BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004900
(724 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FT72|RQL3_ARATH ATP-dependent DNA helicase Q-like 3 OS=Arabidopsis thaliana
GN=RECQL3 PE=1 SV=1
Length = 713
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/710 (64%), Positives = 555/710 (78%), Gaps = 26/710 (3%)
Query: 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLM 60
MKKSPL +Q+ + KN + KEALVKLLRWHFGHA FR KQL+AIQAV+SGRDCFCLM
Sbjct: 1 MKKSPLPVQNVQSSDKN--VAGKEALVKLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLM 58
Query: 61 PTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKI 120
PTGGGKS+CYQIPALAKPGIVLVVSPLIALMENQV+ LKEKGIA E+LSSTQ VK KI
Sbjct: 59 PTGGGKSICYQIPALAKPGIVLVVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKI 118
Query: 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
+EDLDSGKPS+RLLYVTPEL AT GFM KL+K+HSRGLLNL+AIDEAHCISSWGHDFRPS
Sbjct: 119 HEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPS 178
Query: 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240
YR+LS+LR+ L DVP+LALTATAAPKVQKDV++SL L+NPLVLKSSFNRPN+FYEVRYKD
Sbjct: 179 YRQLSTLRDSLADVPVLALTATAAPKVQKDVIDSLNLRNPLVLKSSFNRPNIFYEVRYKD 238
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
LLD+AY DL ++LK+ G+ CAI+YCLERTTCD+LS +LS+ GIS AAYHAGLN K RS+V
Sbjct: 239 LLDNAYTDLGNLLKSCGNICAIIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTV 298
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
LDDW+SS+KQ++VATVAFGMGID+KDVR+VCHFNIPKSME+FYQESGRAGRDQLPS+S+L
Sbjct: 299 LDDWLSSKKQIIVATVAFGMGIDKKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVL 358
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 420
YYG+DDR++ME++L +NS++ + SSKK SDF Q+V YCEGSGCRRKKILESF
Sbjct: 359 YYGVDDRKKMEYLL-----RNSENKKS--SSSKKPTSDFEQIVTYCEGSGCRRKKILESF 411
Query: 421 GEQIPVSLCKNSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFI-SSQDMTDGGQYSEFW 479
GE+ PV CK +CDACKHPN +A L EL + ++++ S+IFI SS + T+ GQYSEFW
Sbjct: 412 GEEFPVQQCKKTCDACKHPNQVAHCLEELMTTASRRHNSSRIFITSSNNKTNEGQYSEFW 471
Query: 480 NRDDEASGSEEDISDCDDGIEAVKKVANSKLSTKAGLNERINFLQHAEESYYRNKISDKQ 539
NR+++ S S E+ISD DD EA V KLS K GL+E++ L+ AEE YY +KQ
Sbjct: 472 NRNEDGSNSNEEISDSDDATEAANSVTGPKLSKKLGLDEKLVLLEQAEEKYYER---NKQ 528
Query: 540 VNKPSKNAVSDVLRQGSKEKLLNALRQAQQRLRNL-TIEFEASAIFLENECYNKYGKSGK 598
V K KNA+S+ LR SK++LL+AL + Q L + I+ + + FLENECY KY K+GK
Sbjct: 529 VKKSEKNAISEALRDSSKQRLLDALTRVLQLLACVEEIDSQKGSEFLENECYRKYSKAGK 588
Query: 599 SFYYSQVASTIRWLSTANSIELTNRLGIDTDSPSVNFISKEEPPAAPSPSLEQRPAQITG 658
SFYYSQ+AST+RWL TA+ EL RL SV +++E+ P P L P +
Sbjct: 589 SFYYSQIASTVRWLGTASRDELMTRLS------SVVSLAREQEPLE-EPLLATEPVENIE 641
Query: 659 KELDGSCGSENSIGAFQTES--ESPSTS---LPVIPSFSEFVNRRKVKDN 703
+E DG + S T+ SP S LP +PSFSEFVNRRK+K N
Sbjct: 642 EEDDGKTNTVESRVDEPTQELVVSPILSPIRLPQVPSFSEFVNRRKIKQN 691
>sp|O94762|RECQ5_HUMAN ATP-dependent DNA helicase Q5 OS=Homo sapiens GN=RECQL5 PE=1 SV=2
Length = 991
Score = 355 bits (911), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 187/444 (42%), Positives = 267/444 (60%), Gaps = 18/444 (4%)
Query: 19 PLHEKEALVKLLRWHFGHAQFRDK-QLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA 76
P + + L+ FG F+ Q A AV+ G +D F MPTG GKS+CYQ+PAL
Sbjct: 9 PFDPERRVRSTLKKVFGFDSFKTPLQESATMAVVKGNKDVFVCMPTGAGKSLCYQLPALL 68
Query: 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYV 136
GI +VVSPLIAL+++QV L + L+S + Q + ++ DL+ KP ++LY+
Sbjct: 69 AKGITIVVSPLIALIQDQVDHLLTLKVRVSSLNSKLSAQERKELLADLEREKPQTKILYI 128
Query: 137 TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196
TPE+ A+ F L + SR LL+ + +DEAHC+S WGHDFRP Y +L +LR+ L P
Sbjct: 129 TPEMAASSSFQPTLNSLVSRHLLSYLVVDEAHCVSQWGHDFRPDYLRLGALRSRLGHAPC 188
Query: 197 LALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYA---DLCSV 252
+ALTATA P+VQ+DV +L L+ P+ + K+ R NLFY+V++K+L+ D Y D C
Sbjct: 189 VALTATATPQVQEDVFAALHLKKPVAIFKTPCFRANLFYDVQFKELISDPYGNLKDFC-- 246
Query: 253 LKANGDT-------CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305
LKA G C IVYC R C++L+ LS G++ AYHAGL R+ V +DW+
Sbjct: 247 LKALGQEADKGLSGCGIVYCRTREACEQLAIELSCRGVNAKAYHAGLKASERTLVQNDWM 306
Query: 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
+ V+VAT++FGMG+D+ +VR V H+NI KSM +YQESGRAGRD PS LYY +
Sbjct: 307 EEKVPVIVATISFGMGVDKANVRFVAHWNIAKSMAGYYQESGRAGRDGKPSWCRLYYSRN 366
Query: 366 DRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIP 425
DR ++ F++ K +K + + S K +I F +V +CE GCR I + FG+ +P
Sbjct: 367 DRDQVSFLIRKEVAKLQEKRGNKA-SDKATIMAFDALVTFCEELGCRHAAIAKYFGDALP 425
Query: 426 VSLCKNSCDACKHPNLLAKYLGEL 449
C CD C++P + + L L
Sbjct: 426 A--CAKGCDHCQNPTAVRRRLEAL 447
>sp|O18017|BLM_CAEEL Bloom syndrome protein homolog OS=Caenorhabditis elegans GN=him-6
PE=2 SV=2
Length = 988
Score = 354 bits (908), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 192/423 (45%), Positives = 257/423 (60%), Gaps = 24/423 (5%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L L+ FG QFR +Q I + L G D F LMPTG GKS+CYQ+PA+ PG+ +VVS
Sbjct: 235 LYDTLKSKFGFNQFRHRQKQCILSTLMGHDTFVLMPTGAGKSLCYQLPAVILPGVTVVVS 294
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+E+Q + +KE GI E L++ + KIY +L SG PS++LLYVTPE ++A+
Sbjct: 295 PLRSLIEDQKMKMKELGIGCEALTADLGAPAQEKIYAELGSGNPSIKLLYVTPEKISASG 354
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTAT 202
S +H RGLL IDEAHC+S WGHDFRP Y KLSSLR P VPI+ALTAT
Sbjct: 355 RLNSVFFDLHRRGLLARFVIDEAHCVSQWGHDFRPDYTKLSSLREKYANPPVPIIALTAT 414
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD---- 258
A PK+ D + L +QN + SSF R NL Y DL+ A L +V++
Sbjct: 415 ATPKIVTDARDHLKMQNSKLFISSFVRDNLKY-----DLIPKAARSLINVVEKMKQLYPG 469
Query: 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318
IVYCL R C+ + L+ G+S YHAGLND R SV WI+++ V+ AT+AF
Sbjct: 470 KSGIVYCLSRKECETVQMMLTKAGLSAEVYHAGLNDNLRVSVQRSWIANKFDVICATIAF 529
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H+++PKS+E +YQE+GRAGRD +PS L+ Y D R+ ++ +
Sbjct: 530 GMGIDKPDVRFVIHYSLPKSIEGYYQETGRAGRDGMPSYCLMLYSYHDSIRLRRMIEEGN 589
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNS---CD 434
+ +T RS +++ Q+V YCE S CRRK ++E FGE C+NS CD
Sbjct: 590 T------TTGVRSMH--LNNVLQVVAYCENVSVCRRKMLVEHFGEVYDEQSCRNSKTPCD 641
Query: 435 ACK 437
C+
Sbjct: 642 ICE 644
>sp|P54132|BLM_HUMAN Bloom syndrome protein OS=Homo sapiens GN=BLM PE=1 SV=1
Length = 1417
Score = 346 bits (887), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 185/424 (43%), Positives = 248/424 (58%), Gaps = 16/424 (3%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 651 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 709
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T T IY L P ++LLYVTPE
Sbjct: 710 TVVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDSEATNIYLQLSKKDPIIKLLYVTPEK 769
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 770 ICASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 829
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 830 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 889
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 890 SGIIYCLSRRECDTMADTLQRDGLAALAYHAGLSDSARDEVQQKWINQDGCQVICATIAF 949
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R++ ++ +
Sbjct: 950 GMGIDKPDVRFVIHASLPKSVEGYYQESGRAGRDGEISHCLLFYTYHDVTRLKRLIMMEK 1009
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ-IPVSLCKN----S 432
N + T ++ MV YCE + CRR ++L FGE CK S
Sbjct: 1010 DGNHHTRETH-------FNNLYSMVHYCENITECRRIQLLAYFGENGFNPDFCKKHPDVS 1062
Query: 433 CDAC 436
CD C
Sbjct: 1063 CDNC 1066
>sp|O88700|BLM_MOUSE Bloom syndrome protein homolog OS=Mus musculus GN=Blm PE=1 SV=1
Length = 1416
Score = 344 bits (883), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 185/424 (43%), Positives = 251/424 (59%), Gaps = 16/424 (3%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG FR QL+AI A L G DCF LMPTGGGKS+CYQ+PA PG+
Sbjct: 659 HTKE-MMKIFHKKFGLHNFRTNQLEAINAALLGEDCFILMPTGGGKSLCYQLPACVSPGV 717
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 718 TIVISPLRSLIVDQVQKLTSFDIPATYLTGDKTDSEAANIYLQLSKKDPIIKLLYVTPEK 777
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S L+ ++ R LL IDEAHC+S WGHDFR Y++++ LR P VP++AL
Sbjct: 778 VCASNRLISTLENLYERKLLARFVIDEAHCVSQWGHDFRQDYKRMNMLRQKFPSVPVMAL 837
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+VQKD++ L + P V SFNR NL Y V K A+ L + K +
Sbjct: 838 TATANPRVQKDILTQLKILRPQVFSMSFNRHNLKYYVLPKKPKKVAFDCLEWIRKHHPYD 897
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL+D AR V WI+ QV+ AT+AF
Sbjct: 898 SGIIYCLSRRECDTMADTLQREGLAALAYHAGLSDSARDEVQHKWINQDNCQVICATIAF 957
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKSME +YQESGRAGRD S +L+Y D R++ ++ +
Sbjct: 958 GMGIDKPDVRFVIHASLPKSMEGYYQESGRAGRDGEISHCVLFYTYHDVTRLKRLIMMEK 1017
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQ-IPVSLCKN----S 432
N + T+E +++ MV YCE + CRR ++L FGE+ CK S
Sbjct: 1018 DGN---YHTKE----THVNNLYSMVHYCENITECRRIQLLAYFGEKGFNPDFCKKYPDVS 1070
Query: 433 CDAC 436
CD C
Sbjct: 1071 CDNC 1074
>sp|Q9DEY9|BLM_XENLA Bloom syndrome protein homolog OS=Xenopus laevis GN=blm PE=2 SV=1
Length = 1364
Score = 337 bits (865), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 180/424 (42%), Positives = 246/424 (58%), Gaps = 16/424 (3%)
Query: 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGI 80
H KE ++K+ FG +FR QL+AI A L G DCF LMPTGGGKS+CYQ+P PG+
Sbjct: 603 HSKE-MMKIFHKKFGLHRFRTNQLEAINACLCGEDCFILMPTGGGKSLCYQLPGCISPGV 661
Query: 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE- 139
+V+SPL +L+ +QV L I +L+ +T IY L P ++LLYVTPE
Sbjct: 662 TIVISPLRSLIVDQVQKLTSLDIPATYLTGDKTDAEAASIYLQLSKKDPIIKLLYVTPEK 721
Query: 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
+ A+ +S ++ ++ R LL IDEAHC+S WGHDFRP Y++L+ LR VP++AL
Sbjct: 722 VCASTRLISTMENLYERQLLARFVIDEAHCVSQWGHDFRPDYKRLNVLRQKFQSVPMMAL 781
Query: 200 TATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT 259
