999999543 3311 24579999999999999999875
No 220
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=68.67 E-value=2.4 Score=38.36 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=33.6
Q ss_pred CHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhc
Q 004899 2 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQ 46 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLN 46 (724)
.-.||.++|++||-| .|+=. .-.-|||.|.+.+.|..|+..+.
T Consensus 18 Kt~Di~~lFs~fggv-~I~Wi-dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 18 KTSDLYQLFSAFGNI-QISWI-DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp CHHHHHHHTTTSEEE-EEEEE-ETTEEEEEEEEECHHHHHHHHHT
T ss_pred hhHHHHHHHhccCCE-EEEEE-cCCeEEEEecCHHHHHHHHHhcc
Confidence 357999999999944 23311 24579999999999999999876
No 221
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=67.17 E-value=5.4 Score=32.33 Aligned_cols=54 Identities=9% Similarity=0.102 Sum_probs=37.0
Q ss_pred HHHHHhhhcCce-----eEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004899 5 MLHNAMILFGEI-----ERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 5 dLrelFS~FGeI-----~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
+|-.++..-+.| -.|+++ ..|.||+-.... |.++++.|++..+.|++++|+.++
T Consensus 17 ~ivg~i~~~~gi~~~~IG~I~i~--d~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 17 DFVGTIAKIDGVSADDIGIITIM--DNASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp HHHHHHHTSTTCCGGGEEEEEEC--SSCEEEEECTTC-HHHHHHHHTTCCC---CCCEEECC
T ss_pred HHHHHHHHccCCChhhccEEEEe--CCcEEEEECHHH-HHHHHHHhccccCcCceEEEEECC
Confidence 344444444444 345554 569999987654 889999999999999999999876
No 222
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=63.53 E-value=6.9 Score=34.98 Aligned_cols=61 Identities=13% Similarity=0.358 Sum_probs=43.5
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-------C-CCeEEEEeCCHHHHHHHHHHhcCCccCCCc-----EEEEecc
Q 004899 1 MDEQMLHNAMILFGEIERIKSYP-------S-RNYSFVEFRSVDEARRAKEGLQGRLFNDPR-----ITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-------S-RGFAFVeF~s~EdA~kAIEaLNGk~f~GRr-----IrVefAk 61 (724)
+||+++.+.+++.=++....-.+ . -.-|+|.|.+.|+...-.+..+|..|.+.+ -.|+||-
T Consensus 21 Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 21 LTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp SCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred CCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 47888887777765543222111 1 146899999999999999999999996543 5577773
No 223
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=38.09 E-value=17 Score=39.23 Aligned_cols=45 Identities=31% Similarity=0.730 Sum_probs=32.6
Q ss_pred ccCceEEEEeCCCchhhhhHHHHHHhhccc--cccceEeecCCcEEEEeCCChhhh
Q 004899 328 AIGFDIVFFLPDSEDDFASYTEFLRYLGSK--NRAGVAKFDDGTTLFLVPPSDFLS 381 (724)
Q Consensus 328 a~~~~vvff~P~s~~D~~~y~eFl~YL~~K--~rAgV~K~~~~ttLFLVPPSdf~~ 381 (724)
.-+-.|..|-| +.++|+-+..||.++..+ .++|+||| |||.++..
T Consensus 31 ~~~~~iPVF~P-T~EEF~Df~~YI~kIe~~gA~~~GI~KI--------IPP~~W~p 77 (381)
T 2ox0_A 31 NPSARIMTFYP-TMEEFRNFSRYIAYIESQGAHRAGLAKV--------VPPKEWKP 77 (381)
T ss_dssp STTCCCEEECC-CHHHHSCHHHHHHHHHHTTGGGGSEEEE--------CCCTTCCS
T ss_pred CCCCCCceEcC-CHHHHhCHHHHHHHHHhccccccCceee--------cCCccCCC
Confidence 34456777777 456777777777777665 59999997 88888753
No 224
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=37.86 E-value=6.6 Score=36.72 Aligned_cols=29 Identities=7% Similarity=0.047 Sum_probs=19.9
Q ss_pred HHHHHHHhhhcCceeEeeecCCCCeEEEEeC
Q 004899 3 EQMLHNAMILFGEIERIKSYPSRNYSFVEFR 33 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~SRGFAFVeF~ 33 (724)
|+|+.++|...|.|+.... .|||+||+-.
T Consensus 1 ~~~~~~l~~~~G~Vkwfn~--~kGfGFI~~~ 29 (148)
T 3ts2_A 1 AADEPQLLHGAGICKWFNV--RMGFGFLSMT 29 (148)
T ss_dssp -----CCEEEEEEEEEEET--TTTEEEEEEE
T ss_pred CCcccccccceeEEEEEEC--CCCeeEEeeC
Confidence 4678888998898876654 5899999976
No 225
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=36.91 E-value=20 Score=38.38 Aligned_cols=48 Identities=27% Similarity=0.754 Sum_probs=34.6
Q ss_pred hccCceEEEEeCCCchhhhhHHHHHHhhccc--cccceEeecCCcEEEEeCCChhhhcc
Q 004899 327 EAIGFDIVFFLPDSEDDFASYTEFLRYLGSK--NRAGVAKFDDGTTLFLVPPSDFLSKV 383 (724)
Q Consensus 327 ~a~~~~vvff~P~s~~D~~~y~eFl~YL~~K--~rAgV~K~~~~ttLFLVPPSdf~~~v 383 (724)
+.....|-.|-|- .++|+.|..||.|+.++ .++|+||| |||.++....
