Query 004900
Match_columns 724
No_of_seqs 371 out of 2836
Neff 7.0
Searched_HMMs 46136
Date Thu Mar 28 14:45:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0352 ATP-dependent DNA heli 100.0 9.4E-88 2E-92 704.6 34.7 428 23-453 4-447 (641)
2 COG0514 RecQ Superfamily II DN 100.0 3.8E-84 8.2E-89 725.4 38.9 401 24-441 3-403 (590)
3 KOG0351 ATP-dependent DNA heli 100.0 9.8E-81 2.1E-85 732.7 29.4 435 23-465 249-688 (941)
4 PLN03137 ATP-dependent DNA hel 100.0 8.1E-78 1.8E-82 706.9 45.6 422 18-441 440-870 (1195)
5 KOG0353 ATP-dependent DNA heli 100.0 2.2E-75 4.8E-80 603.2 27.6 412 14-440 70-528 (695)
6 PRK11057 ATP-dependent DNA hel 100.0 3.4E-70 7.4E-75 635.3 46.1 404 19-442 6-409 (607)
7 TIGR01389 recQ ATP-dependent D 100.0 2.8E-70 6E-75 636.2 44.4 396 27-441 2-397 (591)
8 TIGR00614 recQ_fam ATP-depende 100.0 5.7E-70 1.2E-74 617.1 43.9 394 29-438 2-402 (470)
9 PRK04837 ATP-dependent RNA hel 100.0 1.1E-49 2.3E-54 446.2 35.0 342 15-375 8-372 (423)
10 KOG0331 ATP-dependent RNA heli 100.0 5.6E-50 1.2E-54 442.5 30.3 342 16-377 92-460 (519)
11 PTZ00110 helicase; Provisional 100.0 1E-48 2.2E-53 449.9 38.1 345 14-376 129-495 (545)
12 PRK10590 ATP-dependent RNA hel 100.0 2.8E-48 6E-53 438.6 36.4 342 16-376 2-363 (456)
13 PRK11776 ATP-dependent RNA hel 100.0 2.4E-48 5.3E-53 439.8 36.0 343 15-376 4-360 (460)
14 PRK11192 ATP-dependent RNA hel 100.0 6.5E-48 1.4E-52 433.2 38.3 342 16-374 2-361 (434)
15 PRK04537 ATP-dependent RNA hel 100.0 4.1E-48 8.8E-53 446.6 36.3 343 16-376 10-375 (572)
16 PRK01297 ATP-dependent RNA hel 100.0 1.2E-47 2.5E-52 435.8 37.1 348 13-375 85-452 (475)
17 PLN00206 DEAD-box ATP-dependen 100.0 1.1E-47 2.3E-52 439.6 34.8 344 13-375 119-485 (518)
18 KOG0330 ATP-dependent RNA heli 100.0 2.5E-48 5.3E-53 405.7 25.7 346 10-378 56-420 (476)
19 COG0513 SrmB Superfamily II DN 100.0 2.7E-47 5.8E-52 434.6 35.5 343 15-377 29-393 (513)
20 PRK11634 ATP-dependent RNA hel 100.0 5.9E-47 1.3E-51 439.8 37.4 344 15-377 6-364 (629)
21 PTZ00424 helicase 45; Provisio 100.0 5.1E-46 1.1E-50 413.1 33.9 346 14-376 27-385 (401)
22 KOG0333 U5 snRNP-like RNA heli 100.0 9.8E-46 2.1E-50 397.4 28.9 343 13-373 243-632 (673)
23 KOG0345 ATP-dependent RNA heli 100.0 1.1E-44 2.5E-49 385.6 30.2 335 20-376 11-375 (567)
24 KOG0328 Predicted ATP-dependen 100.0 6E-45 1.3E-49 366.2 24.4 348 10-377 22-385 (400)
25 TIGR03817 DECH_helic helicase/ 100.0 3.9E-44 8.4E-49 423.6 35.1 338 21-371 20-394 (742)
26 KOG0338 ATP-dependent RNA heli 100.0 1.6E-44 3.5E-49 386.5 21.9 343 14-377 180-545 (691)
27 KOG0342 ATP-dependent RNA heli 100.0 9E-44 1.9E-48 381.3 26.5 344 11-375 78-447 (543)
28 KOG0336 ATP-dependent RNA heli 100.0 1.8E-43 3.9E-48 369.8 24.8 338 20-376 225-583 (629)
29 KOG0343 RNA Helicase [RNA proc 100.0 1.3E-43 2.8E-48 382.4 23.0 343 13-376 67-434 (758)
30 KOG0340 ATP-dependent RNA heli 100.0 7.7E-43 1.7E-47 360.8 26.9 352 12-380 4-376 (442)
31 KOG0348 ATP-dependent RNA heli 100.0 1.7E-42 3.7E-47 373.0 26.8 348 13-375 134-564 (708)
32 KOG0326 ATP-dependent RNA heli 100.0 2.9E-43 6.3E-48 359.0 16.0 343 14-379 84-443 (459)
33 KOG0347 RNA helicase [RNA proc 100.0 1.1E-41 2.4E-46 367.7 23.6 339 14-381 180-586 (731)
34 KOG0346 RNA helicase [RNA proc 100.0 3.4E-41 7.3E-46 356.2 24.1 346 11-376 15-424 (569)
35 KOG0335 ATP-dependent RNA heli 100.0 7.3E-41 1.6E-45 364.6 22.9 341 16-373 75-452 (482)
36 PRK14701 reverse gyrase; Provi 100.0 3.3E-39 7.1E-44 401.3 30.8 333 23-376 65-467 (1638)
37 TIGR00580 mfd transcription-re 100.0 3.2E-38 7E-43 377.2 38.2 321 19-365 433-770 (926)
38 KOG0341 DEAD-box protein abstr 100.0 9.1E-41 2E-45 347.5 14.0 333 13-366 168-529 (610)
39 PRK13767 ATP-dependent helicas 100.0 1.7E-38 3.7E-43 382.4 34.9 324 22-363 18-396 (876)
40 PRK02362 ski2-like helicase; P 100.0 2.4E-38 5.2E-43 376.7 33.8 331 16-366 2-398 (737)
41 PRK10917 ATP-dependent DNA hel 100.0 1.6E-37 3.4E-42 365.7 36.9 317 22-363 246-587 (681)
42 KOG0332 ATP-dependent RNA heli 100.0 1.2E-38 2.6E-43 331.4 24.1 355 8-376 83-455 (477)
43 KOG0339 ATP-dependent RNA heli 100.0 9.1E-38 2E-42 334.3 28.6 349 11-378 219-588 (731)
44 TIGR00643 recG ATP-dependent D 100.0 5.9E-37 1.3E-41 358.4 36.8 317 21-362 219-563 (630)
45 PRK10689 transcription-repair 100.0 8E-37 1.7E-41 372.3 37.7 320 19-364 582-918 (1147)
46 KOG0334 RNA helicase [RNA proc 100.0 1.6E-37 3.6E-42 358.6 26.3 346 13-377 363-732 (997)
47 COG1201 Lhr Lhr-like helicases 100.0 2.3E-36 4.9E-41 351.0 33.7 323 21-364 7-361 (814)
48 KOG0350 DEAD-box ATP-dependent 100.0 2.1E-37 4.6E-42 331.9 21.1 338 30-379 152-554 (620)
49 PRK00254 ski2-like helicase; P 100.0 3.9E-36 8.4E-41 357.0 33.8 324 17-366 3-389 (720)
50 KOG0344 ATP-dependent RNA heli 100.0 1.3E-36 2.7E-41 333.2 23.8 339 21-375 142-505 (593)
51 KOG4284 DEAD box protein [Tran 100.0 6.6E-37 1.4E-41 334.7 18.9 335 13-367 23-381 (980)
52 PRK01172 ski2-like helicase; P 100.0 5.4E-35 1.2E-39 345.3 34.2 337 16-375 2-389 (674)
53 KOG0327 Translation initiation 100.0 8.6E-36 1.9E-40 312.9 20.9 342 14-376 25-381 (397)
54 PRK09751 putative ATP-dependen 100.0 3.4E-34 7.5E-39 351.1 29.0 291 58-363 1-383 (1490)
55 PRK09401 reverse gyrase; Revie 100.0 1.3E-33 2.9E-38 344.9 31.7 306 24-350 67-429 (1176)
56 TIGR01587 cas3_core CRISPR-ass 100.0 7.9E-34 1.7E-38 311.0 25.7 302 55-365 1-336 (358)
57 KOG0337 ATP-dependent RNA heli 100.0 2.3E-34 4.9E-39 303.4 17.4 342 14-374 20-377 (529)
58 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.2E-33 9.2E-38 325.4 29.8 317 25-362 3-388 (844)
59 TIGR03158 cas3_cyano CRISPR-as 100.0 9.6E-33 2.1E-37 302.4 28.8 299 42-350 1-357 (357)
60 COG1202 Superfamily II helicas 100.0 2.4E-32 5.1E-37 296.7 24.7 333 16-365 195-553 (830)
61 PHA02558 uvsW UvsW helicase; P 100.0 8.6E-32 1.9E-36 307.4 28.3 300 37-366 113-453 (501)
62 COG1111 MPH1 ERCC4-like helica 100.0 3.6E-31 7.8E-36 286.6 30.1 319 35-371 12-487 (542)
63 PRK12898 secA preprotein trans 100.0 4.8E-31 1E-35 302.3 31.8 326 26-368 92-589 (656)
64 PHA02653 RNA helicase NPH-II; 100.0 2.9E-31 6.3E-36 308.2 29.2 297 41-367 167-516 (675)
65 COG1205 Distinct helicase fami 100.0 9.6E-31 2.1E-35 311.3 29.8 335 24-367 57-424 (851)
66 PRK13766 Hef nuclease; Provisi 100.0 3.3E-30 7.1E-35 309.4 34.1 315 36-368 13-482 (773)
67 PRK09200 preprotein translocas 100.0 8.2E-30 1.8E-34 297.8 33.7 326 26-368 67-544 (790)
68 TIGR03714 secA2 accessory Sec 100.0 1.2E-29 2.6E-34 294.0 32.1 323 27-368 60-540 (762)
69 TIGR01054 rgy reverse gyrase. 100.0 1E-29 2.2E-34 311.2 31.9 290 24-337 65-409 (1171)
70 PRK11664 ATP-dependent RNA hel 100.0 8.5E-30 1.9E-34 302.7 28.9 300 44-368 11-342 (812)
71 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.2E-29 2.7E-34 300.8 30.2 304 43-369 7-340 (819)
72 TIGR00603 rad25 DNA repair hel 100.0 1.8E-29 3.8E-34 292.5 28.5 304 38-367 255-609 (732)
73 PRK05580 primosome assembly pr 100.0 7.9E-29 1.7E-33 291.2 34.5 318 38-373 144-557 (679)
74 PRK04914 ATP-dependent helicas 100.0 6.3E-28 1.4E-32 288.1 36.1 315 38-363 152-601 (956)
75 COG1204 Superfamily II helicas 100.0 2.9E-29 6.3E-34 295.1 24.0 322 20-362 14-405 (766)
76 TIGR00595 priA primosomal prot 100.0 1.7E-28 3.6E-33 279.3 28.2 292 57-366 1-383 (505)
77 TIGR00963 secA preprotein tran 100.0 5.2E-28 1.1E-32 278.8 32.3 325 26-368 45-520 (745)
78 KOG0329 ATP-dependent RNA heli 100.0 2.7E-30 5.9E-35 257.2 10.9 297 14-366 41-356 (387)
79 KOG0354 DEAD-box like helicase 100.0 2E-28 4.3E-33 279.0 24.3 313 36-366 60-530 (746)
80 COG1200 RecG RecG-like helicas 100.0 2.3E-26 5E-31 258.8 33.7 327 15-366 240-592 (677)
81 COG1061 SSL2 DNA or RNA helica 100.0 4.6E-27 1E-31 264.0 27.6 295 37-357 35-382 (442)
82 KOG0952 DNA/RNA helicase MER3/ 100.0 2.3E-26 5E-31 264.3 28.5 338 24-377 95-503 (1230)
83 COG1197 Mfd Transcription-repa 99.9 7.3E-26 1.6E-30 266.9 32.4 324 16-365 573-913 (1139)
84 PRK11131 ATP-dependent RNA hel 99.9 1.5E-26 3.2E-31 279.9 27.3 298 42-369 78-415 (1294)
85 PRK12906 secA preprotein trans 99.9 1.8E-24 3.8E-29 251.7 30.6 326 25-367 68-555 (796)
86 TIGR01967 DEAH_box_HrpA ATP-de 99.9 7.5E-25 1.6E-29 266.1 27.3 300 44-369 73-408 (1283)
87 KOG0951 RNA helicase BRR2, DEA 99.9 1.4E-24 3.1E-29 251.9 25.0 327 33-379 304-716 (1674)
88 KOG0349 Putative DEAD-box RNA 99.9 2.2E-25 4.7E-30 235.5 14.6 268 80-364 288-614 (725)
89 PRK09694 helicase Cas3; Provis 99.9 1.2E-23 2.5E-28 250.2 30.0 309 34-354 282-664 (878)
90 PRK11448 hsdR type I restricti 99.9 5E-23 1.1E-27 251.1 30.1 332 20-363 382-813 (1123)
91 PRK12904 preprotein translocas 99.9 1.2E-22 2.5E-27 237.4 31.6 324 26-367 70-575 (830)
92 PLN03142 Probable chromatin-re 99.9 2.7E-22 5.8E-27 240.9 30.7 308 38-362 169-594 (1033)
93 KOG0947 Cytoplasmic exosomal R 99.9 1.4E-22 3.1E-27 230.8 25.3 321 30-376 290-736 (1248)
94 PRK13104 secA preprotein trans 99.9 6.3E-22 1.4E-26 231.5 29.4 325 26-367 71-589 (896)
95 COG4581 Superfamily II RNA hel 99.9 2.3E-22 5.1E-27 237.4 23.7 308 32-361 114-533 (1041)
96 KOG0950 DNA polymerase theta/e 99.9 1.1E-21 2.3E-26 225.5 23.6 337 24-379 209-625 (1008)
97 PRK13107 preprotein translocas 99.9 4.7E-20 1E-24 215.3 31.9 325 26-367 71-593 (908)
98 COG1110 Reverse gyrase [DNA re 99.9 2.5E-20 5.4E-25 215.2 29.0 291 24-336 69-416 (1187)
99 KOG0948 Nuclear exosomal RNA h 99.9 2.1E-21 4.6E-26 216.7 15.3 313 39-377 130-552 (1041)
100 cd00268 DEADc DEAD-box helicas 99.9 1.4E-20 3.1E-25 189.4 19.7 183 17-215 1-196 (203)
101 TIGR00631 uvrb excinuclease AB 99.9 1.3E-19 2.8E-24 211.6 30.5 116 257-373 441-561 (655)
102 COG4098 comFA Superfamily II D 99.9 1.6E-19 3.5E-24 187.5 27.2 297 37-365 96-415 (441)
103 COG1198 PriA Primosomal protei 99.9 1.3E-19 2.8E-24 210.3 28.5 322 37-375 197-613 (730)
104 PRK12899 secA preprotein trans 99.8 2.9E-19 6.2E-24 209.0 28.3 121 244-367 552-683 (970)
105 COG1203 CRISPR-associated heli 99.8 1E-19 2.3E-24 216.2 23.5 314 39-363 196-548 (733)
106 PRK05298 excinuclease ABC subu 99.8 4.2E-18 9.2E-23 199.9 32.1 121 245-368 435-560 (652)
107 PRK12900 secA preprotein trans 99.8 8.8E-19 1.9E-23 205.4 25.5 124 243-368 581-714 (1025)
108 COG1643 HrpA HrpA-like helicas 99.8 2.1E-18 4.5E-23 203.1 24.2 305 41-368 53-390 (845)
109 PF00270 DEAD: DEAD/DEAH box h 99.8 4.7E-19 1E-23 172.4 14.2 156 40-207 1-166 (169)
110 KOG0385 Chromatin remodeling c 99.8 4.3E-18 9.4E-23 191.3 23.6 310 37-363 166-595 (971)
111 PRK12326 preprotein translocas 99.8 1.4E-16 3E-21 182.7 32.0 323 26-367 67-549 (764)
112 KOG0922 DEAH-box RNA helicase 99.8 9.5E-18 2.1E-22 187.9 20.7 301 44-369 57-394 (674)
113 TIGR00348 hsdR type I site-spe 99.8 1.1E-16 2.5E-21 188.5 28.5 314 20-351 211-633 (667)
114 TIGR01407 dinG_rel DnaQ family 99.8 1.5E-16 3.3E-21 192.6 30.2 167 194-364 596-813 (850)
115 KOG4150 Predicted ATP-dependen 99.8 7.1E-18 1.5E-22 183.6 14.2 335 29-370 277-647 (1034)
116 COG0556 UvrB Helicase subunit 99.7 3.6E-16 7.9E-21 170.7 26.2 163 194-364 387-556 (663)
117 KOG0949 Predicted helicase, DE 99.7 1.5E-16 3.3E-21 182.3 24.0 154 39-206 512-674 (1330)
118 PRK13103 secA preprotein trans 99.7 1.1E-15 2.4E-20 179.2 28.4 323 26-367 71-593 (913)
119 cd00079 HELICc Helicase superf 99.7 7.5E-17 1.6E-21 149.6 13.7 118 244-361 12-131 (131)
120 COG4096 HsdR Type I site-speci 99.7 1.6E-16 3.4E-21 181.8 16.3 293 36-351 163-524 (875)
121 KOG0953 Mitochondrial RNA heli 99.7 9.7E-16 2.1E-20 167.8 21.5 280 54-377 192-488 (700)
122 KOG0923 mRNA splicing factor A 99.7 1.2E-15 2.6E-20 169.5 22.5 315 27-365 254-606 (902)
123 PRK12903 secA preprotein trans 99.7 6.1E-15 1.3E-19 171.3 28.7 323 26-367 67-541 (925)
124 KOG0387 Transcription-coupled 99.7 8.1E-16 1.7E-20 174.1 20.7 309 37-361 204-652 (923)
125 KOG0384 Chromodomain-helicase 99.7 1.1E-15 2.3E-20 179.5 22.0 310 37-361 369-805 (1373)
126 PF00271 Helicase_C: Helicase 99.7 9.3E-17 2E-21 136.9 8.5 78 276-353 1-78 (78)
127 PRK07246 bifunctional ATP-depe 99.7 1.4E-14 3.1E-19 173.8 29.1 168 195-365 575-783 (820)
128 KOG0390 DNA repair protein, SN 99.7 9.4E-15 2E-19 169.3 25.9 309 38-362 238-702 (776)
129 CHL00122 secA preprotein trans 99.7 4.2E-14 9E-19 165.4 29.3 282 26-325 65-491 (870)
130 KOG0924 mRNA splicing factor A 99.6 2.4E-15 5.3E-20 167.1 16.8 300 40-365 358-697 (1042)
131 KOG0389 SNF2 family DNA-depend 99.6 1.7E-14 3.6E-19 163.4 21.3 321 35-367 397-890 (941)
132 KOG1123 RNA polymerase II tran 99.6 8.9E-16 1.9E-20 165.8 9.4 286 37-354 301-636 (776)
133 PRK08074 bifunctional ATP-depe 99.6 4.2E-13 9.1E-18 163.8 30.3 170 195-365 674-893 (928)
134 KOG0920 ATP-dependent RNA heli 99.6 5.8E-14 1.2E-18 165.3 21.2 307 39-368 174-547 (924)
135 KOG0926 DEAH-box RNA helicase 99.6 3.3E-14 7.2E-19 160.6 17.5 299 44-364 262-703 (1172)
136 PRK14873 primosome assembly pr 99.6 1.1E-12 2.5E-17 153.4 28.6 289 58-374 165-547 (665)
137 smart00487 DEXDc DEAD-like hel 99.5 8.1E-14 1.8E-18 137.0 15.3 167 34-215 4-182 (201)
138 PRK12902 secA preprotein trans 99.5 5.4E-12 1.2E-16 147.6 30.2 135 26-171 74-218 (939)
139 TIGR03117 cas_csf4 CRISPR-asso 99.5 3E-12 6.5E-17 148.3 27.9 168 195-365 373-616 (636)
140 smart00490 HELICc helicase sup 99.5 4.2E-14 9.1E-19 120.1 8.9 81 273-353 2-82 (82)
141 KOG1000 Chromatin remodeling p 99.5 2.3E-13 5E-18 147.4 15.8 308 36-363 196-599 (689)
142 COG1199 DinG Rad3-related DNA 99.5 4.3E-12 9.2E-17 150.4 25.2 165 196-364 406-616 (654)
143 PF04851 ResIII: Type III rest 99.5 8.3E-14 1.8E-18 136.7 7.7 153 38-204 3-183 (184)
144 PRK11747 dinG ATP-dependent DN 99.5 2.7E-11 5.8E-16 143.8 30.2 163 196-364 459-673 (697)
145 KOG0392 SNF2 family DNA-depend 99.5 3.2E-12 6.9E-17 150.2 21.3 306 38-361 975-1448(1549)
146 COG4889 Predicted helicase [Ge 99.4 2E-13 4.4E-18 155.2 8.4 311 37-353 160-573 (1518)
147 TIGR00604 rad3 DNA repair heli 99.4 7E-11 1.5E-15 140.9 28.0 70 32-101 4-83 (705)
148 KOG0386 Chromatin remodeling c 99.4 4.1E-12 9E-17 147.3 15.6 324 37-376 393-847 (1157)
149 KOG0925 mRNA splicing factor A 99.4 7.7E-11 1.7E-15 127.9 23.6 320 14-365 24-387 (699)
150 PRK12901 secA preprotein trans 99.3 6.5E-11 1.4E-15 140.0 22.1 123 243-367 611-743 (1112)
151 KOG0951 RNA helicase BRR2, DEA 99.3 2.8E-11 6E-16 142.7 18.8 309 37-378 1142-1507(1674)
152 cd00046 DEXDc DEAD-like helica 99.3 2.2E-11 4.8E-16 112.6 11.0 136 54-203 1-144 (144)
153 TIGR02562 cas3_yersinia CRISPR 99.2 1.6E-09 3.6E-14 128.9 23.1 92 261-355 759-882 (1110)
154 KOG0388 SNF2 family DNA-depend 99.2 7.5E-10 1.6E-14 124.4 18.9 105 257-361 1043-1148(1185)
155 KOG4439 RNA polymerase II tran 99.0 6.3E-09 1.4E-13 117.5 18.0 91 271-361 759-852 (901)
156 COG0553 HepA Superfamily II DN 99.0 1.2E-08 2.6E-13 124.4 20.8 103 260-362 713-817 (866)
157 KOG1002 Nucleotide excision re 99.0 1.4E-08 3E-13 110.7 17.3 107 259-365 639-749 (791)
158 KOG0391 SNF2 family DNA-depend 99.0 6E-08 1.3E-12 114.0 22.3 120 258-377 1276-1397(1958)
159 PF00176 SNF2_N: SNF2 family N 98.9 7.9E-09 1.7E-13 109.8 12.7 161 42-220 1-189 (299)
160 PF02399 Herpes_ori_bp: Origin 98.9 7.1E-08 1.5E-12 112.6 20.2 281 56-365 52-388 (824)
161 COG0653 SecA Preprotein transl 98.9 2.7E-07 5.9E-12 108.4 24.0 327 28-367 71-547 (822)
162 KOG1015 Transcription regulato 98.7 8E-07 1.7E-11 103.2 20.2 104 258-361 1142-1271(1567)
163 PF06862 DUF1253: Protein of u 98.7 1.7E-05 3.6E-10 88.7 28.7 240 135-375 130-425 (442)
164 COG0610 Type I site-specific r 98.6 1.1E-05 2.3E-10 99.2 27.3 282 54-352 274-636 (962)
165 PF07652 Flavi_DEAD: Flaviviru 98.6 1.9E-08 4.1E-13 95.2 1.7 133 52-207 3-140 (148)
166 PF07517 SecA_DEAD: SecA DEAD- 98.6 6.5E-07 1.4E-11 94.1 12.9 135 26-171 66-210 (266)
167 smart00489 DEXDc3 DEAD-like he 98.2 8.6E-06 1.9E-10 87.2 10.7 71 33-104 4-87 (289)
168 smart00488 DEXDc2 DEAD-like he 98.2 8.6E-06 1.9E-10 87.2 10.7 71 33-104 4-87 (289)
169 KOG2340 Uncharacterized conser 98.1 0.00012 2.6E-09 81.4 16.5 116 260-375 554-678 (698)
170 PF13307 Helicase_C_2: Helicas 97.9 2.8E-05 6.2E-10 76.4 8.0 112 250-364 2-149 (167)
171 PRK15483 type III restriction- 97.9 0.00022 4.7E-09 86.2 16.1 44 308-351 501-544 (986)
172 TIGR00596 rad1 DNA repair prot 97.9 0.0004 8.7E-09 83.6 18.0 79 131-218 8-92 (814)
173 PF13872 AAA_34: P-loop contai 97.7 0.00039 8.6E-09 73.8 13.0 164 38-208 37-225 (303)
174 KOG0952 DNA/RNA helicase MER3/ 97.6 9.2E-06 2E-10 96.1 -0.5 125 38-173 927-1061(1230)
175 KOG0921 Dosage compensation co 97.5 0.0011 2.5E-08 77.7 13.8 106 258-364 643-773 (1282)
176 KOG1016 Predicted DNA helicase 97.5 0.025 5.5E-07 65.8 23.5 116 259-374 720-856 (1387)
177 PF13604 AAA_30: AAA domain; P 97.3 0.0016 3.6E-08 65.7 10.3 56 38-93 1-61 (196)
178 PF13086 AAA_11: AAA domain; P 97.2 0.00095 2.1E-08 67.7 7.7 63 38-100 1-75 (236)
179 KOG1802 RNA helicase nonsense 97.2 0.0024 5.1E-08 73.1 11.0 78 33-110 405-486 (935)
180 KOG1803 DNA helicase [Replicat 97.0 0.0013 2.9E-08 74.7 6.7 63 37-99 184-250 (649)
181 PF02562 PhoH: PhoH-like prote 96.9 0.0027 5.8E-08 64.5 8.1 54 37-90 3-61 (205)
182 PF12340 DUF3638: Protein of u 96.9 0.011 2.3E-07 60.9 12.2 62 37-100 22-91 (229)
183 PRK10536 hypothetical protein; 96.8 0.012 2.7E-07 61.6 12.2 57 34-90 55-116 (262)
184 KOG1805 DNA replication helica 96.8 0.0062 1.3E-07 72.6 10.8 127 38-172 669-810 (1100)
185 smart00492 HELICc3 helicase su 96.8 0.0093 2E-07 57.1 9.9 78 286-363 25-136 (141)
186 PF13245 AAA_19: Part of AAA d 96.7 0.0041 9E-08 53.0 6.4 53 46-98 2-62 (76)
187 TIGR01448 recD_rel helicase, p 96.6 0.02 4.4E-07 68.9 13.4 63 29-92 315-382 (720)
188 smart00491 HELICc2 helicase su 96.6 0.012 2.5E-07 56.5 9.0 93 271-363 4-137 (142)
189 PF09848 DUF2075: Uncharacteri 96.6 0.01 2.2E-07 65.4 9.8 45 56-100 4-53 (352)
190 PF13401 AAA_22: AAA domain; P 96.4 0.011 2.4E-07 54.7 7.8 19 53-71 4-22 (131)
191 PRK10875 recD exonuclease V su 96.4 0.04 8.7E-07 65.0 14.0 75 24-98 137-219 (615)
192 PRK12723 flagellar biosynthesi 96.3 0.08 1.7E-06 59.1 15.0 124 54-216 175-310 (388)
193 KOG0383 Predicted helicase [Ge 96.2 0.0026 5.7E-08 74.6 2.4 64 257-321 630-696 (696)
194 TIGR01447 recD exodeoxyribonuc 96.0 0.054 1.2E-06 63.7 12.3 70 29-98 136-213 (586)
195 PF00448 SRP54: SRP54-type pro 95.9 0.093 2E-06 53.1 11.9 127 56-215 4-137 (196)
196 cd00009 AAA The AAA+ (ATPases 95.9 0.07 1.5E-06 49.1 10.2 19 53-71 19-37 (151)
197 TIGR00376 DNA helicase, putati 95.8 0.036 7.9E-07 65.8 9.8 72 37-108 156-231 (637)
198 COG1875 NYN ribonuclease and A 95.6 0.034 7.5E-07 60.3 7.5 63 30-92 220-290 (436)
199 PF05970 PIF1: PIF1-like helic 95.5 0.044 9.6E-07 60.7 8.5 54 38-91 1-63 (364)
200 smart00382 AAA ATPases associa 95.5 0.035 7.7E-07 50.5 6.5 38 53-90 2-42 (148)
201 PRK08181 transposase; Validate 95.4 0.11 2.3E-06 55.3 10.7 54 40-93 89-148 (269)
202 PF13871 Helicase_C_4: Helicas 95.3 0.045 9.7E-07 58.1 7.3 59 299-357 52-118 (278)
203 PRK08727 hypothetical protein; 95.3 0.1 2.2E-06 54.2 9.7 17 54-70 42-58 (233)
204 PF00580 UvrD-helicase: UvrD/R 95.2 0.038 8.2E-07 58.8 6.7 60 39-100 1-67 (315)
205 PRK14974 cell division protein 95.2 0.64 1.4E-05 51.0 16.0 51 158-212 222-273 (336)
206 PRK04296 thymidine kinase; Pro 95.0 0.058 1.3E-06 54.1 7.0 33 55-87 4-39 (190)
207 COG2256 MGS1 ATPase related to 95.0 0.081 1.8E-06 58.3 8.4 34 54-87 49-82 (436)
208 COG3587 Restriction endonuclea 95.0 0.027 6E-07 66.5 5.1 45 307-351 482-526 (985)
209 KOG1131 RNA polymerase II tran 95.0 0.16 3.4E-06 57.3 10.6 69 32-100 10-89 (755)
210 PRK06526 transposase; Provisio 95.0 0.073 1.6E-06 56.0 7.9 22 50-71 95-116 (254)
211 cd01122 GP4d_helicase GP4d_hel 95.0 0.36 7.8E-06 50.8 13.1 120 50-172 27-154 (271)
212 cd01120 RecA-like_NTPases RecA 94.9 0.32 7E-06 46.0 11.6 35 56-90 2-39 (165)
213 KOG1132 Helicase of the DEAD s 94.9 0.059 1.3E-06 64.1 7.3 76 33-109 17-143 (945)
214 PLN03025 replication factor C 94.9 0.14 3E-06 55.7 9.9 49 158-212 99-147 (319)
215 PRK06893 DNA replication initi 94.8 0.097 2.1E-06 54.1 8.2 48 159-208 92-139 (229)
216 PRK12377 putative replication 94.8 0.17 3.7E-06 53.1 9.9 40 54-93 102-143 (248)
217 PRK11889 flhF flagellar biosyn 94.7 0.84 1.8E-05 51.0 15.3 55 158-216 320-375 (436)
218 cd01124 KaiC KaiC is a circadi 94.7 0.23 5E-06 48.9 10.2 48 56-104 2-52 (187)
219 PRK14956 DNA polymerase III su 94.6 0.27 5.9E-06 56.1 11.6 20 55-74 42-61 (484)
220 PRK05703 flhF flagellar biosyn 94.6 0.93 2E-05 51.4 15.8 55 158-216 299-355 (424)
221 PF05621 TniB: Bacterial TniB 94.5 0.24 5.3E-06 53.1 10.3 17 54-70 62-78 (302)
222 PRK08084 DNA replication initi 94.5 0.15 3.3E-06 52.9 8.7 18 54-71 46-63 (235)
223 PRK06921 hypothetical protein; 94.4 0.66 1.4E-05 49.2 13.4 41 53-93 117-160 (266)
224 PRK05580 primosome assembly pr 94.3 0.18 3.9E-06 60.5 9.9 76 258-334 190-266 (679)
225 COG1419 FlhF Flagellar GTP-bin 94.2 0.94 2E-05 50.4 14.2 124 53-219 203-339 (407)
226 PRK14712 conjugal transfer nic 94.1 0.17 3.7E-06 65.1 9.5 65 38-106 835-908 (1623)
227 PRK07952 DNA replication prote 94.1 0.46 9.9E-06 49.8 11.2 39 54-92 100-140 (244)
228 PRK10917 ATP-dependent DNA hel 94.0 0.11 2.4E-06 62.4 7.3 77 257-333 309-390 (681)
229 PRK12323 DNA polymerase III su 93.9 0.27 5.9E-06 57.9 9.9 52 156-213 122-173 (700)
230 PRK14722 flhF flagellar biosyn 93.9 0.74 1.6E-05 51.2 12.9 54 158-215 215-269 (374)
231 KOG1001 Helicase-like transcri 93.8 0.19 4.2E-06 59.8 8.8 137 55-217 154-306 (674)
232 PRK06835 DNA replication prote 93.7 0.67 1.4E-05 50.7 12.0 42 52-93 182-225 (329)
233 TIGR00595 priA primosomal prot 93.7 0.25 5.5E-06 57.2 9.2 76 258-334 25-101 (505)
234 PRK13826 Dtr system oriT relax 93.6 0.49 1.1E-05 59.1 12.1 68 37-108 380-452 (1102)
235 PRK12724 flagellar biosynthesi 93.6 1.7 3.7E-05 49.0 15.0 122 55-216 225-357 (432)
236 PRK05973 replicative DNA helic 93.5 0.95 2.1E-05 47.2 12.1 85 18-104 21-117 (237)
237 KOG0298 DEAD box-containing he 93.4 0.076 1.6E-06 65.3 4.5 149 52-215 373-561 (1394)
238 PRK14949 DNA polymerase III su 93.4 0.48 1E-05 57.7 11.1 49 156-210 117-165 (944)
239 cd00984 DnaB_C DnaB helicase C 93.4 0.6 1.3E-05 48.2 10.6 115 52-172 12-137 (242)
240 cd01126 TraG_VirD4 The TraG/Tr 93.3 0.059 1.3E-06 60.1 3.2 55 55-109 1-56 (384)
241 COG1110 Reverse gyrase [DNA re 93.3 0.28 6E-06 59.6 8.7 77 244-320 111-193 (1187)
242 PRK13342 recombination factor 93.2 0.47 1E-05 53.5 10.3 21 54-74 37-57 (413)
243 PRK14873 primosome assembly pr 93.2 0.47 1E-05 56.7 10.5 76 258-334 188-265 (665)
244 PRK08116 hypothetical protein; 93.1 1.3 2.8E-05 47.0 12.8 39 55-93 116-156 (268)
245 PF13173 AAA_14: AAA domain 93.1 0.47 1E-05 44.2 8.5 40 159-206 62-101 (128)
246 PRK13889 conjugal transfer rel 93.0 4.5 9.7E-05 50.5 18.9 56 35-91 344-403 (988)
247 PRK04195 replication factor C 93.0 0.61 1.3E-05 53.7 11.0 32 53-84 39-70 (482)
248 PF03796 DnaB_C: DnaB-like hel 92.9 0.55 1.2E-05 49.3 9.6 143 55-203 21-180 (259)
249 PRK13341 recombination factor 92.8 0.71 1.5E-05 55.7 11.4 20 55-74 54-73 (725)
250 PF00004 AAA: ATPase family as 92.8 0.7 1.5E-05 42.3 9.1 19 56-74 1-19 (132)
251 PRK12422 chromosomal replicati 92.8 0.79 1.7E-05 52.3 11.3 49 158-209 202-250 (445)
252 PRK13709 conjugal transfer nic 92.7 0.44 9.6E-06 62.2 10.1 67 38-108 967-1042(1747)
253 PF02534 T4SS-DNA_transf: Type 92.7 0.094 2E-06 60.0 3.8 55 55-109 46-101 (469)
254 PRK05563 DNA polymerase III su 92.6 0.66 1.4E-05 54.4 10.7 21 54-74 39-59 (559)
255 PRK14959 DNA polymerase III su 92.5 1 2.2E-05 53.2 11.9 20 55-74 40-59 (624)
256 PHA02544 44 clamp loader, smal 92.5 2 4.3E-05 46.3 13.5 44 159-207 101-144 (316)
257 TIGR02768 TraA_Ti Ti-type conj 92.4 5.4 0.00012 48.6 18.4 54 38-91 352-409 (744)
258 KOG1133 Helicase of the DEAD s 92.4 2.2 4.7E-05 50.2 14.0 116 244-363 612-778 (821)
259 PRK12727 flagellar biosynthesi 92.4 3.1 6.7E-05 48.3 15.3 54 158-215 428-481 (559)
260 PRK08769 DNA polymerase III su 92.4 0.68 1.5E-05 50.4 9.6 36 36-71 2-44 (319)
261 PRK05707 DNA polymerase III su 92.4 1 2.2E-05 49.3 11.0 33 39-71 4-40 (328)
262 PHA02533 17 large terminase pr 92.4 0.63 1.4E-05 54.2 10.0 63 38-100 59-126 (534)
263 TIGR00643 recG ATP-dependent D 92.2 0.25 5.4E-06 58.9 6.6 75 258-332 284-363 (630)
264 PRK06731 flhF flagellar biosyn 92.2 4.7 0.0001 42.9 15.5 56 157-216 153-209 (270)
265 TIGR03015 pepcterm_ATPase puta 92.2 0.93 2E-05 47.4 10.3 18 55-72 45-62 (269)
266 KOG0989 Replication factor C, 92.2 0.47 1E-05 50.7 7.7 35 42-76 40-80 (346)
267 TIGR02760 TraI_TIGR conjugativ 92.2 0.45 9.8E-06 63.4 9.4 66 37-106 1018-1092(1960)
268 PF03354 Terminase_1: Phage Te 92.1 0.9 2E-05 52.3 10.8 61 41-101 1-77 (477)
269 PRK07003 DNA polymerase III su 92.1 0.86 1.9E-05 54.6 10.6 47 157-209 118-164 (830)
270 PRK00149 dnaA chromosomal repl 92.0 0.94 2E-05 51.7 10.8 18 54-71 149-166 (450)
271 TIGR02928 orc1/cdc6 family rep 92.0 2 4.4E-05 47.1 13.2 17 54-70 41-57 (365)
272 PRK14964 DNA polymerase III su 92.0 1.2 2.6E-05 51.3 11.4 49 157-211 115-163 (491)
273 TIGR02881 spore_V_K stage V sp 91.9 0.69 1.5E-05 48.7 8.9 19 54-72 43-61 (261)
274 PRK13897 type IV secretion sys 91.9 0.14 3.1E-06 60.3 4.0 57 54-110 159-216 (606)
275 PTZ00112 origin recognition co 91.9 3 6.4E-05 50.9 14.6 32 39-70 759-798 (1164)
276 KOG0701 dsRNA-specific nucleas 91.8 0.11 2.5E-06 66.1 3.2 95 259-353 293-399 (1606)
277 PRK14962 DNA polymerase III su 91.8 0.83 1.8E-05 52.5 10.0 20 55-74 38-57 (472)
278 TIGR02760 TraI_TIGR conjugativ 91.8 6.6 0.00014 52.8 19.3 55 38-92 429-488 (1960)
279 KOG0741 AAA+-type ATPase [Post 91.8 0.84 1.8E-05 52.0 9.5 33 55-87 540-573 (744)
280 PRK08903 DnaA regulatory inact 91.6 1 2.2E-05 46.2 9.6 17 53-69 42-58 (227)
281 PRK07764 DNA polymerase III su 91.6 1 2.2E-05 55.1 10.9 47 157-209 119-165 (824)
282 PRK14951 DNA polymerase III su 91.5 1.1 2.4E-05 53.0 10.9 48 156-209 122-169 (618)
283 COG1444 Predicted P-loop ATPas 91.5 1.3 2.8E-05 53.1 11.2 133 37-204 213-357 (758)
284 PF05496 RuvB_N: Holliday junc 91.4 0.37 8.1E-06 49.6 5.9 21 55-75 52-72 (233)
285 PRK14958 DNA polymerase III su 91.4 1.3 2.7E-05 51.5 11.0 43 156-204 117-159 (509)
286 TIGR02655 circ_KaiC circadian 91.3 0.82 1.8E-05 52.7 9.3 108 45-170 250-365 (484)
287 PRK09165 replicative DNA helic 91.3 1.3 2.9E-05 51.2 11.0 116 55-172 219-355 (497)
288 TIGR03600 phage_DnaB phage rep 91.3 1.9 4.1E-05 48.7 12.1 146 53-202 194-353 (421)
289 PF00308 Bac_DnaA: Bacterial d 91.3 0.83 1.8E-05 46.9 8.4 14 55-68 36-49 (219)
290 PRK07994 DNA polymerase III su 91.3 1.7 3.7E-05 51.6 12.0 50 156-211 117-166 (647)
291 PRK14961 DNA polymerase III su 91.2 1.3 2.7E-05 49.2 10.4 19 55-73 40-58 (363)
292 PRK14948 DNA polymerase III su 91.2 1.4 3.1E-05 52.3 11.3 20 54-73 39-58 (620)
293 PRK06645 DNA polymerase III su 91.2 1.5 3.2E-05 50.9 11.1 21 54-74 44-64 (507)
294 PRK00411 cdc6 cell division co 91.1 4.4 9.5E-05 45.0 14.7 18 54-71 56-73 (394)
295 PRK06067 flagellar accessory p 91.0 8.9 0.00019 39.4 15.9 102 53-172 25-134 (234)
296 COG1198 PriA Primosomal protei 91.0 0.56 1.2E-05 56.2 7.7 82 247-331 236-318 (730)
297 PF06745 KaiC: KaiC; InterPro 91.0 1.3 2.9E-05 45.3 9.6 100 53-170 19-127 (226)
298 TIGR00362 DnaA chromosomal rep 90.9 1.1 2.3E-05 50.5 9.6 17 55-71 138-154 (405)
299 PRK08760 replicative DNA helic 90.9 1.1 2.4E-05 51.6 9.8 144 55-201 231-387 (476)
300 TIGR03878 thermo_KaiC_2 KaiC d 90.8 1 2.2E-05 47.5 8.8 51 53-103 36-92 (259)
301 PRK05748 replicative DNA helic 90.8 1.5 3.2E-05 50.1 10.7 148 54-203 204-365 (448)
302 PRK05595 replicative DNA helic 90.7 1.2 2.6E-05 50.9 9.8 154 46-202 190-360 (444)
303 PRK13850 type IV secretion sys 90.7 0.27 5.7E-06 58.7 4.7 56 54-109 140-196 (670)
304 PRK10416 signal recognition pa 90.6 8.1 0.00018 42.1 15.7 57 157-214 195-255 (318)
305 PRK08840 replicative DNA helic 90.6 2.5 5.4E-05 48.5 12.3 145 54-201 218-377 (464)
306 PRK09183 transposase/IS protei 90.5 2.2 4.7E-05 45.1 10.9 42 50-92 99-143 (259)
307 PRK14960 DNA polymerase III su 90.4 1.8 3.8E-05 51.4 10.9 45 157-207 117-161 (702)
308 PRK14721 flhF flagellar biosyn 90.4 5.6 0.00012 45.0 14.5 55 158-216 269-324 (420)
309 KOG0739 AAA+-type ATPase [Post 90.4 2.8 6.1E-05 44.8 11.2 120 48-213 156-287 (439)
310 PRK08533 flagellar accessory p 90.3 5.2 0.00011 41.4 13.4 51 52-103 23-76 (230)
311 TIGR03420 DnaA_homol_Hda DnaA 90.3 1.4 3E-05 44.8 9.0 20 52-71 37-56 (226)
312 PHA02542 41 41 helicase; Provi 90.2 2.3 5E-05 48.9 11.6 42 44-85 176-225 (473)
313 COG1474 CDC6 Cdc6-related prot 90.2 4.6 9.9E-05 44.9 13.6 18 54-71 43-60 (366)
314 KOG2028 ATPase related to the 90.2 1.5 3.2E-05 48.0 9.2 47 28-75 135-184 (554)
315 PRK00771 signal recognition pa 90.2 6.1 0.00013 45.0 14.7 47 159-209 176-223 (437)
316 PRK06904 replicative DNA helic 90.0 4.4 9.4E-05 46.7 13.6 145 54-201 222-382 (472)
317 PRK05642 DNA replication initi 90.0 1.6 3.5E-05 45.2 9.3 16 54-69 46-61 (234)
318 PRK14952 DNA polymerase III su 89.9 2.2 4.9E-05 50.2 11.4 49 157-211 117-165 (584)
319 PRK08691 DNA polymerase III su 89.9 2.6 5.7E-05 50.3 11.8 20 55-74 40-59 (709)
320 PRK05896 DNA polymerase III su 89.9 2.6 5.7E-05 49.6 11.8 45 158-208 119-163 (605)
321 TIGR03877 thermo_KaiC_1 KaiC d 89.8 0.35 7.5E-06 50.2 4.2 51 53-104 21-74 (237)
322 PRK13822 conjugal transfer cou 89.8 0.36 7.8E-06 57.4 4.7 57 54-110 225-282 (641)
323 cd01121 Sms Sms (bacterial rad 89.7 2.5 5.5E-05 47.1 11.0 56 46-102 70-133 (372)
324 PRK09111 DNA polymerase III su 89.6 3.3 7.1E-05 49.1 12.4 20 55-74 48-67 (598)
325 TIGR00580 mfd transcription-re 89.6 0.72 1.6E-05 57.1 7.3 76 258-333 500-580 (926)
326 CHL00176 ftsH cell division pr 89.2 4 8.6E-05 48.8 12.8 21 54-74 217-237 (638)
327 PRK14086 dnaA chromosomal repl 89.1 2.6 5.7E-05 49.7 11.0 41 55-95 316-360 (617)
328 PRK11823 DNA repair protein Ra 89.1 2.7 5.8E-05 48.0 10.9 57 46-103 68-132 (446)
329 PRK07133 DNA polymerase III su 89.1 1.6 3.5E-05 52.4 9.4 46 156-207 116-161 (725)
330 PRK05636 replicative DNA helic 89.0 2.9 6.3E-05 48.5 11.3 113 56-172 268-389 (505)
331 PTZ00454 26S protease regulato 88.9 3.5 7.5E-05 46.4 11.5 22 53-74 179-200 (398)
332 PF05876 Terminase_GpA: Phage 88.9 1.2 2.6E-05 52.3 8.2 63 38-100 16-85 (557)
333 PRK08006 replicative DNA helic 88.9 4 8.7E-05 46.9 12.3 143 55-201 226-384 (471)
334 PRK12402 replication factor C 88.9 4.3 9.4E-05 43.9 12.1 18 55-72 38-55 (337)
335 PRK14955 DNA polymerase III su 88.9 2.8 6.1E-05 47.1 10.8 19 55-73 40-58 (397)
336 TIGR02767 TraG-Ti Ti-type conj 88.9 0.48 1E-05 56.1 4.9 56 54-109 212-269 (623)
337 PRK14969 DNA polymerase III su 88.8 2.5 5.5E-05 49.3 10.7 20 55-74 40-59 (527)
338 TIGR00064 ftsY signal recognit 88.6 12 0.00027 39.7 15.0 49 55-103 74-128 (272)
339 COG0464 SpoVK ATPases of the A 88.6 3.2 6.9E-05 47.9 11.3 147 14-209 238-392 (494)
340 PRK06871 DNA polymerase III su 88.6 1.7 3.7E-05 47.4 8.5 53 155-213 104-156 (325)
341 PRK06995 flhF flagellar biosyn 88.5 17 0.00036 42.0 16.7 55 158-216 334-389 (484)
342 PRK06964 DNA polymerase III su 88.4 3.2 6.9E-05 45.7 10.6 52 156-213 130-181 (342)
343 PRK08939 primosomal protein Dn 88.4 1.5 3.3E-05 47.4 8.0 17 53-69 156-172 (306)
344 TIGR01425 SRP54_euk signal rec 88.4 8.6 0.00019 43.6 14.1 45 56-100 103-152 (429)
345 PRK10919 ATP-dependent DNA hel 88.3 0.91 2E-05 54.5 6.8 62 38-101 2-70 (672)
346 PRK08506 replicative DNA helic 88.2 2.6 5.7E-05 48.5 10.2 144 55-202 194-351 (472)
347 PRK12726 flagellar biosynthesi 88.2 9.1 0.0002 42.8 13.8 54 157-214 284-338 (407)
348 PF05127 Helicase_RecD: Helica 88.2 0.42 9.2E-06 47.5 3.3 116 57-204 1-124 (177)
349 TIGR01241 FtsH_fam ATP-depende 88.2 3 6.5E-05 48.2 10.8 20 54-73 89-108 (495)
350 TIGR00665 DnaB replicative DNA 88.0 3.1 6.8E-05 47.1 10.6 116 54-172 196-319 (434)
351 PF13481 AAA_25: AAA domain; P 87.9 4.5 9.6E-05 40.0 10.5 118 52-179 31-162 (193)
352 PRK07940 DNA polymerase III su 87.9 5.4 0.00012 44.8 12.2 51 156-212 115-165 (394)
353 PRK14088 dnaA chromosomal repl 87.9 4.8 0.0001 45.9 11.9 18 54-71 131-148 (440)
354 PRK13876 conjugal transfer cou 87.9 0.48 1E-05 56.5 4.0 49 54-102 145-194 (663)
355 PRK00440 rfc replication facto 87.8 5.1 0.00011 42.9 11.6 18 55-72 40-57 (319)
356 PRK04328 hypothetical protein; 87.7 0.65 1.4E-05 48.7 4.5 51 52-103 22-75 (249)
357 PRK10867 signal recognition pa 87.6 16 0.00035 41.6 15.8 49 56-104 103-158 (433)
358 PRK14723 flhF flagellar biosyn 87.6 11 0.00024 45.7 15.1 54 159-216 264-318 (767)
359 PRK10689 transcription-repair 87.4 1.2 2.5E-05 56.6 7.2 76 257-332 648-728 (1147)
360 PRK14087 dnaA chromosomal repl 87.4 4.6 9.9E-05 46.2 11.4 44 54-98 142-190 (450)
361 KOG1513 Nuclear helicase MOP-3 87.4 0.47 1E-05 56.0 3.4 165 37-206 263-457 (1300)
362 TIGR00959 ffh signal recogniti 87.4 13 0.00028 42.3 14.9 50 56-105 102-158 (428)
363 PRK14957 DNA polymerase III su 87.4 3.6 7.8E-05 48.1 10.7 20 55-74 40-59 (546)
364 TIGR01243 CDC48 AAA family ATP 87.3 3.4 7.3E-05 50.3 10.9 31 54-84 488-518 (733)
365 PRK06090 DNA polymerase III su 87.3 2.3 5.1E-05 46.3 8.6 52 156-213 106-157 (319)
366 TIGR01075 uvrD DNA helicase II 87.3 1 2.3E-05 54.5 6.5 63 37-101 3-72 (715)
367 PRK11773 uvrD DNA-dependent he 87.2 0.8 1.7E-05 55.5 5.5 63 37-101 8-77 (721)
368 PRK14963 DNA polymerase III su 87.2 2.5 5.4E-05 49.0 9.2 17 56-72 39-55 (504)
369 PRK14953 DNA polymerase III su 87.1 5.7 0.00012 45.9 12.1 19 56-74 41-59 (486)
370 COG1200 RecG RecG-like helicas 87.0 2.2 4.7E-05 50.3 8.4 77 257-333 310-391 (677)
371 PRK11034 clpA ATP-dependent Cl 86.9 4.4 9.5E-05 49.3 11.4 20 53-72 207-226 (758)
372 COG1222 RPT1 ATP-dependent 26S 86.8 4.8 0.00011 44.1 10.4 77 12-92 145-223 (406)
373 TIGR03499 FlhF flagellar biosy 86.8 3.1 6.8E-05 44.4 9.2 18 54-71 195-212 (282)
374 KOG0733 Nuclear AAA ATPase (VC 86.8 5.1 0.00011 46.7 11.1 56 14-72 186-242 (802)
375 PRK13833 conjugal transfer pro 86.8 1.7 3.7E-05 47.4 7.2 52 39-90 129-186 (323)
376 COG0470 HolB ATPase involved i 86.7 2.6 5.6E-05 45.2 8.6 47 157-209 108-154 (325)
377 PRK06321 replicative DNA helic 86.7 5.1 0.00011 46.1 11.3 154 46-202 215-388 (472)
378 cd01128 rho_factor Transcripti 86.6 3.7 7.9E-05 43.2 9.3 21 50-70 13-33 (249)
379 PRK09354 recA recombinase A; P 86.6 3.6 7.9E-05 45.3 9.6 96 46-171 47-151 (349)
380 PF13177 DNA_pol3_delta2: DNA 86.5 4.5 9.8E-05 39.4 9.4 51 157-213 101-151 (162)
381 PHA03333 putative ATPase subun 86.5 10 0.00022 45.2 13.5 152 43-207 177-336 (752)
382 TIGR01243 CDC48 AAA family ATP 86.2 4.5 9.7E-05 49.2 11.2 20 53-72 212-231 (733)
383 COG2255 RuvB Holliday junction 86.2 1.5 3.2E-05 46.7 6.0 46 29-74 24-73 (332)
384 PRK09112 DNA polymerase III su 86.2 12 0.00025 41.5 13.4 45 156-206 139-183 (351)
385 PHA03368 DNA packaging termina 86.2 7.2 0.00016 46.3 12.1 74 24-101 229-307 (738)
386 PF01695 IstB_IS21: IstB-like 86.1 1.1 2.4E-05 44.5 4.9 42 52-93 46-89 (178)
387 KOG0729 26S proteasome regulat 85.8 7 0.00015 41.2 10.6 77 14-93 173-250 (435)
388 KOG1133 Helicase of the DEAD s 85.8 1 2.2E-05 52.8 4.9 38 38-75 15-56 (821)
389 PTZ00361 26 proteosome regulat 85.6 5.1 0.00011 45.6 10.5 22 53-74 217-238 (438)
390 PRK07004 replicative DNA helic 85.6 4.6 9.9E-05 46.4 10.2 144 54-202 214-373 (460)
391 cd03115 SRP The signal recogni 85.6 21 0.00045 34.7 13.7 30 56-85 3-35 (173)
392 PRK14965 DNA polymerase III su 85.6 5.3 0.00011 47.2 11.0 50 156-211 117-166 (576)
393 PRK14950 DNA polymerase III su 85.4 5.6 0.00012 47.1 11.1 19 55-73 40-58 (585)
394 KOG0734 AAA+-type ATPase conta 85.3 8 0.00017 44.5 11.5 63 147-209 385-453 (752)
395 cd00983 recA RecA is a bacter 85.2 4.1 8.8E-05 44.5 9.1 96 46-171 42-146 (325)
396 COG4962 CpaF Flp pilus assembl 85.2 1.7 3.7E-05 47.4 6.1 60 32-91 151-213 (355)
397 COG1484 DnaC DNA replication p 85.1 1.9 4.2E-05 45.4 6.4 46 52-97 104-151 (254)
398 TIGR01074 rep ATP-dependent DN 85.1 1.9 4E-05 51.8 7.1 60 39-100 2-68 (664)
399 PRK11054 helD DNA helicase IV; 85.0 2.5 5.3E-05 50.9 8.0 62 37-100 195-263 (684)
400 PRK14701 reverse gyrase; Provi 85.0 2.4 5.3E-05 55.5 8.4 63 257-319 121-189 (1638)
401 TIGR02639 ClpA ATP-dependent C 85.0 7.3 0.00016 47.4 12.1 18 54-71 204-221 (731)
402 PRK07993 DNA polymerase III su 84.7 3 6.4E-05 45.8 7.8 53 155-213 105-157 (334)
403 KOG0339 ATP-dependent RNA heli 84.7 4.9 0.00011 45.7 9.4 68 261-332 299-376 (731)
404 TIGR02012 tigrfam_recA protein 84.5 4.4 9.6E-05 44.2 9.0 96 46-171 42-146 (321)
405 TIGR00767 rho transcription te 84.5 3.4 7.4E-05 46.3 8.2 22 51-72 166-187 (415)
406 COG1223 Predicted ATPase (AAA+ 84.5 7.8 0.00017 40.9 10.1 38 54-93 152-190 (368)
407 CHL00181 cbbX CbbX; Provisiona 84.4 5.7 0.00012 42.6 9.7 21 53-73 59-79 (287)
408 PRK03992 proteasome-activating 84.4 7.5 0.00016 43.6 11.1 21 54-74 166-186 (389)
409 PF10593 Z1: Z1 domain; Inter 84.3 5.6 0.00012 41.6 9.3 89 282-375 110-203 (239)
410 PRK06749 replicative DNA helic 84.2 11 0.00024 42.8 12.4 33 55-87 188-223 (428)
411 TIGR03880 KaiC_arch_3 KaiC dom 83.9 11 0.00024 38.4 11.4 51 53-104 16-69 (224)
412 PRK13880 conjugal transfer cou 83.8 0.73 1.6E-05 54.9 2.9 55 54-108 176-232 (636)
413 TIGR00635 ruvB Holliday juncti 83.8 3.2 7E-05 44.4 7.6 19 54-72 31-49 (305)
414 PRK13894 conjugal transfer ATP 83.7 2.1 4.6E-05 46.6 6.2 52 39-90 133-190 (319)
415 cd00268 DEADc DEAD-box helicas 83.6 5 0.00011 39.9 8.5 71 257-331 68-148 (203)
416 PHA00350 putative assembly pro 83.5 7.3 0.00016 43.7 10.3 24 56-79 4-31 (399)
417 KOG0738 AAA+-type ATPase [Post 83.4 12 0.00026 41.6 11.5 17 54-70 246-262 (491)
418 PRK14954 DNA polymerase III su 83.4 6.9 0.00015 46.5 10.7 42 156-203 125-166 (620)
419 KOG0347 RNA helicase [RNA proc 83.3 3.6 7.9E-05 47.2 7.8 53 260-316 265-321 (731)
420 TIGR03345 VI_ClpV1 type VI sec 83.3 8.7 0.00019 47.5 11.9 16 56-71 599-614 (852)
421 TIGR00678 holB DNA polymerase 83.2 13 0.00028 36.8 11.1 23 48-70 6-31 (188)
422 COG0630 VirB11 Type IV secreto 83.1 6.3 0.00014 42.8 9.5 54 37-90 126-182 (312)
423 KOG0733 Nuclear AAA ATPase (VC 83.1 9.8 0.00021 44.5 11.1 59 11-70 504-562 (802)
424 TIGR02782 TrbB_P P-type conjug 83.1 3.7 8.1E-05 44.3 7.7 52 39-90 117-174 (299)
425 PRK08699 DNA polymerase III su 82.7 6.9 0.00015 42.8 9.7 33 40-72 3-40 (325)
426 PF01443 Viral_helicase1: Vira 82.7 1.9 4.1E-05 44.0 5.1 14 56-69 1-14 (234)
427 TIGR02397 dnaX_nterm DNA polym 82.7 11 0.00025 41.0 11.5 17 55-71 38-54 (355)
428 TIGR02640 gas_vesic_GvpN gas v 82.6 2.2 4.8E-05 45.0 5.7 40 45-84 13-52 (262)
429 TIGR03346 chaperone_ClpB ATP-d 82.6 9.6 0.00021 47.2 11.9 18 54-71 195-212 (852)
430 PRK00080 ruvB Holliday junctio 82.6 2.5 5.4E-05 46.1 6.2 21 54-74 52-72 (328)
431 COG2804 PulE Type II secretory 82.4 2.4 5.2E-05 48.4 6.0 31 39-69 242-274 (500)
432 PRK07773 replicative DNA helic 82.4 6.6 0.00014 48.8 10.5 145 55-203 219-377 (886)
433 TIGR01242 26Sp45 26S proteasom 82.0 2.7 5.9E-05 46.5 6.3 21 54-74 157-177 (364)
434 PRK14971 DNA polymerase III su 82.0 5.3 0.00012 47.5 9.1 49 157-211 120-168 (614)
435 TIGR01073 pcrA ATP-dependent D 81.7 2.7 5.9E-05 51.0 6.7 63 37-101 3-72 (726)
436 PRK09302 circadian clock prote 81.7 6.6 0.00014 45.6 9.6 101 53-171 273-376 (509)
437 TIGR02785 addA_Gpos recombinat 81.4 3.8 8.2E-05 52.8 8.1 61 38-100 1-67 (1232)
438 COG3598 RepA RecA-family ATPas 81.2 6.4 0.00014 42.6 8.3 47 40-86 75-135 (402)
439 PRK09376 rho transcription ter 81.1 6.2 0.00013 44.2 8.5 20 51-70 167-186 (416)
440 PRK10865 protein disaggregatio 81.1 10 0.00022 47.1 11.3 18 54-71 200-217 (857)
441 PRK13851 type IV secretion sys 81.0 2.3 4.9E-05 46.9 5.2 42 50-91 159-202 (344)
442 COG1219 ClpX ATP-dependent pro 80.8 1.2 2.7E-05 47.9 2.9 20 54-73 98-117 (408)
443 COG0556 UvrB Helicase subunit 80.8 22 0.00047 41.1 12.6 122 77-212 445-566 (663)
444 TIGR00416 sms DNA repair prote 80.6 9.4 0.0002 43.7 10.1 58 45-103 81-146 (454)
445 PRK13900 type IV secretion sys 80.1 2.5 5.5E-05 46.3 5.2 41 50-90 157-199 (332)
446 PRK11634 ATP-dependent RNA hel 80.0 4.8 0.0001 48.1 7.8 71 258-332 74-155 (629)
447 TIGR02237 recomb_radB DNA repa 80.0 8.4 0.00018 38.7 8.6 35 53-87 12-49 (209)
448 cd01130 VirB11-like_ATPase Typ 79.7 2.5 5.5E-05 42.0 4.6 34 37-70 8-42 (186)
449 KOG0737 AAA+-type ATPase [Post 79.4 9.8 0.00021 41.9 9.2 64 13-76 87-150 (386)
450 CHL00195 ycf46 Ycf46; Provisio 79.3 11 0.00024 43.6 10.1 19 54-72 260-278 (489)
451 KOG0991 Replication factor C, 79.1 3.6 7.7E-05 42.6 5.4 21 54-74 49-69 (333)
452 TIGR01054 rgy reverse gyrase. 79.0 3.3 7.1E-05 52.9 6.3 77 258-334 121-207 (1171)
453 smart00510 TFS2M Domain in the 78.9 3.5 7.7E-05 37.2 4.8 76 550-627 1-76 (102)
454 COG1609 PurR Transcriptional r 78.6 1.1E+02 0.0023 33.5 17.5 42 243-284 221-262 (333)
455 PRK10733 hflB ATP-dependent me 78.5 11 0.00025 45.1 10.3 36 550-585 543-578 (644)
456 COG0593 DnaA ATPase involved i 78.4 17 0.00037 41.0 11.0 16 54-69 114-129 (408)
457 PRK06647 DNA polymerase III su 78.2 16 0.00034 43.1 11.2 19 55-73 40-58 (563)
458 KOG1001 Helicase-like transcri 78.0 0.49 1.1E-05 56.4 -1.3 118 243-360 521-643 (674)
459 COG3973 Superfamily I DNA and 77.8 4.6 0.0001 47.0 6.4 82 24-107 192-289 (747)
460 PRK05986 cob(I)alamin adenolsy 77.8 18 0.00039 36.5 10.0 55 151-208 108-162 (191)
461 TIGR00614 recQ_fam ATP-depende 77.6 4.9 0.00011 46.1 6.8 74 259-332 52-133 (470)
462 KOG1513 Nuclear helicase MOP-3 77.4 3.5 7.6E-05 49.1 5.4 63 301-363 850-923 (1300)
463 KOG2543 Origin recognition com 77.4 14 0.00029 41.1 9.5 60 159-223 116-175 (438)
464 PF05673 DUF815: Protein of un 77.3 19 0.00041 37.7 10.2 91 48-138 44-148 (249)
465 CHL00095 clpC Clp protease ATP 77.3 14 0.00031 45.6 11.0 32 41-72 185-219 (821)
466 PF05729 NACHT: NACHT domain 77.2 13 0.00027 35.2 8.6 15 56-70 3-17 (166)
467 cd00561 CobA_CobO_BtuR ATP:cor 76.7 26 0.00057 34.3 10.5 53 151-206 88-140 (159)
468 COG3267 ExeA Type II secretory 76.4 16 0.00034 38.5 9.2 38 50-87 47-87 (269)
469 PRK04841 transcriptional regul 76.0 38 0.00083 41.9 14.5 33 52-85 31-63 (903)
470 PF00437 T2SE: Type II/IV secr 76.0 2.6 5.7E-05 44.4 3.7 40 51-90 125-167 (270)
471 TIGR02238 recomb_DMC1 meiotic 75.9 12 0.00025 40.8 8.7 43 46-88 84-140 (313)
472 TIGR00708 cobA cob(I)alamin ad 75.9 43 0.00093 33.3 11.9 55 151-208 90-144 (173)
473 cd01129 PulE-GspE PulE/GspE Th 75.9 5.9 0.00013 41.9 6.3 32 39-70 64-97 (264)
474 KOG0740 AAA+-type ATPase [Post 75.9 15 0.00031 41.6 9.5 63 151-213 238-308 (428)
475 PRK09519 recA DNA recombinatio 75.7 14 0.00029 45.1 9.9 118 24-171 12-151 (790)
476 PLN00020 ribulose bisphosphate 75.2 4.7 0.0001 44.7 5.4 31 55-85 150-180 (413)
477 PF01637 Arch_ATPase: Archaeal 75.2 6.6 0.00014 39.4 6.3 16 54-69 21-36 (234)
478 PF06733 DEAD_2: DEAD_2; Inte 75.2 2.3 5.1E-05 41.7 2.9 44 128-173 117-160 (174)
479 PRK08058 DNA polymerase III su 75.1 23 0.0005 38.7 10.9 51 156-212 108-158 (329)
480 PRK08451 DNA polymerase III su 74.8 16 0.00035 42.7 9.9 41 157-203 116-156 (535)
481 COG1435 Tdk Thymidine kinase [ 74.7 6.7 0.00014 39.6 5.9 34 56-89 7-43 (201)
482 KOG1806 DEAD box containing he 74.7 4.3 9.2E-05 49.7 5.2 70 37-106 737-811 (1320)
483 PRK07471 DNA polymerase III su 74.5 37 0.0008 37.8 12.3 43 157-205 140-182 (365)
484 PLN03187 meiotic recombination 74.4 11 0.00024 41.5 8.1 42 47-88 115-170 (344)
485 COG4185 Uncharacterized protei 74.0 9.4 0.0002 37.4 6.4 37 56-93 5-41 (187)
486 TIGR01389 recQ ATP-dependent D 73.6 7.3 0.00016 46.1 7.0 73 259-331 54-132 (591)
487 TIGR02655 circ_KaiC circadian 73.3 14 0.00031 42.6 9.0 52 52-104 20-75 (484)
488 CHL00095 clpC Clp protease ATP 73.1 3.5 7.6E-05 50.8 4.3 31 41-71 512-557 (821)
489 TIGR01547 phage_term_2 phage t 72.8 18 0.00039 40.4 9.5 35 56-90 4-44 (396)
490 CHL00206 ycf2 Ycf2; Provisiona 72.6 13 0.00027 49.2 8.9 58 148-209 1722-1786(2281)
491 TIGR01420 pilT_fam pilus retra 72.6 12 0.00026 41.2 7.9 18 53-70 122-139 (343)
492 PF12846 AAA_10: AAA-like doma 72.1 4.6 9.9E-05 42.5 4.4 36 54-89 2-40 (304)
493 KOG0727 26S proteasome regulat 71.8 25 0.00055 36.9 9.3 16 54-69 190-205 (408)
494 TIGR00602 rad24 checkpoint pro 71.8 21 0.00046 42.6 10.1 19 55-73 112-130 (637)
495 cd01394 radB RadB. The archaea 71.6 15 0.00033 37.1 7.9 40 46-85 7-54 (218)
496 cd01125 repA Hexameric Replica 71.4 21 0.00045 36.9 9.0 30 56-85 4-48 (239)
497 PLN02483 serine palmitoyltrans 71.2 78 0.0017 36.6 14.5 146 22-175 120-286 (489)
498 cd06281 PBP1_LacI_like_5 Ligan 71.1 94 0.002 31.9 14.0 40 244-284 162-201 (269)
499 TIGR02688 conserved hypothetic 71.1 9.2 0.0002 43.3 6.5 49 23-71 172-227 (449)
500 PF13671 AAA_33: AAA domain; P 71.1 24 0.00051 32.8 8.6 17 56-72 2-18 (143)
No 1
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.4e-88 Score=704.63 Aligned_cols=428 Identities=39% Similarity=0.722 Sum_probs=392.0
Q ss_pred hHHHHHHHHHHcCCCCCC-HHHHHHHHHHHcC-CcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHH
Q 004900 23 KEALVKLLRWHFGHAQFR-DKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 23 ~~~l~~~L~~~fG~~~lr-~~Q~eaI~ail~g-~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
...+..+|+++||++.|. +.|+.|+.++.++ +||.|+||||+|||||||||+|..++++||++|+++|+.||+++|..
T Consensus 4 Er~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~ 83 (641)
T KOG0352|consen 4 ERKVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKR 83 (641)
T ss_pred HHHHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHh
Confidence 456889999999999998 8999999999977 69999999999999999999999999999999999999999999999
Q ss_pred cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHH
Q 004900 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPS 180 (724)
Q Consensus 101 ~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~ 180 (724)
+.+++..+++.++..++..+..++....+.+++||+|||+.+|.+|...|..+.+...|.+||||||||+++|||||||+
T Consensus 84 LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPD 163 (641)
T KOG0352|consen 84 LKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPD 163 (641)
T ss_pred cCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCe-EeeccCCCCceEEEEEeccchhhHHHHHHHHHHhc---
Q 004900 181 YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL-VLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN--- 256 (724)
Q Consensus 181 y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~-vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~--- 256 (724)
|..|+.++..++++|+++||||++++|+.||...|.+.+|+ ++..+..|.|++|.+..+....+-+..|.++-...
T Consensus 164 YL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~ 243 (641)
T KOG0352|consen 164 YLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGK 243 (641)
T ss_pred hhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999998 56778899999999999988888888888765331
Q ss_pred ----------CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCC
Q 004900 257 ----------GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (724)
Q Consensus 257 ----------~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~ 326 (724)
..+++||||+||+.||++|-.|...|+++.+||+|+...+|..|+++|++++++||+||..||||||+|+
T Consensus 244 ~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~ 323 (641)
T KOG0352|consen 244 HEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPD 323 (641)
T ss_pred hhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcc
Confidence 1368999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhccCCCCCcchhhHhhhhhhhhhHHHHHHhh
Q 004900 327 VRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYC 406 (724)
Q Consensus 327 V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~ 406 (724)
||+||||++|.++..|||++|||||||.+++|-+||+.+|...+.++++....+ .+.-...+...+..+..|..|++||
T Consensus 324 VRFViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~ak-lrek~~ke~~~k~~I~~F~k~~eFC 402 (641)
T KOG0352|consen 324 VRFVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAK-LREKAKKEMQIKSIITGFAKMLEFC 402 (641)
T ss_pred eeEEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHH-HHHhcchhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998865432 1122223334456777899999999
Q ss_pred hccCcchhcchhhcCCCCCCCCcCCCCCCCCCchHHHHHHHHHHHHH
Q 004900 407 EGSGCRRKKILESFGEQIPVSLCKNSCDACKHPNLLAKYLGELTSAV 453 (724)
Q Consensus 407 e~~~Crr~~ll~~fge~~~~~~c~~~CD~C~~~~~~~~~l~~l~~~~ 453 (724)
|..+|||..|..|||+..+ .|..+||.|..|....+.++.+....
T Consensus 403 E~~~CRH~~ia~fFgD~~p--~ckg~cd~c~~p~k~~r~~e~f~~s~ 447 (641)
T KOG0352|consen 403 ESARCRHVSIASFFDDTEC--PCKTNCDYCRDPTKTIRNVEAFINSE 447 (641)
T ss_pred HHcccchHHHHHhcCCCCC--CCCCCccccCCHHHHHHHHHHHHHhh
Confidence 9999999999999999877 48889999997776666666555543
No 2
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.8e-84 Score=725.42 Aligned_cols=401 Identities=46% Similarity=0.813 Sum_probs=368.6
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCC
Q 004900 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi 103 (724)
+.+...|+++||+..||+.|.++|.++++|+|+++++|||+|||+|||+|++...|.||||+|+++||.||+++++..|+
T Consensus 3 ~~~~~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi 82 (590)
T COG0514 3 EEAQQVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGI 82 (590)
T ss_pred hHHHHHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCc
Confidence 35567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHH
Q 004900 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (724)
Q Consensus 104 ~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~ 183 (724)
.++.+++..+..++..++..+..+. +++||.+||.+.++.|++.+. ...+.+||||||||+++|||||||+|.+
T Consensus 83 ~A~~lnS~l~~~e~~~v~~~l~~g~--~klLyisPErl~~~~f~~~L~----~~~i~l~vIDEAHCiSqWGhdFRP~Y~~ 156 (590)
T COG0514 83 RAAYLNSTLSREERQQVLNQLKSGQ--LKLLYISPERLMSPRFLELLK----RLPISLVAIDEAHCISQWGHDFRPDYRR 156 (590)
T ss_pred eeehhhcccCHHHHHHHHHHHhcCc--eeEEEECchhhcChHHHHHHH----hCCCceEEechHHHHhhcCCccCHhHHH
Confidence 9999999999999999999998875 999999999999998888776 4559999999999999999999999999
Q ss_pred HHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEE
Q 004900 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIV 263 (724)
Q Consensus 184 L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~II 263 (724)
|+.++..+|++|+++||||+++.++.||.+.|++..+.++..+++||||+|.++.+......+.-+.+ +......++||
T Consensus 157 lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~-~~~~~~~~GII 235 (590)
T COG0514 157 LGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLAT-VLPQLSKSGII 235 (590)
T ss_pred HHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHh-hccccCCCeEE
Confidence 99999999999999999999999999999999999999999999999999999987632333332222 12456678999
Q ss_pred EecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHH
Q 004900 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (724)
Q Consensus 264 f~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yi 343 (724)
||.||+.++.+++.|...|+.+..|||||+.++|..++++|..++++|||||.|||||||+||||+||||++|.|+++||
T Consensus 236 Yc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYy 315 (590)
T COG0514 236 YCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYY 315 (590)
T ss_pred EEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCCCCCCCeEEEEEccccHHHHHHHHHhccCCCCCcchhhHhhhhhhhhhHHHHHHhhhccCcchhcchhhcCCC
Q 004900 344 QESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQ 423 (724)
Q Consensus 344 Qr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~e~~~Crr~~ll~~fge~ 423 (724)
|++|||||||.++.|+++|++.|....+++++...+ ..+..+.....+.+|..||++..|||..++.||||.
T Consensus 316 QE~GRAGRDG~~a~aill~~~~D~~~~~~~i~~~~~--------~~~~~~~~~~kl~~~~~~~e~~~crr~~ll~yfge~ 387 (590)
T COG0514 316 QETGRAGRDGLPAEAILLYSPEDIRWQRYLIEQSKP--------DEEQKQIELAKLRQMIAYCETQTCRRLVLLKYFGED 387 (590)
T ss_pred HHHhhccCCCCcceEEEeeccccHHHHHHHHHhhcc--------hHHHHHHHHHHHHHHHHhcccccchHHHHHHhcCcc
Confidence 999999999999999999999999998888876543 234445667789999999999999999999999998
Q ss_pred CCCCCcCCCCCCCCCchH
Q 004900 424 IPVSLCKNSCDACKHPNL 441 (724)
Q Consensus 424 ~~~~~c~~~CD~C~~~~~ 441 (724)
.+..|.. ||+|.++..
T Consensus 388 -~~~~c~~-c~~c~~~~~ 403 (590)
T COG0514 388 -EPEPCGN-CDNCLDTPK 403 (590)
T ss_pred -ccccccC-CCcccCcch
Confidence 6678986 999998765
No 3
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=9.8e-81 Score=732.69 Aligned_cols=435 Identities=48% Similarity=0.810 Sum_probs=392.0
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcC
Q 004900 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (724)
Q Consensus 23 ~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~g 102 (724)
.++....+...||+..||+.|.++|.+++.|+|++|.||||+||++|||||++..++.+|||+|+++||+||+..|...+
T Consensus 249 t~~~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~ 328 (941)
T KOG0351|consen 249 TKELELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKG 328 (941)
T ss_pred chHHHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcC
Confidence 34688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhH-HHHHHhhhhcCCccEEEEccccccccCCCCChHHH
Q 004900 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (724)
Q Consensus 103 i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~-l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y 181 (724)
|++.++++.+....+..++..+..+.+.++|+|+|||.+...+. ...+..+...+.+.++|||||||+++|||||||+|
T Consensus 329 I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Y 408 (941)
T KOG0351|consen 329 IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSY 408 (941)
T ss_pred cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHH
Confidence 99999999999999999999999998889999999998877654 44567777777799999999999999999999999
Q ss_pred HHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceE
Q 004900 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCA 261 (724)
Q Consensus 182 ~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~ 261 (724)
+.|+.++..+|.+|+|+||||+++.++.||++.|++.++.++..+++|+|++|.|..+...+..+..+...-..+++.++
T Consensus 409 k~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~ 488 (941)
T KOG0351|consen 409 KRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSG 488 (941)
T ss_pred HHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCe
Confidence 99999999999999999999999999999999999999999999999999999999887534444444444455678899
Q ss_pred EEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHH
Q 004900 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEA 341 (724)
Q Consensus 262 IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~ 341 (724)
||||.++++|+.++..|+..|+.+..||+||++.+|..|++.|..++++|+|||.|||||||+||||+||||++|+|++.
T Consensus 489 IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~ 568 (941)
T KOG0351|consen 489 IIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEG 568 (941)
T ss_pred EEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhccCCCCCcchhhHhhhh-hhhhhHHHHHHhhhc-cCcchhcchhh
Q 004900 342 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSK-KSISDFSQMVDYCEG-SGCRRKKILES 419 (724)
Q Consensus 342 yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~l~~m~~~~e~-~~Crr~~ll~~ 419 (724)
|||++|||||||.++.|++||+..|...++.++..... .. ...+ ....++.+|+.||++ +.|||+.++.|
T Consensus 569 YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ll~s~~~-~~-------~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~ 640 (941)
T KOG0351|consen 569 YYQEAGRAGRDGLPSSCVLLYGYADISELRRLLTSGNR-LS-------GVKKFTRLLELVQVVTYCENETDCRRKQILEY 640 (941)
T ss_pred HHHhccccCcCCCcceeEEecchhHHHHHHHHHHcccc-cc-------chhhccchhhHHHHHHhhcCccchhHHHHHHh
Confidence 99999999999999999999999999999999987611 11 1112 456789999999995 79999999999
Q ss_pred cCCCCCCCCcC--CCCCCCCCchHHHHHHHHHHHHHhhcCCCcceeec
Q 004900 420 FGEQIPVSLCK--NSCDACKHPNLLAKYLGELTSAVLQKNHFSQIFIS 465 (724)
Q Consensus 420 fge~~~~~~c~--~~CD~C~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 465 (724)
||+.+....|. +.||+|.+...+.-.+.+++...........++..
T Consensus 641 fge~f~~~~c~~~k~cd~C~~~~dv~~~~~d~~~~~~~~~~~v~~~~~ 688 (941)
T KOG0351|consen 641 FGEEFDSKHCKKHKTCDNCRESLDVAYELRDVTLTALDAHPLVTIYTL 688 (941)
T ss_pred cccccchhhccCCchHHHhhcccccchHHHHHHHHHHHHhhhheeeec
Confidence 99999888999 79999999887776677766655444444444443
No 4
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=8.1e-78 Score=706.89 Aligned_cols=422 Identities=41% Similarity=0.726 Sum_probs=373.5
Q ss_pred CCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHH
Q 004900 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIG 97 (724)
Q Consensus 18 ~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~ 97 (724)
..+++...+...++.+||+..|||+|.++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++||.||+..
T Consensus 440 ~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 440 RNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred cCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChh-HHHHHHhhhhcCCccEEEEccccccccCCCC
Q 004900 98 LKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHD 176 (724)
Q Consensus 98 l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~-~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~d 176 (724)
+...|+++..+.++........++..+......++|+|+|||.+.... ++..+..+.....+.+||||||||+++|||+
T Consensus 520 L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhD 599 (1195)
T PLN03137 520 LLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHD 599 (1195)
T ss_pred HHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccc
Confidence 999999999999998888777777776654456899999999988754 4555555555667999999999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhc
Q 004900 177 FRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN 256 (724)
Q Consensus 177 Frp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~ 256 (724)
|||+|..|+.++..+|++|+++||||+++.+..+|...|++.++.++..+++|||++|.+..+. ......+..++...
T Consensus 600 FRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~--kk~le~L~~~I~~~ 677 (1195)
T PLN03137 600 FRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKT--KKCLEDIDKFIKEN 677 (1195)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccc--hhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999988653 23345677777643
Q ss_pred -CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCC
Q 004900 257 -GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI 335 (724)
Q Consensus 257 -~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~ 335 (724)
.+.++||||.|++.|+.++..|...|+.+..|||+|++++|..++++|.+|+++|||||++||||||+|+|++||||++
T Consensus 678 ~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydl 757 (1195)
T PLN03137 678 HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSL 757 (1195)
T ss_pred ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCC
Confidence 3568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhccCCCCC------cchhhHhhhhhhhhhHHHHHHhhhcc
Q 004900 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQ------SFSTRERSSKKSISDFSQMVDYCEGS 409 (724)
Q Consensus 336 P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~l~~m~~~~e~~ 409 (724)
|.|++.|+||+|||||+|.++.|++||+..|...+++++......... ..+......+..++.|.+|+.||++.
T Consensus 758 PkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~ 837 (1195)
T PLN03137 758 PKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENE 837 (1195)
T ss_pred CCCHHHHHhhhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhCh
Confidence 999999999999999999999999999999999999998754322110 00111122345667899999999996
Q ss_pred -CcchhcchhhcCCCCCCCCcCCCCCCCCCchH
Q 004900 410 -GCRRKKILESFGEQIPVSLCKNSCDACKHPNL 441 (724)
Q Consensus 410 -~Crr~~ll~~fge~~~~~~c~~~CD~C~~~~~ 441 (724)
.|||+.||.||||.+....|+..||+|..+..
T Consensus 838 ~~CRR~~lL~yFGE~~~~~~C~~~CDnC~~~~~ 870 (1195)
T PLN03137 838 VDCRRFLQLVHFGEKFDSTNCKKTCDNCSSSKS 870 (1195)
T ss_pred HhhHHHHHHHHcccccCccCCCCCCCCCCCCCc
Confidence 99999999999999866679988999987653
No 5
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=2.2e-75 Score=603.22 Aligned_cols=412 Identities=40% Similarity=0.753 Sum_probs=384.8
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHH
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~q 93 (724)
.+...+++|..+..+.|++.|..+.|||.|.++|++.+.|.|+++++|||+|||+||++|++...+.+|||+|+++||+|
T Consensus 70 awdkd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~adg~alvi~plislmed 149 (695)
T KOG0353|consen 70 AWDKDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMED 149 (695)
T ss_pred ccccCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccC-hhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 94 qv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T-~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
|.-+|+.+||.+..++...+..+...+...+......++++|+|||.++. ..|++.|.+.+..+.+.+|.|||+||.++
T Consensus 150 qil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsq 229 (695)
T KOG0353|consen 150 QILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQ 229 (695)
T ss_pred HHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhh
Confidence 99999999999999999999999888888888888889999999998875 46899999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccc-hhhHHHHHHH
Q 004900 173 WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLCS 251 (724)
Q Consensus 173 ~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~-~~~k~~~L~~ 251 (724)
|||||||+|..|+-+.+.|++.|+++||||++..+..|....|++.....+..+|+|||++|.|+.++. .++-++++..
T Consensus 230 wghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl~yev~qkp~n~dd~~edi~k 309 (695)
T KOG0353|consen 230 WGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNLKYEVRQKPGNEDDCIEDIAK 309 (695)
T ss_pred hCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCceeEeeeCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999998865 4566778887
Q ss_pred HHHh-cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceE
Q 004900 252 VLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (724)
Q Consensus 252 lLk~-~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~V 330 (724)
+++. +.+..+||||-++++|+.++..|+..|+.+..||+.|.+.+|..+.+.|..|+++|+|||.+||||||+|+||+|
T Consensus 310 ~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfv 389 (695)
T KOG0353|consen 310 LIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFV 389 (695)
T ss_pred HhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEE
Confidence 7764 567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeCCCCCHHHHHH-------------------------------------------HHcccCCCCCCCeEEEEEccccH
Q 004900 331 CHFNIPKSMEAFYQ-------------------------------------------ESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 331 I~~d~P~S~~~yiQ-------------------------------------------r~GRAGRdG~~g~~il~~~~~D~ 367 (724)
||..+|+|++.||| ++||||||++++.||+||...|.