TATA P+V+KD++ L + P + SFNR NL YEV K A + + K + +
Sbjct: 782 TATANPRVKKDILNQLKMTKPQIFTMSFNRDNLKYEVLPKKPKRVALDCVEWIKKHHPND 841
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAF 318
I+YCL R CD ++ L G++ AYHAGL D R V WI+ QV+ AT+AF
Sbjct: 842 SGIIYCLSRHECDTMADTLQKEGLAALAYHAGLADSNRDYVQHKWINQDDCQVICATIAF 901
Query: 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378
GMGID+ DVR V H ++PKS+E +YQESGRAGRD S LL+Y D R+ ++ +
Sbjct: 902 GMGIDKPDVRYVIHASLPKSVEGYYQESGRAGRDGETSHCLLFYSYHDVTRIRRLIQMEK 961
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGE-QIPVSLCKN----S 432
NS + T ++ MV YCE CRR ++L FGE + CK +
Sbjct: 962 DGNSHTKQTH-------FNNLYSMVHYCENVVECRRMQLLSYFGENNFNPNFCKEHTQVA 1014
Query: 433 CDAC 436
CD C
Sbjct: 1015 CDNC 1018
>sp|Q9VGI8|BLM_DROME Bloom syndrome protein homolog OS=Drosophila melanogaster GN=mus309
PE=1 SV=1
Length = 1487
Score = 337 bits (863), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/418 (41%), Positives = 246/418 (58%), Gaps = 15/418 (3%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L+ L + FG FR QL I A L G DCF LMPTGGGKS+CYQ+PA+ G+ +V+S
Sbjct: 725 LMHGLSYSFGLKSFRPNQLQVINATLLGNDCFVLMPTGGGKSLCYQLPAILTEGVTIVIS 784
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATP 144
PL +L+ +Q+ L I + LS Q M IY DL+S P ++LLYVTPE ++++
Sbjct: 785 PLKSLIFDQINKLASLDICAKSLSGEQKMADVMAIYRDLESQPPMVKLLYVTPEKISSSA 844
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
F L ++S ++ IDEAHC+S WGHDFRP Y+KL L+ P+VP +ALTATA
Sbjct: 845 RFQDTLDTLNSNNYISRFVIDEAHCVSQWGHDFRPDYKKLGVLKKRFPNVPTIALTATAT 904
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDT-CAIV 263
P+V+ D++ L L+N SSFNR NL Y V K + D+ +++ I+
Sbjct: 905 PRVRLDILAQLNLKNCKWFLSSFNRSNLRYRVLPKKGVS-TLDDISRYIRSKPQHFSGII 963
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R CDE S + G+ +YHAGL D R S DW++ + +V+ ATVAFGMGID
Sbjct: 964 YCLSRKECDETSKKMCKDGVRAVSYHAGLTDTDRESRQKDWLTGKMRVICATVAFGMGID 1023
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H+++PKS+E +YQE+GRAGRD + +LYY D R++ +L ++
Sbjct: 1024 KPDVRFVLHYSLPKSIEGYYQEAGRAGRDGDVADCILYYNYSDMLRIKKMLDSDK----- 1078
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLC----KNSCDAC 436
+ + K + + ++V YCE + CRR + L+ FGE C + +CD C
Sbjct: 1079 --ALQYNVKKIHVDNLYRIVGYCENLTDCRRAQQLDYFGEHFTSEQCLENRETACDNC 1134
>sp|P35187|SGS1_YEAST ATP-dependent helicase SGS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGS1 PE=1 SV=1
Length = 1447
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 166/419 (39%), Positives = 256/419 (61%), Gaps = 20/419 (4%)
Query: 29 LLRWH--FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG----IVL 82
L R H F FR QL+A+ A L G+D F LMPTGGGKS+CYQ+PA+ K G +
Sbjct: 667 LYRLHEVFKLPGFRPNQLEAVNATLQGKDVFVLMPTGGGKSLCYQLPAVVKSGKTHGTTI 726
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-T 141
V+SPLI+LM++QV L K I SS T + + + + +G L L+Y++PE+ +
Sbjct: 727 VISPLISLMQDQVEHLLNKNIKASMFSSRGTAEQRRQTFNLFINGL--LDLVYISPEMIS 784
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
A+ + ++++ G L + +DEAHC+S+WGHDFRP Y++L + PD+P++ALTA
Sbjct: 785 ASEQCKRAISRLYADGKLARIVVDEAHCVSNWGHDFRPDYKELKFFKREYPDIPMIALTA 844
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTC 260
TA+ +V+ D++ +L L+ P+ LK SFNR NL+YEV K + ++C +K+ +
Sbjct: 845 TASEQVRMDIIHNLELKEPVFLKQSFNRTNLYYEVNKK--TKNTIFEICDAVKSRFKNQT 902
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC + +C++ SA + GI CA YHAG+ R SV W + QV+ ATVAFGM
Sbjct: 903 GIIYCHSKKSCEQTSAQMQRNGIKCAYYHAGMEPDERLSVQKAWQADEIQVICATVAFGM 962
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GID+ DVR V HF +P+++E +YQE+GRAGRD S + Y+ D R M+ ++ K+++
Sbjct: 963 GIDKPDVRFVYHFTVPRTLEGYYQETGRAGRDGNYSYCITYFSFRDIRTMQTMIQKDKNL 1022
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDACKH 438
+ + + +K ++ Q++ YC+ + CRRK +L F E LC +CD C++
Sbjct: 1023 DRE-------NKEKHLNKLQQVMAYCDNVTDCRRKLVLSYFNEDFDSKLCHKNCDNCRN 1074
>sp|Q9FT73|MED34_ARATH Mediator of RNA polymerase II transcription subunit 34
OS=Arabidopsis thaliana GN=MED34 PE=1 SV=1
Length = 705
Score = 335 bits (860), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 176/409 (43%), Positives = 249/409 (60%), Gaps = 24/409 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG +++R Q + I A+++GRD +M GGGKS+CYQ+PA+ + G LVVSPL++L+++
Sbjct: 85 FGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTTLVVSPLLSLIQD 144
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
QV+GL GI+ L+ST + + +Y+ L+ G+ L++LYVTPE ++ + FMSKL+K
Sbjct: 145 QVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKVSKSKRFMSKLEK 204
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
H+ G L+L++IDEAHC S WGHDFRP Y+ LS L+ P VP++ALTATA KVQ D++
Sbjct: 205 CHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPKVPMVALTATATQKVQNDLI 264
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKD----LLDDAYADLCSVLKANGDTCAIVYCLER 268
E L + + SS NRPNLFY VR K L+ D A+ +N ++ IVYC R
Sbjct: 265 EMLHIPKCVKFVSSVNRPNLFYSVREKSAVGKLVVDEIAEFIRESYSNNES-GIVYCFSR 323
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
C++++ L GIS YHA ++ R V W ++ QV+V TVAFGMGI++ DVR
Sbjct: 324 KECEQIAGDLRERGISADYYHADMDANMREKVHMRWSKNKLQVIVGTVAFGMGINKPDVR 383
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD LPS+ +L++ D R S
Sbjct: 384 FVIHHSLSKSMETYYQESGRAGRDGLPSECILFFRSADVPR------------QSSMVFY 431
Query: 389 ERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDAC 436
E S +++ D +V YC+ + CRR FGE P C CD C
Sbjct: 432 EYSGLQNLYD---IVRYCQSKTKCRRSAFFRHFGE--PSQDCNGMCDNC 475
>sp|Q09811|HUS2_SCHPO ATP-dependent DNA helicase hus2/rqh1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rqh1 PE=1 SV=1
Length = 1328
Score = 335 bits (859), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 175/417 (41%), Positives = 256/417 (61%), Gaps = 23/417 (5%)
Query: 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVS 85
L+ F FR QL+AI LSG+D F LMPTGGGKS+CYQ+PA+ A G+ LV+S
Sbjct: 511 LKHKFHLKGFRKNQLEAINGTLSGKDVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVIS 570
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PL++LM++Q+ L++ I LS Q + ++ L + ++LLYVTPE A+ G
Sbjct: 571 PLLSLMQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGLASNG 630
Query: 146 FMSK-LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+++ LK ++ R LL + IDEAHC+S WGHDFRP Y++L LR+ +P +ALTATA
Sbjct: 631 AITRVLKSLYERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATAN 690
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG--DTCAI 262
V+KD++ +L ++N L LKSSFNRPNLFYE++ K D Y +L + +NG I
Sbjct: 691 EIVKKDIINTLRMENCLELKSSFNRPNLFYEIKPK---KDLYTELYRFI-SNGHLHESGI 746
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
+YCL RT+C++++A L G+ YHAGL R + ++W S +++VAT+AFGMG
Sbjct: 747 IYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMG 806
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQSK 380
+D+ DVR V H + PKS+E +YQE+GRAGRD P+ +++Y D + I+S +
Sbjct: 807 VDKGDVRFVIHHSFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMSGDGDA 866
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDAC 436
T+ER + Q++ +CE + CRRK++L FGE C+ CD C
Sbjct: 867 E-----TKERQRQM----LRQVIQFCENKTDCRRKQVLAYFGENFDKVHCRKGCDIC 914
>sp|Q9I920|BLM_CHICK Bloom syndrome protein homolog (Fragment) OS=Gallus gallus GN=BLM
PE=2 SV=1
Length = 1142
Score = 333 bits (854), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 186/448 (41%), Positives = 254/448 (56%), Gaps = 24/448 (5%)
Query: 6 LAMQSTSQTQKNKPLHEK---------EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDC 56
++++S+S+ + P HE+ E ++K+ FG FR QL+AI A L G DC
Sbjct: 356 ISVKSSSEPLVHNPAHERFRGMKFSHSEEMLKIFHRKFGLHSFRTNQLEAINAALLGEDC 415
Query: 57 FCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116
F LMPTGGGKS+CYQ+PA G+ +V+SPL +L+ +QV LK IA +L+ T
Sbjct: 416 FILMPTGGGKSLCYQLPACVSAGVTVVISPLRSLIIDQVQKLKTLDIAATYLTGDITDAD 475
Query: 117 KTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175
+K Y L P ++LLYVTPE + A+ +S L+ ++ R LL IDEAHC+S WGH
Sbjct: 476 ASKTYMQLSKKDPIIKLLYVTPEKVCASNRLLSALENLYDRKLLARFVIDEAHCVSQWGH 535
Query: 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYE 235
DFR Y++L+ LR VP++ALTATA P+VQKD+ L + P V SFNR NL Y+
Sbjct: 536 DFRKDYKRLNMLRKKFHSVPMMALTATANPRVQKDIQNQLEMLKPQVFTMSFNRHNLKYD 595
Query: 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDK 295
V K A L + K + I+YCL R CD +A L G++ AYHAGL D
Sbjct: 596 VLPKKPKKVAMDCLEWIKKYHPHDSGIIYCLSRHECDTTAAILQKEGLAALAYHAGLTDS 655
Query: 296 ARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354
R V W++ QV+ AT+AFGMGID+ DVR V H ++PKS+E +Y ESGRAGRD
Sbjct: 656 NRDLVQKKWVNQEGCQVICATIAFGMGIDKPDVRYVIHASLPKSVEGYYHESGRAGRDGE 715
Query: 355 PSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRR 413
S LL+Y D R+ ++ + NS + T ++ MV YCE CRR
Sbjct: 716 MSHCLLFYSYSDVTRLRRLILMEKDGNSHTRQTH-------FNNLYSMVHYCENVVDCRR 768
Query: 414 KKILESFGE-QIPVSLCKNS----CDAC 436
++L FGE + CK+ CD C
Sbjct: 769 IQLLAYFGETDFNPNFCKDHPEVICDNC 796
>sp|Q8L840|RQL4A_ARATH ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana
GN=RECQL4A PE=2 SV=1
Length = 1188
Score = 330 bits (846), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 171/412 (41%), Positives = 247/412 (59%), Gaps = 11/412 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 449 FGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGITLVISPLVSLIQD 508
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I LS+ + KI+++L+S +LLYVTPE A + + L+
Sbjct: 509 QIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKVAKSDSLLRHLEN 568
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SRGLL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 569 LNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVV 628
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTC 271
++L L N +V + SFNRPNL+Y V K D+ +K N D C I+YCL R C
Sbjct: 629 QALGLVNCVVFRQSFNRPNLWYSVVPK--TKKCLEDIDKFIKENHFDECGIIYCLSRMDC 686