T Consensus 12 ~~~~~~ipvF~PT-~eEF~df~~Yi~~ie~~Ga~~~Gi~KI--------IPP~~W~~r~ 61 (354)
T 3dxt_A 12 QNPNCNIMIFHPT-KEEFNDFDKYIAYMESQGAHRAGLAKI--------IPPKEWKARE 61 (354)
T ss_dssp CCTTCCCEEECCC-TTGGGCHHHHHHHHHHTTGGGGSEEEE--------CCCTTCCSSS
T ss_pred CCCCCCcceecCC-HHHHhCHHHHHHHHHhccccccCcccc--------cCcccccCcc
Confidence 3445567777774 55677777777777665 58999997 8898887653
No 226
>2d0j_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 2; rossmann-like fold, glucuronyltransferase; 2.00A {Homo sapiens}
Probab=33.49 E-value=26 Score=35.80 Aligned_cols=80 Identities=18% Similarity=0.275 Sum_probs=52.0
Q ss_pred eeeeccCCcceeeeEeeeccccccccCCceeecccccchhHHHHHhhh-ccCceEEEEeCCCch-hhhhHHHHHHhhccc
Q 004899 280 RGIIAKGGTPVCRARCVPFGKGIESELPEVVNCSARTGLDMLAKHYAE-AIGFDIVFFLPDSED-DFASYTEFLRYLGSK 357 (724)
Q Consensus 280 ~G~iAKgG~pvC~arC~~~gk~~~~~~P~~ldctaRT~ld~l~khy~~-a~~~~vvff~P~s~~-D~~~y~eFl~YL~~K 357 (724)
.-.|+|+|.+|++.-|..-..--+..+|. -.+.-..+|.++.+|... .....||.|.=|.+. |..-|.| |++.
T Consensus 50 ~~lL~~sgl~y~HL~~~~~~~~~~~~~pr-g~~qRn~AL~~Ir~~~~~~~~~~GVVyFADDdNtY~l~LF~e-mR~i--- 124 (246)
T 2d0j_A 50 SRFLARAGLPSTHLHVPTPRRYKRPGLPR-ATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQE-MRTT--- 124 (246)
T ss_dssp HHHHHHSCSCEEEEECCCCCC----CCCC-CHHHHHHHHHHHHHHSCSSSCCCCEEEECCTTCEECTHHHHH-HTTC---
T ss_pred HHHHHHcCCceEEEecCCccccCCCCCcc-hHHHHHHHHHHHHHhcccccCccceEEEccCCCcccHHHHHH-Hhhh---
Confidence 35689999999999997421100111232 224455799999999852 345589999977666 8888888 5544
Q ss_pred cccceEe
Q 004899 358 NRAGVAK 364 (724)
Q Consensus 358 ~rAgV~K 364 (724)
.|.||-=
T Consensus 125 ~~vgvWP 131 (246)
T 2d0j_A 125 RKVSVWP 131 (246)
T ss_dssp SSEEECC
T ss_pred ceeeEEE
Confidence 3666543
No 227
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=32.24 E-value=7.7 Score=34.49 Aligned_cols=51 Identities=2% Similarity=-0.123 Sum_probs=8.7
Q ss_pred CeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCCCCCCCCCCC
Q 004899 26 NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSYSGT 77 (724)
Q Consensus 26 GFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk~~p~y~sG~ 77 (724)
.++|++|++...|..|++.|+|....|+. .+.++++..........|+.++
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~~~~~~l~V~nL 55 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDVEGMTSLKVDNL 55 (135)
T ss_dssp -------------------------------CCSCCSCSSGGGCCCEEEECC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCCCCCCEEEEeCC
Confidence 47899999999999999999999887764 3344443322222334566655
No 228
>2v1n_A KIN17, protein KIN homolog; nuclear protein, winged helix motif; NMR {Homo sapiens}
Probab=26.65 E-value=25 Score=32.34 Aligned_cols=27 Identities=30% Similarity=0.775 Sum_probs=20.6
Q ss_pred hhhHHHHHHhhccccccceEeecCC-cEEEE
Q 004899 344 FASYTEFLRYLGSKNRAGVAKFDDG-TTLFL 373 (724)
Q Consensus 344 ~~~y~eFl~YL~~K~rAgV~K~~~~-ttLFL 373 (724)
+.+++||+.||| |.|.||+|+. .-+||
T Consensus 63 W~tLT~Fvk~Lg---r~G~c~V~etekG~~I 90 (111)
T 2v1n_A 63 WETLTDFTKWLG---REGLCKVDETPKGWYI 90 (111)
T ss_dssp CSSHHHHHHHHT---TTTSEEEEEETTEEEE
T ss_pred cccHHHHHHHhc---cCCeEEEecCCCceEE
Confidence 378999999998 6799999853 33444
No 229
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=23.05 E-value=33 Score=38.52 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=8.9
Q ss_pred cccCCCCChhhhhhhhc
Q 004899 657 DKVNLEHPNHVQQLQSV 673 (724)
Q Consensus 657 d~~n~~~~~q~~q~q~~ 673 (724)
|-.-...+.+.+|+|.+
T Consensus 38 ~~~~~~~~~~~~~~~~~ 54 (727)
T 4b8c_D 38 DPSLLNNPIWKLQLHLA 54 (727)
T ss_dssp SCCCTTSHHHHHHHHHH
T ss_pred CchhccCchHHHHHHHH
Confidence 33344455666666554
Done!