T Consensus 390 ihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~di 469 (695)
T KOG0353|consen 390 IHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADI 469 (695)
T ss_pred EecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHH
Confidence 99999999999999 89999999999999999999998
Q ss_pred HHHHHHHHhccCCCCCcchhhHhhhhhhhhhHHHHHHhhhc-cCcchhcchhhcCCCCCCCCcCCCCCCCCCch
Q 004900 368 RRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEG-SGCRRKKILESFGEQIPVSLCKNSCDACKHPN 440 (724)
Q Consensus 368 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~e~-~~Crr~~ll~~fge~~~~~~c~~~CD~C~~~~ 440 (724)
..+..++... +..+..|..|+.||.. +.|||..+.+||+|.+.+..|+++||+|...+
T Consensus 470 fk~ssmv~~e---------------~~g~q~ly~mv~y~~d~s~crrv~laehfde~w~~~~c~k~cd~c~~~n 528 (695)
T KOG0353|consen 470 FKISSMVQME---------------NTGIQKLYEMVRYAADISKCRRVKLAEHFDEAWEPEACNKMCDNCCKDN 528 (695)
T ss_pred HhHHHHHHHH---------------hhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCHHHHHHHhhhhccCc
Confidence 8776665422 3456789999999987 68999999999999999999999999997643
No 6
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.4e-70 Score=635.28 Aligned_cols=404 Identities=42% Similarity=0.733 Sum_probs=360.6
Q ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHH
Q 004900 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGL 98 (724)
Q Consensus 19 ~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l 98 (724)
.+...+.....|+++|||..|||+|.++|+++++|+|++++||||+|||+||++|++...+.+|||+|+++|+.||++.+
T Consensus 6 ~~~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l 85 (607)
T PRK11057 6 VLNLESLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQL 85 (607)
T ss_pred cCCchhHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHH
Confidence 35566677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCCh
Q 004900 99 KEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (724)
Q Consensus 99 ~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFr 178 (724)
+.+|+.+.++++.........+...+..+ .++++|+|||.+.+..+...+. ...+++||||||||+++||++||
T Consensus 86 ~~~gi~~~~~~s~~~~~~~~~~~~~~~~g--~~~il~~tPe~l~~~~~~~~l~----~~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 86 LANGVAAACLNSTQTREQQLEVMAGCRTG--QIKLLYIAPERLMMDNFLEHLA----HWNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred HHcCCcEEEEcCCCCHHHHHHHHHHHhCC--CCcEEEEChHHhcChHHHHHHh----hCCCCEEEEeCccccccccCccc
Confidence 99999999999888877776666666655 4889999999998877665543 23589999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCC
Q 004900 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (724)
Q Consensus 179 p~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~ 258 (724)
|.|..|..++..+|++|+++||||+++.+..++...+++.+|.++..+++++|+.|.+.... .....+..++....+
T Consensus 160 ~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~ 236 (607)
T PRK11057 160 PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKF---KPLDQLMRYVQEQRG 236 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeecc---chHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999998876543 345667777777777
Q ss_pred ceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCC
Q 004900 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKS 338 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S 338 (724)
.++||||+|+++|+.++..|...|+.+..|||+|++++|..+++.|.+|+++|||||++++||||+|+|++||||++|.|
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s 316 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRN 316 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhccCCCCCcchhhHhhhhhhhhhHHHHHHhhhccCcchhcchh
Q 004900 339 MEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILE 418 (724)
Q Consensus 339 ~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~e~~~Crr~~ll~ 418 (724)
+++|+||+|||||+|.+|.|++||++.|...++.++...... .........+..|..||++..|||+.||+
T Consensus 317 ~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~Crr~~~l~ 387 (607)
T PRK11057 317 IESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPAG---------QQQDIERHKLNAMGAFAEAQTCRRLVLLN 387 (607)
T ss_pred HHHHHHHhhhccCCCCCceEEEEeCHHHHHHHHHHHhcCCcH---------HHHHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence 999999999999999999999999999998888887643211 11123345788999999999999999999
Q ss_pred hcCCCCCCCCcCCCCCCCCCchHH
Q 004900 419 SFGEQIPVSLCKNSCDACKHPNLL 442 (724)
Q Consensus 419 ~fge~~~~~~c~~~CD~C~~~~~~ 442 (724)
||||... ..|+ .||+|..+...
T Consensus 388 yf~e~~~-~~c~-~cd~c~~~~~~ 409 (607)
T PRK11057 388 YFGEGRQ-EPCG-NCDICLDPPKQ 409 (607)
T ss_pred HhCCCCC-CCCC-CCCCCCCcccc
Confidence 9999864 3476 89999987543
No 7
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.8e-70 Score=636.20 Aligned_cols=396 Identities=42% Similarity=0.738 Sum_probs=357.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCcee
Q 004900 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (724)
Q Consensus 27 ~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~ 106 (724)
...|++.|||++|||+|.++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++||.||++.++.+|+++.
T Consensus 2 ~~~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~ 81 (591)
T TIGR01389 2 QQVLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAA 81 (591)
T ss_pred hHHHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEE
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHH
Q 004900 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (724)
Q Consensus 107 ~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~ 186 (724)
.++++........++..+..+. ++++|+|||.+.++.+...+ ....+++||||||||+++||++|||.|..+..
T Consensus 82 ~~~s~~~~~~~~~~~~~l~~~~--~~il~~tpe~l~~~~~~~~l----~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~ 155 (591)
T TIGR01389 82 YLNSTLSAKEQQDIEKALVNGE--LKLLYVAPERLEQDYFLNML----QRIPIALVAVDEAHCVSQWGHDFRPEYQRLGS 155 (591)
T ss_pred EEeCCCCHHHHHHHHHHHhCCC--CCEEEEChhHhcChHHHHHH----hcCCCCEEEEeCCcccccccCccHHHHHHHHH
Confidence 9999988888877777776654 89999999999887765544 34469999999999999999999999999999
Q ss_pred HHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEec
Q 004900 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCL 266 (724)
Q Consensus 187 l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~ 266 (724)
++..+|+.|+++||||+++.+..++...+++.++.++..+++++|+.|.+.... .+...+.+++....+.++||||+
T Consensus 156 l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~---~~~~~l~~~l~~~~~~~~IIf~~ 232 (591)
T TIGR01389 156 LAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKN---NKQKFLLDYLKKHRGQSGIIYAS 232 (591)
T ss_pred HHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCC---CHHHHHHHHHHhcCCCCEEEEEC
Confidence 999999999999999999999999999999999988889999999999887653 45667777887776788999999
Q ss_pred ccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHH
Q 004900 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (724)
Q Consensus 267 sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~ 346 (724)
|++.|+.+++.|...|+.+..|||+|+.++|..+++.|.+|+++|||||++|+||||+|+|++||||++|.|++.|+|++
T Consensus 233 sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~ 312 (591)
T TIGR01389 233 SRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEA 312 (591)
T ss_pred cHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCeEEEEEccccHHHHHHHHHhccCCCCCcchhhHhhhhhhhhhHHHHHHhhhccCcchhcchhhcCCCCCC
Q 004900 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIPV 426 (724)
Q Consensus 347 GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~e~~~Crr~~ll~~fge~~~~ 426 (724)
|||||+|.++.|+++|++.|...+++++...... ..........+..|..||++..|||.++++|||+.. +
T Consensus 313 GRaGR~G~~~~~il~~~~~d~~~~~~~i~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~c~r~~~~~~f~~~~-~ 383 (591)
T TIGR01389 313 GRAGRDGLPAEAILLYSPADIALLKRRIEQSEAD--------DDYKQIEREKLRAMIAYCETQTCRRAYILRYFGENE-V 383 (591)
T ss_pred ccccCCCCCceEEEecCHHHHHHHHHHHhccCCc--------HHHHHHHHHHHHHHHHHHcccccHhHHHHHhcCCCC-C
Confidence 9999999999999999999999988888653221 122233456789999999999999999999999874 3
Q ss_pred CCcCCCCCCCCCchH
Q 004900 427 SLCKNSCDACKHPNL 441 (724)
Q Consensus 427 ~~c~~~CD~C~~~~~ 441 (724)
..|+ .||+|..+..
T Consensus 384 ~~c~-~cd~c~~~~~ 397 (591)
T TIGR01389 384 EPCG-NCDNCLDPPK 397 (591)
T ss_pred CCCC-CCCCCCCCCc
Confidence 4686 7999987653
No 8
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.7e-70 Score=617.11 Aligned_cols=394 Identities=46% Similarity=0.820 Sum_probs=348.6
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeee
Q 004900 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (724)
Q Consensus 29 ~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l 108 (724)
.|+++|||..|||+|.++|+++++|+|++++||||+|||+||++|++...+.+|||+||++|+.||++.+..+|+.+..+
T Consensus 2 ~l~~~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l 81 (470)
T TIGR00614 2 ILKTVFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFL 81 (470)
T ss_pred hhHhhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEE
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHhhhhcCCCCccEEEeCcccccChh-HHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHH
Q 004900 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (724)
Q Consensus 109 ~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~-~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l 187 (724)
++.........++..+..+ .++++|+|||.+.+.. ++..+. ....+++||||||||+++||++||+.|..+..+
T Consensus 82 ~~~~~~~~~~~i~~~~~~~--~~~il~~TPe~l~~~~~~~~~l~---~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l 156 (470)
T TIGR00614 82 NSSQSKEQQKNVLTDLKDG--KIKLLYVTPEKCSASNRLLQTLE---ERKGITLIAVDEAHCISQWGHDFRPDYKALGSL 156 (470)
T ss_pred eCCCCHHHHHHHHHHHhcC--CCCEEEECHHHHcCchhHHHHHH---hcCCcCEEEEeCCcccCccccccHHHHHHHHHH
Confidence 9988887777777776554 4899999999988765 443332 456799999999999999999999999999999
Q ss_pred HhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHH-hcCCceEEEEec
Q 004900 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK-ANGDTCAIVYCL 266 (724)
Q Consensus 188 ~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk-~~~~~~~IIf~~ 266 (724)
+..+|++|+++||||+++.+..++...+++.++.++..+++++|+.|.+..... ..+..+..++. ...+.++||||+
T Consensus 157 ~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~--~~~~~l~~~l~~~~~~~~~IIF~~ 234 (470)
T TIGR00614 157 KQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTP--KILEDLLRFIRKEFKGKSGIIYCP 234 (470)
T ss_pred HHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCc--cHHHHHHHHHHHhcCCCceEEEEC
Confidence 999999999999999999999999999999999999999999999998877642 45666777776 455667899999
Q ss_pred ccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHH
Q 004900 267 ERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQES 346 (724)
Q Consensus 267 sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~ 346 (724)
|++.|+.++..|...|+.+..|||+|++++|..+++.|.+|+++|||||++++||||+|+|++||||++|.|++.|+||+
T Consensus 235 s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~ 314 (470)
T TIGR00614 235 SRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQES 314 (470)
T ss_pred cHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCeEEEEEccccHHHHHHHHHhccCCCCCcchhhHhhhhhhhhhHHHHHHhhhccCcchhcchhhcCCCCC-
Q 004900 347 GRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRKKILESFGEQIP- 425 (724)
Q Consensus 347 GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~e~~~Crr~~ll~~fge~~~- 425 (724)
|||||+|.+|.|++||++.|...++.++....... ........+..|..|++...|||+.|++|||+...
T Consensus 315 GRaGR~G~~~~~~~~~~~~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~crr~~l~~~f~~~~~~ 385 (470)
T TIGR00614 315 GRAGRDGLPSECHLFYAPADINRLRRLLMEEPDGQ---------QRTYKLKLYEMMEYCLNSSTCRRLILLSHFGEKQLN 385 (470)
T ss_pred cCcCCCCCCceEEEEechhHHHHHHHHHhcCCchh---------HHHHHHHHHHHHHHHhccccCHHHHHHHHcCCcccc
Confidence 99999999999999999999999998887543211 11222345677888888899999999999999632
Q ss_pred ----CCCcCCCCCCCCC
Q 004900 426 ----VSLCKNSCDACKH 438 (724)
Q Consensus 426 ----~~~c~~~CD~C~~ 438 (724)
...|..+||+|..
T Consensus 386 ~~~~~~~~~~~C~~C~~ 402 (470)
T TIGR00614 386 KSFGIMGTEKCCDNCCK 402 (470)
T ss_pred cccccccCCCCCCCCCC
Confidence 2346667888865
No 9
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.1e-49 Score=446.21 Aligned_cols=342 Identities=19% Similarity=0.250 Sum_probs=273.3
Q ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc-------------CCCeE
Q 004900 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KPGIV 81 (724)
Q Consensus 15 ~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~-------------~~~~v 81 (724)
..|.++++++.+.+.|.. +||..|+|+|.++|+.++.|+|++++||||+|||++|++|++. .+..+
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 8 QKFSDFALHPQVVEALEK-KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 468889999999999988 7999999999999999999999999999999999999999873 13579
Q ss_pred EEEcCcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcC
Q 004900 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (724)
Q Consensus 82 LVlsPl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~ 157 (724)
|||+||++|+.|+.+.+..+ ++.+..+.++......... +. ...+|+++||+.+.... ........
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---l~---~~~~IlV~TP~~l~~~l----~~~~~~l~ 156 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKV---LE---SGVDILIGTTGRLIDYA----KQNHINLG 156 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hc---CCCCEEEECHHHHHHHH----HcCCcccc
Confidence 99999999999998877653 5677666666544333222 22 23678888887653211 01233456
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCC---CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccC---CCCc
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPN 231 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p---~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~---~r~n 231 (724)
.+.+|||||||++.+|| |..+. ..+....| ..+.+++|||++..+...+...+ .+|..+.... ...+
T Consensus 157 ~v~~lViDEad~l~~~~--f~~~i---~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~--~~p~~i~v~~~~~~~~~ 229 (423)
T PRK04837 157 AIQVVVLDEADRMFDLG--FIKDI---RWLFRRMPPANQRLNMLFSATLSYRVRELAFEHM--NNPEYVEVEPEQKTGHR 229 (423)
T ss_pred cccEEEEecHHHHhhcc--cHHHH---HHHHHhCCCccceeEEEEeccCCHHHHHHHHHHC--CCCEEEEEcCCCcCCCc
Confidence 69999999999999998 55444 34444454 34578999999998877555544 4554433221 1233
Q ss_pred eEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceE
Q 004900 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (724)
Q Consensus 232 i~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~V 311 (724)
+...+... ...++...|..++......++||||+++..|+.++..|...|+.+..+||+|++++|..+++.|++|+++|
T Consensus 230 i~~~~~~~-~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~v 308 (423)
T PRK04837 230 IKEELFYP-SNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDI 308 (423)
T ss_pred eeEEEEeC-CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcE
Confidence 33322222 23567777888888776788999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHH
Q 004900 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 312 LVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~ 375 (724)
||||+++++|||+|+|++|||||+|.+++.|+||+||+||+|+.|.+++|+..+|...+..+.+
T Consensus 309 LVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~ 372 (423)
T PRK04837 309 LVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIET 372 (423)
T ss_pred EEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988877776644
No 10
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.6e-50 Score=442.52 Aligned_cols=342 Identities=25% Similarity=0.373 Sum_probs=278.5
Q ss_pred cCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------------CCeEEE
Q 004900 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (724)
Q Consensus 16 ~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------------~~~vLV 83 (724)
.|..+++++++...|+. -||+.|+|+|.+.|+.++.|+|++.+|.||+||||+|++|++.+ ++++||
T Consensus 92 ~f~~~~ls~~~~~~lk~-~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLV 170 (519)
T KOG0331|consen 92 AFQELGLSEELMKALKE-QGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLV 170 (519)
T ss_pred hhhcccccHHHHHHHHh-cCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEE
Confidence 67788899999999998 59999999999999999999999999999999999999999852 568999
Q ss_pred EcCcHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhh--hhcC
Q 004900 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI--HSRG 157 (724)
Q Consensus 84 lsPl~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~--~~~~ 157 (724)
|+|||+|+.|....+..++ ++..++.++......... +.. .++|+ ++||+++.++.+. .++.
T Consensus 171 L~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~---l~~---gvdiv------iaTPGRl~d~le~g~~~l~ 238 (519)
T KOG0331|consen 171 LAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRD---LER---GVDVV------IATPGRLIDLLEEGSLNLS 238 (519)
T ss_pred EcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHH---Hhc---CCcEE------EeCChHHHHHHHcCCcccc
Confidence 9999999999888888753 456677777666554322 222 25564 4555666666443 3455
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhh-CCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC-----CCc
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-----RPN 231 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~-~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~-----r~n 231 (724)
.+.++|+||||.|+++| |++..+.| +... -+..+++++|||++..+.......++ ++..+..... ..+
T Consensus 239 ~v~ylVLDEADrMldmG--Fe~qI~~I--l~~i~~~~rQtlm~saTwp~~v~~lA~~fl~--~~~~i~ig~~~~~~a~~~ 312 (519)
T KOG0331|consen 239 RVTYLVLDEADRMLDMG--FEPQIRKI--LSQIPRPDRQTLMFSATWPKEVRQLAEDFLN--NPIQINVGNKKELKANHN 312 (519)
T ss_pred ceeEEEeccHHhhhccc--cHHHHHHH--HHhcCCCcccEEEEeeeccHHHHHHHHHHhc--CceEEEecchhhhhhhcc
Confidence 79999999999999998 88877665 3333 23558999999999999887777776 6654443321 334
Q ss_pred eEEEEEeccchhhHHHHHHHHHHhc---CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCC
Q 004900 232 LFYEVRYKDLLDDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (724)
Q Consensus 232 i~~~v~~~~~~~~k~~~L~~lLk~~---~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~ 308 (724)
+...+...+ ...+...|..+|... .++++||||+|++.|++|+..|+..++++..+||+.++.+|..+++.|++|+
T Consensus 313 i~qive~~~-~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~ 391 (519)
T KOG0331|consen 313 IRQIVEVCD-ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGK 391 (519)
T ss_pred hhhhhhhcC-HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCC
Confidence 444444333 345566666666543 4678999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 309 ~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
..|||||+++++|+|+|+|++|||||+|.++++|+||+||+||+|+.|.+++||...+......+.+-.
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l 460 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVL 460 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988777665543
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1e-48 Score=449.90 Aligned_cols=345 Identities=22% Similarity=0.318 Sum_probs=271.1
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC-----------CCeEE
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVL 82 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~-----------~~~vL 82 (724)
...|.++.+++.+.+.|++ +||..|+|+|.++|+.++.|+|+|+++|||+|||++|++|++.+ ++.+|
T Consensus 129 ~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~L 207 (545)
T PTZ00110 129 VVSFEYTSFPDYILKSLKN-AGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVL 207 (545)
T ss_pred cCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEE
Confidence 4567778889999999998 79999999999999999999999999999999999999998742 45799
Q ss_pred EEcCcHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH-HhhhhcC
Q 004900 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIHSRG 157 (724)
Q Consensus 83 VlsPl~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L-~~~~~~~ 157 (724)
||+||++|+.|+.+.+..++ +....+.++....... ..+.. ..+|+++||+.+.. .+ .......
T Consensus 208 IL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~---~~l~~---~~~IlVaTPgrL~d-----~l~~~~~~l~ 276 (545)
T PTZ00110 208 VLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQI---YALRR---GVEILIACPGRLID-----FLESNVTNLR 276 (545)
T ss_pred EECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHH---HHHHc---CCCEEEECHHHHHH-----HHHcCCCChh
Confidence 99999999999999988864 4455555554433322 12222 36788888876531 11 1223345
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc-C---CCCceE
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-F---NRPNLF 233 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s-~---~r~ni~ 233 (724)
.+++|||||||++.+|| |++.+..+. ....++.+++++|||++..+...... +....+..+... . ...++.
T Consensus 277 ~v~~lViDEAd~mld~g--f~~~i~~il--~~~~~~~q~l~~SAT~p~~v~~l~~~-l~~~~~v~i~vg~~~l~~~~~i~ 351 (545)
T PTZ00110 277 RVTYLVLDEADRMLDMG--FEPQIRKIV--SQIRPDRQTLMWSATWPKEVQSLARD-LCKEEPVHVNVGSLDLTACHNIK 351 (545)
T ss_pred hCcEEEeehHHhhhhcc--hHHHHHHHH--HhCCCCCeEEEEEeCCCHHHHHHHHH-HhccCCEEEEECCCccccCCCee
Confidence 68999999999999998 777666553 22346889999999998877653333 322344433322 1 123443
Q ss_pred EEEEeccchhhHHHHHHHHHHhc--CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceE
Q 004900 234 YEVRYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (724)
Q Consensus 234 ~~v~~~~~~~~k~~~L~~lLk~~--~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~V 311 (724)
..+.... ...+...|..++... .+.++||||++++.|+.|+..|...|+.+..+||++++++|..+++.|++|+++|
T Consensus 352 q~~~~~~-~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~I 430 (545)
T PTZ00110 352 QEVFVVE-EHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPI 430 (545)
T ss_pred EEEEEEe-chhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcE
Confidence 3333222 234566666666553 4678999999999999999999999999999999999999999999999999999
Q ss_pred EEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHh
Q 004900 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 312 LVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
||||+++++|||+|+|++|||||+|.+++.|+||+||+||+|..|.|++|++++|...++.+++.
T Consensus 431 LVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~ 495 (545)
T PTZ00110 431 MIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKV 495 (545)
T ss_pred EEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998877666543
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.8e-48 Score=438.58 Aligned_cols=342 Identities=21% Similarity=0.285 Sum_probs=270.0
Q ss_pred cCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------------CCeEEE
Q 004900 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLV 83 (724)
Q Consensus 16 ~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------------~~~vLV 83 (724)
.|+.+.+++.+.+.|.+ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.. ...+||
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLi 80 (456)
T PRK10590 2 SFDSLGLSPDILRAVAE-QGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALI 80 (456)
T ss_pred CHHHcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEE
Confidence 36778899999999998 79999999999999999999999999999999999999998742 136999
Q ss_pred EcCcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCc
Q 004900 84 VSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLL 159 (724)
Q Consensus 84 lsPl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l 159 (724)
|+||++|+.|+.+.++.+ ++....+.++......... +. ...+|+++||+.+..... ........+
T Consensus 81 l~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---l~---~~~~IiV~TP~rL~~~~~----~~~~~l~~v 150 (456)
T PRK10590 81 LTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---LR---GGVDVLVATPGRLLDLEH----QNAVKLDQV 150 (456)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---Hc---CCCcEEEEChHHHHHHHH----cCCcccccc
Confidence 999999999999988874 4555555555544332211 11 247899999987643211 122345568
Q ss_pred cEEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeec---cCCCCceEEE
Q 004900 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYE 235 (724)
Q Consensus 160 ~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~---s~~r~ni~~~ 235 (724)
++|||||||++++|+ |... +..+...++ ..+++++|||+++.+.......+ .++..+.. ....+++...
T Consensus 151 ~~lViDEah~ll~~~--~~~~---i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~--~~~~~i~~~~~~~~~~~i~~~ 223 (456)
T PRK10590 151 EILVLDEADRMLDMG--FIHD---IRRVLAKLPAKRQNLLFSATFSDDIKALAEKLL--HNPLEIEVARRNTASEQVTQH 223 (456)
T ss_pred eEEEeecHHHHhccc--cHHH---HHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHc--CCCeEEEEecccccccceeEE
Confidence 999999999999998 4433 334444454 57899999999988765444433 34443322 2223344433
Q ss_pred EEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEc
Q 004900 236 VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (724)
Q Consensus 236 v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT 315 (724)
+...+ ...+...+..++......++||||+++..++.+++.|...|+.+..|||+|++++|..+++.|++|+++|||||
T Consensus 224 ~~~~~-~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaT 302 (456)
T PRK10590 224 VHFVD-KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT 302 (456)
T ss_pred EEEcC-HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 33332 23445566666766666789999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHh
Q 004900 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 316 ~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
+++++|||+|+|++||||++|.++++|+||+||+||+|..|.+++|+..+|...++.+.+.
T Consensus 303 dv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~~ie~~ 363 (456)
T PRK10590 303 DIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIEKL 363 (456)
T ss_pred cHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988877766553
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2.4e-48 Score=439.75 Aligned_cols=343 Identities=21% Similarity=0.278 Sum_probs=274.7
Q ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCcH
Q 004900 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (724)
Q Consensus 15 ~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl~ 88 (724)
..|..+++.+.+.+.|.. +||..|+|+|.++|+.++.|+|++++||||+|||++|++|++.+ ...+|||+||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~-~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptr 82 (460)
T PRK11776 4 TAFSTLPLPPALLANLNE-LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTR 82 (460)
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCH
Confidence 458889999999999988 79999999999999999999999999999999999999999863 34799999999
Q ss_pred HHHHHHHHHHHHc-----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEE
Q 004900 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (724)
Q Consensus 89 aL~~qqv~~l~~~-----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIV 163 (724)
+|+.|+.+.++.+ ++.+..+.++.......... . ...+|+++||+.+...-. ........+++||
T Consensus 83 eLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l---~---~~~~IvV~Tp~rl~~~l~----~~~~~l~~l~~lV 152 (460)
T PRK11776 83 ELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSL---E---HGAHIIVGTPGRILDHLR----KGTLDLDALNTLV 152 (460)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHh---c---CCCCEEEEChHHHHHHHH----cCCccHHHCCEEE
Confidence 9999999888874 45566666666554433222 1 246788888876532110 1122344589999
Q ss_pred EccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeecc--CCCCceEEEEEecc
Q 004900 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--FNRPNLFYEVRYKD 240 (724)
Q Consensus 164 IDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s--~~r~ni~~~v~~~~ 240 (724)
|||||++.++| |...+. .+...+| ..+++++|||+++.+....... +.++..+... ...+++...+....
T Consensus 153 iDEad~~l~~g--~~~~l~---~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~--~~~~~~i~~~~~~~~~~i~~~~~~~~ 225 (460)
T PRK11776 153 LDEADRMLDMG--FQDAID---AIIRQAPARRQTLLFSATYPEGIAAISQRF--QRDPVEVKVESTHDLPAIEQRFYEVS 225 (460)
T ss_pred EECHHHHhCcC--cHHHHH---HHHHhCCcccEEEEEEecCcHHHHHHHHHh--cCCCEEEEECcCCCCCCeeEEEEEeC
Confidence 99999999988 655544 4444444 6789999999998876644433 3455543322 22333433333332
Q ss_pred chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc
Q 004900 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (724)
Q Consensus 241 ~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~ 320 (724)
...+...+..++......++||||+|++.++.++..|...|+.+..|||+|++.+|..+++.|++|+++|||||+++++
T Consensus 226 -~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~r 304 (460)
T PRK11776 226 -PDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAAR 304 (460)
T ss_pred -cHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEeccccc
Confidence 2457788888888777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHh
Q 004900 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 321 GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
|||+|+|++|||||+|.+++.|+||+||+||.|..|.|++|+.+.|...+..+.+.
T Consensus 305 GiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~~~~~~i~~~ 360 (460)
T PRK11776 305 GLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQRANAIEDY 360 (460)
T ss_pred ccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988777666543
No 14
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.5e-48 Score=433.19 Aligned_cols=342 Identities=23% Similarity=0.318 Sum_probs=277.3
Q ss_pred cCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC----------CCeEEEEc
Q 004900 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVS 85 (724)
Q Consensus 16 ~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~----------~~~vLVls 85 (724)
.|+++.+.+.+.+.|++ +||..|+++|.++|++++.|+|++++||||+|||++|++|++.. ...+|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~-~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQD-KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEEC
Confidence 47889999999999999 79999999999999999999999999999999999999999842 35899999
Q ss_pred CcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccE
Q 004900 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (724)
Q Consensus 86 Pl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~l 161 (724)
||++|+.|+.+.+..+ ++.+..+.++.........+. ...+|+++||+.+.... .........+++
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~------~~~~IlV~Tp~rl~~~~----~~~~~~~~~v~~ 150 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS------ENQDIVVATPGRLLQYI----KEENFDCRAVET 150 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHHHHH----HcCCcCcccCCE
Confidence 9999999988877664 567777777666554433322 13678888887654211 012223456899
Q ss_pred EEEccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc---CCCCceEEEEE
Q 004900 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVR 237 (724)
Q Consensus 162 IVIDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s---~~r~ni~~~v~ 237 (724)
|||||||++++|| |...+..+. ... ...++++||||++.....++...+ +.++..+... ..+.++...+.
T Consensus 151 lViDEah~~l~~~--~~~~~~~i~---~~~~~~~q~~~~SAT~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~i~~~~~ 224 (434)
T PRK11192 151 LILDEADRMLDMG--FAQDIETIA---AETRWRKQTLLFSATLEGDAVQDFAERL-LNDPVEVEAEPSRRERKKIHQWYY 224 (434)
T ss_pred EEEECHHHHhCCC--cHHHHHHHH---HhCccccEEEEEEeecCHHHHHHHHHHH-ccCCEEEEecCCcccccCceEEEE
Confidence 9999999999998 666665543 333 357899999999877666666655 3455544332 22344544444
Q ss_pred eccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q 004900 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (724)
Q Consensus 238 ~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a 317 (724)
..+....+...|..+++.....++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||++
T Consensus 225 ~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~ 304 (434)
T PRK11192 225 RADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDV 304 (434)
T ss_pred EeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccc
Confidence 44444567788888887766788999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHH
Q 004900 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (724)
Q Consensus 318 ~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~ 374 (724)
+++|||+|+|++|||||+|.+.+.|+||+||+||+|..|.+++|+...|...+..+.
T Consensus 305 ~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 305 AARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred cccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988877666554
No 15
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.1e-48 Score=446.63 Aligned_cols=343 Identities=16% Similarity=0.209 Sum_probs=274.6
Q ss_pred cCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC-------------CCeEE
Q 004900 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PGIVL 82 (724)
Q Consensus 16 ~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~-------------~~~vL 82 (724)
.|.++.+.+.+.+.|.. +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++.+ ...+|
T Consensus 10 ~f~~l~l~~~l~~~L~~-~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 10 TFSSFDLHPALLAGLES-AGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred ChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 58889999999999988 79999999999999999999999999999999999999998752 35899
Q ss_pred EEcCcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCC
Q 004900 83 VVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL 158 (724)
Q Consensus 83 VlsPl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~ 158 (724)
||+||++|+.|+++.+..+ ++.+..++++.........+. ...+|+++||+.+...... ........
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~------~~~dIiV~TP~rL~~~l~~---~~~~~l~~ 159 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ------QGVDVIIATPGRLIDYVKQ---HKVVSLHA 159 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh------CCCCEEEECHHHHHHHHHh---ccccchhh
Confidence 9999999999999988875 455666666665544333322 1367888888865431110 01223455
Q ss_pred ccEEEEccccccccCCCCChHHHHHHHHHHhhCC---CCCEEEEeecCChhhHHHHHHhhccCCCeEeec---cCCCCce
Q 004900 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNL 232 (724)
Q Consensus 159 l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p---~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~---s~~r~ni 232 (724)
+++|||||||++.+|| |.... ..+...+| +.++++||||++..+...+...+ .++..+.. .....++
T Consensus 160 v~~lViDEAh~lld~g--f~~~i---~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l--~~p~~i~v~~~~~~~~~i 232 (572)
T PRK04537 160 CEICVLDEADRMFDLG--FIKDI---RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHM--NEPEKLVVETETITAARV 232 (572)
T ss_pred eeeeEecCHHHHhhcc--hHHHH---HHHHHhcccccCceEEEEeCCccHHHHHHHHHHh--cCCcEEEeccccccccce
Confidence 8899999999999988 54444 44445455 57899999999998877665544 34432221 1222333
Q ss_pred EEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEE
Q 004900 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (724)
Q Consensus 233 ~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VL 312 (724)
...+... ....++..|..++....+.++||||+|+..|+.|++.|...|+.+..|||+|++.+|..+++.|++|+++||
T Consensus 233 ~q~~~~~-~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VL 311 (572)
T PRK04537 233 RQRIYFP-ADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEIL 311 (572)
T ss_pred eEEEEec-CHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEE
Confidence 3333322 235667778888887777889999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHh
Q 004900 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 313 VAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
|||+++++|||+|+|++|||||+|.+++.|+||+||+||.|..|.|++|+...+...+..+.+.
T Consensus 312 VaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~~~~~l~~i~~~ 375 (572)
T PRK04537 312 VATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMSLPDIEAY 375 (572)
T ss_pred EEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887766666543
No 16
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-47 Score=435.76 Aligned_cols=348 Identities=18% Similarity=0.245 Sum_probs=273.4
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC-------------CC
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------------PG 79 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~-------------~~ 79 (724)
....|.++.+++.+.++|.+ +||..++++|.++|+.++.|+|+++.+|||+|||++|++|++.. ..
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~ 163 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHD-LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEP 163 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCc
Confidence 34567889999999999998 89999999999999999999999999999999999999998752 35
Q ss_pred eEEEEcCcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhh
Q 004900 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (724)
Q Consensus 80 ~vLVlsPl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~ 155 (724)
.+|||+||++|+.|+.+.++.+ ++.+..+.++........ .+.. ...+|+++||+++... .. .....
T Consensus 164 ~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---~~~~--~~~~Iiv~TP~~Ll~~--~~--~~~~~ 234 (475)
T PRK01297 164 RALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLK---QLEA--RFCDILVATPGRLLDF--NQ--RGEVH 234 (475)
T ss_pred eEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHH---HHhC--CCCCEEEECHHHHHHH--HH--cCCcc
Confidence 8999999999999999988875 566666666544332221 1222 2368999999877321 10 11223
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc---CCCCce
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNL 232 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s---~~r~ni 232 (724)
...+++|||||||++.+++ |.+.+..+........+.+++++|||.+..+......++ .++..+... ...+++
T Consensus 235 l~~l~~lViDEah~l~~~~--~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~ 310 (475)
T PRK01297 235 LDMVEVMVLDEADRMLDMG--FIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWT--TDPAIVEIEPENVASDTV 310 (475)
T ss_pred cccCceEEechHHHHHhcc--cHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhc--cCCEEEEeccCcCCCCcc
Confidence 4568999999999999987 666555543322222356899999999988766444433 344443221 112333
Q ss_pred EEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEE
Q 004900 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (724)
Q Consensus 233 ~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VL 312 (724)
...+.... ..++...|..++......++||||++++.++.++..|...|+.+..+||++++++|..+++.|++|+++||
T Consensus 311 ~~~~~~~~-~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vL 389 (475)
T PRK01297 311 EQHVYAVA-GSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVL 389 (475)
T ss_pred cEEEEEec-chhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEE
Confidence 33333222 24567777888877777789999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHH
Q 004900 313 VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 313 VAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~ 375 (724)
|||+++++|||+|+|++||+|++|.|+.+|+||+|||||.|..|.+++|+..+|...+..+.+
T Consensus 390 vaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~d~~~~~~~~~ 452 (475)
T PRK01297 390 VATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLPEIEE 452 (475)
T ss_pred EEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888776666544
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.1e-47 Score=439.62 Aligned_cols=344 Identities=22% Similarity=0.330 Sum_probs=266.3
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc-------------CCC
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------------KPG 79 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~-------------~~~ 79 (724)
+...|..+.+++.+.+.|+. .||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++. .++
T Consensus 119 pi~~f~~~~l~~~l~~~L~~-~g~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~ 197 (518)
T PLN00206 119 PILSFSSCGLPPKLLLNLET-AGYEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNP 197 (518)
T ss_pred hhcCHHhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCc
Confidence 45567778899999999987 7999999999999999999999999999999999999999874 246
Q ss_pred eEEEEcCcHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhh
Q 004900 80 IVLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (724)
Q Consensus 80 ~vLVlsPl~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~ 155 (724)
.+|||+||++|+.|+.+.++.++ +....+.++....... ..+.. ..+|+++||+.+..- +. .....
T Consensus 198 ~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~---~~l~~---~~~IiV~TPgrL~~~--l~--~~~~~ 267 (518)
T PLN00206 198 LAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQL---YRIQQ---GVELIVGTPGRLIDL--LS--KHDIE 267 (518)
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHH---HHhcC---CCCEEEECHHHHHHH--HH--cCCcc
Confidence 89999999999998887777653 3444444443332221 12222 367888888765321 10 11234
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc-CCCCc--e
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPN--L 232 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s-~~r~n--i 232 (724)
...+.+|||||||++.+|| |++.+.. +...+++.+++++|||+++.+.... ..+ +.++..+... ..+++ +
T Consensus 268 l~~v~~lViDEad~ml~~g--f~~~i~~---i~~~l~~~q~l~~SATl~~~v~~l~-~~~-~~~~~~i~~~~~~~~~~~v 340 (518)
T PLN00206 268 LDNVSVLVLDEVDCMLERG--FRDQVMQ---IFQALSQPQVLLFSATVSPEVEKFA-SSL-AKDIILISIGNPNRPNKAV 340 (518)
T ss_pred chheeEEEeecHHHHhhcc--hHHHHHH---HHHhCCCCcEEEEEeeCCHHHHHHH-HHh-CCCCEEEEeCCCCCCCcce
Confidence 5568999999999999998 7766544 4555678999999999999876533 322 3455544332 23332 2
Q ss_pred EEEEEeccchhhHHHHHHHHHHhcC--CceEEEEecccccHHHHHHHHHh-CCCceeeecCCCCHHHHHHHHHHhhcCCc
Q 004900 233 FYEVRYKDLLDDAYADLCSVLKANG--DTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLNDKARSSVLDDWISSRK 309 (724)
Q Consensus 233 ~~~v~~~~~~~~k~~~L~~lLk~~~--~~~~IIf~~sr~~~e~La~~L~~-~gi~v~~~H~~l~~~eR~~vl~~F~~g~~ 309 (724)
...+.... ...+...|.+++.... ..++||||+++..++.++..|.. .|+.+..|||+|++++|..+++.|++|++
T Consensus 341 ~q~~~~~~-~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~ 419 (518)
T PLN00206 341 KQLAIWVE-TKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEV 419 (518)
T ss_pred eEEEEecc-chhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCC
Confidence 22222222 2345556666665432 35799999999999999999975 59999999999999999999999999999
Q ss_pred eEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHH
Q 004900 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 310 ~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~ 375 (724)
+|||||+++++|||+|+|++|||||+|.++++|+||+|||||.|..|.+++|++.+|...+..+++
T Consensus 420 ~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~ 485 (518)
T PLN00206 420 PVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVA 485 (518)
T ss_pred CEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988776665554
No 18
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-48 Score=405.66 Aligned_cols=346 Identities=23% Similarity=0.289 Sum_probs=283.1
Q ss_pred cccccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEE
Q 004900 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLV 83 (724)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLV 83 (724)
.......|.++.+.+++.+++++ .||..|+++|.++|+.++.|+|+|+.|.||+|||.+|.||++. +...++|
T Consensus 56 ~~e~~~sf~dLgv~~~L~~ac~~-l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lV 134 (476)
T KOG0330|consen 56 TDESFKSFADLGVHPELLEACQE-LGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALV 134 (476)
T ss_pred hhhhhcchhhcCcCHHHHHHHHH-hCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEE
Confidence 35567789999999999999999 6999999999999999999999999999999999999999985 3578999
Q ss_pred EcCcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH---hhhhc
Q 004900 84 VSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSR 156 (724)
Q Consensus 84 lsPl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~---~~~~~ 156 (724)
++|||+|+.|..+.+..+ |+.+..+.++.........+ ... ..|++ +|||++.+.. +..+.
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L----~kk--PhilV------aTPGrL~dhl~~Tkgf~l 202 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQL----SKK--PHILV------ATPGRLWDHLENTKGFSL 202 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHh----hcC--CCEEE------eCcHHHHHHHHhccCccH
Confidence 999999999999998886 56777777777665433222 122 44544 5566554442 23445
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCC---Cce
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR---PNL 232 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r---~ni 232 (724)
..+.++|+||||++++.. |.+....+ +..+| ..+.+++|||++.++.+.. ...+.+|..+..+... +.+
T Consensus 203 e~lk~LVlDEADrlLd~d--F~~~ld~I---Lk~ip~erqt~LfsATMt~kv~kL~--rasl~~p~~v~~s~ky~tv~~l 275 (476)
T KOG0330|consen 203 EQLKFLVLDEADRLLDMD--FEEELDYI---LKVIPRERQTFLFSATMTKKVRKLQ--RASLDNPVKVAVSSKYQTVDHL 275 (476)
T ss_pred HHhHHHhhchHHhhhhhh--hHHHHHHH---HHhcCccceEEEEEeecchhhHHHH--hhccCCCeEEeccchhcchHHh
Confidence 558899999999999854 76665554 44444 7899999999999998733 5567788766554321 222
Q ss_pred --EEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCce
Q 004900 233 --FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (724)
Q Consensus 233 --~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~ 310 (724)
+|..... .++-..|..+|+...+.++||||+|...++.++-.|+..|+.+..+||.|++..|...++.|++|...
T Consensus 276 kQ~ylfv~~---k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~ 352 (476)
T KOG0330|consen 276 KQTYLFVPG---KDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARS 352 (476)
T ss_pred hhheEeccc---cccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCc
Confidence 2222222 34556788888888889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhcc
Q 004900 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (724)
Q Consensus 311 VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~ 378 (724)
||||||++++|+|+|.|++|||||+|.+..+|+||+||+||.|.+|.+|.+++.-|...+.+|....+
T Consensus 353 iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqyDve~~qrIE~~~g 420 (476)
T KOG0330|consen 353 ILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQYDVELVQRIEHALG 420 (476)
T ss_pred EEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehhhhHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999988888777765544
No 19
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-47 Score=434.59 Aligned_cols=343 Identities=22% Similarity=0.318 Sum_probs=282.8
Q ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC-----C--Ce-EEEEcC
Q 004900 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P--GI-VLVVSP 86 (724)
Q Consensus 15 ~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~-----~--~~-vLVlsP 86 (724)
..|.++.+.+++.+.|.+ .||..|+|+|..+|+.++.|+|+++.|+||+|||++|.+|++.+ . .. +||++|
T Consensus 29 ~~F~~l~l~~~ll~~l~~-~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~P 107 (513)
T COG0513 29 PEFASLGLSPELLQALKD-LGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAP 107 (513)
T ss_pred CCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECC
Confidence 568899999999999999 79999999999999999999999999999999999999999863 1 12 899999
Q ss_pred cHHHHHHHHHHHHHc-----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh--hhhcCCc
Q 004900 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLL 159 (724)
Q Consensus 87 l~aL~~qqv~~l~~~-----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~--~~~~~~l 159 (724)
||+|+.|..+.+..+ ++.+..+.++.+........ ..+ .+|+|+||- ++.++.. ......+
T Consensus 108 TRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l---~~~---~~ivVaTPG------RllD~i~~~~l~l~~v 175 (513)
T COG0513 108 TRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEAL---KRG---VDIVVATPG------RLLDLIKRGKLDLSGV 175 (513)
T ss_pred CHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHH---hcC---CCEEEECcc------HHHHHHHcCCcchhhc
Confidence 999999999988874 35566777776665544332 222 566666554 4444422 3456668
Q ss_pred cEEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccC-----CCCceE
Q 004900 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-----NRPNLF 233 (724)
Q Consensus 160 ~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~-----~r~ni~ 233 (724)
.++|+||||.|++.| |.++...+ ...+| +.++++||||.+..+.......+ .+|..+.... ..+++.
T Consensus 176 ~~lVlDEADrmLd~G--f~~~i~~I---~~~~p~~~qtllfSAT~~~~i~~l~~~~l--~~p~~i~v~~~~~~~~~~~i~ 248 (513)
T COG0513 176 ETLVLDEADRMLDMG--FIDDIEKI---LKALPPDRQTLLFSATMPDDIRELARRYL--NDPVEIEVSVEKLERTLKKIK 248 (513)
T ss_pred CEEEeccHhhhhcCC--CHHHHHHH---HHhCCcccEEEEEecCCCHHHHHHHHHHc--cCCcEEEEccccccccccCce
Confidence 999999999999997 77666555 44444 79999999999997666444444 3776544431 345565
Q ss_pred EEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEE
Q 004900 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (724)
Q Consensus 234 ~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLV 313 (724)
..+......+.++..|..+++.....++||||+|+..|+.|+..|...|+.+..+||+|++++|..+++.|++|+.+|||
T Consensus 249 q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLV 328 (513)
T COG0513 249 QFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLV 328 (513)
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 55555554346899999999987777899999999999999999999999999999999999999999999999999999
Q ss_pred EccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccc-cHHHHHHHHHhc
Q 004900 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSKN 377 (724)
Q Consensus 314 AT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~-D~~~~~~i~~~~ 377 (724)
|||++++|||+|+|++|||||+|.+.+.|+||+||+||.|..|.+++|+.+. |...+..+.+..
T Consensus 329 aTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~~~~e~~~l~~ie~~~ 393 (513)
T COG0513 329 ATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVTEEEEVKKLKRIEKRL 393 (513)
T ss_pred EechhhccCCccccceeEEccCCCCHHHheeccCccccCCCCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999976 787777776654
No 20
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=5.9e-47 Score=439.84 Aligned_cols=344 Identities=21% Similarity=0.291 Sum_probs=276.5
Q ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEcCcH
Q 004900 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLI 88 (724)
Q Consensus 15 ~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLVlsPl~ 88 (724)
..|.++.++++++++|.+ +||.+|+|+|.++|+.++.|+|+|++||||+|||++|++|++. ..+.+|||+||+
T Consensus 6 ~~f~~l~L~~~ll~al~~-~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 6 TTFADLGLKAPILEALND-LGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 358889999999999988 7999999999999999999999999999999999999999874 345899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEE
Q 004900 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (724)
Q Consensus 89 aL~~qqv~~l~~~-----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIV 163 (724)
+|+.|+.+.+..+ ++.+..++++......... +. ...+|+++||+.+.... .........+.+||
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~---l~---~~~~IVVgTPgrl~d~l----~r~~l~l~~l~~lV 154 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRA---LR---QGPQIVVGTPGRLLDHL----KRGTLDLSKLSGLV 154 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHH---hc---CCCCEEEECHHHHHHHH----HcCCcchhhceEEE
Confidence 9999998887764 5666666666544332221 22 23678888887654211 11223355689999
Q ss_pred EccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeec---cCCCCceEEEEEec
Q 004900 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYK 239 (724)
Q Consensus 164 IDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~---s~~r~ni~~~v~~~ 239 (724)
|||||+++.|| |..+ +..+...+| ..++++||||+++.+....... +.++..+.. ....+++.......
T Consensus 155 lDEAd~ml~~g--f~~d---i~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~--l~~~~~i~i~~~~~~~~~i~q~~~~v 227 (629)
T PRK11634 155 LDEADEMLRMG--FIED---VETIMAQIPEGHQTALFSATMPEAIRRITRRF--MKEPQEVRIQSSVTTRPDISQSYWTV 227 (629)
T ss_pred eccHHHHhhcc--cHHH---HHHHHHhCCCCCeEEEEEccCChhHHHHHHHH--cCCCeEEEccCccccCCceEEEEEEe
Confidence 99999999998 4443 444555555 6789999999998876544333 345543322 22344554433322
Q ss_pred cchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc
Q 004900 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (724)
Q Consensus 240 ~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g 319 (724)
. ...+...|..++......++||||+|+..++.|+..|...|+.+..+||+|++.+|..++++|++|+++|||||++++
T Consensus 228 ~-~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~a 306 (629)
T PRK11634 228 W-GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAA 306 (629)
T ss_pred c-hhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHh
Confidence 2 245677788888877667899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 320 ~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
+|||+|+|++|||||+|.+++.|+||+|||||.|+.|.+++|+...|...++.+.+..
T Consensus 307 rGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ie~~~ 364 (629)
T PRK11634 307 RGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTM 364 (629)
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988888887653
No 21
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5.1e-46 Score=413.12 Aligned_cols=346 Identities=20% Similarity=0.284 Sum_probs=267.8
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEcCc
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLVlsPl 87 (724)
...|.++++++.+.+.|.. +||..|+|+|.++|+.+++|+|+++.+|||+|||++|++|++. ....+|||+|+
T Consensus 27 ~~~~~~l~l~~~~~~~l~~-~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt 105 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYS-YGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPT 105 (401)
T ss_pred cCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCC
Confidence 4667888999999999988 7999999999999999999999999999999999999999875 25689999999
Q ss_pred HHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEE
Q 004900 88 IALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (724)
Q Consensus 88 ~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIV 163 (724)
++|+.|+.+.+..++ +.+....++..... ....+.. ..+|+++||+.+..... ........+++||
T Consensus 106 ~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~---~~~Ivv~Tp~~l~~~l~----~~~~~l~~i~lvV 175 (401)
T PTZ00424 106 RELAQQIQKVVLALGDYLKVRCHACVGGTVVRD---DINKLKA---GVHMVVGTPGRVYDMID----KRHLRVDDLKLFI 175 (401)
T ss_pred HHHHHHHHHHHHHHhhhcCceEEEEECCcCHHH---HHHHHcC---CCCEEEECcHHHHHHHH----hCCcccccccEEE
Confidence 999999888887754 33333333332221 1222222 36788888886542111 1122355689999
Q ss_pred EccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeec---cCCCCceEEEEEecc
Q 004900 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKD 240 (724)
Q Consensus 164 IDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~---s~~r~ni~~~v~~~~ 240 (724)
|||||++.+++ |+.....+ +....++.+++++|||+++.+.......+ .++..+.. .....++...+....
T Consensus 176 iDEah~~~~~~--~~~~~~~i--~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (401)
T PTZ00424 176 LDEADEMLSRG--FKGQIYDV--FKKLPPDVQVALFSATMPNEILELTTKFM--RDPKRILVKKDELTLEGIRQFYVAVE 249 (401)
T ss_pred EecHHHHHhcc--hHHHHHHH--HhhCCCCcEEEEEEecCCHHHHHHHHHHc--CCCEEEEeCCCCcccCCceEEEEecC
Confidence 99999999987 44433332 33344578999999999987765444433 33433221 112233333233233
Q ss_pred chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc
Q 004900 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (724)
Q Consensus 241 ~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~ 320 (724)
....+...+..++......++||||+|++.++.++..|...++.+..+||+|++.+|..+++.|++|+++|||||+++++
T Consensus 250 ~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~ 329 (401)
T PTZ00424 250 KEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLAR 329 (401)
T ss_pred hHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccC
Confidence 33445666777777666678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHh
Q 004900 321 GIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 321 GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
|||+|++++||+|++|.+...|+||+|||||.|..|.|++|+..+|...+..+.+.
T Consensus 330 GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~ 385 (401)
T PTZ00424 330 GIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERH 385 (401)
T ss_pred CcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988877766543
No 22
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=9.8e-46 Score=397.40 Aligned_cols=343 Identities=22% Similarity=0.300 Sum_probs=275.8
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---------------C
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------------K 77 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---------------~ 77 (724)
+...|+..+++.+++++++. .||..++|+|..+|+..+..+|+|.+|.||+|||++|++|.+. .
T Consensus 243 plrnwEE~~~P~e~l~~I~~-~~y~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~ 321 (673)
T KOG0333|consen 243 PLRNWEESGFPLELLSVIKK-PGYKEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIE 321 (673)
T ss_pred cccChhhcCCCHHHHHHHHh-cCCCCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhccc
Confidence 34557778888999998888 6999999999999999999999999999999999999998863 2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH--H
Q 004900 78 PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--K 151 (724)
Q Consensus 78 ~~~vLVlsPl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L--~ 151 (724)
++.++|+.||++|++|..++-.++ |++++.+.++.+..+.. +++-.++-..|+||+++... .
T Consensus 322 gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~------------fqls~gceiviatPgrLid~Len 389 (673)
T KOG0333|consen 322 GPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQG------------FQLSMGCEIVIATPGRLIDSLEN 389 (673)
T ss_pred CceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhh------------hhhhccceeeecCchHHHHHHHH
Confidence 678999999999999888776664 66777666666655432 22222233355555554433 2
Q ss_pred hhhhcCCccEEEEccccccccCCCCChHHHHHHHHHH-------------------hhCC--C--CCEEEEeecCChhhH
Q 004900 152 KIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR-------------------NYLP--D--VPILALTATAAPKVQ 208 (724)
Q Consensus 152 ~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~-------------------~~~p--~--~pil~LSAT~~~~v~ 208 (724)
....+....+||+|||+.|.++| |.|+|..+..-. ..+. . .+.+.||||++|.+.
T Consensus 390 r~lvl~qctyvvldeadrmiDmg--fE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~ve 467 (673)
T KOG0333|consen 390 RYLVLNQCTYVVLDEADRMIDMG--FEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVE 467 (673)
T ss_pred HHHHhccCceEeccchhhhhccc--ccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHH
Confidence 33345557899999999999999 888887652211 1111 1 568999999999987
Q ss_pred HHHHHhhccCCCeEeeccC-C--CCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCce
Q 004900 209 KDVMESLCLQNPLVLKSSF-N--RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (724)
Q Consensus 209 ~di~~~l~l~~~~vi~~s~-~--r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v 285 (724)
..... .+.+|+++..++ . .|-+...|.... .+.+...|.++|.+....++|||+|+++.|+.||+.|.+.|+.|
T Consensus 468 rlar~--ylr~pv~vtig~~gk~~~rveQ~v~m~~-ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~ 544 (673)
T KOG0333|consen 468 RLARS--YLRRPVVVTIGSAGKPTPRVEQKVEMVS-EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKV 544 (673)
T ss_pred HHHHH--HhhCCeEEEeccCCCCccchheEEEEec-chHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccceE
Confidence 74444 356777665433 2 334444554443 35679999999999888899999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccc
Q 004900 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (724)
Q Consensus 286 ~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~ 365 (724)
..|||+-++++|..+++.|++|..+|||||+++|+|||+|||.+||+||+++++++|.||+||+||+|+.|.++.|+++.
T Consensus 545 ~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtHRIGRTgRAGk~GtaiSflt~~ 624 (673)
T KOG0333|consen 545 TTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPA 624 (673)
T ss_pred EEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHHHhccccccccCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHH
Q 004900 366 DRRRMEFI 373 (724)
Q Consensus 366 D~~~~~~i 373 (724)
|...+..+
T Consensus 625 dt~v~ydL 632 (673)
T KOG0333|consen 625 DTAVFYDL 632 (673)
T ss_pred hhHHHHHH
Confidence 96644433
No 23
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-44 Score=385.63 Aligned_cols=335 Identities=22% Similarity=0.329 Sum_probs=274.3
Q ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---------CCC--eEEEEcCcH
Q 004900 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------KPG--IVLVVSPLI 88 (724)
Q Consensus 20 ~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---------~~~--~vLVlsPl~ 88 (724)
.++.+.+..++.. +||..++|.|..+|+.+++++|++|.++||+|||++|++|.+. .++ -+|||+|||
T Consensus 11 ~~L~~~l~~~l~~-~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTR 89 (567)
T KOG0345|consen 11 PPLSPWLLEALDE-SGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTR 89 (567)
T ss_pred CCccHHHHHHHHh-cCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcH
Confidence 3455999999988 7999999999999999999999999999999999999999974 123 589999999
Q ss_pred HHHHHHHHHHHHc-----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhh----hhcCCc
Q 004900 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLL 159 (724)
Q Consensus 89 aL~~qqv~~l~~~-----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~----~~~~~l 159 (724)
+|+.|..+.+..+ .+.+..+.++.+......... .. ..+|+++ |||++.++.+. .+...+
T Consensus 90 ELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fk---ee--~~nIlVg------TPGRL~di~~~~~~~l~~rsL 158 (567)
T KOG0345|consen 90 ELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFK---EE--GPNILVG------TPGRLLDILQREAEKLSFRSL 158 (567)
T ss_pred HHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHH---Hh--CCcEEEe------CchhHHHHHhchhhhcccccc
Confidence 9999988877664 345777777755544433332 22 2455555 55555555333 445569
Q ss_pred cEEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCC----C---c
Q 004900 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR----P---N 231 (724)
Q Consensus 160 ~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r----~---n 231 (724)
.++|+||||+++++|+. ..+..+...+| .+..=+||||.+..+.+ ....|+.||+.+...... | .
T Consensus 159 e~LVLDEADrLldmgFe-----~~~n~ILs~LPKQRRTGLFSATq~~~v~d--L~raGLRNpv~V~V~~k~~~~tPS~L~ 231 (567)
T KOG0345|consen 159 EILVLDEADRLLDMGFE-----ASVNTILSFLPKQRRTGLFSATQTQEVED--LARAGLRNPVRVSVKEKSKSATPSSLA 231 (567)
T ss_pred ceEEecchHhHhcccHH-----HHHHHHHHhcccccccccccchhhHHHHH--HHHhhccCceeeeecccccccCchhhc
Confidence 99999999999999954 55677777778 46678899999999876 555689999876543322 2 2
Q ss_pred eEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC--CCceeeecCCCCHHHHHHHHHHhhcCCc
Q 004900 232 LFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRK 309 (724)
Q Consensus 232 i~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~--gi~v~~~H~~l~~~eR~~vl~~F~~g~~ 309 (724)
++|.+.. .+.++..|.++|......++|||++|...++..+..|... ...+..+||.|.+..|..+++.|.+..-
T Consensus 232 ~~Y~v~~---a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~ 308 (567)
T KOG0345|consen 232 LEYLVCE---ADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSN 308 (567)
T ss_pred ceeeEec---HHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccC
Confidence 3444333 3688999999999988899999999999999999999875 6778999999999999999999999888
Q ss_pred eEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHh
Q 004900 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 310 ~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
.||+|||++++|||+|+|++||+||+|.++..|+||+||+||.|..|.+++|+.+.+..++.++--.
T Consensus 309 ~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~ 375 (567)
T KOG0345|consen 309 GVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGREGNAIVFLNPREEAYVEFLRIK 375 (567)
T ss_pred ceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccCccceEEEecccHHHHHHHHHhc
Confidence 8999999999999999999999999999999999999999999999999999999888888776543
No 24
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6e-45 Score=366.17 Aligned_cols=348 Identities=20% Similarity=0.317 Sum_probs=278.6
Q ss_pred cccccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEE
Q 004900 10 STSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLV 83 (724)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLV 83 (724)
.......|.++++.+++++.+.. +||+.|..+|..||+.+++|+|+++++..|+|||.+|.+..+. +.-.+||
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~-yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~li 100 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYA-YGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALI 100 (400)
T ss_pred CcccccchhhcCchHHHHHHHHH-hccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccccceeeEEE
Confidence 34557789999999999999999 5999999999999999999999999999999999998877664 3567999
Q ss_pred EcCcHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh--hhhcC
Q 004900 84 VSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRG 157 (724)
Q Consensus 84 lsPl~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~--~~~~~ 157 (724)
++|||+|+.|.-..+..+| +++....++.+.++.-.. +. ....++. .|||+..++.+ ....+
T Consensus 101 lsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikk---ld---~G~hvVs------GtPGrv~dmikr~~L~tr 168 (400)
T KOG0328|consen 101 LSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKK---LD---YGQHVVS------GTPGRVLDMIKRRSLRTR 168 (400)
T ss_pred ecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhh---hc---ccceEee------CCCchHHHHHHhcccccc
Confidence 9999999999888888865 444333333333322111 11 1234444 45555444432 33345
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC---CCceE
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLF 233 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~---r~ni~ 233 (724)
.+.++|+||||.+++.| |. .++-.+.+.+| +.|++++|||++.++......+ +.+|+.+....+ ..-+.
T Consensus 169 ~vkmlVLDEaDemL~kg--fk---~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kf--mtdpvrilvkrdeltlEgIK 241 (400)
T KOG0328|consen 169 AVKMLVLDEADEMLNKG--FK---EQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKF--MTDPVRILVKRDELTLEGIK 241 (400)
T ss_pred ceeEEEeccHHHHHHhh--HH---HHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHh--cCCceeEEEecCCCchhhhh
Confidence 58999999999999877 33 34445555555 8999999999999998855554 567765443322 22233
Q ss_pred EEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEE
Q 004900 234 YEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (724)
Q Consensus 234 ~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLV 313 (724)
..+...+..+.++..|+++.....-..++|||+|++.++.|.+.+++..+.+...||+|++++|..++++|++|+.+||+
T Consensus 242 qf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLi 321 (400)
T KOG0328|consen 242 QFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLI 321 (400)
T ss_pred hheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEE
Confidence 33333444567889999888877777899999999999999999999999999999999999999999999999999999
Q ss_pred EccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 314 ATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 314 AT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
+|++.++|||+|.|.+|||||+|.+.+.|+||+||.||.|..|.++-|+..+|.+.++.+.+..
T Consensus 322 tTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdieq~y 385 (400)
T KOG0328|consen 322 TTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYY 385 (400)
T ss_pred EechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999888777643
No 25
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=3.9e-44 Score=423.62 Aligned_cols=338 Identities=20% Similarity=0.213 Sum_probs=250.1
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC-----CCeEEEEcCcHHHHHHHH
Q 004900 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQV 95 (724)
Q Consensus 21 ~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~-----~~~vLVlsPl~aL~~qqv 95 (724)
.+++++.+.|++ .||..|+++|.++|+.+++|+|+++.+|||+|||+||++|++.. ...+|||+||++|+.||.
T Consensus 20 ~l~~~l~~~L~~-~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~ 98 (742)
T TIGR03817 20 WAHPDVVAALEA-AGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQL 98 (742)
T ss_pred cCCHHHHHHHHH-cCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHH
Confidence 456899999987 69999999999999999999999999999999999999999852 468999999999999999
Q ss_pred HHHHHc---CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 96 IGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 96 ~~l~~~---gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
..++.+ ++.+..+.+......+..+. . ..+|+++||+++..........-......+++|||||||.+..
T Consensus 99 ~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~----~---~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 99 RAVRELTLRGVRPATYDGDTPTEERRWAR----E---HARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHhccCCeEEEEEeCCCCHHHHHHHh----c---CCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999986 45566666665554433222 1 2689999998875321110000001135589999999999865
Q ss_pred -CCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC--CCceEEEEEec---------
Q 004900 173 -WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN--RPNLFYEVRYK--------- 239 (724)
Q Consensus 173 -~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~--r~ni~~~v~~~--------- 239 (724)
+|.++...+.+|..+...++ +.+++++|||.++... .....++ .+..+..... +....+.+...
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g--~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~ 248 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIG--APVVAVTEDGSPRGARTVALWEPPLTELTGEN 248 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcC--CCeEEECCCCCCcCceEEEEecCCcccccccc
Confidence 22223333444555554444 5789999999988743 2333333 3333322111 11222211111
Q ss_pred ------cchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC--------CCceeeecCCCCHHHHHHHHHHhh
Q 004900 240 ------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWI 305 (724)
Q Consensus 240 ------~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~--------gi~v~~~H~~l~~~eR~~vl~~F~ 305 (724)
.....+...+..+++. +.++||||+|++.|+.++..|+.. +..+..|||++++++|..++++|+
T Consensus 249 ~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~ 326 (742)
T TIGR03817 249 GAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR 326 (742)
T ss_pred ccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH
Confidence 0112344556666654 468999999999999999998763 567889999999999999999999
Q ss_pred cCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEcc--ccHHHHH
Q 004900 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM--DDRRRME 371 (724)
Q Consensus 306 ~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~--~D~~~~~ 371 (724)
+|++++||||+++++|||+|+|++||||++|.+++.|+||+|||||.|..|.++++... .|...+.
T Consensus 327 ~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~ 394 (742)
T TIGR03817 327 DGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVH 394 (742)
T ss_pred cCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999863 4443333
No 26
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-44 Score=386.54 Aligned_cols=343 Identities=22% Similarity=0.355 Sum_probs=273.0
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC---------CCeEEEE
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVV 84 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~---------~~~vLVl 84 (724)
...|..+.++..+++++.. +||..|+|+|..+|+..+.|+|++.+|.||+|||.+|++|+|.+ ..+||||
T Consensus 180 ~~sF~~mNLSRPlLka~~~-lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL 258 (691)
T KOG0338|consen 180 NESFQSMNLSRPLLKACST-LGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVL 258 (691)
T ss_pred hhhHHhcccchHHHHHHHh-cCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEE
Confidence 4578889999999999988 89999999999999999999999999999999999999999863 3479999
Q ss_pred cCcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHH-HHHHhh--hhcC
Q 004900 85 SPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM-SKLKKI--HSRG 157 (724)
Q Consensus 85 sPl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l-~~L~~~--~~~~ 157 (724)
+|||+|+.|.....+.+ .|.+....++.........+.. . .+|++ +|||++ ..+.+. .+..
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs----~--PDIVI------ATPGRlIDHlrNs~sf~ld 326 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRS----R--PDIVI------ATPGRLIDHLRNSPSFNLD 326 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhh----C--CCEEE------ecchhHHHHhccCCCcccc
Confidence 99999998877665553 3555555566666555444332 2 44544 555543 333222 2344
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC---CCce-
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNL- 232 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~---r~ni- 232 (724)
.+.++|+||||+|++.| |+. .|.++.+.+| ++|.++||||++.++.. ...+.|..|+.+....+ .+++
T Consensus 327 siEVLvlDEADRMLeeg--Fad---emnEii~lcpk~RQTmLFSATMteeVkd--L~slSL~kPvrifvd~~~~~a~~Lt 399 (691)
T KOG0338|consen 327 SIEVLVLDEADRMLEEG--FAD---EMNEIIRLCPKNRQTMLFSATMTEEVKD--LASLSLNKPVRIFVDPNKDTAPKLT 399 (691)
T ss_pred ceeEEEechHHHHHHHH--HHH---HHHHHHHhccccccceeehhhhHHHHHH--HHHhhcCCCeEEEeCCccccchhhh
Confidence 58889999999999988 554 4566666666 78999999999999877 45567788875543322 1222
Q ss_pred --EEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCce
Q 004900 233 --FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (724)
Q Consensus 233 --~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~ 310 (724)
+..++... ..+.-.-|..++...-...+|||+.|++.|..+--.|.-.|+++..+||.+++.+|...++.|++++++
T Consensus 400 QEFiRIR~~r-e~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eid 478 (691)
T KOG0338|consen 400 QEFIRIRPKR-EGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEID 478 (691)
T ss_pred HHHheecccc-ccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCC
Confidence 23333221 112223334444444456799999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 311 VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
|||||+++++|+|+++|..||||.+|.+.+.|+||+||+.|+|..|.+|+|+..+|+..++.+++..
T Consensus 479 vLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~iik~~ 545 (691)
T KOG0338|consen 479 VLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEIIKSS 545 (691)
T ss_pred EEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999998874
No 27
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=9e-44 Score=381.33 Aligned_cols=344 Identities=20% Similarity=0.241 Sum_probs=272.4
Q ss_pred ccccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC----------CCe
Q 004900 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGI 80 (724)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~----------~~~ 80 (724)
......|....+++..++++++ +||..++++|...|+.++.|+|+++.|-||+|||++|+||++.. +-.
T Consensus 78 ~~~~~~f~~~~LS~~t~kAi~~-~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~ 156 (543)
T KOG0342|consen 78 ITTTFRFEEGSLSPLTLKAIKE-MGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTG 156 (543)
T ss_pred hhhhhHhhccccCHHHHHHHHh-cCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCee
Confidence 4456778889999999999999 79999999999999999999999999999999999999999851 336
Q ss_pred EEEEcCcHHHHHHHHHHHHHc-----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhh-
Q 004900 81 VLVVSPLIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIH- 154 (724)
Q Consensus 81 vLVlsPl~aL~~qqv~~l~~~-----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~- 154 (724)
+|||||||+|+.|....++.+ ++.+..+.++..... ..+.+.. .+++++.||-.+ .+..+..
T Consensus 157 vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~---e~~kl~k---~~niliATPGRL------lDHlqNt~ 224 (543)
T KOG0342|consen 157 VLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSV---EADKLVK---GCNILIATPGRL------LDHLQNTS 224 (543)
T ss_pred EEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchH---HHHHhhc---cccEEEeCCchH------HhHhhcCC
Confidence 899999999999999888773 344444444333221 1222222 366766666543 3221111
Q ss_pred --hcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC----
Q 004900 155 --SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---- 228 (724)
Q Consensus 155 --~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~---- 228 (724)
-...+.++|+||||++++.| |+.+..++..+.. ..++.++||||.+++|.+...-.|.- ++..+.....
T Consensus 225 ~f~~r~~k~lvlDEADrlLd~G--F~~di~~Ii~~lp--k~rqt~LFSAT~~~kV~~l~~~~L~~-d~~~v~~~d~~~~~ 299 (543)
T KOG0342|consen 225 GFLFRNLKCLVLDEADRLLDIG--FEEDVEQIIKILP--KQRQTLLFSATQPSKVKDLARGALKR-DPVFVNVDDGGERE 299 (543)
T ss_pred cchhhccceeEeecchhhhhcc--cHHHHHHHHHhcc--ccceeeEeeCCCcHHHHHHHHHhhcC-CceEeecCCCCCcc
Confidence 01236789999999999999 7877766644433 27899999999999998744444433 5655543221
Q ss_pred ---CCceEEEEEeccchhhHHHHHHHHHHhcCC-ceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHh
Q 004900 229 ---RPNLFYEVRYKDLLDDAYADLCSVLKANGD-TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304 (724)
Q Consensus 229 ---r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~-~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F 304 (724)
+-+--|.+... +..+..+..+|+++.. .++||||.|...+..+++.|....++|..+||++++..|..+..+|
T Consensus 300 The~l~Qgyvv~~~---~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F 376 (543)
T KOG0342|consen 300 THERLEQGYVVAPS---DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEF 376 (543)
T ss_pred hhhcccceEEeccc---cchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHH
Confidence 12222333333 3447778888887765 8899999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHH
Q 004900 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 305 ~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~ 375 (724)
.+.+.-|||||++.++|+|+|+|++||+||+|.++++|+||+||+||.|..|.++++..+.+...++++-+
T Consensus 377 ~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr~LK~ 447 (543)
T KOG0342|consen 377 CKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLRYLKK 447 (543)
T ss_pred hhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998888763
No 28
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.8e-43 Score=369.76 Aligned_cols=338 Identities=21% Similarity=0.326 Sum_probs=275.6
Q ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------------CCeEEEEcCc
Q 004900 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGIVLVVSPL 87 (724)
Q Consensus 20 ~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------------~~~vLVlsPl 87 (724)
|.--+++...+++ .||..|+|+|.+|++.++.|+|++.+|.||+|||++|++|.+.. +..+||++||
T Consensus 225 Fq~~pevmenIkK-~GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~pt 303 (629)
T KOG0336|consen 225 FQCYPEVMENIKK-TGFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPT 303 (629)
T ss_pred HhhhHHHHHHHHh-ccCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEecc
Confidence 5556788888888 59999999999999999999999999999999999999998742 4679999999
Q ss_pred HHHHHHHHHHHHH---cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH--HhhhhcCCccEE
Q 004900 88 IALMENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLLNLV 162 (724)
Q Consensus 88 ~aL~~qqv~~l~~---~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L--~~~~~~~~l~lI 162 (724)
++|+.|.--...+ .|....++.++....+. ..++..+ +.++ ++||+++.+| ....++..+.++
T Consensus 304 reLalqie~e~~kysyng~ksvc~ygggnR~eq---ie~lkrg---veii------iatPgrlndL~~~n~i~l~siTYl 371 (629)
T KOG0336|consen 304 RELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQ---IEDLKRG---VEII------IATPGRLNDLQMDNVINLASITYL 371 (629)
T ss_pred HHHHHHHHhHHhHhhhcCcceEEEecCCCchhH---HHHHhcC---ceEE------eeCCchHhhhhhcCeeeeeeeEEE
Confidence 9999887666555 36677777766655443 3344433 4554 4555665555 355566778999
Q ss_pred EEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeE-eeccCCCCceEE--EEEec
Q 004900 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFY--EVRYK 239 (724)
Q Consensus 163 VIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~v-i~~s~~r~ni~~--~v~~~ 239 (724)
|+||||.|+++| |.|..+++ +....|+.++++-|||+++.|++....+ +.+|.+ +..+.+...... .....
T Consensus 372 VlDEADrMLDMg--FEpqIrki--lldiRPDRqtvmTSATWP~~VrrLa~sY--~Kep~~v~vGsLdL~a~~sVkQ~i~v 445 (629)
T KOG0336|consen 372 VLDEADRMLDMG--FEPQIRKI--LLDIRPDRQTVMTSATWPEGVRRLAQSY--LKEPMIVYVGSLDLVAVKSVKQNIIV 445 (629)
T ss_pred Eecchhhhhccc--ccHHHHHH--hhhcCCcceeeeecccCchHHHHHHHHh--hhCceEEEecccceeeeeeeeeeEEe
Confidence 999999999999 88888877 6777899999999999999998855544 567764 344444321111 11123
Q ss_pred cchhhHHHHHHHHHHhc-CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc
Q 004900 240 DLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (724)
Q Consensus 240 ~~~~~k~~~L~~lLk~~-~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~ 318 (724)
....++++.+..+++.. ...++||||..+..++.|...|.-.|+.+-.+||+-++.+|+..++.|++|+++|||||+.+
T Consensus 446 ~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDla 525 (629)
T KOG0336|consen 446 TTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLA 525 (629)
T ss_pred cccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechh
Confidence 33456777777777764 46789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHh
Q 004900 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 319 g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
++|+|+|||.+|++||+|.+++.|+||+||+||+|..|.++.|+...|+...+.+++-
T Consensus 526 SRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~I 583 (629)
T KOG0336|consen 526 SRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQI 583 (629)
T ss_pred hcCCCchhcceeeccCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999887766653
No 29
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-43 Score=382.42 Aligned_cols=343 Identities=22% Similarity=0.310 Sum_probs=278.5
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC----------CCeEE
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVL 82 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~----------~~~vL 82 (724)
....|.++++.....+.|++ -+|..++.+|.++|+..+.|+|++..|.||+||||+|++|.+.+ +-=+|
T Consensus 67 ~~~kF~dlpls~~t~kgLke-~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKE-AKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhh-cCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeE
Confidence 35679999999999999999 49999999999999999999999999999999999999999863 33489
Q ss_pred EEcCcHHHHHHHHHHHHHcCCc----eeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH--hhhhc
Q 004900 83 VVSPLIALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSR 156 (724)
Q Consensus 83 VlsPl~aL~~qqv~~l~~~gi~----~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~--~~~~~ 156 (724)
||+|||+|+.|..+.|++.|-. +..+.++.....-. ..+ ..++||+|||..+.. .+. -..+.
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~---eRi----~~mNILVCTPGRLLQ-----Hmde~~~f~t 213 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFEL---ERI----SQMNILVCTPGRLLQ-----HMDENPNFST 213 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHH---Hhh----hcCCeEEechHHHHH-----HhhhcCCCCC
Confidence 9999999999999999997643 44444443322211 111 247788777765432 221 12234
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccC----CCC-
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF----NRP- 230 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~----~r~- 230 (724)
..+.++|+||||+++++| |.. .|..+...+| ..|.++||||.+..+.+ ...|.+.+|..+.... ..|
T Consensus 214 ~~lQmLvLDEADR~LDMG--Fk~---tL~~Ii~~lP~~RQTLLFSATqt~svkd--LaRLsL~dP~~vsvhe~a~~atP~ 286 (758)
T KOG0343|consen 214 SNLQMLVLDEADRMLDMG--FKK---TLNAIIENLPKKRQTLLFSATQTKSVKD--LARLSLKDPVYVSVHENAVAATPS 286 (758)
T ss_pred CcceEEEeccHHHHHHHh--HHH---HHHHHHHhCChhheeeeeecccchhHHH--HHHhhcCCCcEEEEeccccccChh
Confidence 558999999999999999 544 4566666666 78999999999999877 5667888988665431 122
Q ss_pred ceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC--CCceeeecCCCCHHHHHHHHHHhhcCC
Q 004900 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSR 308 (724)
Q Consensus 231 ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~--gi~v~~~H~~l~~~eR~~vl~~F~~g~ 308 (724)
++...+... ...+++..|..+++.+...++|||+.|.+++..+++.++.. |++...+||+|.+..|..++.+|....
T Consensus 287 ~L~Q~y~~v-~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~ 365 (758)
T KOG0343|consen 287 NLQQSYVIV-PLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR 365 (758)
T ss_pred hhhheEEEE-ehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc
Confidence 332222222 23689999999999999999999999999999999999875 999999999999999999999999999
Q ss_pred ceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHH-HHHHHHh
Q 004900 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR-MEFILSK 376 (724)
Q Consensus 309 ~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~-~~~i~~~ 376 (724)
-.||+||+++++|+|+|.|++||++|+|.++++|+||+||+.|.+..|.+++++.+.+... +..+.+.
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~~~G~sll~L~psEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYKERGESLLMLTPSEEEAMLKKLQKK 434 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhcccCCCceEEEEcchhHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999999999999999999998444 4444443
No 30
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.7e-43 Score=360.84 Aligned_cols=352 Identities=20% Similarity=0.223 Sum_probs=268.3
Q ss_pred cccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEc
Q 004900 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVS 85 (724)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVls 85 (724)
.....|+.+++.+.+.+.|+. +|+..++|+|..+|+.+++|+|+|.+|.||+|||.+|.+|++.+ +-.++|++
T Consensus 4 ~t~~~F~~LGl~~Wlve~l~~-l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 4 KTAKPFSILGLSPWLVEQLKA-LGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred cccCchhhcCccHHHHHHHHH-hcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 345678899999999999998 89999999999999999999999999999999999999999975 45799999
Q ss_pred CcHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccE
Q 004900 86 PLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (724)
Q Consensus 86 Pl~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~l 161 (724)
||++|+.|..++|..+| +++.++.+++..-..... . ....+++++||+.++-+..-+.=.-.....++.+
T Consensus 83 PTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~----L--~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkf 156 (442)
T KOG0340|consen 83 PTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAI----L--SDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKF 156 (442)
T ss_pred chHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhh----c--ccCCCeEecCccccccccccCCccchhhhhceee
Confidence 99999999999998865 455555555543322211 1 2236788888887654321110001112344889
Q ss_pred EEEccccccccCCCCChHHHHHHHHHHhhCCC-CCEEEEeecCChhhHHHHHHhhccCC--CeEeeccCCC---Cce--E
Q 004900 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQN--PLVLKSSFNR---PNL--F 233 (724)
Q Consensus 162 IVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~-~pil~LSAT~~~~v~~di~~~l~l~~--~~vi~~s~~r---~ni--~ 233 (724)
+|+|||+.+.+-. |-. .|..+..-.|. ++.++||||.+..+...... .... +.++....+. ..+ .
T Consensus 157 lVlDEADrvL~~~--f~d---~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~--~i~k~~a~~~e~~~~vstvetL~q~ 229 (442)
T KOG0340|consen 157 LVLDEADRVLAGC--FPD---ILEGIEECLPKPRQTLLFSATITDTIKQLFGC--PITKSIAFELEVIDGVSTVETLYQG 229 (442)
T ss_pred EEecchhhhhccc--hhh---HHhhhhccCCCccceEEEEeehhhHHHHhhcC--CcccccceEEeccCCCCchhhhhhh
Confidence 9999999999855 433 34444555564 58999999998876542211 1112 1122111111 111 1
Q ss_pred EEEEeccchhhHHHHHHHHHHhc---CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCce
Q 004900 234 YEVRYKDLLDDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (724)
Q Consensus 234 ~~v~~~~~~~~k~~~L~~lLk~~---~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~ 310 (724)
|..... +.+-..|..+|+.+ ++..++||+++..+|+.|+..|+..++.+..+|+-|++++|...+.+|+++..+
T Consensus 230 yI~~~~---~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~ 306 (442)
T KOG0340|consen 230 YILVSI---DVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAAR 306 (442)
T ss_pred eeecch---hhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCcc
Confidence 222222 23333445555432 456899999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhccCC
Q 004900 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSK 380 (724)
Q Consensus 311 VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~ 380 (724)
|||||+++++|+|+|.|.+|||||+|.++.+|+||+||+.|+|..|.++.++...|...+..|.+.-+.+
T Consensus 307 iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~rDv~l~~aiE~~igkK 376 (442)
T KOG0340|consen 307 ILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQRDVELLQAIEEEIGKK 376 (442)
T ss_pred EEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechhhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999998888765543
No 31
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-42 Score=372.97 Aligned_cols=348 Identities=21% Similarity=0.278 Sum_probs=264.5
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------------CCe
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------PGI 80 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------------~~~ 80 (724)
.+..|..+++++.+.+.|.+.+++..++.+|.++|+.+++|+|++|.++||+|||++|++|+++. +..
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 46788999999999999999999999999999999999999999999999999999999999852 567
Q ss_pred EEEEcCcHHHHHHHHHHHHHcCCceeeecc--cchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH--Hhhhhc
Q 004900 81 VLVVSPLIALMENQVIGLKEKGIAGEFLSS--TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSR 156 (724)
Q Consensus 81 vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s--~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L--~~~~~~ 156 (724)
+|||+|||+|+.|.++.++++.-+...+.. .+....+...-..++.| ++||++||..+. +.| ......
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKG---iNILIgTPGRLv-----DHLknT~~i~~ 285 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKG---INILIGTPGRLV-----DHLKNTKSIKF 285 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcC---ceEEEcCchHHH-----HHHhccchhee
Confidence 999999999999999999886433322221 12222222222233333 677777765442 122 123334
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhh-------CC----CCCEEEEeecCChhhHHHHHHhhccCCCeEeec
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-------LP----DVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~-------~p----~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~ 225 (724)
.+|.+||+||||++++.| |..+...|-.+... .+ ..+-++||||++..|.+ ...+.+.+|+.+..
T Consensus 286 s~LRwlVlDEaDrlleLG--fekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~r--La~~sLkDpv~I~l 361 (708)
T KOG0348|consen 286 SRLRWLVLDEADRLLELG--FEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNR--LADLSLKDPVYISL 361 (708)
T ss_pred eeeeEEEecchhHHHhcc--chhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHH--HhhccccCceeeec
Confidence 558999999999999999 66666665444422 12 24579999999999877 56667788877651
Q ss_pred -----cCC----------CC-------------ce--EEEEEeccchhhHHHHHHH----HHHhcCCceEEEEecccccH
Q 004900 226 -----SFN----------RP-------------NL--FYEVRYKDLLDDAYADLCS----VLKANGDTCAIVYCLERTTC 271 (724)
Q Consensus 226 -----s~~----------r~-------------ni--~~~v~~~~~~~~k~~~L~~----lLk~~~~~~~IIf~~sr~~~ 271 (724)
..+ .+ ++ .|.|++.. -.+-.|.. ..+.....++|||+.+.+.+
T Consensus 362 d~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpK---LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~V 438 (708)
T KOG0348|consen 362 DKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPK---LRLVALAALLLNKVKFEEKQKMIVFFSCSDSV 438 (708)
T ss_pred cchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCc---hhHHHHHHHHHHHhhhhhhceeEEEEechhHH
Confidence 111 00 11 22222221 12222333 33445667899999999999
Q ss_pred HHHHHHHHhC----------------------CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcce
Q 004900 272 DELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329 (724)
Q Consensus 272 e~La~~L~~~----------------------gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~ 329 (724)
+.-+..|... +.++.-+||+|++++|..+++.|...+-.||+|||++++|+|+|+|++
T Consensus 439 eFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~ 518 (708)
T KOG0348|consen 439 EFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGL 518 (708)
T ss_pred HHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCe
Confidence 9999888642 224677999999999999999999988889999999999999999999
Q ss_pred EEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHH
Q 004900 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 330 VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~ 375 (724)
||.||+|.+.++|+||+||+.|.|..|.+++|+.+.+..++..+..
T Consensus 519 vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~ 564 (708)
T KOG0348|consen 519 VVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKK 564 (708)
T ss_pred EEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHh
Confidence 9999999999999999999999999999999999999887766544
No 32
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-43 Score=358.97 Aligned_cols=343 Identities=23% Similarity=0.308 Sum_probs=276.1
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCc
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl 87 (724)
...|+++.+..+++.-+.+ .||+.|.|+|+++|+.++.|+|+++-|..|+|||.+|.+|.+.+ .-.++|++|+
T Consensus 84 G~efEd~~Lkr~LLmgIfe-~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPt 162 (459)
T KOG0326|consen 84 GNEFEDYCLKRELLMGIFE-KGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPT 162 (459)
T ss_pred CccHHHhhhhHHHHHHHHH-hccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeec
Confidence 5678899999999999988 59999999999999999999999999999999999999999975 2368999999
Q ss_pred HHHHHHHHHHHHH----cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH--hhhhcCCccE
Q 004900 88 IALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNL 161 (724)
Q Consensus 88 ~aL~~qqv~~l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~--~~~~~~~l~l 161 (724)
++|+.|..+.++. .|+.+....++.+.. +++......+.+ +++||++..+|. .........+
T Consensus 163 relALQtSqvc~~lskh~~i~vmvttGGT~lr------DDI~Rl~~~VH~------~vgTPGRIlDL~~KgVa~ls~c~~ 230 (459)
T KOG0326|consen 163 RELALQTSQVCKELSKHLGIKVMVTTGGTSLR------DDIMRLNQTVHL------VVGTPGRILDLAKKGVADLSDCVI 230 (459)
T ss_pred chhhHHHHHHHHHHhcccCeEEEEecCCcccc------cceeeecCceEE------EEcCChhHHHHHhcccccchhceE
Confidence 9999987777666 456666655555432 233222233445 445556655553 2334455778
Q ss_pred EEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeec--cC--CCCceEEEE
Q 004900 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SF--NRPNLFYEV 236 (724)
Q Consensus 162 IVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~--s~--~r~ni~~~v 236 (724)
+|+||||.+++. +|.+... .+...+| +.+++++|||.+-.+...+.+.| .+|..+.. .. .--.-+|..
T Consensus 231 lV~DEADKlLs~--~F~~~~e---~li~~lP~~rQillySATFP~tVk~Fm~~~l--~kPy~INLM~eLtl~GvtQyYaf 303 (459)
T KOG0326|consen 231 LVMDEADKLLSV--DFQPIVE---KLISFLPKERQILLYSATFPLTVKGFMDRHL--KKPYEINLMEELTLKGVTQYYAF 303 (459)
T ss_pred EEechhhhhhch--hhhhHHH---HHHHhCCccceeeEEecccchhHHHHHHHhc--cCcceeehhhhhhhcchhhheee
Confidence 999999999874 4666554 4555666 78999999999998887666654 45554432 11 111223333
Q ss_pred EeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 237 ~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
+.. ..++.-|..++....-+..|||||+.+.+|-+|+.+.+.|++|.++|+.|-++.|..+...|++|.++.||||+
T Consensus 304 V~e---~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctD 380 (459)
T KOG0326|consen 304 VEE---RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTD 380 (459)
T ss_pred ech---hhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehh
Confidence 322 46777777777766667899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhccC
Q 004900 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQS 379 (724)
Q Consensus 317 a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~ 379 (724)
.|-+|||++.|++||+||+|++.++|+||+||+||.|..|.+|.+.+.+|+..+..|..+.+.
T Consensus 381 L~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGt 443 (459)
T KOG0326|consen 381 LFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGT 443 (459)
T ss_pred hhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999998887654
No 33
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=367.67 Aligned_cols=339 Identities=21% Similarity=0.313 Sum_probs=266.8
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-CcEEEEcCCCchHHHHHHHHHHcC---------------
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g-~dvlv~apTGsGKTl~~~lpal~~--------------- 77 (724)
...|..+.++.+++.+|.+ +||..|+++|..+|+++..| .|++..|.|||||||+|-||++.+
T Consensus 180 vsAW~~l~lp~~iL~aL~~-~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~ 258 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSN-LGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTS 258 (731)
T ss_pred hHHHhcCCCCHHHHHHHHh-cCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHH
Confidence 4567788999999999999 79999999999999999999 699999999999999999999862
Q ss_pred ----CCeEEEEcCcHHHHHHHHHHHHH----cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHH
Q 004900 78 ----PGIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK 149 (724)
Q Consensus 78 ----~~~vLVlsPl~aL~~qqv~~l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~ 149 (724)
....||++|||+|+.|...++.. -+|.+..+.++........++.. .| +| +++|||+++.