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
+++S L G A YH + + R+ + W ++ ATVAFGMGI++ DVR V
Sbjct: 687 EKVSERLQEFGHKAAFYHGSMEPEQRAFIQTQWSKDEINIICATVAFGMGINKPDVRFVI 746
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK---NQSKNSQSFSTR 388
H ++PKS+E ++QE GRAGRD S +LYYG D R++ ++S+ +QS + ++
Sbjct: 747 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYGYGDYIRVKHMISQGGVDQSPMATGYNRV 806
Query: 389 ERSSK---KSISDFSQMVDYCEGS-GCRRKKILESFGEQIPVSLCKNSCDAC 436
S + + + +MV YCE CRR L GE+ + CK +CD C
Sbjct: 807 ASSGRLLETNTENLLRMVRYCENEVECRRFLQLVHLGEKFDSTNCKKTCDNC 858
>sp|Q9FT70|RQL4B_ARATH ATP-dependent DNA helicase Q-like 4B OS=Arabidopsis thaliana
GN=RECQL4B PE=2 SV=1
Length = 1150
Score = 325 bits (832), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 169/418 (40%), Positives = 248/418 (59%), Gaps = 11/418 (2%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q + I A +SG D F LMPTGGGKS+ YQ+PAL GI LV+SPL++L+++
Sbjct: 465 FGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGITLVISPLVSLIQD 524
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ L + I+ LS+ + +I ++L S K +LLYVTPE A + + L+
Sbjct: 525 QIMNLLQTNISAASLSAGMEWAEQLEILQELSSEKSKYKLLYVTPEKVAKSESLLRHLEI 584
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++SR LL IDEAHC+S WGHDFRP Y+ L L+ P++P+LALTATA V++DV+
Sbjct: 585 LNSRSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPNIPMLALTATATTSVKEDVV 644
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG-DTCAIVYCLERTTC 271
++L L N +V + SFNRPNL+Y V K + D+ ++ N D C I+YCL R C
Sbjct: 645 QALGLVNCVVFRQSFNRPNLWYSVVPKT--NKCLEDIDKFIRENHFDECGIIYCLSRMDC 702
Query: 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC 331
++++ L G A YH ++ R+ V W ++ ATVAFGMGI++ DVR V
Sbjct: 703 EKVTEALRVFGHKAAFYHGSMDPGKRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVI 762
Query: 332 HFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK---NQSKNSQSFSTR 388
H ++PKS+E ++QE GRAGRD S +LYY D R++ ++S+ Q + ++ +
Sbjct: 763 HHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYTDYIRVKHMISQGGLGQGQMKMGYNCK 822
Query: 389 ERSSK---KSISDFSQMVDYCEGS-GCRRKKILESFGEQIPVSLCKNSCDACKHPNLL 442
S + + + +MV YCE CRR L GE+ + CKN+CD C +L
Sbjct: 823 ASSGRMLETNTENLLRMVSYCENEVDCRRFLQLVHLGEKFDSTNCKNTCDNCSSSKIL 880
>sp|Q9FT74|RQL1_ARATH ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana
GN=RECQL1 PE=2 SV=1
Length = 606
Score = 318 bits (816), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 172/421 (40%), Positives = 246/421 (58%), Gaps = 33/421 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
FG+ FR Q A +A + +DCF LMPTGGGKS+CYQ+PA K G+ +V+SPL++L+++
Sbjct: 202 FGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQD 261
Query: 94 QVIGLKEK-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLK 151
Q++ L K GI FL+S QT + ++L PS +LLYVTPE + + F+ L+
Sbjct: 262 QIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLETLR 321
Query: 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211
+ +GLL +DEAHC+S WGHDFRP YR+L L+ P VP++ALTATA V +DV
Sbjct: 322 CLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPRVPVMALTATATESVCQDV 381
Query: 212 MESLCLQNPLVLKSSFNRPNLFYEV---------RYKDLLDDAYADLCSVLKANGDTCAI 262
++SL + VLK SF+R NL YEV + ++LL D + D I
Sbjct: 382 LKSLRIPRAPVLKMSFDRINLKYEVIVKTKEPLKQLQELLRDRFK----------DQSGI 431
Query: 263 VYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
VYCL ++ C +++ +L+ + YHAG+ K R V W + ++V AT+AFGMG
Sbjct: 432 VYCLSKSECVDVAKFLNEKCKVKTVYYHAGVPAKQRVDVQRKWQTGEVRIVCATIAFGMG 491
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+ DVR V H + K++E++YQESGRAGRD L ++ + Y D R+ +L Q +N
Sbjct: 492 IDKADVRFVIHNTLSKAVESYYQESGRAGRDGLQAQCICLYQKKDFSRVVCMLRNGQGRN 551
Query: 382 SQSFSTRERSSKKSISDFSQMVDYCE-GSGCRRKKILESFGEQIPVSLCK---NSCDACK 437
F + +KK M YCE + CRR+ +LE FGE +CK N CD C+
Sbjct: 552 MDRFKSAMAQAKK-------MQQYCELKTECRRQMLLEYFGESFDRMICKSSLNPCDNCE 604
Query: 438 H 438
Sbjct: 605 R 605
>sp|P15043|RECQ_ECOLI ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12)
GN=recQ PE=1 SV=5
Length = 609
Score = 316 bits (810), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 174/416 (41%), Positives = 248/416 (59%), Gaps = 28/416 (6%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q + I VLSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L+ G+A L+STQT + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 EHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R+ V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPQGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE--QIPVSLCKNSCDACKHP 439
ER ++ F+ E CRR +L FGE Q P C N CD C P
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGEGRQEP---CGN-CDICLDP 406
>sp|P71359|RECQ_HAEIN ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recQ PE=3 SV=1
Length = 619
Score = 313 bits (801), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 175/423 (41%), Positives = 252/423 (59%), Gaps = 30/423 (7%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
EK + +L+ FG+ FR Q + I A L+G+D +M TG GKS+CYQIPAL G+
Sbjct: 12 EKPTALSVLKSVFGYQSFRKGQEEVINAALNGQDALVVMATGNGKSLCYQIPALCFDGLT 71
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LV+SPLI+LM++QV L+ GI +FL+S+QT++ + ++ L SG+ L+LLYV+PE
Sbjct: 72 LVISPLISLMKDQVDQLQANGIEADFLNSSQTLEQQQQVQNKLISGQ--LKLLYVSPEKV 129
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTA 201
T F ++ S + +AIDEAHCIS WGHDFRP Y +L L+ PD PI+ALTA
Sbjct: 130 MTNSFF----QLISYSKVCFIAIDEAHCISQWGHDFRPEYTQLGGLKASFPDAPIMALTA 185
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY--EVRYKDLLDDAYADLCSVLKANGDT 259
TA Q+D++ L L+N SF+RPN+ Y E +YK + L + A
Sbjct: 186 TADYATQQDILRHLNLKNLHKYIGSFDRPNIRYTLEEKYKPM-----EQLTRFVLAQKGK 240
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R + ++ L G+S AAYHAG+ R V D+ QVVVAT+AFG
Sbjct: 241 SGIIYCNSRNKVERIAESLRNKGVSAAAYHAGMETAIRERVQQDFQRDNVQVVVATIAFG 300
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME-FILSKNQ 378
MGI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D ++ +L K +
Sbjct: 301 MGINKSNVRFVAHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLQKILLEKPE 360
Query: 379 SKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE--QIPVSLCKNSCDAC 436
+ Q E+ ++I +F+ E CRR +L FGE Q P C N+CD C
Sbjct: 361 TPQRQI----EQHKLEAIGEFA------ESQTCRRLVLLNYFGEHRQTP---C-NNCDIC 406
Query: 437 KHP 439
P
Sbjct: 407 LDP 409
>sp|Q6AYJ1|RECQ1_RAT ATP-dependent DNA helicase Q1 OS=Rattus norvegicus GN=Recql PE=2
SV=1
Length = 621
Score = 310 bits (795), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 165/414 (39%), Positives = 241/414 (58%), Gaps = 23/414 (5%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR F +FR QL+ + A ++ +D F +MPTGGGKS+CYQ+PAL G LV+ PLI
Sbjct: 82 VLRDVFKLQKFRPLQLETVNATMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFM 147
+LME+Q++ L++ GI+ L+S+ + + ++ ++ + L+L+YVTPE A + FM
Sbjct: 142 SLMEDQLMVLQQLGISATMLNSSSSKEHVKCVHTEMMNKNSHLKLIYVTPEKIAKSKMFM 201
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S+L+K + G L VA+DE HC S WGHDFRP Y+ L L+ P++ ++ LTATA V
Sbjct: 202 SRLEKAYEAGRLTGVAVDEVHCCSQWGHDFRPDYKALGILKRQFPNISLIGLTATATNHV 261
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKANG---DTCAIV 263
KD + LC++ L +SFNRPNL+YEVR K +D ++ +++ NG I+
Sbjct: 262 LKDAQKILCVEKCLTFTASFNRPNLYYEVRQKPSSAEDFIENIANLI--NGRYKGKSGII 319
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YC + ++++ L G+ YHA + + R+ V W ++ QVVVATVAFGMGID
Sbjct: 320 YCFSQKDSEQVTISLQKLGVRAGTYHANMEPEDRTKVHTQWSANELQVVVATVAFGMGID 379
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ DVR V H ++ KSME +YQESGRAGRD + +LYYG D R+
Sbjct: 380 KPDVRFVIHHSMSKSMENYYQESGRAGRDDWRADCILYYGFGDIFRIS------------ 427
Query: 384 SFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDAC 436
S E ++ + +MV YC+ S CRR I + F E C CD C
Sbjct: 428 SMVVMENVGQQKL---YEMVSYCQNISKCRRALIAQHFDEVWNADACNKMCDNC 478
>sp|Q9TXJ8|RECQ1_CAEEL Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis elegans
GN=K02F3.12 PE=3 SV=3
Length = 631
Score = 310 bits (793), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 174/418 (41%), Positives = 242/418 (57%), Gaps = 21/418 (5%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
K+L+ F +FR Q AI AV+S D ++ TGGGKS+CYQ+PAL G+ LVVSPL
Sbjct: 99 KILKEQFHLEKFRPLQRAAINAVMSKEDAVVILSTGGGKSLCYQLPALLANGLALVVSPL 158
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGF 146
I+L+E+Q++ L+ GI L++ + + ++ + + + RLLYVTPE L +
Sbjct: 159 ISLVEDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKSKKM 218
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
M+KL+K S G L L+AIDE HC S WGHDFR Y L+ L+ VPIL LTATA
Sbjct: 219 MNKLEKSLSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSN 278
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKAN--GDTCAIV 263
V DV + L +Q L ++ FNR NL Y+V K D+ ++ +K + G T I+
Sbjct: 279 VLDDVKDMLGIQAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIKRDFAGQT-GII 337
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
YCL R C++++ L + GI YHA + RS WIS + QV+VATVAFGMGID
Sbjct: 338 YCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGID 397
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ 383
+ +VR V H ++PKS+E +YQESGRAGRD P+ +LYY + D I ++
Sbjct: 398 KPNVRFVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLAD------IFKQS------ 445
Query: 384 SFSTRERSSKKSISDFSQMVDY-CEGSGCRRKKILESFGEQIPVSLCKNSCDACKHPN 440
S +ER+ I + MV Y + S CRR K+ E F E S C+ CD C++ N
Sbjct: 446 SMVQQERT---GIQNLYNMVRYAADSSTCRRVKLAEHFEEAWEPSWCQKQCDTCENGN 500
>sp|Q9Z129|RECQ1_MOUSE ATP-dependent DNA helicase Q1 OS=Mus musculus GN=Recql PE=1 SV=2
Length = 648
Score = 309 bits (792), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 165/409 (40%), Positives = 234/409 (57%), Gaps = 23/409 (5%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F +FR QL+ I ++ +D F +MPTGGGKS+CYQ+PAL G LV+ PLI+LME+
Sbjct: 87 FKLQKFRPLQLETINVTMARKDIFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMED 146
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A + FMS+L+K
Sbjct: 147 QLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSQLKLIYVTPEKIAKSKMFMSRLEK 206
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ G L A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V KDV
Sbjct: 207 AYEAGRLTGAAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLMGLTATATNHVLKDVQ 266
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYK-DLLDDAYADLCSVLKANG---DTCAIVYCLER 268
+ LC+ L +SFNRPNLFYEVR K +D D+ ++ NG I+YC +
Sbjct: 267 KILCVGKCLTFTASFNRPNLFYEVRQKPSSAEDFTEDIVKLI--NGRYKGQSGIIYCFSQ 324
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
++++ L GI YHA + + ++ V W ++ QVVVATVAFGMGID+ DVR
Sbjct: 325 KDSEQITISLQKLGIHAGTYHANMEPEDKTKVHTQWSANELQVVVATVAFGMGIDKPDVR 384
Query: 329 LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTR 388
V H ++ KSME +YQESGRAGRD + +LYYG D R+ S
Sbjct: 385 FVIHHSMSKSMENYYQESGRAGRDDSRADCILYYGFGDIFRIS------------SMVVM 432
Query: 389 ERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDAC 436
E ++ + + MV YC+ S CRR I + F E C CD C
Sbjct: 433 ENVGQQKLYE---MVSYCQNVSKCRRVLIAQHFDEVWNADACNKMCDNC 478
>sp|P40724|RECQ_SALTY ATP-dependent DNA helicase RecQ OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=recQ PE=3 SV=3
Length = 609
Score = 309 bits (791), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 172/416 (41%), Positives = 245/416 (58%), Gaps = 28/416 (6%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ FG+ QFR Q I LSGRDC +MPTGGGKS+CYQIPAL G+ +VVSPL
Sbjct: 15 QVLQETFGYQQFRPGQEAIIDTALSGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPL 74
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM 147
I+LM++QV L G+A L+STQ+ + + ++ +G+ +RLLY+ PE F+
Sbjct: 75 ISLMKDQVDQLLANGVAAACLNSTQSREQQLEVMAGCRTGQ--IRLLYIAPERLMLDNFL 132
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
L + L+A+DEAHCIS WGHDFRP Y L LR P +P +ALTATA
Sbjct: 133 DHLAHWNP----VLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPALPFMALTATADDTT 188
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTCAIVYC 265
++D++ L L +PL+ SSF+RPN+ Y + ++K L L ++ I+YC
Sbjct: 189 RQDIIRLLGLNDPLIQISSFDRPNIRYMLMEKFKPL-----DQLMRYVQEQRGKSGIIYC 243
Query: 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325
R ++ +A L + GIS AAYHAGL + R V + + Q+VVATVAFGMGI++
Sbjct: 244 NSRAKVEDTAARLQSRGISAAAYHAGLENAIRVDVQEKFQRDDLQIVVATVAFGMGINKP 303
Query: 326 DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSF 385
+VR V HF+IP+++E++YQE+GRAGRD LP++++L+Y D M ++ + K +
Sbjct: 304 NVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPAD---MAWLRRCLEEKPAGQL 360
Query: 386 STRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE--QIPVSLCKNSCDACKHP 439
ER ++ F+ E CRR +L FGE Q P C N CD C P
Sbjct: 361 QDIERHKLNAMGAFA------EAQTCRRLVLLNYFGEGRQEP---CGN-CDICLDP 406
>sp|A8WK63|RECQ1_CAEBR Putative ATP-dependent DNA helicase Q1 OS=Caenorhabditis briggsae
GN=CBG24191 PE=3 SV=1
Length = 618
Score = 308 bits (790), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 166/414 (40%), Positives = 236/414 (57%), Gaps = 19/414 (4%)
Query: 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
++L+ F +FR Q AI AV+S D ++ TGGGKS+CYQ+PAL G+ LV+SPL
Sbjct: 76 QILKNKFRLEKFRPLQSAAINAVMSKEDAIVILSTGGGKSLCYQLPALLAKGLTLVISPL 135
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGF 146
++L+E+Q++ L++ GI L++ ++ + + G LRLLYVTPE L +
Sbjct: 136 VSLVEDQIMQLQKLGIDAASLNANTPKDEAKRVEQAITKGSTELRLLYVTPEKLAKSKRM 195
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206
M++L+K G L L+AIDE HC S WGHDFR Y L+ L+ VPIL LTATA
Sbjct: 196 MNQLEKSLGVGYLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSN 255
Query: 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYAD--LCSVLKANGDTCAIVY 264
V DV + L + +V ++ FNR NL Y+V K +D + + ++ + I+Y
Sbjct: 256 VLDDVKKMLGIPVAIVFRAGFNRANLNYKVLTKPGSEDECVEKIVRTIKRKFSGKTGIIY 315
Query: 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324
CL R C++L+ L A GI YHA + RS+ W+S QV+VATVAFGMGID+
Sbjct: 316 CLSRNDCEKLAKSLKANGIRAKHYHAYMEPVDRSAAHQKWVSGEIQVIVATVAFGMGIDK 375
Query: 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQS 384
DVR V H ++PKS+E +YQESGRAGRD LP+ +LYY M D + ++ + Q+
Sbjct: 376 PDVRFVIHHSLPKSIENYYQESGRAGRDGLPATCILYYRMSDIFKQSSMIQQEQT----- 430
Query: 385 FSTRERSSKKSISDFSQMVDYCEGS-GCRRKKILESFGEQIPVSLCKNSCDACK 437
I++ MV Y + CRR K+ E F E S C+ CD C+
Sbjct: 431 ----------GIANLYNMVRYASDTVTCRRVKLAEHFEEAWEPSWCQKQCDVCE 474
>sp|P46063|RECQ1_HUMAN ATP-dependent DNA helicase Q1 OS=Homo sapiens GN=RECQL PE=1 SV=3
Length = 649
Score = 308 bits (788), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 160/415 (38%), Positives = 236/415 (56%), Gaps = 25/415 (6%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+L+ F +FR QL+ I ++G++ F +MPTGGGKS+CYQ+PAL G LV+ PLI
Sbjct: 82 ILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLI 141
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFM 147
+LME+Q++ LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A + FM
Sbjct: 142 SLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFM 201
Query: 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207
S+L+K + +A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V
Sbjct: 202 SRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHV 261
Query: 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK-----DLLDDAYADLCSVLKANGDTCAI 262
D + LC++ +SFNRPNL+YEVR K D ++D + K I
Sbjct: 262 LTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQS---GI 318
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
+YC + ++++ L GI AYHA L + +++V W ++ QVVVATVAFGMGI
Sbjct: 319 IYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGI 378
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ DVR V H ++ KSME +YQESGRAGRD + + +LYYG D R+
Sbjct: 379 DKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRI------------ 426
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDAC 436
S E ++ + + MV YC+ S CRR + + F E C CD C
Sbjct: 427 SSMVVMENVGQQKLYE---MVSYCQNISKCRRVLMAQHFDEVWNSEACNKMCDNC 478
>sp|Q9CL21|RECQ_PASMU ATP-dependent DNA helicase RecQ OS=Pasteurella multocida (strain
Pm70) GN=recQ PE=3 SV=1
Length = 632
Score = 307 bits (787), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 172/422 (40%), Positives = 247/422 (58%), Gaps = 30/422 (7%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
K+ + +L FG+ FR Q + I A L G+D +M TG GKS+CYQIPAL G+ L
Sbjct: 23 KQTALDVLHAVFGYQSFRKGQEEVIDATLMGKDSLVIMATGNGKSLCYQIPALCFEGLTL 82
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LM++QV L GI ++L+S+QT + ++ L SG +L+LLYV+PE
Sbjct: 83 VISPLISLMKDQVDQLLANGIEADYLNSSQTFTEQQQVQNKLMSG--TLKLLYVSPEKVM 140
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
T F + S ++ VAIDEAHCIS WGHDFRP Y +L L++ P PI+ALTAT
Sbjct: 141 TTSFFHLI----SHCKVSFVAIDEAHCISQWGHDFRPEYTQLGGLKSCFPHAPIMALTAT 196
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV--RYKDLLDDAYADLCSVLKANGDTC 260
A ++D++ L LQ+P V SF+RPN+ Y + ++K + LC +
Sbjct: 197 ADHATRQDILRHLNLQSPHVYIGSFDRPNIRYTLVEKFKPM-----EQLCRFVLGQKGKS 251
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
I+YC R+ + ++ L G+S AYHAGL R V + QVVVAT+AFGM
Sbjct: 252 GIIYCNSRSKVERIAESLRNKGVSAQAYHAGLETSQREQVQRAFQRDNVQVVVATIAFGM 311
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM-EFILSKNQS 379
GI++ +VR V HF++P+S+E++YQE+GRAGRD LP++++L+Y D + + +L K +S
Sbjct: 312 GINKSNVRFVVHFDLPRSIESYYQETGRAGRDDLPAEAVLFYEPADYAWLHKILLEKPES 371
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGE--QIPVSLCKNSCDACK 437
Q E ++I +F+ E CRR +L FGE Q P C+N CD C
Sbjct: 372 PQRQI----EALKLQAIGEFA------ESQTCRRLVLLNYFGEHQQKP---CQN-CDICL 417
Query: 438 HP 439
P
Sbjct: 418 DP 419
>sp|Q5RF63|RECQ1_PONAB ATP-dependent DNA helicase Q1 OS=Pongo abelii GN=RECQL PE=2 SV=1
Length = 649
Score = 306 bits (783), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 158/410 (38%), Positives = 232/410 (56%), Gaps = 25/410 (6%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
F +FR QL+ I ++G++ F +MPTGGGK +CYQ+PAL G LV+ PLI+LME+
Sbjct: 87 FKLQKFRPLQLETINVTMAGKEVFLVMPTGGGKGLCYQLPALCSDGFTLVICPLISLMED 146
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-TPGFMSKLKK 152
Q++ LK+ GI+ L+++ + + ++ ++ + L+L+YVTPE A + FMS+L+K
Sbjct: 147 QLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK 206
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
+ +A+DE HC S WGHDFRP Y+ L L+ P+ ++ LTATA V D
Sbjct: 207 AYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQ 266
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYK-----DLLDDAYADLCSVLKANGDTCAIVYCLE 267
+ LC++ +SFNRPNL+YEVR K D ++D + K I+YC
Sbjct: 267 KILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQS---GIIYCFS 323
Query: 268 RTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV 327
+ ++++ L GI AYHA L + +++V W ++ QVVVATVAFGMGID+ DV
Sbjct: 324 QKDSEQVTVSLRNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDV 383
Query: 328 RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFST 387
R V H ++ KSME +YQESGRAGRD + + +LYYG D R+ S
Sbjct: 384 RFVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRI------------SSMVV 431
Query: 388 RERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDAC 436
E ++ + +MV YC+ S CRR + + F E C CD C
Sbjct: 432 MENVGQQKL---YEMVSYCQNISKCRRLLMAQHFDEVWNSEACNKMCDNC 478
>sp|O34748|RECQ_BACSU Probable ATP-dependent DNA helicase RecQ OS=Bacillus subtilis
(strain 168) GN=recQ PE=3 SV=1
Length = 591
Score = 297 bits (760), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 168/414 (40%), Positives = 237/414 (57%), Gaps = 33/414 (7%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87
LL +FG+ +FR Q +AI+ V R + C+MPTGGGKS+CYQIPAL G +V+SPL
Sbjct: 8 LLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPL 67