T Consensus 259 ~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p--~I------VVATPGRlwe 326 (731)
T KOG0347|consen 259 AKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RP--DI------VVATPGRLWE 326 (731)
T ss_pred hccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CC--CE------EEecchHHHH
Confidence 23599999999999999999877 37888888888887776666553 22 33 5667777666
Q ss_pred HHh-----hhhcCCccEEEEccccccccCCCCChHHHHHHHHHH--hhCCCCCEEEEeecCChhh---------------
Q 004900 150 LKK-----IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR--NYLPDVPILALTATAAPKV--------------- 207 (724)
Q Consensus 150 L~~-----~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~--~~~p~~pil~LSAT~~~~v--------------- 207 (724)
+.. +.+...+.++||||||+|.+-|| |...-..|..+. ...+..|.+.||||++-..
T Consensus 327 li~e~n~~l~~~k~vkcLVlDEaDRmvekgh-F~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~ 405 (731)
T KOG0347|consen 327 LIEEDNTHLGNFKKVKCLVLDEADRMVEKGH-FEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKED 405 (731)
T ss_pred HHHhhhhhhhhhhhceEEEEccHHHHhhhcc-HHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhh
Confidence 632 33445689999999999999997 533322222222 1223678999999977422
Q ss_pred -----HHHHHHhhccCCC-eEeeccCCCCceEEEEEeccchhhHHHHHHH----------------HHHhcCCceEEEEe
Q 004900 208 -----QKDVMESLCLQNP-LVLKSSFNRPNLFYEVRYKDLLDDAYADLCS----------------VLKANGDTCAIVYC 265 (724)
Q Consensus 208 -----~~di~~~l~l~~~-~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~----------------lLk~~~~~~~IIf~ 265 (724)
...+++.+++..+ .++..... ......|.+ +|..+ ++++||||
T Consensus 406 ~~~~kiq~Lmk~ig~~~kpkiiD~t~q--------------~~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~ 470 (731)
T KOG0347|consen 406 ELNAKIQHLMKKIGFRGKPKIIDLTPQ--------------SATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFC 470 (731)
T ss_pred hhhHHHHHHHHHhCccCCCeeEecCcc--------------hhHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEe
Confidence 2233444444432 33322111 111122211 22233 36799999
Q ss_pred cccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHH
Q 004900 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQE 345 (724)
Q Consensus 266 ~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr 345 (724)
|++..+.+|+-+|...++....+|+.|.+++|...+++|.+....|||||+++++|+|+|+|.+||||.+|.+.+-|+||
T Consensus 471 NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHR 550 (731)
T KOG0347|consen 471 NSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHR 550 (731)
T ss_pred chHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcccCCCCCCCeEEEEEccccHHHHHHHHHhccCCC
Q 004900 346 SGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKN 381 (724)
Q Consensus 346 ~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~~ 381 (724)
+||+.|++..|..++++++.+...+..+-+....+.
T Consensus 551 SGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k~~ 586 (731)
T KOG0347|consen 551 SGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKKKE 586 (731)
T ss_pred ccccccccCCCeEEEEeChHHhHHHHHHHHHHhhcc
Confidence 999999999999999999999988887766554443
No 34
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.4e-41 Score=356.25 Aligned_cols=346 Identities=22% Similarity=0.320 Sum_probs=273.1
Q ss_pred ccccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------------C
Q 004900 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------------P 78 (724)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------------~ 78 (724)
......|+++++.+.+++++.+ .||+.++-+|..+|+.+++|+|+++.|.||+|||++|+||.++. +
T Consensus 15 e~~~ktFe~~gLD~RllkAi~~-lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~ 93 (569)
T KOG0346|consen 15 ESKEKTFEEFGLDSRLLKAITK-LGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQG 93 (569)
T ss_pred hhhhccHHHhCCCHHHHHHHHH-hCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhccccccc
Confidence 3334689999999999999999 69999999999999999999999999999999999999999852 5
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHc------CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh
Q 004900 79 GIVLVVSPLIALMENQVIGLKEK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152 (724)
Q Consensus 79 ~~vLVlsPl~aL~~qqv~~l~~~------gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~ 152 (724)
..++|++||++|++|.+..+.++ .+++.-+.+.++......++. . ..+|+++||-.+ ..+..
T Consensus 94 ~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~----d--~pdIvV~TP~~l------l~~~~ 161 (569)
T KOG0346|consen 94 PSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALM----D--LPDIVVATPAKL------LRHLA 161 (569)
T ss_pred ceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHc----c--CCCeEEeChHHH------HHHHh
Confidence 67999999999999988776653 344444444444443332222 1 245666666533 22211
Q ss_pred ---hhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccC-
Q 004900 153 ---IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF- 227 (724)
Q Consensus 153 ---~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~- 227 (724)
......+.++|+||||.+..+|+ .. .+..+...+| ..|.++||||++.++.. .+.+.+.+|+++....
T Consensus 162 ~~~~~~~~~l~~LVvDEADLllsfGY--ee---dlk~l~~~LPr~~Q~~LmSATl~dDv~~--LKkL~l~nPviLkl~e~ 234 (569)
T KOG0346|consen 162 AGVLEYLDSLSFLVVDEADLLLSFGY--EE---DLKKLRSHLPRIYQCFLMSATLSDDVQA--LKKLFLHNPVILKLTEG 234 (569)
T ss_pred hccchhhhheeeEEechhhhhhhccc--HH---HHHHHHHhCCchhhheeehhhhhhHHHH--HHHHhccCCeEEEeccc
Confidence 12345589999999999999994 44 4555666666 56899999999999877 7778889999876532
Q ss_pred CCC--ceEEEEEeccchhhHHHHHHHHHHhc-CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHh
Q 004900 228 NRP--NLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304 (724)
Q Consensus 228 ~r~--ni~~~v~~~~~~~~k~~~L~~lLk~~-~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F 304 (724)
+.+ +-..+........+++..+..+++-. -.++.|||+||+..|..|--.|...|++.+++.|.|+...|..++++|
T Consensus 235 el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QF 314 (569)
T KOG0346|consen 235 ELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQF 314 (569)
T ss_pred cCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHh
Confidence 222 22222222333577888887777642 345799999999999999999999999999999999999999999999
Q ss_pred hcCCceEEEEcc-----------------------------------ccccccCCCCcceEEeeCCCCCHHHHHHHHccc
Q 004900 305 ISSRKQVVVATV-----------------------------------AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349 (724)
Q Consensus 305 ~~g~~~VLVAT~-----------------------------------a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRA 349 (724)
..|-++|||||| -..+|||+.+|..|||||+|.+..+|+||+||+
T Consensus 315 NkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRT 394 (569)
T KOG0346|consen 315 NKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRT 394 (569)
T ss_pred hCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCCchHHHHHhcccc
Confidence 999999999998 134899999999999999999999999999999
Q ss_pred CCCCCCCeEEEEEccccHH---HHHHHHHh
Q 004900 350 GRDQLPSKSLLYYGMDDRR---RMEFILSK 376 (724)
Q Consensus 350 GRdG~~g~~il~~~~~D~~---~~~~i~~~ 376 (724)
+|.|++|.++.|+.+.+.. .++.++..
T Consensus 395 aRg~n~GtalSfv~P~e~~g~~~le~~~~d 424 (569)
T KOG0346|consen 395 ARGNNKGTALSFVSPKEEFGKESLESILKD 424 (569)
T ss_pred ccCCCCCceEEEecchHHhhhhHHHHHHhh
Confidence 9999999999999998876 44444443
No 35
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-41 Score=364.57 Aligned_cols=341 Identities=21% Similarity=0.298 Sum_probs=264.9
Q ss_pred cCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC----------------CC
Q 004900 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK----------------PG 79 (724)
Q Consensus 16 ~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~----------------~~ 79 (724)
.|..-.+.+.+...++. -|+..++|+|+.+|+.+..|+|++++|+||+|||.+|++|++.. .+
T Consensus 75 ~f~~~~l~~~l~~ni~~-~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P 153 (482)
T KOG0335|consen 75 TFDEAILGEALAGNIKR-SGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYP 153 (482)
T ss_pred cccccchhHHHhhcccc-ccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCC
Confidence 44455666667777666 59999999999999999999999999999999999999999841 26
Q ss_pred eEEEEcCcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH--hh
Q 004900 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KI 153 (724)
Q Consensus 80 ~vLVlsPl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~--~~ 153 (724)
.+||++||++|+.|.+.+.+++ ++......++..... ........++|+++||- .+..+. ..
T Consensus 154 ~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~------q~~~~~~gcdIlvaTpG------rL~d~~e~g~ 221 (482)
T KOG0335|consen 154 RALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA------QLRFIKRGCDILVATPG------RLKDLIERGK 221 (482)
T ss_pred ceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh------hhhhhccCccEEEecCc------hhhhhhhcce
Confidence 8999999999999999999885 344444444422221 11222234677666654 444442 22
Q ss_pred hhcCCccEEEEcccccccc-CCCCChHHHHHHHHHHhhC--CCCCEEEEeecCChhhHHHHHHhhccCCCe---EeeccC
Q 004900 154 HSRGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQNPL---VLKSSF 227 (724)
Q Consensus 154 ~~~~~l~lIVIDEAH~l~~-~G~dFrp~y~~L~~l~~~~--p~~pil~LSAT~~~~v~~di~~~l~l~~~~---vi~~s~ 227 (724)
..+..+.+||+||||.|++ +| |-|..+.+-.-.... .+.+.++||||.+..+...+...+ ..+.. +-+.+.
T Consensus 222 i~l~~~k~~vLDEADrMlD~mg--F~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl-~~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMG--FEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFL-KDNYIFLAVGRVGS 298 (482)
T ss_pred eehhhCcEEEecchHHhhhhcc--ccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHh-hccceEEEEeeecc
Confidence 2334477999999999999 77 778777664333332 267899999999999888444433 22233 234456
Q ss_pred CCCceEEEEEeccchhhHHHHHHHHHHhcC----Cc-----eEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHH
Q 004900 228 NRPNLFYEVRYKDLLDDAYADLCSVLKANG----DT-----CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARS 298 (724)
Q Consensus 228 ~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~----~~-----~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~ 298 (724)
...|+...+..... .++...|.++|.... .. .++|||.|++.|..++..|...++++..+||..++.+|.
T Consensus 299 ~~~ni~q~i~~V~~-~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~ 377 (482)
T KOG0335|consen 299 TSENITQKILFVNE-MEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIERE 377 (482)
T ss_pred ccccceeEeeeecc-hhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHH
Confidence 67788777776653 355666666665322 22 799999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHH
Q 004900 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (724)
Q Consensus 299 ~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i 373 (724)
+.++.|++|.+.|||||+++++|+|+|+|++||+||+|.+..+|+||+||+||.|..|.++.|++..+....+.+
T Consensus 378 ~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L 452 (482)
T KOG0335|consen 378 QALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKAL 452 (482)
T ss_pred HHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccCCCCceeEEEeccccchhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999996665544433
No 36
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=3.3e-39 Score=401.29 Aligned_cols=333 Identities=16% Similarity=0.215 Sum_probs=261.3
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHH
Q 004900 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (724)
Q Consensus 23 ~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~ 99 (724)
-+++.+.+++.+|| +|++.|.++|+.++.|+|++++||||+|||++++++++. .+..+|||+||++|+.|+++.++
T Consensus 65 ~~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 65 VEEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred HHHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHH
Confidence 45677888888999 599999999999999999999999999999988877764 35689999999999999999998
Q ss_pred Hc------CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccC
Q 004900 100 EK------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (724)
Q Consensus 100 ~~------gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~ 173 (724)
.+ ++.+..++++.........+..+..+. .+|+++||+.+... ... .. ...+++|||||||+|++|
T Consensus 144 ~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~--~dILV~TPgrL~~~--~~~---l~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 144 SFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGD--FDILVTTAQFLARN--FPE---MK-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECCchhHHh--HHH---Hh-hCCCCEEEEECceecccc
Confidence 84 456677888888777776666666554 78999999865421 111 11 255999999999999999
Q ss_pred CC---------CChHHHHH----H-------------------HHHHhhCCCCC--EEEEeecCChhhHHHHHHhhccCC
Q 004900 174 GH---------DFRPSYRK----L-------------------SSLRNYLPDVP--ILALTATAAPKVQKDVMESLCLQN 219 (724)
Q Consensus 174 G~---------dFrp~y~~----L-------------------~~l~~~~p~~p--il~LSAT~~~~v~~di~~~l~l~~ 219 (724)
|+ +|++++.. + ......+|+.+ ++.+|||+++. .++...+ .+
T Consensus 216 ~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~--~~ 291 (1638)
T PRK14701 216 SKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLY--RE 291 (1638)
T ss_pred ccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHh--hc
Confidence 88 89999864 1 11112334443 46688888864 2233332 45
Q ss_pred CeEeeccCCCCceEEEEEe---ccchhhHHHHHHHHHHhcCCceEEEEeccccc---HHHHHHHHHhCCCceeeecCCCC
Q 004900 220 PLVLKSSFNRPNLFYEVRY---KDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLN 293 (724)
Q Consensus 220 ~~vi~~s~~r~ni~~~v~~---~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~---~e~La~~L~~~gi~v~~~H~~l~ 293 (724)
+..+..+..++++...+.. .. ...+ ..|.++++.. +..+||||+|++. |+.++..|...|+++..+||+
T Consensus 292 ~l~f~v~~~~~~lr~i~~~yi~~~-~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-- 366 (1638)
T PRK14701 292 LLGFEVGSGRSALRNIVDVYLNPE-KIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-- 366 (1638)
T ss_pred CeEEEecCCCCCCCCcEEEEEECC-HHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch--
Confidence 5556666666554433222 22 1222 5677777766 4579999999886 489999999999999999995
Q ss_pred HHHHHHHHHHhhcCCceEEEEcc----ccccccCCCC-cceEEeeCCCC---CHHHHHHHH-------------cccCCC
Q 004900 294 DKARSSVLDDWISSRKQVVVATV----AFGMGIDRKD-VRLVCHFNIPK---SMEAFYQES-------------GRAGRD 352 (724)
Q Consensus 294 ~~eR~~vl~~F~~g~~~VLVAT~----a~g~GIDip~-V~~VI~~d~P~---S~~~yiQr~-------------GRAGRd 352 (724)
|..++++|++|+++|||||+ +++||||+|+ |++|||||+|+ +++.|+|.. ||+||+
T Consensus 367 ---R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~ 443 (1638)
T PRK14701 367 ---NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKE 443 (1638)
T ss_pred ---HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhccc
Confidence 88999999999999999995 7789999999 99999999999 999999988 999999
Q ss_pred CCCCeEEEEEccccHHHHHHHHHh
Q 004900 353 QLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 353 G~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
|.++.+++.+...+...++.++.+
T Consensus 444 g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 444 GIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CCcchhHHHhHHHHHHHHHHHhcc
Confidence 999999988888888888877664
No 37
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=3.2e-38 Score=377.24 Aligned_cols=321 Identities=21% Similarity=0.202 Sum_probs=253.3
Q ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CcEEEEcCCCchHHHHHHHHHH---cCCCeEEEEcCcHH
Q 004900 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (724)
Q Consensus 19 ~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g------~dvlv~apTGsGKTl~~~lpal---~~~~~vLVlsPl~a 89 (724)
.+.....+...+.+.|||. ++|.|.++|+.++.+ +|.++++|||+|||++|++|++ ..+..++|++||++
T Consensus 433 ~~~~~~~~~~~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~ 511 (926)
T TIGR00580 433 AFPPDLEWQQEFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTL 511 (926)
T ss_pred CCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHH
Confidence 3556678888888889996 999999999999875 7999999999999999998876 45789999999999
Q ss_pred HHHHHHHHHHH----cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEc
Q 004900 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (724)
Q Consensus 90 L~~qqv~~l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVID 165 (724)
|+.|++..+++ +++.+..+++.........+...+..+. ++|+++||.++. .......+++||||
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~--~dIVIGTp~ll~---------~~v~f~~L~llVID 580 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGK--IDILIGTHKLLQ---------KDVKFKDLGLLIID 580 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCC--ceEEEchHHHhh---------CCCCcccCCEEEee
Confidence 99999999887 3577777887777777777777777664 778999985442 12234568999999
Q ss_pred cccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc-CCCCceEEEEEeccchhh
Q 004900 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDLLDD 244 (724)
Q Consensus 166 EAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s-~~r~ni~~~v~~~~~~~~ 244 (724)
|+|++ |... ...+....+++++++||||+.+.+... ...++.++.++... ..+..+...+..... ..
T Consensus 581 Eahrf---gv~~------~~~L~~~~~~~~vL~~SATpiprtl~~--~l~g~~d~s~I~~~p~~R~~V~t~v~~~~~-~~ 648 (926)
T TIGR00580 581 EEQRF---GVKQ------KEKLKELRTSVDVLTLSATPIPRTLHM--SMSGIRDLSIIATPPEDRLPVRTFVMEYDP-EL 648 (926)
T ss_pred ccccc---chhH------HHHHHhcCCCCCEEEEecCCCHHHHHH--HHhcCCCcEEEecCCCCccceEEEEEecCH-HH
Confidence 99984 4322 223444456889999999999987663 33455666555443 344444433332221 11
Q ss_pred HHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC--CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccccc
Q 004900 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (724)
Q Consensus 245 k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~--gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GI 322 (724)
....+...+. .+++++|||++++.++.+++.|.+. ++++..+||+|++++|..++++|.+|+++|||||+++++||
T Consensus 649 i~~~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GI 726 (926)
T TIGR00580 649 VREAIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGI 726 (926)
T ss_pred HHHHHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhccc
Confidence 2223333333 3468999999999999999999985 78899999999999999999999999999999999999999
Q ss_pred CCCCcceEEeeCCCC-CHHHHHHHHcccCCCCCCCeEEEEEccc
Q 004900 323 DRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (724)
Q Consensus 323 Dip~V~~VI~~d~P~-S~~~yiQr~GRAGRdG~~g~~il~~~~~ 365 (724)
|+|++++||+++.|. +..+|+|++||+||.|+.|.|++++...
T Consensus 727 DIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 727 DIPNANTIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEECCc
Confidence 999999999999975 6889999999999999999999998654
No 38
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=9.1e-41 Score=347.45 Aligned_cols=333 Identities=21% Similarity=0.353 Sum_probs=256.5
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc--------------CC
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------------KP 78 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~--------------~~ 78 (724)
+...|.++..+..+++.|++ -|+.+++|+|.+.++.++.|+|+|.+|-||+|||++|.+|.+. .+
T Consensus 168 PIksF~eMKFP~~~L~~lk~-KGI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EG 246 (610)
T KOG0341|consen 168 PIKSFKEMKFPKPLLRGLKK-KGIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEG 246 (610)
T ss_pred chhhhhhccCCHHHHHHHHh-cCCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCC
Confidence 45567888889999999999 5999999999999999999999999999999999999999863 26
Q ss_pred CeEEEEcCcHHHHHHHHHHHHHc-------CCc---eeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHH
Q 004900 79 GIVLVVSPLIALMENQVIGLKEK-------GIA---GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148 (724)
Q Consensus 79 ~~vLVlsPl~aL~~qqv~~l~~~-------gi~---~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~ 148 (724)
+..|||||+|+|+.|..+-+..+ |.+ +..-.++....+... .+..| +.++ ++||+++.
T Consensus 247 P~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~---~v~~G---vHiv------VATPGRL~ 314 (610)
T KOG0341|consen 247 PYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLD---VVRRG---VHIV------VATPGRLM 314 (610)
T ss_pred CeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHH---HHhcC---eeEE------EcCcchHH
Confidence 78999999999999877665442 322 222223333333322 22222 5554 45556555
Q ss_pred HH--HhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc
Q 004900 149 KL--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS 226 (724)
Q Consensus 149 ~L--~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s 226 (724)
++ .+..++.-.+++++||||++.+.| |..+.+.+-.+-. ..+|.++||||.+..++..... .+-.|+.+..+
T Consensus 315 DmL~KK~~sLd~CRyL~lDEADRmiDmG--FEddir~iF~~FK--~QRQTLLFSATMP~KIQ~FAkS--ALVKPvtvNVG 388 (610)
T KOG0341|consen 315 DMLAKKIMSLDACRYLTLDEADRMIDMG--FEDDIRTIFSFFK--GQRQTLLFSATMPKKIQNFAKS--ALVKPVTVNVG 388 (610)
T ss_pred HHHHHhhccHHHHHHhhhhhHHHHhhcc--chhhHHHHHHHHh--hhhheeeeeccccHHHHHHHHh--hcccceEEecc
Confidence 54 233344446789999999999999 6666655533222 2688999999999998763333 34566655433
Q ss_pred C---CCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHH
Q 004900 227 F---NRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDD 303 (724)
Q Consensus 227 ~---~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~ 303 (724)
- ..-|+...+.+.. .+.++-.|.+.|+... .+++|||..+.+++.+.++|--.|+.+..+|||-++++|...++.
T Consensus 389 RAGAAsldViQevEyVk-qEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~a 466 (610)
T KOG0341|consen 389 RAGAASLDVIQEVEYVK-QEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEA 466 (610)
T ss_pred cccccchhHHHHHHHHH-hhhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHH
Confidence 1 1222222222222 2345666777776544 579999999999999999999999999999999999999999999
Q ss_pred hhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEcccc
Q 004900 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (724)
Q Consensus 304 F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D 366 (724)
|+.|+-+|||||++++.|+|+|+|.+|||||+|..+++|+||+||+||.|..|.+.+|.+...
T Consensus 467 fr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 467 FRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred HhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999999999999999999999999999999999999999999999999999999999998654
No 39
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.7e-38 Score=382.39 Aligned_cols=324 Identities=23% Similarity=0.282 Sum_probs=231.5
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------------CCCeEEEEcCcHH
Q 004900 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPGIVLVVSPLIA 89 (724)
Q Consensus 22 ~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------------~~~~vLVlsPl~a 89 (724)
+++.+...+++ +|..|+|+|.++|+.+++|+|++++||||+|||++|++|++. .+..+|||+||++
T Consensus 18 l~~~v~~~~~~--~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtra 95 (876)
T PRK13767 18 LRPYVREWFKE--KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRA 95 (876)
T ss_pred cCHHHHHHHHH--ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHH
Confidence 44667777776 677899999999999999999999999999999999999873 1346999999999
Q ss_pred HHHHHHHHHHH---------------c-CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhh
Q 004900 90 LMENQVIGLKE---------------K-GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153 (724)
Q Consensus 90 L~~qqv~~l~~---------------~-gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~ 153 (724)
|+.|+.+.+.. + ++.+...+++.....+...... ..+|+++|||.+..--....+.
T Consensus 96 La~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~------~p~IlVtTPE~L~~ll~~~~~~-- 167 (876)
T PRK13767 96 LNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKK------PPHILITTPESLAILLNSPKFR-- 167 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhC------CCCEEEecHHHHHHHhcChhHH--
Confidence 99999876542 1 4456667777666555443321 3689999999763110000111
Q ss_pred hhcCCccEEEEccccccccC--CCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhcc------CCCeEee
Q 004900 154 HSRGLLNLVAIDEAHCISSW--GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCL------QNPLVLK 224 (724)
Q Consensus 154 ~~~~~l~lIVIDEAH~l~~~--G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l------~~~~vi~ 224 (724)
.....+++|||||||.+.+. |..+... +..+.... ++.++++||||+++. .++..++.. ..+..+.
T Consensus 168 ~~l~~l~~VVIDE~H~l~~~~RG~~l~~~---L~rL~~l~~~~~q~IglSATl~~~--~~va~~L~~~~~~~~~r~~~iv 242 (876)
T PRK13767 168 EKLRTVKWVIVDEIHSLAENKRGVHLSLS---LERLEELAGGEFVRIGLSATIEPL--EEVAKFLVGYEDDGEPRDCEIV 242 (876)
T ss_pred HHHhcCCEEEEechhhhccCccHHHHHHH---HHHHHHhcCCCCeEEEEecccCCH--HHHHHHhcCccccCCCCceEEE
Confidence 12345899999999999863 3222222 33444444 467899999999863 344555532 1222222
Q ss_pred -ccCCCCceEEEEEec----------cchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC------CCceee
Q 004900 225 -SSFNRPNLFYEVRYK----------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------GISCAA 287 (724)
Q Consensus 225 -~s~~r~ni~~~v~~~----------~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~------gi~v~~ 287 (724)
..+.++ +...+... ......+..|..+++. +.++||||+|++.|+.++..|... +..+..
T Consensus 243 ~~~~~k~-~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~ 319 (876)
T PRK13767 243 DARFVKP-FDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGA 319 (876)
T ss_pred ccCCCcc-ceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceee
Confidence 222221 11111110 0112233444455543 457999999999999999999873 467899
Q ss_pred ecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCC-CCCCeEEEEEc
Q 004900 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYG 363 (724)
Q Consensus 288 ~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRd-G~~g~~il~~~ 363 (724)
+||+|+.++|..+++.|++|+++|||||+++++|||+|+|++||+++.|.++..|+||+||+||. |..+.++++..
T Consensus 320 hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~ 396 (876)
T PRK13767 320 HHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVV 396 (876)
T ss_pred eeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999986 44555555543
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-38 Score=376.75 Aligned_cols=331 Identities=21% Similarity=0.281 Sum_probs=245.5
Q ss_pred cCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHH
Q 004900 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (724)
Q Consensus 16 ~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~a-il~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~ 91 (724)
.++++++++.+.+.++. .|+.+|+|+|.++++. +..|+|++++||||+|||++|.+|++. .++++|||+|+++|+
T Consensus 2 ~~~~l~lp~~~~~~l~~-~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa 80 (737)
T PRK02362 2 KIAELPLPEGVIEFYEA-EGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALA 80 (737)
T ss_pred ChhhcCCCHHHHHHHHh-CCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHH
Confidence 35677888999999988 6999999999999998 778999999999999999999998764 578999999999999
Q ss_pred HHHHHHHHHc---CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccc
Q 004900 92 ENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (724)
Q Consensus 92 ~qqv~~l~~~---gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH 168 (724)
.|++..++.+ |+.+..+.+....... .+ ...+|+++|||.+..-... .......+++|||||+|
T Consensus 81 ~q~~~~~~~~~~~g~~v~~~tGd~~~~~~-----~l----~~~~IiV~Tpek~~~llr~----~~~~l~~v~lvViDE~H 147 (737)
T PRK02362 81 SEKFEEFERFEELGVRVGISTGDYDSRDE-----WL----GDNDIIVATSEKVDSLLRN----GAPWLDDITCVVVDEVH 147 (737)
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCcCcccc-----cc----CCCCEEEECHHHHHHHHhc----ChhhhhhcCEEEEECcc
Confidence 9999999886 7777776655432210 01 1367888888865331110 01123458999999999
Q ss_pred ccccCCCCChHHHHH-HHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCC------CeEeeccC-CCCceEEEE----
Q 004900 169 CISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN------PLVLKSSF-NRPNLFYEV---- 236 (724)
Q Consensus 169 ~l~~~G~dFrp~y~~-L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~------~~vi~~s~-~r~ni~~~v---- 236 (724)
++.+.+ +.+.|.. +..++...++.++++||||++.. .++..+++... |+.+.... ....+.+..
T Consensus 148 ~l~d~~--rg~~le~il~rl~~~~~~~qii~lSATl~n~--~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~~~~~ 223 (737)
T PRK02362 148 LIDSAN--RGPTLEVTLAKLRRLNPDLQVVALSATIGNA--DELADWLDAELVDSEWRPIDLREGVFYGGAIHFDDSQRE 223 (737)
T ss_pred ccCCCc--chHHHHHHHHHHHhcCCCCcEEEEcccCCCH--HHHHHHhCCCcccCCCCCCCCeeeEecCCeecccccccc
Confidence 998744 5566655 45566666789999999999763 45666665321 11110000 000000000
Q ss_pred EeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCC----------------------------------
Q 004900 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---------------------------------- 282 (724)
Q Consensus 237 ~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~g---------------------------------- 282 (724)
.........+..+.+.+. .+.++||||+|++.|+.++..|....
T Consensus 224 ~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~ 301 (737)
T PRK02362 224 VEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADC 301 (737)
T ss_pred CCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHH
Confidence 000011233344444443 35689999999999999998886431
Q ss_pred --CceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEe----eC-----CCCCHHHHHHHHcccCC
Q 004900 283 --ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-----IPKSMEAFYQESGRAGR 351 (724)
Q Consensus 283 --i~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~----~d-----~P~S~~~yiQr~GRAGR 351 (724)
..+..+||||++.+|..+++.|++|.++|||||+++++|||+|.+++||+ || .|.+..+|.||+|||||
T Consensus 302 l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR 381 (737)
T PRK02362 302 VAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGR 381 (737)
T ss_pred HHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCC
Confidence 25788999999999999999999999999999999999999999999997 66 68999999999999999
Q ss_pred CCCC--CeEEEEEcccc
Q 004900 352 DQLP--SKSLLYYGMDD 366 (724)
Q Consensus 352 dG~~--g~~il~~~~~D 366 (724)
.|.. |.+++++...+
T Consensus 382 ~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 382 PGLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCCCCCceEEEEecCch
Confidence 9975 88999887653
No 41
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1.6e-37 Score=365.66 Aligned_cols=317 Identities=21% Similarity=0.255 Sum_probs=247.4
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHH
Q 004900 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (724)
Q Consensus 22 ~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g------~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~ 92 (724)
....+.+.+...++|. |++.|.++|+.+..+ +++++++|||+|||++|++|++. .+..++|++||++|+.
T Consensus 246 ~~~~~~~~~~~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~ 324 (681)
T PRK10917 246 YDGELLKKFLASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAE 324 (681)
T ss_pred CChHHHHHHHHhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHH
Confidence 3456777788889995 999999999999876 47999999999999999998864 5779999999999999
Q ss_pred HHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccc
Q 004900 93 NQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (724)
Q Consensus 93 qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH 168 (724)
|+++.++++ |+++..++++.....+...+..+..+. ++|+++||..+... .....+++|||||+|
T Consensus 325 Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll~~~---------v~~~~l~lvVIDE~H 393 (681)
T PRK10917 325 QHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGE--ADIVIGTHALIQDD---------VEFHNLGLVIIDEQH 393 (681)
T ss_pred HHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCC--CCEEEchHHHhccc---------chhcccceEEEechh
Confidence 999998774 688899999998888888888877764 78888888766431 123458999999999
Q ss_pred ccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeec-cCCCCceEEEEEeccchhhHHH
Q 004900 169 CISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAYA 247 (724)
Q Consensus 169 ~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~-s~~r~ni~~~v~~~~~~~~k~~ 247 (724)
++ |..+|. .+.....+.++++||||+.+..... ...+..+...+.. +..+..+...+.........+.
T Consensus 394 rf---g~~qr~------~l~~~~~~~~iL~~SATp~prtl~~--~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~ 462 (681)
T PRK10917 394 RF---GVEQRL------ALREKGENPHVLVMTATPIPRTLAM--TAYGDLDVSVIDELPPGRKPITTVVIPDSRRDEVYE 462 (681)
T ss_pred hh---hHHHHH------HHHhcCCCCCEEEEeCCCCHHHHHH--HHcCCCceEEEecCCCCCCCcEEEEeCcccHHHHHH
Confidence 85 333332 2333344688999999999876542 2233333333322 3334445544444433333444
Q ss_pred HHHHHHHhcCCceEEEEecccc--------cHHHHHHHHHhC--CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q 004900 248 DLCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (724)
Q Consensus 248 ~L~~lLk~~~~~~~IIf~~sr~--------~~e~La~~L~~~--gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a 317 (724)
.+...+. .+.+++|||+.++ .++.+++.|... ++.+..+||+|++++|..++++|++|+++|||||++
T Consensus 463 ~i~~~~~--~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 540 (681)
T PRK10917 463 RIREEIA--KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTV 540 (681)
T ss_pred HHHHHHH--cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcc
Confidence 4444443 3568999999654 456778888765 578999999999999999999999999999999999
Q ss_pred cccccCCCCcceEEeeCCCC-CHHHHHHHHcccCCCCCCCeEEEEEc
Q 004900 318 FGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYG 363 (724)
Q Consensus 318 ~g~GIDip~V~~VI~~d~P~-S~~~yiQr~GRAGRdG~~g~~il~~~ 363 (724)
+++|||+|++++||+++.|. ....|.|++||+||.|..|.|++++.
T Consensus 541 ie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 541 IEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred eeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEEC
Confidence 99999999999999999997 58899999999999999999999995
No 42
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-38 Score=331.36 Aligned_cols=355 Identities=20% Similarity=0.243 Sum_probs=275.9
Q ss_pred cccccccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHHHHHHcC------CC
Q 004900 8 MQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PG 79 (724)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~lpal~~------~~ 79 (724)
-+...+...|+++.+.+++++.|.. ++|..|..+|+.+++.++.. +++|.++..|+|||.||.+.+|.+ .+
T Consensus 83 nsPlyS~ksFeeL~LkPellkgly~-M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~P 161 (477)
T KOG0332|consen 83 NSPLYSAKSFEELRLKPELLKGLYA-MKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVP 161 (477)
T ss_pred CCCccccccHHhhCCCHHHHhHHHH-hccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCC
Confidence 3446678889999999999999998 89999999999999999976 799999999999999999999865 56
Q ss_pred eEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCc
Q 004900 80 IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLL 159 (724)
Q Consensus 80 ~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l 159 (724)
.++.|+|+++|+.|..+.+...|-...+..+-...+.+ ..+...-.-+|+++||-.+.- ++.. .+.+....+
T Consensus 162 Q~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk-----~~rG~~i~eqIviGTPGtv~D--lm~k-lk~id~~ki 233 (477)
T KOG0332|consen 162 QCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSK-----AKRGNKLTEQIVIGTPGTVLD--LMLK-LKCIDLEKI 233 (477)
T ss_pred CceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcc-----cccCCcchhheeeCCCccHHH--HHHH-HHhhChhhc
Confidence 78999999999999999999987544211111100000 000011124566666654321 1111 234556668
Q ss_pred cEEEEcccccccc-CCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeec-cCCCCceEEEE
Q 004900 160 NLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEV 236 (724)
Q Consensus 160 ~lIVIDEAH~l~~-~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~-s~~r~ni~~~v 236 (724)
..+|+|||+.+.+ .| |+..-. .+....| +.+++++|||....+.......+--.++..++. .....+++...
T Consensus 234 kvfVlDEAD~Mi~tqG--~~D~S~---rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQly 308 (477)
T KOG0332|consen 234 KVFVLDEADVMIDTQG--FQDQSI---RIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLY 308 (477)
T ss_pred eEEEecchhhhhhccc--ccccch---hhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhhe
Confidence 9999999998875 34 333332 3344445 899999999999999886666654445554443 34556666555
Q ss_pred EeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 237 ~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
..+...+++++.|.++.....-++.||||.|++.+..|+..|.+.|..+..+||+|.-.+|..+.++|+.|..+|||+|+
T Consensus 309 v~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTn 388 (477)
T KOG0332|consen 309 VLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTN 388 (477)
T ss_pred eeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEec
Confidence 55666689999999987766667899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcceEEeeCCC------CCHHHHHHHHcccCCCCCCCeEEEEEcccc-HHHHHHHHHh
Q 004900 317 AFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSK 376 (724)
Q Consensus 317 a~g~GIDip~V~~VI~~d~P------~S~~~yiQr~GRAGRdG~~g~~il~~~~~D-~~~~~~i~~~ 376 (724)
++++|||++.|.+||+||+| .+.++|+||+||+||.|+.|.++-+++..+ ...+..|.+.
T Consensus 389 V~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~ 455 (477)
T KOG0332|consen 389 VCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKH 455 (477)
T ss_pred hhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHH
Confidence 99999999999999999999 489999999999999999999999887544 4555555543
No 43
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-38 Score=334.27 Aligned_cols=349 Identities=19% Similarity=0.272 Sum_probs=286.8
Q ss_pred ccccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC-----------CC
Q 004900 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PG 79 (724)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~-----------~~ 79 (724)
..+...|+.++..+.|..+++. --|.+++|+|.++++.++.|+|++.+|-||+|||.+|++|++.+ ++
T Consensus 219 ~rpvtsfeh~gfDkqLm~airk-~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gP 297 (731)
T KOG0339|consen 219 PRPVTSFEHFGFDKQLMTAIRK-SEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGP 297 (731)
T ss_pred CCCcchhhhcCchHHHHHHHhh-hhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCC
Confidence 4456778889999999998888 48999999999999999999999999999999999999999742 57
Q ss_pred eEEEEcCcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH--hh
Q 004900 80 IVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KI 153 (724)
Q Consensus 80 ~vLVlsPl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~--~~ 153 (724)
..||++||++|+.|.....++| |++.+.++++.+..+....+. . ...++++|| +++-.+. +.
T Consensus 298 i~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk---~---g~EivVaTP------gRlid~VkmKa 365 (731)
T KOG0339|consen 298 IGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK---E---GAEIVVATP------GRLIDMVKMKA 365 (731)
T ss_pred eEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh---c---CCeEEEech------HHHHHHHHhhc
Confidence 8999999999999999888775 788888888887765543322 2 244555554 5544543 33
Q ss_pred hhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEe-eccCCC--C
Q 004900 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNR--P 230 (724)
Q Consensus 154 ~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi-~~s~~r--~ 230 (724)
.+..++.++|||||++|.+.| |.+..+.|.. ...|+.|.++||||....+.......|+ +|+.+ ..+... .
T Consensus 366 tn~~rvS~LV~DEadrmfdmG--fe~qVrSI~~--hirpdrQtllFsaTf~~kIe~lard~L~--dpVrvVqg~vgean~ 439 (731)
T KOG0339|consen 366 TNLSRVSYLVLDEADRMFDMG--FEPQVRSIKQ--HIRPDRQTLLFSATFKKKIEKLARDILS--DPVRVVQGEVGEANE 439 (731)
T ss_pred ccceeeeEEEEechhhhhccc--cHHHHHHHHh--hcCCcceEEEeeccchHHHHHHHHHHhc--CCeeEEEeehhcccc
Confidence 345568999999999999999 6776665533 3447999999999999998876666553 55533 233332 3
Q ss_pred ceEEEEEeccchhhHHHHHHHHHHhc-CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCc
Q 004900 231 NLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (724)
Q Consensus 231 ni~~~v~~~~~~~~k~~~L~~lLk~~-~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~ 309 (724)
.|...|........++..|..-|... ..+++|||+.-...++.++..|+-.|+.+..+||+|.+.+|.+++.+|+.+..
T Consensus 440 dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~ 519 (731)
T KOG0339|consen 440 DITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRK 519 (731)
T ss_pred chhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCC
Confidence 35555666666677888777666553 34689999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhcc
Q 004900 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (724)
Q Consensus 310 ~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~ 378 (724)
+|||||++..+|+|+|+++.||+||+-.+++.|.||+||+||.|..|.+++|++..|......+++...
T Consensus 520 ~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe 588 (731)
T KOG0339|consen 520 PVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLE 588 (731)
T ss_pred ceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999988777777554
No 44
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=5.9e-37 Score=358.37 Aligned_cols=317 Identities=20% Similarity=0.249 Sum_probs=239.4
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHH
Q 004900 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (724)
Q Consensus 21 ~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g------~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~ 91 (724)
.....+...+...++| +|++.|.++|+.++.+ .+.++++|||+|||++|++|++. .+..++|++||++|+
T Consensus 219 ~~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA 297 (630)
T TIGR00643 219 NPSEELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILA 297 (630)
T ss_pred CCChHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHH
Confidence 3334555556566899 5999999999999876 25899999999999999988764 577999999999999
Q ss_pred HHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccc
Q 004900 92 ENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 167 (724)
Q Consensus 92 ~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEA 167 (724)
.|+++.++++ |+++..++++.....+...+..+..+. .+|+++||..+... .....+++|||||+
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~--~~IiVgT~~ll~~~---------~~~~~l~lvVIDEa 366 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQ--IHLVVGTHALIQEK---------VEFKRLALVIIDEQ 366 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCC--CCEEEecHHHHhcc---------ccccccceEEEech
Confidence 9999988874 688999999988888888888777664 78888888765421 22356899999999
Q ss_pred cccccCCCCChHHHHHHHHHHhhCC---CCCEEEEeecCChhhHHHHHHhhccCCCeEe-eccCCCCceEEEEEeccchh
Q 004900 168 HCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQNPLVL-KSSFNRPNLFYEVRYKDLLD 243 (724)
Q Consensus 168 H~l~~~G~dFrp~y~~L~~l~~~~p---~~pil~LSAT~~~~v~~di~~~l~l~~~~vi-~~s~~r~ni~~~v~~~~~~~ 243 (724)
|++ |...|.. ++...+ +.++++||||+.+..... ...+..+...+ ..+..+..+...+.......
T Consensus 367 H~f---g~~qr~~------l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~~~i~~~p~~r~~i~~~~~~~~~~~ 435 (630)
T TIGR00643 367 HRF---GVEQRKK------LREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDTSIIDELPPGRKPITTVLIKHDEKD 435 (630)
T ss_pred hhc---cHHHHHH------HHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcceeeeccCCCCCCceEEEEeCcchHH
Confidence 984 4333332 333333 678999999998876542 11221122222 12233344444443332222
Q ss_pred hHHHHHHHHHHhcCCceEEEEeccc--------ccHHHHHHHHHhC--CCceeeecCCCCHHHHHHHHHHhhcCCceEEE
Q 004900 244 DAYADLCSVLKANGDTCAIVYCLER--------TTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (724)
Q Consensus 244 ~k~~~L~~lLk~~~~~~~IIf~~sr--------~~~e~La~~L~~~--gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLV 313 (724)
..+..+.+.+. .+.+++|||+.. ..++.+++.|.+. ++.+..+||+|++++|..++++|++|+.+|||
T Consensus 436 ~~~~~i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILV 513 (630)
T TIGR00643 436 IVYEFIEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILV 513 (630)
T ss_pred HHHHHHHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEE
Confidence 23333333332 356799999876 4566778888763 78899999999999999999999999999999
Q ss_pred EccccccccCCCCcceEEeeCCCC-CHHHHHHHHcccCCCCCCCeEEEEE
Q 004900 314 ATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYY 362 (724)
Q Consensus 314 AT~a~g~GIDip~V~~VI~~d~P~-S~~~yiQr~GRAGRdG~~g~~il~~ 362 (724)
||+++++|||+|++++||+++.|. +...|.|++||+||.|..|.|++++
T Consensus 514 aT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 514 ATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred ECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 999999999999999999999997 6889999999999999999999999
No 45
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=8e-37 Score=372.33 Aligned_cols=320 Identities=21% Similarity=0.213 Sum_probs=246.9
Q ss_pred CCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CcEEEEcCCCchHHHHHHHHHH---cCCCeEEEEcCcHH
Q 004900 19 PLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIA 89 (724)
Q Consensus 19 ~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g------~dvlv~apTGsGKTl~~~lpal---~~~~~vLVlsPl~a 89 (724)
.+....++...+...|+| .+++.|.++|+.++.+ +|++++++||+|||.+|+.++. ..+..++||+||++
T Consensus 582 ~~~~~~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~e 660 (1147)
T PRK10689 582 AFKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTL 660 (1147)
T ss_pred CCCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHH
Confidence 355567788888888999 5999999999999987 8999999999999999887664 46789999999999
Q ss_pred HHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEc
Q 004900 90 LMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAID 165 (724)
Q Consensus 90 L~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVID 165 (724)
|+.|++..++.+ ++.+..+++..+......++..+..+. ++|+++||+++.. ......+++||||
T Consensus 661 LA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~--~dIVVgTp~lL~~---------~v~~~~L~lLVID 729 (1147)
T PRK10689 661 LAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGK--IDILIGTHKLLQS---------DVKWKDLGLLIVD 729 (1147)
T ss_pred HHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCC--CCEEEECHHHHhC---------CCCHhhCCEEEEe
Confidence 999999998763 466777777777777777777666554 7899999975432 1123458999999
Q ss_pred cccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC-CCceEEEEEeccchhh
Q 004900 166 EAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKDLLDD 244 (724)
Q Consensus 166 EAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~-r~ni~~~v~~~~~~~~ 244 (724)
|+|++ |.. ....+....+++++++||||+.+.+..... .++.++.++..+.. +..+...+.......
T Consensus 730 Eahrf---G~~------~~e~lk~l~~~~qvLl~SATpiprtl~l~~--~gl~d~~~I~~~p~~r~~v~~~~~~~~~~~- 797 (1147)
T PRK10689 730 EEHRF---GVR------HKERIKAMRADVDILTLTATPIPRTLNMAM--SGMRDLSIIATPPARRLAVKTFVREYDSLV- 797 (1147)
T ss_pred chhhc---chh------HHHHHHhcCCCCcEEEEcCCCCHHHHHHHH--hhCCCcEEEecCCCCCCCceEEEEecCcHH-
Confidence 99995 432 223344455689999999999998876333 35667766654332 333332222222111
Q ss_pred HHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC--CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccccc
Q 004900 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (724)
Q Consensus 245 k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~--gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GI 322 (724)
....+...+. .+++++|||++++.++.+++.|.+. +..+..+||+|++++|..++.+|.+|+++|||||+++++||
T Consensus 798 ~k~~il~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGI 875 (1147)
T PRK10689 798 VREAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 (1147)
T ss_pred HHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhccc
Confidence 1222222222 2467999999999999999999987 78899999999999999999999999999999999999999
Q ss_pred CCCCcceEEeeCCC-CCHHHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 323 DRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 323 Dip~V~~VI~~d~P-~S~~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
|+|+|++||..+.+ .++..|+|++||+||.|+.|.|++++..
T Consensus 876 DIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~~~ 918 (1147)
T PRK10689 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 (1147)
T ss_pred ccccCCEEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEeCC
Confidence 99999999954432 3566899999999999999999999854
No 46
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=358.63 Aligned_cols=346 Identities=21% Similarity=0.346 Sum_probs=276.9
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc-----------CCCeE
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIV 81 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~-----------~~~~v 81 (724)
+.+.|...++...++..+++ +||..++|+|.+||++|+.|+|+|.+|-||+|||++|++|++. .++.+
T Consensus 363 pv~sW~q~gl~~~il~tlkk-l~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~ 441 (997)
T KOG0334|consen 363 PVTSWTQCGLSSKILETLKK-LGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIA 441 (997)
T ss_pred ccchHhhCCchHHHHHHHHH-hcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceE
Confidence 45667788889999999955 8999999999999999999999999999999999999999984 26789
Q ss_pred EEEcCcHHHHHHHHHHHHH----cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH-----Hh
Q 004900 82 LVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-----KK 152 (724)
Q Consensus 82 LVlsPl~aL~~qqv~~l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L-----~~ 152 (724)
||++||++|+.|..+.++. .++.++...++....... ..+..+ ..|+++||- ++-++ .+
T Consensus 442 li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qi---aelkRg---~eIvV~tpG------RmiD~l~~n~gr 509 (997)
T KOG0334|consen 442 LILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQI---AELKRG---AEIVVCTPG------RMIDILCANSGR 509 (997)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHH---HHHhcC---CceEEeccc------hhhhhHhhcCCc
Confidence 9999999999998888766 467777766665544432 333333 456666555 33222 12
Q ss_pred hhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc---CCC
Q 004900 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNR 229 (724)
Q Consensus 153 ~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s---~~r 229 (724)
+.+..++.++|+||||+|.+.| |.|....| +...-|..|++++|||.+..+...-...+. .|+.+... .--
T Consensus 510 vtnlrR~t~lv~deaDrmfdmg--fePq~~~I--i~nlrpdrQtvlfSatfpr~m~~la~~vl~--~Pveiiv~~~svV~ 583 (997)
T KOG0334|consen 510 VTNLRRVTYLVLDEADRMFDMG--FEPQITRI--LQNLRPDRQTVLFSATFPRSMEALARKVLK--KPVEIIVGGRSVVC 583 (997)
T ss_pred cccccccceeeechhhhhheec--cCcccchH--HhhcchhhhhhhhhhhhhHHHHHHHHHhhc--CCeeEEEccceeEe
Confidence 2233446699999999999888 67765553 444457899999999999986664444444 55443322 122
Q ss_pred CceEEEEEeccchhhHHHHHHHHHHhc-CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCC
Q 004900 230 PNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (724)
Q Consensus 230 ~ni~~~v~~~~~~~~k~~~L~~lLk~~-~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~ 308 (724)
..+...+......+.++..|.++|... ...++||||.....|..+.+.|.+.|+.|..+||+.++.+|..+++.|++|.
T Consensus 584 k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~ 663 (997)
T KOG0334|consen 584 KEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV 663 (997)
T ss_pred ccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC
Confidence 344455555555678999999998763 4678999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 309 ~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
+.+||||+++++|+|++++.+|||||+|...+.|+||.||+||.|..|.|++|..+++....-.|.+..
T Consensus 664 ~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 664 VNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred ceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997766655554433
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.3e-36 Score=351.03 Aligned_cols=323 Identities=25% Similarity=0.306 Sum_probs=259.5
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc----C-------CCeEEEEcCcHH
Q 004900 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----K-------PGIVLVVSPLIA 89 (724)
Q Consensus 21 ~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~----~-------~~~vLVlsPl~a 89 (724)
.+++.+.+.++.. |.+|||.|.+||+.+.+|++++++||||+|||+++.+|++. . +-.+|+|+|+++
T Consensus 7 ~l~~~v~~~~~~~--~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkA 84 (814)
T COG1201 7 ILDPRVREWFKRK--FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKA 84 (814)
T ss_pred hcCHHHHHHHHHh--cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHH
Confidence 4567888999986 88999999999999999999999999999999999999874 2 136899999999
Q ss_pred HHHHHHHHHHH----cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccc----cChhHHHHHHhhhhcCCccE
Q 004900 90 LMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT----ATPGFMSKLKKIHSRGLLNL 161 (724)
Q Consensus 90 L~~qqv~~l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i----~T~~~l~~L~~~~~~~~l~l 161 (724)
|.+|+...|.. +|+++...++.+...++..... ...+||++|||.+ ..+.+...| ..+.+
T Consensus 85 Ln~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~------~PPdILiTTPEsL~lll~~~~~r~~l------~~vr~ 152 (814)
T COG1201 85 LNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLK------NPPHILITTPESLAILLNSPKFRELL------RDVRY 152 (814)
T ss_pred HHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccC------CCCcEEEeChhHHHHHhcCHHHHHHh------cCCcE
Confidence 99999988765 6899988898888887765432 2478999999954 333333333 34889
Q ss_pred EEEcccccccc--CCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCC-CeEeeccCCCCceEEEEEe
Q 004900 162 VAIDEAHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQN-PLVLKSSFNRPNLFYEVRY 238 (724)
Q Consensus 162 IVIDEAH~l~~--~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~-~~vi~~s~~r~ni~~~v~~ 238 (724)
|||||.|.+.. .|+. .+..|.++....++.+.++||||..+. .++.++|.-.. +..+.......+..+.+..
T Consensus 153 VIVDEiHel~~sKRG~~---Lsl~LeRL~~l~~~~qRIGLSATV~~~--~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~ 227 (814)
T COG1201 153 VIVDEIHALAESKRGVQ---LALSLERLRELAGDFQRIGLSATVGPP--EEVAKFLVGFGDPCEIVDVSAAKKLEIKVIS 227 (814)
T ss_pred EEeehhhhhhccccchh---hhhhHHHHHhhCcccEEEeehhccCCH--HHHHHHhcCCCCceEEEEcccCCcceEEEEe
Confidence 99999999854 4543 234466777777788999999999865 45677776664 4433332222233333322
Q ss_pred cc--------chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCC-CceeeecCCCCHHHHHHHHHHhhcCCc
Q 004900 239 KD--------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLNDKARSSVLDDWISSRK 309 (724)
Q Consensus 239 ~~--------~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~g-i~v~~~H~~l~~~eR~~vl~~F~~g~~ 309 (724)
.. .....+..+.++++++. .+|||+|||..+|.++..|++.+ ..+..+||.++.+.|..+.++|++|+.
T Consensus 228 p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~l 305 (814)
T COG1201 228 PVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGEL 305 (814)
T ss_pred cCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCc
Confidence 11 12346777888888765 79999999999999999999986 889999999999999999999999999
Q ss_pred eEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCC-CCCCCeEEEEEcc
Q 004900 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSKSLLYYGM 364 (724)
Q Consensus 310 ~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGR-dG~~g~~il~~~~ 364 (724)
+++|||+.++.|||+.+|+.|||++.|.++..++||+||+|+ -|..+.++++...
T Consensus 306 ravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 306 KAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred eEEEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 999999999999999999999999999999999999999995 5667888877654
No 48
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.1e-37 Score=331.90 Aligned_cols=338 Identities=22% Similarity=0.290 Sum_probs=239.8
Q ss_pred HHHHcCCCCCCHHHHHHHHHHH---------cCCcEEEEcCCCchHHHHHHHHHHcC-------CCeEEEEcCcHHHHHH
Q 004900 30 LRWHFGHAQFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSPLIALMEN 93 (724)
Q Consensus 30 L~~~fG~~~lr~~Q~eaI~ail---------~g~dvlv~apTGsGKTl~~~lpal~~-------~~~vLVlsPl~aL~~q 93 (724)
|.+ ++++.+.|+|..+++.++ .++|+.|.||||+|||+||.||+++. --++|||+|+++|+.|
T Consensus 152 l~k-~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~Q 230 (620)
T KOG0350|consen 152 LVK-MAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQ 230 (620)
T ss_pred HHH-hhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHH
Confidence 555 699999999999999985 35899999999999999999999852 2479999999999999
Q ss_pred HHHHHHHc----CCceeeecccchHH-HHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH--hhhhcCCccEEEEcc
Q 004900 94 QVIGLKEK----GIAGEFLSSTQTMQ-VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDE 166 (724)
Q Consensus 94 qv~~l~~~----gi~~~~l~s~~~~~-~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~--~~~~~~~l~lIVIDE 166 (724)
.++.|..+ |+.+..+.+..+.. +...+..+-. + ..++|++.||..+. ..+. ....+..|.++||||
T Consensus 231 V~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~-~-~~~DIlVaTPGRLV-----DHl~~~k~f~Lk~LrfLVIDE 303 (620)
T KOG0350|consen 231 VYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPP-E-CRIDILVATPGRLV-----DHLNNTKSFDLKHLRFLVIDE 303 (620)
T ss_pred HHHHHHHhccCCceEEEecccccchHHHHHHHhcCCC-c-cccceEEcCchHHH-----HhccCCCCcchhhceEEEech
Confidence 99999985 44444333332222 2222211111 1 13567666665432 1111 223345589999999
Q ss_pred cccccc-----CC--------CC-------------ChHHHHHHHHHHhh----CCCCCEEEEeecCChhhHHHHHHhhc
Q 004900 167 AHCISS-----WG--------HD-------------FRPSYRKLSSLRNY----LPDVPILALTATAAPKVQKDVMESLC 216 (724)
Q Consensus 167 AH~l~~-----~G--------~d-------------Frp~y~~L~~l~~~----~p~~pil~LSAT~~~~v~~di~~~l~ 216 (724)
||+|++ |- +. +-+.-..+..+... +|....+.+|||++..-.+ ...+.
T Consensus 304 ADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~K--l~~l~ 381 (620)
T KOG0350|consen 304 ADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSK--LKDLT 381 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHH--Hhhhh
Confidence 999986 21 00 00000111222222 2333467888888766544 44455
Q ss_pred cCCCeEeeccC------CCCc-e-EEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHH----hCCCc
Q 004900 217 LQNPLVLKSSF------NRPN-L-FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS----AGGIS 284 (724)
Q Consensus 217 l~~~~vi~~s~------~r~n-i-~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~----~~gi~ 284 (724)
+..|.++.... ..|. + ++.+.... .-+...+..++......++|+|+++...+.+++..|. .....
T Consensus 382 l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~--~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~ 459 (620)
T KOG0350|consen 382 LHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEP--KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFK 459 (620)
T ss_pred cCCCceEEeecccceeeecChhhhhceeeccc--ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccch
Confidence 55664332221 1111 1 11111111 1233455667777778899999999999999999887 23567
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 285 v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
+..|.|+++.+.|...+++|..|+++||||+|++++|||+.+|+.||+||+|.+..+|+||+||++|+|+.|.|+.+...
T Consensus 460 ~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~ 539 (620)
T KOG0350|consen 460 VSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDK 539 (620)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeecc
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhccC
Q 004900 365 DDRRRMEFILSKNQS 379 (724)
Q Consensus 365 ~D~~~~~~i~~~~~~ 379 (724)
.+.+.+..++++...
T Consensus 540 ~~~r~F~klL~~~~~ 554 (620)
T KOG0350|consen 540 HEKRLFSKLLKKTNL 554 (620)
T ss_pred ccchHHHHHHHHhcc
Confidence 999999988886543
No 49
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.9e-36 Score=357.01 Aligned_cols=324 Identities=22% Similarity=0.292 Sum_probs=236.0
Q ss_pred CCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHH
Q 004900 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (724)
Q Consensus 17 ~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~a-il~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~ 91 (724)
++++++++.+.+.|++ .||..|+|+|.++++. ++.|+|+++++|||+|||++|.+|++. .++++|+|+|+++|+
T Consensus 3 ~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 3 VDELRVDERIKRVLKE-RGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred HHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 4567788999999999 7999999999999986 789999999999999999999999864 467999999999999
Q ss_pred HHHHHHHHH---cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccc
Q 004900 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (724)
Q Consensus 92 ~qqv~~l~~---~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH 168 (724)
.|++..+.. +|+.+..+++....... . + ...+|+++|||.+..- +. ........+++|||||+|
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~--~---~----~~~~IiV~Tpe~~~~l--l~--~~~~~l~~l~lvViDE~H 148 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDSTDE--W---L----GKYDIIIATAEKFDSL--LR--HGSSWIKDVKLVVADEIH 148 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCchh--h---h----ccCCEEEEcHHHHHHH--Hh--CCchhhhcCCEEEEcCcC
Confidence 999988875 46777777665543211 1 1 1367899999865321 11 001123458999999999
Q ss_pred ccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCc-----eEEE--EEeccc
Q 004900 169 CISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN-----LFYE--VRYKDL 241 (724)
Q Consensus 169 ~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~n-----i~~~--v~~~~~ 241 (724)
.+.+++ +.+.+..+ +.....+.++++||||++.. .++..+++... +. +..+|. +.+. +...+.
T Consensus 149 ~l~~~~--rg~~le~i--l~~l~~~~qiI~lSATl~n~--~~la~wl~~~~---~~-~~~rpv~l~~~~~~~~~~~~~~~ 218 (720)
T PRK00254 149 LIGSYD--RGATLEMI--LTHMLGRAQILGLSATVGNA--EELAEWLNAEL---VV-SDWRPVKLRKGVFYQGFLFWEDG 218 (720)
T ss_pred ccCCcc--chHHHHHH--HHhcCcCCcEEEEEccCCCH--HHHHHHhCCcc---cc-CCCCCCcceeeEecCCeeeccCc
Confidence 998866 33333333 22223478999999999763 56677765421 11 111221 1110 000110
Q ss_pred -----hhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC---------------------------------CC
Q 004900 242 -----LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------------------GI 283 (724)
Q Consensus 242 -----~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~---------------------------------gi 283 (724)
.......+.+.++. +.++||||+|++.|+.++..|... ..
T Consensus 219 ~~~~~~~~~~~~~~~~i~~--~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~ 296 (720)
T PRK00254 219 KIERFPNSWESLVYDAVKK--GKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRG 296 (720)
T ss_pred chhcchHHHHHHHHHHHHh--CCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhh
Confidence 01122334444543 468999999999999888776421 12
Q ss_pred ceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEe-------eCCCC-CHHHHHHHHcccCCCC--
Q 004900 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------FNIPK-SMEAFYQESGRAGRDQ-- 353 (724)
Q Consensus 284 ~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~-------~d~P~-S~~~yiQr~GRAGRdG-- 353 (724)
.+.+|||+|++++|..+++.|++|.++|||||+++++|||+|.+++||+ ++.|. +..+|.||+|||||.|
T Consensus 297 gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d 376 (720)
T PRK00254 297 GVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYD 376 (720)
T ss_pred CEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcC
Confidence 4789999999999999999999999999999999999999999999994 55544 6789999999999976
Q ss_pred CCCeEEEEEcccc
Q 004900 354 LPSKSLLYYGMDD 366 (724)
Q Consensus 354 ~~g~~il~~~~~D 366 (724)
..|.++++....+
T Consensus 377 ~~G~~ii~~~~~~ 389 (720)
T PRK00254 377 EVGEAIIVATTEE 389 (720)
T ss_pred CCceEEEEecCcc
Confidence 5688999987655
No 50
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-36 Score=333.24 Aligned_cols=339 Identities=19% Similarity=0.262 Sum_probs=258.2
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC-----------CCeEEEEcCcHH
Q 004900 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVLVVSPLIA 89 (724)
Q Consensus 21 ~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~-----------~~~vLVlsPl~a 89 (724)
.-+..++..+.. .||..++|.|.++|+.++.++|+++++|||+|||++|.+|++.+ +-.++|++|+++
T Consensus 142 ~~~~~ll~nl~~-~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptre 220 (593)
T KOG0344|consen 142 SMNKRLLENLQE-LGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRE 220 (593)
T ss_pred hhcHHHHHhHhh-CCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHH
Confidence 335566777776 59999999999999999999999999999999999999999852 347999999999
Q ss_pred HHHHHHHHHHHcCCc------eeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhh----hhcCCc
Q 004900 90 LMENQVIGLKEKGIA------GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI----HSRGLL 159 (724)
Q Consensus 90 L~~qqv~~l~~~gi~------~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~----~~~~~l 159 (724)
|+.|.++++..+.+. +..+........+..... ...+++++.||- .+-.+... .....+
T Consensus 221 La~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~-----~~k~dili~TP~------ri~~~~~~~~~~idl~~V 289 (593)
T KOG0344|consen 221 LAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLS-----DEKYDILISTPM------RIVGLLGLGKLNIDLSKV 289 (593)
T ss_pred HHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhH-----HHHHHHHhcCHH------HHHHHhcCCCccchhhee
Confidence 999999999887533 111211111111111111 112455555554 33333332 244568
Q ss_pred cEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC---CCceEEEE
Q 004900 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEV 236 (724)
Q Consensus 160 ~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~---r~ni~~~v 236 (724)
.++|+||||.+.+. ..|+.....+-..+.. |++.+-+||||.+..+.. +..+.+.++..+..+.. ...+....
T Consensus 290 ~~lV~dEaD~lfe~-~~f~~Qla~I~sac~s-~~i~~a~FSat~~~~VEE--~~~~i~~~~~~vivg~~~sa~~~V~Qel 365 (593)
T KOG0344|consen 290 EWLVVDEADLLFEP-EFFVEQLADIYSACQS-PDIRVALFSATISVYVEE--WAELIKSDLKRVIVGLRNSANETVDQEL 365 (593)
T ss_pred eeEeechHHhhhCh-hhHHHHHHHHHHHhcC-cchhhhhhhccccHHHHH--HHHHhhccceeEEEecchhHhhhhhhhh
Confidence 89999999999885 1254444444333332 788889999999988766 33334445544433322 22334444
Q ss_pred EeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHH-HhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEc
Q 004900 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYL-SAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (724)
Q Consensus 237 ~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L-~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT 315 (724)
........++-.+.+++...-..+++||+.+.+.|.+|...| .-.++.+..+||..++.+|...+++|+.|+++|||||
T Consensus 366 vF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT 445 (593)
T KOG0344|consen 366 VFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT 445 (593)
T ss_pred eeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeEEEeh
Confidence 455555678888888988877789999999999999999999 5568999999999999999999999999999999999
Q ss_pred cccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHH
Q 004900 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 316 ~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~ 375 (724)
+++++|||+.+|+.||+||+|.+..+|+||+||+||+|+.|.+++||+..|...++-+..
T Consensus 446 dll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae 505 (593)
T KOG0344|consen 446 DLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAE 505 (593)
T ss_pred hhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHH
Confidence 999999999999999999999999999999999999999999999999999887765543
No 51
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=6.6e-37 Score=334.75 Aligned_cols=335 Identities=19% Similarity=0.257 Sum_probs=270.1
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcC
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsP 86 (724)
.+..|+.+.+..+++..|+.. ||..++++|..||+.++.+.|+||++..|+|||++|.+.++.. ....+||+|
T Consensus 23 ~~~~fe~l~l~r~vl~glrrn-~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~P 101 (980)
T KOG4284|consen 23 CTPGFEQLALWREVLLGLRRN-AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTP 101 (980)
T ss_pred CCCCHHHHHHHHHHHHHHHhh-cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEec
Confidence 356677788889999999984 9999999999999999999999999999999999998877752 567899999
Q ss_pred cHHHHHHHHHHHHHcCC-----ceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH--HhhhhcCCc
Q 004900 87 LIALMENQVIGLKEKGI-----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL--KKIHSRGLL 159 (724)
Q Consensus 87 l~aL~~qqv~~l~~~gi-----~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L--~~~~~~~~l 159 (724)
||+++.|..+.+...++ ++.++.++........-. . ..+|+++|| |++..| ....+.+.+
T Consensus 102 TREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl---k----~~rIvIGtP------GRi~qL~el~~~n~s~v 168 (980)
T KOG4284|consen 102 TREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL---K----QTRIVIGTP------GRIAQLVELGAMNMSHV 168 (980)
T ss_pred chhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh---h----hceEEecCc------hHHHHHHHhcCCCccce
Confidence 99999999988888644 454454444433222111 1 255655555 555555 334456679
Q ss_pred cEEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceE----E
Q 004900 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF----Y 234 (724)
Q Consensus 160 ~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~----~ 234 (724)
+++|+||||.+.+-+. |+.+ +..+...+| ..|++++|||-+......+.+. |++|.++..+.+.+.++ |
T Consensus 169 rlfVLDEADkL~~t~s-fq~~---In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~--mrdp~lVr~n~~d~~L~GikQy 242 (980)
T KOG4284|consen 169 RLFVLDEADKLMDTES-FQDD---INIIINSLPQIRQVAAFSATYPRNLDNLLSKF--MRDPALVRFNADDVQLFGIKQY 242 (980)
T ss_pred eEEEeccHHhhhchhh-HHHH---HHHHHHhcchhheeeEEeccCchhHHHHHHHH--hcccceeecccCCceeechhhe
Confidence 9999999999998553 5544 455566667 6799999999999887766664 56888877776666542 2
Q ss_pred EEEec-c-----chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCC
Q 004900 235 EVRYK-D-----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (724)
Q Consensus 235 ~v~~~-~-----~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~ 308 (724)
.+... . ....+++.|.++++.-+-..+||||+....|+-++.+|...|+.|.++.|.|++.+|..+++.++.-.
T Consensus 243 v~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~ 322 (980)
T KOG4284|consen 243 VVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFR 322 (980)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhce
Confidence 22211 1 12347778888888888888999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 309 ~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
++|||+|+..++|||-++|++||+.|+|.+-++|+||+|||||.|-.|.+++|+.....
T Consensus 323 ~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 323 VRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDERE 381 (980)
T ss_pred EEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccceeEEEeccchh
Confidence 99999999999999999999999999999999999999999999999999999875543
No 52
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=5.4e-35 Score=345.33 Aligned_cols=337 Identities=21% Similarity=0.225 Sum_probs=234.7
Q ss_pred cCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHH
Q 004900 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALME 92 (724)
Q Consensus 16 ~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~ 92 (724)
.++++++++++.+.+.. .|+. ++++|.++++.+.+|+++++++|||+|||+++.++++. .++++|+|+|+++|+.
T Consensus 2 ~~~~~~l~~~~~~~~~~-~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 2 KISDLGYDDEFLNLFTG-NDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAM 79 (674)
T ss_pred cHhhcCCCHHHHHHHhh-CCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHH
Confidence 35567888999999987 5887 99999999999999999999999999999999888754 4788999999999999
Q ss_pred HHHHHHHH---cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccc
Q 004900 93 NQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (724)
Q Consensus 93 qqv~~l~~---~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~ 169 (724)
|+++.+++ .|+.+....+....... . + ...+++++|||.+..-... .......+++|||||||+
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~--~---~----~~~dIiv~Tpek~~~l~~~----~~~~l~~v~lvViDEaH~ 146 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPD--F---I----KRYDVVILTSEKADSLIHH----DPYIINDVGLIVADEIHI 146 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChh--h---h----ccCCEEEECHHHHHHHHhC----ChhHHhhcCEEEEecchh
Confidence 99998876 36666555544332111 1 1 1367888888864321100 011234589999999999
Q ss_pred cccCCCCChHHHHHH-HHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEe-----ccchh
Q 004900 170 ISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY-----KDLLD 243 (724)
Q Consensus 170 l~~~G~dFrp~y~~L-~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~-----~~~~~ 243 (724)
+.+.+ +-+.+..+ ..++...++.++++||||+++. .++.++++... +...+....+...+.. .+...
T Consensus 147 l~d~~--rg~~le~ll~~~~~~~~~~riI~lSATl~n~--~~la~wl~~~~---~~~~~r~vpl~~~i~~~~~~~~~~~~ 219 (674)
T PRK01172 147 IGDED--RGPTLETVLSSARYVNPDARILALSATVSNA--NELAQWLNASL---IKSNFRPVPLKLGILYRKRLILDGYE 219 (674)
T ss_pred ccCCC--ccHHHHHHHHHHHhcCcCCcEEEEeCccCCH--HHHHHHhCCCc---cCCCCCCCCeEEEEEecCeeeecccc
Confidence 98754 34445443 3334444688999999999763 56677765321 1111111111111110 00000
Q ss_pred hHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCC-------------------------CceeeecCCCCHHH
Q 004900 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG-------------------------ISCAAYHAGLNDKA 296 (724)
Q Consensus 244 ~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~g-------------------------i~v~~~H~~l~~~e 296 (724)
.....+..++.. ..++++||||++++.|+.++..|.... ..+..+||+|++++
T Consensus 220 ~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~e 299 (674)
T PRK01172 220 RSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQ 299 (674)
T ss_pred cccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHH
Confidence 000112222222 235689999999999999999886531 23678999999999
Q ss_pred HHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCC---------CCCHHHHHHHHcccCCCCC--CCeEEEEEccc
Q 004900 297 RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---------PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD 365 (724)
Q Consensus 297 R~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~---------P~S~~~yiQr~GRAGRdG~--~g~~il~~~~~ 365 (724)
|..+++.|++|.++|||||+++++|||+|+.++|| .+. |-+..+|.||+|||||.|. .|.++++....
T Consensus 300 R~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~ 378 (674)
T PRK01172 300 RRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASP 378 (674)
T ss_pred HHHHHHHHHcCCCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCc
Confidence 99999999999999999999999999999876555 332 5689999999999999995 56677775543
Q ss_pred -cHHHHHHHHH
Q 004900 366 -DRRRMEFILS 375 (724)
Q Consensus 366 -D~~~~~~i~~ 375 (724)
+...++.++.
T Consensus 379 ~~~~~~~~~l~ 389 (674)
T PRK01172 379 ASYDAAKKYLS 389 (674)
T ss_pred ccHHHHHHHHc
Confidence 3555655553
No 53
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.6e-36 Score=312.91 Aligned_cols=342 Identities=20% Similarity=0.322 Sum_probs=267.9
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCc
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl 87 (724)
...|.++.+.++|++.+.. +||+.|..+|+.||..+.+|.|+++.+++|+|||.+|.+++++. ...+|++.|+
T Consensus 25 vdsfddm~L~e~LLrgiy~-yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPt 103 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYA-YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPT 103 (397)
T ss_pred hhhhhhcCCCHHHHhHHHh-hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcch
Confidence 5689999999999999998 69999999999999999999999999999999999999999875 4568999999
Q ss_pred HHHHHHHHHHHHHcCCc----eeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh--hhhcCCccE
Q 004900 88 IALMENQVIGLKEKGIA----GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (724)
Q Consensus 88 ~aL~~qqv~~l~~~gi~----~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~--~~~~~~l~l 161 (724)
++|+.|.......+|-. +....++......... +... ...|+ +.||++...+.+ ......+.+
T Consensus 104 reLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~---i~~~--~~hiv------vGTpgrV~dml~~~~l~~~~iKm 172 (397)
T KOG0327|consen 104 RELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQA---LLKD--KPHIV------VGTPGRVFDMLNRGSLSTDGIKM 172 (397)
T ss_pred HHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhh---hhcc--Cceee------cCCchhHHHhhccccccccceeE
Confidence 99999988777776532 2222222222211111 1111 12344 445555444432 233455899
Q ss_pred EEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceE---EEEEe
Q 004900 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF---YEVRY 238 (724)
Q Consensus 162 IVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~---~~v~~ 238 (724)
+|+|||+.++..| |+..+..+ +....++++++++|||.++.+..--.+ .+.+|+.+....+.-.+. .....
T Consensus 173 fvlDEaDEmLs~g--fkdqI~~i--f~~lp~~vQv~l~SAT~p~~vl~vt~~--f~~~pv~i~vkk~~ltl~gikq~~i~ 246 (397)
T KOG0327|consen 173 FVLDEADEMLSRG--FKDQIYDI--FQELPSDVQVVLLSATMPSDVLEVTKK--FMREPVRILVKKDELTLEGIKQFYIN 246 (397)
T ss_pred EeecchHhhhccc--hHHHHHHH--HHHcCcchhheeecccCcHHHHHHHHH--hccCceEEEecchhhhhhheeeeeee
Confidence 9999999999977 77766655 333344899999999999998763333 356776655443322221 11111
Q ss_pred ccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc
Q 004900 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (724)
Q Consensus 239 ~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~ 318 (724)
.. .++++..|.++.+ .-...+|||||++.+..+...|...|+.+.++|++|.+.+|..+++.|++|+.+|||.|+.+
T Consensus 247 v~-k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~ 323 (397)
T KOG0327|consen 247 VE-KEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLL 323 (397)
T ss_pred cc-ccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeecccc
Confidence 11 1337778888877 34568999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHh
Q 004900 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 319 g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
++|+|+.++..||+|++|...++|+||+||+||.|.+|.++.++...|...++.+.+.
T Consensus 324 argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~ 381 (397)
T KOG0327|consen 324 ARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKF 381 (397)
T ss_pred ccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhHHHh
Confidence 9999999999999999999999999999999999999999999999999888877754
No 54
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.4e-34 Score=351.13 Aligned_cols=291 Identities=23% Similarity=0.269 Sum_probs=209.0
Q ss_pred EEcCCCchHHHHHHHHHHcC----------------CCeEEEEcCcHHHHHHHHHHHHH----------------cCCce
Q 004900 58 CLMPTGGGKSMCYQIPALAK----------------PGIVLVVSPLIALMENQVIGLKE----------------KGIAG 105 (724)
Q Consensus 58 v~apTGsGKTl~~~lpal~~----------------~~~vLVlsPl~aL~~qqv~~l~~----------------~gi~~ 105 (724)
|++|||||||+||.+|++.+ +..+|||+|+++|+.|+.+.|+. .++.+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999999998731 35799999999999999998763 35677
Q ss_pred eeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc--CCCCChHHHHH
Q 004900 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRK 183 (724)
Q Consensus 106 ~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~--~G~dFrp~y~~ 183 (724)
...+++.....+..... ...+|+++|||.+..- +.. ........+++|||||+|.+.. +|..+...+.+
T Consensus 81 ~vrtGDt~~~eR~rll~------~ppdILVTTPEsL~~L--Lts-k~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeR 151 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTR------NPPDILITTPESLYLM--LTS-RARETLRGVETVIIDEVHAVAGSKRGAHLALSLER 151 (1490)
T ss_pred EEEECCCCHHHHHHHhc------CCCCEEEecHHHHHHH--Hhh-hhhhhhccCCEEEEecHHHhcccccccHHHHHHHH
Confidence 77777777766654332 1368999999976421 000 0112345699999999999975 56665555555
Q ss_pred HHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccC-CCC-ceEEEEEeccch------------------h
Q 004900 184 LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-NRP-NLFYEVRYKDLL------------------D 243 (724)
Q Consensus 184 L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~-~r~-ni~~~v~~~~~~------------------~ 243 (724)
|..+.. .+.|+|+||||..+. .++.++|+...+..+.... .++ .+.+.+...+.. .
T Consensus 152 L~~l~~--~~~QrIgLSATI~n~--eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~ 227 (1490)
T PRK09751 152 LDALLH--TSAQRIGLSATVRSA--SDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREG 227 (1490)
T ss_pred HHHhCC--CCCeEEEEEeeCCCH--HHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhh
Confidence 544321 368999999999874 5677888765555443322 222 222222111100 0
Q ss_pred ----hHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCC---------------------------------Ccee
Q 004900 244 ----DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---------------------------------ISCA 286 (724)
Q Consensus 244 ----~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~g---------------------------------i~v~ 286 (724)
.....+...+. .+.++||||||++.|+.++..|++.. ..+.
T Consensus 228 ~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~ 305 (1490)
T PRK09751 228 SIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIAR 305 (1490)
T ss_pred hhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeee
Confidence 00112222222 34689999999999999999997631 1256
Q ss_pred eecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCC-CCCCeEEEEEc
Q 004900 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD-QLPSKSLLYYG 363 (724)
Q Consensus 287 ~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRd-G~~g~~il~~~ 363 (724)
.|||+|+.++|..+++.|++|++++||||+++++|||+++|++||+++.|.++.+|+||+||+||. |..+.++++..
T Consensus 306 ~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~ 383 (1490)
T PRK09751 306 SHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR 383 (1490)
T ss_pred eccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC
Confidence 899999999999999999999999999999999999999999999999999999999999999996 44556665443
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=1.3e-33 Score=344.85 Aligned_cols=306 Identities=20% Similarity=0.254 Sum_probs=220.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHH---cCCCeEEEEcCcHHHHHHHHHHHHH
Q 004900 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal---~~~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
+++.+.+++.+|+ .|+++|..+++.++.|+|++++||||+|||.+++++++ ..+..+|||+||++|+.|+++.++.
T Consensus 67 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~ 145 (1176)
T PRK09401 67 KEFEKFFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEK 145 (1176)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH
Confidence 4556677788898 69999999999999999999999999999975444333 2467899999999999999999998
Q ss_pred cCC----ceeeecccc--hHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCC
Q 004900 101 KGI----AGEFLSSTQ--TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (724)
Q Consensus 101 ~gi----~~~~l~s~~--~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G 174 (724)
++. ....+.++. ....+......+..+. .+|+++||+.+. ..........+++|||||||++++|+
T Consensus 146 l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~--~~IlV~Tp~rL~------~~~~~l~~~~~~~lVvDEaD~~L~~~ 217 (1176)
T PRK09401 146 FGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGD--FDILVTTSQFLS------KNFDELPKKKFDFVFVDDVDAVLKSS 217 (1176)
T ss_pred HhhhcCceEEEEEccCCcchhHHHHHHHHHhcCC--CCEEEECHHHHH------HHHHhccccccCEEEEEChHHhhhcc
Confidence 754 333333322 2333444444444443 678888776543 22223344559999999999999876
Q ss_pred CC---------Ch------------------HHHHHHHHHHhhCC-----CCCEEEEeecCChhhHH-HHHH-hhccCCC
Q 004900 175 HD---------FR------------------PSYRKLSSLRNYLP-----DVPILALTATAAPKVQK-DVME-SLCLQNP 220 (724)
Q Consensus 175 ~d---------Fr------------------p~y~~L~~l~~~~p-----~~pil~LSAT~~~~v~~-di~~-~l~l~~~ 220 (724)
++ |. +.|..+..+...+. +.+++++|||+++.... .+.. .+++
T Consensus 218 k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~--- 294 (1176)
T PRK09401 218 KNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGF--- 294 (1176)
T ss_pred cchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceE---
Confidence 43 42 33444444444332 57899999999986332 2222 1111
Q ss_pred eEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEeccccc---HHHHHHHHHhCCCceeeecCCCCHHHH
Q 004900 221 LVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTT---CDELSAYLSAGGISCAAYHAGLNDKAR 297 (724)
Q Consensus 221 ~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~---~e~La~~L~~~gi~v~~~H~~l~~~eR 297 (724)
.+-.......|+...+.... ++...|..+++..+ ..+||||++++. ++.+++.|...|+++..+||+| +
T Consensus 295 ~v~~~~~~~rnI~~~yi~~~---~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l---~- 366 (1176)
T PRK09401 295 EVGSPVFYLRNIVDSYIVDE---DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF---E- 366 (1176)
T ss_pred EecCcccccCCceEEEEEcc---cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH---H-
Confidence 11111222345543333322 45666777777654 479999999888 9999999999999999999999 2
Q ss_pred HHHHHHhhcCCceEEEE----ccccccccCCCC-cceEEeeCCCC------CHHHHHHHHcccC
Q 004900 298 SSVLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK------SMEAFYQESGRAG 350 (724)
Q Consensus 298 ~~vl~~F~~g~~~VLVA----T~a~g~GIDip~-V~~VI~~d~P~------S~~~yiQr~GRAG 350 (724)
..+++|++|+++|||| |++++||||+|+ |++|||||+|+ ..+.|.|++||+-
T Consensus 367 -~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 367 -RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred -HHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 2359999999999999 689999999999 89999999998 6788999999984
No 56
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=7.9e-34 Score=311.00 Aligned_cols=302 Identities=17% Similarity=0.107 Sum_probs=193.7
Q ss_pred cEEEEcCCCchHHHHHHHHHHc-----CCCeEEEEcCcHHHHHHHHHHHHHc-CCceeeecccchHHHH---------HH
Q 004900 55 DCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEK-GIAGEFLSSTQTMQVK---------TK 119 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpal~-----~~~~vLVlsPl~aL~~qqv~~l~~~-gi~~~~l~s~~~~~~~---------~~ 119 (724)
|+++.+|||+|||++|++|++. ...++++++|+++|+.|+.+.+... |.....+++....... ..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 6899999999999999999883 4578999999999999999999985 6555545543321110 01
Q ss_pred HHhhhhcC---CCCccEEEeCcccccChhHH---HHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCC
Q 004900 120 IYEDLDSG---KPSLRLLYVTPELTATPGFM---SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPD 193 (724)
Q Consensus 120 i~~~l~~~---~~~~~il~~TPE~i~T~~~l---~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~ 193 (724)
........ .....++++||+.+....+. ........ -..++|||||||++.+++..+ +..+..... ..+
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~-~~~~~iViDE~h~~~~~~~~~---l~~~l~~l~-~~~ 155 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLAS-IANSLLIFDEVHFYDEYTLAL---ILAVLEVLK-DND 155 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHH-hcCCEEEEeCCCCCCHHHHHH---HHHHHHHHH-HcC
Confidence 11111010 01245667777654322111 00011111 114789999999999875332 333222222 247
Q ss_pred CCEEEEeecCChhhHHHHHHhhccC-CCeEeeccCCCCceEEEEE-eccchhhHHHHHHHHHHh-cCCceEEEEeccccc
Q 004900 194 VPILALTATAAPKVQKDVMESLCLQ-NPLVLKSSFNRPNLFYEVR-YKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTT 270 (724)
Q Consensus 194 ~pil~LSAT~~~~v~~di~~~l~l~-~~~vi~~s~~r~ni~~~v~-~~~~~~~k~~~L~~lLk~-~~~~~~IIf~~sr~~ 270 (724)
.|+++||||++..+.. +....... .+..+.....+....+.+. .......+...+..+++. ..+.++||||+|++.
T Consensus 156 ~~~i~~SATlp~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~ 234 (358)
T TIGR01587 156 VPILLMSATLPKFLKE-YAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDR 234 (358)
T ss_pred CCEEEEecCchHHHHH-HHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHH
Confidence 8999999999865443 33222211 1111111100000111111 111111223344444443 245789999999999
Q ss_pred HHHHHHHHHhCCC--ceeeecCCCCHHHHHH----HHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHH
Q 004900 271 CDELSAYLSAGGI--SCAAYHAGLNDKARSS----VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQ 344 (724)
Q Consensus 271 ~e~La~~L~~~gi--~v~~~H~~l~~~eR~~----vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQ 344 (724)
|+.++..|.+.+. .+..|||++++.+|.. +++.|.+|+.+|||||+++++|||++ +++||++..| ++.|+|
T Consensus 235 ~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iq 311 (358)
T TIGR01587 235 AQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQ 311 (358)
T ss_pred HHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHH
Confidence 9999999988765 4899999999999976 48899999999999999999999995 8899988766 789999
Q ss_pred HHcccCCCCCCC----eEEEEEccc
Q 004900 345 ESGRAGRDQLPS----KSLLYYGMD 365 (724)
Q Consensus 345 r~GRAGRdG~~g----~~il~~~~~ 365 (724)
|+||+||.|+.. ..++|+...
T Consensus 312 r~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 312 RLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HhccccCCCCCCCCCCeEEEEeecC
Confidence 999999998643 456665543
No 57
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-34 Score=303.44 Aligned_cols=342 Identities=18% Similarity=0.232 Sum_probs=270.1
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC-------CCeEEEEcC
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-------PGIVLVVSP 86 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~-------~~~vLVlsP 86 (724)
.-.|..+++...+.+++.+. ||..++|+|++.|+.+++|+|++..+-||+|||.||++|++++ +-++++++|
T Consensus 20 ~g~fqsmgL~~~v~raI~kk-g~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilsp 98 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKK-GFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSP 98 (529)
T ss_pred CCCccccCCCHHHHHHHHHh-hcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccC
Confidence 45688899999999999985 9999999999999999999999999999999999999999863 358999999
Q ss_pred cHHHHHHHHHHHHHcCC----ceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEE
Q 004900 87 LIALMENQVIGLKEKGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (724)
Q Consensus 87 l~aL~~qqv~~l~~~gi----~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lI 162 (724)
+++|+.|....++.+|- +...+.++....+ .+..+.. +.+++++||-.+...+. .-...+..+.+|
T Consensus 99 treLa~qtlkvvkdlgrgt~lr~s~~~ggD~~ee---qf~~l~~---npDii~ATpgr~~h~~v----em~l~l~sveyV 168 (529)
T KOG0337|consen 99 TRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEE---QFILLNE---NPDIIIATPGRLLHLGV----EMTLTLSSVEYV 168 (529)
T ss_pred cHHHHHHHHHHHHHhccccchhhhhhcccchHHH---HHHHhcc---CCCEEEecCceeeeeeh----heeccccceeee
Confidence 99999999999998754 2332333322222 2222221 24566666654433221 111334558899
Q ss_pred EEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC---CCceEEEEEe
Q 004900 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRY 238 (724)
Q Consensus 163 VIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~---r~ni~~~v~~ 238 (724)
|+|||+.+.++|+. .++.++....| +.+.++||||++..... ....|+.+|..++...+ .+++.....