Query: 88 IALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP-SLRLLYVTPELTATPGF 146
I+LM++QV L+E GI +++STQ+ Q +IYE L+ K + +L Y+TPE + F
Sbjct: 68 ISLMKDQVDALEEAGINAAYINSTQSNQ---EIYERLNGLKEGAYKLFYITPERLTSIEF 124
Query: 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVP-ILALTATAAP 205
+ L+ I + LVAIDEAHCIS WGHDFRPSYR + L L D P I+ALTATA P
Sbjct: 125 IRILQGID----VPLVAIDEAHCISQWGHDFRPSYRNIEILFRELHDKPVIMALTATATP 180
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKANGDTCAI 262
+V D+ + L +Q + + F+R NL ++V KD D Y ++ N I
Sbjct: 181 EVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEY------VQNNRHEAGI 234
Query: 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
VY R D + L + YH GL D R + +++ QV+VAT AFGMGI
Sbjct: 235 VYTATRKEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGI 294
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ ++R V H IPK ME++YQE+GRAGRD L S+ +L + D F++ +++ +
Sbjct: 295 DKSNIRFVLHAQIPKDMESYYQEAGRAGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEK 354
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDAC 436
Q K+ + QMVDYC C ++ IL FGE+ P ++C C
Sbjct: 355 Q---------KQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEP-----DACGQC 394
>sp|O93530|WRN_XENLA Werner syndrome ATP-dependent helicase homolog OS=Xenopus laevis
GN=wrn PE=2 SV=1
Length = 1436
Score = 289 bits (739), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 165/423 (39%), Positives = 242/423 (57%), Gaps = 29/423 (6%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ +FGH+ F+ Q + +VL RD +M TG GKS+CYQ + GI +V+
Sbjct: 478 ISCLKTYFGHSSFKPVQWKVVHSVLRERRDNLVVMATGYGKSLCYQFAPVYTSGIGIVIC 537
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LME+QV+ L+ I+ FL S Q+ V +D+ GK +R++Y+TPE +
Sbjct: 538 PLISLMEDQVLQLEMSNISSCFLGSAQSKNV----LQDVKDGK--MRVIYMTPEFCSRG- 590
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+S L+ + +R + L+AIDEAHCIS WGHDFR +YR L SL+ LP+VPI+ALTATA+P
Sbjct: 591 -ISLLQDLDNRYGITLIAIDEAHCISEWGHDFRSAYRSLGSLKRMLPNVPIVALTATASP 649
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLCSVLKANG---DTC 260
+++D+ +SL L NP V +SF+RPNL+ +V K ++ D L + +G +
Sbjct: 650 SIREDITKSLNLHNPQVTCTSFDRPNLYLDVARKTTNISIDLRQFLIKKQQGSGWEFEGA 709
Query: 261 AIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320
IVYC R T ++++A L GI+C YHAG+ K R V ++ VVATVAFGM
Sbjct: 710 TIVYCPTRKTSEQVTAELIKLGIACGTYHAGMGIKQRREVHHRFMRDEIHCVVATVAFGM 769
Query: 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380
GI++ D+R V H+ PK ME++YQE GRAGRD LPS + D +L + +K
Sbjct: 770 GINKPDIRKVIHYGAPKEMESYYQEIGRAGRDGLPSCCHALWAQADMNFNRHMLGEIPNK 829
Query: 381 NSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ------IPVSLCKNSCD 434
+ + + ++M Y S CRRK IL F ++ + + CD
Sbjct: 830 GFREYKLKM---------LTKMEKYLNSSTCRRKIILSHFEDKQLRKASSGIMGTEKCCD 880
Query: 435 ACK 437
CK
Sbjct: 881 NCK 883
>sp|Q14191|WRN_HUMAN Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1
SV=2
Length = 1432
Score = 278 bits (711), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 162/426 (38%), Positives = 242/426 (56%), Gaps = 31/426 (7%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVL 82
E V L+ +FGH+ F+ Q I +VL R D +M TG GKS+C+Q P + I L
Sbjct: 534 EEQVTCLKMYFGHSSFKPVQWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGKIGL 593
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
V+SPLI+LME+QV+ LK I FL S Q+ V T D+ GK R++YVTPE +
Sbjct: 594 VISPLISLMEDQVLQLKMSNIPACFLGSAQSENVLT----DIKLGK--YRIVYVTPEYCS 647
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTAT 202
G M L+++ + + L+A+DEAHCIS WGHDFR S+RKL SL+ LP VPI+ALTAT
Sbjct: 648 --GNMGLLQQLEADIGITLIAVDEAHCISEWGHDFRDSFRKLGSLKTALPMVPIVALTAT 705
Query: 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLC---SVLKANG 257
A+ +++D++ L L+NP + + F+RPNL+ EVR K ++L D L S + G
Sbjct: 706 ASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRRKTGNILQDLQPFLVKTSSHWEFEG 765
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
T I+YC R +++ L +SC YHAG++ R + ++ Q V+AT+A
Sbjct: 766 PT--IIYCPSRKMTQQVTGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQCVIATIA 823
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGI++ D+R V H+ PK ME++YQE GRAGRD L S + + D +L++
Sbjct: 824 FGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEI 883
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ------IPVSLCKN 431
+++ + + + ++M Y S CRR+ IL F ++ + + +
Sbjct: 884 RNEKFRLYKLKM---------MAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEK 934
Query: 432 SCDACK 437
CD C+
Sbjct: 935 CCDNCR 940
>sp|Q19546|WRN_CAEEL Probable Werner syndrome ATP-dependent helicase homolog 1
OS=Caenorhabditis elegans GN=wrn-1 PE=3 SV=2
Length = 1056
Score = 272 bits (696), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 158/425 (37%), Positives = 240/425 (56%), Gaps = 30/425 (7%)
Query: 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVL 82
+EAL L FGH FR+KQ D ++ VL G+D F LM TG GKS+CYQ+P+L + +
Sbjct: 213 QEAL-NALNEFFGHKGFREKQWDVVRNVLGGKDQFVLMSTGYGKSVCYQLPSLLLNSMTV 271
Query: 83 VVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA 142
VVSPLI+LM +QV L KGI L T Q++ ++ + + +R +Y++PE+
Sbjct: 272 VVSPLISLMNDQVTTLVSKGIDAVKLDGHST-QIE---WDQVANNMHRIRFIYMSPEMVT 327
Query: 143 TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY--LPDVPILALT 200
+ + L R ++L+AIDEAHC+S WGHDFR SYR L+ +RN L ++P++ALT
Sbjct: 328 SQKGLELLTS--CRKHISLLAIDEAHCVSQWGHDFRNSYRHLAEIRNRSDLCNIPMIALT 385
Query: 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-KDLLDDA--YADLCSVLKANG 257
ATA +V+ DV+ +L L+ PL+ +SF+R NL+ V KD+ +D + V +
Sbjct: 386 ATATVRVRDDVIANLRLRKPLITTTSFDRKNLYISVHSSKDMAEDLGLFMKTDEVKGRHF 445
Query: 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317
I+YC + D+++ L G+ A YHAGL R D++ + +VATVA
Sbjct: 446 GGPTIIYCQTKQMVDDVNCVLRRIGVRSAHYHAGLTKNQREKAHTDFMRDKITTIVATVA 505
Query: 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377
FGMGID+ DVR V H+ P ++E++YQE GRAGRD PS +++ D ++F L +
Sbjct: 506 FGMGIDKPDVRNVIHYGCPNNIESYYQEIGRAGRDGSPSICRVFWAPKDLNTIKFKLRNS 565
Query: 378 QSKNSQSFSTRERSSKKSISDFSQMVDYCE----GSGCRRKKILESFGEQI--PVSLCKN 431
Q K ++ + + + M+ E GCRR ++L+ F P ++ +
Sbjct: 566 QQK------------EEVVENLTMMLRQLELVLTTVGCRRYQLLKHFDPSYAKPPTMQAD 613
Query: 432 SCDAC 436
CD C
Sbjct: 614 CCDRC 618
>sp|Q5UPX0|YR290_MIMIV Putative ATP-dependent RNA helicase R290 OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R290 PE=3 SV=1
Length = 548
Score = 268 bits (684), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/448 (34%), Positives = 252/448 (56%), Gaps = 36/448 (8%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
+G+ FR +Q + I V++G D ++ T GKS+C+QIPAL +++SPLI+LME+
Sbjct: 25 YGYDNFRPRQYEIINKVINGEDVCAILMTSAGKSLCFQIPALYLDKPAIIISPLISLMED 84
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-LTATPGFMSKLKK 152
Q + L++ GI+ +S ++ K ++ +D+ K + +YV+PE + + KL+
Sbjct: 85 QRLILEKLGISSCCYNSN--VENKAQMRKDIMQFK--YKFIYVSPESVVHLKDLIVKLED 140
Query: 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212
++L+AIDEAHCIS++G DFR +YR+++ + LP+VPILALTATA V KD+
Sbjct: 141 FQG---ISLIAIDEAHCISAYGFDFRTAYREITFFKEILPNVPILALTATATNIVAKDIC 197
Query: 213 ESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272
+ L L+ +K+SF+RPNL+ EVR K + D+ ++ + I+YCL +
Sbjct: 198 KVLQLKTNEPIKASFDRPNLYLEVRTKS--KNPANDIVPIINKYPNQSVIIYCLTKKETQ 255
Query: 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH 332
+++ L+ + C YHAGL+++ ++ ++I+++ ++VVAT+AFGMGI++ DVR+V H
Sbjct: 256 KIADILTVHKVVCGIYHAGLSNEHKTKTHTNFINNKIKIVVATIAFGMGINKPDVRVVIH 315
Query: 333 FNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSS 392
+ PK++E +YQE GRAGRD S +Y D +S+N + N Q
Sbjct: 316 YGAPKNIEGYYQEIGRAGRDGEKSYCYAFYNFQDFMIQRRFISQNNNPNYQ--------- 366
Query: 393 KKSISDFSQMVDYCEGSGCRRKKILESFGEQI--PVSLCKNSCDACKHPNLL-------- 442
K ++ QM Y CRRK +LE F E+ C N C H N++
Sbjct: 367 KTQLALLEQMKKYVTLRTCRRKILLEYFDEETKEKCDFCDNCCGV--HKNIVNENVTSKQ 424
Query: 443 -----AKYLGELTSAVLQKNHFSQIFIS 465
AK + EL ++ +N ++I+
Sbjct: 425 NVQSEAKLIIELIESIPNRNFGVNMYIN 452
>sp|O09053|WRN_MOUSE Werner syndrome ATP-dependent helicase homolog OS=Mus musculus
GN=Wrn PE=1 SV=3
Length = 1401
Score = 263 bits (673), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 156/424 (36%), Positives = 234/424 (55%), Gaps = 32/424 (7%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
+ L+ +FGH+ F+ Q I +VL R D +M TG GKS+C+Q P + I +V+S
Sbjct: 501 INCLKTYFGHSSFKPVQWKVIHSVLEERRDNVVVMATGYGKSLCFQYPPVYTGKIGIVIS 560
Query: 86 PLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145
PLI+LME+QV+ L+ + L S Q+ I D+ GK R++Y+TPE + G
Sbjct: 561 PLISLMEDQVLQLELSNVPACLLGSAQS----KNILGDVKLGK--YRVIYITPEFCS--G 612
Query: 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205
+ L+++ S + L+A+DEAHCIS WGHDFR S+R L SL+ LP VP++AL+ATA+
Sbjct: 613 NLDLLQQLDSSIGITLIAVDEAHCISEWGHDFRSSFRMLGSLKTALPLVPVIALSATASS 672
Query: 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYK--DLLDDAYADLC----SVLKANGDT 259
+++D++ L L++P + + F+RPNL+ EV K ++L D L S + G T
Sbjct: 673 SIREDIISCLNLKDPQITCTGFDRPNLYLEVGRKTGNILQDLKPFLVRKASSAWEFEGPT 732
Query: 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319
I+YC R ++++A L ++C YHAG+ R V ++ Q VVATVAFG
Sbjct: 733 --IIYCPSRKMTEQVTAELGKLNLACRTYHAGMKISERKDVHHRFLRDEIQCVVATVAFG 790
Query: 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379
MGI++ D+R V H+ PK ME++YQE GRAGRD L S L + D N S
Sbjct: 791 MGINKADIRKVIHYGAPKEMESYYQEIGRAGRDGLQSSCHLLWAPADF---------NTS 841
Query: 380 KNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ------IPVSLCKNSC 433
+N E+ + +M Y S CRR+ IL F ++ + + + C
Sbjct: 842 RNLLIEIHDEKFRLYKLKMMVKMEKYLHSSQCRRRIILSHFEDKCLQKASLDIMGTEKCC 901
Query: 434 DACK 437
D C+
Sbjct: 902 DNCR 905
>sp|P50729|RECS_BACSU Probable ATP-dependent DNA helicase RecS OS=Bacillus subtilis
(strain 168) GN=recS PE=3 SV=1
Length = 496