T Consensus 169 VfdEadrlfemgfq-----eql~e~l~rl~~~~QTllfSatlp~~lv~--fakaGl~~p~lVRldvetkise~lk~~f~- 240 (529)
T KOG0337|consen 169 VFDEADRLFEMGFQ-----EQLHEILSRLPESRQTLLFSATLPRDLVD--FAKAGLVPPVLVRLDVETKISELLKVRFF- 240 (529)
T ss_pred eehhhhHHHhhhhH-----HHHHHHHHhCCCcceEEEEeccCchhhHH--HHHccCCCCceEEeehhhhcchhhhhhee-
Confidence 99999999999854 55666676666 67999999999988766 55568888887763322 111111111
Q ss_pred ccchhhHHHHHHHHHHhcC-CceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q 004900 239 KDLLDDAYADLCSVLKANG-DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (724)
Q Consensus 239 ~~~~~~k~~~L~~lLk~~~-~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a 317 (724)
....+++...|..++.... +.++||||.|..+++.+...|+..|+.+..+++.|++.-|.....+|..++..++|.|++
T Consensus 241 ~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdv 320 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDV 320 (529)
T ss_pred eeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehh
Confidence 1122567777887776643 457999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHH
Q 004900 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (724)
Q Consensus 318 ~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~ 374 (724)
+++|+|+|-.+.||+||+|.+..-|+||+||+.|.|..|.++.++.+.|...+-.+.
T Consensus 321 aaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~ 377 (529)
T KOG0337|consen 321 AARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQ 377 (529)
T ss_pred hhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhh
Confidence 999999999999999999999999999999999999999999999988876654443
No 58
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=4.2e-33 Score=325.41 Aligned_cols=317 Identities=16% Similarity=0.128 Sum_probs=215.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcCC-cEEEEcCCCchHHHHHHHHHHcC-----CC-eEEEEcCcHHHHHHHHHH
Q 004900 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMCYQIPALAK-----PG-IVLVVSPLIALMENQVIG 97 (724)
Q Consensus 25 ~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~-dvlv~apTGsGKTl~~~lpal~~-----~~-~vLVlsPl~aL~~qqv~~ 97 (724)
+..+.+++..||+ |+|+|.++|+.++.|+ ++++.+|||+|||.+|.++.+.. .. ..|+++|+++|+.|..+.
T Consensus 3 ~f~~ff~~~~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~ 81 (844)
T TIGR02621 3 KFDEWYQGLHGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEE 81 (844)
T ss_pred hHHHHHHHHhCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHH
Confidence 4566777778998 9999999999999998 57778999999999665444321 23 444577999999999998
Q ss_pred HHHcC---------------------------CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHH-
Q 004900 98 LKEKG---------------------------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK- 149 (724)
Q Consensus 98 l~~~g---------------------------i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~- 149 (724)
+.+++ +.+..+.++...... +..+. ....|+++|++++........
T Consensus 82 ~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q---~~~l~---~~p~IIVgT~D~i~sr~L~~gY 155 (844)
T TIGR02621 82 AEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDE---WMLDP---HRPAVIVGTVDMIGSRLLFSGY 155 (844)
T ss_pred HHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHH---HHhcC---CCCcEEEECHHHHcCCcccccc
Confidence 87754 334444555443322 22222 236899999887765332100
Q ss_pred -----H--HhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCC---CCCEEEEeecCChhhHHHHHHhhccCC
Q 004900 150 -----L--KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DVPILALTATAAPKVQKDVMESLCLQN 219 (724)
Q Consensus 150 -----L--~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p---~~pil~LSAT~~~~v~~di~~~l~l~~ 219 (724)
+ ......+.+.+||||||| ++.| |......|.......+ +.++++||||++..+...... + +.+
T Consensus 156 g~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~g--F~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~-~-~~~ 229 (844)
T TIGR02621 156 GCGFKSRPLHAGFLGQDALIVHDEAH--LEPA--FQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTL-L-SAE 229 (844)
T ss_pred ccccccccchhhhhccceEEEEehhh--hccc--cHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHH-H-ccC
Confidence 0 011124568999999999 4445 7777666654321122 268999999998876543222 2 223
Q ss_pred CeEeecc---CCCCceEEEEEeccchhhHH----HHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCC
Q 004900 220 PLVLKSS---FNRPNLFYEVRYKDLLDDAY----ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (724)
Q Consensus 220 ~~vi~~s---~~r~ni~~~v~~~~~~~~k~----~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l 292 (724)
+..+... ....++...+ ... ...++ ..+..++. ..+.++||||||++.|+.+++.|.+.++ ..+||+|
T Consensus 230 p~~i~V~~~~l~a~ki~q~v-~v~-~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m 304 (844)
T TIGR02621 230 DYKHPVLKKRLAAKKIVKLV-PPS-DEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTL 304 (844)
T ss_pred CceeecccccccccceEEEE-ecC-hHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCC
Confidence 3222211 1111222211 111 12222 22333333 3456899999999999999999998887 8999999
Q ss_pred CHHHHH-----HHHHHhhc----CC-------ceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCC
Q 004900 293 NDKARS-----SVLDDWIS----SR-------KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPS 356 (724)
Q Consensus 293 ~~~eR~-----~vl~~F~~----g~-------~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g 356 (724)
++.+|. .++++|++ |. ..|||||+++++|||++. ++||++..| ++.|+||+||+||.|..+
T Consensus 305 ~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~ 381 (844)
T TIGR02621 305 RGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQ 381 (844)
T ss_pred CHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCC
Confidence 999999 78999987 44 689999999999999986 888887766 799999999999999854
Q ss_pred eE-EEEE
Q 004900 357 KS-LLYY 362 (724)
Q Consensus 357 ~~-il~~ 362 (724)
.+ +.++
T Consensus 382 ~~~i~vv 388 (844)
T TIGR02621 382 ACQIAVV 388 (844)
T ss_pred CceEEEE
Confidence 33 4444
No 59
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=9.6e-33 Score=302.39 Aligned_cols=299 Identities=17% Similarity=0.189 Sum_probs=200.5
Q ss_pred HHHHHHHHHHcCCc--EEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHc--------CCceeeeccc
Q 004900 42 KQLDAIQAVLSGRD--CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK--------GIAGEFLSST 111 (724)
Q Consensus 42 ~Q~eaI~ail~g~d--vlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~--------gi~~~~l~s~ 111 (724)
+|.++++++.++.+ +++.+|||+|||+||++|++.....+++++|+++|++||.+.++.+ ++.+..+.+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~ 80 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKA 80 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCC
Confidence 59999999998874 7889999999999999999988889999999999999999998874 2222223332
Q ss_pred chHHHHHHHH---hhhhcC------------CCCccEEEeCcccccChhHHHHHHh----hhhcCCccEEEEcccccccc
Q 004900 112 QTMQVKTKIY---EDLDSG------------KPSLRLLYVTPELTATPGFMSKLKK----IHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 112 ~~~~~~~~i~---~~l~~~------------~~~~~il~~TPE~i~T~~~l~~L~~----~~~~~~l~lIVIDEAH~l~~ 172 (724)
. ........ .....+ .....+++++|+++..-.+.....+ ......+++|||||+|.+..
T Consensus 81 ~-~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~ 159 (357)
T TIGR03158 81 T-LKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDA 159 (357)
T ss_pred c-hHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCc
Confidence 1 11111111 001111 1123455666665532100000000 00124689999999999998
Q ss_pred CCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccC------------C------C---C
Q 004900 173 WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF------------N------R---P 230 (724)
Q Consensus 173 ~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~------------~------r---~ 230 (724)
|+.++...+..+..+.... ...+++++|||+++.+...+...+.+..+.....+. . | |
T Consensus 160 ~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (357)
T TIGR03158 160 KQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLP 239 (357)
T ss_pred ccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceecc
Confidence 8877666554443333322 257999999999998887776653333443332222 0 1 3
Q ss_pred ceEEEEEeccc-hhhHHHHHH----HHHHhcCCceEEEEecccccHHHHHHHHHhCC--CceeeecCCCCHHHHHHHHHH
Q 004900 231 NLFYEVRYKDL-LDDAYADLC----SVLKANGDTCAIVYCLERTTCDELSAYLSAGG--ISCAAYHAGLNDKARSSVLDD 303 (724)
Q Consensus 231 ni~~~v~~~~~-~~~k~~~L~----~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~g--i~v~~~H~~l~~~eR~~vl~~ 303 (724)
++.+.+..... ....+..+. +.++...+.++||||+|++.++.++..|++.| +.+..+||.+++.+|..+
T Consensus 240 ~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~--- 316 (357)
T TIGR03158 240 PVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA--- 316 (357)
T ss_pred ceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh---
Confidence 45544443221 112222222 23333456789999999999999999999864 578889999999998754
Q ss_pred hhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccC
Q 004900 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG 350 (724)
Q Consensus 304 F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAG 350 (724)
++.+|||||+++++|||++++ +|| ++ |.+++.|+||+||+|
T Consensus 317 ---~~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ---MQFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred ---ccCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 378999999999999999987 566 45 899999999999997
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=296.67 Aligned_cols=333 Identities=23% Similarity=0.330 Sum_probs=245.6
Q ss_pred cCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCcEEEEcCCCchHHHHHHHH---HHcC-CCeEEEEcCcHHH
Q 004900 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIP---ALAK-PGIVLVVSPLIAL 90 (724)
Q Consensus 16 ~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~a-il~g~dvlv~apTGsGKTl~~~lp---al~~-~~~vLVlsPl~aL 90 (724)
.-..+.+++++...|+. .|++.+.|.|.-++.+ +++|.|.+|+.+|++||||+.-+. -++. +++-|+++|+.+|
T Consensus 195 ~vdeLdipe~fk~~lk~-~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVAL 273 (830)
T COG1202 195 PVDELDIPEKFKRMLKR-EGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVAL 273 (830)
T ss_pred cccccCCcHHHHHHHHh-cCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHh
Confidence 34557888999999998 5999999999999988 569999999999999999987754 4444 7899999999999
Q ss_pred HHHHHHHHHH----cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcc
Q 004900 91 MENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDE 166 (724)
Q Consensus 91 ~~qqv~~l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDE 166 (724)
++|.++.|+. +|+.+.+-.+..-....... -.....++.+|+++|.|-+.- .|..-...+.++.|||||
T Consensus 274 ANQKy~dF~~rYs~LglkvairVG~srIk~~~~p--v~~~t~~dADIIVGTYEGiD~-----lLRtg~~lgdiGtVVIDE 346 (830)
T COG1202 274 ANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEP--VVVDTSPDADIIVGTYEGIDY-----LLRTGKDLGDIGTVVIDE 346 (830)
T ss_pred hcchHHHHHHHhhcccceEEEEechhhhcccCCc--cccCCCCCCcEEEeechhHHH-----HHHcCCcccccceEEeee
Confidence 9999999887 45544332221111111100 011233568899999985431 122224567799999999
Q ss_pred cccccc--CCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCC-ceEEEEEeccchh
Q 004900 167 AHCISS--WGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDLLD 243 (724)
Q Consensus 167 AH~l~~--~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~-ni~~~v~~~~~~~ 243 (724)
+|.+.+ .|+. -+ .-+++++..+|+.|+++||||..+. ..+.+.|+..- +.+. .|| .+..++.......
T Consensus 347 iHtL~deERG~R--Ld-GLI~RLr~l~~~AQ~i~LSATVgNp--~elA~~l~a~l-V~y~---~RPVplErHlvf~~~e~ 417 (830)
T COG1202 347 IHTLEDEERGPR--LD-GLIGRLRYLFPGAQFIYLSATVGNP--EELAKKLGAKL-VLYD---ERPVPLERHLVFARNES 417 (830)
T ss_pred eeeccchhcccc--hh-hHHHHHHHhCCCCeEEEEEeecCCh--HHHHHHhCCee-Eeec---CCCCChhHeeeeecCch
Confidence 999976 4542 21 3478889999999999999998766 45567776532 2221 122 2334444444445
Q ss_pred hHHHHHHHHHHh--------cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEc
Q 004900 244 DAYADLCSVLKA--------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (724)
Q Consensus 244 ~k~~~L~~lLk~--------~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT 315 (724)
++...+..+.+. .-.+++|||++||+.|..||..|...|+++.+||+||+..+|..+...|.++++.++|+|
T Consensus 418 eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTT 497 (830)
T COG1202 418 EKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTT 497 (830)
T ss_pred HHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeeh
Confidence 666666666543 124579999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCcceEE---eeCCCC-CHHHHHHHHcccCCCCCC--CeEEEEEccc
Q 004900 316 VAFGMGIDRKDVRLVC---HFNIPK-SMEAFYQESGRAGRDQLP--SKSLLYYGMD 365 (724)
Q Consensus 316 ~a~g~GIDip~V~~VI---~~d~P~-S~~~yiQr~GRAGRdG~~--g~~il~~~~~ 365 (724)
-|++.|||+|.-.+|+ -.+.-| |+.+|.|+.|||||.+-+ |.++++..++
T Consensus 498 AAL~AGVDFPASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 498 AALAAGVDFPASQVIFESLAMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred hhhhcCCCCchHHHHHHHHHcccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999655443 123333 899999999999998864 5566665543
No 61
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=8.6e-32 Score=307.37 Aligned_cols=300 Identities=16% Similarity=0.109 Sum_probs=206.2
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHH---HcC-CCeEEEEcCcHHHHHHHHHHHHHcCCce----eee
Q 004900 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LAK-PGIVLVVSPLIALMENQVIGLKEKGIAG----EFL 108 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpa---l~~-~~~vLVlsPl~aL~~qqv~~l~~~gi~~----~~l 108 (724)
-.||++|.+++..++.+++.++++|||+|||+++...+ +.. .+.+|||+|+++|+.|+.+.++.++... ..+
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~~~i 192 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAMHKI 192 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccceeEE
Confidence 47999999999999999999999999999999765432 223 3489999999999999999999875321 111
Q ss_pred cccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHH
Q 004900 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (724)
Q Consensus 109 ~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~ 188 (724)
.++... .....|+++||+.+.... .. ....+++|||||||++..- .+..+.
T Consensus 193 ~~g~~~-------------~~~~~I~VaT~qsl~~~~-----~~--~~~~~~~iIvDEaH~~~~~---------~~~~il 243 (501)
T PHA02558 193 YSGTAK-------------DTDAPIVVSTWQSAVKQP-----KE--WFDQFGMVIVDECHLFTGK---------SLTSII 243 (501)
T ss_pred ecCccc-------------CCCCCEEEeeHHHHhhch-----hh--hccccCEEEEEchhcccch---------hHHHHH
Confidence 111110 123578888887664321 11 1345899999999998751 233444
Q ss_pred hhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccC----CC---CceEEEE-Ee--cc-----------------
Q 004900 189 NYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF----NR---PNLFYEV-RY--KD----------------- 240 (724)
Q Consensus 189 ~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~----~r---~ni~~~v-~~--~~----------------- 240 (724)
..++ ..++++||||+.......+ ...++-.+.....+. .. ....+.. .. ..
T Consensus 244 ~~~~~~~~~lGLTATp~~~~~~~~-~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 322 (501)
T PHA02558 244 TKLDNCKFKFGLTGSLRDGKANIL-QYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKY 322 (501)
T ss_pred HhhhccceEEEEeccCCCccccHH-HHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHH
Confidence 4454 4579999999975432111 111111121111100 00 0000000 00 00
Q ss_pred --chhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEc-
Q 004900 241 --LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT- 315 (724)
Q Consensus 241 --~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT- 315 (724)
....+...+..++.. ..+.++||||.++++++.|++.|...|.++..+||+++.++|..+++.|.+|+..|||||
T Consensus 323 l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~ 402 (501)
T PHA02558 323 ITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASY 402 (501)
T ss_pred HhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEc
Confidence 000111122222221 234678999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEcccc
Q 004900 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (724)
Q Consensus 316 ~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D 366 (724)
+.+++|+|+|++++||++.+|.|...|+|++||++|.+.....+++|+.-|
T Consensus 403 ~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 403 GVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred ceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 899999999999999999999999999999999999987665555555443
No 62
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.6e-31 Score=286.64 Aligned_cols=319 Identities=21% Similarity=0.272 Sum_probs=233.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHHHHHHHHHHH-cCCc---ee
Q 004900 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKE-KGIA---GE 106 (724)
Q Consensus 35 G~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~~qqv~~l~~-~gi~---~~ 106 (724)
+.-++|.||......++.+ +++|++|||-|||+++.+-+.. .++.+|+++||+-|+.|+...+.+ +|++ .+
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhhee
Confidence 3457899999998888766 8999999999999988776552 356899999999999999999988 5774 34
Q ss_pred eecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHH
Q 004900 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (724)
Q Consensus 107 ~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~ 186 (724)
.+++......+...|.. -+|++.||..+.+.- +....+...+.++|+||||+-.. ++ .|..+..
T Consensus 91 ~ltGev~p~~R~~~w~~-------~kVfvaTPQvveNDl----~~Grid~~dv~~lifDEAHRAvG-ny----AYv~Va~ 154 (542)
T COG1111 91 ALTGEVRPEEREELWAK-------KKVFVATPQVVENDL----KAGRIDLDDVSLLIFDEAHRAVG-NY----AYVFVAK 154 (542)
T ss_pred eecCCCChHHHHHHHhh-------CCEEEeccHHHHhHH----hcCccChHHceEEEechhhhccC-cc----hHHHHHH
Confidence 77788888888887764 689999999887642 23445556689999999998653 11 3555554
Q ss_pred -HHhhCCCCCEEEEeecCChhh--HHHHHHhhccCCCeEeec-cCC----------------------------------
Q 004900 187 -LRNYLPDVPILALTATAAPKV--QKDVMESLCLQNPLVLKS-SFN---------------------------------- 228 (724)
Q Consensus 187 -l~~~~p~~pil~LSAT~~~~v--~~di~~~l~l~~~~vi~~-s~~---------------------------------- 228 (724)
......+.-+++||||+.... ...+.+.|++.+..+-.. +.+
T Consensus 155 ~y~~~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~ 234 (542)
T COG1111 155 EYLRSAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKP 234 (542)
T ss_pred HHHHhccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHH
Confidence 333334567999999987643 345566666543211100 000
Q ss_pred --------------CC----c------eEEEEEe----------------------------------------------
Q 004900 229 --------------RP----N------LFYEVRY---------------------------------------------- 238 (724)
Q Consensus 229 --------------r~----n------i~~~v~~---------------------------------------------- 238 (724)
.+ + ..+....
T Consensus 235 ~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~ 314 (542)
T COG1111 235 RLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEAT 314 (542)
T ss_pred HHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhc
Confidence 00 0 0000000
Q ss_pred c----------------------------cchhhHHHHHHHHH----HhcCCceEEEEecccccHHHHHHHHHhCCCcee
Q 004900 239 K----------------------------DLLDDAYADLCSVL----KANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (724)
Q Consensus 239 ~----------------------------~~~~~k~~~L~~lL----k~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~ 286 (724)
. .....|++.+.+++ +..++.++|||++.|.+++.+.++|.+.|..+.
T Consensus 315 ~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~ 394 (542)
T COG1111 315 KGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR 394 (542)
T ss_pred ccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce
Confidence 0 00001222333333 334567899999999999999999999888774
Q ss_pred -e--------ecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCe
Q 004900 287 -A--------YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (724)
Q Consensus 287 -~--------~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~ 357 (724)
. ...||+++++.+++++|++|+++|||||++.+.|+|+|+|++||.|++..|.--++||.||+||. ..|.
T Consensus 395 ~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Gr 473 (542)
T COG1111 395 VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGR 473 (542)
T ss_pred eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCe
Confidence 2 23589999999999999999999999999999999999999999999999999999999999999 7899
Q ss_pred EEEEEccccHHHHH
Q 004900 358 SLLYYGMDDRRRME 371 (724)
Q Consensus 358 ~il~~~~~D~~~~~ 371 (724)
.++++..+++....
T Consensus 474 v~vLvt~gtrdeay 487 (542)
T COG1111 474 VVVLVTEGTRDEAY 487 (542)
T ss_pred EEEEEecCchHHHH
Confidence 99998887554433
No 63
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.8e-31 Score=302.33 Aligned_cols=326 Identities=21% Similarity=0.209 Sum_probs=234.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++.+|+. ++|.|..++..++.|+ |+.|.||+|||++|.+|++. .+..++||+|++.|+.|..+.+..
T Consensus 92 ~rEa~~R~lg~~-p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 92 VREASGRVLGQR-HFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred HHHHHHHHhCCC-CChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 445667778987 6799999999999999 99999999999999999985 467899999999999988888766
Q ss_pred --cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH----------------------hhhhc
Q 004900 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK----------------------KIHSR 156 (724)
Q Consensus 101 --~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~----------------------~~~~~ 156 (724)
+|+.+.++.++.....+...+ ..+|+|+|.--+.-......+. ...-.
T Consensus 169 ~~lGlsv~~i~gg~~~~~r~~~y--------~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~ 240 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDERRAAY--------GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLL 240 (656)
T ss_pred hhcCCEEEEEeCCCCHHHHHHHc--------CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcc
Confidence 588998888877655443322 3689999986443221111110 00113
Q ss_pred CCccEEEEccccccccC------------C-C--------------------CCh-------------------------
Q 004900 157 GLLNLVAIDEAHCISSW------------G-H--------------------DFR------------------------- 178 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~------------G-~--------------------dFr------------------------- 178 (724)
..+.+.||||+|.++=. + . +|.
T Consensus 241 r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l 320 (656)
T PRK12898 241 RGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESL 320 (656)
T ss_pred cccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcc
Confidence 45788999999987510 0 0 111
Q ss_pred -HHHH----H---HH-HHHhh--C----------------------------------------CCC-------------
Q 004900 179 -PSYR----K---LS-SLRNY--L----------------------------------------PDV------------- 194 (724)
Q Consensus 179 -p~y~----~---L~-~l~~~--~----------------------------------------p~~------------- 194 (724)
+.|. . +. .++.. + .++
T Consensus 321 ~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It 400 (656)
T PRK12898 321 PPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARIT 400 (656)
T ss_pred hhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeeh
Confidence 0010 0 00 00000 0 000
Q ss_pred ---------CEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceE--EEEEeccchhhHHHHHHHHHHhc--CCceE
Q 004900 195 ---------PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLF--YEVRYKDLLDDAYADLCSVLKAN--GDTCA 261 (724)
Q Consensus 195 ---------pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~--~~v~~~~~~~~k~~~L~~lLk~~--~~~~~ 261 (724)
.+.+||||+... ..++.+.+++. ++..+.++|++. +.........++...|.+.++.. .+.++
T Consensus 401 ~q~~Fr~Y~kl~GmTGTa~~~-~~El~~~y~l~---vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pv 476 (656)
T PRK12898 401 YQRFFRRYLRLAGMTGTAREV-AGELWSVYGLP---VVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPV 476 (656)
T ss_pred HHHHHHhhHHHhcccCcChHH-HHHHHHHHCCC---eEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCE
Confidence 167899999864 46677777664 333455555542 22111222356777788777653 25679
Q ss_pred EEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCC---Ccc-----eEEee
Q 004900 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHF 333 (724)
Q Consensus 262 IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip---~V~-----~VI~~ 333 (724)
||||+|++.++.++..|...|+++..+||++...++. +..|..+...|+|||+++|||+|++ +|. +||+|
T Consensus 477 LIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE~~--ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~ 554 (656)
T PRK12898 477 LVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAA--IVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILT 554 (656)
T ss_pred EEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcHHHHHH--HHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEc
Confidence 9999999999999999999999999999987655544 4455555567999999999999999 777 99999
Q ss_pred CCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHH
Q 004900 334 NIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (724)
Q Consensus 334 d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~ 368 (724)
++|.|...|.||+||+||.|.+|.+++|++.+|.-
T Consensus 555 d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD~l 589 (656)
T PRK12898 555 ERHDSARIDRQLAGRCGRQGDPGSYEAILSLEDDL 589 (656)
T ss_pred CCCCCHHHHHHhcccccCCCCCeEEEEEechhHHH
Confidence 99999999999999999999999999999987743
No 64
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.9e-31 Score=308.17 Aligned_cols=297 Identities=19% Similarity=0.240 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCchHHHH---------HHHHHHc---------CCCeEEEEcCcHHHHHHHHHHHHH-c
Q 004900 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMC---------YQIPALA---------KPGIVLVVSPLIALMENQVIGLKE-K 101 (724)
Q Consensus 41 ~~Q~eaI~ail~g~dvlv~apTGsGKTl~---------~~lpal~---------~~~~vLVlsPl~aL~~qqv~~l~~-~ 101 (724)
..|.++++.+++|++++++|+||+|||.+ |++|.+. ..+.++|++|+++|+.|....+.. .
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~v 246 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSL 246 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHh
Confidence 38899999999999999999999999986 3333322 245899999999999998888765 2
Q ss_pred C------CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCC
Q 004900 102 G------IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (724)
Q Consensus 102 g------i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~ 175 (724)
| .++....++.... ... ... ...+++++|+.+.. .....+++|||||||.++..+.
T Consensus 247 g~~~~~g~~v~v~~Gg~~~~----~~~-t~~--k~~~Ilv~T~~L~l-----------~~L~~v~~VVIDEaHEr~~~~D 308 (675)
T PHA02653 247 GFDEIDGSPISLKYGSIPDE----LIN-TNP--KPYGLVFSTHKLTL-----------NKLFDYGTVIIDEVHEHDQIGD 308 (675)
T ss_pred CccccCCceEEEEECCcchH----Hhh-ccc--CCCCEEEEeCcccc-----------cccccCCEEEccccccCccchh
Confidence 2 2233444444311 101 110 12467777754211 1234589999999999987652
Q ss_pred CChHHHHHHHHHHhhCCC-CCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC-CCceEEEEEecc--------chhhH
Q 004900 176 DFRPSYRKLSSLRNYLPD-VPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPNLFYEVRYKD--------LLDDA 245 (724)
Q Consensus 176 dFrp~y~~L~~l~~~~p~-~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~-r~ni~~~v~~~~--------~~~~k 245 (724)
..++-++...+. .++++||||++.++. .+...+ .++.++..+-. ...+........ .....
T Consensus 309 ------llL~llk~~~~~~rq~ILmSATl~~dv~-~l~~~~--~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~ 379 (675)
T PHA02653 309 ------IIIAVARKHIDKIRSLFLMTATLEDDRD-RIKEFF--PNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEE 379 (675)
T ss_pred ------HHHHHHHHhhhhcCEEEEEccCCcHhHH-HHHHHh--cCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHH
Confidence 112223333232 479999999987764 344444 35554443211 112221111000 00111
Q ss_pred HHHHHHHHHh---cCCceEEEEecccccHHHHHHHHHhC--CCceeeecCCCCHHHHHHHHHHh-hcCCceEEEEccccc
Q 004900 246 YADLCSVLKA---NGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDW-ISSRKQVVVATVAFG 319 (724)
Q Consensus 246 ~~~L~~lLk~---~~~~~~IIf~~sr~~~e~La~~L~~~--gi~v~~~H~~l~~~eR~~vl~~F-~~g~~~VLVAT~a~g 319 (724)
...+...+.. ..++++||||+++.+++.+++.|.+. ++.+..+||+|++. .+++++| .+|+.+|||||++++
T Consensus 380 k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAE 457 (675)
T PHA02653 380 KKNIVTALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLE 457 (675)
T ss_pred HHHHHHHHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhh
Confidence 1122222322 23457999999999999999999887 78999999999975 4667777 689999999999999
Q ss_pred cccCCCCcceEEeeC---CCC---------CHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 320 MGIDRKDVRLVCHFN---IPK---------SMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 320 ~GIDip~V~~VI~~d---~P~---------S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
+|||+|+|++||++| .|. |.++|.||+|||||. .+|.|+.+|+.++.
T Consensus 458 RGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~ 516 (675)
T PHA02653 458 SSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLL 516 (675)
T ss_pred ccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHHHh
Confidence 999999999999999 665 889999999999999 79999999998764
No 65
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.98 E-value=9.6e-31 Score=311.34 Aligned_cols=335 Identities=22% Similarity=0.264 Sum_probs=242.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC-----CCeEEEEcCcHHHHHHHHHHH
Q 004900 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----PGIVLVVSPLIALMENQVIGL 98 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~-----~~~vLVlsPl~aL~~qqv~~l 98 (724)
..+...|.. .|+..|+.+|.+|+..+.+|+|++|..|||||||+||++|++.. ..++|+|.||++|++||+++|
T Consensus 57 ~~l~~~l~~-~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl 135 (851)
T COG1205 57 ESLKSALVK-AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERL 135 (851)
T ss_pred hHHHHHHHH-hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHH
Confidence 344556666 58888999999999999999999999999999999999999852 457799999999999999999
Q ss_pred HHc----C--CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc-
Q 004900 99 KEK----G--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS- 171 (724)
Q Consensus 99 ~~~----g--i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~- 171 (724)
+++ + +.+..+++......+..++. + ..+|++++|.|+........-.-......+.+|||||+|-.-
T Consensus 136 ~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~----~--pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG 209 (851)
T COG1205 136 RELISDLPGKVTFGRYTGDTPPEERRAIIR----N--PPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG 209 (851)
T ss_pred HHHHHhCCCcceeeeecCCCChHHHHHHHh----C--CCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc
Confidence 884 3 56666677776666654443 2 378999999987542211111111222338999999999863
Q ss_pred cCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeE-eeccCCCCceEEEEEecc-c-------
Q 004900 172 SWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV-LKSSFNRPNLFYEVRYKD-L------- 241 (724)
Q Consensus 172 ~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~v-i~~s~~r~ni~~~v~~~~-~------- 241 (724)
-.|.+..-..++|..+.+.++ +.++|+.|||...... ...+..+ ..... +..+-......+.+.... .
T Consensus 210 v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e-~~~~l~~-~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~ 287 (851)
T COG1205 210 VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGE-FAEELFG-RDFEVPVDEDGSPRGLRYFVRREPPIRELAESI 287 (851)
T ss_pred cchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHH-HHHHhcC-CcceeeccCCCCCCCceEEEEeCCcchhhhhhc
Confidence 245555566667776666665 5789999999876532 2233333 22222 322222222222222222 0
Q ss_pred hhhHHHHHHHHHHh--cCCceEEEEecccccHHHHH----HHHHhCC----CceeeecCCCCHHHHHHHHHHhhcCCceE
Q 004900 242 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELS----AYLSAGG----ISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (724)
Q Consensus 242 ~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La----~~L~~~g----i~v~~~H~~l~~~eR~~vl~~F~~g~~~V 311 (724)
.......+..++.. ..+-++|+|+.+++.++.++ ..+...+ ..+..|+|+|...+|..+...|++|++.+
T Consensus 288 r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~ 367 (851)
T COG1205 288 RRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLG 367 (851)
T ss_pred ccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccE
Confidence 01222222222221 24568999999999999997 4444445 56889999999999999999999999999
Q ss_pred EEEccccccccCCCCcceEEeeCCCC-CHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 312 VVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 312 LVAT~a~g~GIDip~V~~VI~~d~P~-S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
+++|+++.-|||+.+++.||.++.|. ++.++.|+.|||||.++.+..++.+..+..
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~ 424 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPL 424 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCCCceEEEEeCCCcc
Confidence 99999999999999999999999999 999999999999999988877777664443
No 66
>PRK13766 Hef nuclease; Provisional
Probab=99.98 E-value=3.3e-30 Score=309.43 Aligned_cols=315 Identities=21% Similarity=0.264 Sum_probs=223.1
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHHHHHHHHHHHc-CC---ceee
Q 004900 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEF 107 (724)
Q Consensus 36 ~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~~qqv~~l~~~-gi---~~~~ 107 (724)
.-++|++|.+++..++.+ ++++++|||+|||+++++++.. .++++|||+|+++|+.|+...++.+ ++ .+..
T Consensus 13 ~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~ 91 (773)
T PRK13766 13 TIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVV 91 (773)
T ss_pred cCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEE
Confidence 346899999999988887 9999999999999998877653 3689999999999999999999874 44 4555
Q ss_pred ecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHH-HH
Q 004900 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL-SS 186 (724)
Q Consensus 108 l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L-~~ 186 (724)
+++......+...+. ..+|+++||+.+.... +........+++|||||||++.... .|..+ ..
T Consensus 92 ~~g~~~~~~r~~~~~-------~~~iiv~T~~~l~~~l----~~~~~~~~~~~liVvDEaH~~~~~~-----~~~~i~~~ 155 (773)
T PRK13766 92 FTGEVSPEKRAELWE-------KAKVIVATPQVIENDL----IAGRISLEDVSLLIFDEAHRAVGNY-----AYVYIAER 155 (773)
T ss_pred EeCCCCHHHHHHHHh-------CCCEEEECHHHHHHHH----HcCCCChhhCcEEEEECCccccccc-----cHHHHHHH
Confidence 666665555544443 2579999998765321 1223334568999999999986421 12222 23
Q ss_pred HHhhCCCCCEEEEeecCChh--hHHHHHHhhccCCCeEee-------ccCCCCceEEEEE--------------------
Q 004900 187 LRNYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLK-------SSFNRPNLFYEVR-------------------- 237 (724)
Q Consensus 187 l~~~~p~~pil~LSAT~~~~--v~~di~~~l~l~~~~vi~-------~s~~r~ni~~~v~-------------------- 237 (724)
++...+...+++||||+... ....+...|++....+.. .....+.+.+...
T Consensus 156 ~~~~~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~ 235 (773)
T PRK13766 156 YHEDAKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDR 235 (773)
T ss_pred HHhcCCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHH
Confidence 34444456699999998533 122333333321100000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 004900 238 -------------------------------------------------------------------------------- 237 (724)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (724)
T Consensus 236 l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~ 315 (773)
T PRK13766 236 LKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEAR 315 (773)
T ss_pred HHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhcc
Confidence
Q ss_pred -------------------------eccchhhHHHHHHHHHHh----cCCceEEEEecccccHHHHHHHHHhCCCceeee
Q 004900 238 -------------------------YKDLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (724)
Q Consensus 238 -------------------------~~~~~~~k~~~L~~lLk~----~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~ 288 (724)
.......++..|.++|+. .++.++||||.++.+|+.|+..|...|+.+..+
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~ 395 (773)
T PRK13766 316 SSGGSKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRF 395 (773)
T ss_pred ccCCcHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEE
Confidence 000001233444455543 467789999999999999999999999999999
Q ss_pred cCC--------CCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEE
Q 004900 289 HAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (724)
Q Consensus 289 H~~--------l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il 360 (724)
||. |++.+|..++++|++|+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|. +.+++
T Consensus 396 ~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~-~~v~~ 474 (773)
T PRK13766 396 VGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE-GRVVV 474 (773)
T ss_pred EccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCCC-CEEEE
Confidence 886 999999999999999999999999999999999999999999999999999999999999875 77777
Q ss_pred EEccccHH
Q 004900 361 YYGMDDRR 368 (724)
Q Consensus 361 ~~~~~D~~ 368 (724)
++..+...
T Consensus 475 l~~~~t~e 482 (773)
T PRK13766 475 LIAKGTRD 482 (773)
T ss_pred EEeCCChH
Confidence 77655443
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=8.2e-30 Score=297.80 Aligned_cols=326 Identities=21% Similarity=0.222 Sum_probs=240.2
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++.+|+ .+++.|..++..+..|+ |+.|.||+|||++|.+|++. .+..++|++|++.|+.|..+.+..
T Consensus 67 vrea~~R~~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 67 VREAAKRVLGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred HHHHHHHHhCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 45667778888 48899999888888776 99999999999999999974 688999999999999998888766
Q ss_pred --cCCceeeecccch-HHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH---hhhhcCCccEEEEccccccccC-
Q 004900 101 --KGIAGEFLSSTQT-MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW- 173 (724)
Q Consensus 101 --~gi~~~~l~s~~~-~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~---~~~~~~~l~lIVIDEAH~l~~~- 173 (724)
+|+.+.++.++.. ...+...+ ..+|+|+||-.++-..+...+. .......+.++||||||.|+=.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~y--------~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDe 215 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAIY--------EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDE 215 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHhc--------CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceecc
Confidence 5889988888777 55544332 2789999998764332222221 1123456899999999998510
Q ss_pred ------------------------------CCCCh-----------------------------HHHHHH-----HHHHh
Q 004900 174 ------------------------------GHDFR-----------------------------PSYRKL-----SSLRN 189 (724)
Q Consensus 174 ------------------------------G~dFr-----------------------------p~y~~L-----~~l~~ 189 (724)
+-+|. +.+..+ ..++.
T Consensus 216 a~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A 295 (790)
T PRK09200 216 AQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRA 295 (790)
T ss_pred CCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHH
Confidence 00111 111111 01111
Q ss_pred hC--------------------------C----------------CC----------------------CEEEEeecCCh
Q 004900 190 YL--------------------------P----------------DV----------------------PILALTATAAP 205 (724)
Q Consensus 190 ~~--------------------------p----------------~~----------------------pil~LSAT~~~ 205 (724)
.+ + ++ .+.+||+|+..
T Consensus 296 ~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t 375 (790)
T PRK09200 296 HVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKT 375 (790)
T ss_pred HHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChH
Confidence 00 0 00 16677777754
Q ss_pred hhHHHHHHhhccCCCeEeeccCCCCceEEEEE--eccchhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhC
Q 004900 206 KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (724)
Q Consensus 206 ~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~--~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~ 281 (724)
. ..++.+..++ .++..+.++|.+..... ......+++..|...+.. ..+.++||||+|++.++.++..|.+.
T Consensus 376 ~-~~e~~~~Y~l---~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~ 451 (790)
T PRK09200 376 E-EKEFFEVYNM---EVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEA 451 (790)
T ss_pred H-HHHHHHHhCC---cEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 3 2344444333 45556777777654321 111235677777777754 35678999999999999999999999
Q ss_pred CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCC---CCcc-----eEEeeCCCCCHHHHHHHHcccCCCC
Q 004900 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR---KDVR-----LVCHFNIPKSMEAFYQESGRAGRDQ 353 (724)
Q Consensus 282 gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDi---p~V~-----~VI~~d~P~S~~~yiQr~GRAGRdG 353 (724)
|+++..+||++.+.++..+...+..| .|+|||+++|||+|+ |+|. +||+|++|.+...|.||+||+||.|
T Consensus 452 gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G 529 (790)
T PRK09200 452 GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG 529 (790)
T ss_pred CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC
Confidence 99999999999999988888887766 799999999999999 6999 9999999999999999999999999
Q ss_pred CCCeEEEEEccccHH
Q 004900 354 LPSKSLLYYGMDDRR 368 (724)
Q Consensus 354 ~~g~~il~~~~~D~~ 368 (724)
.+|.++.|++.+|.-
T Consensus 530 ~~G~s~~~is~eD~l 544 (790)
T PRK09200 530 DPGSSQFFISLEDDL 544 (790)
T ss_pred CCeeEEEEEcchHHH
Confidence 999999999977643
No 68
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.97 E-value=1.2e-29 Score=294.00 Aligned_cols=323 Identities=18% Similarity=0.173 Sum_probs=231.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH---
Q 004900 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (724)
Q Consensus 27 ~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~--- 100 (724)
..+.++.+|. +|+|.+++..+..++..++.|+||+|||++|.+|++. .+..++||+|++.|+.|+.+.+..
T Consensus 60 rEa~~R~lgl---rpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~ 136 (762)
T TIGR03714 60 READKRVLGM---FPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYE 136 (762)
T ss_pred HHHHHhhcCC---CccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHh
Confidence 3455556664 6777777777766666899999999999999999874 466799999999999999988744
Q ss_pred -cCCceeeeccc-----chHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh---hhhcCCccEEEEccccccc
Q 004900 101 -KGIAGEFLSST-----QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 101 -~gi~~~~l~s~-----~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~---~~~~~~l~lIVIDEAH~l~ 171 (724)
+|+.+.....+ .....+... ...+|+|+||..+....+...+.. ......+.++||||||+|+
T Consensus 137 ~LGLsv~~~~~~s~~~~~~~~~rr~~--------y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 137 WLGLTVSLGVVDDPDEEYDANEKRKI--------YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred hcCCcEEEEECCCCccccCHHHHHHh--------CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 68887765543 111222211 137899999998865444333321 1224568899999999995
Q ss_pred cCC-------------------------------CCChH------------HHHHHHHH---------------------
Q 004900 172 SWG-------------------------------HDFRP------------SYRKLSSL--------------------- 187 (724)
Q Consensus 172 ~~G-------------------------------~dFrp------------~y~~L~~l--------------------- 187 (724)
-.. -||.- ....+..+
T Consensus 209 iDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~a 288 (762)
T TIGR03714 209 LDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLA 288 (762)
T ss_pred hccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHH
Confidence 210 01100 00011110
Q ss_pred -Hhh--C------------------------C--------------------------------------CCCEEEEeec
Q 004900 188 -RNY--L------------------------P--------------------------------------DVPILALTAT 202 (724)
Q Consensus 188 -~~~--~------------------------p--------------------------------------~~pil~LSAT 202 (724)
+.. + + -..+.+||+|
T Consensus 289 l~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGT 368 (762)
T TIGR03714 289 LRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGT 368 (762)
T ss_pred HHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCC
Confidence 000 0 0 0116788888
Q ss_pred CChhhHHHHHHhhccCCCeEeeccCCCCceEEEE---EeccchhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHH
Q 004900 203 AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAY 277 (724)
Q Consensus 203 ~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v---~~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~ 277 (724)
+... ..++.+.. +-.++..+.++|.+.... .+.. ..+++..+.+.++. ..+.++||||+|++.++.++..
T Consensus 369 a~~~-~~Ef~~iY---~l~v~~IPt~kp~~r~d~~d~i~~~-~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~ 443 (762)
T TIGR03714 369 GKVA-EKEFIETY---SLSVVKIPTNKPIIRIDYPDKIYAT-LPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSEL 443 (762)
T ss_pred ChhH-HHHHHHHh---CCCEEEcCCCCCeeeeeCCCeEEEC-HHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHH
Confidence 7543 34444433 334566677777765542 2222 35677777777755 4567899999999999999999
Q ss_pred HHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCC---------CcceEEeeCCCCCHHHHHHHHcc
Q 004900 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---------DVRLVCHFNIPKSMEAFYQESGR 348 (724)
Q Consensus 278 L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip---------~V~~VI~~d~P~S~~~yiQr~GR 348 (724)
|.+.|+++..+||++.+.++..+.+.+..| .|+|||+.+|||+|++ ++.+|+++++|..... .||+||
T Consensus 444 L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GR 520 (762)
T TIGR03714 444 LLREGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGR 520 (762)
T ss_pred HHHCCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhc
Confidence 999999999999999999998888777777 6999999999999999 9999999999988777 999999
Q ss_pred cCCCCCCCeEEEEEccccHH
Q 004900 349 AGRDQLPSKSLLYYGMDDRR 368 (724)
Q Consensus 349 AGRdG~~g~~il~~~~~D~~ 368 (724)
+||.|.+|.++.|++.+|.-
T Consensus 521 tGRqG~~G~s~~~is~eD~l 540 (762)
T TIGR03714 521 SGRQGDPGSSQFFVSLEDDL 540 (762)
T ss_pred ccCCCCceeEEEEEccchhh
Confidence 99999999999999987753
No 69
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=1e-29 Score=311.20 Aligned_cols=290 Identities=19% Similarity=0.274 Sum_probs=203.4
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHH----cCCCeEEEEcCcHHHHHHHHHHHH
Q 004900 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLK 99 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal----~~~~~vLVlsPl~aL~~qqv~~l~ 99 (724)
.++.+.+.+..|+ .|+++|..+++.++.|+|++++||||+|||+ |.+|+. ..+.++|||+||++|+.|+.+.++
T Consensus 65 ~~f~~~f~~~~g~-~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 65 KEFEEFFKKAVGS-EPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHH
Confidence 3455555565566 5999999999999999999999999999998 555543 246789999999999999999988
Q ss_pred Hc----CCcee---eecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 100 EK----GIAGE---FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 100 ~~----gi~~~---~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
.+ |+... .++++.....+......+..+. .+|+++||..+. ........ .+++|||||||++++
T Consensus 143 ~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~--~dIlV~Tp~rL~------~~~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 143 SLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGD--FDILITTTMFLS------KNYDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHH------HHHHHhcC-CCCEEEEeChHhhhh
Confidence 75 33332 3567776666655555555543 678888876543 22111112 699999999999998
Q ss_pred CC---------CCChHHH-HHH-------------------HHHHhhCC-CCC--EEEEeecCChh-hHHHHHHhhccCC
Q 004900 173 WG---------HDFRPSY-RKL-------------------SSLRNYLP-DVP--ILALTATAAPK-VQKDVMESLCLQN 219 (724)
Q Consensus 173 ~G---------~dFrp~y-~~L-------------------~~l~~~~p-~~p--il~LSAT~~~~-v~~di~~~l~l~~ 219 (724)
|+ ..|.++. ..+ ..+....| ..+ ++++|||+.+. +...+. .+
T Consensus 214 ~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~-----r~ 288 (1171)
T TIGR01054 214 ASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLF-----RE 288 (1171)
T ss_pred ccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHc-----cc
Confidence 64 2366541 221 11222233 333 56789995443 332222 12
Q ss_pred CeEeec---cCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEeccc---ccHHHHHHHHHhCCCceeeecCCCC
Q 004900 220 PLVLKS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLER---TTCDELSAYLSAGGISCAAYHAGLN 293 (724)
Q Consensus 220 ~~vi~~---s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr---~~~e~La~~L~~~gi~v~~~H~~l~ 293 (724)
...+.. .....|+........ .....|.++++..+ ..+||||+++ +.|+.|+..|.+.|+++..+||+++
T Consensus 289 ll~~~v~~~~~~~r~I~~~~~~~~---~~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~ 364 (1171)
T TIGR01054 289 LLGFEVGGGSDTLRNVVDVYVEDE---DLKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP 364 (1171)
T ss_pred ccceEecCccccccceEEEEEecc---cHHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC
Confidence 211211 122334433332222 12345667776654 5699999999 9999999999999999999999997
Q ss_pred HHHHHHHHHHhhcCCceEEEE----ccccccccCCCC-cceEEeeCCCC
Q 004900 294 DKARSSVLDDWISSRKQVVVA----TVAFGMGIDRKD-VRLVCHFNIPK 337 (724)
Q Consensus 294 ~~eR~~vl~~F~~g~~~VLVA----T~a~g~GIDip~-V~~VI~~d~P~ 337 (724)
+ .++++|++|+++|||| |++++||||+|+ |++|||||+|+
T Consensus 365 ~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 365 K----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPK 409 (1171)
T ss_pred H----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEECCCC
Confidence 3 6899999999999999 589999999999 89999999995
No 70
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.97 E-value=8.5e-30 Score=302.71 Aligned_cols=300 Identities=19% Similarity=0.207 Sum_probs=207.3
Q ss_pred HHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC---CCeEEEEcCcHHHHHHHHHHHHH-cCCceeeecccchHHHHHH
Q 004900 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTK 119 (724)
Q Consensus 44 ~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~---~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~~~~ 119 (724)
.+.+.++.+++++++.||||+|||++|.++++.. .+.+||+.|+++++.|..+.+.. +|.......+......
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~--- 87 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAE--- 87 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCc---
Confidence 3566777788999999999999999999998864 46899999999999999988854 4433211111000000
Q ss_pred HHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhh-CCCCCEEE
Q 004900 120 IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILA 198 (724)
Q Consensus 120 i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~-~p~~pil~ 198 (724)
.......+|+|+||.++. ..+........+++|||||+|..+- ..|+. +.-+..+... .++.++++
T Consensus 88 -----~~~~~~t~I~v~T~G~Ll-----r~l~~d~~L~~v~~IIlDEaHER~l-~~Dl~--L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 88 -----SKVGPNTRLEVVTEGILT-----RMIQRDPELSGVGLVILDEFHERSL-QADLA--LALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred -----cccCCCCcEEEEChhHHH-----HHHhhCCCcCcCcEEEEcCCCcccc-ccchH--HHHHHHHHHhCCccceEEE
Confidence 001123567777776542 2233334567799999999997321 11221 1112233332 35789999
Q ss_pred EeecCChhhHHHHHHhhccCCCeEeec-cCCCCceEEEEEeccchhhHH-----HHHHHHHHhcCCceEEEEecccccHH
Q 004900 199 LTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAY-----ADLCSVLKANGDTCAIVYCLERTTCD 272 (724)
Q Consensus 199 LSAT~~~~v~~di~~~l~l~~~~vi~~-s~~r~ni~~~v~~~~~~~~k~-----~~L~~lLk~~~~~~~IIf~~sr~~~e 272 (724)
||||++.... ...+ .++.++.. +...| +...+..... .+++ ..+..++.. ..+.+||||+++.+++
T Consensus 155 mSATl~~~~l---~~~~--~~~~~I~~~gr~~p-V~~~y~~~~~-~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~ 226 (812)
T PRK11664 155 MSATLDNDRL---QQLL--PDAPVIVSEGRSFP-VERRYQPLPA-HQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQ 226 (812)
T ss_pred EecCCCHHHH---HHhc--CCCCEEEecCcccc-ceEEeccCch-hhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHH
Confidence 9999987633 3333 23333322 21111 2111111111 1122 234444443 3467999999999999
Q ss_pred HHHHHHHh---CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCC------------
Q 004900 273 ELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------ 337 (724)
Q Consensus 273 ~La~~L~~---~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~------------ 337 (724)
.+++.|.. .++.+..+||+|+.++|..+++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 227 ~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~ 306 (812)
T PRK11664 227 RVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTR 306 (812)
T ss_pred HHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcce
Confidence 99999987 578899999999999999999999999999999999999999999999999988875
Q ss_pred ------CHHHHHHHHcccCCCCCCCeEEEEEccccHH
Q 004900 338 ------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (724)
Q Consensus 338 ------S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~ 368 (724)
|-.+|.||+|||||. .+|.|+.+|+..+..
T Consensus 307 L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~ 342 (812)
T PRK11664 307 LVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAE 342 (812)
T ss_pred eEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHh
Confidence 346899999999999 699999999977654
No 71
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.2e-29 Score=300.85 Aligned_cols=304 Identities=18% Similarity=0.169 Sum_probs=210.1
Q ss_pred HHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC---CCeEEEEcCcHHHHHHHHHHHHH-cCCceeeecccchHHHHH
Q 004900 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKT 118 (724)
Q Consensus 43 Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~---~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~~~ 118 (724)
-.+.+.++.++++++++++||+|||.+|.++++.. .+.+||+.|++.++.+....+.. ++.......+......
T Consensus 7 ~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~-- 84 (819)
T TIGR01970 7 LPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE-- 84 (819)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc--
Confidence 34566777788999999999999999999988753 56899999999999999988853 4433211111000000
Q ss_pred HHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccc-cccCCCCChHHHHHHHHHHhh-CCCCCE
Q 004900 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNY-LPDVPI 196 (724)
Q Consensus 119 ~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~-l~~~G~dFrp~y~~L~~l~~~-~p~~pi 196 (724)
. ......+|+|+||.++. ..+........+++|||||+|. ..+- ||--.+ +..+... .++.++
T Consensus 85 ----~--~~s~~t~I~v~T~G~Ll-----r~l~~d~~L~~v~~VIiDEaHER~L~~--Dl~L~l--l~~i~~~lr~dlql 149 (819)
T TIGR01970 85 ----N--KVSRRTRLEVVTEGILT-----RMIQDDPELDGVGALIFDEFHERSLDA--DLGLAL--ALDVQSSLREDLKI 149 (819)
T ss_pred ----c--ccCCCCcEEEECCcHHH-----HHHhhCcccccCCEEEEeccchhhhcc--chHHHH--HHHHHHhcCCCceE
Confidence 0 11123678888876543 2333334566799999999995 4442 222111 2233332 357899
Q ss_pred EEEeecCChhhHHHHHHhhccCCCeEeeccCCCC-ceEEEEEec-cch-hhHHHHHHHHHHhcCCceEEEEecccccHHH
Q 004900 197 LALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYK-DLL-DDAYADLCSVLKANGDTCAIVYCLERTTCDE 273 (724)
Q Consensus 197 l~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~-ni~~~v~~~-~~~-~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~ 273 (724)
++||||++.... .+.++ ..+.+...+...| .++|..... ... ......+..++... .+.+||||+++.+++.
T Consensus 150 IlmSATl~~~~l---~~~l~-~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~-~g~iLVFlpg~~eI~~ 224 (819)
T TIGR01970 150 LAMSATLDGERL---SSLLP-DAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASE-TGSILVFLPGQAEIRR 224 (819)
T ss_pred EEEeCCCCHHHH---HHHcC-CCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHhc-CCcEEEEECCHHHHHH
Confidence 999999997653 33332 1233222221111 112211111 000 11122344444443 4679999999999999
Q ss_pred HHHHHHh---CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCC-------------
Q 004900 274 LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------- 337 (724)
Q Consensus 274 La~~L~~---~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~------------- 337 (724)
++..|.+ .++.+..+||+|++++|..+++.|.+|+.+|||||+++++|||+|+|++||++++|+
T Consensus 225 l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L 304 (819)
T TIGR01970 225 VQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRL 304 (819)
T ss_pred HHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCcee
Confidence 9999987 478899999999999999999999999999999999999999999999999999985
Q ss_pred -----CHHHHHHHHcccCCCCCCCeEEEEEccccHHH
Q 004900 338 -----SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (724)
Q Consensus 338 -----S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~ 369 (724)
|-.+|.||+|||||. .+|.|+.+|+..+...
T Consensus 305 ~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~ 340 (819)
T TIGR01970 305 ETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQR 340 (819)
T ss_pred eEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHh
Confidence 335699999999999 7999999999876654
No 72
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.8e-29 Score=292.51 Aligned_cols=304 Identities=17% Similarity=0.183 Sum_probs=207.8
Q ss_pred CCCHHHHHHHHHHHc-C--CcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcC-Ccee---eecc
Q 004900 38 QFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG-IAGE---FLSS 110 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~-g--~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~g-i~~~---~l~s 110 (724)
.+||+|.+++..+.. | +..++++|||+|||++.+..+......+|||||+..|+.||.+++.++. +... .+.+
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~tg 334 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFTS 334 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence 589999999999884 3 4789999999999999876666567889999999999999999999863 3222 1221
Q ss_pred cchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHH----HHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHH
Q 004900 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (724)
Q Consensus 111 ~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l----~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~ 186 (724)
.. +... .....|+++|+.++...... ...........+++||+||||.+.. +.|..
T Consensus 335 ~~----k~~~-------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA------~~fr~--- 394 (732)
T TIGR00603 335 DA----KERF-------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA------AMFRR--- 394 (732)
T ss_pred Cc----cccc-------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH------HHHHH---
Confidence 11 0000 11256888999877542111 1112222334589999999999854 22332
Q ss_pred HHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc--------CCCCceEEEEEecc------------------
Q 004900 187 LRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------FNRPNLFYEVRYKD------------------ 240 (724)
Q Consensus 187 l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s--------~~r~ni~~~v~~~~------------------ 240 (724)
+...+.....++||||+...... +.....+-.|.++..+ +-.+...+.+...-
T Consensus 395 il~~l~a~~RLGLTATP~ReD~~-~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~ 473 (732)
T TIGR00603 395 VLTIVQAHCKLGLTATLVREDDK-ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRML 473 (732)
T ss_pred HHHhcCcCcEEEEeecCcccCCc-hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhH
Confidence 33344456689999999754321 1111112234433221 11111111221110
Q ss_pred ---chhhHHHHHHHHHHhc--CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcC-CceEEEE
Q 004900 241 ---LLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVA 314 (724)
Q Consensus 241 ---~~~~k~~~L~~lLk~~--~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g-~~~VLVA 314 (724)
....++..+..+++.+ .+.++||||.+...++.++..|. +..+||++++.+|..++++|++| .+++||+
T Consensus 474 l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 474 LYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred HhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 0123444555556543 66799999999999999988872 46689999999999999999865 8899999
Q ss_pred ccccccccCCCCcceEEeeCCC-CCHHHHHHHHcccCCCCCCCeE-------EEEEccccH
Q 004900 315 TVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQLPSKS-------LLYYGMDDR 367 (724)
Q Consensus 315 T~a~g~GIDip~V~~VI~~d~P-~S~~~yiQr~GRAGRdG~~g~~-------il~~~~~D~ 367 (724)
|+++++|||+|++++||+++.| .|...|+||+||++|.+..+.+ +.+++.+..
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~ 609 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQ 609 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCch
Confidence 9999999999999999999988 5999999999999998866553 555655443
No 73
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.97 E-value=7.9e-29 Score=291.22 Aligned_cols=318 Identities=19% Similarity=0.209 Sum_probs=234.1
Q ss_pred CCCHHHHHHHHHHHcC---CcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHHHHHHHHHHHHH-cCCceeeecc
Q 004900 38 QFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSS 110 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g---~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l~s 110 (724)
.+++.|.++++.+.++ +++++.+|||+|||.+|+.++ +..++.+||++|+++|+.|+++.+++ +|+.+..+++
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s 223 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHS 223 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5899999999999974 789999999999999998665 34678999999999999999999987 6888999999
Q ss_pred cchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHH--HHHHHHH
Q 004900 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLR 188 (724)
Q Consensus 111 ~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y--~~L~~l~ 188 (724)
+.+...+...+..+..+. .+|+++|+..+.. ...++++|||||+|..+.++.+ .|.| +.+..++
T Consensus 224 ~~s~~~r~~~~~~~~~g~--~~IVVgTrsal~~-----------p~~~l~liVvDEeh~~s~~~~~-~p~y~~r~va~~r 289 (679)
T PRK05580 224 GLSDGERLDEWRKAKRGE--AKVVIGARSALFL-----------PFKNLGLIIVDEEHDSSYKQQE-GPRYHARDLAVVR 289 (679)
T ss_pred CCCHHHHHHHHHHHHcCC--CCEEEeccHHhcc-----------cccCCCEEEEECCCccccccCc-CCCCcHHHHHHHH
Confidence 988888888887777664 7899998865432 2355899999999998876654 4444 5677777
Q ss_pred hhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccC---CCCceEEEEEec--------cchhhHHHHHHHHHHhcC
Q 004900 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFYEVRYK--------DLLDDAYADLCSVLKANG 257 (724)
Q Consensus 189 ~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~---~r~ni~~~v~~~--------~~~~~k~~~L~~lLk~~~ 257 (724)
....+.+++++|||++.+....+.. |.-....+...+ ..|.+...-... ......++.+.+.++ .
T Consensus 290 a~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~ 365 (679)
T PRK05580 290 AKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--R 365 (679)
T ss_pred hhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--c
Confidence 7778999999999998877654432 110111111111 122222211000 011223344444443 3
Q ss_pred CceEEEEeccc------------------------------------------------------------ccHHHHHHH
Q 004900 258 DTCAIVYCLER------------------------------------------------------------TTCDELSAY 277 (724)
Q Consensus 258 ~~~~IIf~~sr------------------------------------------------------------~~~e~La~~ 277 (724)
+.++|||++++ ..++.+++.
T Consensus 366 g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~ 445 (679)
T PRK05580 366 GEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEE 445 (679)
T ss_pred CCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHH
Confidence 45788887653 245788888
Q ss_pred HHhC--CCceeeecCCCCH--HHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCC--C----------CHHH
Q 004900 278 LSAG--GISCAAYHAGLND--KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP--K----------SMEA 341 (724)
Q Consensus 278 L~~~--gi~v~~~H~~l~~--~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P--~----------S~~~ 341 (724)
|.+. +.++..+|+++.. +++..++++|.+|+++|||+|++++.|+|+|+|.+|+.+|.. . ....
T Consensus 446 l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~ 525 (679)
T PRK05580 446 LAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQL 525 (679)
T ss_pred HHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHH
Confidence 8886 7889999999864 678999999999999999999999999999999999765543 2 3468
Q ss_pred HHHHHcccCCCCCCCeEEEEEccccHHHHHHH
Q 004900 342 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (724)
Q Consensus 342 yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i 373 (724)
|+|++||+||.+..|.+++.....+...+..+
T Consensus 526 l~q~~GRagR~~~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 526 LTQVAGRAGRAEKPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred HHHHHhhccCCCCCCEEEEEeCCCCCHHHHHH
Confidence 99999999999999999976554443333333
No 74
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.97 E-value=6.3e-28 Score=288.09 Aligned_cols=315 Identities=17% Similarity=0.162 Sum_probs=218.7
Q ss_pred CCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHHHHHH---cC--CCeEEEEcCcHHHHHHHHHHHH-HcCCceeeec
Q 004900 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL---AK--PGIVLVVSPLIALMENQVIGLK-EKGIAGEFLS 109 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~lpal---~~--~~~vLVlsPl~aL~~qqv~~l~-~~gi~~~~l~ 109 (724)
.+.|+|.+++..++.. ..+|+...+|.|||+-..+.+- .+ ..++|||||. +|+.||..++. ++++...++.
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~ 230 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLRFSLFD 230 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEc
Confidence 5889999998887654 4789999999999986544331 22 3689999998 89999999985 5787766665
Q ss_pred ccchHHHHHHHHhhhhcCCCCccEEEeCcccccC-hhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHH
Q 004900 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (724)
Q Consensus 110 s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T-~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~ 188 (724)
........ ..-.......++++++.+.+.. +.....+.. ..+++|||||||++..-...--..|..+..+.
T Consensus 231 ~~~~~~~~----~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~----~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La 302 (956)
T PRK04914 231 EERYAEAQ----HDADNPFETEQLVICSLDFLRRNKQRLEQALA----AEWDLLVVDEAHHLVWSEEAPSREYQVVEQLA 302 (956)
T ss_pred Ccchhhhc----ccccCccccCcEEEEEHHHhhhCHHHHHHHhh----cCCCEEEEechhhhccCCCCcCHHHHHHHHHh
Confidence 44322110 0000111235788888887765 333333332 34899999999998621111123477676665
Q ss_pred hhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEee--------------------------------------------
Q 004900 189 NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK-------------------------------------------- 224 (724)
Q Consensus 189 ~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~-------------------------------------------- 224 (724)
... .-+++|||||...-..+++..|.+-+|..+.
T Consensus 303 ~~~--~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~ 380 (956)
T PRK04914 303 EVI--PGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQD 380 (956)
T ss_pred hcc--CCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccc
Confidence 443 3489999998753333333333322222110
Q ss_pred --------------------------------------ccC----CCCceEEEEEecc----------------------
Q 004900 225 --------------------------------------SSF----NRPNLFYEVRYKD---------------------- 240 (724)
Q Consensus 225 --------------------------------------~s~----~r~ni~~~v~~~~---------------------- 240 (724)
..- .-|.-.+......
T Consensus 381 ~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~ 460 (956)
T PRK04914 381 IEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLY 460 (956)
T ss_pred hhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcC
Confidence 000 0000000000000
Q ss_pred ---------------chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHH-hCCCceeeecCCCCHHHHHHHHHHh
Q 004900 241 ---------------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARSSVLDDW 304 (724)
Q Consensus 241 ---------------~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~-~~gi~v~~~H~~l~~~eR~~vl~~F 304 (724)
..+.++..|.++++...+.++||||+++..+..|++.|+ ..|+.+..|||+|+..+|..+++.|
T Consensus 461 pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F 540 (956)
T PRK04914 461 PEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYF 540 (956)
T ss_pred HHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHH
Confidence 012345556777777777899999999999999999995 5699999999999999999999999
Q ss_pred hcC--CceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEc
Q 004900 305 ISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (724)
Q Consensus 305 ~~g--~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~ 363 (724)
+++ ..+|||||+++++|+|++.+++|||||+|++++.|.||+||+||.|+.+.+.+++.
T Consensus 541 ~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~ 601 (956)
T PRK04914 541 ADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVP 601 (956)
T ss_pred hcCCCCccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 974 69999999999999999999999999999999999999999999999998766654
No 75
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=295.06 Aligned_cols=322 Identities=20% Similarity=0.248 Sum_probs=231.4
Q ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHc-CCcEEEEcCCCchHHHHHHHHHHc---C-CCeEEEEcCcHHHHHHH
Q 004900 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA---K-PGIVLVVSPLIALMENQ 94 (724)
Q Consensus 20 ~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~-g~dvlv~apTGsGKTl~~~lpal~---~-~~~vLVlsPl~aL~~qq 94 (724)
..+.+.+...++. .|+.++.+.|++++...+. ++|+++++|||+|||+++++.++. + ++++|+|+|+++|+.+.
T Consensus 14 ~~~~~~v~~i~~~-~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek 92 (766)
T COG1204 14 VKLDDRVLEILKG-DGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEK 92 (766)
T ss_pred ccccHHHHHHhcc-CChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHH
Confidence 3456677777766 6888899999998887764 599999999999999999887764 3 57999999999999999
Q ss_pred HHHHH---HcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 95 VIGLK---EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 95 v~~l~---~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
+++++ .+|+++...++....... . -..++|+++|||.+..--+.... -...+++|||||+|.+.
T Consensus 93 ~~~~~~~~~~GirV~~~TgD~~~~~~-----~----l~~~~ViVtT~EK~Dsl~R~~~~----~~~~V~lvViDEiH~l~ 159 (766)
T COG1204 93 YEEFSRLEELGIRVGISTGDYDLDDE-----R----LARYDVIVTTPEKLDSLTRKRPS----WIEEVDLVVIDEIHLLG 159 (766)
T ss_pred HHHhhhHHhcCCEEEEecCCcccchh-----h----hccCCEEEEchHHhhHhhhcCcc----hhhcccEEEEeeeeecC
Confidence 99998 689999998877653321 1 12478999999977532111000 12348999999999997
Q ss_pred cCCCCCh-HHHH-HHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCe--EeeccCCCCceEE-EEEecc------
Q 004900 172 SWGHDFR-PSYR-KLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPL--VLKSSFNRPNLFY-EVRYKD------ 240 (724)
Q Consensus 172 ~~G~dFr-p~y~-~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~--vi~~s~~r~ni~~-~v~~~~------ 240 (724)
+.- | |.+. .+..++...+.+++++||||.++. .++..+++-.... ....+..++...- .+....
T Consensus 160 d~~---RG~~lE~iv~r~~~~~~~~rivgLSATlpN~--~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~ 234 (766)
T COG1204 160 DRT---RGPVLESIVARMRRLNELIRIVGLSATLPNA--EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTW 234 (766)
T ss_pred Ccc---cCceehhHHHHHHhhCcceEEEEEeeecCCH--HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccc
Confidence 631 2 1122 245566666779999999999986 5677777655331 1111222222111 111111
Q ss_pred ---chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC---------------------C--------------
Q 004900 241 ---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------G-------------- 282 (724)
Q Consensus 241 ---~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~---------------------g-------------- 282 (724)
.....+..+.+.++ .++++||||+||+.+...|+.|... +
T Consensus 235 ~~~~~~~~~~~v~~~~~--~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~ 312 (766)
T COG1204 235 PLLIDNLALELVLESLA--EGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAEL 312 (766)
T ss_pred cccchHHHHHHHHHHHh--cCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHH
Confidence 11122333333333 3568999999999999999999730 0
Q ss_pred --CceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEE----eeC-----CCCCHHHHHHHHcccCC
Q 004900 283 --ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFN-----IPKSMEAFYQESGRAGR 351 (724)
Q Consensus 283 --i~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI----~~d-----~P~S~~~yiQr~GRAGR 351 (724)
..+.++|+||+.++|..+.+.|+.|.++|||||+.++.|||+|.-++|| .|+ .+-+..+|.|+.|||||
T Consensus 313 v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGR 392 (766)
T COG1204 313 VLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGR 392 (766)
T ss_pred HHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCC
Confidence 1246799999999999999999999999999999999999999777776 566 56689999999999999
Q ss_pred CCCC--CeEEEEE
Q 004900 352 DQLP--SKSLLYY 362 (724)
Q Consensus 352 dG~~--g~~il~~ 362 (724)
.|-. |.++++.
T Consensus 393 Pg~d~~G~~~i~~ 405 (766)
T COG1204 393 PGYDDYGEAIILA 405 (766)
T ss_pred CCcCCCCcEEEEe
Confidence 8854 4555555
No 76
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=1.7e-28 Score=279.25 Aligned_cols=292 Identities=21% Similarity=0.259 Sum_probs=215.0
Q ss_pred EEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHHHHHHHHHHHHH-cCCceeeecccchHHHHHHHHhhhhcCCCCcc
Q 004900 57 FCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (724)
Q Consensus 57 lv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~ 132 (724)
++.+|||+|||.+|+..+ +..++.+||++|+++|+.|+++.|++ +|..+..+++..+..++...+..+..+. .+
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~--~~ 78 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGE--IL 78 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCC--CC
Confidence 468999999999986433 45678999999999999999999986 6888899999998888888888877664 77
Q ss_pred EEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHH--HHHHHHHhhCCCCCEEEEeecCChhhHHH
Q 004900 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDVPILALTATAAPKVQKD 210 (724)
Q Consensus 133 il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y--~~L~~l~~~~p~~pil~LSAT~~~~v~~d 210 (724)
|+++|+..+..| ...+++|||||+|+.+.|+.++ |.| +.+..++....+.|++++|||++.+....
T Consensus 79 IVVGTrsalf~p-----------~~~l~lIIVDEeh~~sykq~~~-p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~ 146 (505)
T TIGR00595 79 VVIGTRSALFLP-----------FKNLGLIIVDEEHDSSYKQEEG-PRYHARDVAVYRAKKFNCPVVLGSATPSLESYHN 146 (505)
T ss_pred EEECChHHHcCc-----------ccCCCEEEEECCCccccccccC-CCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHH
Confidence 888888755432 3458999999999999887654 545 45777888888999999999998776654
Q ss_pred HHHhhccCCCeEeec---cCCCCceEEEEEec-----cchhhHHHHHHHHHHhcCCceEEEEeccccc------------
Q 004900 211 VMESLCLQNPLVLKS---SFNRPNLFYEVRYK-----DLLDDAYADLCSVLKANGDTCAIVYCLERTT------------ 270 (724)
Q Consensus 211 i~~~l~l~~~~vi~~---s~~r~ni~~~v~~~-----~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~------------ 270 (724)
+... .-....+.. ....|.+...-... ......++.+.+.++. ++++|||+|++..
T Consensus 147 ~~~g--~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~--g~qvLvflnrrGya~~~~C~~Cg~~ 222 (505)
T TIGR00595 147 AKQK--AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA--GEQSILFLNRRGYSKNLLCRSCGYI 222 (505)
T ss_pred HhcC--CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc--CCcEEEEEeCCcCCCeeEhhhCcCc
Confidence 4221 000000100 11122222211101 1112334444444443 4579999777643
Q ss_pred ------------------------------------------------HHHHHHHHHhC--CCceeeecCCCCHHHH--H
Q 004900 271 ------------------------------------------------CDELSAYLSAG--GISCAAYHAGLNDKAR--S 298 (724)
Q Consensus 271 ------------------------------------------------~e~La~~L~~~--gi~v~~~H~~l~~~eR--~ 298 (724)
++.+++.|.+. +.++..+|++++...+ .
T Consensus 223 ~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~ 302 (505)
T TIGR00595 223 LCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHE 302 (505)
T ss_pred cCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHH
Confidence 58889999886 7889999999987665 8
Q ss_pred HHHHHhhcCCceEEEEccccccccCCCCcceEEeeCC------CC------CHHHHHHHHcccCCCCCCCeEEEEE-ccc
Q 004900 299 SVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI------PK------SMEAFYQESGRAGRDQLPSKSLLYY-GMD 365 (724)
Q Consensus 299 ~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~------P~------S~~~yiQr~GRAGRdG~~g~~il~~-~~~ 365 (724)
.+++.|.+|+.+|||+|++++.|+|+|+|++|+..|. |. ....|+|.+|||||.+..|.+++.. .++
T Consensus 303 ~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt~~p~ 382 (505)
T TIGR00595 303 ALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEeCCCC
Confidence 8999999999999999999999999999999864443 31 3578999999999999999988654 444
Q ss_pred c
Q 004900 366 D 366 (724)
Q Consensus 366 D 366 (724)
+
T Consensus 383 ~ 383 (505)
T TIGR00595 383 H 383 (505)
T ss_pred C
Confidence 4
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.96 E-value=5.2e-28 Score=278.82 Aligned_cols=325 Identities=20% Similarity=0.215 Sum_probs=237.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++.+|+. +++.|..+...+..|+ ++.|+||+|||++|.+|++. .+..+.|++|+..|+.|..+.+..
T Consensus 45 vrEa~~R~lg~~-p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 45 VREASKRVLGMR-PFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred HHHHHHHHhCCC-ccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 456677788876 6788888877777765 99999999999999999853 466799999999999998888776
Q ss_pred --cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH---HhhhhcCCccEEEEccccccccC--
Q 004900 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSW-- 173 (724)
Q Consensus 101 --~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L---~~~~~~~~l~lIVIDEAH~l~~~-- 173 (724)
+|+.+.++.++.....+...+ ..+|+|+||-.+.-..+...+ ........+.++||||+|.++-.
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~y--------~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDea 193 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREAY--------ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEA 193 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhh
Confidence 578888888877765554433 268999999866433222221 11234566899999999998620
Q ss_pred -------C----C------------------CChH------------HHHHHHHH----------------------Hhh
Q 004900 174 -------G----H------------------DFRP------------SYRKLSSL----------------------RNY 190 (724)
Q Consensus 174 -------G----~------------------dFrp------------~y~~L~~l----------------------~~~ 190 (724)
| . +|.- ....+..+ +..
T Consensus 194 RtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~ 273 (745)
T TIGR00963 194 RTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAK 273 (745)
T ss_pred hhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHH
Confidence 1 0 1110 00011110 000
Q ss_pred --C------------------------C----------------C----------------------CCEEEEeecCChh
Q 004900 191 --L------------------------P----------------D----------------------VPILALTATAAPK 206 (724)
Q Consensus 191 --~------------------------p----------------~----------------------~pil~LSAT~~~~ 206 (724)
+ + + ..+.+||+|+..+
T Consensus 274 ~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 353 (745)
T TIGR00963 274 ELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTE 353 (745)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHH
Confidence 0 0 0 0156777787543
Q ss_pred hHHHHHHhhccCCCeEeeccCCCCceEEEEE---eccchhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhC
Q 004900 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (724)
Q Consensus 207 v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~---~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~ 281 (724)
...+.+..++ .++..+.++|.+..... +.. ..+++..+.+.+.. ..+.++||||+|+..++.++..|.+.
T Consensus 354 -~~E~~~iY~l---~vv~IPtnkp~~R~d~~d~i~~t-~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~ 428 (745)
T TIGR00963 354 -EEEFEKIYNL---EVVVVPTNRPVIRKDLSDLVYKT-EEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER 428 (745)
T ss_pred -HHHHHHHhCC---CEEEeCCCCCeeeeeCCCeEEcC-HHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc
Confidence 2344444433 45556777776654321 222 24566666655532 35789999999999999999999999
Q ss_pred CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCC-------cceEEeeCCCCCHHHHHHHHcccCCCCC
Q 004900 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD-------VRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (724)
Q Consensus 282 gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~-------V~~VI~~d~P~S~~~yiQr~GRAGRdG~ 354 (724)
|+++..+||+ +.+|+..+..|..+...|+|||+.+|||+|++. .-+||+++.|.|...|.|+.||+||.|.
T Consensus 429 gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 429 GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGD 506 (745)
T ss_pred CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCC
Confidence 9999999998 788999999999999999999999999999998 4599999999999999999999999999
Q ss_pred CCeEEEEEccccHH
Q 004900 355 PSKSLLYYGMDDRR 368 (724)
Q Consensus 355 ~g~~il~~~~~D~~ 368 (724)
+|.+..|++.+|.-
T Consensus 507 ~G~s~~~ls~eD~l 520 (745)
T TIGR00963 507 PGSSRFFLSLEDNL 520 (745)
T ss_pred CcceEEEEeccHHH
Confidence 99999999988754
No 78
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.7e-30 Score=257.20 Aligned_cols=297 Identities=17% Similarity=0.280 Sum_probs=219.8
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCc
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl 87 (724)
+..|+++.+.+++++++-. -||++|...|.++|+...-|.|+++.|..|.|||.+|.+..++. .-.+||+|.|
T Consensus 41 ssgfrdfllkpellraivd-cgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmcht 119 (387)
T KOG0329|consen 41 SSGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHT 119 (387)
T ss_pred ccchhhhhcCHHHHHHHHh-ccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEecc
Confidence 6789999999999999999 59999999999999999999999999999999999999998874 2368999999
Q ss_pred HHHHHHHHHHHHHc-----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH--hhhhcCCcc
Q 004900 88 IALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLN 160 (724)
Q Consensus 88 ~aL~~qqv~~l~~~-----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~--~~~~~~~l~ 160 (724)
|+|+-|...+..++ ++++.++.++...+.....+.. . ..| +++|||++..|. +..+...+.
T Consensus 120 relafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~----~--Phi------vVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 120 RELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKN----C--PHI------VVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhC----C--CeE------EEcCcHHHHHHHHhccCchhhcc
Confidence 99999988877765 5677777777776655544432 2 223 556777766663 445566789
Q ss_pred EEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeecc-CCCCce----EE
Q 004900 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNL----FY 234 (724)
Q Consensus 161 lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s-~~r~ni----~~ 234 (724)
.+|+|||+.+++|- |.|.+ +.++-+.-| ..+++.+|||++.+++.-..+. +++|..+... ...-.+ .|
T Consensus 188 hFvlDEcdkmle~l-DMrRD---vQEifr~tp~~KQvmmfsatlskeiRpvC~kF--mQdPmEi~vDdE~KLtLHGLqQ~ 261 (387)
T KOG0329|consen 188 HFVLDECDKMLEQL-DMRRD---VQEIFRMTPHEKQVMMFSATLSKEIRPVCHKF--MQDPMEIFVDDEAKLTLHGLQQY 261 (387)
T ss_pred eeehhhHHHHHHHH-HHHHH---HHHHhhcCcccceeeeeeeecchhhHHHHHhh--hcCchhhhccchhhhhhhhHHHH
Confidence 99999999998853 34444 444444334 7899999999999987644333 4566533221 111111 11
Q ss_pred EEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEE
Q 004900 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (724)
Q Consensus 235 ~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVA 314 (724)
.+..++ .++-..+.++|....-+.++||+.+... | + | +-+ +||
T Consensus 262 YvkLke--~eKNrkl~dLLd~LeFNQVvIFvKsv~R-------l--------------~----------f---~kr-~va 304 (387)
T KOG0329|consen 262 YVKLKE--NEKNRKLNDLLDVLEFNQVVIFVKSVQR-------L--------------S----------F---QKR-LVA 304 (387)
T ss_pred HHhhhh--hhhhhhhhhhhhhhhhcceeEeeehhhh-------h--------------h----------h---hhh-hHH
Confidence 111111 2333444555554445679999977654 1 0 2 123 899
Q ss_pred ccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEcccc
Q 004900 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (724)
Q Consensus 315 T~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D 366 (724)
|+.||+|+|+..|+.||+||+|.+..+|+||+|||||.|..|.++.|.+..+
T Consensus 305 t~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 305 TDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred hhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 9999999999999999999999999999999999999999999999987544
No 79
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=2e-28 Score=278.98 Aligned_cols=313 Identities=23% Similarity=0.342 Sum_probs=211.6
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc-----CCCeEEEEcCcHHHHHHHHHHHHHcCCcee--ee
Q 004900 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAGE--FL 108 (724)
Q Consensus 36 ~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~-----~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~--~l 108 (724)
.-.+|.||.+.+..++ |+++||++|||+|||+++...++. ..+++|+++|++-|+.||...+..+|++-. ..
T Consensus 60 ~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T~~ 138 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVTGQ 138 (746)
T ss_pred cccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccceee
Confidence 4579999999999999 999999999999999988776663 368999999999999999988888876522 22
Q ss_pred ccc-chHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHH-H
Q 004900 109 SST-QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS-S 186 (724)
Q Consensus 109 ~s~-~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~-~ 186 (724)
.++ .....+..++. ..+++++||.++...-.-.... ....+.++||||||+-.. .| .|..+- .
T Consensus 139 l~~~~~~~~r~~i~~-------s~~vff~TpQil~ndL~~~~~~---~ls~fs~iv~DE~Hra~k-n~----~Y~~Vmr~ 203 (746)
T KOG0354|consen 139 LGDTVPRSNRGEIVA-------SKRVFFRTPQILENDLKSGLHD---ELSDFSLIVFDECHRTSK-NH----PYNNIMRE 203 (746)
T ss_pred ccCccCCCchhhhhc-------ccceEEeChHhhhhhccccccc---ccceEEEEEEcccccccc-cc----cHHHHHHH
Confidence 222 22333332322 3689999998876532111111 135689999999999764 23 354443 3
Q ss_pred HHhhC-CCCCEEEEeecCChhhHHH--HHHhhccC-----------------CCeEeec---------------------
Q 004900 187 LRNYL-PDVPILALTATAAPKVQKD--VMESLCLQ-----------------NPLVLKS--------------------- 225 (724)
Q Consensus 187 l~~~~-p~~pil~LSAT~~~~v~~d--i~~~l~l~-----------------~~~vi~~--------------------- 225 (724)
+.... ...++++||||+......- ++..|... ....+..
T Consensus 204 ~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l 283 (746)
T KOG0354|consen 204 YLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLL 283 (746)
T ss_pred HHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHH
Confidence 33322 2349999999988543210 01111100 0000000
Q ss_pred ----------------cCCC----------Cce----E------------------EEEEe-------------------
Q 004900 226 ----------------SFNR----------PNL----F------------------YEVRY------------------- 238 (724)
Q Consensus 226 ----------------s~~r----------~ni----~------------------~~v~~------------------- 238 (724)
.+.. ++. . ..++.
T Consensus 284 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~ 363 (746)
T KOG0354|consen 284 QQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKY 363 (746)
T ss_pred HHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHH
Confidence 0000 000 0 00000
Q ss_pred --------------------------ccchhhHHHHHHHHHH----hcCCceEEEEecccccHHHHHHHHHh---CCCce
Q 004900 239 --------------------------KDLLDDAYADLCSVLK----ANGDTCAIVYCLERTTCDELSAYLSA---GGISC 285 (724)
Q Consensus 239 --------------------------~~~~~~k~~~L~~lLk----~~~~~~~IIf~~sr~~~e~La~~L~~---~gi~v 285 (724)
......+++.+.+++. ..+..++||||.+|..|+.|-.+|.+ .|++.
T Consensus 364 ~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~ 443 (746)
T KOG0354|consen 364 LKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKA 443 (746)
T ss_pred HHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccc
Confidence 0000123333444332 23567899999999999999999983 24444
Q ss_pred eee--------cCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCe
Q 004900 286 AAY--------HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (724)
Q Consensus 286 ~~~--------H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~ 357 (724)
..+ ..+|++.++.+++++|++|+++|||||++.++|+|++.|++||-||.-.|+...+||.|| ||. ..|.
T Consensus 444 ~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~ 521 (746)
T KOG0354|consen 444 EIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSK 521 (746)
T ss_pred ceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCe
Confidence 333 348999999999999999999999999999999999999999999999999999999999 998 5788
Q ss_pred EEEEEcccc
Q 004900 358 SLLYYGMDD 366 (724)
Q Consensus 358 ~il~~~~~D 366 (724)
|++++....
T Consensus 522 ~vll~t~~~ 530 (746)
T KOG0354|consen 522 CVLLTTGSE 530 (746)
T ss_pred EEEEEcchh
Confidence 888888433
No 80
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=2.3e-26 Score=258.83 Aligned_cols=327 Identities=20% Similarity=0.250 Sum_probs=261.6
Q ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CcEEEEcCCCchHHHHHHHHHH---cCCCeEEEEc
Q 004900 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVS 85 (724)
Q Consensus 15 ~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g------~dvlv~apTGsGKTl~~~lpal---~~~~~vLVls 85 (724)
....++....++...+...+.|. ++..|+.++..|... .+-++++.-|||||+++++.++ ..+..+...+
T Consensus 240 ~~~~~~~~~~~l~~~~~~~LPF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMA 318 (677)
T COG1200 240 RSGIPLPANGELLAKFLAALPFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMA 318 (677)
T ss_pred ccCCCCCccHHHHHHHHHhCCCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEec
Confidence 33445666677777887778997 999999999999854 2458999999999998877655 5788999999
Q ss_pred CcHHHHHHHHHHHHH----cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccE
Q 004900 86 PLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (724)
Q Consensus 86 Pl~aL~~qqv~~l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~l 161 (724)
||--|+.|.++.+.+ +|+.+.++.+....+.+..+...+.+|. ++++++|.-++.- .....++.+
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~--~~ivVGTHALiQd---------~V~F~~LgL 387 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGE--IDIVVGTHALIQD---------KVEFHNLGL 387 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCC--CCEEEEcchhhhc---------ceeecceeE
Confidence 999999999988776 5889999999999999999999999986 8898888876543 233456899
Q ss_pred EEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCC-eEeeccCCCCceEEEEEec
Q 004900 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNP-LVLKSSFNRPNLFYEVRYK 239 (724)
Q Consensus 162 IVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~-~vi~~s~~r~ni~~~v~~~ 239 (724)
+||||=|+.. . .+=..++..-. ..-++.||||+-|.... +...+.-+. .+-..+..|..|.-.+...