Score = 243 bits (621), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 153/400 (38%), Positives = 217/400 (54%), Gaps = 26/400 (6%)
Query: 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85
L + L FG F+ Q D I+++LSG+D ++PTGGGKS+CYQ+P G+VL+VS
Sbjct: 4 LQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVS 63
Query: 86 PLIALMENQVIGLKEKGIA-GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
PL++LME+QV LK +G L+S Q + + E + K LY++PE +P
Sbjct: 64 PLLSLMEDQVQQLKARGEKRAAALNSMLNRQERQFVLEHIHRYK----FLYLSPEALQSP 119
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ KLK + ++L IDEAHCIS WGHDFRP Y KL LR L P+LALTATA
Sbjct: 120 YVLEKLKSVP----ISLFVIDEAHCISEWGHDFRPDYSKLGQLRKKLGHPPVLALTATAT 175
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDA-YADLCSVLKANGDTCAIV 263
+ +DVM L LQ+ + +S NRPN+ +R ++ D A D L N IV
Sbjct: 176 KETLQDVMNLLELQHAVRHLNSVNRPNI--ALRVENAADTAEKIDRVIQLVENLQGPGIV 233
Query: 264 YCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322
YC R EL+ + + S A YH GL R + +I ++ V+ T AFGMG+
Sbjct: 234 YCPTRKWAKELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGV 293
Query: 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNS 382
D+ D+R V HF++P++ EAF QE GRAGRD PS S+L D E I+
Sbjct: 294 DKPDIRYVIHFHLPQTAEAFMQEIGRAGRDGKPSVSILLRAPGDFELQEQIIQM------ 347
Query: 383 QSFSTRERSSKKSISDFSQMVDYCEGSGCRR-KKILESFG 421
E + + I+D ++++ E RR + +L +G
Sbjct: 348 ------ESVTAEEIADVIRVLEKTEERDERRLRDVLLQYG 381
>sp|Q0WVW7|RQL5_ARATH ATP-dependent DNA helicase Q-like 5 OS=Arabidopsis thaliana
GN=RECQL5 PE=2 SV=2
Length = 911
Score = 223 bits (568), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 201/354 (56%), Gaps = 27/354 (7%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLV 83
E L KLL +G+ FRD QL AI+ +L G ++PTG GKS+CYQIPA+ PGI LV
Sbjct: 255 ENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITLV 314
Query: 84 VSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT 143
VSPL++LM +Q+ L I G LSS+Q + T+ L G +++L+V+PE
Sbjct: 315 VSPLVSLMIDQLKHLPSI-IKGGLLSSSQRPEEATETLRKLKEG--IIKVLFVSPERLLN 371
Query: 144 PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL--SSLRNYLPDVPILALTA 201
F+S + S ++LV +DEAHC+S W H+FRPSY +L S L + L ILA+TA
Sbjct: 372 VEFLSMFRMSLS---VSLVVVDEAHCVSEWSHNFRPSYMRLKASMLFSELKAECILAMTA 428
Query: 202 TAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV------RYKDLL----DDAYADLCS 251
TA + VM SL + + +++ S R N V R KDLL Y ++ S
Sbjct: 429 TATTMTLQAVMSSLEIPSTNLIQKSQLRDNFELSVSLSGANRMKDLLILMESPPYKEIRS 488
Query: 252 VLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311
+ IVYC + D +S YL I+ YH+GL K R + + + S++ +V
Sbjct: 489 I---------IVYCKFQYETDMISKYLRDNNINAKGYHSGLPAKDRVRIQESFCSNKIRV 539
Query: 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365
VVATVAFGMG+D+ DV V HF++P SME + QE GRAGRD S L+Y D
Sbjct: 540 VVATVAFGMGLDKGDVGAVIHFSVPGSMEEYVQEIGRAGRDGRLSYCHLFYDND 593
>sp|P73421|RECQ_SYNY3 ATP-dependent DNA helicase RecQ OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recQ PE=3 SV=1
Length = 478
Score = 196 bits (497), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 125/369 (33%), Positives = 197/369 (53%), Gaps = 21/369 (5%)
Query: 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIV 81
++++L + LR +G+ FR Q + I +L+ RDC ++PTGGGKS+C+Q+PAL G+
Sbjct: 3 DRQSLEEALRRIWGYDHFRYPQGEVIDCLLARRDCLVVLPTGGGKSICFQLPALLGEGLT 62
Query: 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT 141
LVVSPL+ALME+QV L+ + + L S + + G+ L+LLY++PE
Sbjct: 63 LVVSPLVALMEDQVQSLRRQNLPAACLHS--QLSRPERKQVLYQLGQQQLKLLYLSPETL 120
Query: 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVPIL 197
+ + L++ + L + +DEAHC+ WG FRP+YR+L +LR L +P+
Sbjct: 121 LSEPVWNLLRQPQVK--LQGIMLDEAHCLVQWGDSFRPAYRRLGALRRGLGRDKGQIPLA 178
Query: 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYA---DLCSVLK 254
A TATA + Q ++E L L++P + S +RP L +V+ ++ Y L L
Sbjct: 179 AFTATADRQQQNLIVEGLNLRSPECFQVSPHRPQLHLKVK---MVLSEYCRRQQLRRFLL 235
Query: 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314
+ ++Y RT L+ +L G AYH GL R + W++ + VV
Sbjct: 236 KHLQESGLIYVRTRTMAINLAQWLQERGFDSEAYHGGLGPHQRRQLEQKWLTGQISSVVC 295
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL-------YYGMDDR 367
T AFG+GID+ D R V H+ P + + QE GRAGRD P++ L + DR
Sbjct: 296 TNAFGLGIDKPDTRWVLHYQAPLMLMDYLQEVGRAGRDLQPAECLTLVSEPTGWLDSGDR 355
Query: 368 RRMEFILSK 376
+ ++ LS+
Sbjct: 356 QLRQYFLSQ 364
>sp|O94761|RECQ4_HUMAN ATP-dependent DNA helicase Q4 OS=Homo sapiens GN=RECQL4 PE=1 SV=1
Length = 1208
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 171/348 (49%), Gaps = 26/348 (7%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIA 89
GH FR Q A+ +LSG ++PTG GKS+CYQ+PAL P + LVVSPL++
Sbjct: 476 LGHQAFRPGQERAVMRILSGISTLLVLPTGAGKSLCYQLPALLYSRRSPCLTLVVSPLLS 535
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149
LM++QV GL + + S T + + + + + + + + +L +TPE G +
Sbjct: 536 LMDDQVSGLP-PCLKAACIHSGMTRKQRESVLQKIRAAQ--VHVLMLTPEALVGAGGLPP 592
Query: 150 LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY-RKLSSLRNYLPDVPILALTATAAPKVQ 208
++ + IDEAHC+S W H+FRP Y R LR + L LTATA +
Sbjct: 593 AAQLPP---VAFACIDEAHCLSQWSHNFRPCYLRVCKVLRERMGVHCFLGLTATATRRTA 649
Query: 209 KDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE 267
DV + L + L P NL V D A L + I+YC
Sbjct: 650 SDVAQHLAVAEEPDLHGPAPVPTNLHLSVSMDRDTDQALLTLLQGKRFQNLDSIIIYCNR 709
Query: 268 RTTCDELSAYL----------SAGG----ISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313
R + ++A L +GG + AYHAG+ + R V ++ + +VVV
Sbjct: 710 REDTERIAALLRTCLHAAWVPGSGGRAPKTTAEAYHAGMCSRERRRVQRAFMQGQLRVVV 769
Query: 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
ATVAFGMG+DR DVR V H +P S E++ Q GRAGRD P+ L+
Sbjct: 770 ATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAVGRAGRDGQPAHCHLF 817
>sp|Q75NR7|RECQ4_MOUSE ATP-dependent DNA helicase Q4 OS=Mus musculus GN=Recql4 PE=2 SV=2
Length = 1216
Score = 172 bits (437), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 121/353 (34%), Positives = 172/353 (48%), Gaps = 31/353 (8%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIA 89
G+ FR Q AI +LSG ++PTG GKS+CYQ+PAL P + LVVSPL++
Sbjct: 493 LGYRAFRPGQERAIMRILSGISTLLVLPTGAGKSLCYQLPALLYAQRSPCLTLVVSPLLS 552
Query: 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-----P 144
LM++QV L + L S T + + + + + + + + +L V+PE P
Sbjct: 553 LMDDQVSDLP-SCLKAACLHSGMTKKQRESVLKKVRAAQ--VHVLIVSPEALVGCGARGP 609
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY-RKLSSLRNYLPDVPILALTATA 203
G + + ++ + IDE HC+S W H+FRP Y R LR ++ L LTATA
Sbjct: 610 GSLPQAAQLPP---IAFACIDEVHCLSQWSHNFRPCYLRVCKVLREHMGVRCFLGLTATA 666
Query: 204 APKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDLLDDAYADLCSVLKANGDTCAI 262
+DV + L + L S N P NL V D A L + I
Sbjct: 667 TRSTARDVAQHLGIAGEFELSGSANIPANLHLSVSMDRDSDQALVTLLQGDRFRTLDSVI 726
Query: 263 VYC----LERTTCDELSAYLSAGGIS----CA------AYHAGLNDKARSSVLDDWISSR 308
+YC ++ L LS G S C AYHAG++ + R V ++
Sbjct: 727 IYCTRERIQNGWLALLRTCLSMVGDSRPRGCGPEAIAEAYHAGMSSQERRRVQQAFMRGH 786
Query: 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361
++VVATVAFGMG+DR DVR V H +P S E++ Q GRAGRD P+ L+
Sbjct: 787 LRMVVATVAFGMGLDRPDVRAVLHLGLPPSFESYVQAIGRAGRDGKPAHCHLF 839
>sp|Q9FT69|RQSIM_ARATH ATP-dependent DNA helicase Q-like SIM OS=Arabidopsis thaliana
GN=RECQSIM PE=2 SV=1
Length = 858
Score = 160 bits (404), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/220 (41%), Positives = 130/220 (59%), Gaps = 17/220 (7%)
Query: 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88
+LR FG + R Q +A+ ++ +DC L TG GKS+C+QIPAL +V+V+SPLI
Sbjct: 159 ILRNRFGISSLRSFQREALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLI 218
Query: 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148
+LM +Q + L ++ FL S Q+ I E G +++YV PE +
Sbjct: 219 SLMHDQCLKLSRHKVSACFLGSG---QLDNCIEEKAMQGM--YQIIYVCPETVVR--LIK 271
Query: 149 KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR-NYLP--------DVPILAL 199
L+K+ + L AIDEAHC+S WGHDFRP YRKLS LR N+ DVPI+AL
Sbjct: 272 PLQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMAL 331
Query: 200 TATAAPKVQKDVMESLCL-QNPLVLKSSFNRPNLFYEVRY 238
TATA VQ+D++ESL L + ++ +SF RPNL + V++
Sbjct: 332 TATATVNVQEDILESLHLSKETKIVLTSFFRPNLQFSVKH 371
Score = 106 bits (264), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 98/176 (55%), Gaps = 14/176 (7%)
Query: 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321
I+Y R ++ YL G+ AAY+A L K V D+ ++ QVVVAT+AFGMG
Sbjct: 501 IIYVPTRKESVNIAKYLCGVGLKAAAYNASLPKKHLRQVHQDFHDNKLQVVVATIAFGMG 560
Query: 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381
ID+K+VR + H+ +S+EA+YQE+GRAGRD ++ +LY D R +L +SK
Sbjct: 561 IDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAECVLYA---DLSRAPTLLPSRRSKE 617
Query: 382 SQSFSTRERSSKKSISD-FSQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDAC 436
+ + K +SD F ++ S CR K ++E FGE+ C NSCD C
Sbjct: 618 ------QTEQAYKMLSDCFRYGMN---TSQCRAKILVEYFGEEFSSKKC-NSCDVC 663
>sp|Q1RKN3|TLH2_SCHPO ATP-dependent DNA helicase tlh2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh2 PE=2 SV=1
Length = 1919
Score = 113 bits (282), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 171/348 (49%), Gaps = 32/348 (9%)
Query: 37 AQFRD-KQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK-----PG-----IVLVV 84
A+FR KQ ++ L R + ++PTGGGKS+ + IPAL + PG + LV+
Sbjct: 1188 AKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVL 1247
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
P+++L ++ ++ + EKG+ L + + L++ P L +L T E T
Sbjct: 1248 VPMMSLRQDMMLRVNEKGL----LVCSGNWTAFKDVRLTLETQLPDLFIL--TYESALTN 1301
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ + + + G L V IDEAH + + G +R + + S L P+ L+AT
Sbjct: 1302 SGLRFFESLATLGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLY--APLHLLSATFP 1358
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN----GDTC 260
+++ ++ C ++ ++S R N+FY + D + DL +++K GD