T Consensus 388 VIiDEQHRFG---V------~QR~~L~~KG~~~Ph~LvMTATPIPRTLA--lt~fgDldvS~IdElP~GRkpI~T~~i~~ 456 (677)
T COG1200 388 VIIDEQHRFG---V------HQRLALREKGEQNPHVLVMTATPIPRTLA--LTAFGDLDVSIIDELPPGRKPITTVVIPH 456 (677)
T ss_pred EEEecccccc---H------HHHHHHHHhCCCCCcEEEEeCCCchHHHH--HHHhccccchhhccCCCCCCceEEEEecc
Confidence 9999999843 2 12223444444 45689999999999876 444443333 3444567777777777776
Q ss_pred cchhhHHHHHHHHHHhcCCceEEEEecccc--------cHHHHHHHHHhC--CCceeeecCCCCHHHHHHHHHHhhcCCc
Q 004900 240 DLLDDAYADLCSVLKANGDTCAIVYCLERT--------TCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRK 309 (724)
Q Consensus 240 ~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~--------~~e~La~~L~~~--gi~v~~~H~~l~~~eR~~vl~~F~~g~~ 309 (724)
...+..++.+..-+. .+.++.|.|+-++ .++.+++.|+.. ++.+..+||.|++.++.+++++|++|++
T Consensus 457 ~~~~~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~ 534 (677)
T COG1200 457 ERRPEVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEI 534 (677)
T ss_pred ccHHHHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCC
Confidence 666666776666665 4568999998664 456777777754 5678999999999999999999999999
Q ss_pred eEEEEccccccccCCCCcceEEeeCCCC-CHHHHHHHHcccCCCCCCCeEEEEEcccc
Q 004900 310 QVVVATVAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (724)
Q Consensus 310 ~VLVAT~a~g~GIDip~V~~VI~~d~P~-S~~~yiQr~GRAGRdG~~g~~il~~~~~D 366 (724)
+|||||.+.+.|||+|+..++|..+.-. .+.++-|-.||+||.+..+.|+++|.+..
T Consensus 535 ~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 535 DILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred cEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCcceEEEEEeCCCC
Confidence 9999999999999999999999988653 78999999999999999999999998765
No 81
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=4.6e-27 Score=264.05 Aligned_cols=295 Identities=20% Similarity=0.269 Sum_probs=207.3
Q ss_pred CCCCHHHHHHHHHHHc----CCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCce---eeec
Q 004900 37 AQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAG---EFLS 109 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~----g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~---~~l~ 109 (724)
-.+|++|++++.++.+ ++..++++|||+|||++++..+-.....+|||+|+.+|+.||.+.+....... ..+.
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~~~ 114 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGIYG 114 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccceec
Confidence 4599999999999998 89999999999999999887777666669999999999999988777643321 1111
Q ss_pred ccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHh
Q 004900 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (724)
Q Consensus 110 s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~ 189 (724)
++. ....+ ..|.++|...+..... + .....+.+++|||||||++... .|..+.....
T Consensus 115 ~~~------------~~~~~-~~i~vat~qtl~~~~~---l-~~~~~~~~~liI~DE~Hh~~a~------~~~~~~~~~~ 171 (442)
T COG1061 115 GGE------------KELEP-AKVTVATVQTLARRQL---L-DEFLGNEFGLIIFDEVHHLPAP------SYRRILELLS 171 (442)
T ss_pred Cce------------eccCC-CcEEEEEhHHHhhhhh---h-hhhcccccCEEEEEccccCCcH------HHHHHHHhhh
Confidence 111 00011 3477777766655321 1 1122235899999999998763 2444433332
Q ss_pred hCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeec--------cCCCCceEEEEEeccch-------------------
Q 004900 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS--------SFNRPNLFYEVRYKDLL------------------- 242 (724)
Q Consensus 190 ~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~--------s~~r~ni~~~v~~~~~~------------------- 242 (724)
. ..++++||||+.......+.....+..+.++.. ++-.|..++.+......
T Consensus 172 ~--~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 172 A--AYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred c--ccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 1 223999999987544222222222333444432 22233333333321100
Q ss_pred -----------------hhHHHHHHHHHHhc-CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHh
Q 004900 243 -----------------DDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW 304 (724)
Q Consensus 243 -----------------~~k~~~L~~lLk~~-~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F 304 (724)
..+...+...+..+ .+.+++|||.+..+++.++..|...|+ +..+.+..+..+|..+++.|
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~~f 328 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILERF 328 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHHHH
Confidence 01122222333333 366899999999999999999998888 88999999999999999999
Q ss_pred hcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCC-CCCCCe
Q 004900 305 ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR-DQLPSK 357 (724)
Q Consensus 305 ~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGR-dG~~g~ 357 (724)
+.|++++||++.++..|+|+|+++++|......|...|+||+||.-| +..++.
T Consensus 329 r~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~ 382 (442)
T COG1061 329 RTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKED 382 (442)
T ss_pred HcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCc
Confidence 99999999999999999999999999999999999999999999999 443443
No 82
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=2.3e-26 Score=264.29 Aligned_cols=338 Identities=20% Similarity=0.244 Sum_probs=237.8
Q ss_pred HHHHHHH-HHHcCCCCCCHHHHHHHHHHHcC-CcEEEEcCCCchHHHHHHHHHHc-------------CCCeEEEEcCcH
Q 004900 24 EALVKLL-RWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-------------KPGIVLVVSPLI 88 (724)
Q Consensus 24 ~~l~~~L-~~~fG~~~lr~~Q~eaI~ail~g-~dvlv~apTGsGKTl~~~lpal~-------------~~~~vLVlsPl~ 88 (724)
..+.... +..|+|..|+.+|.++++.+.+. .++|++||||+|||..|+|.+|. ...++|+|+|++
T Consensus 95 sdld~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmK 174 (1230)
T KOG0952|consen 95 SDLDDVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMK 174 (1230)
T ss_pred EecchhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechH
Confidence 3444455 47889999999999999998865 69999999999999999988773 245899999999
Q ss_pred HHHHHHHHHHHH----cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCccccc--ChhHHHHHHhhhhcCCccEE
Q 004900 89 ALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA--TPGFMSKLKKIHSRGLLNLV 162 (724)
Q Consensus 89 aL~~qqv~~l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~--T~~~l~~L~~~~~~~~l~lI 162 (724)
+|+.+.++.+.+ +|+.+.-+.+.+....-. +. ..+|+++|||... |...... ..-...+.+|
T Consensus 175 ALa~Em~~~~~kkl~~~gi~v~ELTGD~ql~~te-i~--------~tqiiVTTPEKwDvvTRk~~~d---~~l~~~V~Lv 242 (1230)
T KOG0952|consen 175 ALAAEMVDKFSKKLAPLGISVRELTGDTQLTKTE-IA--------DTQIIVTTPEKWDVVTRKSVGD---SALFSLVRLV 242 (1230)
T ss_pred HHHHHHHHHHhhhcccccceEEEecCcchhhHHH-HH--------hcCEEEecccceeeeeeeeccc---hhhhhheeeE
Confidence 999999988766 588888888776554332 22 3899999999542 2111100 1112338999
Q ss_pred EEcccccccc-CCCCChHHHHHHHHHH-hhCCCCCEEEEeecCChhhHHHHHHhhccCCC--eEeeccCCCCc-eEEEEE
Q 004900 163 AIDEAHCISS-WGHDFRPSYRKLSSLR-NYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRPN-LFYEVR 237 (724)
Q Consensus 163 VIDEAH~l~~-~G~dFrp~y~~L~~l~-~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~--~vi~~s~~r~n-i~~~v~ 237 (724)
||||+|.+-+ .|.-......++.++. .....+.+++||||+++- .|+..+|+...+ ........||. +...+.
T Consensus 243 iIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~--eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~i 320 (1230)
T KOG0952|consen 243 IIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY--EDVARFLRVNPYAGLFSFDQRYRPVPLTQGFI 320 (1230)
T ss_pred EeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH--HHHHHHhcCCCccceeeecccccccceeeeEE
Confidence 9999999865 3322111111111111 223478899999999976 577888877522 22222222332 222221
Q ss_pred e---c-------cchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC----CC-------------------c
Q 004900 238 Y---K-------DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----GI-------------------S 284 (724)
Q Consensus 238 ~---~-------~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~----gi-------------------~ 284 (724)
- + ......++.+.++++. +.+++|||.+|..+...|+.|.+. |. .
T Consensus 321 G~k~~~~~~~~~~~d~~~~~kv~e~~~~--g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g 398 (1230)
T KOG0952|consen 321 GIKGKKNRQQKKNIDEVCYDKVVEFLQE--GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQG 398 (1230)
T ss_pred eeecccchhhhhhHHHHHHHHHHHHHHc--CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhh
Confidence 1 1 0011234455556654 568999999999999999999753 11 2
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEE----eeCCCC------CHHHHHHHHcccCCCC-
Q 004900 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNIPK------SMEAFYQESGRAGRDQ- 353 (724)
Q Consensus 285 v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI----~~d~P~------S~~~yiQr~GRAGRdG- 353 (724)
...+|+||.-.+|..+.+.|..|.++||+||..++.|+|+|+--++| .||.-+ +.-+.+|..|||||.+
T Consensus 399 ~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqF 478 (1230)
T KOG0952|consen 399 MGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQF 478 (1230)
T ss_pred hhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCC
Confidence 46799999999999999999999999999999999999999655555 233322 5778999999999964
Q ss_pred -CCCeEEEEEccccHHHHHHHHHhc
Q 004900 354 -LPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 354 -~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
..|.++++.+.+-...+..++...
T Consensus 479 d~~G~giIiTt~dkl~~Y~sLl~~~ 503 (1230)
T KOG0952|consen 479 DSSGEGIIITTRDKLDHYESLLTGQ 503 (1230)
T ss_pred CCCceEEEEecccHHHHHHHHHcCC
Confidence 568888888887777777777644
No 83
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=7.3e-26 Score=266.90 Aligned_cols=324 Identities=20% Similarity=0.191 Sum_probs=264.1
Q ss_pred cCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CcEEEEcCCCchHHHHHHH---HHHcCCCeEEEEcC
Q 004900 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSP 86 (724)
Q Consensus 16 ~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g------~dvlv~apTGsGKTl~~~l---pal~~~~~vLVlsP 86 (724)
..-.++...++...+...|+|. -+|-|..||+.+.+. .|-++|+--|.|||-+++= .++..++.|.|++|
T Consensus 573 ~G~af~~d~~~q~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVP 651 (1139)
T COG1197 573 KGFAFPPDTEWQEEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVP 651 (1139)
T ss_pred cCCCCCCChHHHHHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcc
Confidence 3445777889999999999998 589999999999743 5889999999999988764 45678999999999
Q ss_pred cHHHHHHHHHHHHH----cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEE
Q 004900 87 LIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (724)
Q Consensus 87 l~aL~~qqv~~l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lI 162 (724)
|.-|++|.++.|+. ++|++..++.-.+.++...+...+..|. ++|+++|.-++... .....|+++
T Consensus 652 TTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~--vDIvIGTHrLL~kd---------v~FkdLGLl 720 (1139)
T COG1197 652 TTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGK--VDIVIGTHRLLSKD---------VKFKDLGLL 720 (1139)
T ss_pred cHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCC--ccEEEechHhhCCC---------cEEecCCeE
Confidence 99999999988876 5788899999999999999999999996 99999998766543 234558999
Q ss_pred EEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc-CCCCceEEEEEeccc
Q 004900 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRYKDL 241 (724)
Q Consensus 163 VIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s-~~r~ni~~~v~~~~~ 241 (724)
||||-|+.. . ..=..++....++-++.||||+-|.++. +...|+++--++..+ .+|-.+.-.|...+.
T Consensus 721 IIDEEqRFG---V------k~KEkLK~Lr~~VDvLTLSATPIPRTL~--Msm~GiRdlSvI~TPP~~R~pV~T~V~~~d~ 789 (1139)
T COG1197 721 IIDEEQRFG---V------KHKEKLKELRANVDVLTLSATPIPRTLN--MSLSGIRDLSVIATPPEDRLPVKTFVSEYDD 789 (1139)
T ss_pred EEechhhcC---c------cHHHHHHHHhccCcEEEeeCCCCcchHH--HHHhcchhhhhccCCCCCCcceEEEEecCCh
Confidence 999999843 2 2233445555689999999999999988 777788876666554 456556555555442
Q ss_pred hhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC--CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc
Q 004900 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (724)
Q Consensus 242 ~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~--gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g 319 (724)
. -..+.+.+-+. .++++...+|.++..+.+++.|++. ..++.+-||.|+..+-+.++..|.+|+.+|||||.+.+
T Consensus 790 ~-~ireAI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIE 866 (1139)
T COG1197 790 L-LIREAILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIE 866 (1139)
T ss_pred H-HHHHHHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeee
Confidence 1 12222332222 3567777789999999999999986 56788999999999999999999999999999999999
Q ss_pred cccCCCCcceEEeeCCCC-CHHHHHHHHcccCCCCCCCeEEEEEccc
Q 004900 320 MGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (724)
Q Consensus 320 ~GIDip~V~~VI~~d~P~-S~~~yiQr~GRAGRdG~~g~~il~~~~~ 365 (724)
.|||+|+++.+|..+... .+.+++|-.||+||..+.++|+++|.+.
T Consensus 867 tGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 867 TGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred cCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 999999999999777654 6999999999999999999999999764
No 84
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.95 E-value=1.5e-26 Score=279.91 Aligned_cols=298 Identities=18% Similarity=0.232 Sum_probs=196.6
Q ss_pred HHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc-C---C--CeEEEEcCc----HHHHHHHHHHHHH-cCCceeeecc
Q 004900 42 KQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-K---P--GIVLVVSPL----IALMENQVIGLKE-KGIAGEFLSS 110 (724)
Q Consensus 42 ~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~-~---~--~~vLVlsPl----~aL~~qqv~~l~~-~gi~~~~l~s 110 (724)
.-.+++.++.+++.++++++||+|||. ++|.+. . + +.+++.-|. ++|+.+..+++.. +|-.+..-.
T Consensus 78 ~r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v- 154 (1294)
T PRK11131 78 KKQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV- 154 (1294)
T ss_pred HHHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee-
Confidence 334566666666777888999999999 788543 1 2 234444574 5777777766654 333221100
Q ss_pred cchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccc-cccCCCCChHHHHHHHHHHh
Q 004900 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRN 189 (724)
Q Consensus 111 ~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~-l~~~G~dFrp~y~~L~~l~~ 189 (724)
..... .....+|+|+||.++.. .+........+++|||||||. ..+. ||... .|..+..
T Consensus 155 --------rf~~~---~s~~t~I~v~TpG~LL~-----~l~~d~~Ls~~~~IIIDEAHERsLn~--DfLLg--~Lk~lL~ 214 (1294)
T PRK11131 155 --------RFNDQ---VSDNTMVKLMTDGILLA-----EIQQDRLLMQYDTIIIDEAHERSLNI--DFILG--YLKELLP 214 (1294)
T ss_pred --------cCccc---cCCCCCEEEEChHHHHH-----HHhcCCccccCcEEEecCcccccccc--chHHH--HHHHhhh
Confidence 00001 11246777777765432 222223356799999999994 5553 45443 2344444
Q ss_pred hCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCC-ceEEEEEeccc---hhhHHHHHHHHHH---hcCCceEE
Q 004900 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCAI 262 (724)
Q Consensus 190 ~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~-ni~~~v~~~~~---~~~k~~~L~~lLk---~~~~~~~I 262 (724)
..|+.++|++|||+..+ .+.+.++ ..|++...+...| .++|....... ..+.+..+...+. ..+.+.+|
T Consensus 215 ~rpdlKvILmSATid~e---~fs~~F~-~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdIL 290 (1294)
T PRK11131 215 RRPDLKVIITSATIDPE---RFSRHFN-NAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDIL 290 (1294)
T ss_pred cCCCceEEEeeCCCCHH---HHHHHcC-CCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 45678999999999754 3444432 3444332222222 22232211110 1223333333322 23456799
Q ss_pred EEecccccHHHHHHHHHhCCCc---eeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCC----
Q 004900 263 VYCLERTTCDELSAYLSAGGIS---CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI---- 335 (724)
Q Consensus 263 If~~sr~~~e~La~~L~~~gi~---v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~---- 335 (724)
|||++..+++.+++.|...++. +..+||+|++++|..+++. .|..+|||||+++++|||+|+|++||+++.
T Consensus 291 VFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~ 368 (1294)
T PRK11131 291 IFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARIS 368 (1294)
T ss_pred EEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccc
Confidence 9999999999999999987765 6789999999999999876 578899999999999999999999999863
Q ss_pred -----------C---CCHHHHHHHHcccCCCCCCCeEEEEEccccHHH
Q 004900 336 -----------P---KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (724)
Q Consensus 336 -----------P---~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~ 369 (724)
| -|..+|.||+|||||. .+|.|+.+|+.+|...
T Consensus 369 ~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 369 RYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLS 415 (1294)
T ss_pred ccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHh
Confidence 3 4668999999999999 6999999999877653
No 85
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.8e-24 Score=251.66 Aligned_cols=326 Identities=21% Similarity=0.213 Sum_probs=236.8
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH-
Q 004900 25 ALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE- 100 (724)
Q Consensus 25 ~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~- 100 (724)
.+..+.++.+|+. +++.|.-+.-.+..|+ |+.|.||.|||++..+|++. .+..+-|++|+--|+.+.++.+..
T Consensus 68 ~vrEa~~R~~g~~-~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~ 144 (796)
T PRK12906 68 VAREGAKRVLGLR-PFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGEL 144 (796)
T ss_pred HHHHHHHHHhCCC-CchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHH
Confidence 3456777888876 6788888766666666 99999999999999998874 578899999999999998887655
Q ss_pred ---cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH---HhhhhcCCccEEEEccccccccC-
Q 004900 101 ---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSW- 173 (724)
Q Consensus 101 ---~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L---~~~~~~~~l~lIVIDEAH~l~~~- 173 (724)
+|+.+.++.+......+...+. .+|.|+|.--+.-..+...+ ....-.+.+.+.||||+|.++=.
T Consensus 145 ~~~LGl~vg~i~~~~~~~~r~~~y~--------~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDe 216 (796)
T PRK12906 145 YRWLGLTVGLNLNSMSPDEKRAAYN--------CDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDE 216 (796)
T ss_pred HHhcCCeEEEeCCCCCHHHHHHHhc--------CCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeecc
Confidence 6999999988887777766553 68889987755433222222 11112345788899999887510
Q ss_pred --------C--CCChHHHHHHHHH--------------------------------------------------------
Q 004900 174 --------G--HDFRPSYRKLSSL-------------------------------------------------------- 187 (724)
Q Consensus 174 --------G--~dFrp~y~~L~~l-------------------------------------------------------- 187 (724)
| ......|..+..+
T Consensus 217 artPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~ 296 (796)
T PRK12906 217 ARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTA 296 (796)
T ss_pred CCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhh
Confidence 0 0000011110000
Q ss_pred ---------Hhh--C------------------------C----------------C----------------------C
Q 004900 188 ---------RNY--L------------------------P----------------D----------------------V 194 (724)
Q Consensus 188 ---------~~~--~------------------------p----------------~----------------------~ 194 (724)
+.. + + + .
T Consensus 297 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~ 376 (796)
T PRK12906 297 LAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYK 376 (796)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcc
Confidence 000 0 0 0 0
Q ss_pred CEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEe--ccchhhHHHHHHHHHHh--cCCceEEEEeccccc
Q 004900 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTT 270 (724)
Q Consensus 195 pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~--~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~ 270 (724)
.+.+||+|+..+ ..++.+..++ .++..+.++|.+...... ......++..+.+.+.. ..+.|+||||+|+..
T Consensus 377 kl~GmTGTa~~e-~~Ef~~iY~l---~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~ 452 (796)
T PRK12906 377 KLSGMTGTAKTE-EEEFREIYNM---EVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIES 452 (796)
T ss_pred hhhccCCCCHHH-HHHHHHHhCC---CEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHH
Confidence 155677776533 2344443333 355566777766533221 11235677777777754 367899999999999
Q ss_pred HHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCC---Ccc-----eEEeeCCCCCHHHH
Q 004900 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK---DVR-----LVCHFNIPKSMEAF 342 (724)
Q Consensus 271 ~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip---~V~-----~VI~~d~P~S~~~y 342 (724)
++.++..|.+.|+++..+||++...++..+.+.+..|. |+|||+.+|||+|++ +|. +||+++.|.|...|
T Consensus 453 se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~ 530 (796)
T PRK12906 453 SERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRID 530 (796)
T ss_pred HHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHH
Confidence 99999999999999999999999888888888887777 999999999999994 899 99999999999999
Q ss_pred HHHHcccCCCCCCCeEEEEEccccH
Q 004900 343 YQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 343 iQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
.|+.||+||.|.+|.+..|++.+|-
T Consensus 531 ~Ql~GRtGRqG~~G~s~~~~sleD~ 555 (796)
T PRK12906 531 NQLRGRSGRQGDPGSSRFYLSLEDD 555 (796)
T ss_pred HHHhhhhccCCCCcceEEEEeccch
Confidence 9999999999999999999998764
No 86
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.93 E-value=7.5e-25 Score=266.09 Aligned_cols=300 Identities=19% Similarity=0.221 Sum_probs=196.5
Q ss_pred HHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCcHHHHHHHHHHHHH-cCCceeeecccchHHH
Q 004900 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (724)
Q Consensus 44 ~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~ 116 (724)
.+.+.++.+++.++++|+||+|||. ++|.+.. .+.+++.-|.+--+.....++.. +|.+.....+-....
T Consensus 73 ~~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~- 149 (1283)
T TIGR01967 73 EDIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRF- 149 (1283)
T ss_pred HHHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcC-
Confidence 4566666667778899999999999 6776531 23555666888777666666544 555432221110000
Q ss_pred HHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccc-cccCCCCChHHHHHHHHHHhhCCCCC
Q 004900 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVP 195 (724)
Q Consensus 117 ~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~-l~~~G~dFrp~y~~L~~l~~~~p~~p 195 (724)
+. ......+|.|+|+.++. ..+........+++|||||||. ..+. ||--.| +..+....|+.+
T Consensus 150 -----~~--~~s~~T~I~~~TdGiLL-----r~l~~d~~L~~~~~IIIDEaHERsL~~--D~LL~l--Lk~il~~rpdLK 213 (1283)
T TIGR01967 150 -----HD--QVSSNTLVKLMTDGILL-----AETQQDRFLSRYDTIIIDEAHERSLNI--DFLLGY--LKQLLPRRPDLK 213 (1283)
T ss_pred -----Cc--ccCCCceeeeccccHHH-----HHhhhCcccccCcEEEEcCcchhhccc--hhHHHH--HHHHHhhCCCCe
Confidence 00 01124667777776543 2233333456799999999994 5553 343322 344555567889
Q ss_pred EEEEeecCChhhHHHHHHhhccCCCeEeeccCCCC-ceEEEEEeccc---hhhHHHHHHHHHH---hcCCceEEEEeccc
Q 004900 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDL---LDDAYADLCSVLK---ANGDTCAIVYCLER 268 (724)
Q Consensus 196 il~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~-ni~~~v~~~~~---~~~k~~~L~~lLk---~~~~~~~IIf~~sr 268 (724)
+|+||||+... .+.+.++ ..|++...+..-| .++|....... ..+....+...+. ....+.+|||+++.
T Consensus 214 lIlmSATld~~---~fa~~F~-~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~ 289 (1283)
T TIGR01967 214 IIITSATIDPE---RFSRHFN-NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGE 289 (1283)
T ss_pred EEEEeCCcCHH---HHHHHhc-CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCH
Confidence 99999999753 3444443 2344332222212 22332111110 0122233333222 22456799999999
Q ss_pred ccHHHHHHHHHhCC---CceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCC--------
Q 004900 269 TTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK-------- 337 (724)
Q Consensus 269 ~~~e~La~~L~~~g---i~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~-------- 337 (724)
.+++.+++.|.+.+ +.+..+||+|++++|..+++.+ +..+|||||+++++|||+|+|++||++++++
T Consensus 290 ~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~ 367 (1283)
T TIGR01967 290 REIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRT 367 (1283)
T ss_pred HHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccccc
Confidence 99999999998764 4578999999999999886654 3468999999999999999999999999543
Q ss_pred ----------CHHHHHHHHcccCCCCCCCeEEEEEccccHHH
Q 004900 338 ----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (724)
Q Consensus 338 ----------S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~ 369 (724)
|..+|.||+|||||.| +|.|+.+|+..+...
T Consensus 368 ~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 368 KVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred CccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 6689999999999998 999999999877654
No 87
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=251.94 Aligned_cols=327 Identities=21% Similarity=0.257 Sum_probs=234.8
Q ss_pred HcCCCCCCHHHHHHHHHHHcC-CcEEEEcCCCchHHHHHHHHHHcC--------------CCeEEEEcCcHHHHHHHHHH
Q 004900 33 HFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--------------PGIVLVVSPLIALMENQVIG 97 (724)
Q Consensus 33 ~fG~~~lr~~Q~eaI~ail~g-~dvlv~apTGsGKTl~~~lpal~~--------------~~~vLVlsPl~aL~~qqv~~ 97 (724)
.+|..+|.++|..+..+++.+ .+++++||||+|||.++++-+|.. ...+++|+|.++|++.++..
T Consensus 304 F~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgs 383 (1674)
T KOG0951|consen 304 FFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGS 383 (1674)
T ss_pred cccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHH
Confidence 358899999999999999987 489999999999999999988852 45799999999999999987
Q ss_pred HHH----cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccc---cChhHHHHHHhhhhcCCccEEEEcccccc
Q 004900 98 LKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELT---ATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (724)
Q Consensus 98 l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i---~T~~~l~~L~~~~~~~~l~lIVIDEAH~l 170 (724)
+.+ +||.+.-+.+........ + ...+++++|||.. ...+--....+ .++++||||.|.+
T Consensus 384 fSkRla~~GI~V~ElTgD~~l~~~q-i--------eeTqVIV~TPEK~DiITRk~gdraY~q-----lvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 384 FSKRLAPLGITVLELTGDSQLGKEQ-I--------EETQVIVTTPEKWDIITRKSGDRAYEQ-----LVRLLIIDEIHLL 449 (1674)
T ss_pred HHhhccccCcEEEEecccccchhhh-h--------hcceeEEeccchhhhhhcccCchhHHH-----HHHHHhhhhhhhc
Confidence 655 688888777665543321 1 1378999999943 22211111111 2688999999998
Q ss_pred cc-CCCCChHHHHHH-HHH-H---hhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeec--cCCCCceEEEEEeccc-
Q 004900 171 SS-WGHDFRPSYRKL-SSL-R---NYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRYKDL- 241 (724)
Q Consensus 171 ~~-~G~dFrp~y~~L-~~l-~---~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~--s~~r~ni~~~v~~~~~- 241 (724)
-+ .|. ....+ .+. + ....++.+++||||+++- .|+...+....+.++.. ++..-.+.+++.....
T Consensus 450 hDdRGp----vLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek 523 (1674)
T KOG0951|consen 450 HDDRGP----VLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEK 523 (1674)
T ss_pred ccccch----HHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccCcccCcCCccceEeccccC
Confidence 44 342 12111 111 1 122378899999999986 56677776665544433 4443445555443211
Q ss_pred -hhhHHHHH-----HHHHHhcCCceEEEEecccccHHHHHHHHHhC----------------------------------
Q 004900 242 -LDDAYADL-----CSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------------------------------- 281 (724)
Q Consensus 242 -~~~k~~~L-----~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~---------------------------------- 281 (724)
....++.+ ..+++..+..++|||+.+|+++-+.|+.++..
T Consensus 524 ~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLk 603 (1674)
T KOG0951|consen 524 KPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLK 603 (1674)
T ss_pred CchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHH
Confidence 11122222 23556667789999999999999988887620
Q ss_pred ---CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEE----eeCC------CCCHHHHHHHHcc
Q 004900 282 ---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----HFNI------PKSMEAFYQESGR 348 (724)
Q Consensus 282 ---gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI----~~d~------P~S~~~yiQr~GR 348 (724)
.+..+++|+||+..+|..+.+.|..|+++|+|+|-.+++|+|+|.-.++| -||+ +.++.+.+|+.||
T Consensus 604 dLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 604 DLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred HHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 12357899999999999999999999999999999999999999888777 3553 3589999999999
Q ss_pred cCCCCC--CCeEEEEEccccHHHHHHHHHhccC
Q 004900 349 AGRDQL--PSKSLLYYGMDDRRRMEFILSKNQS 379 (724)
Q Consensus 349 AGRdG~--~g~~il~~~~~D~~~~~~i~~~~~~ 379 (724)
|||.+- .|..++.-+..++.....++++..+
T Consensus 684 agrp~~D~~gegiiit~~se~qyyls~mn~qLp 716 (1674)
T KOG0951|consen 684 AGRPQYDTCGEGIIITDHSELQYYLSLMNQQLP 716 (1674)
T ss_pred cCCCccCcCCceeeccCchHhhhhHHhhhhcCC
Confidence 999764 5677888888877777666665443
No 88
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.93 E-value=2.2e-25 Score=235.47 Aligned_cols=268 Identities=18% Similarity=0.236 Sum_probs=174.8
Q ss_pred eEEEEcCcHHHHHHHHHHHHHcCCce-----e--eecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh
Q 004900 80 IVLVVSPLIALMENQVIGLKEKGIAG-----E--FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK 152 (724)
Q Consensus 80 ~vLVlsPl~aL~~qqv~~l~~~gi~~-----~--~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~ 152 (724)
.+||+-|.++|++|...+++.+.... . .+.++...... ...+ .....|+++||- ++..+..
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q---~~ql---~~g~~ivvGtpg------Rl~~~is 355 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQ---CKQL---KDGTHIVVGTPG------RLLQPIS 355 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHH---HHHh---hcCceeeecCch------hhhhhhh
Confidence 57999999999999998777753221 1 11111111111 1111 123556555554 4433322
Q ss_pred --hhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCC-------CCCEEEEeecCChhhHHHHHH-hhccCCCeE
Q 004900 153 --IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQKDVME-SLCLQNPLV 222 (724)
Q Consensus 153 --~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-------~~pil~LSAT~~~~v~~di~~-~l~l~~~~v 222 (724)
........++|+|||+.++..|++ ..|..+....| ..+.+++|||+..-....+.+ .+.++-.+-
T Consensus 356 ~g~~~lt~crFlvlDead~lL~qgy~-----d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVd 430 (725)
T KOG0349|consen 356 KGLVTLTHCRFLVLDEADLLLGQGYD-----DKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVD 430 (725)
T ss_pred ccceeeeeeEEEEecchhhhhhcccH-----HHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEe
Confidence 122333678999999999987754 33444444443 357899999976432222221 122221111
Q ss_pred eeccCCCC----------------------------------ceEEEEEeccchhhHHHH-----HHHHHHhcCCceEEE
Q 004900 223 LKSSFNRP----------------------------------NLFYEVRYKDLLDDAYAD-----LCSVLKANGDTCAIV 263 (724)
Q Consensus 223 i~~s~~r~----------------------------------ni~~~v~~~~~~~~k~~~-----L~~lLk~~~~~~~II 263 (724)
++..-.-| |+..-............. -...++.+...++||
T Consensus 431 LkgeD~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaii 510 (725)
T KOG0349|consen 431 LKGEDLVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAII 510 (725)
T ss_pred cccccccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEE
Confidence 11110001 111000000001111111 112344556678999
Q ss_pred EecccccHHHHHHHHHhCC---CceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHH
Q 004900 264 YCLERTTCDELSAYLSAGG---ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSME 340 (724)
Q Consensus 264 f~~sr~~~e~La~~L~~~g---i~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~ 340 (724)
||+|+.+|+.|..++.+.| ++|..+||+..+.+|.+.++.|..+.++.||||+++++|+|+..+-++|+..+|.+..
T Consensus 511 fcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~ 590 (725)
T KOG0349|consen 511 FCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKT 590 (725)
T ss_pred EEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccc
Confidence 9999999999999999874 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcccCCCCCCCeEEEEEcc
Q 004900 341 AFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 341 ~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
.|+||+||+||+.+-|.+|.++..
T Consensus 591 nyvhrigrvgraermglaislvat 614 (725)
T KOG0349|consen 591 NYVHRIGRVGRAERMGLAISLVAT 614 (725)
T ss_pred hhhhhhhccchhhhcceeEEEeec
Confidence 999999999999999999988764
No 89
>PRK09694 helicase Cas3; Provisional
Probab=99.92 E-value=1.2e-23 Score=250.23 Aligned_cols=309 Identities=14% Similarity=0.111 Sum_probs=193.0
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---C--CCeEEEEcCcHHHHHHHHHHHHH-----cC-
Q 004900 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKE-----KG- 102 (724)
Q Consensus 34 fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~--~~~vLVlsPl~aL~~qqv~~l~~-----~g- 102 (724)
|+...+||+|..+......+.-+++.+|||+|||.++++.+.. . ...+++..||++++++.+.++.. ++
T Consensus 282 ~~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 282 DNGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred cCCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 5455799999988654444567899999999999998776642 2 35899999999999999998864 22
Q ss_pred CceeeecccchHHHH-HHHH-----------------hhhhcCC---CCccEEEeCcccccChhHHH--HHHhhhhcCCc
Q 004900 103 IAGEFLSSTQTMQVK-TKIY-----------------EDLDSGK---PSLRLLYVTPELTATPGFMS--KLKKIHSRGLL 159 (724)
Q Consensus 103 i~~~~l~s~~~~~~~-~~i~-----------------~~l~~~~---~~~~il~~TPE~i~T~~~l~--~L~~~~~~~~l 159 (724)
..+...++....... .... ..+..+. --..+.++|...+....+.. ...+.... .-
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L-a~ 440 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL-GR 440 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh-cc
Confidence 234444443321110 0000 0000000 01355666665433111100 00111100 13
Q ss_pred cEEEEccccccccCCCCChHHHHHHHHHHhhC--CCCCEEEEeecCChhhHHHHHHhhccCC--------CeEee-----
Q 004900 160 NLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--PDVPILALTATAAPKVQKDVMESLCLQN--------PLVLK----- 224 (724)
Q Consensus 160 ~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~--p~~pil~LSAT~~~~v~~di~~~l~l~~--------~~vi~----- 224 (724)
++|||||+|.+..+. . ..|..+.+.. .+.++|+||||++...+..+.+.++... |.+..
T Consensus 441 svvIiDEVHAyD~ym----~--~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~ 514 (878)
T PRK09694 441 SVLIVDEVHAYDAYM----Y--GLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNG 514 (878)
T ss_pred CeEEEechhhCCHHH----H--HHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhcccccccccccccccccccccc
Confidence 589999999864321 1 1122232221 3688999999999998888777654321 11100
Q ss_pred -----ccCC----CCceEEEEEec--c---chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCC---Cceee
Q 004900 225 -----SSFN----RPNLFYEVRYK--D---LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG---ISCAA 287 (724)
Q Consensus 225 -----~s~~----r~ni~~~v~~~--~---~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~g---i~v~~ 287 (724)
.... .......+... . .....++.+.+.+. .+.++||||||++.++.+++.|++.+ ..+..
T Consensus 515 ~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~--~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~l 592 (878)
T PRK09694 515 AQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAAN--AGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDL 592 (878)
T ss_pred ceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHh--cCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEE
Confidence 0000 00111111111 1 11122333333332 45689999999999999999999764 67999
Q ss_pred ecCCCCHHHH----HHHHHHh-hcCC---ceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCC
Q 004900 288 YHAGLNDKAR----SSVLDDW-ISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL 354 (724)
Q Consensus 288 ~H~~l~~~eR----~~vl~~F-~~g~---~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~ 354 (724)
+||.++..+| .++++.| ++|+ ..|||||+++++|||+ +++++|....| ++.|+||+||+||.+.
T Consensus 593 lHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 593 FHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred EeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCCC--HHHHHHHHhccCCCCC
Confidence 9999999999 4577788 5665 4799999999999999 68999998888 7899999999999886
No 90
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=5e-23 Score=251.09 Aligned_cols=332 Identities=20% Similarity=0.243 Sum_probs=202.5
Q ss_pred CCchHHHHHHHHHHc----------CC---CCCCHHHHHHHHHHH----cC-CcEEEEcCCCchHHHHHH--HHHHc---
Q 004900 20 LHEKEALVKLLRWHF----------GH---AQFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCYQ--IPALA--- 76 (724)
Q Consensus 20 ~~~~~~l~~~L~~~f----------G~---~~lr~~Q~eaI~ail----~g-~dvlv~apTGsGKTl~~~--lpal~--- 76 (724)
+..++++.+.++... .+ ..+|++|.+||.++. .| +.++++||||+|||++.+ +-.+.
T Consensus 382 f~~p~~L~~~l~~~~~~~~~~l~~~~~~~~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~ 461 (1123)
T PRK11448 382 WHTPEGLLDLLESDIEAANQWLADEPFDYGLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAK 461 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhhhhhccCcccCCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcC
Confidence 555666777666421 12 358999999998876 23 679999999999997643 22232
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCcee-eecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH-Hhhh
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGE-FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL-KKIH 154 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~-~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L-~~~~ 154 (724)
..+++|||+|+.+|+.|....+..++.... .+....... .+.... ...+.+|+++|...+....+...- ....
T Consensus 462 ~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~~~~~i~~i~---~L~~~~--~~~~~~I~iaTiQtl~~~~~~~~~~~~~~ 536 (1123)
T PRK11448 462 RFRRILFLVDRSALGEQAEDAFKDTKIEGDQTFASIYDIK---GLEDKF--PEDETKVHVATVQGMVKRILYSDDPMDKP 536 (1123)
T ss_pred ccCeEEEEecHHHHHHHHHHHHHhcccccccchhhhhchh---hhhhhc--ccCCCCEEEEEHHHHHHhhhccccccccC
Confidence 246899999999999999999998765432 111100000 000111 122467888877654322111000 0112
Q ss_pred hcCCccEEEEcccccccc------CC-CCCh---HHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhcc-------
Q 004900 155 SRGLLNLVAIDEAHCISS------WG-HDFR---PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCL------- 217 (724)
Q Consensus 155 ~~~~l~lIVIDEAH~l~~------~G-~dFr---p~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l------- 217 (724)
..+.+++|||||||+-.. .| ..|| ..|.....+...+ +..+|+|||||...... .+|-
T Consensus 537 ~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r~t~~----~FG~pv~~Ysl 611 (1123)
T PRK11448 537 PVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF-DAVKIGLTATPALHTTE----IFGEPVYTYSY 611 (1123)
T ss_pred CCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhc-CccEEEEecCCccchhH----HhCCeeEEeeH
Confidence 345688999999999531 00 0111 2234444455543 56799999999754322 1221
Q ss_pred ---------C---CCeEeeccCCCCceEEEEE---------e-----ccchh--------------------hHHHHHHH
Q 004900 218 ---------Q---NPLVLKSSFNRPNLFYEVR---------Y-----KDLLD--------------------DAYADLCS 251 (724)
Q Consensus 218 ---------~---~~~vi~~s~~r~ni~~~v~---------~-----~~~~~--------------------~k~~~L~~ 251 (724)
- .|..+...+....+.+... . ....+ .....+.+
T Consensus 612 ~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~ 691 (1123)
T PRK11448 612 REAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAK 691 (1123)
T ss_pred HHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0 0111111111111111000 0 00000 00112223
Q ss_pred HHHhcCCceEEEEecccccHHHHHHHHHhC------CC---ceeeecCCCCHHHHHHHHHHhhcCCc-eEEEEccccccc
Q 004900 252 VLKANGDTCAIVYCLERTTCDELSAYLSAG------GI---SCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMG 321 (724)
Q Consensus 252 lLk~~~~~~~IIf~~sr~~~e~La~~L~~~------gi---~v~~~H~~l~~~eR~~vl~~F~~g~~-~VLVAT~a~g~G 321 (724)
.+....+.++||||.++.+|+.+++.|.+. ++ .+..+||+++ ++..++++|+++.. .|+|+++.+.+|
T Consensus 692 ~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG 769 (1123)
T PRK11448 692 YLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTG 769 (1123)
T ss_pred HHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccC
Confidence 333334578999999999999999988653 22 3556888875 46779999999887 689999999999
Q ss_pred cCCCCcceEEeeCCCCCHHHHHHHHcccCCCCC--CCeEEEEEc
Q 004900 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL--PSKSLLYYG 363 (724)
Q Consensus 322 IDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~--~g~~il~~~ 363 (724)
+|+|.|.+||++.++.|...|+|++||+.|-.. .....++++
T Consensus 770 ~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 770 IDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred CCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 999999999999999999999999999999643 233444444
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.2e-22 Score=237.42 Aligned_cols=324 Identities=21% Similarity=0.213 Sum_probs=236.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++.+|+. +++.|.-..-.+..|+ |+.|.||+|||+++.+|++. .+..+-|++|+..|+.+..+.+..
T Consensus 70 vrEa~~R~lg~~-~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~ 146 (830)
T PRK12904 70 VREASKRVLGMR-HFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLY 146 (830)
T ss_pred HHHHHHHHhCCC-CCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHH
Confidence 445667777876 6788887766666664 99999999999999999963 455678999999999998888766
Q ss_pred --cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH---HhhhhcCCccEEEEccccccccC--
Q 004900 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSW-- 173 (724)
Q Consensus 101 --~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L---~~~~~~~~l~lIVIDEAH~l~~~-- 173 (724)
+|+.+.++.++.....+...+. .+|+|+||-.+.-......+ ........+.++||||||.|+=.
T Consensus 147 ~~LGlsv~~i~~~~~~~er~~~y~--------~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeA 218 (830)
T PRK12904 147 EFLGLSVGVILSGMSPEERREAYA--------ADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEA 218 (830)
T ss_pred hhcCCeEEEEcCCCCHHHHHHhcC--------CCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccC
Confidence 5899999988888777665542 68999999877433222222 11123456889999999988510
Q ss_pred -------C--CCChHHHHHHHHH------------------------------------------------------Hhh
Q 004900 174 -------G--HDFRPSYRKLSSL------------------------------------------------------RNY 190 (724)
Q Consensus 174 -------G--~dFrp~y~~L~~l------------------------------------------------------~~~ 190 (724)
| .+....|..+..+ +..
T Consensus 219 rtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~ 298 (830)
T PRK12904 219 RTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAH 298 (830)
T ss_pred CCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHH
Confidence 0 0000011111000 000
Q ss_pred --C------------------------C----------------C----------------------CCEEEEeecCChh
Q 004900 191 --L------------------------P----------------D----------------------VPILALTATAAPK 206 (724)
Q Consensus 191 --~------------------------p----------------~----------------------~pil~LSAT~~~~ 206 (724)
+ + + ..+.+||+|+..+
T Consensus 299 ~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te 378 (830)
T PRK12904 299 ELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTE 378 (830)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHH
Confidence 0 0 0 0156778887543
Q ss_pred hHHHHHHhhccCCCeEeeccCCCCceEEEE---EeccchhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhC
Q 004900 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (724)
Q Consensus 207 v~~di~~~l~l~~~~vi~~s~~r~ni~~~v---~~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~ 281 (724)
..++.+.. +-.++..+.++|.+.... .+. ...+++..+.+.+.. ..+.++||||+|+..++.++..|...
T Consensus 379 -~~E~~~iY---~l~vv~IPtnkp~~r~d~~d~i~~-t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~ 453 (830)
T PRK12904 379 -AEEFREIY---NLDVVVIPTNRPMIRIDHPDLIYK-TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKA 453 (830)
T ss_pred -HHHHHHHh---CCCEEEcCCCCCeeeeeCCCeEEE-CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 33444433 334556677777776542 222 235678888887755 56789999999999999999999999
Q ss_pred CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCc----------------------------------
Q 004900 282 GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------------------------- 327 (724)
Q Consensus 282 gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V---------------------------------- 327 (724)
|+++..+||. +.+|+..+..|+.+...|+|||+.+|||+|++=-
T Consensus 454 gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 531 (830)
T PRK12904 454 GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVL 531 (830)
T ss_pred CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHH
Confidence 9999999995 7899999999999999999999999999998632
Q ss_pred ----ceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 328 ----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 328 ----~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
=+||....|.|..---|-.|||||.|.||.+..|++-+|-
T Consensus 532 ~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD~ 575 (830)
T PRK12904 532 EAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDD 575 (830)
T ss_pred HcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCcH
Confidence 2788999999999999999999999999999999997774
No 92
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=2.7e-22 Score=240.86 Aligned_cols=308 Identities=17% Similarity=0.163 Sum_probs=214.5
Q ss_pred CCCHHHHHHHHHHH----cCCcEEEEcCCCchHHHHHHH--HHHc----CCCeEEEEcCcHHHHHHHHHHHHHcC--Cce
Q 004900 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQI--PALA----KPGIVLVVSPLIALMENQVIGLKEKG--IAG 105 (724)
Q Consensus 38 ~lr~~Q~eaI~ail----~g~dvlv~apTGsGKTl~~~l--pal~----~~~~vLVlsPl~aL~~qqv~~l~~~g--i~~ 105 (724)
.++|+|.+++..++ .|..+|+...+|.|||+..+. ..+. ..+.+|||+|. +++.+|.+++.++. +.+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l~v 247 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPVLRA 247 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCCCce
Confidence 68999999998875 577899999999999985432 2222 24678999998 66789999999864 333
Q ss_pred eeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHH
Q 004900 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (724)
Q Consensus 106 ~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~ 185 (724)
..+++... .+........ ....++|+++|.+++.... .......+++|||||||++.... ..+.
T Consensus 248 ~~~~G~~~--eR~~~~~~~~-~~~~~dVvITSYe~l~~e~------~~L~k~~W~~VIvDEAHrIKN~~-------Skls 311 (1033)
T PLN03142 248 VKFHGNPE--ERAHQREELL-VAGKFDVCVTSFEMAIKEK------TALKRFSWRYIIIDEAHRIKNEN-------SLLS 311 (1033)
T ss_pred EEEeCCHH--HHHHHHHHHh-cccCCCcceecHHHHHHHH------HHhccCCCCEEEEcCccccCCHH-------HHHH
Confidence 33333222 2222222111 1124788999988775431 11222348899999999987532 2334
Q ss_pred HHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc---------------------------------------
Q 004900 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS--------------------------------------- 226 (724)
Q Consensus 186 ~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s--------------------------------------- 226 (724)
.....+.....++|||||-.+-..+++..+.+-.|.++...
T Consensus 312 kalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~ 391 (1033)
T PLN03142 312 KTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE 391 (1033)
T ss_pred HHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 44444455668999999998888888877776655433110
Q ss_pred CCCCceEEEEEeccch--------------------------------------------------------------hh
Q 004900 227 FNRPNLFYEVRYKDLL--------------------------------------------------------------DD 244 (724)
Q Consensus 227 ~~r~ni~~~v~~~~~~--------------------------------------------------------------~~ 244 (724)
...|.....+...... ..
T Consensus 392 ~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~Sg 471 (1033)
T PLN03142 392 KGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSG 471 (1033)
T ss_pred hhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhh
Confidence 0011111111110000 01
Q ss_pred HHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcC---CceEEEEccccc
Q 004900 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATVAFG 319 (724)
Q Consensus 245 k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g---~~~VLVAT~a~g 319 (724)
++..|..+|.. ..+.++|||+......+.|..+|...|+.+..+||+++..+|..+++.|... ...+|++|.+.|
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 11122222221 2356899999999999999999999999999999999999999999999853 346789999999
Q ss_pred cccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEE
Q 004900 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYY 362 (724)
Q Consensus 320 ~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~ 362 (724)
.|||+..+++||+||+|+++..+.|++||+.|.|+...+.+|.
T Consensus 552 lGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 552 LGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred cCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 9999999999999999999999999999999999988776653
No 93
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.90 E-value=1.4e-22 Score=230.81 Aligned_cols=321 Identities=20% Similarity=0.240 Sum_probs=217.2
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHH---cCCCeEEEEcCcHHHHHHHHHHHHHcCCcee
Q 004900 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (724)
Q Consensus 30 L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal---~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~ 106 (724)
+-..|+|+ +-.+|++||-++..|.+|+|.|+|.+|||+++-..+. .+..++|+.+|.++|-+|..+.|+...-.+.
T Consensus 290 ~a~~~pFe-lD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg 368 (1248)
T KOG0947|consen 290 MALIYPFE-LDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVG 368 (1248)
T ss_pred HHhhCCCC-ccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccc
Confidence 33346775 7789999999999999999999999999998655433 2467899999999999999999987433333
Q ss_pred eecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHH
Q 004900 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (724)
Q Consensus 107 ~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~ 186 (724)
.+.+.. ..+|+...|+.|.|++.+--. ....-.+.+.+||+||+|-+.+.... --..+
T Consensus 369 LlTGDv-------------qinPeAsCLIMTTEILRsMLY----rgadliRDvE~VIFDEVHYiND~eRG-----vVWEE 426 (1248)
T KOG0947|consen 369 LLTGDV-------------QINPEASCLIMTTEILRSMLY----RGADLIRDVEFVIFDEVHYINDVERG-----VVWEE 426 (1248)
T ss_pred eeecce-------------eeCCCcceEeehHHHHHHHHh----cccchhhccceEEEeeeeeccccccc-----cccee
Confidence 443322 234678889999887654211 11111233899999999999773211 11233
Q ss_pred HHhhCC-CCCEEEEeecCChhhHHHHHHhhccC-CCeEeec-cCCCCceE--EEEEec----------------------
Q 004900 187 LRNYLP-DVPILALTATAAPKVQKDVMESLCLQ-NPLVLKS-SFNRPNLF--YEVRYK---------------------- 239 (724)
Q Consensus 187 l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~-~~~vi~~-s~~r~ni~--~~v~~~---------------------- 239 (724)
+.-.+| ++.+|+||||.++.. ++..+.|-. ...++.. ...||.-. |....+
T Consensus 427 ViIMlP~HV~~IlLSATVPN~~--EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~ 504 (1248)
T KOG0947|consen 427 VIIMLPRHVNFILLSATVPNTL--EFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKD 504 (1248)
T ss_pred eeeeccccceEEEEeccCCChH--HHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhh
Confidence 444455 799999999988763 345555422 1122222 22232110 000000
Q ss_pred --------------------------------cc---------hh---hHHHHHHHHHHhcCCceEEEEecccccHHHHH
Q 004900 240 --------------------------------DL---------LD---DAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (724)
Q Consensus 240 --------------------------------~~---------~~---~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La 275 (724)
.. .. ..+-.+...|+...--|+||||-+++.|++.+
T Consensus 505 ~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a 584 (1248)
T KOG0947|consen 505 SLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYA 584 (1248)
T ss_pred hhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHH
Confidence 00 00 12444555565555568999999999999999
Q ss_pred HHHHhCCC---------------------------------------ceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 276 AYLSAGGI---------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 276 ~~L~~~gi---------------------------------------~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
+.|....+ .++.+|||+=+--++-|.--|..|-++||+||.
T Consensus 585 ~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATE 664 (1248)
T KOG0947|consen 585 DYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATE 664 (1248)
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehh
Confidence 99965332 247799999999999999999999999999999
Q ss_pred ccccccCCCCcceEEeeCCC---------CCHHHHHHHHcccCCCCCC--CeEEEEEcc--ccHHHHHHHHHh
Q 004900 317 AFGMGIDRKDVRLVCHFNIP---------KSMEAFYQESGRAGRDQLP--SKSLLYYGM--DDRRRMEFILSK 376 (724)
Q Consensus 317 a~g~GIDip~V~~VI~~d~P---------~S~~~yiQr~GRAGRdG~~--g~~il~~~~--~D~~~~~~i~~~ 376 (724)
.|+||||.|. |.||+-.+- -.+-+|+|++|||||.|.. |.+|++... .+...++.++-.
T Consensus 665 TFAMGVNMPA-RtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G 736 (1248)
T KOG0947|consen 665 TFAMGVNMPA-RTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMG 736 (1248)
T ss_pred hhhhhcCCCc-eeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcC
Confidence 9999999995 455544443 2678999999999999974 555655543 345556666543
No 94
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=6.3e-22 Score=231.50 Aligned_cols=325 Identities=20% Similarity=0.167 Sum_probs=219.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++.+|.. +++.|.-.--.+..| -|+.|+||+|||++|.+|++. .+..++||+|++.|+.|..+.+..
T Consensus 71 vrEa~~R~lg~~-~ydvQliGg~~Lh~G--~Iaem~TGeGKTL~a~Lpa~~~al~G~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 71 VREVSLRTLGLR-HFDVQLIGGMVLHEG--NIAEMRTGEGKTLVATLPAYLNAISGRGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred HHHHHHHHcCCC-cchHHHhhhhhhccC--ccccccCCCCchHHHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHh
Confidence 344556677765 456666554444444 499999999999999999984 456799999999999998888776
Q ss_pred --cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH---HhhhhcCCccEEEEccccccccC--
Q 004900 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSW-- 173 (724)
Q Consensus 101 --~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L---~~~~~~~~l~lIVIDEAH~l~~~-- 173 (724)
+|+.+.++.++.....+...+ ..+|+|+||-.+.-......+ ....-++.+.++||||||.|+=.
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~y--------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeA 219 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEAY--------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEA 219 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHHh--------CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhcc
Confidence 578888888877766654443 268999999876322211111 00011356899999999998521
Q ss_pred -------C--CCChHHHHHHHHHHhhCC---------------CCCEEEEeec---------------------------
Q 004900 174 -------G--HDFRPSYRKLSSLRNYLP---------------DVPILALTAT--------------------------- 202 (724)
Q Consensus 174 -------G--~dFrp~y~~L~~l~~~~p---------------~~pil~LSAT--------------------------- 202 (724)
| .+....|..+..+...+. +...+.||-.
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~ 299 (896)
T PRK13104 220 RTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNI 299 (896)
T ss_pred CCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhh
Confidence 1 111223433333222111 1122334332
Q ss_pred --------------------------------------------------------------------------------
Q 004900 203 -------------------------------------------------------------------------------- 202 (724)
Q Consensus 203 -------------------------------------------------------------------------------- 202 (724)
T Consensus 300 ~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y 379 (896)
T PRK13104 300 MLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMY 379 (896)
T ss_pred hHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhc
Confidence
Q ss_pred ---------CChhhHHHHHHhhccCCCeEeeccCCCCceEEEEE--eccchhhHHHHHHHHHHh--cCCceEEEEecccc
Q 004900 203 ---------AAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 269 (724)
Q Consensus 203 ---------~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~--~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~ 269 (724)
+... ..++.+.. +-.++..+.++|.+..... .-.....++..+.+.+.. ..+.|+||||+|++
T Consensus 380 ~kLsGMTGTa~te-~~Ef~~iY---~l~Vv~IPtnkp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie 455 (896)
T PRK13104 380 NKLSGMTGTADTE-AYEFQQIY---NLEVVVIPTNRSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIE 455 (896)
T ss_pred chhccCCCCChhH-HHHHHHHh---CCCEEECCCCCCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHH
Confidence 1111 01111111 1112222333443322111 011124566666655532 35789999999999
Q ss_pred cHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCC-----------------------
Q 004900 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD----------------------- 326 (724)
Q Consensus 270 ~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~----------------------- 326 (724)
.++.++..|.+.|+++..+||++.+.++..+.+.|+.|. |+|||+++|+|+|+.=
T Consensus 456 ~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~ 533 (896)
T PRK13104 456 ASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAV 533 (896)
T ss_pred HHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCcceecCCchhhhhhccccchhhHHHHHH
Confidence 999999999999999999999999999999999999995 9999999999999761
Q ss_pred ----------c-----ceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 327 ----------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 327 ----------V-----~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
| =+||-...+.|..---|-.|||||.|.||.+..|++-+|-
T Consensus 534 ~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD~ 589 (896)
T PRK13104 534 KKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDN 589 (896)
T ss_pred HHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 1 2788888899999999999999999999999999997774
No 95
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.90 E-value=2.3e-22 Score=237.43 Aligned_cols=308 Identities=25% Similarity=0.259 Sum_probs=207.7
Q ss_pred HHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHH---HHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeee
Q 004900 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (724)
Q Consensus 32 ~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~l---pal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l 108 (724)
..+||+ +-++|++++.++..|.+|+|+||||+|||++.-. -++.++.++++.+|.++|.+|.++.|.......
T Consensus 114 ~~~~F~-LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv--- 189 (1041)
T COG4581 114 REYPFE-LDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV--- 189 (1041)
T ss_pred HhCCCC-cCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh---
Confidence 337886 8899999999999999999999999999997443 345567789999999999999999988743222
Q ss_pred cccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHH
Q 004900 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLR 188 (724)
Q Consensus 109 ~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~ 188 (724)
.....+..+-.+.+++..+++.|.|++.+-.. ........+..||+||+|+|.+.. |. .......
T Consensus 190 ------~~~vGL~TGDv~IN~~A~clvMTTEILRnMly----rg~~~~~~i~~ViFDEvHyi~D~e---RG--~VWEE~I 254 (1041)
T COG4581 190 ------ADMVGLMTGDVSINPDAPCLVMTTEILRNMLY----RGSESLRDIEWVVFDEVHYIGDRE---RG--VVWEEVI 254 (1041)
T ss_pred ------hhhccceecceeeCCCCceEEeeHHHHHHHhc----cCcccccccceEEEEeeeeccccc---cc--hhHHHHH
Confidence 00000111112233457777777787654322 122334558999999999998743 22 2234445
Q ss_pred hhCC-CCCEEEEeecCChhhHHHHHHhhcc--CCCeEeeccCCCCceE-EEEEec----cchhh-------H--------
Q 004900 189 NYLP-DVPILALTATAAPKVQKDVMESLCL--QNPLVLKSSFNRPNLF-YEVRYK----DLLDD-------A-------- 245 (724)
Q Consensus 189 ~~~p-~~pil~LSAT~~~~v~~di~~~l~l--~~~~vi~~s~~r~ni~-~~v~~~----~~~~~-------k-------- 245 (724)
-.+| ++++++||||.+.... +..+++. ..+..+.....||.-. ..+... +..++ .
T Consensus 255 i~lP~~v~~v~LSATv~N~~E--F~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l 332 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPNAEE--FAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSL 332 (1041)
T ss_pred HhcCCCCcEEEEeCCCCCHHH--HHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhh
Confidence 5556 6799999999887643 3444442 3444444444444321 111100 00000 0
Q ss_pred ----------------------------------HHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC----------
Q 004900 246 ----------------------------------YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------- 281 (724)
Q Consensus 246 ----------------------------------~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~---------- 281 (724)
.-.+...+.....-++|+|+-+++.|+..+..+...
T Consensus 333 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~ 412 (1041)
T COG4581 333 SCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKER 412 (1041)
T ss_pred hccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHH
Confidence 011222333334457999999999999888877521
Q ss_pred ------------------CCc-------------eeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceE
Q 004900 282 ------------------GIS-------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (724)
Q Consensus 282 ------------------gi~-------------v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~V 330 (724)
+++ ..++|+||=+..|..+...|..|.++|++||..|++|+|.|.- .|
T Consensus 413 ~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar-tv 491 (1041)
T COG4581 413 AIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR-TV 491 (1041)
T ss_pred HHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc-ce
Confidence 121 3578999999999999999999999999999999999999954 44
Q ss_pred EeeCC---------CCCHHHHHHHHcccCCCCCC--CeEEEE
Q 004900 331 CHFNI---------PKSMEAFYQESGRAGRDQLP--SKSLLY 361 (724)
Q Consensus 331 I~~d~---------P~S~~~yiQr~GRAGRdG~~--g~~il~ 361 (724)
+...+ +-+...|.|..|||||.|.. |.+|+.
T Consensus 492 v~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~ 533 (1041)
T COG4581 492 VFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVI 533 (1041)
T ss_pred eeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEe
Confidence 43333 34899999999999999975 455555
No 96
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=225.52 Aligned_cols=337 Identities=19% Similarity=0.293 Sum_probs=229.9
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHH--HHHHcCCcEEEEcCCCchHHHHHHHHHH----cCCCeEEEEcCcHHHHHHHHHH
Q 004900 24 EALVKLLRWHFGHAQFRDKQLDAI--QAVLSGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIG 97 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~~Q~eaI--~ail~g~dvlv~apTGsGKTl~~~lpal----~~~~~vLVlsPl~aL~~qqv~~ 97 (724)
+.........+|+..++.||.+++ +.++.+++.+..+||++|||++.-+-++ .+...++.+.|..+.+......
T Consensus 209 ~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~ 288 (1008)
T KOG0950|consen 209 TKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISA 288 (1008)
T ss_pred hHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhh
Confidence 344444445579999999999997 6788899999999999999999877654 4678899999999999988888
Q ss_pred HHHcCCceee----ecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccC
Q 004900 98 LKEKGIAGEF----LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (724)
Q Consensus 98 l~~~gi~~~~----l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~ 173 (724)
+..+.+...+ ..+...+.. ......+.++|.|+..+ ..+.+........+++|||||-|.+.+-
T Consensus 289 l~~~~~~~G~~ve~y~g~~~p~~----------~~k~~sv~i~tiEkans--lin~lie~g~~~~~g~vvVdElhmi~d~ 356 (1008)
T KOG0950|consen 289 LSPFSIDLGFPVEEYAGRFPPEK----------RRKRESVAIATIEKANS--LINSLIEQGRLDFLGMVVVDELHMIGDK 356 (1008)
T ss_pred hhhhccccCCcchhhcccCCCCC----------cccceeeeeeehHhhHh--HHHHHHhcCCccccCcEEEeeeeeeecc
Confidence 8776544433 322211111 11235688888887654 3444545555556899999999999986
Q ss_pred CCCChHHHHHHHHHHhhCC--CCCEEEEeecCChhhHHHHHHhhcc----C--CCeEeeccCCCCceEEEEEeccchhhH
Q 004900 174 GHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCL----Q--NPLVLKSSFNRPNLFYEVRYKDLLDDA 245 (724)
Q Consensus 174 G~dFrp~y~~L~~l~~~~p--~~pil~LSAT~~~~v~~di~~~l~l----~--~~~vi~~s~~r~ni~~~v~~~~~~~~k 245 (724)
|.+.--. .-|.+++-... .+++|+||||.++. .++..++.- . .|+.+.....--...|... ....
T Consensus 357 ~rg~~lE-~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~i~~~~----r~~~ 429 (1008)
T KOG0950|consen 357 GRGAILE-LLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVPLKEYIKPGSLIYESS----RNKV 429 (1008)
T ss_pred ccchHHH-HHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCcccchhccCCCcccccch----hhHH
Confidence 6442111 11333333333 35699999999875 334444431 0 1221111111112222221 0111
Q ss_pred HHHHHH----------------HHHh--cCCceEEEEecccccHHHHHHHHHhC-----------C--------------
Q 004900 246 YADLCS----------------VLKA--NGDTCAIVYCLERTTCDELSAYLSAG-----------G-------------- 282 (724)
Q Consensus 246 ~~~L~~----------------lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~-----------g-------------- 282 (724)
+..+.. +..+ ..+.++||||++++.|+.+|..+... +
T Consensus 430 lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~ 509 (1008)
T KOG0950|consen 430 LREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRI 509 (1008)
T ss_pred HHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcC
Confidence 111111 1110 12345999999999999998666320 1
Q ss_pred -------------CceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCC----CCCHHHHHHH
Q 004900 283 -------------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI----PKSMEAFYQE 345 (724)
Q Consensus 283 -------------i~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~----P~S~~~yiQr 345 (724)
+.+.++|+|++.++|..+...|++|.+.|++||+.+..|+|.|..|++|-.-+ +.+..+|.|+
T Consensus 510 ~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM 589 (1008)
T KOG0950|consen 510 PGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQM 589 (1008)
T ss_pred CcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhh
Confidence 13577899999999999999999999999999999999999999999986543 3578999999
Q ss_pred HcccCCCCC--CCeEEEEEccccHHHHHHHHHhccC
Q 004900 346 SGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKNQS 379 (724)
Q Consensus 346 ~GRAGRdG~--~g~~il~~~~~D~~~~~~i~~~~~~ 379 (724)
+|||||.|- .|.+++++...+..++..++.....
T Consensus 590 ~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv~~~~~ 625 (1008)
T KOG0950|consen 590 VGRAGRTGIDTLGDSILIIKSSEKKRVRELVNSPLK 625 (1008)
T ss_pred hhhhhhcccccCcceEEEeeccchhHHHHHHhcccc
Confidence 999999985 6789999999999888888776543
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=4.7e-20 Score=215.26 Aligned_cols=325 Identities=20% Similarity=0.151 Sum_probs=219.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++.+|.. +++.|.-.--.+..| -|+.|+||.|||++|.+|++. .+..|.||+|+..|+.+-.+.+..
T Consensus 71 vrEaa~R~lgm~-~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 71 VREASKRVFEMR-HFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGKGVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred HHHHHHHHhCCC-cCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 345566777875 567776544444444 599999999999999999975 456699999999999987777655
Q ss_pred --cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH---hhhhcCCccEEEEccccccccC--
Q 004900 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW-- 173 (724)
Q Consensus 101 --~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~---~~~~~~~l~lIVIDEAH~l~~~-- 173 (724)
+|+.+.++.++.....+...+ ..+|+|+||-.+.-..+...+. ...-+..+.++||||||.++-.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~~Y--------~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEA 219 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKAAY--------NADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEA 219 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHhcC--------CCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccC
Confidence 688888887776654433222 3789999998764332222211 1112355889999999988631
Q ss_pred -------C--CCChHHHHHHHHHHhhCC--------------------CCC-----------------------------
Q 004900 174 -------G--HDFRPSYRKLSSLRNYLP--------------------DVP----------------------------- 195 (724)
Q Consensus 174 -------G--~dFrp~y~~L~~l~~~~p--------------------~~p----------------------------- 195 (724)
| ..-...|..+..+...+. ...
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~ 299 (908)
T PRK13107 220 RTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLY 299 (908)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCccccc
Confidence 1 011122322221111110 111
Q ss_pred --------------------------------------------------------------------------------
Q 004900 196 -------------------------------------------------------------------------------- 195 (724)
Q Consensus 196 -------------------------------------------------------------------------------- 195 (724)
T Consensus 300 ~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (908)
T PRK13107 300 SAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQN 379 (908)
T ss_pred CchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHH
Confidence
Q ss_pred -------EEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEE--eccchhhHHHHHHHHHHh--cCCceEEEE
Q 004900 196 -------ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVY 264 (724)
Q Consensus 196 -------il~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~--~~~~~~~k~~~L~~lLk~--~~~~~~IIf 264 (724)
+.+||+|+..+. .++.+.. +-.++..+.++|.+..... .......++..+.+.+.. ..+.++|||
T Consensus 380 fFr~Y~kL~GMTGTa~te~-~Ef~~iY---~l~Vv~IPTnkp~~R~d~~d~iy~t~~~K~~Aii~ei~~~~~~GrpVLV~ 455 (908)
T PRK13107 380 YFRQYEKLAGMTGTADTEA-FEFQHIY---GLDTVVVPTNRPMVRKDMADLVYLTADEKYQAIIKDIKDCRERGQPVLVG 455 (908)
T ss_pred HHHhhhHhhcccCCChHHH-HHHHHHh---CCCEEECCCCCCccceeCCCcEEeCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 223333332211 1111111 1122233344444332211 011124566666655543 357889999
Q ss_pred ecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCC------------------
Q 004900 265 CLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD------------------ 326 (724)
Q Consensus 265 ~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~------------------ 326 (724)
|.|+..++.++..|...|+++..+||++.+.++..+.+.|+.|. |+|||+++|+|+|+.=
T Consensus 456 t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~ 533 (908)
T PRK13107 456 TVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQ 533 (908)
T ss_pred eCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHH
Confidence 99999999999999999999999999999999999999999999 9999999999999761
Q ss_pred --------------c-----ceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 327 --------------V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 327 --------------V-----~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
| =+||-...+.|..---|-.|||||.|.||.+..|++.+|-
T Consensus 534 ~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED~ 593 (908)
T PRK13107 534 KAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMEDS 593 (908)
T ss_pred HHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCcH
Confidence 2 2788888999999999999999999999999999998775
No 98
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.87 E-value=2.5e-20 Score=215.15 Aligned_cols=291 Identities=19% Similarity=0.254 Sum_probs=207.8
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHH---cCCCeEEEEcCcHHHHHHHHHHHHH
Q 004900 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal---~~~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
+++.+.+++..|+ .|+..|+--...++.|++.-++||||.|||..-++.++ .+++++++|+||..|+.|.++.+..
T Consensus 69 e~~~~fF~k~~G~-~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~ 147 (1187)
T COG1110 69 EEFEEFFKKATGF-RPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKK 147 (1187)
T ss_pred HHHHHHHHHhhCC-CchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHH
Confidence 4556667777788 69999999999999999999999999999976555444 3578999999999999999999998
Q ss_pred cCC-----ceee-ecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCC
Q 004900 101 KGI-----AGEF-LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (724)
Q Consensus 101 ~gi-----~~~~-l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G 174 (724)
++- .... .|+......+....+.+.+|. ++|+++|. .|+..-.......++++|+||++|.++.-+
T Consensus 148 ~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gd--fdIlitTs------~FL~k~~e~L~~~kFdfifVDDVDA~Lkas 219 (1187)
T COG1110 148 FAEDAGSLDVLVVYHSALPTKEKEEALERIESGD--FDILITTS------QFLSKRFEELSKLKFDFIFVDDVDAILKAS 219 (1187)
T ss_pred HHhhcCCcceeeeeccccchHHHHHHHHHHhcCC--ccEEEEeH------HHHHhhHHHhcccCCCEEEEccHHHHHhcc
Confidence 752 2222 567778888889999998886 77766655 444433333333569999999999887532
Q ss_pred C---------CChHH--------------H------HHHHHHHh---------hCCCCCEEEEeecCChhh-HHH-HHHh
Q 004900 175 H---------DFRPS--------------Y------RKLSSLRN---------YLPDVPILALTATAAPKV-QKD-VMES 214 (724)
Q Consensus 175 ~---------dFrp~--------------y------~~L~~l~~---------~~p~~pil~LSAT~~~~v-~~d-i~~~ 214 (724)
- .|-.. + ..+.+... ......++..|||..+.- +.. +...
T Consensus 220 kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReL 299 (1187)
T COG1110 220 KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFREL 299 (1187)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHH
Confidence 1 01110 0 11111111 112356889999987764 222 3334
Q ss_pred hccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecc---cccHHHHHHHHHhCCCceeeecCC
Q 004900 215 LCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLE---RTTCDELSAYLSAGGISCAAYHAG 291 (724)
Q Consensus 215 l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~s---r~~~e~La~~L~~~gi~v~~~H~~ 291 (724)
||+.-. .......|+.-..... .....+.++++..+. -+|||++. ++.+++|+++|+..|+++..+|++
T Consensus 300 lgFevG---~~~~~LRNIvD~y~~~----~~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~ 371 (1187)
T COG1110 300 LGFEVG---SGGEGLRNIVDIYVES----ESLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE 371 (1187)
T ss_pred hCCccC---ccchhhhheeeeeccC----ccHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc
Confidence 443221 1222233443322222 455667777777665 48999999 999999999999999999999994
Q ss_pred CCHHHHHHHHHHhhcCCceEEEEc----cccccccCCCC-cceEEeeCCC
Q 004900 292 LNDKARSSVLDDWISSRKQVVVAT----VAFGMGIDRKD-VRLVCHFNIP 336 (724)
Q Consensus 292 l~~~eR~~vl~~F~~g~~~VLVAT----~a~g~GIDip~-V~~VI~~d~P 336 (724)
- ...++.|..|+++|||.. .++-+|||+|. ++++|+|++|
T Consensus 372 ~-----~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 372 K-----EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred c-----hhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 3 567899999999999984 57899999995 8999999999
No 99
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.86 E-value=2.1e-21 Score=216.74 Aligned_cols=313 Identities=20% Similarity=0.248 Sum_probs=206.2
Q ss_pred CCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH--HHH-HcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHH
Q 004900 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115 (724)
Q Consensus 39 lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~--lpa-l~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~ 115 (724)
+-|+|..+|..+-++.+++|.|-|.+|||.++- +.. +....+||+.+|.++|-+|.+++|..-.-.+..-.+..
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDV--- 206 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDV--- 206 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecce---
Confidence 668999999999999999999999999998754 333 34578999999999999999999876322333222222
Q ss_pred HHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc--CCCCChHHHHHHHHHHhhCC-
Q 004900 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS--WGHDFRPSYRKLSSLRNYLP- 192 (724)
Q Consensus 116 ~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~--~G~dFrp~y~~L~~l~~~~p- 192 (724)
...|+..-|+.|.|++.+--. ...--.+.+.+||+||.|-|-+ .|.- ..+-.-.+|
T Consensus 207 ----------TInP~ASCLVMTTEILRsMLY----RGSEvmrEVaWVIFDEIHYMRDkERGVV-------WEETIIllP~ 265 (1041)
T KOG0948|consen 207 ----------TINPDASCLVMTTEILRSMLY----RGSEVMREVAWVIFDEIHYMRDKERGVV-------WEETIILLPD 265 (1041)
T ss_pred ----------eeCCCCceeeeHHHHHHHHHh----ccchHhheeeeEEeeeehhcccccccee-------eeeeEEeccc
Confidence 234567778888887654211 1122234489999999998855 2211 011111234
Q ss_pred CCCEEEEeecCChhhH-HHHHHhhccCCCeEeeccCCCCce-------------EEEEEecc-chhhHHHHH--------
Q 004900 193 DVPILALTATAAPKVQ-KDVMESLCLQNPLVLKSSFNRPNL-------------FYEVRYKD-LLDDAYADL-------- 249 (724)
Q Consensus 193 ~~pil~LSAT~~~~v~-~di~~~l~l~~~~vi~~s~~r~ni-------------~~~v~~~~-~~~~k~~~L-------- 249 (724)
++..++||||.++..+ .+.+..+.-+.+.++-..+ ||.- +..|..+. ...+.+...
T Consensus 266 ~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdy-RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~ 344 (1041)
T KOG0948|consen 266 NVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDY-RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAG 344 (1041)
T ss_pred cceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecC-CCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccC
Confidence 7889999999998743 2233333333333333332 3221 11221110 111122211
Q ss_pred ------------------------------HHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc---------------
Q 004900 250 ------------------------------CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS--------------- 284 (724)
Q Consensus 250 ------------------------------~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~--------------- 284 (724)
...+-.....++|||+-++++|+.+|-.+.+..++
T Consensus 345 ~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nA 424 (1041)
T KOG0948|consen 345 ESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNA 424 (1041)
T ss_pred CCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHH
Confidence 11122233457999999999999999988754332
Q ss_pred ------------------------eeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCC---
Q 004900 285 ------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK--- 337 (724)
Q Consensus 285 ------------------------v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~--- 337 (724)
+.++|+|+=+--++.|.=-|++|-+++|+||..|++|+|.|.-.+|+ ...-+
T Consensus 425 i~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvF-T~~rKfDG 503 (1041)
T KOG0948|consen 425 IDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVF-TAVRKFDG 503 (1041)
T ss_pred HHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEE-eeccccCC
Confidence 47899999998888888889999999999999999999999555444 33321
Q ss_pred ------CHHHHHHHHcccCCCCCC--CeEEEEEc-cccHHHHHHHHHhc
Q 004900 338 ------SMEAFYQESGRAGRDQLP--SKSLLYYG-MDDRRRMEFILSKN 377 (724)
Q Consensus 338 ------S~~~yiQr~GRAGRdG~~--g~~il~~~-~~D~~~~~~i~~~~ 377 (724)
|--+|+|++|||||.|.. |.||++.+ +-+....+.+++..
T Consensus 504 ~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~ 552 (1041)
T KOG0948|consen 504 KKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGS 552 (1041)
T ss_pred cceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCC
Confidence 567899999999999975 55666655 33445555666543
No 100
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.86 E-value=1.4e-20 Score=189.41 Aligned_cols=183 Identities=20% Similarity=0.237 Sum_probs=137.1
Q ss_pred CCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc--------CCCeEEEEcCcH
Q 004900 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA--------KPGIVLVVSPLI 88 (724)
Q Consensus 17 ~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~--------~~~~vLVlsPl~ 88 (724)
|..+.+++.+.+.|.+ +|+..|+++|.++++.+.+|+++++.+|||+|||++|++|++. .++++||++|++
T Consensus 1 ~~~~~~~~~i~~~l~~-~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~ 79 (203)
T cd00268 1 FEELGLSPELLRGIYA-LGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTR 79 (203)
T ss_pred CCcCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCH
Confidence 5678888999999999 8999999999999999999999999999999999999999873 245799999999
Q ss_pred HHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEE
Q 004900 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (724)
Q Consensus 89 aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVI 164 (724)
+|+.|+...+..+ ++.+..+.++.........+. .+.+++++||+.+..... ........++++||
T Consensus 80 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~iiv~T~~~l~~~l~----~~~~~~~~l~~lIv 149 (203)
T cd00268 80 ELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK------RGPHIVVATPGRLLDLLE----RGKLDLSKVKYLVL 149 (203)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc------CCCCEEEEChHHHHHHHH----cCCCChhhCCEEEE
Confidence 9999999888776 556666666555443332221 246899999886543111 11123345899999
Q ss_pred ccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhh
Q 004900 165 DEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESL 215 (724)
Q Consensus 165 DEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l 215 (724)
||||.+.+++ |...+..+ ...++ +++++++|||+++.+...+...+
T Consensus 150 DE~h~~~~~~--~~~~~~~~---~~~l~~~~~~~~~SAT~~~~~~~~~~~~~ 196 (203)
T cd00268 150 DEADRMLDMG--FEDQIREI---LKLLPKDRQTLLFSATMPKEVRDLARKFL 196 (203)
T ss_pred eChHHhhccC--hHHHHHHH---HHhCCcccEEEEEeccCCHHHHHHHHHHC
Confidence 9999998655 44444433 33333 78999999999988766555543
No 101
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.86 E-value=1.3e-19 Score=211.59 Aligned_cols=116 Identities=22% Similarity=0.343 Sum_probs=107.2
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeC--
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN-- 334 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d-- 334 (724)
.+.++||||+|++.++.|+..|.+.|+.+..+|+++++.+|..+++.|+.|++.|||||+.+++|+|+|++++||+++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi~Dad 520 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDAD 520 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEEeCcc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ---CCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHH
Q 004900 335 ---IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFI 373 (724)
Q Consensus 335 ---~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i 373 (724)
.|.+...|+|++|||||. ..|.+++|++..+....+.+
T Consensus 521 ifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 521 KEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred cccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 799999999999999998 58999999987765544433
No 102
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.86 E-value=1.6e-19 Score=187.54 Aligned_cols=297 Identities=19% Similarity=0.248 Sum_probs=195.1
Q ss_pred CCCCHHHHHHHHHHH----cCCcEEEEcCCCchHHH-HHHH--HHHcCCCeEEEEcCcHHHHHHHHHHHHHc--CCceee
Q 004900 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM-CYQI--PALAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEF 107 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail----~g~dvlv~apTGsGKTl-~~~l--pal~~~~~vLVlsPl~aL~~qqv~~l~~~--gi~~~~ 107 (724)
.+++|+|+.+-+.++ ...+.+++|-||+|||- .|+. .++..++.+.+.+|....+.+.+.+|+.. ++....
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF~~~~I~~ 175 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAFSNCDIDL 175 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhhccCCeee
Confidence 378999998776654 56899999999999994 5553 45668999999999999999988888872 245555
Q ss_pred ecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHH
Q 004900 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (724)
Q Consensus 108 l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l 187 (724)
+++...... -+|-+++|...+.++.+ .++++||||+|...--. | ...+..+...
T Consensus 176 Lyg~S~~~f-------------------r~plvVaTtHQLlrFk~-----aFD~liIDEVDAFP~~~-d-~~L~~Av~~a 229 (441)
T COG4098 176 LYGDSDSYF-------------------RAPLVVATTHQLLRFKQ-----AFDLLIIDEVDAFPFSD-D-QSLQYAVKKA 229 (441)
T ss_pred EecCCchhc-------------------cccEEEEehHHHHHHHh-----hccEEEEeccccccccC-C-HHHHHHHHHh
Confidence 554332211 13445666554433332 28999999999754211 1 1112223332
Q ss_pred HhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEE-EEEeccchhhHH------HHHHHHHHhc--CC
Q 004900 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFY-EVRYKDLLDDAY------ADLCSVLKAN--GD 258 (724)
Q Consensus 188 ~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~-~v~~~~~~~~k~------~~L~~lLk~~--~~ 258 (724)
+ -+..+.+.||||++.+..+++... -.....+..-+++..+.. ..........++ -.|..+|+.. .+
T Consensus 230 r--k~~g~~IylTATp~k~l~r~~~~g--~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~ 305 (441)
T COG4098 230 R--KKEGATIYLTATPTKKLERKILKG--NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTG 305 (441)
T ss_pred h--cccCceEEEecCChHHHHHHhhhC--CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcC
Confidence 2 246789999999999887766432 111122222222211110 011111111222 2466666543 45
Q ss_pred ceEEEEecccccHHHHHHHHHhC-C-CceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCC-
Q 004900 259 TCAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI- 335 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~-g-i~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~- 335 (724)
.+++||++++...+.+++.|++. + ......|+ .+..|.+..+.|++|++.+||+|.++++|+-+|+|++.+.-.-
T Consensus 306 ~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs--~d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh 383 (441)
T COG4098 306 RPVLIFFPEIETMEQVAAALKKKLPKETIASVHS--EDQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEH 383 (441)
T ss_pred CcEEEEecchHHHHHHHHHHHhhCCccceeeeec--cCccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCc
Confidence 78999999999999999999653 3 33467777 4567888999999999999999999999999999998664332
Q ss_pred -CCCHHHHHHHHcccCCCCC-CCeEEEEEccc
Q 004900 336 -PKSMEAFYQESGRAGRDQL-PSKSLLYYGMD 365 (724)
Q Consensus 336 -P~S~~~yiQr~GRAGRdG~-~g~~il~~~~~ 365 (724)
--+-+.++|..||+||.-. |.--++||..+
T Consensus 384 ~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G 415 (441)
T COG4098 384 RVFTESALVQIAGRVGRSLERPTGDVLFFHYG 415 (441)
T ss_pred ccccHHHHHHHhhhccCCCcCCCCcEEEEecc
Confidence 2578999999999999754 33334455443
No 103
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=1.3e-19 Score=210.33 Aligned_cols=322 Identities=20% Similarity=0.227 Sum_probs=236.2
Q ss_pred CCCCHHHHHHHHHHHcC----CcEEEEcCCCchHHHHHHH---HHHcCCCeEEEEcCcHHHHHHHHHHHHH-cCCceeee
Q 004900 37 AQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g----~dvlv~apTGsGKTl~~~l---pal~~~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l 108 (724)
..+.+.|..++..+.+. ...++.+.||+|||-+|+= .++..+..+||++|-++|..|...+|+. ||.++..+
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vl 276 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAVL 276 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhhh
Confidence 36778999999998765 5789999999999999863 3456788999999999999999999987 89999999
Q ss_pred cccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCC-ChHHHHHHHHH
Q 004900 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHD-FRPSYRKLSSL 187 (724)
Q Consensus 109 ~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~d-Frp~y~~L~~l 187 (724)
|++.+..++...|..+..|. .+|+++|---+.+|- .+|++|||||-|.-+--..+ .|-.-+.+..+
T Consensus 277 HS~Ls~~er~~~W~~~~~G~--~~vVIGtRSAlF~Pf-----------~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~ 343 (730)
T COG1198 277 HSGLSPGERYRVWRRARRGE--ARVVIGTRSALFLPF-----------KNLGLIIVDEEHDSSYKQEDGPRYHARDVAVL 343 (730)
T ss_pred cccCChHHHHHHHHHHhcCC--ceEEEEechhhcCch-----------hhccEEEEeccccccccCCcCCCcCHHHHHHH
Confidence 99999999999999999886 899999988777763 34899999999986543222 33334678888
Q ss_pred HhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC---CCceEEEEEecc-------chhhHHHHHHHHHHhcC
Q 004900 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNLFYEVRYKD-------LLDDAYADLCSVLKANG 257 (724)
Q Consensus 188 ~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~---r~ni~~~v~~~~-------~~~~k~~~L~~lLk~~~ 257 (724)
+....++|+|+-|||++-+....+.. |--....+..-+. .|++.+.-.... .....++.+...|. .
T Consensus 344 Ra~~~~~pvvLgSATPSLES~~~~~~--g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~--~ 419 (730)
T COG1198 344 RAKKENAPVVLGSATPSLESYANAES--GKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE--R 419 (730)
T ss_pred HHHHhCCCEEEecCCCCHHHHHhhhc--CceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh--c
Confidence 99889999999999999876654421 1001111211122 333332221111 11334444444443 3
Q ss_pred CceEEEEeccc------------------------------------------------------------ccHHHHHHH
Q 004900 258 DTCAIVYCLER------------------------------------------------------------TTCDELSAY 277 (724)
Q Consensus 258 ~~~~IIf~~sr------------------------------------------------------------~~~e~La~~ 277 (724)
++++|+|.|.| --++++++.
T Consensus 420 geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gterieee 499 (730)
T COG1198 420 GEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEE 499 (730)
T ss_pred CCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHH
Confidence 56788887665 223777777
Q ss_pred HHhC--CCceeeecCCCCHHH--HHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCC------------CHHH
Q 004900 278 LSAG--GISCAAYHAGLNDKA--RSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEA 341 (724)
Q Consensus 278 L~~~--gi~v~~~H~~l~~~e--R~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~------------S~~~ 341 (724)
|... +.++..+.++.+... -...+..|.+|+.+|||.|..+..|.|+|+|..|...|... ...-
T Consensus 500 L~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fql 579 (730)
T COG1198 500 LKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQL 579 (730)
T ss_pred HHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHH
Confidence 7765 667777777765433 45679999999999999999999999999999988766542 4567
Q ss_pred HHHHHcccCCCCCCCeEEEEEccccHHHHHHHHH
Q 004900 342 FYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 342 yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~ 375 (724)
+.|-.|||||.+.+|.+++-.-..|...++.+..
T Consensus 580 l~QvaGRAgR~~~~G~VvIQT~~P~hp~i~~~~~ 613 (730)
T COG1198 580 LMQVAGRAGRAGKPGEVVIQTYNPDHPAIQALKR 613 (730)
T ss_pred HHHHHhhhccCCCCCeEEEEeCCCCcHHHHHHHh
Confidence 8999999999999999887755555455555444
No 104
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=2.9e-19 Score=208.99 Aligned_cols=121 Identities=19% Similarity=0.197 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCC-ceEEEEcccccc
Q 004900 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGM 320 (724)
Q Consensus 244 ~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~-~~VLVAT~a~g~ 320 (724)
.++..+..-+.. ..+.|+||-|.|....+.++..|.+.|++...+++.-...+-.-|-+ .|. ..|.|||+.+|+
T Consensus 552 ~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~Ea~iia~---AG~~g~VTIATNmAGR 628 (970)
T PRK12899 552 EKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIAG---AGKLGAVTVATNMAGR 628 (970)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhhHHHHHHh---cCCCCcEEEeeccccC
Confidence 455555544332 25678999999999999999999999999888888644433333322 243 469999999999
Q ss_pred ccCCCC---c-----ceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 321 GIDRKD---V-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 321 GIDip~---V-----~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
|.|+.= | =+||....|.|..---|-.||+||.|.||.+..|++-+|-
T Consensus 629 GTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~lSlEDd 683 (970)
T PRK12899 629 GTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFFLSFEDR 683 (970)
T ss_pred CcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEEEEcchH
Confidence 999752 2 2789999999999999999999999999999999997774
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.84 E-value=1e-19 Score=216.16 Aligned_cols=314 Identities=21% Similarity=0.173 Sum_probs=196.9
Q ss_pred CCHHHHHHHHHHHcC---C-cEEEEcCCCchHHHHHHHHHHc-------CCCeEEEEcCcHHHHHHHHHHHHHcCCcee-
Q 004900 39 FRDKQLDAIQAVLSG---R-DCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMENQVIGLKEKGIAGE- 106 (724)
Q Consensus 39 lr~~Q~eaI~ail~g---~-dvlv~apTGsGKTl~~~lpal~-------~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~- 106 (724)
.++.|..++..+.+. . .+++.||||+|||.+.+++++. ...+++.+.|++++++++++.++..+-...
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~ 275 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSV 275 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccccc
Confidence 378999999888754 4 7889999999999999988763 256899999999999999999887321111
Q ss_pred --e-ecccchHHHHHHHHh---hhhcCC-----CCccEEEeCcccccC----hhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 107 --F-LSSTQTMQVKTKIYE---DLDSGK-----PSLRLLYVTPELTAT----PGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 107 --~-l~s~~~~~~~~~i~~---~l~~~~-----~~~~il~~TPE~i~T----~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
. +++.....-...... ...... .-+.+.+++|..+.. +.....+..+. .+++|+||+|.+.
T Consensus 276 ~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~S~vIlDE~h~~~ 351 (733)
T COG1203 276 IGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLL----TSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHH----hhchhhccHHhhc
Confidence 1 122221111100000 000000 012222333332221 11111011122 5789999999987
Q ss_pred cCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc----CCCCceEEEEEeccchhhHHH
Q 004900 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVRYKDLLDDAYA 247 (724)
Q Consensus 172 ~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s----~~r~ni~~~v~~~~~~~~k~~ 247 (724)
+.. . -.....+-.+... -+.++|++|||+++.....+...++-........+ .+.+.+..... .+..+....
T Consensus 352 ~~~-~-~~~l~~~i~~l~~-~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~ 427 (733)
T COG1203 352 DET-M-LAALLALLEALAE-AGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER-VDVEDGPQE 427 (733)
T ss_pred ccc-h-HHHHHHHHHHHHh-CCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc-hhhhhhhhH
Confidence 642 1 1112222222222 38999999999999998888877754443333222 12222221111 111111000
Q ss_pred HHHHHH--HhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHh----hcCCceEEEEccccccc
Q 004900 248 DLCSVL--KANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW----ISSRKQVVVATVAFGMG 321 (724)
Q Consensus 248 ~L~~lL--k~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F----~~g~~~VLVAT~a~g~G 321 (724)
.+.... .-..+.+++|.|||+..|.+++..|+..+..+..+|+.+...+|.+.++.+ ..++..|+|||++.+.|
T Consensus 428 ~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEag 507 (733)
T COG1203 428 ELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAG 507 (733)
T ss_pred hhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEE
Confidence 111111 123467899999999999999999999887899999999999998877754 45788999999999999
Q ss_pred cCCCCcceEEeeCCCCCHHHHHHHHcccCCCC--CCCeEEEEEc
Q 004900 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ--LPSKSLLYYG 363 (724)
Q Consensus 322 IDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG--~~g~~il~~~ 363 (724)
||+ +.+++|- -+..+.+.+||.||++|.| ..|..+++-.
T Consensus 508 vDi-dfd~mIT--e~aPidSLIQR~GRv~R~g~~~~~~~~v~~~ 548 (733)
T COG1203 508 VDI-DFDVLIT--ELAPIDSLIQRAGRVNRHGKKENGKIYVYND 548 (733)
T ss_pred ecc-ccCeeee--cCCCHHHHHHHHHHHhhcccccCCceeEeec
Confidence 997 4665553 3556999999999999999 5666666644
No 106
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.83 E-value=4.2e-18 Score=199.91 Aligned_cols=121 Identities=21% Similarity=0.329 Sum_probs=107.6
Q ss_pred HHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCC
Q 004900 245 AYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDR 324 (724)
Q Consensus 245 k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDi 324 (724)
.+..|..+++ .+.++||||+|++.++.|+..|...|+++..+||++++.+|..+++.|+.|++.|+|||+.+++|+|+
T Consensus 435 L~~~L~~~~~--~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdl 512 (652)
T PRK05298 435 LLSEIRKRVA--KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDI 512 (652)
T ss_pred HHHHHHHHHh--CCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccc
Confidence 3344444333 35689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceEEeeCC-----CCCHHHHHHHHcccCCCCCCCeEEEEEccccHH
Q 004900 325 KDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (724)
Q Consensus 325 p~V~~VI~~d~-----P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~ 368 (724)
|++++||+++. |.+...|+||+||+||. ..|.+++|++..+..
T Consensus 513 p~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~ 560 (652)
T PRK05298 513 PEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDS 560 (652)
T ss_pred cCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHH
Confidence 99999999885 78999999999999996 689999999865443
No 107
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=8.8e-19 Score=205.41 Aligned_cols=124 Identities=23% Similarity=0.267 Sum_probs=112.0
Q ss_pred hhHHHHHHHHHHhc--CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc
Q 004900 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (724)
Q Consensus 243 ~~k~~~L~~lLk~~--~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~ 320 (724)
.+++..|.+.+... .+.++||||+|++.++.|+..|...|+++..+|+ .+.+|+..+..|..+...|+|||+.+||
T Consensus 581 ~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGR 658 (1025)
T PRK12900 581 REKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGR 658 (1025)
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCC
Confidence 46778888877543 5789999999999999999999999999999997 6889999999999999999999999999
Q ss_pred ccCCC---Ccc-----eEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHH
Q 004900 321 GIDRK---DVR-----LVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (724)
Q Consensus 321 GIDip---~V~-----~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~ 368 (724)
|+|++ .|. +||++..|.|...|.|++||+||.|.+|.++.|++.+|.-
T Consensus 659 GtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~L 714 (1025)
T PRK12900 659 GTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDEL 714 (1025)
T ss_pred CCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHHH
Confidence 99999 564 4499999999999999999999999999999999987754
No 108
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.81 E-value=2.1e-18 Score=203.05 Aligned_cols=305 Identities=18% Similarity=0.200 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEcCcHHHHHHHHHHHHH-cCCceeeecccch
Q 004900 41 DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQT 113 (724)
Q Consensus 41 ~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l~s~~~ 113 (724)
....+.+.++..++-+++.+|||+|||. ++|..+ ..+.+.+.=|.|--+.....++.. +|.+..-..+
T Consensus 53 ~~~~~i~~ai~~~~vvii~getGsGKTT--qlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG--- 127 (845)
T COG1643 53 AVRDEILKAIEQNQVVIIVGETGSGKTT--QLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG--- 127 (845)
T ss_pred HHHHHHHHHHHhCCEEEEeCCCCCChHH--HHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee---
Confidence 3455667777778889999999999998 555432 245666777998666666665544 3332110000
Q ss_pred HHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCC-
Q 004900 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP- 192 (724)
Q Consensus 114 ~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p- 192 (724)
... .+++. -.+..+|-|+|.-++ +..+.....+..+++|||||||.=+- ..||- +.-+..+....+
T Consensus 128 Y~i---Rfe~~--~s~~Trik~mTdGiL-----lrei~~D~~Ls~ys~vIiDEaHERSl-~tDil--Lgllk~~~~~rr~ 194 (845)
T COG1643 128 YSI---RFESK--VSPRTRIKVMTDGIL-----LREIQNDPLLSGYSVVIIDEAHERSL-NTDIL--LGLLKDLLARRRD 194 (845)
T ss_pred EEE---Eeecc--CCCCceeEEeccHHH-----HHHHhhCcccccCCEEEEcchhhhhH-HHHHH--HHHHHHHHhhcCC
Confidence 000 00000 112355655555443 33445455567799999999996542 11211 111233333344
Q ss_pred CCCEEEEeecCChhhHHHHHHhhccCCCeEeecc-CCCCceEEEEEe-ccc-hhhHHHHHHHHHHhcCCceEEEEecccc
Q 004900 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS-FNRPNLFYEVRY-KDL-LDDAYADLCSVLKANGDTCAIVYCLERT 269 (724)
Q Consensus 193 ~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s-~~r~ni~~~v~~-~~~-~~~k~~~L~~lLk~~~~~~~IIf~~sr~ 269 (724)
+..+|.+|||+..+- +.+.++- .|++...+ ...-.++|.-.. .+. ..+.+..........+.+.+|||.+...
T Consensus 195 DLKiIimSATld~~r---fs~~f~~-apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~ 270 (845)
T COG1643 195 DLKLIIMSATLDAER---FSAYFGN-APVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQR 270 (845)
T ss_pred CceEEEEecccCHHH---HHHHcCC-CCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHH
Confidence 688999999998764 3444432 33333222 223334442211 111 2222222233333345678999999999
Q ss_pred cHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCC---------
Q 004900 270 TCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP--------- 336 (724)
Q Consensus 270 ~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P--------- 336 (724)
+.+.+++.|.+ ..+.+.++||.|+.+++..+++--..|.-+||+||++++.+|-+|+|++||.-+.-
T Consensus 271 EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~ 350 (845)
T COG1643 271 EIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRT 350 (845)
T ss_pred HHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCccccccccccc
Confidence 99999999987 34678999999999999988777777777799999999999999999999976643
Q ss_pred ---------CCHHHHHHHHcccCCCCCCCeEEEEEccccHH
Q 004900 337 ---------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (724)
Q Consensus 337 ---------~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~ 368 (724)
-|-.+.-||.|||||-+ +|.|+=+|+.++..
T Consensus 351 g~~~L~~~~ISqAsA~QRaGRAGR~~-pGicyRLyse~~~~ 390 (845)
T COG1643 351 GLTRLETEPISKASADQRAGRAGRTG-PGICYRLYSEEDFL 390 (845)
T ss_pred CceeeeEEEechhhhhhhccccccCC-CceEEEecCHHHHH
Confidence 37788999999999996 99999999986654
No 109
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.80 E-value=4.7e-19 Score=172.41 Aligned_cols=156 Identities=30% Similarity=0.399 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---C--CCeEEEEcCcHHHHHHHHHHHHHcCC----ceeeecc
Q 004900 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKEKGI----AGEFLSS 110 (724)
Q Consensus 40 r~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~--~~~vLVlsPl~aL~~qqv~~l~~~gi----~~~~l~s 110 (724)
+|+|.++++.+.+|+++++.+|||+|||++|++|++. . ...+||++|+++|+.|+.+.+..++. ....+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHG 80 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEEST
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccc
Confidence 5899999999999999999999999999999998864 3 34999999999999999999988643 4555655
Q ss_pred cchHH-HHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHh
Q 004900 111 TQTMQ-VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (724)
Q Consensus 111 ~~~~~-~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~ 189 (724)
+.... ...... . ...+++++||+.+...... ... ....+++|||||+|++..|+ |+..+..+.....
T Consensus 81 ~~~~~~~~~~~~----~--~~~~ilv~T~~~l~~~~~~---~~~-~~~~~~~iViDE~h~l~~~~--~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 81 GQSISEDQREVL----S--NQADILVTTPEQLLDLISN---GKI-NISRLSLIVIDEAHHLSDET--FRAMLKSILRRLK 148 (169)
T ss_dssp TSCHHHHHHHHH----H--TTSSEEEEEHHHHHHHHHT---TSS-TGTTESEEEEETHHHHHHTT--HHHHHHHHHHHSH
T ss_pred cccccccccccc----c--ccccccccCcchhhccccc---ccc-ccccceeeccCccccccccc--HHHHHHHHHHHhc
Confidence 55433 222222 1 1378999999875421111 111 23348999999999999984 6777777766665
Q ss_pred hCCCCCEEEEeecCChhh
Q 004900 190 YLPDVPILALTATAAPKV 207 (724)
Q Consensus 190 ~~p~~pil~LSAT~~~~v 207 (724)
..++.+++++|||+++.+
T Consensus 149 ~~~~~~~i~~SAT~~~~~ 166 (169)
T PF00270_consen 149 RFKNIQIILLSATLPSNV 166 (169)
T ss_dssp TTTTSEEEEEESSSTHHH
T ss_pred CCCCCcEEEEeeCCChhH
Confidence 566789999999999554
No 110
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.80 E-value=4.3e-18 Score=191.34 Aligned_cols=310 Identities=19% Similarity=0.198 Sum_probs=226.9
Q ss_pred CCCCHHHHHHHHHHH----cCCcEEEEcCCCchHHHHH--HHHHHc----CCCeEEEEcCcHHHHHHHHHHHHHc--CCc
Q 004900 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCY--QIPALA----KPGIVLVVSPLIALMENQVIGLKEK--GIA 104 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail----~g~dvlv~apTGsGKTl~~--~lpal~----~~~~vLVlsPl~aL~~qqv~~l~~~--gi~ 104 (724)
..+|++|.+.++.+. +|-++|+.-..|-|||+-. ++.-+. -.|.-|||+|.-.| ..|+.+++++ .++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P~l~ 244 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTPSLN 244 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCCCcc
Confidence 479999999988765 6778999999999999742 222221 26889999999887 6899999997 466
Q ss_pred eeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHH
Q 004900 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (724)
Q Consensus 105 ~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L 184 (724)
+..+++.. .++.....++.... ..+|+++|.|++.... ..|. .-.+.++||||||++.... ..|
T Consensus 245 ~~~~~Gdk--~eR~~~~r~~~~~~-~fdV~iTsYEi~i~dk--~~lk----~~~W~ylvIDEaHRiKN~~-------s~L 308 (971)
T KOG0385|consen 245 VVVYHGDK--EERAALRRDIMLPG-RFDVCITSYEIAIKDK--SFLK----KFNWRYLVIDEAHRIKNEK-------SKL 308 (971)
T ss_pred eEEEeCCH--HHHHHHHHHhhccC-CCceEeehHHHHHhhH--HHHh----cCCceEEEechhhhhcchh-------hHH
Confidence 66666554 45555555544332 5889999999876542 1222 2348999999999998744 456
Q ss_pred HHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc------CC------------------------------
Q 004900 185 SSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN------------------------------ 228 (724)
Q Consensus 185 ~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s------~~------------------------------ 228 (724)
..+.+.|.-.-.+++|+|+-.+-..+++..|++--|.++... |+
T Consensus 309 ~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dV 388 (971)
T KOG0385|consen 309 SKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDV 388 (971)
T ss_pred HHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhH
Confidence 667777777778999999998888888888777666555320 00
Q ss_pred ----CCceEEEEE------------------------------------------------------eccc---------
Q 004900 229 ----RPNLFYEVR------------------------------------------------------YKDL--------- 241 (724)
Q Consensus 229 ----r~ni~~~v~------------------------------------------------------~~~~--------- 241 (724)
.|...+.+. +...
T Consensus 389 e~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~ 468 (971)
T KOG0385|consen 389 EKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVT 468 (971)
T ss_pred hhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHh
Confidence 000011110 0000
Q ss_pred hhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcC---CceEEEEcc
Q 004900 242 LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS---RKQVVVATV 316 (724)
Q Consensus 242 ~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g---~~~VLVAT~ 316 (724)
...++..|..+|.. ..+.++|||-.-....+-|-.++.-+|+...-+.|.++.++|...++.|... ..-.|++|.
T Consensus 469 nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 469 NSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred cCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 00111222222221 2456899999888888888888888899999999999999999999999854 456789999
Q ss_pred ccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEc
Q 004900 317 AFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (724)
Q Consensus 317 a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~ 363 (724)
|.|.|||+...+.||.||..+++..-+|...||.|-|+...+++|--
T Consensus 549 AGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RL 595 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRL 595 (971)
T ss_pred ccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEE
Confidence 99999999999999999999999999999999999999888777643
No 111
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.4e-16 Score=182.71 Aligned_cols=323 Identities=20% Similarity=0.210 Sum_probs=225.9
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++.+|+. +++.|.-+.-.++.|+ ++.|.||.|||++..+|++. .+..+-|++|+--|+.+..+.+..
T Consensus 67 vREa~~R~lg~r-~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 67 AREAAERTLGLR-PFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred HHHHHHHHcCCC-cchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 445667778886 6799999988888875 88999999999999998875 577899999999999988877655
Q ss_pred --cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH---hhhhcCCccEEEEccccccccC--
Q 004900 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW-- 173 (724)
Q Consensus 101 --~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~---~~~~~~~l~lIVIDEAH~l~~~-- 173 (724)
+|+.+.++.+......+...+. .+|.|+|.--+.-......+. ...-.+.+.+.||||+|.++=.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeA 215 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAAYA--------CDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEA 215 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHHHc--------CCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccc
Confidence 6899999988888777776663 678999887655433333221 1222345889999999987520
Q ss_pred -------C---------------------CCCh----------------------------------HHHHHHH-HHHhh
Q 004900 174 -------G---------------------HDFR----------------------------------PSYRKLS-SLRNY 190 (724)
Q Consensus 174 -------G---------------------~dFr----------------------------------p~y~~L~-~l~~~ 190 (724)
| .+|. ..+..+. .++..
T Consensus 216 rtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~ 295 (764)
T PRK12326 216 LVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAH 295 (764)
T ss_pred cCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHH
Confidence 0 0010 0000000 01110
Q ss_pred --C------------------------C----------------C----------------------CCEEEEeecCChh
Q 004900 191 --L------------------------P----------------D----------------------VPILALTATAAPK 206 (724)
Q Consensus 191 --~------------------------p----------------~----------------------~pil~LSAT~~~~ 206 (724)
+ + + ..+.+||+|+...
T Consensus 296 ~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~ 375 (764)
T PRK12326 296 ALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAA 375 (764)
T ss_pred HHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhH
Confidence 0 0 0 0166788887544
Q ss_pred hHHHHHHhhccCCCeEeeccCCCCceEEEE---EeccchhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhC
Q 004900 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG 281 (724)
Q Consensus 207 v~~di~~~l~l~~~~vi~~s~~r~ni~~~v---~~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~ 281 (724)
...+.+..++ .++..+.++|.+.... .+.. ...++..+.+-+.. ..+.|+||.|.|....+.|+..|.+.
T Consensus 376 -~~Ef~~iY~l---~Vv~IPtnkp~~R~d~~d~iy~t-~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~ 450 (764)
T PRK12326 376 -GEQLRQFYDL---GVSVIPPNKPNIREDEADRVYAT-AAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAA 450 (764)
T ss_pred -HHHHHHHhCC---cEEECCCCCCceeecCCCceEeC-HHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 3445554444 3556677777765432 1222 24566666554433 35789999999999999999999999
Q ss_pred CCceeeecCCCCHHHHHHHHHHhhcCC-ceEEEEccccccccCCC----------Cc-----ceEEeeCCCCCHHHHHHH
Q 004900 282 GISCAAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRK----------DV-----RLVCHFNIPKSMEAFYQE 345 (724)
Q Consensus 282 gi~v~~~H~~l~~~eR~~vl~~F~~g~-~~VLVAT~a~g~GIDip----------~V-----~~VI~~d~P~S~~~yiQr 345 (724)
|++...+++.-...+-.-|-+ .|+ ..|.|||+.+|+|.|+. .| =+||-...+.|..---|-
T Consensus 451 gI~h~vLNAk~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QL 527 (764)
T PRK12326 451 GVPAVVLNAKNDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQL 527 (764)
T ss_pred CCcceeeccCchHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHH
Confidence 999999998755444222222 233 35899999999999976 22 379999999999999999
Q ss_pred HcccCCCCCCCeEEEEEccccH
Q 004900 346 SGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 346 ~GRAGRdG~~g~~il~~~~~D~ 367 (724)
.||+||.|.||.+..|++-+|-
T Consensus 528 rGRaGRQGDpGss~f~lSleDd 549 (764)
T PRK12326 528 RGRAGRQGDPGSSVFFVSLEDD 549 (764)
T ss_pred hcccccCCCCCceeEEEEcchh
Confidence 9999999999999999997774
No 112
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.78 E-value=9.5e-18 Score=187.91 Aligned_cols=301 Identities=19% Similarity=0.226 Sum_probs=199.7
Q ss_pred HHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEcCcHHHHHHHHHHHHH-cCCceeeecccchHHH
Q 004900 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (724)
Q Consensus 44 ~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~ 116 (724)
.+.+..+-+++-+++++.||+|||. |+|-++ ..|.+-+.-|.|--+...+.++.. .|....-.. ....
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKST--QipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~V---GY~I 131 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKST--QIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEV---GYTI 131 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCccc--cHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCcee---eeEE
Confidence 4567777778889999999999998 666653 356666666998766665555433 222111000 0000
Q ss_pred HHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHH--HHHHHHHhhCCCC
Q 004900 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY--RKLSSLRNYLPDV 194 (724)
Q Consensus 117 ~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y--~~L~~l~~~~p~~ 194 (724)
-.++. .....+|.|.|.-++.. .+.....+.+.++|||||||.=+= ..+. .-|..+....++.
T Consensus 132 ---RFed~--ts~~TrikymTDG~LLR-----E~l~Dp~LskYsvIIlDEAHERsl-----~TDiLlGlLKki~~~R~~L 196 (674)
T KOG0922|consen 132 ---RFEDS--TSKDTRIKYMTDGMLLR-----EILKDPLLSKYSVIILDEAHERSL-----HTDILLGLLKKILKKRPDL 196 (674)
T ss_pred ---Eeccc--CCCceeEEEecchHHHH-----HHhcCCccccccEEEEechhhhhh-----HHHHHHHHHHHHHhcCCCc
Confidence 00111 11247888888776543 333334456689999999996331 1111 2234455555677
Q ss_pred CEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCC-ceEEEEEe-ccchhhHHHHHHHHHHhcCCceEEEEecccccHH
Q 004900 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRY-KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCD 272 (724)
Q Consensus 195 pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~-ni~~~v~~-~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e 272 (724)
.++.+|||+.-+..... ++ ..+++...+-.-| .+.|.... .+..+..+..+.++-...+.+-+|||....++.+
T Consensus 197 klIimSATlda~kfS~y---F~-~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe 272 (674)
T KOG0922|consen 197 KLIIMSATLDAEKFSEY---FN-NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIE 272 (674)
T ss_pred eEEEEeeeecHHHHHHH---hc-CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHH
Confidence 89999999986644433 22 2344443333333 23332211 1222334444444444456667999999999999
Q ss_pred HHHHHHHhC----C--C--ceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCC---------
Q 004900 273 ELSAYLSAG----G--I--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI--------- 335 (724)
Q Consensus 273 ~La~~L~~~----g--i--~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~--------- 335 (724)
.+++.|.+. + . -+.++||.|+.+++..+.+.--.|.-+|++||++++..|-+++|++||.-+.
T Consensus 273 ~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~ 352 (674)
T KOG0922|consen 273 AACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPR 352 (674)
T ss_pred HHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccc
Confidence 999999774 1 1 2467999999999999888777899999999999999999999999996554
Q ss_pred ---------CCCHHHHHHHHcccCCCCCCCeEEEEEccccHHH
Q 004900 336 ---------PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (724)
Q Consensus 336 ---------P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~ 369 (724)
|-|-.+-.||.|||||.| +|.|+-+|..++...
T Consensus 353 ~g~~~L~v~~ISkasA~QRaGRAGRt~-pGkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 353 TGLDSLIVVPISKASANQRAGRAGRTG-PGKCYRLYTESAYDK 394 (674)
T ss_pred cCccceeEEechHHHHhhhcccCCCCC-CceEEEeeeHHHHhh
Confidence 347889999999999997 999999999887643
No 113
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.76 E-value=1.1e-16 Score=188.49 Aligned_cols=314 Identities=17% Similarity=0.139 Sum_probs=187.8
Q ss_pred CCchHHHHHHHHHHcCC---------CCCCHHHHHHHHHHH----c------CCcEEEEcCCCchHHHHHHHHHH-----
Q 004900 20 LHEKEALVKLLRWHFGH---------AQFRDKQLDAIQAVL----S------GRDCFCLMPTGGGKSMCYQIPAL----- 75 (724)
Q Consensus 20 ~~~~~~l~~~L~~~fG~---------~~lr~~Q~eaI~ail----~------g~dvlv~apTGsGKTl~~~lpal----- 75 (724)
+..++.+++.++...=| .-+|++|..|+..+. . .+..++++|||+|||++....+.
T Consensus 211 ~~~~~~ll~~i~~~~~~~~~~~~~~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~ 290 (667)
T TIGR00348 211 LLKKERLLDFIRNFIIFDKDTGLVTKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL 290 (667)
T ss_pred hcCHHHHHHHHHheEEEECCCCceeeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh
Confidence 34556777777663222 126789999998764 2 25789999999999987543332
Q ss_pred cCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhh
Q 004900 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (724)
Q Consensus 76 ~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~ 155 (724)
....++|||+|..+|..|+.+.+..++..... ...+... +...+.. ....|+++|...+.... ...+.....
T Consensus 291 ~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~~--~~~s~~~---L~~~l~~--~~~~iivtTiQk~~~~~-~~~~~~~~~ 362 (667)
T TIGR00348 291 LKNPKVFFVVDRRELDYQLMKEFQSLQKDCAE--RIESIAE---LKRLLEK--DDGGIIITTIQKFDKKL-KEEEEKFPV 362 (667)
T ss_pred cCCCeEEEEECcHHHHHHHHHHHHhhCCCCCc--ccCCHHH---HHHHHhC--CCCCEEEEEhHHhhhhH-hhhhhccCC
Confidence 24578999999999999999999998753211 1111111 1111222 23568888877665410 011111111
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHH-HHHHhhCCCCCEEEEeecCChhhHHHHHHhhcc-CCCeEeeccCC----C
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKL-SSLRNYLPDVPILALTATAAPKVQKDVMESLCL-QNPLVLKSSFN----R 229 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L-~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l-~~~~vi~~s~~----r 229 (724)
...-.+||+||||+... | .+ ..++..+|+..+++|||||-......-...++. ....+...+.. .
T Consensus 363 ~~~~~lvIvDEaHrs~~-~--------~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~d 433 (667)
T TIGR00348 363 DRKEVVVIFDEAHRSQY-G--------ELAKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRD 433 (667)
T ss_pred CCCCEEEEEEcCccccc-h--------HHHHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhc
Confidence 11112899999998542 2 22 235567899999999999964311111112221 11111111110 0
Q ss_pred ---CceEEEEEeccc------hhh------------------------------------HHHH----HHHHHH---hcC
Q 004900 230 ---PNLFYEVRYKDL------LDD------------------------------------AYAD----LCSVLK---ANG 257 (724)
Q Consensus 230 ---~ni~~~v~~~~~------~~~------------------------------------k~~~----L~~lLk---~~~ 257 (724)
..+.|..+.... .+. .+.. +.+... ...
T Consensus 434 G~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~ 513 (667)
T TIGR00348 434 GLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELF 513 (667)
T ss_pred CCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcc
Confidence 011222111000 000 0011 111111 112
Q ss_pred CceEEEEecccccHHHHHHHHHhC-----CCceeeecCCCCHH---------------------HHHHHHHHhhc-CCce
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDK---------------------ARSSVLDDWIS-SRKQ 310 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~-----gi~v~~~H~~l~~~---------------------eR~~vl~~F~~-g~~~ 310 (724)
+.+++|+|.++..|..+++.|.+. +..+..+++..+.. ....++++|.+ +.++
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 468999999999999999998664 24456666654332 12467888976 7889
Q ss_pred EEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCC
Q 004900 311 VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351 (724)
Q Consensus 311 VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGR 351 (724)
|||.++.+..|+|.|.+..++...+-++. .++|.+||+.|
T Consensus 594 ilIVvdmllTGFDaP~l~tLyldKplk~h-~LlQai~R~nR 633 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLYLDKPLKYH-GLLQAIARTNR 633 (667)
T ss_pred EEEEEcccccccCCCccceEEEecccccc-HHHHHHHHhcc
Confidence 99999999999999999999988876764 58999999999
No 114
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.76 E-value=1.5e-16 Score=192.58 Aligned_cols=167 Identities=14% Similarity=0.132 Sum_probs=109.0
Q ss_pred CCEEEEeecCChh-hHHHHHHhhccCCCeEe---eccCC-CCceEEEEE-ecc-----chhhHH----HHHHHHHHhcCC
Q 004900 194 VPILALTATAAPK-VQKDVMESLCLQNPLVL---KSSFN-RPNLFYEVR-YKD-----LLDDAY----ADLCSVLKANGD 258 (724)
Q Consensus 194 ~pil~LSAT~~~~-v~~di~~~l~l~~~~vi---~~s~~-r~ni~~~v~-~~~-----~~~~k~----~~L~~lLk~~~~ 258 (724)
.++|++|||++.. -...+...+|+.+.... ..+++ ..+....+. ... ..+... ..|.+++... +
T Consensus 596 ~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~-~ 674 (850)
T TIGR01407 596 KSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAIT-S 674 (850)
T ss_pred CeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhc-C
Confidence 3488999999843 24566778888654322 23343 222222111 000 111222 2333344433 4
Q ss_pred ceEEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcc--eEEe
Q 004900 259 TCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR--LVCH 332 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~--~VI~ 332 (724)
+++|||++|.+..+.++..|.. .++. .+..+.. ..|..++++|++|+..||++|+.|.+|||+|+.. .||.
T Consensus 675 g~~LVlftS~~~l~~v~~~L~~~~~~~~~~--~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI 751 (850)
T TIGR01407 675 PKILVLFTSYEMLHMVYDMLNELPEFEGYE--VLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVI 751 (850)
T ss_pred CCEEEEeCCHHHHHHHHHHHhhhccccCce--EEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEE
Confidence 5799999999999999999975 2333 3333333 5788999999999999999999999999999865 6777
Q ss_pred eCCCC------------------------------CHHHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 333 FNIPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 333 ~d~P~------------------------------S~~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
..+|- .+..+.|.+||.-|.....-++++++.
T Consensus 752 ~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD~ 813 (850)
T TIGR01407 752 PRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILDR 813 (850)
T ss_pred eCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEcc
Confidence 77662 123467899999998765555666654
No 115
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=7.1e-18 Score=183.58 Aligned_cols=335 Identities=16% Similarity=0.119 Sum_probs=219.2
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc-----CCCeEEEEcCcHHHHHHHHHHHHHc--
Q 004900 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEK-- 101 (724)
Q Consensus 29 ~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~-----~~~~vLVlsPl~aL~~qqv~~l~~~-- 101 (724)
.+-+.+-.+.+..+|.++|..+-.|+.+++.-.|.+||++||++.+.. .....++++|++++++++.+.+.-.
T Consensus 277 ~~~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~ 356 (1034)
T KOG4150|consen 277 SLLNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVE 356 (1034)
T ss_pred HHHhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEE
Confidence 333335567889999999999999999999999999999999987642 3556799999999998865443210
Q ss_pred CC----ceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc-CCCC
Q 004900 102 GI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS-WGHD 176 (724)
Q Consensus 102 gi----~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~-~G~d 176 (724)
.| .+.+-.+......-...+.. ...+++|..|.++.+...-..+.-.+..-.+.++++||+|...- .|..
T Consensus 357 ~I~~~K~A~V~~~D~~sE~~~~A~~R-----~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~ 431 (1034)
T KOG4150|consen 357 VIKARKSAYVEMSDKLSETTKSALKR-----IGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKAL 431 (1034)
T ss_pred ehhhhhcceeecccCCCchhHHHHHh-----cCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhH
Confidence 00 11111121111111111111 13789999999887655433332222222255789999998753 1111
Q ss_pred ChHHHHHHHHHHhhC---CCCCEEEEeecCChhhHHHHHHhhccCCCeEeec--cCCCCceEEEEEeccc-------hhh
Q 004900 177 FRPSYRKLSSLRNYL---PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS--SFNRPNLFYEVRYKDL-------LDD 244 (724)
Q Consensus 177 Frp~y~~L~~l~~~~---p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~--s~~r~ni~~~v~~~~~-------~~~ 244 (724)
-...+++|..+..-| .+.+++-.+||....++. .....++.....+.. +.... -.+.+..... ...
T Consensus 432 ~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~-~~~~~~~~E~~Li~~DGSPs~~-K~~V~WNP~~~P~~~~~~~~ 509 (1034)
T KOG4150|consen 432 AQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRL-RSELANLSELELVTIDGSPSSE-KLFVLWNPSAPPTSKSEKSS 509 (1034)
T ss_pred HHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHH-HHHhcCCcceEEEEecCCCCcc-ceEEEeCCCCCCcchhhhhh
Confidence 122233444444333 367888889988777653 455556655443332 22221 2222221110 112
Q ss_pred HHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhC----CC----ceeeecCCCCHHHHHHHHHHhhcCCceEEEE
Q 004900 245 AYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAG----GI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (724)
Q Consensus 245 k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~----gi----~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVA 314 (724)
++.....++-+ ..+-++|-||.+|+.|+-+-...++. |- .+..|.||...++|..+...+..|+..-+||
T Consensus 510 ~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIa 589 (1034)
T KOG4150|consen 510 KVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIA 589 (1034)
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEe
Confidence 22222222221 13568999999999998887665542 11 2457999999999999999999999999999
Q ss_pred ccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEc--cccHHHH
Q 004900 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG--MDDRRRM 370 (724)
Q Consensus 315 T~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~--~~D~~~~ 370 (724)
|++++.|||+...+.|++.++|.|+..+.|..|||||..+++.++.+.. +-|...+
T Consensus 590 TNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~PVDQ~Y~ 647 (1034)
T KOG4150|consen 590 TNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLGPVDQYYM 647 (1034)
T ss_pred cchhhhccccccceeEEEccCchhHHHHHHHhccccccCCCceEEEEEeccchhhHhh
Confidence 9999999999999999999999999999999999999999987765543 5554444
No 116
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.6e-16 Score=170.75 Aligned_cols=163 Identities=21% Similarity=0.325 Sum_probs=123.4
Q ss_pred CCEEEEeecCChhhHHHHHHhhc-cCCCeEeeccCCCCceEEEEEecc-chhhHHHHHHHHHHhcCCceEEEEecccccH
Q 004900 194 VPILALTATAAPKVQKDVMESLC-LQNPLVLKSSFNRPNLFYEVRYKD-LLDDAYADLCSVLKANGDTCAIVYCLERTTC 271 (724)
Q Consensus 194 ~pil~LSAT~~~~v~~di~~~l~-l~~~~vi~~s~~r~ni~~~v~~~~-~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~ 271 (724)
.+++.+|||+.+.-.. ..-+ +-.-++-..+.-.|. ..+++.. ..++.+..+...++ .+.+++|-+-|++.+
T Consensus 387 ~q~i~VSATPg~~E~e---~s~~~vveQiIRPTGLlDP~--ievRp~~~QvdDL~~EI~~r~~--~~eRvLVTtLTKkmA 459 (663)
T COG0556 387 PQTIYVSATPGDYELE---QSGGNVVEQIIRPTGLLDPE--IEVRPTKGQVDDLLSEIRKRVA--KNERVLVTTLTKKMA 459 (663)
T ss_pred CCEEEEECCCChHHHH---hccCceeEEeecCCCCCCCc--eeeecCCCcHHHHHHHHHHHHh--cCCeEEEEeehHHHH
Confidence 4689999999876433 1110 000011111222232 2333332 23444555544443 357999999999999
Q ss_pred HHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCC-----CCHHHHHHHH
Q 004900 272 DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIP-----KSMEAFYQES 346 (724)
Q Consensus 272 e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P-----~S~~~yiQr~ 346 (724)
+.|.++|.+.|+++..+|++...-+|.+++++++.|+++|||.-+.+-.|+|+|.|.+|..+|.. .|-.+++|-+
T Consensus 460 EdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtI 539 (663)
T COG0556 460 EDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTI 539 (663)
T ss_pred HHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998854 5889999999
Q ss_pred cccCCCCCCCeEEEEEcc
Q 004900 347 GRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 347 GRAGRdG~~g~~il~~~~ 364 (724)
|||.|. -.|.+|+|.+.
T Consensus 540 GRAARN-~~GkvIlYAD~ 556 (663)
T COG0556 540 GRAARN-VNGKVILYADK 556 (663)
T ss_pred HHHhhc-cCCeEEEEchh
Confidence 999997 36788888764
No 117
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.74 E-value=1.5e-16 Score=182.32 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=99.4
Q ss_pred CCHHHHHHHHHHHcCCcEEEEcCCCchHHHH--HHHHHHcC---CCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccch
Q 004900 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMC--YQIPALAK---PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (724)
Q Consensus 39 lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~--~~lpal~~---~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~ 113 (724)
+-.||.+.+..+-.+..++++|||.+|||.+ |.+-.+.+ .+++|.+.|+++|++|....+..+.-... ...+.+
T Consensus 512 Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t-~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKT-FLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCc-cccchh
Confidence 4569999999999999999999999999985 45555554 68999999999999998777665321111 111111
Q ss_pred HHHHHHHHhhhhcCCCCccEEEeCccccc----ChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHh
Q 004900 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTA----TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (724)
Q Consensus 114 ~~~~~~i~~~l~~~~~~~~il~~TPE~i~----T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~ 189 (724)
.-. ....+..-+...++|+++.||.+. +|... ... ...++++|+||+|++.....+ .-..++.
T Consensus 591 l~g--~ltqEYsinp~nCQVLITvPecleslLlspp~~---q~~--cerIRyiIfDEVH~iG~~ed~-----l~~Eqll- 657 (1330)
T KOG0949|consen 591 LLG--DLTQEYSINPWNCQVLITVPECLESLLLSPPHH---QKF--CERIRYIIFDEVHLIGNEEDG-----LLWEQLL- 657 (1330)
T ss_pred hHh--hhhHHhcCCchhceEEEEchHHHHHHhcCchhh---hhh--hhcceEEEechhhhccccccc-----hHHHHHH-
Confidence 111 111112222335899999999543 32111 111 233789999999999774322 1111122
Q ss_pred hCCCCCEEEEeecCChh
Q 004900 190 YLPDVPILALTATAAPK 206 (724)
Q Consensus 190 ~~p~~pil~LSAT~~~~ 206 (724)
.+-.+|++++|||..+.
T Consensus 658 ~li~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 658 LLIPCPFLVLSATIGNP 674 (1330)
T ss_pred HhcCCCeeEEecccCCH
Confidence 22368999999997764
No 118
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.73 E-value=1.1e-15 Score=179.16 Aligned_cols=323 Identities=20% Similarity=0.175 Sum_probs=212.1
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++..|.. +++.|.-.--.+. +--|+.|.||.|||+++.+|++. .+..+-|++|+--|+.+.++.+..
T Consensus 71 vrEa~~R~lGm~-~ydVQliGg~~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 71 AREAGKRVMGMR-HFDVQLIGGMTLH--EGKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred HHHHHHHHhCCC-cchhHHHhhhHhc--cCccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 344566677854 4567665444444 44599999999999999999874 578899999999999998888776
Q ss_pred --cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH---hhhhcCCccEEEEccccccccC--
Q 004900 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW-- 173 (724)
Q Consensus 101 --~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~---~~~~~~~l~lIVIDEAH~l~~~-- 173 (724)
+|+.+.++.+......+...+. .+|+|+|.-.+.-..+...+. ...-+..+.++||||+|.++=.
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y~--------~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEA 219 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAYA--------ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEA 219 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHhc--------CCEEEEcccccccchhhccceechhhhcccccceeEechhhheecccc
Confidence 5899999988888887776664 789999987763322221111 1112356899999999998520
Q ss_pred -------C--CCChHHHHHHHHHHhhC--------------------CCCC-----------------------------
Q 004900 174 -------G--HDFRPSYRKLSSLRNYL--------------------PDVP----------------------------- 195 (724)
Q Consensus 174 -------G--~dFrp~y~~L~~l~~~~--------------------p~~p----------------------------- 195 (724)
| ......|..+..+...+ ....
T Consensus 220 rtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly 299 (913)
T PRK13103 220 RTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLY 299 (913)
T ss_pred CCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhcc
Confidence 1 01111222222111111 0001
Q ss_pred --------------------------------------------------------------------------------
Q 004900 196 -------------------------------------------------------------------------------- 195 (724)
Q Consensus 196 -------------------------------------------------------------------------------- 195 (724)
T Consensus 300 ~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~Qn 379 (913)
T PRK13103 300 SAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQN 379 (913)
T ss_pred ChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHH
Confidence
Q ss_pred -------EEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEE---EeccchhhHHHHHHHHHHh--cCCceEEE
Q 004900 196 -------ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV---RYKDLLDDAYADLCSVLKA--NGDTCAIV 263 (724)
Q Consensus 196 -------il~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v---~~~~~~~~k~~~L~~lLk~--~~~~~~II 263 (724)
+.+||+|+.... .++.+.. +-.++..+.++|.+.-.. .+.. ...++..+.+-++. ..+.|+||
T Consensus 380 fFr~Y~kLsGMTGTa~te~-~Ef~~iY---~l~Vv~IPTnkP~~R~D~~d~vy~t-~~eK~~Ai~~ei~~~~~~GrPVLV 454 (913)
T PRK13103 380 YFRLYNKLSGMTGTADTEA-FEFRQIY---GLDVVVIPPNKPLARKDFNDLVYLT-AEEKYAAIITDIKECMALGRPVLV 454 (913)
T ss_pred HHHhcchhccCCCCCHHHH-HHHHHHh---CCCEEECCCCCCcccccCCCeEEcC-HHHHHHHHHHHHHHHHhCCCCEEE
Confidence 333444433221 1222222 122333444555442211 1121 24566666655543 35789999
Q ss_pred EecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcC-CceEEEEccccccccCCC-----------------
Q 004900 264 YCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRK----------------- 325 (724)
Q Consensus 264 f~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g-~~~VLVAT~a~g~GIDip----------------- 325 (724)
-|.|++..+.|+..|...|++...+++.....+-.-|-+ .| ...|.|||+.+|||.|+.
T Consensus 455 GT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIa~---AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~ 531 (913)
T PRK13103 455 GTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQ---AGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTP 531 (913)
T ss_pred EeCCHHHHHHHHHHHHHcCCcHHHhccccchhHHHHHHc---CCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhH
Confidence 999999999999999999998877777654443332222 34 345999999999999984
Q ss_pred ---------------Cc-----ceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 326 ---------------DV-----RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 326 ---------------~V-----~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
.| =+||-...+.|..---|-.|||||.|.||.+..|++.+|-
T Consensus 532 ~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED~ 593 (913)
T PRK13103 532 EQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDS 593 (913)
T ss_pred HHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCcH
Confidence 22 2788899999999999999999999999999999987764
No 119
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.72 E-value=7.5e-17 Score=149.63 Aligned_cols=118 Identities=30% Similarity=0.477 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHhc--CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccc
Q 004900 244 DAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (724)
Q Consensus 244 ~k~~~L~~lLk~~--~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~G 321 (724)
.+...+..++... .+.++||||+++..++.+++.|.+.+..+..+||+++..+|..+++.|.+|...||++|.++++|
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G 91 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARG 91 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcC
Confidence 5677777777765 36789999999999999999999888999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEE
Q 004900 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (724)
Q Consensus 322 IDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~ 361 (724)
+|+|++++||++++|++...|.|++||++|.|+.+.+++|
T Consensus 92 ~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 92 IDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999998887764
No 120
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.70 E-value=1.6e-16 Score=181.84 Aligned_cols=293 Identities=20% Similarity=0.232 Sum_probs=177.8
Q ss_pred CCCCCHHHHHHHHHHH----cC-CcEEEEcCCCchHHHHH--HHHHHcC---CCeEEEEcCcHHHHHHHHHHHHHcCCce
Q 004900 36 HAQFRDKQLDAIQAVL----SG-RDCFCLMPTGGGKSMCY--QIPALAK---PGIVLVVSPLIALMENQVIGLKEKGIAG 105 (724)
Q Consensus 36 ~~~lr~~Q~eaI~ail----~g-~dvlv~apTGsGKTl~~--~lpal~~---~~~vLVlsPl~aL~~qqv~~l~~~gi~~ 105 (724)
-..+|.+|..||..+. .| +.+|++|.||+|||.++ ++..|.+ -+++|+|+-.++|+.|.+..+..+....
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 3468999999997765 44 46999999999999643 2344443 5689999999999999998888864432
Q ss_pred eeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHH-HHHhhhhcCCccEEEEccccccccCCCCChHHHHHH
Q 004900 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS-KLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (724)
Q Consensus 106 ~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~-~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L 184 (724)
...+.... ..+..+.+|.+.|...+....-.. .-......+.+++|||||||+= .|..-
T Consensus 243 ~~~n~i~~-----------~~~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRg---------i~~~~ 302 (875)
T COG4096 243 TKMNKIED-----------KKGDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRG---------IYSEW 302 (875)
T ss_pred cceeeeec-----------ccCCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhh---------HHhhh
Confidence 22211110 111224677777765443221111 1111223345899999999963 33443
Q ss_pred HHHHhhCCCCCEEEEeecCChhhHHHHHHhh-ccC----------------CCeE--eeccCCCCceE------------
Q 004900 185 SSLRNYLPDVPILALTATAAPKVQKDVMESL-CLQ----------------NPLV--LKSSFNRPNLF------------ 233 (724)
Q Consensus 185 ~~l~~~~p~~pil~LSAT~~~~v~~di~~~l-~l~----------------~~~v--i~~s~~r~ni~------------ 233 (724)
..+...+... .+++|||+.......-...+ |.+ .+.+ +...+.+.-+.
T Consensus 303 ~~I~dYFdA~-~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g 381 (875)
T COG4096 303 SSILDYFDAA-TQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQG 381 (875)
T ss_pred HHHHHHHHHH-HHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhc
Confidence 4444444322 34559998775443333333 111 0111 11111111111
Q ss_pred ---------EEEEe-------ccchhhHHHHHHHHHHh--cC--CceEEEEecccccHHHHHHHHHhC-----CCceeee
Q 004900 234 ---------YEVRY-------KDLLDDAYADLCSVLKA--NG--DTCAIVYCLERTTCDELSAYLSAG-----GISCAAY 288 (724)
Q Consensus 234 ---------~~v~~-------~~~~~~k~~~L~~lLk~--~~--~~~~IIf~~sr~~~e~La~~L~~~-----gi~v~~~ 288 (724)
|.... ....+.....+.++|+. .+ .+++||||.+..+|+.+...|... |--+..+
T Consensus 382 ~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~I 461 (875)
T COG4096 382 EAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKI 461 (875)
T ss_pred cccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEE
Confidence 11100 00011123344555655 22 468999999999999999999764 2224445
Q ss_pred cCCCCHHHHHHHHHHhhc--CCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCC
Q 004900 289 HAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351 (724)
Q Consensus 289 H~~l~~~eR~~vl~~F~~--g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGR 351 (724)
.++-.... ..++.|.. .-.+|.|+.+.+..|||+|.|..++.+..-.|..-|.|++||+-|
T Consensus 462 T~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTR 524 (875)
T COG4096 462 TGDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred eccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCccc
Confidence 55433322 33455554 335688889999999999999999999999999999999999988
No 121
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=9.7e-16 Score=167.78 Aligned_cols=280 Identities=19% Similarity=0.248 Sum_probs=186.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccE
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRL 133 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~i 133 (724)
+-++-++||.+|||--++ --+......++..|++.|+.+.++++++.||++..+.+.. +... ... ....+.
T Consensus 192 kIi~H~GPTNSGKTy~AL-qrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE----~~~~---~~~-~~~a~h 262 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL-QRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEE----RRFV---LDN-GNPAQH 262 (700)
T ss_pred eEEEEeCCCCCchhHHHH-HHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccce----eeec---CCC-CCcccc
Confidence 345678999999997532 2334456789999999999999999999999998776432 1111 111 224678
Q ss_pred EEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccC--CCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHH
Q 004900 134 LYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW--GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (724)
Q Consensus 134 l~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~--G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di 211 (724)
+-+|-||+.+.. .+++.||||.+.|.+- |+.+-..+ |+-.... + -|. -.|.+...+
T Consensus 263 vScTVEM~sv~~------------~yeVAViDEIQmm~Dp~RGwAWTrAL--LGl~AdE---i---HLC--GepsvldlV 320 (700)
T KOG0953|consen 263 VSCTVEMVSVNT------------PYEVAVIDEIQMMRDPSRGWAWTRAL--LGLAADE---I---HLC--GEPSVLDLV 320 (700)
T ss_pred eEEEEEEeecCC------------ceEEEEehhHHhhcCcccchHHHHHH--Hhhhhhh---h---hcc--CCchHHHHH
Confidence 888999887643 2789999999999763 32221111 1111111 0 011 123444444
Q ss_pred HHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhc-CCceEEEEecccccHHHHHHHHHhCCCc-eeeec
Q 004900 212 MESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYH 289 (724)
Q Consensus 212 ~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~-~~~~~IIf~~sr~~~e~La~~L~~~gi~-v~~~H 289 (724)
.+.+.+....+....+.|-+-.. ..+.+..-++.. ++.| |.|-|++..-.+...+.+.|.. ++.++
T Consensus 321 ~~i~k~TGd~vev~~YeRl~pL~----------v~~~~~~sl~nlk~GDC--vV~FSkk~I~~~k~kIE~~g~~k~aVIY 388 (700)
T KOG0953|consen 321 RKILKMTGDDVEVREYERLSPLV----------VEETALGSLSNLKPGDC--VVAFSKKDIFTVKKKIEKAGNHKCAVIY 388 (700)
T ss_pred HHHHhhcCCeeEEEeecccCcce----------ehhhhhhhhccCCCCCe--EEEeehhhHHHHHHHHHHhcCcceEEEe
Confidence 44444433333322222221110 011222223333 3343 4456788888999999888765 99999
Q ss_pred CCCCHHHHHHHHHHhhc--CCceEEEEccccccccCCCCcceEEeeCCC---------CCHHHHHHHHcccCCCCC--CC
Q 004900 290 AGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNIP---------KSMEAFYQESGRAGRDQL--PS 356 (724)
Q Consensus 290 ~~l~~~eR~~vl~~F~~--g~~~VLVAT~a~g~GIDip~V~~VI~~d~P---------~S~~~yiQr~GRAGRdG~--~g 356 (724)
|+++++.|.+.-..|.+ ++++|||||||+|||+|+ +|+.||.+++- -+..+..|..|||||.|. +.
T Consensus 389 GsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~ 467 (700)
T KOG0953|consen 389 GSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQ 467 (700)
T ss_pred cCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcC
Confidence 99999999999999997 999999999999999998 79999999864 367899999999999874 33
Q ss_pred eEEEEEccccHHHHHHHHHhc
Q 004900 357 KSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 357 ~~il~~~~~D~~~~~~i~~~~ 377 (724)
-.++-+..+|...++.+++..
T Consensus 468 G~vTtl~~eDL~~L~~~l~~p 488 (700)
T KOG0953|consen 468 GEVTTLHSEDLKLLKRILKRP 488 (700)
T ss_pred ceEEEeeHhhHHHHHHHHhCC
Confidence 344555678888888888744
No 122
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.70 E-value=1.2e-15 Score=169.51 Aligned_cols=315 Identities=18% Similarity=0.218 Sum_probs=200.4
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCe-EEEEcCcHHHHHHHHHHHH
Q 004900 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGI-VLVVSPLIALMENQVIGLK 99 (724)
Q Consensus 27 ~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~-vLVlsPl~aL~~qqv~~l~ 99 (724)
...+++.-..-...++-.+.+.++.+++-+|+.+.||+|||. |||-.+ .++. +=+.-|.|.-+.....++.
T Consensus 254 ~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA 331 (902)
T KOG0923|consen 254 RESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVA 331 (902)
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhcccccCCceEeecCcchHHHHHHHHHHH
Confidence 344444333334456777889999899999999999999998 777654 3444 5555598877776665544
Q ss_pred H-cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCCh
Q 004900 100 E-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (724)
Q Consensus 100 ~-~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFr 178 (724)
. .|++..--.+ ... -+++..+ ....+-|.|..++ +..+..-..+...++|||||||.-.- ..|
T Consensus 332 ~EMgvkLG~eVG---YsI---RFEdcTS--ekTvlKYMTDGmL-----lREfL~epdLasYSViiiDEAHERTL-~TD-- 395 (902)
T KOG0923|consen 332 EEMGVKLGHEVG---YSI---RFEDCTS--EKTVLKYMTDGML-----LREFLSEPDLASYSVIIVDEAHERTL-HTD-- 395 (902)
T ss_pred HHhCcccccccc---eEE---EeccccC--cceeeeeecchhH-----HHHHhccccccceeEEEeehhhhhhh-hhh--
Confidence 3 5544311100 000 0111111 1244555555543 33455555667789999999996321 001
Q ss_pred HHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCC--CceEEEEEec-cchhhHHHHHHHHHHh
Q 004900 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR--PNLFYEVRYK-DLLDDAYADLCSVLKA 255 (724)
Q Consensus 179 p~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r--~ni~~~v~~~-~~~~~k~~~L~~lLk~ 255 (724)
-.+.-+..+.+..|+..++..|||+.-+-.. .+ +.+..++..+-.| -.++|.-.+. +..+..+..+.++-..
T Consensus 396 ILfgLvKDIar~RpdLKllIsSAT~DAekFS---~f--FDdapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~t 470 (902)
T KOG0923|consen 396 ILFGLVKDIARFRPDLKLLISSATMDAEKFS---AF--FDDAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLT 470 (902)
T ss_pred HHHHHHHHHHhhCCcceEEeeccccCHHHHH---Hh--ccCCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEec
Confidence 1122344555566899999999998765332 32 3344444443332 2233332221 1111222222222222
Q ss_pred cCCceEEEEecccccHHHHHHHHHh----CC-----CceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCC
Q 004900 256 NGDTCAIVYCLERTTCDELSAYLSA----GG-----ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (724)
Q Consensus 256 ~~~~~~IIf~~sr~~~e~La~~L~~----~g-----i~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~ 326 (724)
.+.+-+|||..-.++.+.....|.+ .| +-+.++|++++.+.+..|.+---.|--+|++||+++...|-+++
T Consensus 471 qp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 471 QPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred cCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecC
Confidence 3456799999888877776666654 23 44789999999999999988888899999999999999999999
Q ss_pred cceEEeeCC------------------CCCHHHHHHHHcccCCCCCCCeEEEEEccc
Q 004900 327 VRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (724)
Q Consensus 327 V~~VI~~d~------------------P~S~~~yiQr~GRAGRdG~~g~~il~~~~~ 365 (724)
|.+||.-+. |-|-.+-.||.|||||.| ||.|+-+|+.-
T Consensus 551 I~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCfRLYt~~ 606 (902)
T KOG0923|consen 551 IKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCFRLYTAW 606 (902)
T ss_pred eEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceEEeechh
Confidence 999996554 336678899999999998 99999999853
No 123
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=6.1e-15 Score=171.33 Aligned_cols=323 Identities=18% Similarity=0.157 Sum_probs=214.7
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHH---
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK--- 99 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~--- 99 (724)
+..+.++.+|.. +++.|.-..-.+..| -|+.|.||-||||+..+|+.. .+..|-||+..--|+.--.+.+.
T Consensus 67 vREA~~R~lG~r-~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 67 AREATKRVLGKR-PYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred HHHHHHHHhCCC-cCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhcCCceEEEecchhhhhhhHHHHHHHH
Confidence 445667777875 668887766666566 489999999999999999864 46677788888888765444433
Q ss_pred -HcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH---HhhhhcCCccEEEEccccccccC--
Q 004900 100 -EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSW-- 173 (724)
Q Consensus 100 -~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L---~~~~~~~~l~lIVIDEAH~l~~~-- 173 (724)
-+|+.+.+.........+...+. .+|.|+|.--+.-......+ ....-++.+.+.||||+|.++=.
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~aY~--------~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEA 215 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREAYA--------CDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEA 215 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHhcc--------CCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeeccc
Confidence 37999998888777777666553 67889887655433222222 11122355788999999887510
Q ss_pred -------C--CCChHHHHHHHHHHhhC-----------------------------------------------------
Q 004900 174 -------G--HDFRPSYRKLSSLRNYL----------------------------------------------------- 191 (724)
Q Consensus 174 -------G--~dFrp~y~~L~~l~~~~----------------------------------------------------- 191 (724)
| .+.-..|..+..+...+
T Consensus 216 rTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~ 295 (925)
T PRK12903 216 KTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHK 295 (925)
T ss_pred CCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHH
Confidence 0 00001111111111100
Q ss_pred --------------------------C----------------C----------------------CCEEEEeecCChhh
Q 004900 192 --------------------------P----------------D----------------------VPILALTATAAPKV 207 (724)
Q Consensus 192 --------------------------p----------------~----------------------~pil~LSAT~~~~v 207 (724)
+ + ..+.+||+|+..+.
T Consensus 296 lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~ 375 (925)
T PRK12903 296 VMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEE 375 (925)
T ss_pred HHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHH
Confidence 0 0 01556677765432
Q ss_pred HHHHHHhhccCCCeEeeccCCCCceEEEEE---eccchhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCC
Q 004900 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVR---YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGG 282 (724)
Q Consensus 208 ~~di~~~l~l~~~~vi~~s~~r~ni~~~v~---~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~g 282 (724)
.++.+.. +-.++..+.++|.+..... +. ....++..+.+.+.. ..+.|+||.|.|++..+.|+..|.+.|
T Consensus 376 -~Ef~~iY---~l~Vv~IPTnkP~~R~D~~d~iy~-t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~g 450 (925)
T PRK12903 376 -QEFIDIY---NMRVNVVPTNKPVIRKDEPDSIFG-TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEAN 450 (925)
T ss_pred -HHHHHHh---CCCEEECCCCCCeeeeeCCCcEEE-cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC
Confidence 3333333 3345666777776654421 12 224556666555443 357799999999999999999999999
Q ss_pred CceeeecCCCCHHHHHHHHHHhhcC-CceEEEEccccccccCCCCcc--------eEEeeCCCCCHHHHHHHHcccCCCC
Q 004900 283 ISCAAYHAGLNDKARSSVLDDWISS-RKQVVVATVAFGMGIDRKDVR--------LVCHFNIPKSMEAFYQESGRAGRDQ 353 (724)
Q Consensus 283 i~v~~~H~~l~~~eR~~vl~~F~~g-~~~VLVAT~a~g~GIDip~V~--------~VI~~d~P~S~~~yiQr~GRAGRdG 353 (724)
++...+++.-...+-.-|- ..| ...|.|||+.+|||.|+.--. +||....|.|..---|..||+||.|
T Consensus 451 i~h~vLNAk~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQG 527 (925)
T PRK12903 451 IPHTVLNAKQNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQG 527 (925)
T ss_pred CCceeecccchhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCC
Confidence 9988888864433322222 234 356999999999999986322 8999999999998999999999999
Q ss_pred CCCeEEEEEccccH
Q 004900 354 LPSKSLLYYGMDDR 367 (724)
Q Consensus 354 ~~g~~il~~~~~D~ 367 (724)
.||.+..|++-+|-
T Consensus 528 DpGss~f~lSLeD~ 541 (925)
T PRK12903 528 DVGESRFFISLDDQ 541 (925)
T ss_pred CCCcceEEEecchH
Confidence 99999999987764
No 124
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.69 E-value=8.1e-16 Score=174.13 Aligned_cols=309 Identities=18% Similarity=0.154 Sum_probs=212.8
Q ss_pred CCCCHHHHHHHHHHHc----CCcEEEEcCCCchHHH--HHHHHHHcC----CCeEEEEcCcHHHHHHHHHHHHHcCC--c
Q 004900 37 AQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSM--CYQIPALAK----PGIVLVVSPLIALMENQVIGLKEKGI--A 104 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~----g~dvlv~apTGsGKTl--~~~lpal~~----~~~vLVlsPl~aL~~qqv~~l~~~gi--~ 104 (724)
..+.++|+++++.+.+ +.-.|+--.+|-|||+ +..|.+|+. .+.+|||||. .+|.||+.+|..+.. .
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~~r 282 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPPFR 282 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcceE
Confidence 4678999999988763 3456888899999996 334555554 3689999998 788999999999764 4
Q ss_pred eeeecccchHHH---------HHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCC
Q 004900 105 GEFLSSTQTMQV---------KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (724)
Q Consensus 105 ~~~l~s~~~~~~---------~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~ 175 (724)
+.++++..+... +..+... ...+.-.|+++|.+.+...+ .......++++|+||.|.|-.-.
T Consensus 283 v~ilh~t~s~~r~~~~~~~~~~~~~L~r--~~~~~~~ilitty~~~r~~~------d~l~~~~W~y~ILDEGH~IrNpn- 353 (923)
T KOG0387|consen 283 VFILHGTGSGARYDASHSSHKKDKLLIR--KVATDGGILITTYDGFRIQG------DDLLGILWDYVILDEGHRIRNPN- 353 (923)
T ss_pred EEEEecCCcccccccchhhhhhhhhhee--eecccCcEEEEehhhhcccC------cccccccccEEEecCcccccCCc-
Confidence 556665544211 1111111 11122346666666544322 22223448999999999997654
Q ss_pred CChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEe------ecc-----------------------
Q 004900 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL------KSS----------------------- 226 (724)
Q Consensus 176 dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi------~~s----------------------- 226 (724)
..+......++....+.||+|+-.+-+.+++..+.+..|-.+ ...
T Consensus 354 ------s~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~ayk 427 (923)
T KOG0387|consen 354 ------SKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYK 427 (923)
T ss_pred ------cHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHH
Confidence 345555566677889999999876655555544332221100 000
Q ss_pred ---------------------------------------------------------------------------CCCCc
Q 004900 227 ---------------------------------------------------------------------------FNRPN 231 (724)
Q Consensus 227 ---------------------------------------------------------------------------~~r~n 231 (724)
.+.|.
T Consensus 428 ca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPd 507 (923)
T KOG0387|consen 428 CAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPD 507 (923)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcc
Confidence 01111
Q ss_pred eEEEE-----Eeccc-----hhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHH-hCCCceeeecCCCCHHHHH
Q 004900 232 LFYEV-----RYKDL-----LDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLS-AGGISCAAYHAGLNDKARS 298 (724)
Q Consensus 232 i~~~v-----~~~~~-----~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~-~~gi~v~~~H~~l~~~eR~ 298 (724)
++..- ...+. ...+.+.+..+|+. ..+.++|+|..++....-|...|. ..|+.+.-+.|..+...|.
T Consensus 508 ll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~ 587 (923)
T KOG0387|consen 508 LLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQ 587 (923)
T ss_pred cccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhh
Confidence 11000 00000 01244445555543 234589999999999999999999 5899999999999999999
Q ss_pred HHHHHhhcCCc--eEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEE
Q 004900 299 SVLDDWISSRK--QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (724)
Q Consensus 299 ~vl~~F~~g~~--~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~ 361 (724)
.++++|.+++. ..|++|.+.|-|+|+-..+-||.||+.+++.+-.|..-||-|-|+...+++|
T Consensus 588 ~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VY 652 (923)
T KOG0387|consen 588 KLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVY 652 (923)
T ss_pred HHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEE
Confidence 99999998764 3678999999999999999999999999999999999999999999888777
No 125
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.69 E-value=1.1e-15 Score=179.50 Aligned_cols=310 Identities=20% Similarity=0.228 Sum_probs=222.6
Q ss_pred CCCCHHHHHHHHHHH----cCCcEEEEcCCCchHHH---HHHHHHH---cCCCeEEEEcCcHHHHHHHHHHHHH-cCCce
Q 004900 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSM---CYQIPAL---AKPGIVLVVSPLIALMENQVIGLKE-KGIAG 105 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail----~g~dvlv~apTGsGKTl---~~~lpal---~~~~~vLVlsPl~aL~~qqv~~l~~-~gi~~ 105 (724)
.++|.+|.+.++.++ +++++|+.-..|-|||+ +|+-.+. .-.|..|||+|+-.+ ..|.+.+.. ...++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWTDMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHhhhce
Confidence 579999999998876 67899999999999995 4443333 346889999999665 566766665 36777
Q ss_pred eeecccchHHHHHHHHhhhhcCC---CCccEEEeCcccccCh-hHHHHHHhhhhcCCccEEEEccccccccCCCCChHHH
Q 004900 106 EFLSSTQTMQVKTKIYEDLDSGK---PSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (724)
Q Consensus 106 ~~l~s~~~~~~~~~i~~~l~~~~---~~~~il~~TPE~i~T~-~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y 181 (724)
+++++..........+....... -.++++++|.|++... .++. . -.+.+++|||||++..-.
T Consensus 448 i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~---~----i~w~~~~vDeahrLkN~~------- 513 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELS---K----IPWRYLLVDEAHRLKNDE------- 513 (1373)
T ss_pred eeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHhhhc---c----CCcceeeecHHhhcCchH-------
Confidence 77877776665555555443331 2478999999987543 2222 2 237899999999997532
Q ss_pred HHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc------C----------------------------
Q 004900 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------F---------------------------- 227 (724)
Q Consensus 182 ~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s------~---------------------------- 227 (724)
..|-..+..+.---.+++|+|+-.+...+++..+++..|.-+... +
T Consensus 514 ~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdve 593 (1373)
T KOG0384|consen 514 SKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVE 593 (1373)
T ss_pred HHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhc
Confidence 222223344444557999999999888888888776655433210 0
Q ss_pred ----CCCceEEEEEe-----------------------------------------------ccchh---hHH------H
Q 004900 228 ----NRPNLFYEVRY-----------------------------------------------KDLLD---DAY------A 247 (724)
Q Consensus 228 ----~r~ni~~~v~~-----------------------------------------------~~~~~---~k~------~ 247 (724)
..+...+.|.. ..... ..+ .
T Consensus 594 kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~ 673 (1373)
T KOG0384|consen 594 KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDE 673 (1373)
T ss_pred cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHH
Confidence 00011111110 00000 001 1
Q ss_pred HHHHHHHh---------------cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhc---CCc
Q 004900 248 DLCSVLKA---------------NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRK 309 (724)
Q Consensus 248 ~L~~lLk~---------------~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~---g~~ 309 (724)
.|..++.. .++.++|||-.-+...+-|+++|..+|++.--+.|.+..+.|.+.++.|.. ...
T Consensus 674 ~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 674 ALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 22222211 246789999999999999999999999999999999999999999999984 556
Q ss_pred eEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEE
Q 004900 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (724)
Q Consensus 310 ~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~ 361 (724)
..|+||.|.|-|||+...+.||.||..+++.+-+|...||.|-|+...+-+|
T Consensus 754 vFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVY 805 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVY 805 (1373)
T ss_pred EEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEE
Confidence 7999999999999999999999999999999999999999999998876555
No 126
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.68 E-value=9.3e-17 Score=136.92 Aligned_cols=78 Identities=35% Similarity=0.520 Sum_probs=75.8
Q ss_pred HHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCC
Q 004900 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (724)
Q Consensus 276 ~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG 353 (724)
++|...|+.+..+||+++..+|..+++.|.+++..|||||+++++|||+|++++||++++|+++..|.|++||+||.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 368889999999999999999999999999999999999999999999999999999999999999999999999987
No 127
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.67 E-value=1.4e-14 Score=173.82 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=103.7
Q ss_pred CEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEe--cc-----chhhHHHHHHHHHHh--cCCceEEEEe
Q 004900 195 PILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRY--KD-----LLDDAYADLCSVLKA--NGDTCAIVYC 265 (724)
Q Consensus 195 pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~--~~-----~~~~k~~~L~~lLk~--~~~~~~IIf~ 265 (724)
++|++|||++-.-..++...+|+........+++..+-...+.. .. ..+.-.+.+.+.+.. ..+++++|++
T Consensus 575 ~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~LVLF 654 (820)
T PRK07246 575 KTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTETSDEVYAEEIAKRLEELKQLQQPILVLF 654 (820)
T ss_pred eEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 57899999962111236778888654333222222111111111 11 111222233332211 2346799999
Q ss_pred cccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCC--CcceEEeeCCCC------
Q 004900 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--DVRLVCHFNIPK------ 337 (724)
Q Consensus 266 ~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip--~V~~VI~~d~P~------ 337 (724)
+|.+..+.++..|....+.+ ...|.-. .+..++++|++++..||++|..|.+|||+| +...||...+|-
T Consensus 655 tS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP 731 (820)
T PRK07246 655 NSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDP 731 (820)
T ss_pred CcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCH
Confidence 99999999999997655444 3334222 245689999999889999999999999997 355667777662
Q ss_pred ------------------------CHHHHHHHHcccCCCCCCCeEEEEEccc
Q 004900 338 ------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (724)
Q Consensus 338 ------------------------S~~~yiQr~GRAGRdG~~g~~il~~~~~ 365 (724)
-+-.+.|.+||.-|....--++++++..
T Consensus 732 ~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~R 783 (820)
T PRK07246 732 FVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDRR 783 (820)
T ss_pred HHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECCc
Confidence 1235689999999987644456666543
No 128
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.67 E-value=9.4e-15 Score=169.34 Aligned_cols=309 Identities=19% Similarity=0.124 Sum_probs=192.2
Q ss_pred CCCHHHHHHHHHHHc---C-------CcEEEEcCCCchHHHH--HHHHHHcC---C-----CeEEEEcCcHHHHHHHHHH
Q 004900 38 QFRDKQLDAIQAVLS---G-------RDCFCLMPTGGGKSMC--YQIPALAK---P-----GIVLVVSPLIALMENQVIG 97 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~---g-------~dvlv~apTGsGKTl~--~~lpal~~---~-----~~vLVlsPl~aL~~qqv~~ 97 (724)
.++|+|.+++..+-+ | .-+|+.-..|+|||+- .+++.+++ . .+.|||+|. +|+..|..+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 589999999987642 2 2366667899999973 33455543 2 578999998 888999999
Q ss_pred HHHcCCc----eeeecccchH--HHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 98 LKEKGIA----GEFLSSTQTM--QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 98 l~~~gi~----~~~l~s~~~~--~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
|.++.+. ...+.+.... -....+.. +. --.+.+|..+.+..-+....+......++++|.||.|.+-
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~-~~------~~~~~~~vli~sye~~~~~~~~il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILF-LG------YKQFTTPVLIISYETASDYCRKILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHH-hh------hhheeEEEEeccHHHHHHHHHHHhcCCCCeEEECCCCCcc
Confidence 9997653 1122222111 00000110 00 1123344444443333333334445669999999999975
Q ss_pred cCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc------CC-----------------
Q 004900 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN----------------- 228 (724)
Q Consensus 172 ~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s------~~----------------- 228 (724)
.-. ..+-..+..+.-...|+||+|+-.+...++...+++-+|.++... +.
T Consensus 390 N~~-------s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~ 462 (776)
T KOG0390|consen 390 NSD-------SLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRE 462 (776)
T ss_pred chh-------hHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhh
Confidence 422 222223333334558999999998888888888887776544210 00
Q ss_pred ---------------------------CCceEEEEEeccc---hhhHHHH------------------------------
Q 004900 229 ---------------------------RPNLFYEVRYKDL---LDDAYAD------------------------------ 248 (724)
Q Consensus 229 ---------------------------r~ni~~~v~~~~~---~~~k~~~------------------------------ 248 (724)
.|..+-.+..... ....+..
T Consensus 463 ~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L 542 (776)
T KOG0390|consen 463 REERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSL 542 (776)
T ss_pred hHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHh
Confidence 0111111111000 0011111
Q ss_pred ----------------------------------------HHHHHHhcCCceEE---EEecccccHHHHHH-HHHhCCCc
Q 004900 249 ----------------------------------------LCSVLKANGDTCAI---VYCLERTTCDELSA-YLSAGGIS 284 (724)
Q Consensus 249 ----------------------------------------L~~lLk~~~~~~~I---If~~sr~~~e~La~-~L~~~gi~ 284 (724)
|..++.. ...+++ ||+.......++.+ .++-.|+.
T Consensus 543 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~-~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~ 621 (776)
T KOG0390|consen 543 LLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEV-IREKLLVKSVLISNYTQTLDLFEQLCRWRGYE 621 (776)
T ss_pred hcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHH-HhhhcceEEEEeccHHHHHHHHHHHHhhcCce
Confidence 1111100 001222 33333344444444 44446999
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCC---ceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEE
Q 004900 285 CAAYHAGLNDKARSSVLDDWISSR---KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (724)
Q Consensus 285 v~~~H~~l~~~eR~~vl~~F~~g~---~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~ 361 (724)
+..+||.|+..+|..+++.|.+.. .-.|.+|.|.|.||++-+...||.||+++++..-.|.++||-|+||.-.|++|
T Consensus 622 ~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 622 VLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred EEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEE
Confidence 999999999999999999999643 34677799999999999999999999999999999999999999999999888
Q ss_pred E
Q 004900 362 Y 362 (724)
Q Consensus 362 ~ 362 (724)
-
T Consensus 702 r 702 (776)
T KOG0390|consen 702 R 702 (776)
T ss_pred E
Confidence 3
No 129
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.66 E-value=4.2e-14 Score=165.36 Aligned_cols=282 Identities=16% Similarity=0.114 Sum_probs=181.3
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++.+|+. +++.|.-+.-.+ .+.-|+.|.||.|||+++.+|+.. .+..|-||++...|+..-.+.+..
T Consensus 65 vrEa~~R~lG~r-~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 65 TREASFRTLGLR-HFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred HHHHHHHHhCCC-CCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHH
Confidence 456677778886 667877655444 445799999999999999999864 577899999999999876666544
Q ss_pred --cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH---hhhhcCCccEEEEccccccccC--
Q 004900 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK---KIHSRGLLNLVAIDEAHCISSW-- 173 (724)
Q Consensus 101 --~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~---~~~~~~~l~lIVIDEAH~l~~~-- 173 (724)
+|+.+.++.++.....+...+. .+|.|+|.--++-......+. ...-.+.+.+.||||+|.++=.
T Consensus 142 ~~LGLsvg~i~~~~~~~err~aY~--------~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeA 213 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKNYL--------KDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEA 213 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHhcC--------CCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccC
Confidence 7999998888887777766653 678999876554332222221 1112355889999999988510
Q ss_pred -----------------------------CCCCh------------HHHHHHHHH---------------------HhhC
Q 004900 174 -----------------------------GHDFR------------PSYRKLSSL---------------------RNYL 191 (724)
Q Consensus 174 -----------------------------G~dFr------------p~y~~L~~l---------------------~~~~ 191 (724)
+.||. ..+..+..+ +..+
T Consensus 214 rTPLiISg~~~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~ 293 (870)
T CHL00122 214 RTPLIISGQSKTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKE 293 (870)
T ss_pred CCceeccCCCccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHH
Confidence 00110 001111111 1000
Q ss_pred --------------------------C----------------C----------------------CCEEEEeecCChhh
Q 004900 192 --------------------------P----------------D----------------------VPILALTATAAPKV 207 (724)
Q Consensus 192 --------------------------p----------------~----------------------~pil~LSAT~~~~v 207 (724)
+ + ..+.+||+|+...
T Consensus 294 lf~~d~dYiV~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te- 372 (870)
T CHL00122 294 LFFKNVHYIVRNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTE- 372 (870)
T ss_pred HHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHH-
Confidence 0 0 1166788887643
Q ss_pred HHHHHHhhccCCCeEeeccCCCCceEEEEE--eccchhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCC
Q 004900 208 QKDVMESLCLQNPLVLKSSFNRPNLFYEVR--YKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGI 283 (724)
Q Consensus 208 ~~di~~~l~l~~~~vi~~s~~r~ni~~~v~--~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi 283 (724)
..++.+.. +-.++..+.++|.+..... .......++..+.+-+.. ..+.|+||-|.|++..+.|+..|...|+
T Consensus 373 ~~Ef~~iY---~l~vv~IPtnkp~~R~d~~d~v~~t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi 449 (870)
T CHL00122 373 ELEFEKIY---NLEVVCIPTHRPMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRL 449 (870)
T ss_pred HHHHHHHh---CCCEEECCCCCCccceeCCCeEEeCHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCC
Confidence 33444443 3345566777777654331 111223455555443322 3567999999999999999999999999
Q ss_pred ceeeecCCCC--HHHHHHHHHHhhcCC-ceEEEEccccccccCCC
Q 004900 284 SCAAYHAGLN--DKARSSVLDDWISSR-KQVVVATVAFGMGIDRK 325 (724)
Q Consensus 284 ~v~~~H~~l~--~~eR~~vl~~F~~g~-~~VLVAT~a~g~GIDip 325 (724)
+...+++.-. ..+-. ++.+ .|. ..|.|||+.+|||.|+.
T Consensus 450 ~h~vLNAk~~~~~~EA~-IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 450 PHQLLNAKPENVRRESE-IVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred ccceeeCCCccchhHHH-HHHh--cCCCCcEEEeccccCCCcCee
Confidence 9999998632 33322 3322 333 45999999999998864
No 130
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.65 E-value=2.4e-15 Score=167.12 Aligned_cols=300 Identities=15% Similarity=0.187 Sum_probs=189.2
Q ss_pred CHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEcCcHHHHHHHHHHHHH-cCCceeeecccc
Q 004900 40 RDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQ 112 (724)
Q Consensus 40 r~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l~s~~ 112 (724)
...+.+.+..+.+++-+++++.||+|||. |+|-.+ ..|.+-+.-|.+.-+...+.++.. +|+....- .
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTT--Ql~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~---V 432 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTT--QLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDT---V 432 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchh--hhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccc---c
Confidence 35667777778788888999999999998 455432 356556666998887777766554 43332110 0
Q ss_pred hHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCC
Q 004900 113 TMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (724)
Q Consensus 113 ~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p 192 (724)
.... -+++... +...|-|.|..++....... ..+.+.++||+||||.-+- +.| -.+.-|..+.....
T Consensus 433 GYsI---RFEdvT~--~~T~IkymTDGiLLrEsL~d-----~~L~kYSviImDEAHERsl-NtD--ilfGllk~~larRr 499 (1042)
T KOG0924|consen 433 GYSI---RFEDVTS--EDTKIKYMTDGILLRESLKD-----RDLDKYSVIIMDEAHERSL-NTD--ILFGLLKKVLARRR 499 (1042)
T ss_pred ceEE---EeeecCC--CceeEEEeccchHHHHHhhh-----hhhhheeEEEechhhhccc-chH--HHHHHHHHHHHhhc
Confidence 0000 0111111 34667777776654433222 2334478999999997542 111 11223344444555
Q ss_pred CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCC-ceEEEEEeccchhhHH-HHHHHHHH---hcCCceEEEEecc
Q 004900 193 DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVRYKDLLDDAY-ADLCSVLK---ANGDTCAIVYCLE 267 (724)
Q Consensus 193 ~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~-ni~~~v~~~~~~~~k~-~~L~~lLk---~~~~~~~IIf~~s 267 (724)
+..+|..|||+... .+..++| ..|.+...+-.-| ++.|.-.+. ++-+ ..+.+.+. ..+.+-++||...
T Consensus 500 dlKliVtSATm~a~---kf~nfFg-n~p~f~IpGRTyPV~~~~~k~p~---eDYVeaavkq~v~Ihl~~~~GdilIfmtG 572 (1042)
T KOG0924|consen 500 DLKLIVTSATMDAQ---KFSNFFG-NCPQFTIPGRTYPVEIMYTKTPV---EDYVEAAVKQAVQIHLSGPPGDILIFMTG 572 (1042)
T ss_pred cceEEEeeccccHH---HHHHHhC-CCceeeecCCccceEEEeccCch---HHHHHHHHhhheEeeccCCCCCEEEecCC
Confidence 88999999998754 3445555 2333222221111 122211111 1111 12222221 2344568999988
Q ss_pred cccHHHHHHHHH----hC------CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCC--
Q 004900 268 RTTCDELSAYLS----AG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-- 335 (724)
Q Consensus 268 r~~~e~La~~L~----~~------gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~-- 335 (724)
.+..+-....+. +. ++.+..+++.|+...+..+.+.--.|--++||||++++..+-+|+|++||..+.
T Consensus 573 qediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K 652 (1042)
T KOG0924|consen 573 QEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCK 652 (1042)
T ss_pred CcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCcee
Confidence 876655554443 31 577899999999999988888777888899999999999999999999997664
Q ss_pred ----------------CCCHHHHHHHHcccCCCCCCCeEEEEEccc
Q 004900 336 ----------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (724)
Q Consensus 336 ----------------P~S~~~yiQr~GRAGRdG~~g~~il~~~~~ 365 (724)
|-|-.+--||.|||||.| +|.|+-+|+.+
T Consensus 653 ~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 653 LKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred eeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhhh
Confidence 346677899999999997 99999999864
No 131
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.63 E-value=1.7e-14 Score=163.42 Aligned_cols=321 Identities=20% Similarity=0.205 Sum_probs=225.9
Q ss_pred CCCCCCHHHHHHHHHHH----cCCcEEEEcCCCchHHHHH--HHHHHc---CCCeEEEEcCcHHHHHHHHHHHHHcCCce
Q 004900 35 GHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCY--QIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (724)
Q Consensus 35 G~~~lr~~Q~eaI~ail----~g~dvlv~apTGsGKTl~~--~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~~gi~~ 105 (724)
|+. +.+||.-.++.+. .+-+.|+.-..|-|||.-. .+..|. ..|.-|||+|.-.| ..|.+++.++--..
T Consensus 397 ~i~-LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTl-eNWlrEf~kwCPsl 474 (941)
T KOG0389|consen 397 GIQ-LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTL-ENWLREFAKWCPSL 474 (941)
T ss_pred CCc-ccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhH-HHHHHHHHHhCCce
Confidence 443 8899999998865 4457788899999999621 122222 36788999999666 88999999986655
Q ss_pred eeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHH
Q 004900 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (724)
Q Consensus 106 ~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~ 185 (724)
.+...-.+..++..+...+..+...++|+++|..++.+..--..+. ...+++++|+||+|.+...+. .-|..|-
T Consensus 475 ~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsfl---k~~~~n~viyDEgHmLKN~~S---eRy~~LM 548 (941)
T KOG0389|consen 475 KVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFL---KNQKFNYVIYDEGHMLKNRTS---ERYKHLM 548 (941)
T ss_pred EEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHH---HhccccEEEecchhhhhccch---HHHHHhc
Confidence 5555555567888888888888889999999999887644222222 233589999999999987653 2344443
Q ss_pred HHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccC--------------------------------------
Q 004900 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF-------------------------------------- 227 (724)
Q Consensus 186 ~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~-------------------------------------- 227 (724)
.+ +....++||+|+-.+-+.+++..|.+--|.++..+.
T Consensus 549 ~I----~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFI 624 (941)
T KOG0389|consen 549 SI----NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFI 624 (941)
T ss_pred cc----cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHH
Confidence 32 245589999998776555555554433222221000
Q ss_pred ------------------------------------------------C--CCc--eEEEEE------------ecc---
Q 004900 228 ------------------------------------------------N--RPN--LFYEVR------------YKD--- 240 (724)
Q Consensus 228 ------------------------------------------------~--r~n--i~~~v~------------~~~--- 240 (724)
+ +++ +....+ +.+
T Consensus 625 LRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L 704 (941)
T KOG0389|consen 625 LRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKL 704 (941)
T ss_pred HHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHH
Confidence 0 000 000000 000
Q ss_pred -----------------------------------------------------chhhHHHHHHHHHHh--cCCceEEEEe
Q 004900 241 -----------------------------------------------------LLDDAYADLCSVLKA--NGDTCAIVYC 265 (724)
Q Consensus 241 -----------------------------------------------------~~~~k~~~L~~lLk~--~~~~~~IIf~ 265 (724)
....++..|..+|.. ..+.+++||-
T Consensus 705 ~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~~G~RVLiFS 784 (941)
T KOG0389|consen 705 RKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKKKGDRVLIFS 784 (941)
T ss_pred HHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhhcCCEEEEee
Confidence 000122333334432 2357899999
Q ss_pred cccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCC--ceEEEEccccccccCCCCcceEEeeCCCCCHHHHH
Q 004900 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFY 343 (724)
Q Consensus 266 ~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~--~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yi 343 (724)
.-....+-|...|...++...-+.|...-.+|..++..|...+ ...|++|.|.|.|||+...+.||.+|+.-++-.-.
T Consensus 785 QFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~ 864 (941)
T KOG0389|consen 785 QFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDK 864 (941)
T ss_pred HHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccc
Confidence 9999999999999999999999999999999999999999655 35788999999999999999999999999999999
Q ss_pred HHHcccCCCCCCCeEEE--EEccccH
Q 004900 344 QESGRAGRDQLPSKSLL--YYGMDDR 367 (724)
Q Consensus 344 Qr~GRAGRdG~~g~~il--~~~~~D~ 367 (724)
|.-.||.|.|+...+.+ +++.+-.
T Consensus 865 QAEDRcHRvGQtkpVtV~rLItk~TI 890 (941)
T KOG0389|consen 865 QAEDRCHRVGQTKPVTVYRLITKSTI 890 (941)
T ss_pred hhHHHHHhhCCcceeEEEEEEecCcH
Confidence 99999999998765544 4554433
No 132
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.62 E-value=8.9e-16 Score=165.81 Aligned_cols=286 Identities=18% Similarity=0.194 Sum_probs=190.3
Q ss_pred CCCCHHHHHHHHHHHcC---CcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcC-Cc---eeeec
Q 004900 37 AQFRDKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG-IA---GEFLS 109 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g---~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~g-i~---~~~l~ 109 (724)
..+||+|+..+..+..+ ++.+++.|+|+|||++-.-.+.--.+.+||++..-.-+.||..++..+. +. .+.+.