Sbjct: 1359 RQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDN-TEFLLDLRTLMKRTKVFEGDGR 1417
Query: 261 AIVYCLERTTCDELSAYLSAGGI----SCAAYHAGLNDKARSSVLDDW--ISSRKQVVVA 314
AI++C + + + L + Y ++D+ R D + + + ++++A
Sbjct: 1418 AIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIA 1477
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
T AFG+GI+ VRLV H+ +P S + QE+GRAGRD + + L+Y
Sbjct: 1478 TKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFY 1525
>sp|Q5EAK4|TLH1_SCHPO ATP-dependent DNA helicase tlh1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=tlh1 PE=2 SV=1
Length = 2100
Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 171/348 (49%), Gaps = 32/348 (9%)
Query: 37 AQFRD-KQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK-----PG-----IVLVV 84
A+FR KQ ++ L R + ++PTGGGKS+ + IPAL + PG + LV+
Sbjct: 1369 AKFRSLKQFQSVYFSLLNRMNLITVLPTGGGKSLSFLIPALIEKKRQTPGKVMNMVTLVL 1428
Query: 85 SPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP 144
P+++L ++ ++ + EKG+ L + + L++ P L +L T E T
Sbjct: 1429 VPMMSLRQDMMLRVNEKGL----LVCSGNWTAFKDVRLTLETQLPDLFIL--TYESALTN 1482
Query: 145 GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204
+ + + + G L V IDEAH + + G +R + + S L P+ L+AT
Sbjct: 1483 SGLRFFESLATLGRLARVVIDEAHLLLTSG-AWRTALSRASRLSGLYA--PLHLLSATFP 1539
Query: 205 PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN----GDTC 260
+++ ++ C ++ ++S R N+FY + D + DL +++K GD
Sbjct: 1540 RQLEMVARQTFCTNFYVLRETSTARENIFYFLHPYDN-TEFLLDLRTLMKRTKVFEGDGR 1598
Query: 261 AIVYCLERTTCDELSAYLSAGGI----SCAAYHAGLNDKARSSVLDDW--ISSRKQVVVA 314
AI++C + + + L + Y ++D+ R D + + + ++++A
Sbjct: 1599 AIIFCRTKKDVEYIHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIA 1658
Query: 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362
T AFG+GI+ VRLV H+ +P S + QE+GRAGRD + + L+Y
Sbjct: 1659 TKAFGLGINYMGVRLVVHYGLPASSMDYVQETGRAGRDGKYAIAALFY 1706
>sp|Q8SRB2|DBP2_ENCCU ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=DBP2 PE=3 SV=1
Length = 495
Score = 94.7 bits (234), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/323 (27%), Positives = 142/323 (43%), Gaps = 42/323 (13%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALAKPG-----------IVLVVSPLIALMENQVIGLK 99
LSGRD + TG GK++ + +PAL IVLV++P L+ ++
Sbjct: 122 LSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVLVLAPTRELV------MQ 175
Query: 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRG- 157
K + EF T +Y S +P +R L+ E+ ATPG +L +H +G
Sbjct: 176 IKKVVDEFCGMFNLRS--TAVYGGASS-QPQIRALHEGAEVVIATPG---RLIDLHDQGH 229
Query: 158 ----LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213
+ + +DEA + G F P RK+ N + L +AT P+ + + E
Sbjct: 230 APLSRVTFLVLDEADRMLDMG--FEPQLRKIIPKTN--ANRQTLMWSATW-PREVRGLAE 284
Query: 214 SLCLQNPLVLKSSFNRPNLFYEVRYKDLLD-----DAYADLCSVLKANGDTCAIVYCLER 268
S + ++ L + K +++ + L VL IV+C +
Sbjct: 285 SYMNE---YIQVVVGNEELKTNSKIKQIVEVCSGREKEDKLIGVLDNFKGDKVIVFCNMK 341
Query: 269 TTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR 328
TCD+L L+ G AA H + R VLDD+ S R+ +++AT G G+D DV+
Sbjct: 342 RTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGRRPILIATEVAGRGLDVNDVK 401
Query: 329 LVCHFNIPKSMEAFYQESGRAGR 351
LV +F+ P S E + GR R
Sbjct: 402 LVINFDFPGSCEDYVHRIGRTAR 424
>sp|Q755N4|DBP2_ASHGO ATP-dependent RNA helicase DBP2 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DBP2
PE=3 SV=2
Length = 557
Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/315 (25%), Positives = 139/315 (44%), Gaps = 23/315 (7%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP-----LIALMENQVIGLKEKGIAG 105
LSGRD + TG GK++ Y +P + ++SP ++ L + + ++ +
Sbjct: 149 LSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPVVLVLAPTRELAVQIQKECS 208
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL--LNLVA 163
+F S++ T +Y + + L L ATPG + + +I L + +
Sbjct: 209 KFGRSSRIRN--TCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLV 266
Query: 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP--- 220
+DEA + G F P RK+ + PD L +AT +VQ+ + L +P
Sbjct: 267 LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVQQ--LARDYLHDPIQV 320
Query: 221 ----LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSA 276
L L +S L V D D L + + D+ I++ + TCDE+++
Sbjct: 321 NIGSLELAASHTITQLVEVVSDFDKRDRLVKHL-EIASKDKDSKIIIFASTKRTCDEITS 379
Query: 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336
YL G A H + R VL+++ + R ++VAT GID K + V ++++P
Sbjct: 380 YLRQDGWPALAIHGDKQQQERDWVLNEFRTGRSPIMVATDVAARGIDVKGINFVINYDMP 439
Query: 337 KSMEAFYQESGRAGR 351
++E + GR GR
Sbjct: 440 GNIEDYVHRIGRTGR 454
>sp|Q6FLF3|DBP2_CANGA ATP-dependent RNA helicase DBP2 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP2 PE=3 SV=1
Length = 544
Score = 85.1 bits (209), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 147/331 (44%), Gaps = 23/331 (6%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP-----LIALMENQVIGLKEKGIAG 105
LSGRD + TG GK++ Y +P + ++SP ++ L + + ++ +
Sbjct: 145 LSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECS 204
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL--LNLVA 163
+F S++ T +Y + G+ L+ + ATPG + + + L + +
Sbjct: 205 KFGKSSRIRN--TCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLV 262
Query: 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP--- 220
+DEA + G F P RK+ + PD L +AT +VQ+ + L +P
Sbjct: 263 LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVQQ--LARDYLNDPIQV 316
Query: 221 ----LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSA 276
L L +S N L EV + D + ++ +++ + TCDE+++
Sbjct: 317 QIGSLELAASHNITQLV-EVVSEFEKRDRLVKHLDTASQDKESKILIFASTKRTCDEITS 375
Query: 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336
YL G A H + + R VL+++ + ++VAT GID K + V ++++P
Sbjct: 376 YLRQDGWPALAIHGDKDQRERDWVLNEFRTGNSPIMVATDVAARGIDVKGINFVVNYDMP 435
Query: 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367
++E + GR GR ++ ++ D++
Sbjct: 436 GNIEDYVHRIGRTGRAGATGTAISFFTEDNK 466
>sp|Q6CIV2|DBP2_KLULA ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DBP2 PE=3 SV=1
Length = 554
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/314 (24%), Positives = 139/314 (44%), Gaps = 21/314 (6%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP-----LIALMENQVIGLKEKGIAG 105
LSGRD + TG GK++ Y +P + ++SP ++ L + + ++ +
Sbjct: 148 LSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECS 207
Query: 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL--LNLVA 163
+F +S++ T +Y + + L L ATPG + + +I L + +
Sbjct: 208 KFGASSRIR--NTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLV 265
Query: 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL 223
+DEA + G F P RK+ + PD L +AT +V++ + S L +P+ +
Sbjct: 266 LDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVKQ--LASDYLHDPIQV 319
Query: 224 K------SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAY 277
+ S+ + EV D A + D+ I++ + TCDE+++Y
Sbjct: 320 QIGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSY 379
Query: 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337
L G A H R VL ++ S R ++VAT GID K + V ++++P
Sbjct: 380 LRTEGWPALAIHGDKAQNERDWVLAEFRSGRSPIMVATDVAARGIDVKGINYVINYDMPG 439
Query: 338 SMEAFYQESGRAGR 351
++E + GR GR
Sbjct: 440 NIEDYVHRIGRTGR 453
>sp|Q2HAD8|PRP5_CHAGB Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Chaetomium
globosum (strain ATCC 6205 / CBS 148.51 / DSM 1962 /
NBRC 6347 / NRRL 1970) GN=PRP5 PE=3 SV=1
Length = 1064
Score = 84.3 bits (207), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 85/354 (24%), Positives = 149/354 (42%), Gaps = 64/354 (18%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
G+ + Q+ A+ ++SGRD + TG GK+M + +P L + +
Sbjct: 447 LGYEKPTSIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRH------------IKDQ 494
Query: 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE-------------- 139
+ + IA L T T ++ T+IY DL +L+L +
Sbjct: 495 DPVTGDDGAIA---LIMTPTRELCTQIYSDLLPFAKALKLRAIAAYGGNAIKDQIAELKR 551
Query: 140 ----LTATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNY 190
+ ATPG M L +S + NL + +DEA + G F P K+ N
Sbjct: 552 GAEIIVATPGRMIDLLAANSGRVTNLKRATYLVLDEADRMFDMG--FEPQVMKI--FNNV 607
Query: 191 LPDVPILALTATAAPKVQKDVMESLCLQNPLVLK---SSFNRPNL--FYE--------VR 237
PD + +AT P++ D + L+ P+ ++ S P + E VR
Sbjct: 608 RPDRQTILFSATM-PRII-DALTKKVLREPVEIQVGGRSVVAPEITQIVEILDEGKKFVR 665
Query: 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297
+LL + YAD + D A+++ + D+L + G C + H G + + R
Sbjct: 666 LLELLGELYAD-------DDDVRALIFVERQEKADDLLREVLRRGYGCMSIHGGKDQEDR 718
Query: 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+S + D+ +++AT G+D K ++LV +++ P +E + +GR GR
Sbjct: 719 NSTISDFKKGVCPIMIATSVAARGLDVKQLKLVVNYDAPNHLEDYVHRAGRTGR 772
>sp|A5E058|PRP5_LODEL Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces
elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 /
NBRC 1676 / NRRL YB-4239) GN=PRP5 PE=3 SV=1
Length = 994
Score = 83.6 bits (205), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 91/368 (24%), Positives = 158/368 (42%), Gaps = 64/368 (17%)
Query: 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-------- 75
E+++ +++ G A+ Q AI VLSGRD + TG GK++ Y +P +
Sbjct: 396 ESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQDQLF 455
Query: 76 AKPG---IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK-------TKIYEDLD 125
KPG I LV+SP L I E L + TM +K + I +
Sbjct: 456 PKPGEGPIGLVLSPTRELALQ---------IEKEILKFSSTMDLKVCCCYGGSNIENQIS 506
Query: 126 SGKPSLRLLYVTPE-----LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180
K + ++ TP L A G ++ L++ V +DEA + G F P
Sbjct: 507 ELKRGVNVIVATPGRLIDLLAANGGRITTLRRT------TFVVLDEADRMFDMG--FEPQ 558
Query: 181 YRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL--------VLKSSFNRPN 231
+K+ + +R PD + +AT K+++ + L NP+ V+ S ++
Sbjct: 559 IQKIFTQIR---PDKQTVLFSATFPRKLEQ--LAKKVLHNPIEIIVGGVSVVASEISQEI 613
Query: 232 LFYE-----VRYK-DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285
+ +E + +K L+D + + K G +V+ ++T D+L + L I C
Sbjct: 614 ILFEDTDQLMNHKIQKLEDILSRFFDLGKNTGK--VLVFVEKQTDADKLVSVLLKKAIPC 671
Query: 286 AAYHAGLNDKARSSVLDDWISSRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343
A H G + R + ++ + V++AT G+D +++ LV +F P +E +
Sbjct: 672 IAIHGGKDQIDRKHAIREFSDDQSGINVLIATSIAARGLDVRNLDLVVNFEPPSHLEDYV 731
Query: 344 QESGRAGR 351
GR GR
Sbjct: 732 HRVGRTGR 739
>sp|Q7SH33|PRP5_NEUCR Pre-mRNA-processing ATP-dependent RNA helicase prp-5 OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=prp-5 PE=3 SV=1
Length = 1194
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 84/345 (24%), Positives = 145/345 (42%), Gaps = 64/345 (18%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102
Q+ A+ ++SGRD + TG GK+M + +P L + + + +
Sbjct: 588 QMQALPVIMSGRDVIGVAKTGSGKTMAFALPMLRH------------VKDQDPVTGDDGA 635
Query: 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE------------------LTATP 144
IA L T T ++ T+IY DL +L+L V + ATP
Sbjct: 636 IA---LIMTPTRELCTQIYSDLQPFAKALKLRVVAAYGGNAIKDQIAELKRGAEIIVATP 692
Query: 145 GFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILAL 199
G + L + + NL + +DEA + G F P K+ N PD +
Sbjct: 693 GRLIDLLAANGGRVTNLKRATYLVLDEADRMFDMG--FEPQVMKI--FNNVRPDRQTILF 748
Query: 200 TATAAPKVQKDVMESLCLQNPL---VLKSSFNRPNL--FYEV--------RYKDLLDDAY 246
+AT P++ D + L++P+ V S P + EV R +LL + Y
Sbjct: 749 SATM-PRII-DALTKKVLRDPVEITVGGRSVVAPEITQIVEVMDEGKKFNRLLELLGELY 806
Query: 247 ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306
AD + D ++++ + D+L L G C + H G + + R+S + D+
Sbjct: 807 AD-------DDDVRSLIFVERQEKADDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKK 859
Query: 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+++AT G+D K ++LV +++ P +E + +GR GR
Sbjct: 860 GVCPILIATSIAARGLDVKQLKLVINYDAPNHLEDYVHRAGRTGR 904
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana
GN=RH20 PE=1 SV=1
Length = 501
Score = 83.2 bits (204), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 91/359 (25%), Positives = 170/359 (47%), Gaps = 28/359 (7%)
Query: 51 LSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLI-ALMENQVIGLKEKGIAG 105
+ GRD + TG GK++ Y +PA+ A+P + P++ L + + ++ + A
Sbjct: 134 MKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEAS 193
Query: 106 EFLSSTQTMQVKTK-IYEDLDSGKPSLRLLYVTPELT-ATPGFMSKLKKIHSRGL--LNL 161
+F SS++ +KT IY + G P +R L E+ ATPG + + + ++ L +
Sbjct: 194 KFGSSSK---IKTTCIYGGVPKG-PQVRDLQKGVEIVIATPGRLIDMMESNNTNLRRVTY 249
Query: 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP- 220
+ +DEA + G D P RK+ S + PD L +AT +V++ + L NP
Sbjct: 250 LVLDEADRMLDMGFD--PQIRKIVS--HIRPDRQTLYWSATWPKEVEQ--LSKKFLYNPY 303
Query: 221 -LVLKSSFNRPNLFYEVRYKDLLDDA--YADLCSVLKANGDTCAIVYCLE-RTTCDELSA 276
+++ SS + N + D++ ++ Y L +L+ D I+ L+ + CD+++
Sbjct: 304 KVIIGSSDLKANRAIR-QIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITR 362
Query: 277 YLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP 336
L G + H + R VL ++ S + ++ AT G+D KDV+ V +++ P
Sbjct: 363 QLRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFP 422
Query: 337 KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR---RMEFILSKNQSKNSQSFSTRERSS 392
S+E + GR GR + ++ + + R + IL + K S ++ RS+
Sbjct: 423 GSLEDYVHRIGRTGRAGAKGTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRST 481
>sp|A6RW79|PRP5_BOTFB Pre-mRNA-processing ATP-dependent RNA helicase prp5 OS=Botryotinia
fuckeliana (strain B05.10) GN=prp5 PE=3 SV=1
Length = 1151
Score = 82.8 bits (203), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 100/420 (23%), Positives = 173/420 (41%), Gaps = 60/420 (14%)
Query: 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93
G+ + Q+ AI A++SGRD + TG GK++ + +P + PL
Sbjct: 572 LGYERPTSIQMQAIPAIMSGRDVIGVAKTGSGKTIAFLLPMFRH---IRDQRPL------ 622
Query: 94 QVIGLKEKGIAGEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYV---------------- 136
KG G L T T ++ T+I+++ KP L+ + +
Sbjct: 623 -------KGSDGPIGLIMTPTRELATQIHKEC---KPFLKAMGLRAVCAYGGAIIKDQIA 672
Query: 137 -----TPELTATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSYRKLSS 186
+ TPG M +L +S + NL V +DEA + G F P K+
Sbjct: 673 DLKRGAEIIVCTPGRMIELLAANSGRVTNLQRVTYVVLDEADRMFDMG--FEPQVMKV-- 728
Query: 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL---VLKSSFNRPNL--FYEVRY-KD 240
N P+ + +AT P++ D + LQ+P+ V S P + EVR K+
Sbjct: 729 FNNIRPNRQTILFSATM-PRIM-DALAKKTLQSPVEIVVGGRSVVAPEITQIVEVREEKE 786
Query: 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSV 300
L + + D +++ + D+L L G C + H G + R S
Sbjct: 787 KFHRLLELLGELYNTDEDARTLIFVDRQEKADDLLKDLMRKGYPCMSIHGGKDQVDRDST 846
Query: 301 LDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360
+DD+ + +++AT G+D K ++LV +F+ P +E + +GR GR ++
Sbjct: 847 IDDFKAGVVPIMIATSVAARGLDVKQLKLVVNFDAPNHLEDYVHRAGRTGRAGNTGTAVT 906
Query: 361 YYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESF 420
+ +++ + ++K ++ Q R +KS D + E SG R K LE F
Sbjct: 907 FI-TEEQEQYSVGIAKALEQSGQEVPDRLNEMRKSYKDKVKSGAKKESSGFRGKG-LERF 964
>sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DBP2 PE=3 SV=1
Length = 540
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 147/343 (42%), Gaps = 34/343 (9%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA--------LAKPG---IVLVVSPLIALM 91
Q A LSGRD + TG GK++ + +PA L PG IVL+++P
Sbjct: 137 QCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDGPIVLILAP----- 191
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKL 150
+ + ++ + A +F S++ T IY G P +R L E+ ATPG + +
Sbjct: 192 -TRELAVQIQTEATKFGQSSRIR--NTAIYGGAPKG-PQIRDLQRGVEICVATPGRLIDM 247
Query: 151 KKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ L + + +DEA + G F P RK+ S PD L +AT +VQ
Sbjct: 248 LETGKTNLKRVTYLVMDEADRMLDMG--FEPQIRKIVS--QIRPDRQTLLFSATWPKEVQ 303
Query: 209 KDVMESL--CLQ---NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+ M+ L +Q L L ++ N D + L + + NG ++
Sbjct: 304 RLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKISQENGKV--LI 361
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
+ + D+L+ +L G A H R VL ++ S R +++AT G+D
Sbjct: 362 FVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLD 421
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+D+ V +++ P + E + GR GR S Y+ MD+
Sbjct: 422 VRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDN 464
>sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DBP2 PE=3 SV=1
Length = 540
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 89/343 (25%), Positives = 147/343 (42%), Gaps = 34/343 (9%)
Query: 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA--------LAKPG---IVLVVSPLIALM 91
Q A LSGRD + TG GK++ + +PA L PG IVL+++P
Sbjct: 137 QCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDGPIVLILAP----- 191
Query: 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPEL-TATPGFMSKL 150
+ + ++ + A +F S++ T IY G P +R L E+ ATPG + +
Sbjct: 192 -TRELAVQIQTEATKFGQSSRIR--NTAIYGGAPKG-PQIRDLQRGVEICVATPGRLIDM 247
Query: 151 KKIHSRGL--LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208
+ L + + +DEA + G F P RK+ S PD L +AT +VQ
Sbjct: 248 LETGKTNLKRVTYLVMDEADRMLDMG--FEPQIRKIVS--QIRPDRQTLLFSATWPKEVQ 303
Query: 209 KDVMESL--CLQ---NPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263
+ M+ L +Q L L ++ N D + L + + NG ++
Sbjct: 304 RLAMDFLHDFIQVNIGSLDLTANHNVAQHVEVCTDFDKRSKLLSHLEKISQENGKV--LI 361
Query: 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323
+ + D+L+ +L G A H R VL ++ S R +++AT G+D
Sbjct: 362 FVATKRVADDLTKFLRMDGWPALAIHGDKQQAERDWVLAEFKSGRSPIMLATDVASRGLD 421
Query: 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366
+D+ V +++ P + E + GR GR S Y+ MD+
Sbjct: 422 VRDIGYVINYDFPNNCEDYIHRIGRTGRAGRKGTSYTYFTMDN 464
>sp|Q553B1|DDX46_DICDI ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum
GN=helB1 PE=2 SV=1
Length = 1151
Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 150/359 (41%), Gaps = 63/359 (17%)
Query: 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPG--- 79
V LL F + + Q I A+++GRD + TG GK++ + +P LA+P
Sbjct: 520 VHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAP 579
Query: 80 ----IVLVVSPL--IALMEN-------QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDS 126
I L++SP +AL + +V+GL+ + G S Q ++K D+
Sbjct: 580 GEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGGASISEQIAELKRGA--DI-- 635
Query: 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL-----VAIDEAHCISSWGHDFRPSY 181
+ TPG M + ++R + NL + +DEA + G F P
Sbjct: 636 -------------VVCTPGRMIDILCANNRRITNLRRVTFLVLDEADRMFDMG--FGPQI 680
Query: 182 R-KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL--------VLKSSFNRPNL 232
+ S+R PD + +AT PKV+ + L PL ++ S +
Sbjct: 681 NCIVDSIR---PDRQTIMFSATFPPKVEN--VAKKILNKPLEIIAGGRSIVSSDIEQ--- 732
Query: 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292
F EVR + +L S+ G +++ + T D L LS C + H
Sbjct: 733 FVEVRPTETRFRRLIELLSIWYHKGQI--LIFTNRQETTDNLYRQLSNSQYQCLSLHGSK 790
Query: 293 NDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351
+ R + D+ + K +++AT G+D KD+ LV +F+ P +E + GR GR
Sbjct: 791 DQTDRDETISDFKNKVKTILIATPLASRGLDIKDLNLVVNFDCPDHLEDYVHRVGRTGR 849
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 261,801,982
Number of Sequences: 539616
Number of extensions: 11080855
Number of successful extensions: 35268
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 973
Number of HSP's successfully gapped in prelim test: 207
Number of HSP's that attempted gapping in prelim test: 33024
Number of HSP's gapped (non-prelim): 1893
length of query: 724
length of database: 191,569,459
effective HSP length: 125
effective length of query: 599
effective length of database: 124,117,459
effective search space: 74346357941
effective search space used: 74346357941
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (29.6 bits)