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rFT 380 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRFT 380 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEee
Confidence 47899999999998843 6889999999999997655555557789999998888889998887752 22 12222
Q ss_pred ccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHH----HHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHH
Q 004900 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFM----SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (724)
Q Consensus 110 s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l----~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~ 185 (724)
+... + .......|++.|..|++..+.. ..+........++++++||+|.+...- ||.....+
T Consensus 381 sd~K---------e--~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~M--FRRVlsiv- 446 (776)
T KOG1123|consen 381 SDAK---------E--RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKM--FRRVLSIV- 446 (776)
T ss_pred cccc---------c--cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHH--HHHHHHHH-
Confidence 1110 0 0122467999999998764422 233455556679999999999987633 44333222
Q ss_pred HHHhhCCCCCEEEEeecCChhhHHHHHHhhc-cCCCeEeecc-------------------------C---------CCC
Q 004900 186 SLRNYLPDVPILALTATAAPKVQKDVMESLC-LQNPLVLKSS-------------------------F---------NRP 230 (724)
Q Consensus 186 ~l~~~~p~~pil~LSAT~~~~v~~di~~~l~-l~~~~vi~~s-------------------------~---------~r~ 230 (724)
.. -.-++||||+..+..+ +..|+ +..|..+... | .+.
T Consensus 447 --~a----HcKLGLTATLvREDdK--I~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr 518 (776)
T KOG1123|consen 447 --QA----HCKLGLTATLVREDDK--ITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKR 518 (776)
T ss_pred --HH----HhhccceeEEeecccc--ccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhh
Confidence 21 2258999998765322 11111 1122222111 0 011
Q ss_pred ceEEEEEeccchhhHHHHHHHHHH--hcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhh-cC
Q 004900 231 NLFYEVRYKDLLDDAYADLCSVLK--ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI-SS 307 (724)
Q Consensus 231 ni~~~v~~~~~~~~k~~~L~~lLk--~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~-~g 307 (724)
-+.|... ..++..-.-+++ +..+.++|||..+.-...+.|-.|.+ -+++|..++.+|.+|++.|+ +.
T Consensus 519 ~lLyvMN-----P~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~ 588 (776)
T KOG1123|consen 519 MLLYVMN-----PNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNP 588 (776)
T ss_pred heeeecC-----cchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCC
Confidence 1111111 123333222222 23567899999988888877777644 46789999999999999999 67
Q ss_pred CceEEEEccccccccCCCCcceEEeeCCC-CCHHHHHHHHcccCCCCC
Q 004900 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIP-KSMEAFYQESGRAGRDQL 354 (724)
Q Consensus 308 ~~~VLVAT~a~g~GIDip~V~~VI~~d~P-~S~~~yiQr~GRAGRdG~ 354 (724)
.++-|+-..+....||+|..+++|+...- .|-.+=.||.||.-|+.+
T Consensus 589 ~vNTIFlSKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 589 KVNTIFLSKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK 636 (776)
T ss_pred ccceEEEeeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhh
Confidence 78889999999999999999999976643 478888999999888643
No 133
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.59 E-value=4.2e-13 Score=163.77 Aligned_cols=170 Identities=15% Similarity=0.183 Sum_probs=108.3
Q ss_pred CEEEEeecCChhh-HHHHHHhhccCCC----eEeeccCCCC-ceEEEEEe-cc----c-hhhHHHHH----HHHHHhcCC
Q 004900 195 PILALTATAAPKV-QKDVMESLCLQNP----LVLKSSFNRP-NLFYEVRY-KD----L-LDDAYADL----CSVLKANGD 258 (724)
Q Consensus 195 pil~LSAT~~~~v-~~di~~~l~l~~~----~vi~~s~~r~-ni~~~v~~-~~----~-~~~k~~~L----~~lLk~~~~ 258 (724)
++|++|||++..- ...+...+|+.+. ..+..+|+.. +....+.. .. . .+.-...+ .+++.. .+
T Consensus 674 ~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~~~~~la~~i~~l~~~-~~ 752 (928)
T PRK08074 674 SVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEEYIEEVAAYIAKIAKA-TK 752 (928)
T ss_pred cEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHHHHHHHHHHHHHHHHh-CC
Confidence 3788899987532 3445677888642 2233444432 22111111 11 0 12222333 333333 34
Q ss_pred ceEEEEecccccHHHHHHHHHhCCC--ceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCC--cceEEeeC
Q 004900 259 TCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKD--VRLVCHFN 334 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~gi--~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~--V~~VI~~d 334 (724)
++++|+++|.+..+.++..|..... ....+.=|++...|..++++|++++-.||++|..|.+|||+|+ +++||...
T Consensus 753 g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~k 832 (928)
T PRK08074 753 GRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVR 832 (928)
T ss_pred CCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCccccCCCceEEEEEec
Confidence 5799999999999999999976422 1222222444456788999999998899999999999999996 58898888
Q ss_pred CCC------------------------------CHHHHHHHHcccCCCCCCCeEEEEEccc
Q 004900 335 IPK------------------------------SMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (724)
Q Consensus 335 ~P~------------------------------S~~~yiQr~GRAGRdG~~g~~il~~~~~ 365 (724)
+|- -+..+.|.+||.-|....--++++++..
T Consensus 833 LPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~ilD~R 893 (928)
T PRK08074 833 LPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFVLDRR 893 (928)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEEecCc
Confidence 763 1234578899999987655456666543
No 134
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.59 E-value=5.8e-14 Score=165.34 Aligned_cols=307 Identities=17% Similarity=0.202 Sum_probs=195.1
Q ss_pred CCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------C--CCeEEEEcCcHHHHHHHHHHHHH-cCCceeeec
Q 004900 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------K--PGIVLVVSPLIALMENQVIGLKE-KGIAGEFLS 109 (724)
Q Consensus 39 lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~--~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l~ 109 (724)
....+.+.++++.+++-+++.+.||+|||. |+|... . ...+|+--|.|--+-..++++.. .+-...
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTT--QvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g--- 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTT--QVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG--- 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchh--hhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC---
Confidence 346788888999888999999999999997 444321 1 23455555887655555555443 221111
Q ss_pred ccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHh
Q 004900 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (724)
Q Consensus 110 s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~ 189 (724)
.......+ + . ........++|+|.-+ ++..+........+..||+||+|.-+. ..||--.+ +..+..
T Consensus 249 ~~VGYqvr--l--~-~~~s~~t~L~fcTtGv-----LLr~L~~~~~l~~vthiivDEVHER~i-~~DflLi~--lk~lL~ 315 (924)
T KOG0920|consen 249 EEVGYQVR--L--E-SKRSRETRLLFCTTGV-----LLRRLQSDPTLSGVTHIIVDEVHERSI-NTDFLLIL--LKDLLP 315 (924)
T ss_pred CeeeEEEe--e--e-cccCCceeEEEecHHH-----HHHHhccCcccccCceeeeeeEEEccC-CcccHHHH--HHHHhh
Confidence 00000000 0 0 0011125566555443 333444455566689999999997654 23443322 344566
Q ss_pred hCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCce-------------------EE-------------EEE
Q 004900 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNL-------------------FY-------------EVR 237 (724)
Q Consensus 190 ~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni-------------------~~-------------~v~ 237 (724)
..|+..+++||||...+. +..+++ ..|++...++.-|.. .+ .+.
T Consensus 316 ~~p~LkvILMSAT~dae~---fs~YF~-~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (924)
T KOG0920|consen 316 RNPDLKVILMSATLDAEL---FSDYFG-GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLW 391 (924)
T ss_pred hCCCceEEEeeeecchHH---HHHHhC-CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhc
Confidence 668999999999988443 333433 222222211111100 00 000
Q ss_pred eccchhhHHHHHHHHHHh-cCCceEEEEecccccHHHHHHHHHhC-------CCceeeecCCCCHHHHHHHHHHhhcCCc
Q 004900 238 YKDLLDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRK 309 (724)
Q Consensus 238 ~~~~~~~k~~~L~~lLk~-~~~~~~IIf~~sr~~~e~La~~L~~~-------gi~v~~~H~~l~~~eR~~vl~~F~~g~~ 309 (724)
..+..-+.+..+..++.. ...+.+|||.+...+...+.+.|... .+-+.++|+.|+..++..+...--.|.-
T Consensus 392 ~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~R 471 (924)
T KOG0920|consen 392 EPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTR 471 (924)
T ss_pred cccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcc
Confidence 001112233444444433 33678999999999999999999642 2456789999999999999988889999
Q ss_pred eEEEEccccccccCCCCcceEEeeCCC--------C----------CHHHHHHHHcccCCCCCCCeEEEEEccccHH
Q 004900 310 QVVVATVAFGMGIDRKDVRLVCHFNIP--------K----------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (724)
Q Consensus 310 ~VLVAT~a~g~GIDip~V~~VI~~d~P--------~----------S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~ 368 (724)
+||+||++++.+|-++||-+||..+.- . |...-.||.|||||. .+|.|+-+|+.....
T Consensus 472 KIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 472 KIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYE 547 (924)
T ss_pred hhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhh
Confidence 999999999999999999999965532 2 456678999999999 699999999876543
No 135
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=3.3e-14 Score=160.57 Aligned_cols=299 Identities=18% Similarity=0.234 Sum_probs=180.2
Q ss_pred HHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc-----------CCCeEEEEcCcHHHHHHHHHHHH-HcCC---ceeee
Q 004900 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIVLVVSPLIALMENQVIGLK-EKGI---AGEFL 108 (724)
Q Consensus 44 ~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~-----------~~~~vLVlsPl~aL~~qqv~~l~-~~gi---~~~~l 108 (724)
.+++++|-.+--+||++.||+|||. |+|-++ .++.+=|.-|.|.-+.-...+.. .+|. .+.+.
T Consensus 262 q~IMEaIn~n~vvIIcGeTGsGKTT--QvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 262 QRIMEAINENPVVIICGETGSGKTT--QVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHHhhcCCeEEEecCCCCCccc--cchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 4566777666678899999999998 566542 14556666698866555444332 2222 22111
Q ss_pred cccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCC-hHHHHHHHHH
Q 004900 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF-RPSYRKLSSL 187 (724)
Q Consensus 109 ~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dF-rp~y~~L~~l 187 (724)
. + .-....++..|.+.|..++.. .+....-+...+.|||||||.-+=.- |. -.-+.++-.+
T Consensus 340 I-------R-----fd~ti~e~T~IkFMTDGVLLr-----Ei~~DflL~kYSvIIlDEAHERSvnT-DILiGmLSRiV~L 401 (1172)
T KOG0926|consen 340 I-------R-----FDGTIGEDTSIKFMTDGVLLR-----EIENDFLLTKYSVIILDEAHERSVNT-DILIGMLSRIVPL 401 (1172)
T ss_pred E-------E-----eccccCCCceeEEecchHHHH-----HHHHhHhhhhceeEEechhhhccchH-HHHHHHHHHHHHH
Confidence 0 0 001122345666666655432 33333334557899999999644211 10 0111223333
Q ss_pred HhhCC-------CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCC--CceEEEEEec-cchhhHHHHHHHHHHhcC
Q 004900 188 RNYLP-------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR--PNLFYEVRYK-DLLDDAYADLCSVLKANG 257 (724)
Q Consensus 188 ~~~~p-------~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r--~ni~~~v~~~-~~~~~k~~~L~~lLk~~~ 257 (724)
+..+. ...+|.||||+.-.....-...+-+..| ++...... -.|++.-+.. +...+.+...+.+-+..+
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP-likVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP 480 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP-LIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLP 480 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCc-eeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCC
Confidence 43322 3458999999864432222233333444 33332211 1222222221 223455555666666677
Q ss_pred CceEEEEecccccHHHHHHHHHhC-----C-C------------------------------------------------
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG-----G-I------------------------------------------------ 283 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~-----g-i------------------------------------------------ 283 (724)
.+.+|||+....++++|...|++. + .
T Consensus 481 ~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~ 560 (1172)
T KOG0926|consen 481 PGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSG 560 (1172)
T ss_pred CCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhccc
Confidence 888999999999999999999753 1 0
Q ss_pred ---------------------------------------------ceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc
Q 004900 284 ---------------------------------------------SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (724)
Q Consensus 284 ---------------------------------------------~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~ 318 (724)
-|.++++-++.+.+++|.+.--.|.--++|||+++
T Consensus 561 ~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVA 640 (1172)
T KOG0926|consen 561 FASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVA 640 (1172)
T ss_pred chhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccch
Confidence 01334445666777777766667888899999999
Q ss_pred ccccCCCCcceEEeeCCCC------------------CHHHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 319 GMGIDRKDVRLVCHFNIPK------------------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 319 g~GIDip~V~~VI~~d~P~------------------S~~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
+..+-+|+|++||..+--+ |-.+--||+|||||-| +|.|+-+|+.
T Consensus 641 ETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg-pGHcYRLYSS 703 (1172)
T KOG0926|consen 641 ETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG-PGHCYRLYSS 703 (1172)
T ss_pred hcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC-CCceeehhhh
Confidence 9999999999999766432 3345579999999998 9999999874
No 136
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.56 E-value=1.1e-12 Score=153.35 Aligned_cols=289 Identities=15% Similarity=0.043 Sum_probs=189.1
Q ss_pred EEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHHHHHHHHHHHHH-cC-CceeeecccchHHHHHHHHhhhhcCCCCcc
Q 004900 58 CLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKE-KG-IAGEFLSSTQTMQVKTKIYEDLDSGKPSLR 132 (724)
Q Consensus 58 v~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~aL~~qqv~~l~~-~g-i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~ 132 (724)
..+.+|+|||.+|+-.+ +..++.+||++|.++|..|.+..|+. +| ..+..+|+..+..++...|..+..|. .+
T Consensus 165 ~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~--~~ 242 (665)
T PRK14873 165 WQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ--AR 242 (665)
T ss_pred hhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC--Cc
Confidence 33446999999997543 55788999999999999999999987 55 67889999999999999999988875 88
Q ss_pred EEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCC-CChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHH
Q 004900 133 LLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (724)
Q Consensus 133 il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~-dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di 211 (724)
|+++|---+..|- .++++|||||-|.-+--.. ..+..-+.+..++....++|+|+-|||++-+.....
T Consensus 243 IViGtRSAvFaP~-----------~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~ 311 (665)
T PRK14873 243 VVVGTRSAVFAPV-----------EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALV 311 (665)
T ss_pred EEEEcceeEEecc-----------CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHH
Confidence 9999988777663 4589999999997643211 123333668888888889999999999998776533
Q ss_pred HHhh-c-cC-CCeEeeccCCCCceEEEEEec------------cchhhHHHHHHHHHHhcCCceEEEEecccccH-----
Q 004900 212 MESL-C-LQ-NPLVLKSSFNRPNLFYEVRYK------------DLLDDAYADLCSVLKANGDTCAIVYCLERTTC----- 271 (724)
Q Consensus 212 ~~~l-~-l~-~~~vi~~s~~r~ni~~~v~~~------------~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~----- 271 (724)
..-. . +. ..... ....|.+...-... ......++.+.+.|+. + ++|||.|.+-.+
T Consensus 312 ~~g~~~~~~~~~~~~--~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~--g-qvll~lnRrGyap~l~C 386 (665)
T PRK14873 312 ESGWAHDLVAPRPVV--RARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEH--G-PVLVQVPRRGYVPSLAC 386 (665)
T ss_pred hcCcceeeccccccc--cCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhc--C-cEEEEecCCCCCCeeEh
Confidence 2211 0 00 00000 11223332221100 0112344555555543 3 789888776433
Q ss_pred ------------------------------------------------------HHHHHHHHhC--CCceeeecCCCCHH
Q 004900 272 ------------------------------------------------------DELSAYLSAG--GISCAAYHAGLNDK 295 (724)
Q Consensus 272 ------------------------------------------------------e~La~~L~~~--gi~v~~~H~~l~~~ 295 (724)
+.+++.|.+. +.++..+
T Consensus 387 ~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~r~------- 459 (665)
T PRK14873 387 ARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVVTS------- 459 (665)
T ss_pred hhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEEEE-------
Confidence 3333333322 1222211
Q ss_pred HHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCC------------CHHHHHHHHcccCCCCCCCeEEEEEc
Q 004900 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK------------SMEAFYQESGRAGRDQLPSKSLLYYG 363 (724)
Q Consensus 296 eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~------------S~~~yiQr~GRAGRdG~~g~~il~~~ 363 (724)
++..+++.|. ++.+|||+|..+..=+. +++..|+..|... ...-+.|-+||+||.+.+|..++.+.
T Consensus 460 d~d~~l~~~~-~~~~IlVGTqgaepm~~-g~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagragr~~~~G~V~iq~~ 537 (665)
T PRK14873 460 GGDQVVDTVD-AGPALVVATPGAEPRVE-GGYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVRPRADGGQVVVVAE 537 (665)
T ss_pred ChHHHHHhhc-cCCCEEEECCCCccccc-CCceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhcCCCCCCEEEEEeC
Confidence 1234778886 59999999984332222 4778887666431 45667899999999999999998876
Q ss_pred cccHHHHHHHH
Q 004900 364 MDDRRRMEFIL 374 (724)
Q Consensus 364 ~~D~~~~~~i~ 374 (724)
+++ ..++.+.
T Consensus 538 p~~-~~~~~l~ 547 (665)
T PRK14873 538 SSL-PTVQALI 547 (665)
T ss_pred CCC-HHHHHHH
Confidence 554 3344444
No 137
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.55 E-value=8.1e-14 Score=137.00 Aligned_cols=167 Identities=31% Similarity=0.385 Sum_probs=114.5
Q ss_pred cCCCCCCHHHHHHHHHHHcC-CcEEEEcCCCchHHHHHHHHHHc---C--CCeEEEEcCcHHHHHHHHHHHHHcCC----
Q 004900 34 FGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGLKEKGI---- 103 (724)
Q Consensus 34 fG~~~lr~~Q~eaI~ail~g-~dvlv~apTGsGKTl~~~lpal~---~--~~~vLVlsPl~aL~~qqv~~l~~~gi---- 103 (724)
+++..++++|.+++..+..+ +.+++.+|||+|||.++..+++. . ...+||++|+.+++.|+...+...+.
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 57788999999999999998 99999999999999988777654 2 36799999999999999999888652
Q ss_pred -ceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHH
Q 004900 104 -AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (724)
Q Consensus 104 -~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~ 182 (724)
....+.+.... ..+.....+ ...++++|++.+........ .....++++||||||.+..+. +...+.
T Consensus 84 ~~~~~~~~~~~~----~~~~~~~~~--~~~v~~~t~~~l~~~~~~~~----~~~~~~~~iIiDE~h~~~~~~--~~~~~~ 151 (201)
T smart00487 84 KVVGLYGGDSKR----EQLRKLESG--KTDILVTTPGRLLDLLENDL----LELSNVDLVILDEAHRLLDGG--FGDQLE 151 (201)
T ss_pred EEEEEeCCcchH----HHHHHHhcC--CCCEEEeChHHHHHHHHcCC----cCHhHCCEEEEECHHHHhcCC--cHHHHH
Confidence 22223222211 122222222 24788888875543221110 233447899999999998642 333333
Q ss_pred HHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhh
Q 004900 183 KLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (724)
Q Consensus 183 ~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l 215 (724)
. +.... ++.+++++|||+++.........+
T Consensus 152 ~---~~~~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 152 K---LLKLLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred H---HHHhCCccceEEEEecCCchhHHHHHHHhc
Confidence 3 33333 578899999999977766554443
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=5.4e-12 Score=147.60 Aligned_cols=135 Identities=18% Similarity=0.153 Sum_probs=98.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++.+|.. +++.|.-.--.+.. --|+.|.||-||||++.+|+.. .+..|-||++..-|+..-.+.+..
T Consensus 74 vREa~~R~lG~r-~ydVQliGgl~Lh~--G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 74 VREASKRVLGMR-HFDVQLIGGMVLHE--GQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred HHHHHHHHhCCC-cchhHHHhhhhhcC--CceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHH
Confidence 345666677875 55677665544444 4599999999999999999985 577899999999999865555443
Q ss_pred --cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh---hhhcCCccEEEEccccccc
Q 004900 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 101 --~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~---~~~~~~l~lIVIDEAH~l~ 171 (724)
+|+.+.++.+.+....+...+ ..+|.|+|+--+.-......+.. ..-...+.+.||||+|.++
T Consensus 151 ~~LGLtvg~i~~~~~~~err~aY--------~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKNY--------ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHhc--------CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 799999888887777766555 37899999886654433333321 1123558899999999885
No 139
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.53 E-value=3e-12 Score=148.27 Aligned_cols=168 Identities=14% Similarity=0.036 Sum_probs=110.7
Q ss_pred CEEEEeecCChhh------HHHHHHhhccCCCe-EeeccCC----CCc--eEEEEEe------ccc---h----------
Q 004900 195 PILALTATAAPKV------QKDVMESLCLQNPL-VLKSSFN----RPN--LFYEVRY------KDL---L---------- 242 (724)
Q Consensus 195 pil~LSAT~~~~v------~~di~~~l~l~~~~-vi~~s~~----r~n--i~~~v~~------~~~---~---------- 242 (724)
++|+.|||++-.- ...+.+.+|+.... .+..+|+ +.. +.|.-.. ... .
T Consensus 373 ~~I~TSATL~v~~~~~~~~F~~f~~~lGL~~~~l~~~SPFd~~y~~qa~~~LyvP~~~~~~lP~p~~~~~~~~~~~~~~~ 452 (636)
T TIGR03117 373 GAIIVSATLYLPDRFGQMSCDYLKRVLSLPLSRLDTPSPIVAPWVRNAIPHLHVPNAKARFLRPVGKDEQGDANLQEAER 452 (636)
T ss_pred eEEEEccccccCCcCCCcCcHHHHHhcCCCccceeCCCCCCchhHhcCceEEEEcCccccCCCCCCCCcccchhhhcchh
Confidence 4899999988644 57788889986442 3345666 444 3333211 111 0
Q ss_pred ---hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhc----CCceEEEEc
Q 004900 243 ---DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS----SRKQVVVAT 315 (724)
Q Consensus 243 ---~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~----g~~~VLVAT 315 (724)
+.....+..++.... +.++|.+.|....+.++..|...---...+.|..+ .+..++++|+. |.-.||++|
T Consensus 453 ~~~~~~~~~~~~~~~~~~-G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 453 TWLENVSLSTAAILRKAQ-GGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred hHHHHHHHHHHHHHHHcC-CCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 113344555665544 47999999999999999999764212344555432 34567888886 478899999
Q ss_pred cccccccCC--------C--CcceEEeeCCCC-------------------------CHHHHHHHHcccCCCCCC--CeE
Q 004900 316 VAFGMGIDR--------K--DVRLVCHFNIPK-------------------------SMEAFYQESGRAGRDQLP--SKS 358 (724)
Q Consensus 316 ~a~g~GIDi--------p--~V~~VI~~d~P~-------------------------S~~~yiQr~GRAGRdG~~--g~~ 358 (724)
..|..|||+ | .++.||...+|- ..-.+.|-+||.-|.... --.
T Consensus 530 ~sfweGvDv~~~~~~p~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~ 609 (636)
T TIGR03117 530 GGAWTGIDLTHKPVSPDKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRR 609 (636)
T ss_pred CccccccccCCccCCCCCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceE
Confidence 999999999 3 388999888872 123567888888887665 344
Q ss_pred EEEEccc
Q 004900 359 LLYYGMD 365 (724)
Q Consensus 359 il~~~~~ 365 (724)
|+++++.
T Consensus 610 i~ilD~R 616 (636)
T TIGR03117 610 IHMLDGR 616 (636)
T ss_pred EEEEeCC
Confidence 5555544
No 140
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.52 E-value=4.2e-14 Score=120.10 Aligned_cols=81 Identities=35% Similarity=0.534 Sum_probs=77.8
Q ss_pred HHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCC
Q 004900 273 ELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (724)
Q Consensus 273 ~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRd 352 (724)
.++..|...++.+..+||++++++|..+++.|.++...|||+|+++++|+|+|+++.||.+++|.+...|.|++||++|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R~ 81 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGRA 81 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccccC
Confidence 57788888899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 004900 353 Q 353 (724)
Q Consensus 353 G 353 (724)
|
T Consensus 82 g 82 (82)
T smart00490 82 G 82 (82)
T ss_pred C
Confidence 6
No 141
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.51 E-value=2.3e-13 Score=147.43 Aligned_cols=308 Identities=16% Similarity=0.132 Sum_probs=193.0
Q ss_pred CCCCCHHHHHHHHHHH-cCCcEEEEcCCCchHHHHHHHHH-H-cCCCeEEEEcCcHHHHHHHHHHHHHcCCceee--ecc
Q 004900 36 HAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPA-L-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEF--LSS 110 (724)
Q Consensus 36 ~~~lr~~Q~eaI~ail-~g~dvlv~apTGsGKTl~~~lpa-l-~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~--l~s 110 (724)
++.+-|+|++.+...+ +|..+++....|-|||+-++..+ . ......|||||. +|-..|.+.++++.-.... +..
T Consensus 196 vs~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraEwplliVcPA-svrftWa~al~r~lps~~pi~vv~ 274 (689)
T KOG1000|consen 196 VSRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPA-SVRFTWAKALNRFLPSIHPIFVVD 274 (689)
T ss_pred HHhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhcCcEEEEecH-HHhHHHHHHHHHhcccccceEEEe
Confidence 4568899999887766 56789999999999999665433 2 357889999998 5557899999986322111 110
Q ss_pred cchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhh
Q 004900 111 TQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY 190 (724)
Q Consensus 111 ~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~ 190 (724)
... +.+......-.|.+++.|++ ..+........+.+||+||+|.+.+-.- -| .+.+-.+.+.
T Consensus 275 ~~~--------D~~~~~~t~~~v~ivSye~l------s~l~~~l~~~~~~vvI~DEsH~Lk~skt-kr--~Ka~~dllk~ 337 (689)
T KOG1000|consen 275 KSS--------DPLPDVCTSNTVAIVSYEQL------SLLHDILKKEKYRVVIFDESHMLKDSKT-KR--TKAATDLLKV 337 (689)
T ss_pred ccc--------CCccccccCCeEEEEEHHHH------HHHHHHHhcccceEEEEechhhhhccch-hh--hhhhhhHHHH
Confidence 000 00000111133445555543 3444455556689999999999865221 01 1111111111
Q ss_pred CCCCCEEEEeecCChhhHHHHHHh--------------hccCCCe------Ee--e------------------------
Q 004900 191 LPDVPILALTATAAPKVQKDVMES--------------LCLQNPL------VL--K------------------------ 224 (724)
Q Consensus 191 ~p~~pil~LSAT~~~~v~~di~~~--------------l~l~~~~------vi--~------------------------ 224 (724)
-..+|+||+|+.-.--.++... ++...+. .+ .
T Consensus 338 --akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~d 415 (689)
T KOG1000|consen 338 --AKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKAD 415 (689)
T ss_pred --hhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2348999999642111100000 0000000 00 0
Q ss_pred ----ccCCCCceEEEEEecc------c---------------------------hhhHHHHHHHHHHh------cCCceE
Q 004900 225 ----SSFNRPNLFYEVRYKD------L---------------------------LDDAYADLCSVLKA------NGDTCA 261 (724)
Q Consensus 225 ----~s~~r~ni~~~v~~~~------~---------------------------~~~k~~~L~~lLk~------~~~~~~ 261 (724)
.+..|..+.|...... . ...++..+.++|-. .++.+.
T Consensus 416 vL~qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~Kf 495 (689)
T KOG1000|consen 416 VLKQLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKF 495 (689)
T ss_pred HHhhCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceE
Confidence 0011111111110000 0 00112223333333 356789
Q ss_pred EEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhc-CCceE-EEEccccccccCCCCcceEEeeCCCCCH
Q 004900 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS-SRKQV-VVATVAFGMGIDRKDVRLVCHFNIPKSM 339 (724)
Q Consensus 262 IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~-g~~~V-LVAT~a~g~GIDip~V~~VI~~d~P~S~ 339 (724)
+|||.-....+.+..++.++++...-+.|..++.+|....+.|+. .++.| |++-.|.|+|+++...+.|++..+++++
T Consensus 496 lVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnP 575 (689)
T KOG1000|consen 496 LVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNP 575 (689)
T ss_pred EEEehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCC
Confidence 999999999999999999999999999999999999999999995 44554 4556789999999999999999999999
Q ss_pred HHHHHHHcccCCCCCCCeEEEEEc
Q 004900 340 EAFYQESGRAGRDQLPSKSLLYYG 363 (724)
Q Consensus 340 ~~yiQr~GRAGRdG~~g~~il~~~ 363 (724)
--++|.-.|+.|-|+.+.+.++|-
T Consensus 576 gvLlQAEDRaHRiGQkssV~v~yl 599 (689)
T KOG1000|consen 576 GVLLQAEDRAHRIGQKSSVFVQYL 599 (689)
T ss_pred ceEEechhhhhhccccceeeEEEE
Confidence 999999999999999887655553
No 142
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.48 E-value=4.3e-12 Score=150.39 Aligned_cols=165 Identities=21% Similarity=0.209 Sum_probs=105.5
Q ss_pred EEEEeecCChhhH-HHHHHhhccCCCe--E-eeccCCCCceEEEEEec--------cchhhHHHHHHHHHHhcCCceEEE
Q 004900 196 ILALTATAAPKVQ-KDVMESLCLQNPL--V-LKSSFNRPNLFYEVRYK--------DLLDDAYADLCSVLKANGDTCAIV 263 (724)
Q Consensus 196 il~LSAT~~~~v~-~di~~~l~l~~~~--v-i~~s~~r~ni~~~v~~~--------~~~~~k~~~L~~lLk~~~~~~~II 263 (724)
+|++|||+.+... ..+...+++.... + +..+++........... ....+....+..++...++ .++|
T Consensus 406 ~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~lv 484 (654)
T COG1199 406 VVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKASPG-GVLV 484 (654)
T ss_pred EEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhcCC-CEEE
Confidence 8899999887532 3345555544433 1 12222322221111111 1112333445555555554 7999
Q ss_pred EecccccHHHHHHHHHhCCCc-eeeecCCCCHHHHHHHHHHhhcCCc-eEEEEccccccccCCCC--cceEEeeCCCC--
Q 004900 264 YCLERTTCDELSAYLSAGGIS-CAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKD--VRLVCHFNIPK-- 337 (724)
Q Consensus 264 f~~sr~~~e~La~~L~~~gi~-v~~~H~~l~~~eR~~vl~~F~~g~~-~VLVAT~a~g~GIDip~--V~~VI~~d~P~-- 337 (724)
|++|.+..+.+++.|...... ....+|..+ +..+++.|..+.- .++|+|..|.+|||+|+ .+.||..++|-
T Consensus 485 lF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~ 561 (654)
T COG1199 485 LFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPN 561 (654)
T ss_pred EeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCC
Confidence 999999999999999876542 344555444 3477888886554 89999999999999996 58899888873
Q ss_pred ----------------------------CHHHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 338 ----------------------------SMEAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 338 ----------------------------S~~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
-+....|.+||+-|.-...-.+++++.
T Consensus 562 p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD~ 616 (654)
T COG1199 562 PDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLDK 616 (654)
T ss_pred CCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEecc
Confidence 345779999999996544444444443
No 143
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.46 E-value=8.3e-14 Score=136.70 Aligned_cols=153 Identities=26% Similarity=0.260 Sum_probs=93.7
Q ss_pred CCCHHHHHHHHHHHc-------CCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecc
Q 004900 38 QFRDKQLDAIQAVLS-------GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~-------g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s 110 (724)
+||++|.+++..+.. .+.+++.+|||+|||.+++..+......+||++|+.+|+.|+...+..++........
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 489999999999884 5889999999999999877444332229999999999999999999665433221110
Q ss_pred c--------------chHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHH-------HHhhhhcCCccEEEEccccc
Q 004900 111 T--------------QTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK-------LKKIHSRGLLNLVAIDEAHC 169 (724)
Q Consensus 111 ~--------------~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~-------L~~~~~~~~l~lIVIDEAH~ 169 (724)
. ........ ........+++.+...+........ ..........++||+||||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~ 157 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKS-----ESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHH 157 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHH-----HHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGC
T ss_pred ccccccccccccccccccccccc-----ccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhh
Confidence 0 00000000 1112245677777665543321110 00112233478999999998
Q ss_pred cccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCC
Q 004900 170 ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (724)
Q Consensus 170 l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~ 204 (724)
+... ..|..+ .. ++...+++||||+.
T Consensus 158 ~~~~-----~~~~~i---~~-~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 158 YPSD-----SSYREI---IE-FKAAFILGLTATPF 183 (184)
T ss_dssp THHH-----HHHHHH---HH-SSCCEEEEEESS-S
T ss_pred cCCH-----HHHHHH---Hc-CCCCeEEEEEeCcc
Confidence 7641 113333 22 67788999999985
No 144
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.46 E-value=2.7e-11 Score=143.78 Aligned_cols=163 Identities=18% Similarity=0.148 Sum_probs=103.3
Q ss_pred EEEEeecCChh-hHHHHHHhhccCC---Ce--EeeccCCCCceEEEEEe----cc-chh----hHHHHHHHHHHhcCCce
Q 004900 196 ILALTATAAPK-VQKDVMESLCLQN---PL--VLKSSFNRPNLFYEVRY----KD-LLD----DAYADLCSVLKANGDTC 260 (724)
Q Consensus 196 il~LSAT~~~~-v~~di~~~l~l~~---~~--vi~~s~~r~ni~~~v~~----~~-~~~----~k~~~L~~lLk~~~~~~ 260 (724)
+|++|||+++. ....+.+.+|+.+ .. .+..+|+..+....+.. .. ..+ .....+..++. .+ +.
T Consensus 459 vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~~~q~~l~vp~~~~~p~~~~~~~~~~~~~i~~l~~-~~-gg 536 (697)
T PRK11747 459 AVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDYPNQGKLVIPKMRAEPDNEEAHTAEMAEFLPELLE-KH-KG 536 (697)
T ss_pred EEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCHHHccEEEeCCCCCCCCCcHHHHHHHHHHHHHHHh-cC-CC
Confidence 68889998763 3455667788863 22 23344443222111111 11 111 22333444445 33 34
Q ss_pred EEEEecccccHHHHHHHHHhC-CCceeeecCCCCHHHHHHHHHHhh----cCCceEEEEccccccccCCCC--cceEEee
Q 004900 261 AIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWI----SSRKQVVVATVAFGMGIDRKD--VRLVCHF 333 (724)
Q Consensus 261 ~IIf~~sr~~~e~La~~L~~~-gi~v~~~H~~l~~~eR~~vl~~F~----~g~~~VLVAT~a~g~GIDip~--V~~VI~~ 333 (724)
++|+++|.+..+.++..|... +.. ...++. ..|..+++.|+ .|+..||++|..|..|||+|+ +++||..
T Consensus 537 ~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~ 612 (697)
T PRK11747 537 SLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIIT 612 (697)
T ss_pred EEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEE
Confidence 899999999999999999753 333 344553 24667787776 467789999999999999996 7899988
Q ss_pred CCCC----C--------------------------HHHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 334 NIPK----S--------------------------MEAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 334 d~P~----S--------------------------~~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
.+|- + +..+.|.+||.-|....--.+++++.
T Consensus 613 kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~G~i~ilD~ 673 (697)
T PRK11747 613 KIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDRGRVTILDR 673 (697)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCceEEEEEEcc
Confidence 8772 1 12447888999998654445555554
No 145
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.46 E-value=3.2e-12 Score=150.24 Aligned_cols=306 Identities=16% Similarity=0.135 Sum_probs=200.2
Q ss_pred CCCHHHHHHHHHHH--c--CCcEEEEcCCCchHHHHHH-HHHH---cC--------CCeEEEEcCcHHHHHHHHHHHHHc
Q 004900 38 QFRDKQLDAIQAVL--S--GRDCFCLMPTGGGKSMCYQ-IPAL---AK--------PGIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 38 ~lr~~Q~eaI~ail--~--g~dvlv~apTGsGKTl~~~-lpal---~~--------~~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
.+|.||++.++.+. + +-+.|++-..|-||||-.+ +-+. .+ ....|||||. .|.-.|..++.++
T Consensus 975 ~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf 1053 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKF 1053 (1549)
T ss_pred HHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHh
Confidence 67889999988764 2 2478999999999998432 2221 12 2348999998 8889999999987
Q ss_pred CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHH
Q 004900 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSY 181 (724)
Q Consensus 102 gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y 181 (724)
--...++........+....... .+.+|++++.+.+.+. +..+. ...+.++|+||.|-|-.-.
T Consensus 1054 ~pfL~v~~yvg~p~~r~~lR~q~----~~~~iiVtSYDv~RnD-----~d~l~-~~~wNYcVLDEGHVikN~k------- 1116 (1549)
T KOG0392|consen 1054 FPFLKVLQYVGPPAERRELRDQY----KNANIIVTSYDVVRND-----VDYLI-KIDWNYCVLDEGHVIKNSK------- 1116 (1549)
T ss_pred cchhhhhhhcCChHHHHHHHhhc----cccceEEeeHHHHHHH-----HHHHH-hcccceEEecCcceecchH-------
Confidence 44333333333444444443332 2357888888876542 22111 1237899999999886521
Q ss_pred HHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEee------c------------------------------
Q 004900 182 RKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK------S------------------------------ 225 (724)
Q Consensus 182 ~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~------~------------------------------ 225 (724)
.++......+..-..+.||+|+-.+-.-+++..+.+--|..+- .
T Consensus 1117 tkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLH 1196 (1549)
T KOG0392|consen 1117 TKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALH 1196 (1549)
T ss_pred HHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHH
Confidence 3343333333345578999998765444444433221111100 0
Q ss_pred --------------------------------------------------------c---------------------CC
Q 004900 226 --------------------------------------------------------S---------------------FN 228 (724)
Q Consensus 226 --------------------------------------------------------s---------------------~~ 228 (724)
+ .+
T Consensus 1197 KqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcn 1276 (1549)
T KOG0392|consen 1197 KQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCN 1276 (1549)
T ss_pred HHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcC
Confidence 0 00
Q ss_pred CCceEEEEEecc------------------chhhHHHHHHHHHHhcC----------------CceEEEEecccccHHHH
Q 004900 229 RPNLFYEVRYKD------------------LLDDAYADLCSVLKANG----------------DTCAIVYCLERTTCDEL 274 (724)
Q Consensus 229 r~ni~~~v~~~~------------------~~~~k~~~L~~lLk~~~----------------~~~~IIf~~sr~~~e~L 274 (724)
.|-+...-...+ ....|+..|.++|...+ +.+++|||.-+...+-+
T Consensus 1277 HpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlV 1356 (1549)
T KOG0392|consen 1277 HPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLV 1356 (1549)
T ss_pred CcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHH
Confidence 000000000000 00124445556665432 34799999999999999
Q ss_pred HHHHHhCCC---ceeeecCCCCHHHHHHHHHHhhcC-CceEE-EEccccccccCCCCcceEEeeCCCCCHHHHHHHHccc
Q 004900 275 SAYLSAGGI---SCAAYHAGLNDKARSSVLDDWISS-RKQVV-VATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRA 349 (724)
Q Consensus 275 a~~L~~~gi---~v~~~H~~l~~~eR~~vl~~F~~g-~~~VL-VAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRA 349 (724)
.+.|.+.-. ....+.|..++.+|.++.++|.++ .++|| ++|-+.|-|+|+.+.+.||+++-.|++..-+|.+.||
T Consensus 1357 ekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRA 1436 (1549)
T KOG0392|consen 1357 EKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRA 1436 (1549)
T ss_pred HHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHH
Confidence 988876533 334678999999999999999998 78865 5688999999999999999999999999999999999
Q ss_pred CCCCCCCeEEEE
Q 004900 350 GRDQLPSKSLLY 361 (724)
Q Consensus 350 GRdG~~g~~il~ 361 (724)
.|-|+...+-+|
T Consensus 1437 HRIGQKrvVNVy 1448 (1549)
T KOG0392|consen 1437 HRIGQKRVVNVY 1448 (1549)
T ss_pred HhhcCceeeeee
Confidence 999988765544
No 146
>COG4889 Predicted helicase [General function prediction only]
Probab=99.43 E-value=2e-13 Score=155.17 Aligned_cols=311 Identities=18% Similarity=0.224 Sum_probs=174.5
Q ss_pred CCCCHHHHHHHHHHHcCC----cEEEEcCCCchHHHHHHHHH-HcCCCeEEEEcCcHHHHHHHHHHHHH---cCCceeee
Q 004900 37 AQFRDKQLDAIQAVLSGR----DCFCLMPTGGGKSMCYQIPA-LAKPGIVLVVSPLIALMENQVIGLKE---KGIAGEFL 108 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~----dvlv~apTGsGKTl~~~lpa-l~~~~~vLVlsPl~aL~~qqv~~l~~---~gi~~~~l 108 (724)
..|||+|++||.++.+|- ..=++|.+|+|||++.+-.+ .....++|+++|+++|..|..+.+.. +.+.+..+
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l~~~a~aV 239 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKELDFRASAV 239 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCccceeEEE
Confidence 579999999999999762 35678999999999876322 22348899999999999999988876 34455444
Q ss_pred cccchHHHH-----------------HHHHhhhh--cCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccc
Q 004900 109 SSTQTMQVK-----------------TKIYEDLD--SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (724)
Q Consensus 109 ~s~~~~~~~-----------------~~i~~~l~--~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~ 169 (724)
++....... ..+...+. ......-|++.|...+-+-+ . .+......+++||-||||+
T Consensus 240 cSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~---e-AQe~G~~~fDliicDEAHR 315 (1518)
T COG4889 240 CSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIK---E-AQEAGLDEFDLIICDEAHR 315 (1518)
T ss_pred ecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHH---H-HHHcCCCCccEEEecchhc
Confidence 443321110 01111111 01123445555555432211 1 1122345599999999998
Q ss_pred cccC---CCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhH---HHHH----HhhccCCCeEeeccCCCCc--------
Q 004900 170 ISSW---GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ---KDVM----ESLCLQNPLVLKSSFNRPN-------- 231 (724)
Q Consensus 170 l~~~---G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~---~di~----~~l~l~~~~vi~~s~~r~n-------- 231 (724)
-..- |.| ...+.++..- ........+.||||+.--.. .... ....|.+...+-..+.|-+
T Consensus 316 TtGa~~a~dd-~saFt~vHs~-~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~FgeAv~rd 393 (1518)
T COG4889 316 TTGATLAGDD-KSAFTRVHSD-QNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGEAVERD 393 (1518)
T ss_pred cccceecccC-cccceeecCc-chhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHHHHHhh
Confidence 7431 111 1111111000 00012235678888532110 0000 0001111111111111100
Q ss_pred --eEEEEEec-----------------cchhhHHHHHH-------HHHHhc--------------CCceEEEEecccccH
Q 004900 232 --LFYEVRYK-----------------DLLDDAYADLC-------SVLKAN--------------GDTCAIVYCLERTTC 271 (724)
Q Consensus 232 --i~~~v~~~-----------------~~~~~k~~~L~-------~lLk~~--------------~~~~~IIf~~sr~~~ 271 (724)
..|.|... ....-.++... -+.+.. +..++|-||.++++.
T Consensus 394 lLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k~I~tS 473 (1518)
T COG4889 394 LLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAKDIKTS 473 (1518)
T ss_pred hhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHHhhHHH
Confidence 01211110 00000111111 111211 123578999999988
Q ss_pred HHHHHHHHh-------------CCCc--eeeecCCCCHHHHHHHHH---HhhcCCceEEEEccccccccCCCCcceEEee
Q 004900 272 DELSAYLSA-------------GGIS--CAAYHAGLNDKARSSVLD---DWISSRKQVVVATVAFGMGIDRKDVRLVCHF 333 (724)
Q Consensus 272 e~La~~L~~-------------~gi~--v~~~H~~l~~~eR~~vl~---~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~ 333 (724)
..+++.+.. .++. +-+..|.|...+|...+. .|...+++||--..++.+|||+|..+-||++
T Consensus 474 K~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf 553 (1518)
T COG4889 474 KQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFF 553 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEe
Confidence 888776632 2333 445667899888855443 3456789999888999999999999999999
Q ss_pred CCCCCHHHHHHHHcccCCCC
Q 004900 334 NIPKSMEAFYQESGRAGRDQ 353 (724)
Q Consensus 334 d~P~S~~~yiQr~GRAGRdG 353 (724)
++-.++.+.+|.+||++|-.
T Consensus 554 ~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 554 DPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred cCchhHHHHHHHHHHHHHhC
Confidence 99999999999999999964
No 147
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=7e-11 Score=140.95 Aligned_cols=70 Identities=21% Similarity=0.285 Sum_probs=60.0
Q ss_pred HHcCCCCCCHHHHHHHHHHH----cCCcEEEEcCCCchHHHHHHHHHHc----CC--CeEEEEcCcHHHHHHHHHHHHHc
Q 004900 32 WHFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA----KP--GIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 32 ~~fG~~~lr~~Q~eaI~ail----~g~dvlv~apTGsGKTl~~~lpal~----~~--~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
-.|.|..+||.|.+.+..+. .|..+++.+|||+|||++.+.|++. .+ .++++.+.|.+-+.|.+++|++.
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~~ 83 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRKL 83 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHhh
Confidence 35889989999999886654 6789999999999999998888874 23 58999999999999999999883
No 148
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.39 E-value=4.1e-12 Score=147.33 Aligned_cols=324 Identities=20% Similarity=0.201 Sum_probs=224.7
Q ss_pred CCCCHHHHHHHHHHH---cC-CcEEEEcCCCchHHHH------HHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCcee
Q 004900 37 AQFRDKQLDAIQAVL---SG-RDCFCLMPTGGGKSMC------YQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail---~g-~dvlv~apTGsGKTl~------~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~ 106 (724)
..+++||...++.+. ++ -+.|+.-.+|-|||.. |++-.....|.-|||+|+-.|. .|..++..+.-.+.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~-NW~~Ef~kWaPSv~ 471 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLV-NWSSEFPKWAPSVQ 471 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccC-Cchhhcccccccee
Confidence 378999999998876 33 3678888999999963 3333333578899999998885 57777777766666
Q ss_pred eecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHH
Q 004900 107 FLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS 186 (724)
Q Consensus 107 ~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~ 186 (724)
.+....+...+..+...+..+. ++||.+|.|.+..+.- .|.++ .+.++||||.|+|..-- .+|..
T Consensus 472 ~i~YkGtp~~R~~l~~qir~gK--FnVLlTtyEyiikdk~--lLsKI----~W~yMIIDEGHRmKNa~-------~KLt~ 536 (1157)
T KOG0386|consen 472 KIQYKGTPQQRSGLTKQQRHGK--FNVLLTTYEYIIKDKA--LLSKI----SWKYMIIDEGHRMKNAI-------CKLTD 536 (1157)
T ss_pred eeeeeCCHHHHhhHHHHHhccc--ceeeeeeHHHhcCCHH--HHhcc----CCcceeecccccccchh-------hHHHH
Confidence 6666677778887877777764 9999999998776431 12222 37789999999997621 33433
Q ss_pred HHh-hCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc------CC-------------------------------
Q 004900 187 LRN-YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS------FN------------------------------- 228 (724)
Q Consensus 187 l~~-~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s------~~------------------------------- 228 (724)
... .+.....+++|+|+..+-...++..|++--|.++... |+
T Consensus 537 ~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPF 616 (1157)
T KOG0386|consen 537 TLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPF 616 (1157)
T ss_pred HhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHH
Confidence 333 3344456788888766655555555554443333210 00
Q ss_pred --------------------------------------------------------------------CCceEEEE----
Q 004900 229 --------------------------------------------------------------------RPNLFYEV---- 236 (724)
Q Consensus 229 --------------------------------------------------------------------r~ni~~~v---- 236 (724)
.|.++-.+
T Consensus 617 lLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~ 696 (1157)
T KOG0386|consen 617 LLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSY 696 (1157)
T ss_pred HHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccc
Confidence 00000000
Q ss_pred Eec--c----chhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCC
Q 004900 237 RYK--D----LLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (724)
Q Consensus 237 ~~~--~----~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~ 308 (724)
... . ....++..|.++|.+ ..+.+++.||.-..-...+..+|.-.++...-+.|....++|-..++.|....
T Consensus 697 ~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 697 TLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred ccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 000 0 001223333333332 23567899998888888888999888888999999999999999999999654
Q ss_pred c---eEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHh
Q 004900 309 K---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 309 ~---~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
. ..|..|.+.|.|+|+.-.+.||.||..+++....|+--||.|.|+...+-++....--..-+.|++.
T Consensus 777 s~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~tv~sveE~il~~ 847 (1157)
T KOG0386|consen 777 SPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLITVNSVEEKILAE 847 (1157)
T ss_pred CceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeehhhHHHHHHHHH
Confidence 3 4688999999999999999999999999999999999999999998888777654444444444443
No 149
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.38 E-value=7.7e-11 Score=127.85 Aligned_cols=320 Identities=17% Similarity=0.216 Sum_probs=186.3
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHH------cCCCeEEEEcCc
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPL 87 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal------~~~~~vLVlsPl 87 (724)
...|...+-.+...+.|++.--.. .+..+.+-+..+.+++-+++++.||+|||. |+|-. ...+-+...-|.
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LP-vw~~k~~F~~~l~~nQ~~v~vGetgsGKtt--QiPq~~~~~~~~~~~~v~CTQpr 100 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELP-VWEQKEEFLKLLLNNQIIVLVGETGSGKTT--QIPQFVLEYELSHLTGVACTQPR 100 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCc-hHHhHHHHHHHHhcCceEEEEecCCCCccc--cCcHHHHHHHHhhccceeecCch
Confidence 344555667778888888863332 345556667777788889999999999996 33321 123444455588
Q ss_pred HHHHHHHHHHHHH-cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhH-HHHHHhhhhcCCccEEEEc
Q 004900 88 IALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAID 165 (724)
Q Consensus 88 ~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~-l~~L~~~~~~~~l~lIVID 165 (724)
+.-+.+...+... +.+...- ...... -.++..+ +..-+-| +|.+. +.........+..++||+|
T Consensus 101 rvaamsva~RVadEMDv~lG~---EVGysI---rfEdC~~--~~T~Lky------~tDgmLlrEams~p~l~~y~viiLD 166 (699)
T KOG0925|consen 101 RVAAMSVAQRVADEMDVTLGE---EVGYSI---RFEDCTS--PNTLLKY------CTDGMLLREAMSDPLLGRYGVIILD 166 (699)
T ss_pred HHHHHHHHHHHHHHhccccch---hccccc---cccccCC--hhHHHHH------hcchHHHHHHhhCcccccccEEEec
Confidence 7776666555433 2211100 000000 0000000 0111112 33332 2223344456678999999
Q ss_pred cccccccCCCCChHH--HHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCC-ceEEEEE-eccc
Q 004900 166 EAHCISSWGHDFRPS--YRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRP-NLFYEVR-YKDL 241 (724)
Q Consensus 166 EAH~l~~~G~dFrp~--y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~-ni~~~v~-~~~~ 241 (724)
|||.-.- ..+ ..-|..++...|+..++.+|||+...-. ..++ .++-++..+-..| .++|.-. ..+.
T Consensus 167 eahERtl-----ATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kf---q~yf--~n~Pll~vpg~~PvEi~Yt~e~erDy 236 (699)
T KOG0925|consen 167 EAHERTL-----ATDILMGLLKEVVRNRPDLKLVVMSATLDAEKF---QRYF--GNAPLLAVPGTHPVEIFYTPEPERDY 236 (699)
T ss_pred hhhhhhH-----HHHHHHHHHHHHHhhCCCceEEEeecccchHHH---HHHh--CCCCeeecCCCCceEEEecCCCChhH
Confidence 9996321 111 1234555666689999999999875432 3333 2333333322222 2322211 1222
Q ss_pred hhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC---------CCceeeecCCCCHHHHHHHHHHhh---cC--
Q 004900 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG---------GISCAAYHAGLNDKARSSVLDDWI---SS-- 307 (724)
Q Consensus 242 ~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~---------gi~v~~~H~~l~~~eR~~vl~~F~---~g-- 307 (724)
.+..+..+.++-.....+-++||....++.+...+.+... .+.|..+| +.++..+.+--. +|
T Consensus 237 lEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~ 312 (699)
T KOG0925|consen 237 LEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAY 312 (699)
T ss_pred HHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCc
Confidence 3333444444433344567999999988888777777632 24577777 333333322221 12
Q ss_pred CceEEEEccccccccCCCCcceEEeeCC------------------CCCHHHHHHHHcccCCCCCCCeEEEEEccc
Q 004900 308 RKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (724)
Q Consensus 308 ~~~VLVAT~a~g~GIDip~V~~VI~~d~------------------P~S~~~yiQr~GRAGRdG~~g~~il~~~~~ 365 (724)
.-+|+|+|+++...+-+++|.+||.-++ |-|-.+-.||.|||||. .+|.|+-+|...
T Consensus 313 ~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 313 GRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred cceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 2479999999999999999999997664 44778889999999998 599999999854
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.34 E-value=6.5e-11 Score=139.98 Aligned_cols=123 Identities=23% Similarity=0.222 Sum_probs=97.9
Q ss_pred hhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc
Q 004900 243 DDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM 320 (724)
Q Consensus 243 ~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~ 320 (724)
..++..+.+-+.. ..+.|+||-|.|++..+.|+..|...|++...+++.....+-.-|-+.=+. ..|.|||+.+||
T Consensus 611 ~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~~--GaVTIATNMAGR 688 (1112)
T PRK12901 611 REKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQP--GTVTIATNMAGR 688 (1112)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCCC--CcEEEeccCcCC
Confidence 3566666655443 357899999999999999999999999998888887554443333333222 358999999999
Q ss_pred ccCCC--------CcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 321 GIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 321 GIDip--------~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
|-|+. +==+||-...+.|..---|-.||+||.|.||.+..|++.+|-
T Consensus 689 GTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLEDd 743 (1112)
T PRK12901 689 GTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDN 743 (1112)
T ss_pred CcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEcccH
Confidence 99986 224789999999999999999999999999999999987764
No 151
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.34 E-value=2.8e-11 Score=142.70 Aligned_cols=309 Identities=19% Similarity=0.261 Sum_probs=203.7
Q ss_pred CCCCHHHHHHHHHHHcC-CcEEEEcCCCchHHHHHHHHHHcC--CCeEEEEcCcHHHHHHHHHHHHH-----cCCceeee
Q 004900 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALAK--PGIVLVVSPLIALMENQVIGLKE-----KGIAGEFL 108 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g-~dvlv~apTGsGKTl~~~lpal~~--~~~vLVlsPl~aL~~qqv~~l~~-----~gi~~~~l 108 (724)
..+.|.|.++++.+.+. .+++|.+|+|+|||.|+-+..+.. .++++.|.|.-+.+..+++.+.+ .|.....+
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l 1221 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKL 1221 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEec
Confidence 34588999999988865 568899999999999998877753 46899999998888777766655 24444444
Q ss_pred cccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHH---HH
Q 004900 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK---LS 185 (724)
Q Consensus 109 ~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~---L~ 185 (724)
.+..+.+.+-. . .-++++.|||.... +. ....++++|.||.|.+.... -+.|.. +.
T Consensus 1222 ~ge~s~~lkl~-----~----~~~vii~tpe~~d~------lq---~iQ~v~l~i~d~lh~igg~~---g~v~evi~S~r 1280 (1674)
T KOG0951|consen 1222 TGETSLDLKLL-----Q----KGQVIISTPEQWDL------LQ---SIQQVDLFIVDELHLIGGVY---GAVYEVICSMR 1280 (1674)
T ss_pred CCccccchHHh-----h----hcceEEechhHHHH------Hh---hhhhcceEeeehhhhhcccC---CceEEEEeeHH
Confidence 44444332211 1 14677777775432 22 23348999999999997421 222221 11
Q ss_pred HHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC-CCc-eEEEEEeccc--h--------hhHHHHHHHH
Q 004900 186 SLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN-RPN-LFYEVRYKDL--L--------DDAYADLCSV 252 (724)
Q Consensus 186 ~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~-r~n-i~~~v~~~~~--~--------~~k~~~L~~l 252 (724)
.+..++ .++.++++|..++.. +++ +|.....++..+++ ||+ +...+...+. . ...+..+.+.
T Consensus 1281 ~ia~q~~k~ir~v~ls~~lana--~d~---ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~ 1355 (1674)
T KOG0951|consen 1281 YIASQLEKKIRVVALSSSLANA--RDL---IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH 1355 (1674)
T ss_pred HHHHHHHhheeEEEeehhhccc--hhh---ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH
Confidence 222222 378899999987765 333 67766667766554 333 2222222111 1 1223333333
Q ss_pred HHhcCCceEEEEecccccHHHHHHHHHhC----------------------CCceeeecCCCCHHHHHHHHHHhhcCCce
Q 004900 253 LKANGDTCAIVYCLERTTCDELSAYLSAG----------------------GISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (724)
Q Consensus 253 Lk~~~~~~~IIf~~sr~~~e~La~~L~~~----------------------gi~v~~~H~~l~~~eR~~vl~~F~~g~~~ 310 (724)
.. .+.++|||++++++|..+|..|-.. .++...=|-+++..+.+-+..-|..|.++
T Consensus 1356 a~--~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~ 1433 (1674)
T KOG0951|consen 1356 AG--NRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQ 1433 (1674)
T ss_pred hc--CCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEE
Confidence 22 4568999999999998887655211 11222238899999989999999999999
Q ss_pred EEEEccccccccCCCCcceEEe-----eC------CCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhcc
Q 004900 311 VVVATVAFGMGIDRKDVRLVCH-----FN------IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (724)
Q Consensus 311 VLVAT~a~g~GIDip~V~~VI~-----~d------~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~ 378 (724)
|+|...- .+|+-... ..||- || .+.++.+..|+.|+|.| .|.|+++....+...++..+.+..
T Consensus 1434 v~v~s~~-~~~~~~~~-~lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e~l 1507 (1674)
T KOG0951|consen 1434 VCVMSRD-CYGTKLKA-HLVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYEPL 1507 (1674)
T ss_pred EEEEEcc-cccccccc-eEEEEecceeecccccccccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccCcC
Confidence 9998777 77877543 33442 22 46679999999999988 478999999988888877766543
No 152
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.28 E-value=2.2e-11 Score=112.60 Aligned_cols=136 Identities=29% Similarity=0.308 Sum_probs=88.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHc-----CCCeEEEEcCcHHHHHHHHHHHHHcC---CceeeecccchHHHHHHHHhhhh
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG---IAGEFLSSTQTMQVKTKIYEDLD 125 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~-----~~~~vLVlsPl~aL~~qqv~~l~~~g---i~~~~l~s~~~~~~~~~i~~~l~ 125 (724)
+.+++.+|||+|||.++...+.. ..+.++|++|+..++.++.+.+.... +................. .
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----L 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH----h
Confidence 36899999999999987765543 35789999999999999998888755 555555544333322211 1
Q ss_pred cCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecC
Q 004900 126 SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (724)
Q Consensus 126 ~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~ 203 (724)
.....++++|++.+...... .......+++|||||+|.+.... +.... ........+..+++++|||+
T Consensus 77 --~~~~~i~i~t~~~~~~~~~~----~~~~~~~~~~iiiDE~h~~~~~~--~~~~~--~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 --SGKTDIVVGTPGRLLDELER----LKLSLKKLDLLILDEAHRLLNQG--FGLLG--LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred --cCCCCEEEECcHHHHHHHHc----CCcchhcCCEEEEeCHHHHhhcc--hHHHH--HHHHhhCCccceEEEEeccC
Confidence 12467888888765422111 01123458899999999987632 11111 12233445678899999996
No 153
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.19 E-value=1.6e-09 Score=128.88 Aligned_cols=92 Identities=25% Similarity=0.243 Sum_probs=71.2
Q ss_pred EEEEecccccHHHHHHHHHhC----C--CceeeecCCCCHHHHHHHHHHh----------------------hc----CC
Q 004900 261 AIVYCLERTTCDELSAYLSAG----G--ISCAAYHAGLNDKARSSVLDDW----------------------IS----SR 308 (724)
Q Consensus 261 ~IIf~~sr~~~e~La~~L~~~----g--i~v~~~H~~l~~~eR~~vl~~F----------------------~~----g~ 308 (724)
++|-+.+++.+-.+|..|-.. + +.+..||+......|..+.+.. .+ +.
T Consensus 759 GliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 759 GLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 688889999999999888754 2 3467899999877776655442 11 46
Q ss_pred ceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCC
Q 004900 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355 (724)
Q Consensus 309 ~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~ 355 (724)
..|+|+|++.+.|+|+ |.+++| .-|.++...+|++||+.|.|..
T Consensus 839 ~~i~v~Tqv~E~g~D~-dfd~~~--~~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDH-DYDWAI--ADPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEecc-cCCeee--eccCcHHHHHHHhhcccccccC
Confidence 7899999999999996 455444 4577899999999999998863
No 154
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.19 E-value=7.5e-10 Score=124.36 Aligned_cols=105 Identities=21% Similarity=0.249 Sum_probs=92.3
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCc-eEEEEccccccccCCCCcceEEeeCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK-QVVVATVAFGMGIDRKDVRLVCHFNI 335 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~-~VLVAT~a~g~GIDip~V~~VI~~d~ 335 (724)
.+.++|+|+.-.+..+-+.++|.-.|+...-+.|.....+|..++.+|+..++ ..|++|.|.|.|||+...+.||+||.
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdS 1122 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDS 1122 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEEecC
Confidence 34567778777777888888888888888999999999999999999997654 56889999999999999999999999
Q ss_pred CCCHHHHHHHHcccCCCCCCCeEEEE
Q 004900 336 PKSMEAFYQESGRAGRDQLPSKSLLY 361 (724)
Q Consensus 336 P~S~~~yiQr~GRAGRdG~~g~~il~ 361 (724)
.+++..-.|...||.|-|+...+.+|
T Consensus 1123 DWNPT~D~QAMDRAHRLGQTrdvtvy 1148 (1185)
T KOG0388|consen 1123 DWNPTADQQAMDRAHRLGQTRDVTVY 1148 (1185)
T ss_pred CCCcchhhHHHHHHHhccCccceeee
Confidence 99999999999999999987765554
No 155
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.04 E-value=6.3e-09 Score=117.51 Aligned_cols=91 Identities=13% Similarity=0.144 Sum_probs=78.8
Q ss_pred HHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhc--CCceE-EEEccccccccCCCCcceEEeeCCCCCHHHHHHHHc
Q 004900 271 CDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS--SRKQV-VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESG 347 (724)
Q Consensus 271 ~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~--g~~~V-LVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~G 347 (724)
..-+...|++.|.....+||....++|..+++.|.. |..+| |+.-.+-|.|+|+-..+++|..|+-+++.-=-|...
T Consensus 759 Lniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcD 838 (901)
T KOG4439|consen 759 LNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACD 838 (901)
T ss_pred HHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHH
Confidence 344556777788889999999999999999999983 54454 566788999999999999999999999999999999
Q ss_pred ccCCCCCCCeEEEE
Q 004900 348 RAGRDQLPSKSLLY 361 (724)
Q Consensus 348 RAGRdG~~g~~il~ 361 (724)
|..|.|+...++++
T Consensus 839 RIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 839 RIYRMGQKKDVFIH 852 (901)
T ss_pred HHHHhcccCceEEE
Confidence 99999998887765
No 156
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.01 E-value=1.2e-08 Score=124.39 Aligned_cols=103 Identities=20% Similarity=0.211 Sum_probs=94.9
Q ss_pred eEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcC--CceEEEEccccccccCCCCcceEEeeCCCC
Q 004900 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS--RKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (724)
Q Consensus 260 ~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g--~~~VLVAT~a~g~GIDip~V~~VI~~d~P~ 337 (724)
++|||+......+-+...|...++....++|.++.+.|...++.|.++ ...+++.|.+.|.|+|+-..+.||++|+.+
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w 792 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW 792 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc
Confidence 799999999999999999999998899999999999999999999986 456778888999999999999999999999
Q ss_pred CHHHHHHHHcccCCCCCCCeEEEEE
Q 004900 338 SMEAFYQESGRAGRDQLPSKSLLYY 362 (724)
Q Consensus 338 S~~~yiQr~GRAGRdG~~g~~il~~ 362 (724)
++....|...|+.|.|+...+.+|-
T Consensus 793 np~~~~Qa~dRa~RigQ~~~v~v~r 817 (866)
T COG0553 793 NPAVELQAIDRAHRIGQKRPVKVYR 817 (866)
T ss_pred ChHHHHHHHHHHHHhcCcceeEEEE
Confidence 9999999999999999988766653
No 157
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.98 E-value=1.4e-08 Score=110.70 Aligned_cols=107 Identities=17% Similarity=0.191 Sum_probs=91.1
Q ss_pred ceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcC-Cce-EEEEccccccccCCCCcceEEeeCCC
Q 004900 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGIDRKDVRLVCHFNIP 336 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g-~~~-VLVAT~a~g~GIDip~V~~VI~~d~P 336 (724)
-+.|||-.-....+-+...|.+.|+.|+-+-|+|++..|...++.|++. .+. .||+-.|.|..+|+-....|+..|+=
T Consensus 639 ~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPW 718 (791)
T KOG1002|consen 639 AKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPW 718 (791)
T ss_pred hhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeeccc
Confidence 4578888777778888888899999999999999999999999999964 455 46778899999999999999999988
Q ss_pred CCHHHHHHHHcccCCCCC--CCeEEEEEccc
Q 004900 337 KSMEAFYQESGRAGRDQL--PSKSLLYYGMD 365 (724)
Q Consensus 337 ~S~~~yiQr~GRAGRdG~--~g~~il~~~~~ 365 (724)
+++.--.|...|..|-|+ |-..+.|+-.+
T Consensus 719 WNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn 749 (791)
T KOG1002|consen 719 WNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN 749 (791)
T ss_pred ccHHHHhhhhhhHHhhcCccceeEEEeehhc
Confidence 999999999999999987 45566666544
No 158
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=98.96 E-value=6e-08 Score=113.98 Aligned_cols=120 Identities=17% Similarity=0.201 Sum_probs=105.1
Q ss_pred CceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCC--ceEEEEccccccccCCCCcceEEeeCC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNI 335 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~--~~VLVAT~a~g~GIDip~V~~VI~~d~ 335 (724)
+.++|||+.-.+..+-|..+|.-+|+...-+.|...-++|...+++|..+. ...|++|-.-|.|||+-+.+.||+||-
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDs 1355 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDS 1355 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecC
Confidence 468999999999999999999999999999999999999999999999754 356788999999999999999999999
Q ss_pred CCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 336 PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 336 P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
.+++..-.|.-.|+.|-|+...+.+|--..+...-+.|+++.
T Consensus 1356 DwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1356 DWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred CCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhhh
Confidence 999999999999999999988888886666655556666654
No 159
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.92 E-value=7.9e-09 Score=109.76 Aligned_cols=161 Identities=19% Similarity=0.106 Sum_probs=96.9
Q ss_pred HHHHHHHHHH-------------cCCcEEEEcCCCchHHHHHHHHHH--c-C--C---CeEEEEcCcHHHHHHHHHHHHH
Q 004900 42 KQLDAIQAVL-------------SGRDCFCLMPTGGGKSMCYQIPAL--A-K--P---GIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 42 ~Q~eaI~ail-------------~g~dvlv~apTGsGKTl~~~lpal--~-~--~---~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
+|.+++..++ ..+.+|+...+|.|||+..+..+. . . . ..+|||+|. +++.+|..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 5777777663 235688888999999987655443 1 1 1 259999999 888999999999
Q ss_pred cCC----ceeeecccchHHHHHHHHhhhhcCCCCccEEEeCccccc---ChhHHHHHHhhhhcCCccEEEEccccccccC
Q 004900 101 KGI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (724)
Q Consensus 101 ~gi----~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~---T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~ 173 (724)
+.. +.....+.. ..............++++|.+.+. .+.....+.. ..+++|||||+|.+...
T Consensus 80 ~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~----~~~~~vIvDEaH~~k~~ 149 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDS------ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ----IKWDRVIVDEAHRLKNK 149 (299)
T ss_dssp HSGT-TS-EEEESSSC------HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT----SEEEEEEETTGGGGTTT
T ss_pred cccccccccccccccc------ccccccccccccceeeecccccccccccccccccccc----ccceeEEEecccccccc
Confidence 752 333333322 111112223345789999988777 2222223322 33899999999999654
Q ss_pred CCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCC
Q 004900 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNP 220 (724)
Q Consensus 174 G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~ 220 (724)
.. .+......+....+++||||+..+...++...+.+-.+
T Consensus 150 ~s-------~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~ 189 (299)
T PF00176_consen 150 DS-------KRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNP 189 (299)
T ss_dssp TS-------HHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCT
T ss_pred cc-------cccccccccccceEEeeccccccccccccccchheeec
Confidence 32 22222233446778999999999887888777765544
No 160
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.90 E-value=7.1e-08 Score=112.63 Aligned_cols=281 Identities=17% Similarity=0.216 Sum_probs=167.3
Q ss_pred EEEEcCCCchHHHHHHHHHH----cCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCc
Q 004900 56 CFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSL 131 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lpal----~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~ 131 (724)
.++.+|+|+|||....-+.- .....+|||+-.++|+.+...+++..|+............. +. + ...
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~-------i~-~-~~~ 122 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI-------ID-G-RPY 122 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc-------cc-c-ccc
Confidence 57889999999986554442 24689999999999999999999987764322221111100 00 0 013
Q ss_pred cEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHH-------HHHHHhhCCCCCEEEEeecCC
Q 004900 132 RLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK-------LSSLRNYLPDVPILALTATAA 204 (724)
Q Consensus 132 ~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~-------L~~l~~~~p~~pil~LSAT~~ 204 (724)
+-+.++.+.+.. +.. ......++|||||+--+.. |=|-+..++ +..+... ...+|++-||+.
T Consensus 123 ~rLivqIdSL~R------~~~-~~l~~yDvVIIDEv~svL~--qL~S~Tm~~~~~v~~~L~~lI~~--ak~VI~~DA~ln 191 (824)
T PF02399_consen 123 DRLIVQIDSLHR------LDG-SLLDRYDVVIIDEVMSVLN--QLFSPTMRQREEVDNLLKELIRN--AKTVIVMDADLN 191 (824)
T ss_pred CeEEEEehhhhh------ccc-ccccccCEEEEehHHHHHH--HHhHHHHhhHHHHHHHHHHHHHh--CCeEEEecCCCC
Confidence 444444443321 110 1123478999999976654 113233222 3333332 345899999999
Q ss_pred hhhHHHHHHhhccCCCeEeeccCCCCce------EEEEE---------------------------------eccchhhH
Q 004900 205 PKVQKDVMESLCLQNPLVLKSSFNRPNL------FYEVR---------------------------------YKDLLDDA 245 (724)
Q Consensus 205 ~~v~~di~~~l~l~~~~vi~~s~~r~ni------~~~v~---------------------------------~~~~~~~k 245 (724)
....+.+...-+-.+..++...+..++. ...-. ........
T Consensus 192 ~~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF 271 (824)
T PF02399_consen 192 DQTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTF 271 (824)
T ss_pred HHHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhH
Confidence 9988766554333332233322211110 00000 00000122
Q ss_pred HHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCC
Q 004900 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (724)
Q Consensus 246 ~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip 325 (724)
+..|..-|. .+.++-||+.|...++.+++.....+..+..+++.-+..+ + +.| ++.+|++=|.+...|+++.
T Consensus 272 ~~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 272 FSELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred HHHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccc
Confidence 333333333 3456779999999999999999988888898988766552 2 334 5688999999999999987
Q ss_pred Ccce--EEee--CCC--CCHHHHHHHHcccCCCCCCCeEEEEEccc
Q 004900 326 DVRL--VCHF--NIP--KSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (724)
Q Consensus 326 ~V~~--VI~~--d~P--~S~~~yiQr~GRAGRdG~~g~~il~~~~~ 365 (724)
...+ |.-| ... .++.+.+|.+||+-.- .....++|++..
T Consensus 344 ~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l-~~~ei~v~~d~~ 388 (824)
T PF02399_consen 344 EKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSL-LDNEIYVYIDAS 388 (824)
T ss_pred hhhceEEEEEecCCCCCCcHHHHHHHHHHHHhh-ccCeEEEEEecc
Confidence 6543 3333 222 4677899999999544 345667777654
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.87 E-value=2.7e-07 Score=108.43 Aligned_cols=327 Identities=19% Similarity=0.183 Sum_probs=193.3
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHH---H-HH
Q 004900 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIG---L-KE 100 (724)
Q Consensus 28 ~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~---l-~~ 100 (724)
.+-+..+|.. |+=.+.+..+.-+..-++-|.||-||||+..+|+.. .+.-+.||+..--||.--... + .-
T Consensus 71 Ea~~Rvlg~~---~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~ 147 (822)
T COG0653 71 EASKRVLGMR---HFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEF 147 (822)
T ss_pred HHHHHhcCCC---hhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHH
Confidence 4445555654 444666677766777899999999999999999874 466788888887777643333 3 33
Q ss_pred cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH---HhhhhcCCccEEEEccccccc------
Q 004900 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS------ 171 (724)
Q Consensus 101 ~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L---~~~~~~~~l~lIVIDEAH~l~------ 171 (724)
+|..+.+....+...++...+. .+|.|+|.--+.-......+ ..-.-+..+.+.||||++.|+
T Consensus 148 LGlsvG~~~~~m~~~ek~~aY~--------~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSILIDEARt 219 (822)
T COG0653 148 LGLSVGVILAGMSPEEKRAAYA--------CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSILIDEART 219 (822)
T ss_pred cCCceeeccCCCChHHHHHHHh--------cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhheeeecccc
Confidence 7899999988888888887765 67888887655443222222 111123357888999998774
Q ss_pred ----cCCCCCh-HHHHHHHHHHhhCCC---------CCEEEEeecCChhhHH-----------------HHH-----Hhh
Q 004900 172 ----SWGHDFR-PSYRKLSSLRNYLPD---------VPILALTATAAPKVQK-----------------DVM-----ESL 215 (724)
Q Consensus 172 ----~~G~dFr-p~y~~L~~l~~~~p~---------~pil~LSAT~~~~v~~-----------------di~-----~~l 215 (724)
.|...++ ..|..+..+...+.. ...+.||-.-..+... .+. ..+
T Consensus 220 PLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~en~~~~h~~~~alrA~~l 299 (822)
T COG0653 220 PLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLENVNLVHHLNQALRAHIL 299 (822)
T ss_pred ceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchhhHHHHhhHHHHHHHHHH
Confidence 2322222 335555555433211 1122222221000000 000 000
Q ss_pred ccC-----------------------------------------------------------------------------
Q 004900 216 CLQ----------------------------------------------------------------------------- 218 (724)
Q Consensus 216 ~l~----------------------------------------------------------------------------- 218 (724)
...
T Consensus 300 ~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~ 379 (822)
T COG0653 300 FFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEE 379 (822)
T ss_pred hhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhh
Confidence 000
Q ss_pred ------CCeEeeccCCCCceEEEEEe--ccchhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCCceeee
Q 004900 219 ------NPLVLKSSFNRPNLFYEVRY--KDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (724)
Q Consensus 219 ------~~~vi~~s~~r~ni~~~v~~--~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~ 288 (724)
+-.++..+.++|.+...... -.....++..+...+.. ..+.|+||-+.+.+..+.+...|.+.|++-..+
T Consensus 380 EF~~iY~l~vv~iPTnrp~~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VL 459 (822)
T COG0653 380 EFDVIYGLDVVVIPTNRPIIRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVL 459 (822)
T ss_pred hhhhccCCceeeccCCCcccCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceee
Confidence 01111122223322111100 01123455555544433 357899999999999999999999999987777
Q ss_pred cCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcc-----------eEEeeCCCCCHHHHHHHHcccCCCCCCCe
Q 004900 289 HAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVR-----------LVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (724)
Q Consensus 289 H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~-----------~VI~~d~P~S~~~yiQr~GRAGRdG~~g~ 357 (724)
.+.-...+=..+.+. .-..-|-|||+.+|+|-|+.--. +||-..--.|-.---|--||+||.|-||.
T Consensus 460 NAk~h~~EA~Iia~A--G~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQGDpG~ 537 (822)
T COG0653 460 NAKNHAREAEIIAQA--GQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGS 537 (822)
T ss_pred ccccHHHHHHHHhhc--CCCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCCCcch
Confidence 776554443333322 22234789999999999975221 24433333444555699999999999999
Q ss_pred EEEEEccccH
Q 004900 358 SLLYYGMDDR 367 (724)
Q Consensus 358 ~il~~~~~D~ 367 (724)
+..|++-+|-
T Consensus 538 S~F~lSleD~ 547 (822)
T COG0653 538 SRFYLSLEDD 547 (822)
T ss_pred hhhhhhhHHH
Confidence 9888886664
No 162
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=98.71 E-value=8e-07 Score=103.19 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=90.4
Q ss_pred CceEEEEecccccHHHHHHHHHh----------------------CCCceeeecCCCCHHHHHHHHHHhhcCC---c-eE
Q 004900 258 DTCAIVYCLERTTCDELSAYLSA----------------------GGISCAAYHAGLNDKARSSVLDDWISSR---K-QV 311 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~----------------------~gi~v~~~H~~l~~~eR~~vl~~F~~g~---~-~V 311 (724)
+.+.|||-.+....+-+..+|.- .|.....+.|......|..+.+.|.+-. . -.
T Consensus 1142 GDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~ 1221 (1567)
T KOG1015|consen 1142 GDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLF 1221 (1567)
T ss_pred cceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEE
Confidence 56899999999999988888853 1334567889999999999999998632 1 37
Q ss_pred EEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEE
Q 004900 312 VVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (724)
Q Consensus 312 LVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~ 361 (724)
||+|.|.+.|||+-..+.||.||..|++.--.|-+=|+-|.|+..-|++|
T Consensus 1222 LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1222 LISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred EEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 89999999999999999999999999999999999999999998888776
No 163
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.67 E-value=1.7e-05 Score=88.67 Aligned_cols=240 Identities=15% Similarity=0.198 Sum_probs=156.7
Q ss_pred EeCcccccChhHHHHHHh--------hhhcCCccEEEEcccccccc--CCCCChHHH------------HHHHHHHhhCC
Q 004900 135 YVTPELTATPGFMSKLKK--------IHSRGLLNLVAIDEAHCISS--WGHDFRPSY------------RKLSSLRNYLP 192 (724)
Q Consensus 135 ~~TPE~i~T~~~l~~L~~--------~~~~~~l~lIVIDEAH~l~~--~G~dFrp~y------------~~L~~l~~~~p 192 (724)
|.+..+|++|--+..+.. ...+..+.++|||.||.+.- |.| ....+ ..+.+++.++-
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~H-v~~v~~~lN~~P~~~~~~DfsRVR~w~L 208 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEH-VLHVFEHLNLQPKKSHDTDFSRVRPWYL 208 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHH-HHHHHHHhccCCCCCCCCCHHHHHHHHH
Confidence 344556666644333321 12234488999999998863 432 00000 11122222221
Q ss_pred ------CCCEEEEeecCChhhHHHHHHh-hccCCCeEeeccC-----------CCCceEEEEEecc---chhhHHHHHHH
Q 004900 193 ------DVPILALTATAAPKVQKDVMES-LCLQNPLVLKSSF-----------NRPNLFYEVRYKD---LLDDAYADLCS 251 (724)
Q Consensus 193 ------~~pil~LSAT~~~~v~~di~~~-l~l~~~~vi~~s~-----------~r~ni~~~v~~~~---~~~~k~~~L~~ 251 (724)
-+|.|++|+..+|+....+... .+....+.+.... .-+.++..+.... ..+..++.+..
T Consensus 209 dg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~ 288 (442)
T PF06862_consen 209 DGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTK 288 (442)
T ss_pred cCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHH
Confidence 2679999999999987755542 2222222221111 1222333332221 12333333322
Q ss_pred ----HHH-hcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc--cccccCC
Q 004900 252 ----VLK-ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDR 324 (724)
Q Consensus 252 ----lLk-~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a--~g~GIDi 324 (724)
-+. ......+|||++|--+--.|-++|++.++....+|--.+..+-...-..|..|+..||+-|.= |=+=..+
T Consensus 289 ~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~i 368 (442)
T PF06862_consen 289 KILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRI 368 (442)
T ss_pred HHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhcee
Confidence 223 344567999999999999999999999999999999999999888889999999999999975 3445678
Q ss_pred CCcceEEeeCCCCCHHHHHHHHcccCCCCC------CCeEEEEEccccHHHHHHHHH
Q 004900 325 KDVRLVCHFNIPKSMEAFYQESGRAGRDQL------PSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 325 p~V~~VI~~d~P~S~~~yiQr~GRAGRdG~------~g~~il~~~~~D~~~~~~i~~ 375 (724)
.+|+.||.|++|..+.-|-..++-.+.... ...|.++|+.=|.-.++.|+-
T Consensus 369 rGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 369 RGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERIVG 425 (442)
T ss_pred cCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHHhC
Confidence 889999999999999888777765554433 578999999999888888774
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.60 E-value=1.1e-05 Score=99.21 Aligned_cols=282 Identities=20% Similarity=0.203 Sum_probs=152.5
Q ss_pred CcEEEEcCCCchHHHHHHHHH-----HcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCC
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA-----LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa-----l~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~ 128 (724)
+..+++=-||||||++....| ....+.++||+-.+.|-.|..+.+..++..+.......+.......+.. +
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~~~~s~~~Lk~~l~~---~- 349 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDPKAESTSELKELLED---G- 349 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcccccCHHHHHHHHhc---C-
Confidence 458899999999998754333 2356889999999999999999999976544332223333333333332 2
Q ss_pred CCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhH
Q 004900 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (724)
Q Consensus 129 ~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~ 208 (724)
.-.|+++|-..+.....-. ......+.=-+||+||||+ ++.|. .-..+...+++..+++||+||.-.--
T Consensus 350 -~~~ii~TTIQKf~~~~~~~--~~~~~~~~~ivvI~DEaHR-SQ~G~-------~~~~~~~~~~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 350 -KGKIIVTTIQKFNKAVKED--ELELLKRKNVVVIIDEAHR-SQYGE-------LAKLLKKALKKAIFIGFTGTPIFKED 418 (962)
T ss_pred -CCcEEEEEecccchhhhcc--cccccCCCcEEEEEechhh-ccccH-------HHHHHHHHhccceEEEeeCCcccccc
Confidence 2468888876654321110 0000112234689999997 55552 22335777888999999999865432
Q ss_pred HHH-HHhhccC-CCeEeeccCCCC---ceEEEEE-eccch-----------h----------------------------
Q 004900 209 KDV-MESLCLQ-NPLVLKSSFNRP---NLFYEVR-YKDLL-----------D---------------------------- 243 (724)
Q Consensus 209 ~di-~~~l~l~-~~~vi~~s~~r~---ni~~~v~-~~~~~-----------~---------------------------- 243 (724)
..- ....|-. ....+....... .+.|... ..+.. +
T Consensus 419 ~~tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 419 KDTTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred ccchhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 220 1111100 000010000000 1222221 00000 0
Q ss_pred ----hHHHHHHHHHH--hcCCceEEEEecccccHHHHHHHHHhCCC---------c-eeee-------------cCCCCH
Q 004900 244 ----DAYADLCSVLK--ANGDTCAIVYCLERTTCDELSAYLSAGGI---------S-CAAY-------------HAGLND 294 (724)
Q Consensus 244 ----~k~~~L~~lLk--~~~~~~~IIf~~sr~~~e~La~~L~~~gi---------~-v~~~-------------H~~l~~ 294 (724)
.....+...+. ...+.++.+.|.++..+..+++....... . +..| |.....
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 578 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAKLKD 578 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHHHHH
Confidence 00011111111 12345677778888755555544332100 0 0001 111111
Q ss_pred HHHHHHHHHh--hcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCC
Q 004900 295 KARSSVLDDW--ISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRD 352 (724)
Q Consensus 295 ~eR~~vl~~F--~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRd 352 (724)
.+.....+| .....++||.++.+-.|.|-|.+.. +-.|-|----..+|.+-|+.|.
T Consensus 579 -~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~T-mYvDK~Lk~H~L~QAisRtNR~ 636 (962)
T COG0610 579 -EKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNT-LYVDKPLKYHNLIQAISRTNRV 636 (962)
T ss_pred -HHhhhhhhhcCcCCCCCEEEEEccccccCCccccce-EEeccccccchHHHHHHHhccC
Confidence 222333343 3567899999999999999996654 5566677778899999999994
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.57 E-value=1.9e-08 Score=95.18 Aligned_cols=133 Identities=18% Similarity=0.125 Sum_probs=70.9
Q ss_pred cCCcEEEEcCCCchHHHHHHH----HHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcC
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI----PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l----pal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~ 127 (724)
+|+-.++-+.+|+|||--.+- -.+.+..++|||.|||.++....+.|+...+. +-. ..-... ..+
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~--~~t-~~~~~~--------~~g 71 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVR--FHT-NARMRT--------HFG 71 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEE--EES-TTSS------------S
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcc--cCc-eeeecc--------ccC
Confidence 455568889999999974322 24568999999999999999999998765432 221 111110 001
Q ss_pred CCCccEEEeCcccccChhH-HHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChh
Q 004900 128 KPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (724)
Q Consensus 128 ~~~~~il~~TPE~i~T~~~-l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~ 206 (724)
. ++..+.+.+. ...+..-.....+++||+||||....+..-+|... ..+ .......+|++|||++-.
T Consensus 72 ~--------~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l---~~~-~~~g~~~~i~mTATPPG~ 139 (148)
T PF07652_consen 72 S--------SIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYL---REL-AESGEAKVIFMTATPPGS 139 (148)
T ss_dssp S--------SSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHH---HHH-HHTTS-EEEEEESS-TT-
T ss_pred C--------CcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeH---HHh-hhccCeeEEEEeCCCCCC
Confidence 1 1223333332 23334444456799999999998655432222211 111 222346799999998865
Q ss_pred h
Q 004900 207 V 207 (724)
Q Consensus 207 v 207 (724)
.
T Consensus 140 ~ 140 (148)
T PF07652_consen 140 E 140 (148)
T ss_dssp -
T ss_pred C
Confidence 3
No 166
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.56 E-value=6.5e-07 Score=94.07 Aligned_cols=135 Identities=21% Similarity=0.225 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++.+|+. +++.|.-++-.+..|+ |+.+.||-|||++..+|+.. .+..|=||+...-|+..-.+.+..
T Consensus 66 ~rea~~r~~g~~-p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 66 VREAARRTLGLR-PYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp HHHHHHHHTS-----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCc-ccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHH
Confidence 344566677875 7889999888887776 99999999999999888864 577889999999999876666544
Q ss_pred --cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh---hhhcCCccEEEEccccccc
Q 004900 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 101 --~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~---~~~~~~l~lIVIDEAH~l~ 171 (724)
+|+.+...........+...+. .+|.|+|..-+.-......+.. ......+.++||||+|.++
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y~--------~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAYA--------ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHHH--------SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HHhhhccccCccccCHHHHHHHHh--------CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 7999999988888777666664 6799999886654333333311 1123568999999999875
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.18 E-value=8.6e-06 Score=87.22 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=57.4
Q ss_pred HcCCCCCCHHHHHHHH----HHHcCCcEEEEcCCCchHHHHHHHHHHc----CCC-----eEEEEcCcHHHHHHHHHHHH
Q 004900 33 HFGHAQFRDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLK 99 (724)
Q Consensus 33 ~fG~~~lr~~Q~eaI~----ail~g~dvlv~apTGsGKTl~~~lpal~----~~~-----~vLVlsPl~aL~~qqv~~l~ 99 (724)
.|.|. +||.|.+.+. .+.+|.++++.||||+|||++|++|++. ... .++|.++|.+++.+....++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 37777 5999999554 4557889999999999999999999873 233 79999999999888888888
Q ss_pred HcCCc
Q 004900 100 EKGIA 104 (724)
Q Consensus 100 ~~gi~ 104 (724)
+....
T Consensus 83 ~~~~~ 87 (289)
T smart00489 83 KLMQK 87 (289)
T ss_pred hcccc
Confidence 76433
No 168
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.18 E-value=8.6e-06 Score=87.22 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=57.4
Q ss_pred HcCCCCCCHHHHHHHH----HHHcCCcEEEEcCCCchHHHHHHHHHHc----CCC-----eEEEEcCcHHHHHHHHHHHH
Q 004900 33 HFGHAQFRDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPG-----IVLVVSPLIALMENQVIGLK 99 (724)
Q Consensus 33 ~fG~~~lr~~Q~eaI~----ail~g~dvlv~apTGsGKTl~~~lpal~----~~~-----~vLVlsPl~aL~~qqv~~l~ 99 (724)
.|.|. +||.|.+.+. .+.+|.++++.||||+|||++|++|++. ... .++|.++|.+++.+....++
T Consensus 4 ~FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 4 YFPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred cCCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 37777 5999999554 4557889999999999999999999873 233 79999999999888888888
Q ss_pred HcCCc
Q 004900 100 EKGIA 104 (724)
Q Consensus 100 ~~gi~ 104 (724)
+....
T Consensus 83 ~~~~~ 87 (289)
T smart00488 83 KLMQK 87 (289)
T ss_pred hcccc
Confidence 76433
No 169
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.00012 Score=81.42 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=91.2
Q ss_pred eEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc--cccccCCCCcceEEeeCCCC
Q 004900 260 CAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA--FGMGIDRKDVRLVCHFNIPK 337 (724)
Q Consensus 260 ~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a--~g~GIDip~V~~VI~~d~P~ 337 (724)
-++||.++--+--++-.++++.++....+|--.+...-.+.-+-|..|...||+-|.- |-+--++.+|+.||.|.+|.
T Consensus 554 ~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~ 633 (698)
T KOG2340|consen 554 GILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPN 633 (698)
T ss_pred ceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCC
Confidence 4799999999999999999999888777776555555555567799999999999975 55678899999999999999
Q ss_pred CHHHH---HHHHcccCCC----CCCCeEEEEEccccHHHHHHHHH
Q 004900 338 SMEAF---YQESGRAGRD----QLPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 338 S~~~y---iQr~GRAGRd----G~~g~~il~~~~~D~~~~~~i~~ 375 (724)
.+.-| +-+++|+.-. +....|.++|++-|...++.++-
T Consensus 634 ~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le~ivG 678 (698)
T KOG2340|consen 634 NPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLENIVG 678 (698)
T ss_pred CcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHHHHhhh
Confidence 88655 4556665433 33467899999988888777653
No 170
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.92 E-value=2.8e-05 Score=76.41 Aligned_cols=112 Identities=16% Similarity=0.223 Sum_probs=75.9
Q ss_pred HHHHHhcCCceEEEEecccccHHHHHHHHHhCCC--ceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc--ccccccCCC
Q 004900 250 CSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI--SCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRK 325 (724)
Q Consensus 250 ~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi--~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~--a~g~GIDip 325 (724)
.++++..+ +.+|||++|.+..+.+...+...+. ....+.- +..++..+++.|.+++-.||+|+. .+..|||+|
T Consensus 2 ~~l~~~~~-g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~ 78 (167)
T PF13307_consen 2 LELISAVP-GGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFP 78 (167)
T ss_dssp HHHHHCCS-SEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--E
T ss_pred hHHHhcCC-CCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCC
Confidence 34455444 6799999999999999999987542 1122332 355778889999999999999999 999999999
Q ss_pred C--cceEEeeCCCC----CH--------------------------HHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 326 D--VRLVCHFNIPK----SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 326 ~--V~~VI~~d~P~----S~--------------------------~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
+ ++.||..++|- ++ ....|.+||+-|....--++++++.
T Consensus 79 ~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 79 GDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp CESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred CchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 6 88999999883 11 2346889999998765444555543
No 171
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.89 E-value=0.00022 Score=86.21 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=41.4
Q ss_pred CceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCC
Q 004900 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351 (724)
Q Consensus 308 ~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGR 351 (724)
..+.|++-+++..|-|-|+|=.++-+.-..|...-.|.+||.-|
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr 544 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLR 544 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhcccee
Confidence 57899999999999999999999999988999999999999988
No 172
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=97.87 E-value=0.0004 Score=83.61 Aligned_cols=79 Identities=15% Similarity=0.055 Sum_probs=50.4
Q ss_pred ccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHH-HHhhCCCCCEEEEeecCChhh--
Q 004900 131 LRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSS-LRNYLPDVPILALTATAAPKV-- 207 (724)
Q Consensus 131 ~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~-l~~~~p~~pil~LSAT~~~~v-- 207 (724)
-.|+++||.++.... |....+...+..|||||||++..-. .|.-+.+ .+...+..-+.||||.+...+
T Consensus 8 ggi~~~T~rIl~~Dl----L~~ri~~~~itgiiv~~Ahr~~~~~-----~eaFI~rlyr~~n~~gfIkafSdsP~~~~~g 78 (814)
T TIGR00596 8 GGIFSITSRILVVDL----LTGIIPPELITGILVLRADRIIESS-----QEAFILRLYRQKNKTGFIKAFSDNPEAFTMG 78 (814)
T ss_pred CCEEEEechhhHhHH----hcCCCCHHHccEEEEeecccccccc-----cHHHHHHHHHHhCCCcceEEecCCCcccccc
Confidence 358888888776532 3445556668999999999986421 1233333 444445556889999987632
Q ss_pred ---HHHHHHhhccC
Q 004900 208 ---QKDVMESLCLQ 218 (724)
Q Consensus 208 ---~~di~~~l~l~ 218 (724)
...+++.|++.
T Consensus 79 ~~~l~~vmk~L~i~ 92 (814)
T TIGR00596 79 FSPLETKMRNLFLR 92 (814)
T ss_pred hHHHHHHHHHhCcC
Confidence 45556666554
No 173
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.72 E-value=0.00039 Score=73.81 Aligned_cols=164 Identities=16% Similarity=0.118 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHH--------c--CCcEEEEcCCCchHHHHH--H-HHHHcCCC-eEEEEcCcHHHHHHHHHHHHHcCC
Q 004900 38 QFRDKQLDAIQAVL--------S--GRDCFCLMPTGGGKSMCY--Q-IPALAKPG-IVLVVSPLIALMENQVIGLKEKGI 103 (724)
Q Consensus 38 ~lr~~Q~eaI~ail--------~--g~dvlv~apTGsGKTl~~--~-lpal~~~~-~vLVlsPl~aL~~qqv~~l~~~gi 103 (724)
.+...|.|++--+. . +.-.++--.||.||--.. + +-...++. ++|+|+.+..|..|-.+.|+..|.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~ 116 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGA 116 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCC
Confidence 46789999875543 1 223555569999998532 2 22234544 699999999999999999999876
Q ss_pred ceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccCh--------hHHHHHHhhhhcCCccEEEEccccccccCCC
Q 004900 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP--------GFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (724)
Q Consensus 104 ~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~--------~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~ 175 (724)
....++........ . ...-.-.|+++|.-.+... .++..+...+....=.+||+||||.......
T Consensus 117 ~~i~v~~l~~~~~~-----~--~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~ 189 (303)
T PF13872_consen 117 DNIPVHPLNKFKYG-----D--IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSS 189 (303)
T ss_pred CcccceechhhccC-----c--CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCc
Confidence 54433322221110 0 0111345788887755433 2444454444333345899999999876421
Q ss_pred C---ChHHHHHHHHHHhhCCCCCEEEEeecCChhhH
Q 004900 176 D---FRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (724)
Q Consensus 176 d---Frp~y~~L~~l~~~~p~~pil~LSAT~~~~v~ 208 (724)
. -...=..+..+.+.+|+.+++.+|||...+..
T Consensus 190 ~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 190 GSKKPSKTGIAVLELQNRLPNARVVYASATGASEPR 225 (303)
T ss_pred cCccccHHHHHHHHHHHhCCCCcEEEecccccCCCc
Confidence 0 00111234567888999999999999876654
No 174
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.65 E-value=9.2e-06 Score=96.15 Aligned_cols=125 Identities=20% Similarity=0.217 Sum_probs=81.5
Q ss_pred CCCHHHHHHHHHHHc-CCcEEEEcCCCchHHHHHHHHHHc-----CCCeEEEEcCcHHHHHHHHHHHHH----cCCceee
Q 004900 38 QFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKE----KGIAGEF 107 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~-g~dvlv~apTGsGKTl~~~lpal~-----~~~~vLVlsPl~aL~~qqv~~l~~----~gi~~~~ 107 (724)
.+.|.|.+.+..... ..++++.+|||+|||++|.+.... -..++++|+|..+|+..-++.+.. -|++..-
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie 1006 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIE 1006 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEe
Confidence 455677666554432 356788999999999999876653 257899999999998876666554 2555655
Q ss_pred ecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccC
Q 004900 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (724)
Q Consensus 108 l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~ 173 (724)
+.+........ ..+..++++|||....-.+-+.-.+ -...+.++|+||.||+.+.
T Consensus 1007 ~tgd~~pd~~~---------v~~~~~~ittpek~dgi~Rsw~~r~--~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1007 LTGDVTPDVKA---------VREADIVITTPEKWDGISRSWQTRK--YVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred ccCccCCChhh---------eecCceEEcccccccCccccccchh--hhccccceeecccccccCC
Confidence 55554443211 1246789999997643222111111 1123788999999999763
No 175
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.51 E-value=0.0011 Score=77.67 Aligned_cols=106 Identities=19% Similarity=0.179 Sum_probs=84.0
Q ss_pred CceEEEEecccccHHHHHHHHHhC-------CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceE
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG-------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~-------gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~V 330 (724)
.+.++||..--...-.|..+|... -+.....|+-+...+..++.+....|..++|+.|.....-|-+.++.+|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 345788887777777777776543 2456788999988888888888889999999999999999999898888
Q ss_pred EeeCCC------------------CCHHHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 331 CHFNIP------------------KSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 331 I~~d~P------------------~S~~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
|..+.- .|.....|+.||+||. ++|.|..+++.
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~ 773 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSR 773 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHH
Confidence 865533 2567789999999998 57888877653
No 176
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.47 E-value=0.025 Score=65.80 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=93.0
Q ss_pred ceEEEEecccccHHHHHHHHHhCCCce------------------eeecCCCCHHHHHHHHHHhhc--CCc-eEEEEccc
Q 004900 259 TCAIVYCLERTTCDELSAYLSAGGISC------------------AAYHAGLNDKARSSVLDDWIS--SRK-QVVVATVA 317 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~gi~v------------------~~~H~~l~~~eR~~vl~~F~~--g~~-~VLVAT~a 317 (724)
.++|||..+....+.+.+.|.+.-++| .-+.|-.+..+|+..+++|.+ |-. -++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 467888888888888888887643322 345677788899999999985 323 47888999
Q ss_pred cccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHH
Q 004900 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (724)
Q Consensus 318 ~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~ 374 (724)
...|||+-....+|.||.-+++.--.|.+-|+-|.|+...|++|--..|...-+.|.
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~lEkkIy 856 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSLEKKIY 856 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhhHHHHH
Confidence 999999988889999999999999999999999999999999997766655444443
No 177
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.27 E-value=0.0016 Score=65.66 Aligned_cols=56 Identities=23% Similarity=0.317 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHcCC--cEEEEcCCCchHHHHHHH--HHH-cCCCeEEEEcCcHHHHHH
Q 004900 38 QFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMEN 93 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~--dvlv~apTGsGKTl~~~l--pal-~~~~~vLVlsPl~aL~~q 93 (724)
+|++.|.+++..++... -+++.+|.|+|||.+... -++ ..+..+++++||...+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~ 61 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKE 61 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHH
Confidence 37899999999997554 366789999999975322 122 346789999999777655
No 178
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.19 E-value=0.00095 Score=67.73 Aligned_cols=63 Identities=33% Similarity=0.432 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHcCCc-EEEEcCCCchHHH--HHHHHHH---------cCCCeEEEEcCcHHHHHHHHHHHHH
Q 004900 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSM--CYQIPAL---------AKPGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~d-vlv~apTGsGKTl--~~~lpal---------~~~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
++.+.|.+|+..++.... .+|.+|.|+|||. +.++..+ ..+..+||++|+..-+.+.++.+..
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 9999999999994 3344444 3467899999999999988888876
No 179
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.17 E-value=0.0024 Score=73.12 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=64.3
Q ss_pred HcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHH----HcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeee
Q 004900 33 HFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (724)
Q Consensus 33 ~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpa----l~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l 108 (724)
.+|+.+++.-|..|+.+++...=.|+++|+|+|||.+..-.. -...+.+||++|+.--+.|..+.+.+.|+++.-+
T Consensus 405 ~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKVvRl 484 (935)
T KOG1802|consen 405 VPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKVVRL 484 (935)
T ss_pred CCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceEeee
Confidence 368889999999999999999889999999999997532111 1357899999999888888889999988887665
Q ss_pred cc
Q 004900 109 SS 110 (724)
Q Consensus 109 ~s 110 (724)
.+
T Consensus 485 ~a 486 (935)
T KOG1802|consen 485 CA 486 (935)
T ss_pred eh
Confidence 43
No 180
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.96 E-value=0.0013 Score=74.73 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=50.8
Q ss_pred CCCCHHHHHHHHHHHcCCc-EEEEcCCCchHHHHHHH---HHHcCCCeEEEEcCcHHHHHHHHHHHH
Q 004900 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLK 99 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~d-vlv~apTGsGKTl~~~l---pal~~~~~vLVlsPl~aL~~qqv~~l~ 99 (724)
..+.+-|..|+....+.++ .++.+|+|+|||.+-.. -++.++.++||..|+..-+...++++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 4677899999999998866 46799999999965432 234578999999999999888888754
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.95 E-value=0.0027 Score=64.49 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---C--CCeEEEEcCcHHH
Q 004900 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIAL 90 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~--~~~vLVlsPl~aL 90 (724)
...+..|..++.++++..-+++.+|.|+|||+..+..++. . -.+++++-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 4567899999999998788899999999999987766653 2 2467777788754
No 182
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.91 E-value=0.011 Score=60.89 Aligned_cols=62 Identities=27% Similarity=0.432 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHHHHc---CCcEEEEcCCCchHHHHHHHHHH----cCC-CeEEEEcCcHHHHHHHHHHHHH
Q 004900 37 AQFRDKQLDAIQAVLS---GRDCFCLMPTGGGKSMCYQIPAL----AKP-GIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~---g~dvlv~apTGsGKTl~~~lpal----~~~-~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
--+|+.|.++...+.+ |.+.+.++-+|.|||.+ ++|++ ..+ ..+.+++|. +|..|....|..
T Consensus 22 iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~LvrviVpk-~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSRLVRVIVPK-ALLEQMRQMLRS 91 (229)
T ss_pred ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCcEEEEEcCH-HHHHHHHHHHHH
Confidence 3589999999999885 57899999999999987 34443 233 456666665 788887777766
No 183
>PRK10536 hypothetical protein; Provisional
Probab=96.84 E-value=0.012 Score=61.56 Aligned_cols=57 Identities=18% Similarity=0.158 Sum_probs=41.3
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHH---cCC--CeEEEEcCcHHH
Q 004900 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKP--GIVLVVSPLIAL 90 (724)
Q Consensus 34 fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal---~~~--~~vLVlsPl~aL 90 (724)
+++...+..|...+.++..+.-+++.+|+|+|||+.....++ ..+ .+++|.-|....
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA 116 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc
Confidence 355667789999999998888888999999999987655443 222 235555577654
No 184
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.82 E-value=0.0062 Score=72.58 Aligned_cols=127 Identities=26% Similarity=0.239 Sum_probs=85.9
Q ss_pred CCCHHHHHHHHHHHcCCc-EEEEcCCCchHHHH--HHHHHH-cCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccch
Q 004900 38 QFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMC--YQIPAL-AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQT 113 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~d-vlv~apTGsGKTl~--~~lpal-~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~ 113 (724)
.++.-|++|+..++..+| .++.+-+|+|||.+ .++-+| ..++++|..+=|.+-+....-.|+.+++...-+.+...
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~~k 748 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSEEK 748 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCccc
Confidence 578899999999988776 57889999999964 334333 46889999999999888888999998887655444332
Q ss_pred HHHHHH-----------HHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 114 MQVKTK-----------IYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 114 ~~~~~~-----------i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
.....+ -+.++..--....|+.+|.--+..|-|. .+.++++|||||-.++.
T Consensus 749 ih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~--------~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 749 IHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFV--------NRQFDYCIIDEASQILL 810 (1100)
T ss_pred cchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhh--------ccccCEEEEcccccccc
Confidence 211111 1112222223355666665555555442 34499999999998875
No 185
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.76 E-value=0.0093 Score=57.06 Aligned_cols=78 Identities=22% Similarity=0.283 Sum_probs=54.9
Q ss_pred eeecCCCCHHHHHHHHHHhhcCC-ceEEEEccccccccCCCC--cceEEeeCCCC----C--------------------
Q 004900 286 AAYHAGLNDKARSSVLDDWISSR-KQVVVATVAFGMGIDRKD--VRLVCHFNIPK----S-------------------- 338 (724)
Q Consensus 286 ~~~H~~l~~~eR~~vl~~F~~g~-~~VLVAT~a~g~GIDip~--V~~VI~~d~P~----S-------------------- 338 (724)
..+.-+.+..+...+++.|.+.. ..||++|..+.+|||+|+ ++.||..++|. +
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 34444455556788899998654 379999988999999997 57899888773 1
Q ss_pred -------HHHHHHHHcccCCCCCCCeEEEEEc
Q 004900 339 -------MEAFYQESGRAGRDQLPSKSLLYYG 363 (724)
Q Consensus 339 -------~~~yiQr~GRAGRdG~~g~~il~~~ 363 (724)
+....|.+||+-|....--++++++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCceEEEEEEe
Confidence 2344678888888765443444443
No 186
>PF13245 AAA_19: Part of AAA domain
Probab=96.73 E-value=0.0041 Score=52.99 Aligned_cols=53 Identities=26% Similarity=0.305 Sum_probs=36.0
Q ss_pred HHHHHHcCCc-EEEEcCCCchHHHHHH-H-HHHc-C----CCeEEEEcCcHHHHHHHHHHH
Q 004900 46 AIQAVLSGRD-CFCLMPTGGGKSMCYQ-I-PALA-K----PGIVLVVSPLIALMENQVIGL 98 (724)
Q Consensus 46 aI~ail~g~d-vlv~apTGsGKTl~~~-l-pal~-~----~~~vLVlsPl~aL~~qqv~~l 98 (724)
+|...+.+.. ++|.+|.|+|||.... + ..+. . +..++|++|++..+.+..+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 4553334444 4559999999994432 2 1222 2 678999999999998877776
No 187
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.59 E-value=0.02 Score=68.93 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=46.7
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHH--HHHHHcC-C--CeEEEEcCcHHHHH
Q 004900 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-P--GIVLVVSPLIALME 92 (724)
Q Consensus 29 ~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~--~lpal~~-~--~~vLVlsPl~aL~~ 92 (724)
.+...+|+ .+.+.|++|+..+..++-+++.++.|+|||.+. ++-++.. + ..+++++||-.-+.
T Consensus 315 ~~~~~~~~-~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~ 382 (720)
T TIGR01448 315 EVEKKLRK-GLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAK 382 (720)
T ss_pred HHHHhcCC-CCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHH
Confidence 34444565 589999999999998888999999999999743 2333333 3 46778889966654
No 188
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.56 E-value=0.012 Score=56.47 Aligned_cols=93 Identities=24% Similarity=0.341 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCC---ceeeecCCCCHHHHHHHHHHhhcCCc---eEEEEccc--cccccCCCC--cceEEeeCCCC---
Q 004900 271 CDELSAYLSAGGI---SCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVA--FGMGIDRKD--VRLVCHFNIPK--- 337 (724)
Q Consensus 271 ~e~La~~L~~~gi---~v~~~H~~l~~~eR~~vl~~F~~g~~---~VLVAT~a--~g~GIDip~--V~~VI~~d~P~--- 337 (724)
.+.+++.+.+.+. ....+.-+....+...+++.|.+..- .||+++.- +.+|||+|+ ++.||..++|-
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~ 83 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNP 83 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCC
Confidence 3445555554432 12223322233344677888886433 68888877 999999997 68899988873
Q ss_pred -C---------------------------HHHHHHHHcccCCCCCCCeEEEEEc
Q 004900 338 -S---------------------------MEAFYQESGRAGRDQLPSKSLLYYG 363 (724)
Q Consensus 338 -S---------------------------~~~yiQr~GRAGRdG~~g~~il~~~ 363 (724)
+ +....|.+||+-|....--++++++
T Consensus 84 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 84 DSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCccceEEEEEEe
Confidence 1 1244788899999875444555554
No 189
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.55 E-value=0.01 Score=65.41 Aligned_cols=45 Identities=18% Similarity=0.060 Sum_probs=33.6
Q ss_pred EEEEcCCCchHHHHHHH-HH-H---cCCCeEEEEcCcHHHHHHHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQI-PA-L---AKPGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 56 vlv~apTGsGKTl~~~l-pa-l---~~~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
++|.+..|+|||++.+- .. + ..+..++++++...|+......+..
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~ 53 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAK 53 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhh
Confidence 67899999999986542 22 2 2467899999999998766666654
No 190
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.43 E-value=0.011 Score=54.71 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=12.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (724)
++-+++.+|+|+|||.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4568999999999998643
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.41 E-value=0.04 Score=64.99 Aligned_cols=75 Identities=21% Similarity=0.116 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCCC-CCHHHHHHHHHHHcCCcEEEEcCCCchHHHHH--HHHHHcC-----CCeEEEEcCcHHHHHHHH
Q 004900 24 EALVKLLRWHFGHAQ-FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK-----PGIVLVVSPLIALMENQV 95 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~-lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~--~lpal~~-----~~~vLVlsPl~aL~~qqv 95 (724)
..+...|...|+... ..++|++|+...+.++-+++.+++|+|||.+. ++..+.. ...++++.||.--+....
T Consensus 137 ~~~~~~l~~lf~~~~~~~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~ 216 (615)
T PRK10875 137 ALLRQTLDALFGPVTDEVDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT 216 (615)
T ss_pred HHHHHHHHHhcCcCCCCCHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHH
Confidence 567777888787642 35899999999999999999999999999753 3333322 236778899976665544
Q ss_pred HHH
Q 004900 96 IGL 98 (724)
Q Consensus 96 ~~l 98 (724)
+.+
T Consensus 217 e~~ 219 (615)
T PRK10875 217 ESL 219 (615)
T ss_pred HHH
Confidence 443
No 192
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.08 Score=59.05 Aligned_cols=124 Identities=19% Similarity=0.181 Sum_probs=69.9
Q ss_pred CcEEEEcCCCchHHHHHHH-HHHc------CCCeEEEEc--CcHHHHHHHHHHHHH-cCCceeeecccchHHHHHHHHhh
Q 004900 54 RDCFCLMPTGGGKSMCYQI-PALA------KPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYED 123 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l-pal~------~~~~vLVls--Pl~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~~~~i~~~ 123 (724)
+.+++++|||+|||.+..- .+.. .+..+.+++ +.+.-+.+|...+.. +|++......
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~------------- 241 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIES------------- 241 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCc-------------
Confidence 4578899999999976542 2221 234455544 556666666655544 5554322110
Q ss_pred hhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCC-C-CCEEEEee
Q 004900 124 LDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-D-VPILALTA 201 (724)
Q Consensus 124 l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~-~pil~LSA 201 (724)
+ ......+.. ....++|+||++.+... + ......+..+..... . -.++.|+|
T Consensus 242 --------------~-----~~l~~~L~~---~~~~DlVLIDTaGr~~~---~-~~~l~el~~~l~~~~~~~e~~LVlsa 295 (388)
T PRK12723 242 --------------F-----KDLKEEITQ---SKDFDLVLVDTIGKSPK---D-FMKLAEMKELLNACGRDAEFHLAVSS 295 (388)
T ss_pred --------------H-----HHHHHHHHH---hCCCCEEEEcCCCCCcc---C-HHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 0 011111111 23479999999997642 1 112334444444332 2 35799999
Q ss_pred cCChhhHHHHHHhhc
Q 004900 202 TAAPKVQKDVMESLC 216 (724)
Q Consensus 202 T~~~~v~~di~~~l~ 216 (724)
|.......++...+.
T Consensus 296 t~~~~~~~~~~~~~~ 310 (388)
T PRK12723 296 TTKTSDVKEIFHQFS 310 (388)
T ss_pred CCCHHHHHHHHHHhc
Confidence 999888777766653
No 193
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=96.16 E-value=0.0026 Score=74.64 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=54.8
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhc---CCceEEEEccccccc
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS---SRKQVVVATVAFGMG 321 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~---g~~~VLVAT~a~g~G 321 (724)
.+.+++||..-.+..+-+..++...+ ....+.|..+-.+|.....+|.. ...-.|.+|.+.|.|
T Consensus 630 ~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 630 SGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred cchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 46789999998888888888888888 78889999999999999999983 456688999998876
No 194
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.01 E-value=0.054 Score=63.66 Aligned_cols=70 Identities=19% Similarity=0.091 Sum_probs=47.4
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHH--HHHHHcC------CCeEEEEcCcHHHHHHHHHHH
Q 004900 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALAK------PGIVLVVSPLIALMENQVIGL 98 (724)
Q Consensus 29 ~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~--~lpal~~------~~~vLVlsPl~aL~~qqv~~l 98 (724)
.+.+.|....-.++|+.|+..++.++-+++.++.|+|||.+. ++..+.. ...+++.+||---+....+.+
T Consensus 136 ~l~~~~~~~~~~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~ 213 (586)
T TIGR01447 136 ILENLFPLLNEQNWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESL 213 (586)
T ss_pred HHHHhhccccccHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHH
Confidence 344444332224799999999999999999999999999753 3333321 146888999966555444433
No 195
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.89 E-value=0.093 Score=53.05 Aligned_cols=127 Identities=20% Similarity=0.119 Sum_probs=66.7
Q ss_pred EEEEcCCCchHHHHHHH-HHH--cCCCeEEEEc--CcHHHHHHHHHHHHH-cCCceeeecccchHHHHHHHHhhhhcCCC
Q 004900 56 CFCLMPTGGGKSMCYQI-PAL--AKPGIVLVVS--PLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (724)
Q Consensus 56 vlv~apTGsGKTl~~~l-pal--~~~~~vLVls--Pl~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~~~~i~~~l~~~~~ 129 (724)
+++++|||+|||.+..- .+. .++.++.+++ ..|.=+.+|...+.+ +|++...........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~-------------- 69 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA-------------- 69 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH--------------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH--------------
Confidence 57899999999976432 221 2355555554 445556666665544 455443221111000
Q ss_pred CccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhH
Q 004900 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQ 208 (724)
Q Consensus 130 ~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~ 208 (724)
...............++|+||-+.+... -......+..+.... |.-.++.++||......
T Consensus 70 ---------------~~~~~~l~~~~~~~~D~vlIDT~Gr~~~----d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~ 130 (196)
T PF00448_consen 70 ---------------EIAREALEKFRKKGYDLVLIDTAGRSPR----DEELLEELKKLLEALNPDEVHLVLSATMGQEDL 130 (196)
T ss_dssp ---------------HHHHHHHHHHHHTTSSEEEEEE-SSSST----HHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH
T ss_pred ---------------HHHHHHHHHHhhcCCCEEEEecCCcchh----hHHHHHHHHHHhhhcCCccceEEEecccChHHH
Confidence 0111111112233478999999875432 122334455554443 45568899999988877
Q ss_pred HHHHHhh
Q 004900 209 KDVMESL 215 (724)
Q Consensus 209 ~di~~~l 215 (724)
..+....
T Consensus 131 ~~~~~~~ 137 (196)
T PF00448_consen 131 EQALAFY 137 (196)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6555544
No 196
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.86 E-value=0.07 Score=49.09 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (724)
++.+++.+|+|+|||....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5789999999999997543
No 197
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.79 E-value=0.036 Score=65.81 Aligned_cols=72 Identities=22% Similarity=0.167 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHcC-CcEEEEcCCCchHHHHHH--HH-HHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeee
Q 004900 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--IP-ALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g-~dvlv~apTGsGKTl~~~--lp-al~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l 108 (724)
..+.+.|.+|+..++.. ..+++.+|+|+|||.+.. +- ++..+.++||++|+..-+.+..+.+...++++.-+
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~vvRl 231 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQKIVRL 231 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCcEEEe
Confidence 45789999999999877 567899999999995432 22 23467799999999999888888888765554443
No 198
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.55 E-value=0.034 Score=60.32 Aligned_cols=63 Identities=17% Similarity=0.124 Sum_probs=48.0
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHcCC--cEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCcHHHHH
Q 004900 30 LRWHFGHAQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLIALME 92 (724)
Q Consensus 30 L~~~fG~~~lr~~Q~eaI~ail~g~--dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl~aL~~ 92 (724)
-++.||+....-.|.-|+..++... =|.+.++-|+|||+.++..++.+ -.++||.=|+..+-+
T Consensus 220 ~~~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~ 290 (436)
T COG1875 220 DQEVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE 290 (436)
T ss_pred chhhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc
Confidence 3478999988889999999988653 35678899999999877766642 356777778876643
No 199
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.50 E-value=0.044 Score=60.73 Aligned_cols=54 Identities=26% Similarity=0.338 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHH------HcCCcEEEEcCCCchHHHHHHH--HHHc-CCCeEEEEcCcHHHH
Q 004900 38 QFRDKQLDAIQAV------LSGRDCFCLMPTGGGKSMCYQI--PALA-KPGIVLVVSPLIALM 91 (724)
Q Consensus 38 ~lr~~Q~eaI~ai------l~g~dvlv~apTGsGKTl~~~l--pal~-~~~~vLVlsPl~aL~ 91 (724)
+|++-|+.++..+ ..+..+++.+|-|+|||..+-. -.+. .+..+++++||-.-+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA 63 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAA 63 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHH
Confidence 3678899998887 5678899999999999986532 1222 356788889995443
No 200
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.45 E-value=0.035 Score=50.48 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=25.7
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHcC-CC--eEEEEcCcHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPALAK-PG--IVLVVSPLIAL 90 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpal~~-~~--~vLVlsPl~aL 90 (724)
+..+++.+|+|+|||.....-+..- .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 4678999999999998765444332 22 47777766443
No 201
>PRK08181 transposase; Validated
Probab=95.43 E-value=0.11 Score=55.26 Aligned_cols=54 Identities=26% Similarity=0.332 Sum_probs=31.9
Q ss_pred CHHHHHHHH----HHHcCCcEEEEcCCCchHHHHHHHH--HHcCCCeEEEEcCcHHHHHH
Q 004900 40 RDKQLDAIQ----AVLSGRDCFCLMPTGGGKSMCYQIP--ALAKPGIVLVVSPLIALMEN 93 (724)
Q Consensus 40 r~~Q~eaI~----ail~g~dvlv~apTGsGKTl~~~lp--al~~~~~vLVlsPl~aL~~q 93 (724)
...|..++. .+-.++++++.+|+|+|||...... .+...+..++..+...|+.+
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 355655553 2346789999999999999543322 22333444444455566554
No 202
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.31 E-value=0.045 Score=58.08 Aligned_cols=59 Identities=22% Similarity=0.272 Sum_probs=50.7
Q ss_pred HHHHHhhcCCceEEEEccccccccCCCC--------cceEEeeCCCCCHHHHHHHHcccCCCCCCCe
Q 004900 299 SVLDDWISSRKQVVVATVAFGMGIDRKD--------VRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (724)
Q Consensus 299 ~vl~~F~~g~~~VLVAT~a~g~GIDip~--------V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~ 357 (724)
...+.|++|+.+|+|.+.+.+.||-+.. -|+-|...+|+|....+|..||+.|.|+...
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~ 118 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSA 118 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccC
Confidence 3456899999999999999999998753 3567788899999999999999999998543
No 203
>PRK08727 hypothetical protein; Validated
Probab=95.26 E-value=0.1 Score=54.20 Aligned_cols=17 Identities=24% Similarity=0.217 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (724)
..+++.+|+|+|||...
T Consensus 42 ~~l~l~G~~G~GKThL~ 58 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLA 58 (233)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35899999999999543
No 204
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.23 E-value=0.038 Score=58.85 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHH---HHHcC----CCeEEEEcCcHHHHHHHHHHHHH
Q 004900 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALAK----PGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 39 lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~l---pal~~----~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
+++.|.++|.. ....++|.|+.|+|||.+.+- -.+.. +..+|+|++|+..+.+...++..
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 56889999988 667899999999999986542 22222 46799999999999888877776
No 205
>PRK14974 cell division protein FtsY; Provisional
Probab=95.15 E-value=0.64 Score=50.97 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=32.0
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHh-hCCCCCEEEEeecCChhhHHHHH
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YLPDVPILALTATAAPKVQKDVM 212 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~-~~p~~pil~LSAT~~~~v~~di~ 212 (724)
..++|+||.|.++.. -...+..|..+.. ..|+.-++.++||........+.
T Consensus 222 ~~DvVLIDTaGr~~~----~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~ 273 (336)
T PRK14974 222 GIDVVLIDTAGRMHT----DANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAR 273 (336)
T ss_pred CCCEEEEECCCccCC----cHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHH
Confidence 468999999998753 1222334444433 23666688899988766554443
No 206
>PRK04296 thymidine kinase; Provisional
Probab=95.05 E-value=0.058 Score=54.14 Aligned_cols=33 Identities=27% Similarity=0.127 Sum_probs=22.1
Q ss_pred cEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCc
Q 004900 55 DCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl 87 (724)
=.++.+|+|+|||...+--+ ...+.+++|+-|.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~ 39 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA 39 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 36789999999996543222 2356677877663
No 207
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.02 E-value=0.081 Score=58.25 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=23.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCc
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPL 87 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl 87 (724)
.++|+.+|+|+|||..+.+.+-..+....-++.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv 82 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV 82 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc
Confidence 4799999999999998766554333333344433
No 208
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.00 E-value=0.027 Score=66.54 Aligned_cols=45 Identities=24% Similarity=0.298 Sum_probs=42.1
Q ss_pred CCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCC
Q 004900 307 SRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGR 351 (724)
Q Consensus 307 g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGR 351 (724)
.-.+.|++-.++-.|-|-|+|=.++-.....|..+=.|++||.-|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred CcceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 346899999999999999999999999999999999999999988
No 209
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.00 E-value=0.16 Score=57.33 Aligned_cols=69 Identities=17% Similarity=0.259 Sum_probs=45.9
Q ss_pred HHcCCCCCCHHHHHHHHHHH----cCCcEEEEcCCCchHHHHHHHHHH--c-----CCCeEEEEcCcHHHHHHHHHHHHH
Q 004900 32 WHFGHAQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL--A-----KPGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 32 ~~fG~~~lr~~Q~eaI~ail----~g~dvlv~apTGsGKTl~~~lpal--~-----~~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
-+|.|+...|.|.+-+-.+. .+..+++.||+|+|||.+.+-.++ + ...+.|+.+-|..=++-.+.+|+.
T Consensus 10 v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 10 VYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred EecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHH
Confidence 35888999999988665543 456899999999999976432222 1 234677777776555555555443
No 210
>PRK06526 transposase; Provisional
Probab=94.98 E-value=0.073 Score=56.03 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=17.7
Q ss_pred HHcCCcEEEEcCCCchHHHHHH
Q 004900 50 VLSGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 50 il~g~dvlv~apTGsGKTl~~~ 71 (724)
+-.+.++++++|+|+|||....
T Consensus 95 i~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 95 VTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred hhcCceEEEEeCCCCchHHHHH
Confidence 4456799999999999996543
No 211
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.96 E-value=0.36 Score=50.83 Aligned_cols=120 Identities=13% Similarity=0.108 Sum_probs=56.5
Q ss_pred HHcCCcEEEEcCCCchHHHHH-HHHH--HcC-CCeEEEEcCcHHHHHHHHHHHHHc--CCceeeec--ccchHHHHHHHH
Q 004900 50 VLSGRDCFCLMPTGGGKSMCY-QIPA--LAK-PGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS--STQTMQVKTKIY 121 (724)
Q Consensus 50 il~g~dvlv~apTGsGKTl~~-~lpa--l~~-~~~vLVlsPl~aL~~qqv~~l~~~--gi~~~~l~--s~~~~~~~~~i~ 121 (724)
+..|.-+++.+++|+|||... ++.. ... +..+++++--- -..+....+... ++...... ............
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE-PVVRTARRLLGQYAGKRLHLPDTVFIYTLEEFDAAF 105 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc-CHHHHHHHHHHHHhCCCcccCCccccccHHHHHHHH
Confidence 345667889999999999643 3322 223 66788887422 123333333322 33322111 111112222222
Q ss_pred hhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 122 EDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 122 ~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
..+.. .+.+ +++-.+..+.-......+........+++||||..+.+..
T Consensus 106 ~~~~~-~~~l-~i~d~~~~~~~~~i~~~i~~~~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 106 DEFEG-TGRL-FMYDSFGEYSMDSVLEKVRYMAVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHhcC-CCcE-EEEcCCCccCHHHHHHHHHHHHhcCCceEEEECCHHHHhc
Confidence 22221 1112 2222222222223344444444445689999999998864
No 212
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.91 E-value=0.32 Score=45.96 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=23.4
Q ss_pred EEEEcCCCchHHHHHHHH---HHcCCCeEEEEcCcHHH
Q 004900 56 CFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIAL 90 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lp---al~~~~~vLVlsPl~aL 90 (724)
+++.+|+|+|||...... +...++.++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 578999999999754322 22246777777765443
No 213
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=94.88 E-value=0.059 Score=64.08 Aligned_cols=76 Identities=26% Similarity=0.260 Sum_probs=52.8
Q ss_pred HcCCCCCCHHHHHHHHHHHc----CCcEEEEcCCCchHHHHHHHHHHc-----------------C--------------
Q 004900 33 HFGHAQFRDKQLDAIQAVLS----GRDCFCLMPTGGGKSMCYQIPALA-----------------K-------------- 77 (724)
Q Consensus 33 ~fG~~~lr~~Q~eaI~ail~----g~dvlv~apTGsGKTl~~~lpal~-----------------~-------------- 77 (724)
.|.|. +++.|...+..++. ..++++..|||+||||+.+-..+. +
T Consensus 17 ~fP~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~ 95 (945)
T KOG1132|consen 17 EFPFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGE 95 (945)
T ss_pred eccCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCC
Confidence 45554 78999988877764 468999999999999875533331 0
Q ss_pred --------------CCeEEEEcCcHHHHHHHHHHHHHcCC--ceeeec
Q 004900 78 --------------PGIVLVVSPLIALMENQVIGLKEKGI--AGEFLS 109 (724)
Q Consensus 78 --------------~~~vLVlsPl~aL~~qqv~~l~~~gi--~~~~l~ 109 (724)
-+.+++-+-|.+-+.|.++++++.+. +..++.
T Consensus 96 ~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLg 143 (945)
T KOG1132|consen 96 KSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLG 143 (945)
T ss_pred chhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEee
Confidence 12355666778888899999998654 344443
No 214
>PLN03025 replication factor C subunit; Provisional
Probab=94.87 E-value=0.14 Score=55.68 Aligned_cols=49 Identities=18% Similarity=0.263 Sum_probs=29.5
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHH
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~ 212 (724)
...+|||||+|.+.... -..|......+++.-.++++++..+.+...+.
T Consensus 99 ~~kviiiDE~d~lt~~a------q~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~ 147 (319)
T PLN03025 99 RHKIVILDEADSMTSGA------QQALRRTMEIYSNTTRFALACNTSSKIIEPIQ 147 (319)
T ss_pred CeEEEEEechhhcCHHH------HHHHHHHHhcccCCceEEEEeCCccccchhHH
Confidence 36799999999987532 23344445555554456666665555444443
No 215
>PRK06893 DNA replication initiation factor; Validated
Probab=94.83 E-value=0.097 Score=54.12 Aligned_cols=48 Identities=13% Similarity=0.243 Sum_probs=26.9
Q ss_pred ccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhH
Q 004900 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (724)
Q Consensus 159 l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~ 208 (724)
.++|||||+|.+......-...|.-+..+.. .+.+++++|++.+|...
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~--~~~~illits~~~p~~l 139 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELAIFDLFNRIKE--QGKTLLLISADCSPHAL 139 (229)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHH--cCCcEEEEeCCCChHHc
Confidence 6899999999875321100111111222222 24567788888877654
No 216
>PRK12377 putative replication protein; Provisional
Probab=94.78 E-value=0.17 Score=53.09 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=25.4
Q ss_pred CcEEEEcCCCchHHHHHH-HH-HHcCCCeEEEEcCcHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ-IP-ALAKPGIVLVVSPLIALMEN 93 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp-al~~~~~vLVlsPl~aL~~q 93 (724)
..+++.+|+|+|||.... +. .+...+..+++++..+|+.+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 578999999999995332 22 23344554555566666654
No 217
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.72 E-value=0.84 Score=50.99 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=33.5
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHh-hCCCCCEEEEeecCChhhHHHHHHhhc
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YLPDVPILALTATAAPKVQKDVMESLC 216 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~-~~p~~pil~LSAT~~~~v~~di~~~l~ 216 (724)
..++|+||-+-+... -......+..+.. ..|+..++.++||........+.+.+.
T Consensus 320 ~~DvVLIDTaGRs~k----d~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~ 375 (436)
T PRK11889 320 RVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 375 (436)
T ss_pred CCCEEEEeCccccCc----CHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhc
Confidence 478999998876432 1222344444433 234545777999988776666666554
No 218
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.67 E-value=0.23 Score=48.86 Aligned_cols=48 Identities=19% Similarity=0.071 Sum_probs=32.2
Q ss_pred EEEEcCCCchHHHHHH---HHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCc
Q 004900 56 CFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (724)
Q Consensus 56 vlv~apTGsGKTl~~~---lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~ 104 (724)
+++.+|+|+|||...+ ...+..+..+++++.. +-..+..+.+..+|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e-~~~~~~~~~~~~~g~~ 52 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE-ESPEELIENAESLGWD 52 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC-CCHHHHHHHHHHcCCC
Confidence 6889999999997432 3344567788888754 3345556666666654
No 219
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.27 Score=56.14 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=16.3
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa 74 (724)
.+++.+|.|+|||.++.+.+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36999999999998765544
No 220
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.57 E-value=0.93 Score=51.38 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=34.2
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhh--CCCCCEEEEeecCChhhHHHHHHhhc
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY--LPDVPILALTATAAPKVQKDVMESLC 216 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~--~p~~pil~LSAT~~~~v~~di~~~l~ 216 (724)
..++|+||.+-.... + ......+..+... .+....++++||........+...+.
T Consensus 299 ~~DlVlIDt~G~~~~---d-~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 299 DCDVILIDTAGRSQR---D-KRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred CCCEEEEeCCCCCCC---C-HHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 479999999865321 1 1122334444441 23334788999999888887777664
No 221
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.50 E-value=0.24 Score=53.06 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (724)
.+++++++||.|||.+.
T Consensus 62 p~lLivG~snnGKT~Ii 78 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMII 78 (302)
T ss_pred CceEEecCCCCcHHHHH
Confidence 47999999999999864
No 222
>PRK08084 DNA replication initiation factor; Provisional
Probab=94.48 E-value=0.15 Score=52.86 Aligned_cols=18 Identities=17% Similarity=0.235 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
..+++.+|+|+|||....
T Consensus 46 ~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 578999999999996443
No 223
>PRK06921 hypothetical protein; Provisional
Probab=94.39 E-value=0.66 Score=49.20 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=24.4
Q ss_pred CCcEEEEcCCCchHHHHHH-H-HHHcCC-CeEEEEcCcHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQ-I-PALAKP-GIVLVVSPLIALMEN 93 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-l-pal~~~-~~vLVlsPl~aL~~q 93 (724)
+..+++.+|+|+|||.... + -.+... +..++.++...++.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHH
Confidence 5679999999999995332 2 223332 444444555555443
No 224
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.28 E-value=0.18 Score=60.49 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=65.6
Q ss_pred CceEEEEecccccHHHHHHHHHhC-CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~-gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d 334 (724)
+.++||.++++..+.++++.|++. |..+..+||+++..+|.....+..+|+.+|+|+|...-. +.+.++.+||..+
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liVvDE 266 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLIIVDE 266 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEEEEC
Confidence 467999999999999999999874 888999999999999999999999999999999974332 5677888888655
No 225
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.16 E-value=0.94 Score=50.42 Aligned_cols=124 Identities=19% Similarity=0.247 Sum_probs=68.0
Q ss_pred CCcEEEEcCCCchHHHHHH-HHH----Hc-CCCeEEEEcCc-HHHHHHHHHHHHH-cCCceeeecccchHHHHHHHHhhh
Q 004900 53 GRDCFCLMPTGGGKSMCYQ-IPA----LA-KPGIVLVVSPL-IALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDL 124 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-lpa----l~-~~~~vLVlsPl-~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~~~~i~~~l 124 (724)
++-+.+++|||.|||.+-. |.+ +. +....||-.-+ |-=+..|...+.+ +|++.....
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~--------------- 267 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVY--------------- 267 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEec---------------
Confidence 5678889999999997533 222 12 23445555544 3334444444333 444443322
Q ss_pred hcCCCCccEEEeCcccccChh-HHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCC---CC-CEEEE
Q 004900 125 DSGKPSLRLLYVTPELTATPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP---DV-PILAL 199 (724)
Q Consensus 125 ~~~~~~~~il~~TPE~i~T~~-~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p---~~-pil~L 199 (724)
+|. +...+. .....++|.||=+-+ .++. -..+.++...+. ++ -.+.|
T Consensus 268 ------------------~~~el~~ai~---~l~~~d~ILVDTaGr------s~~D-~~~i~el~~~~~~~~~i~~~Lvl 319 (407)
T COG1419 268 ------------------SPKELAEAIE---ALRDCDVILVDTAGR------SQYD-KEKIEELKELIDVSHSIEVYLVL 319 (407)
T ss_pred ------------------CHHHHHHHHH---HhhcCCEEEEeCCCC------CccC-HHHHHHHHHHHhccccceEEEEE
Confidence 221 111221 122358888887654 1221 133444444332 22 36889
Q ss_pred eecCChhhHHHHHHhhccCC
Q 004900 200 TATAAPKVQKDVMESLCLQN 219 (724)
Q Consensus 200 SAT~~~~v~~di~~~l~l~~ 219 (724)
|||.-..+..+|...+..-+
T Consensus 320 sat~K~~dlkei~~~f~~~~ 339 (407)
T COG1419 320 SATTKYEDLKEIIKQFSLFP 339 (407)
T ss_pred ecCcchHHHHHHHHHhccCC
Confidence 99999999999988876544
No 226
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.14 E-value=0.17 Score=65.14 Aligned_cols=65 Identities=17% Similarity=0.238 Sum_probs=45.8
Q ss_pred CCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHH--HHHHH---c--CCCeEEEEcCcHHHHHHHHHHHHHcCCcee
Q 004900 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY--QIPAL---A--KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~--~lpal---~--~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~ 106 (724)
.|++.|.+|+..++.+ +-+++.+..|+|||... ++-++ . .+..++.+.||-.-+. .|...|+.+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~----~L~e~Gi~A~ 908 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVG----EMRSAGVDAQ 908 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHH----HHHHhCchHh
Confidence 6899999999999965 56889999999999763 22222 1 2456888999965543 3444566543
No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.07 E-value=0.46 Score=49.76 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=22.7
Q ss_pred CcEEEEcCCCchHHHHHHH--HHHcCCCeEEEEcCcHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALME 92 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l--pal~~~~~vLVlsPl~aL~~ 92 (724)
..+++.+++|+|||..... -.+...+..+++++...|+.
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 4689999999999964332 22333344444444444443
No 228
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=93.97 E-value=0.11 Score=62.37 Aligned_cols=77 Identities=19% Similarity=0.203 Sum_probs=66.3
Q ss_pred CCceEEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cccccCCCCcceEE
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a-~g~GIDip~V~~VI 331 (724)
.+.+++|.++|+.-+.++++.+++ .|+++..+||+++..+|..+++.+.+|+.+|+|+|.+ +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 356799999999999988887765 3789999999999999999999999999999999986 44567888999988
Q ss_pred ee
Q 004900 332 HF 333 (724)
Q Consensus 332 ~~ 333 (724)
.-
T Consensus 389 ID 390 (681)
T PRK10917 389 ID 390 (681)
T ss_pred Ee
Confidence 43
No 229
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.90 E-value=0.27 Score=57.92 Aligned_cols=52 Identities=19% Similarity=0.329 Sum_probs=30.8
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHH
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~ 213 (724)
.+...++||||+|.|+.-. ...|.+..+..|..-+++|..|-...+...|..
T Consensus 122 ~gr~KViIIDEah~Ls~~A------aNALLKTLEEPP~~v~FILaTtep~kLlpTIrS 173 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHA------FNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS 173 (700)
T ss_pred cCCceEEEEEChHhcCHHH------HHHHHHhhccCCCCceEEEEeCChHhhhhHHHH
Confidence 4567899999999997522 234444444444444555556655555544443
No 230
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.90 E-value=0.74 Score=51.18 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=30.5
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhh
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESL 215 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l 215 (724)
..++|+||++-.... + ......+..+.... +.-.++.++||....+..++...+
T Consensus 215 ~~DlVLIDTaG~~~~---d-~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f 269 (374)
T PRK14722 215 NKHMVLIDTIGMSQR---D-RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAY 269 (374)
T ss_pred CCCEEEEcCCCCCcc---c-HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHH
Confidence 368999999864321 0 11112233332211 223489999999888877665544
No 231
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.85 E-value=0.19 Score=59.76 Aligned_cols=137 Identities=16% Similarity=0.104 Sum_probs=84.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHc------------CCCeEEEEcCcHHHHHHHHHHHHHcC----CceeeecccchHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPALA------------KPGIVLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKT 118 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpal~------------~~~~vLVlsPl~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~ 118 (724)
-.|+.--.|-|||...+...+. ..+.+|||+|+ +++.||..++.+.. ..+.++++ +.
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g------r~ 226 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG------RT 226 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc------cc
Confidence 3577779999999865443332 23468999998 67789999984422 12233333 11
Q ss_pred HHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEE
Q 004900 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILA 198 (724)
Q Consensus 119 ~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~ 198 (724)
..... ...++++++|+.++.+..+.. -.+-.||+||||.+..+.- ......-.+.....-+
T Consensus 227 kd~~e----l~~~dVVltTy~il~~~~l~~--------i~w~Riildea~~ikn~~t-------q~~~a~~~L~a~~RWc 287 (674)
T KOG1001|consen 227 KDKSE----LNSYDVVLTTYDILKNSPLVK--------IKWLRIVLDEAHTIKNKDT-------QIFKAVCQLDAKYRWC 287 (674)
T ss_pred cccch----hcCCceEEeeHHHhhcccccc--------eeEEEEEeccccccCCcch-------Hhhhhheeeccceeee
Confidence 11111 123679999999888533211 1256799999999987542 1222222222344568
Q ss_pred EeecCChhhHHHHHHhhcc
Q 004900 199 LTATAAPKVQKDVMESLCL 217 (724)
Q Consensus 199 LSAT~~~~v~~di~~~l~l 217 (724)
||+|+......++...+..
T Consensus 288 LtgtPiqn~~~~lysl~~f 306 (674)
T KOG1001|consen 288 LTGTPIQNNLDELYSLFKF 306 (674)
T ss_pred ecCChhhhhHHHHHHHHHH
Confidence 8999999988888776654
No 232
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.69 E-value=0.67 Score=50.72 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=26.2
Q ss_pred cCCcEEEEcCCCchHHHHHH--HHHHcCCCeEEEEcCcHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ--IPALAKPGIVLVVSPLIALMEN 93 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~--lpal~~~~~vLVlsPl~aL~~q 93 (724)
.+..+++.+|||+|||.... .-.+...+..++..+...|+.+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~ 225 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEI 225 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHH
Confidence 35789999999999996332 2223344445555555566543
No 233
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.68 E-value=0.25 Score=57.17 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=64.9
Q ss_pred CceEEEEecccccHHHHHHHHHhC-CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~-gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d 334 (724)
+.++||.++++.-+.++++.|++. |..+..+||+++..+|..+..+..+|+.+|+|+|...-. ..+.++.+||..+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 457999999999999999999875 778899999999999999999999999999999976433 4567888888554
No 234
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.64 E-value=0.49 Score=59.14 Aligned_cols=68 Identities=28% Similarity=0.241 Sum_probs=46.5
Q ss_pred CCCCHHHHHHHHHHHcC-CcEEEEcCCCchHHHHHHH--HHH-cCCCeEEEEcCcHHHHHHHHHHHHH-cCCceeee
Q 004900 37 AQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQI--PAL-AKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g-~dvlv~apTGsGKTl~~~l--pal-~~~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l 108 (724)
..|++.|.+++..+..+ +-+++.++-|+|||...-. -++ ..+..++.+.||-.-+. .|.. .|+.+..+
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~----~L~e~~Gi~a~TI 452 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAE----GLEKEAGIQSRTL 452 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHH----HHHHhhCCCeeeH
Confidence 35899999999988654 5578899999999975322 222 24678889999955443 3433 46655443
No 235
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.55 E-value=1.7 Score=48.96 Aligned_cols=122 Identities=19% Similarity=0.151 Sum_probs=65.9
Q ss_pred cEEEEcCCCchHHHHHHHHH----HcCCCeEEEEc--CcHHHHHHHHHHHH-HcCCceeeecccchHHHHHHHHhhhhcC
Q 004900 55 DCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS--PLIALMENQVIGLK-EKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa----l~~~~~vLVls--Pl~aL~~qqv~~l~-~~gi~~~~l~s~~~~~~~~~i~~~l~~~ 127 (724)
-+++++|+|+|||....-.+ +..+.++.++. +.+..+.+|..... ..|++.....
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~------------------ 286 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVK------------------ 286 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehH------------------
Confidence 36789999999997644322 12344554444 55666666555542 3344321100
Q ss_pred CCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhC----CCCCEEEEeecC
Q 004900 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL----PDVPILALTATA 203 (724)
Q Consensus 128 ~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~----p~~pil~LSAT~ 203 (724)
. ...+.........++|+||=+-.... -......|..+.... |.-.++.|+||.
T Consensus 287 ------------~------~~~l~~~l~~~~~D~VLIDTaGr~~r----d~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~ 344 (432)
T PRK12724 287 ------------D------IKKFKETLARDGSELILIDTAGYSHR----NLEQLERMQSFYSCFGEKDSVENLLVLSSTS 344 (432)
T ss_pred ------------H------HHHHHHHHHhCCCCEEEEeCCCCCcc----CHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC
Confidence 0 00111111123478899997654321 123334455544432 234589999999
Q ss_pred ChhhHHHHHHhhc
Q 004900 204 APKVQKDVMESLC 216 (724)
Q Consensus 204 ~~~v~~di~~~l~ 216 (724)
......++...+.
T Consensus 345 ~~~~~~~~~~~f~ 357 (432)
T PRK12724 345 SYHHTLTVLKAYE 357 (432)
T ss_pred CHHHHHHHHHHhc
Confidence 9877777766553
No 236
>PRK05973 replicative DNA helicase; Provisional
Probab=93.46 E-value=0.95 Score=47.19 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=50.0
Q ss_pred CCCCchHHHHHHHHHHcCCCCCCHHHHHH---------HHHHHcCCcEEEEcCCCchHHHHHH---HHHHcCCCeEEEEc
Q 004900 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDA---------IQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVS 85 (724)
Q Consensus 18 ~~~~~~~~l~~~L~~~fG~~~lr~~Q~ea---------I~ail~g~dvlv~apTGsGKTl~~~---lpal~~~~~vLVls 85 (724)
..+++++.+..+..+ -||....-....+ ..-+..|.-+++.+++|+|||...+ .-+...+..+++++
T Consensus 21 ~~~~~~~~~~~~a~~-~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 21 QNIPLHEALDRIAAE-EGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred cCCcHHHHHHHHHHH-hccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 346666666666655 4876543333222 2222344567889999999997533 22334566788887
Q ss_pred CcHHHHHHHHHHHHHcCCc
Q 004900 86 PLIALMENQVIGLKEKGIA 104 (724)
Q Consensus 86 Pl~aL~~qqv~~l~~~gi~ 104 (724)
---. ..+..+++..+|+.
T Consensus 100 lEes-~~~i~~R~~s~g~d 117 (237)
T PRK05973 100 LEYT-EQDVRDRLRALGAD 117 (237)
T ss_pred EeCC-HHHHHHHHHHcCCC
Confidence 4433 35556667776643
No 237
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.44 E-value=0.076 Score=65.28 Aligned_cols=149 Identities=14% Similarity=0.132 Sum_probs=89.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHc---------------------CCCeEEEEcCcHHHHHHHHHHHHHc---CCceee
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPALA---------------------KPGIVLVVSPLIALMENQVIGLKEK---GIAGEF 107 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpal~---------------------~~~~vLVlsPl~aL~~qqv~~l~~~---gi~~~~ 107 (724)
.|+++++.-..|.|||.+-+...+. ..|.||||+|. ++..||..++... ++++.+
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~ 451 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLL 451 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEE
Confidence 3567788889999999876543331 15789999999 5557999988762 333332
Q ss_pred ecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHH---------HHHhhh-hc-CC-----ccEEEEccccccc
Q 004900 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS---------KLKKIH-SR-GL-----LNLVAIDEAHCIS 171 (724)
Q Consensus 108 l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~---------~L~~~~-~~-~~-----l~lIVIDEAH~l~ 171 (724)
..+-....-... ..--+++|+++|...+.+.-... ++.+.+ .. .. +-.|++|||+.+-
T Consensus 452 Y~Girk~~~~~~------~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMve 525 (1394)
T KOG0298|consen 452 YFGIRKTFWLSP------FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVE 525 (1394)
T ss_pred EechhhhcccCc------hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhc
Confidence 221111100000 11124899999988776532111 111100 00 00 2348999999875
Q ss_pred cCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhh
Q 004900 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (724)
Q Consensus 172 ~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l 215 (724)
.-. ....++...++.+-+-+.|+|+-.. ..++.-.|
T Consensus 526 sss-------S~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll 561 (1394)
T KOG0298|consen 526 SSS-------SAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLL 561 (1394)
T ss_pred chH-------HHHHHHHHHhhhhceeeecCCchhh-hhhhHHHH
Confidence 421 4566677777888899999999888 56555444
No 238
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.41 E-value=0.48 Score=57.71 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=27.9
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHH
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~d 210 (724)
.+...++||||||.|.. .....|.+.....|..-+++|..|-...+...
T Consensus 117 ~gk~KViIIDEAh~LT~------eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSR------SSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred cCCcEEEEEechHhcCH------HHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence 35578999999999864 22344444455444433444445544444433
No 239
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.37 E-value=0.6 Score=48.17 Aligned_cols=115 Identities=18% Similarity=0.155 Sum_probs=54.7
Q ss_pred cCCcEEEEcCCCchHHHHHH-H--HHHcC-CCeEEEEc---CcHHHHHHHHHHHHHcCCceeeeccc-chHHHHH---HH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ-I--PALAK-PGIVLVVS---PLIALMENQVIGLKEKGIAGEFLSST-QTMQVKT---KI 120 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~-l--pal~~-~~~vLVls---Pl~aL~~qqv~~l~~~gi~~~~l~s~-~~~~~~~---~i 120 (724)
.|.-+++.|++|+|||...+ + -.... +..+++++ |...++...... ..++....+... ....... ..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRLLAS--ESGISLSKLRTGSLSDEDWERLAEA 89 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHHHHH--hcCCCHHHHhcCCCCHHHHHHHHHH
Confidence 45567889999999996432 2 22233 77888888 344444433221 133332211111 1111111 11
Q ss_pred HhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 121 YEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 121 ~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
...+. ...+.+.....+........+........+++||||=.+.+..
T Consensus 90 ~~~~~----~~~~~i~~~~~~~~~~l~~~i~~~~~~~~~~~vvID~l~~l~~ 137 (242)
T cd00984 90 IGELK----ELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSG 137 (242)
T ss_pred HHHHh----cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCchhcCC
Confidence 11111 1223332221222223444444444444689999999887753
No 240
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.33 E-value=0.059 Score=60.07 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=44.2
Q ss_pred cEEEEcCCCchHHHHHHHHHHcC-CCeEEEEcCcHHHHHHHHHHHHHcCCceeeec
Q 004900 55 DCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpal~~-~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~ 109 (724)
+++++||||+|||.++.+|.+.. .+.+||+-|--++........+..|-++.+++
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEc
Confidence 47899999999999999998764 67888888999998776666666666665554
No 241
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.31 E-value=0.28 Score=59.57 Aligned_cols=77 Identities=18% Similarity=0.228 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC----C-Cceee-ecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q 004900 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG----G-ISCAA-YHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (724)
Q Consensus 244 ~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~----g-i~v~~-~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a 317 (724)
-.+..+..+.-...+.++++.++|..-+.++++.|... | ..+.. ||+.|+.+++..++++|.+|..+|||+|+.
T Consensus 111 TTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~ 190 (1187)
T COG1110 111 TTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQ 190 (1187)
T ss_pred hHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHH
Confidence 34445555444455678999999999999998888764 2 33333 999999999999999999999999999988
Q ss_pred ccc
Q 004900 318 FGM 320 (724)
Q Consensus 318 ~g~ 320 (724)
|-.
T Consensus 191 FL~ 193 (1187)
T COG1110 191 FLS 193 (1187)
T ss_pred HHH
Confidence 653
No 242
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.23 E-value=0.47 Score=53.52 Aligned_cols=21 Identities=29% Similarity=0.322 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa 74 (724)
..+++.+|+|+|||......+
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia 57 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIA 57 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999998765443
No 243
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.17 E-value=0.47 Score=56.70 Aligned_cols=76 Identities=26% Similarity=0.222 Sum_probs=64.8
Q ss_pred CceEEEEecccccHHHHHHHHHhC-C-CceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG-G-ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~-g-i~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d 334 (724)
+..+||.++.+..+.++...|+.. | ..+..||+++++.+|.+...+..+|+.+|+|.|-.+- =.-+++..+||..+
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAv-FaP~~~LgLIIvdE 265 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAV-FAPVEDLGLVAIWD 265 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeE-EeccCCCCEEEEEc
Confidence 557999999999999999999875 4 6789999999999999999999999999999997633 24566778888555
No 244
>PRK08116 hypothetical protein; Validated
Probab=93.11 E-value=1.3 Score=47.04 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=23.0
Q ss_pred cEEEEcCCCchHHHHHHHH--HHcCCCeEEEEcCcHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIP--ALAKPGIVLVVSPLIALMEN 93 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lp--al~~~~~vLVlsPl~aL~~q 93 (724)
.+++.+++|+|||...... .+...+..++..+...|+..
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 4899999999999643321 22222444444455555543
No 245
>PF13173 AAA_14: AAA domain
Probab=93.10 E-value=0.47 Score=44.19 Aligned_cols=40 Identities=25% Similarity=0.437 Sum_probs=26.4
Q ss_pred ccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChh
Q 004900 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (724)
Q Consensus 159 l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~ 206 (724)
-.+|+|||+|.+.+|. ..+..+....++.++ .+|++....
T Consensus 62 ~~~i~iDEiq~~~~~~-------~~lk~l~d~~~~~~i-i~tgS~~~~ 101 (128)
T PF13173_consen 62 KKYIFIDEIQYLPDWE-------DALKFLVDNGPNIKI-ILTGSSSSL 101 (128)
T ss_pred CcEEEEehhhhhccHH-------HHHHHHHHhccCceE-EEEccchHH
Confidence 5689999999998876 455556665555544 455554433
No 246
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=93.03 E-value=4.5 Score=50.52 Aligned_cols=56 Identities=25% Similarity=0.164 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCc-EEEEcCCCchHHHHHHH--HHHc-CCCeEEEEcCcHHHH
Q 004900 35 GHAQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQI--PALA-KPGIVLVVSPLIALM 91 (724)
Q Consensus 35 G~~~lr~~Q~eaI~ail~g~d-vlv~apTGsGKTl~~~l--pal~-~~~~vLVlsPl~aL~ 91 (724)
|+ .|++.|.+++..++.+++ +++.++.|+|||...-. -++. .+..+++++||---+
T Consensus 344 g~-~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA 403 (988)
T PRK13889 344 GL-VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAA 403 (988)
T ss_pred CC-CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHH
Confidence 44 489999999999998765 57899999999975221 1222 366788999996544
No 247
>PRK04195 replication factor C large subunit; Provisional
Probab=92.99 E-value=0.61 Score=53.71 Aligned_cols=32 Identities=19% Similarity=0.074 Sum_probs=20.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCeEEEE
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpal~~~~~vLVl 84 (724)
.+.+++.+|+|+|||......+-..+..++.+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 35799999999999986554433333333333
No 248
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.88 E-value=0.55 Score=49.30 Aligned_cols=143 Identities=18% Similarity=0.156 Sum_probs=70.7
Q ss_pred cEEEEcCCCchHHHHHHHH---HHcC-CCeEEEEcCc---HHHHHHHHHHHHHcCCceeeeccc-chHHHHHHHHhhhhc
Q 004900 55 DCFCLMPTGGGKSMCYQIP---ALAK-PGIVLVVSPL---IALMENQVIGLKEKGIAGEFLSST-QTMQVKTKIYEDLDS 126 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lp---al~~-~~~vLVlsPl---~aL~~qqv~~l~~~gi~~~~l~s~-~~~~~~~~i~~~l~~ 126 (724)
=+++.|+||.|||...+-. +... +..|++++.- ..++.-.+..+ .+++..-+..+ ....+...+......
T Consensus 21 L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~--s~v~~~~i~~g~l~~~e~~~~~~~~~~ 98 (259)
T PF03796_consen 21 LTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARL--SGVPYNKIRSGDLSDEEFERLQAAAEK 98 (259)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHH--HTSTHHHHHCCGCHHHHHHHHHHHHHH
T ss_pred EEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHh--hcchhhhhhccccCHHHHHHHHHHHHH
Confidence 3567789999999754322 2234 4788888854 34433333322 24433322222 233333333222111
Q ss_pred CCCCccEEE-eCcccccChhHHHHHHhhhhc-CCccEEEEccccccccCCCCChHHHHHH-------HHHHhhCCCCCEE
Q 004900 127 GKPSLRLLY-VTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKL-------SSLRNYLPDVPIL 197 (724)
Q Consensus 127 ~~~~~~il~-~TPE~i~T~~~l~~L~~~~~~-~~l~lIVIDEAH~l~~~G~dFrp~y~~L-------~~l~~~~p~~pil 197 (724)
.. ...+.+ -+|. +........+...... ..+++||||=.|.+..... ....+..+ ..+...+ ++|++
T Consensus 99 l~-~~~l~i~~~~~-~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~-~~~~~~~~~~i~~~Lk~lA~~~-~i~vi 174 (259)
T PF03796_consen 99 LS-DLPLYIEDTPS-LTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDS-SDNRRQEIGEISRELKALAKEL-NIPVI 174 (259)
T ss_dssp HH-TSEEEEEESSS--BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCS-SSCCHHHHHHHHHHHHHHHHHH-TSEEE
T ss_pred Hh-hCcEEEECCCC-CCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCC-CCCHHHHHHHHHHHHHHHHHHc-CCeEE
Confidence 11 123333 3332 2223333334434333 6789999999999977531 22222322 2222222 88999
Q ss_pred EEeecC
Q 004900 198 ALTATA 203 (724)
Q Consensus 198 ~LSAT~ 203 (724)
++|..-
T Consensus 175 ~~sQln 180 (259)
T PF03796_consen 175 ALSQLN 180 (259)
T ss_dssp EEEEBS
T ss_pred EccccC
Confidence 988864
No 249
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.80 E-value=0.71 Score=55.74 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=16.3
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa 74 (724)
.+++.+|+|+|||....+.+
T Consensus 54 slLL~GPpGtGKTTLA~aIA 73 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIA 73 (725)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 78999999999998665443
No 250
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=92.78 E-value=0.7 Score=42.26 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.1
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lpa 74 (724)
+++.+|.|+|||.....-+
T Consensus 1 ill~G~~G~GKT~l~~~la 19 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALA 19 (132)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHH
Confidence 5899999999998655444
No 251
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.78 E-value=0.79 Score=52.27 Aligned_cols=49 Identities=18% Similarity=0.321 Sum_probs=26.1
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHH
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~ 209 (724)
..++|+|||+|.+..+...-...+..+..+.. .+. .+.+|++.++....
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~--~~k-~IIlts~~~p~~l~ 250 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHT--EGK-LIVISSTCAPQDLK 250 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHH--CCC-cEEEecCCCHHHHh
Confidence 37899999999986533221222222222222 234 45666665554443
No 252
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.74 E-value=0.44 Score=62.18 Aligned_cols=67 Identities=18% Similarity=0.232 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHH--HHHHHc-----CCCeEEEEcCcHHHHHHHHHHHHHcCCceeee
Q 004900 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY--QIPALA-----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~--~lpal~-----~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l 108 (724)
.|++.|.+|+..++.+ +-+++.+..|+|||... ++-++. .+..++.++||-.-+. .|...|+.+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk----~L~e~Gi~A~TI 1042 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVG----EMRSAGVDAQTL 1042 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHH----HHHhcCcchhhH
Confidence 5899999999999976 45788999999999753 222221 2346888899965544 444566655433
No 253
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=92.73 E-value=0.094 Score=60.00 Aligned_cols=55 Identities=31% Similarity=0.477 Sum_probs=45.6
Q ss_pred cEEEEcCCCchHHHHHHHHHHcC-CCeEEEEcCcHHHHHHHHHHHHHcCCceeeec
Q 004900 55 DCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpal~~-~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~ 109 (724)
+++++||||+|||..+.+|.+.. .+.+||+-|--+|.......+++.|-++.+++
T Consensus 46 h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vld 101 (469)
T PF02534_consen 46 HVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVLD 101 (469)
T ss_pred EEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEee
Confidence 69999999999999999998864 56788888999998887777777776655554
No 254
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.64 E-value=0.66 Score=54.45 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.3
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa 74 (724)
+-.|+.+|.|+|||.+.-+-+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999998765543
No 255
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.55 E-value=1 Score=53.25 Aligned_cols=20 Identities=25% Similarity=0.160 Sum_probs=16.2
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa 74 (724)
.+|+.+|.|+|||.+..+.+
T Consensus 40 a~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 57889999999998765544
No 256
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.52 E-value=2 Score=46.32 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=23.8
Q ss_pred ccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhh
Q 004900 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (724)
Q Consensus 159 l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v 207 (724)
.++|||||+|.+... .....|..+....+..-.+.+|++.....
T Consensus 101 ~~vliiDe~d~l~~~-----~~~~~L~~~le~~~~~~~~Ilt~n~~~~l 144 (316)
T PHA02544 101 GKVIIIDEFDRLGLA-----DAQRHLRSFMEAYSKNCSFIITANNKNGI 144 (316)
T ss_pred CeEEEEECcccccCH-----HHHHHHHHHHHhcCCCceEEEEcCChhhc
Confidence 578999999988321 11233444455544333445555543333
No 257
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=92.45 E-value=5.4 Score=48.60 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHcC-CcEEEEcCCCchHHHHHH--HHHHc-CCCeEEEEcCcHHHH
Q 004900 38 QFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALM 91 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g-~dvlv~apTGsGKTl~~~--lpal~-~~~~vLVlsPl~aL~ 91 (724)
.|.+.|.+|+..++.+ +-+++.++.|+|||...- +-++. .+..+++++||--.+
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa 409 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAA 409 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHH
Confidence 4889999999999875 556889999999996432 22222 466788899995544
No 258
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=92.44 E-value=2.2 Score=50.16 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=77.9
Q ss_pred hHHHHHHHHHH----hcCCceEEEEecccccHHHHHHHHHhCCCc-------eeeecCCCCHHHHHHHHHHhh----cCC
Q 004900 244 DAYADLCSVLK----ANGDTCAIVYCLERTTCDELSAYLSAGGIS-------CAAYHAGLNDKARSSVLDDWI----SSR 308 (724)
Q Consensus 244 ~k~~~L~~lLk----~~~~~~~IIf~~sr~~~e~La~~L~~~gi~-------v~~~H~~l~~~eR~~vl~~F~----~g~ 308 (724)
..+..|...+. .-+ +-+++|+++-+....+.+...+.|+- .++|-..-+ -.++++.|. .|.
T Consensus 612 ~~l~~l~~~~~nL~~~VP-gGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~ 687 (821)
T KOG1133|consen 612 EMIKDLGSSISNLSNAVP-GGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGR 687 (821)
T ss_pred HHHHHHHHHHHHHHhhCC-CcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCC
Confidence 44455544443 334 45899999999999999998876642 334444333 245566665 355
Q ss_pred ceEEEEc--cccccccCCCC--cceEEeeCCCCC--------------------------------HHHHHHHHcccCCC
Q 004900 309 KQVVVAT--VAFGMGIDRKD--VRLVCHFNIPKS--------------------------------MEAFYQESGRAGRD 352 (724)
Q Consensus 309 ~~VLVAT--~a~g~GIDip~--V~~VI~~d~P~S--------------------------------~~~yiQr~GRAGRd 352 (724)
..+|+|- --++.|||+.| .|.||..++|.. +.+.-|-+|||-|.
T Consensus 688 GaiLlaVVGGKlSEGINF~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH 767 (821)
T KOG1133|consen 688 GAILLAVVGGKLSEGINFSDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRH 767 (821)
T ss_pred CeEEEEEeccccccccccccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677664 45889999987 789999998831 22445899999998
Q ss_pred CCCCeEEEEEc
Q 004900 353 QLPSKSLLYYG 363 (724)
Q Consensus 353 G~~g~~il~~~ 363 (724)
-+.=.+|++++
T Consensus 768 ~~DYA~i~LlD 778 (821)
T KOG1133|consen 768 RKDYASIYLLD 778 (821)
T ss_pred hccceeEEEeh
Confidence 66555666654
No 259
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.44 E-value=3.1 Score=48.26 Aligned_cols=54 Identities=28% Similarity=0.212 Sum_probs=31.6
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhh
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESL 215 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l 215 (724)
..++|+||.+-.... + ......+..+........+++++++........+.+.+
T Consensus 428 ~~DLVLIDTaG~s~~---D-~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~~f 481 (559)
T PRK12727 428 DYKLVLIDTAGMGQR---D-RALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVRRF 481 (559)
T ss_pred cCCEEEecCCCcchh---h-HHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHHHH
Confidence 478999999875421 1 11122333343333445688888888766666665544
No 260
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.38 E-value=0.68 Score=50.43 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=27.6
Q ss_pred CCCCCHHHHHHHHHHH----cCC---cEEEEcCCCchHHHHHH
Q 004900 36 HAQFRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 36 ~~~lr~~Q~eaI~ail----~g~---dvlv~apTGsGKTl~~~ 71 (724)
++.+.|||..++..+. .|+ -.++.+|.|.||+....
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVAL 44 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHH
Confidence 3568899999887765 343 47899999999997543
No 261
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.37 E-value=1 Score=49.33 Aligned_cols=33 Identities=18% Similarity=0.085 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHcC----CcEEEEcCCCchHHHHHH
Q 004900 39 FRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 39 lr~~Q~eaI~ail~g----~dvlv~apTGsGKTl~~~ 71 (724)
+.|||...+..++.. +-.++.+|.|.||+..+.
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHH
Confidence 468999999888754 247899999999997543
No 262
>PHA02533 17 large terminase protein; Provisional
Probab=92.36 E-value=0.63 Score=54.21 Aligned_cols=63 Identities=22% Similarity=0.198 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHH-----cCCCeEEEEcCcHHHHHHHHHHHHH
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-----AKPGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal-----~~~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
.|+|+|.+.+..+..++-.++..+=..|||.+....++ ..+..+++++|+..-+....+.++.
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~ 126 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQ 126 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 47789999999887677778889999999976543222 2456899999998887776666654
No 263
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.22 E-value=0.25 Score=58.86 Aligned_cols=75 Identities=21% Similarity=0.192 Sum_probs=64.4
Q ss_pred CceEEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc-cccCCCCcceEEe
Q 004900 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-MGIDRKDVRLVCH 332 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g-~GIDip~V~~VI~ 332 (724)
+.+++|.++|+.-+.++++.+.+ .|+++..+||+++..+|..+++...+|+.+|||+|.+.- ..+++.++.+||.
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEE
Confidence 45799999999999998887765 378999999999999999999999999999999998743 4577778888874
No 264
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.21 E-value=4.7 Score=42.92 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=33.9
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhc
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~ 216 (724)
...++|+||-+=+... -......+..+.... |+..++.++||.......++.+.+.
T Consensus 153 ~~~D~ViIDt~Gr~~~----~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 153 ARVDYILIDTAGKNYR----ASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred CCCCEEEEECCCCCcC----CHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhC
Confidence 4589999999876432 122334444444332 3344778999988766666666543
No 265
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.20 E-value=0.93 Score=47.44 Aligned_cols=18 Identities=17% Similarity=0.082 Sum_probs=15.0
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
.+++.+|+|+|||.....
T Consensus 45 ~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRN 62 (269)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 578999999999986554
No 266
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=92.17 E-value=0.47 Score=50.73 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=25.5
Q ss_pred HHHHHHHHHHc---C---CcEEEEcCCCchHHHHHHHHHHc
Q 004900 42 KQLDAIQAVLS---G---RDCFCLMPTGGGKSMCYQIPALA 76 (724)
Q Consensus 42 ~Q~eaI~ail~---g---~dvlv~apTGsGKTl~~~lpal~ 76 (724)
+|..++..+.+ + -..++.+|.|+|||-+..+.+-+
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~ 80 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARA 80 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHH
Confidence 67776665542 2 36799999999999988776543
No 267
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.17 E-value=0.45 Score=63.38 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=45.9
Q ss_pred CCCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHH------HHHHc-CCCeEEEEcCcHHHHHHHHHHHHHcCCcee
Q 004900 37 AQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ------IPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~------lpal~-~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~ 106 (724)
..|++.|++|+..++.+ +-+++.++.|+|||.... .-+.. .+..++.++||-.-+ ..|+..|+.+.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa----~~L~~~g~~a~ 1092 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAV----GELKSAGVQAQ 1092 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHH----HHHHhcCCchH
Confidence 36899999999999876 446778999999997651 11122 355788899995544 34555566543
No 268
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=92.10 E-value=0.9 Score=52.27 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=42.8
Q ss_pred HHHHHHHHHHH-----cC----CcEEEEcCCCchHHHHHHHHHH----c---CCCeEEEEcCcHHHHHHHHHHHHHc
Q 004900 41 DKQLDAIQAVL-----SG----RDCFCLMPTGGGKSMCYQIPAL----A---KPGIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 41 ~~Q~eaI~ail-----~g----~dvlv~apTGsGKTl~~~lpal----~---~~~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
|+|.-++..++ .| +.+++..|=|.|||......++ . .+..++++++++.-+......++..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~ 77 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKM 77 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHH
Confidence 56777776666 22 3588999999999974332221 1 2457899999999888877777664
No 269
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.07 E-value=0.86 Score=54.64 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=28.4
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHH
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~ 209 (724)
+...++||||+|.|..-. +..|.+.++..+..-+++|+.|-...+..
T Consensus 118 gr~KVIIIDEah~LT~~A------~NALLKtLEEPP~~v~FILaTtd~~KIp~ 164 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHA------FNAMLKTLEEPPPHVKFILATTDPQKIPV 164 (830)
T ss_pred CCceEEEEeChhhCCHHH------HHHHHHHHHhcCCCeEEEEEECChhhccc
Confidence 457899999999997522 23444455555544455556664444433
No 270
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.04 E-value=0.94 Score=51.70 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
+.+++.+|+|+|||....
T Consensus 149 ~~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999997543
No 271
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.04 E-value=2 Score=47.13 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (724)
..+++.+|+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999764
No 272
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.99 E-value=1.2 Score=51.34 Aligned_cols=49 Identities=18% Similarity=0.210 Sum_probs=28.4
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHH
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di 211 (724)
+...++||||+|.+.... +..|.+.....|..-++.|.+|-...+...|
T Consensus 115 ~~~KVvIIDEah~Ls~~A------~NaLLK~LEePp~~v~fIlatte~~Kl~~tI 163 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSA------FNALLKTLEEPAPHVKFILATTEVKKIPVTI 163 (491)
T ss_pred CCceEEEEeChHhCCHHH------HHHHHHHHhCCCCCeEEEEEeCChHHHHHHH
Confidence 457899999999987522 3444444444444334555556544444433
No 273
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.95 E-value=0.69 Score=48.68 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=15.8
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
.++++.+|+|+|||...-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4689999999999986544
No 274
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.91 E-value=0.14 Score=60.26 Aligned_cols=57 Identities=21% Similarity=0.208 Sum_probs=48.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHcC-CCeEEEEcCcHHHHHHHHHHHHHcCCceeeecc
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~~-~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s 110 (724)
..++++||||+|||..+.+|.+.. ++.+||+=|--++........++.|-++..++-
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vfdP 216 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVWEP 216 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeC
Confidence 468999999999999999999875 678899999999998888888888777666553
No 275
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.90 E-value=3 Score=50.93 Aligned_cols=32 Identities=19% Similarity=0.350 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHH----cC---CcE-EEEcCCCchHHHHH
Q 004900 39 FRDKQLDAIQAVL----SG---RDC-FCLMPTGGGKSMCY 70 (724)
Q Consensus 39 lr~~Q~eaI~ail----~g---~dv-lv~apTGsGKTl~~ 70 (724)
.|.-|.+.|..++ .| ..+ ++.++||+|||++.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 4566666554443 22 244 59999999999874
No 276
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=91.82 E-value=0.11 Score=66.08 Aligned_cols=95 Identities=20% Similarity=0.235 Sum_probs=78.3
Q ss_pred ceEEEEecccccHHHHHHHHHhCC-CceeeecCCCC-----------HHHHHHHHHHhhcCCceEEEEccccccccCCCC
Q 004900 259 TCAIVYCLERTTCDELSAYLSAGG-ISCAAYHAGLN-----------DKARSSVLDDWISSRKQVVVATVAFGMGIDRKD 326 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~g-i~v~~~H~~l~-----------~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~ 326 (724)
-++|+||+.+..+..+...+++.+ .....+.|.+. +..+.+++..|...++.+|++|.+...|+|.+.
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhh
Confidence 468999999999999999887752 22333444332 123567899999999999999999999999999
Q ss_pred cceEEeeCCCCCHHHHHHHHcccCCCC
Q 004900 327 VRLVCHFNIPKSMEAFYQESGRAGRDQ 353 (724)
Q Consensus 327 V~~VI~~d~P~S~~~yiQr~GRAGRdG 353 (724)
+..|++++.|.....|+|..||+-+..
T Consensus 373 ~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcchHHHHHHhhcccccch
Confidence 999999999999999999999997653
No 277
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.82 E-value=0.83 Score=52.46 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=15.7
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa 74 (724)
.+++.+|+|+|||....+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA 57 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILA 57 (472)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998765433
No 278
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=91.79 E-value=6.6 Score=52.81 Aligned_cols=55 Identities=11% Similarity=0.061 Sum_probs=41.0
Q ss_pred CCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHH--HHHHc-CCCeEEEEcCcHHHHH
Q 004900 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQ--IPALA-KPGIVLVVSPLIALME 92 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~--lpal~-~~~~vLVlsPl~aL~~ 92 (724)
.+.+.|.+++..++.. +=.++.++.|+|||.... +-++. .+..+++++|+-.-+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~ 488 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQ 488 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHH
Confidence 4789999999999876 457889999999997532 22222 4678999999965443
No 279
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.84 Score=52.03 Aligned_cols=33 Identities=27% Similarity=0.299 Sum_probs=23.3
Q ss_pred cEEEEcCCCchHHHHHHHHHHc-CCCeEEEEcCc
Q 004900 55 DCFCLMPTGGGKSMCYQIPALA-KPGIVLVVSPL 87 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpal~-~~~~vLVlsPl 87 (724)
.+++.+|.|+|||..+.-.++. .-+.+=|++|-
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe 573 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPFVKIISPE 573 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCeEEEeChH
Confidence 5899999999999644433433 44667777775
No 280
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.65 E-value=1 Score=46.17 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCchHHHH
Q 004900 53 GRDCFCLMPTGGGKSMC 69 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~ 69 (724)
++.+++.+|+|+|||..
T Consensus 42 ~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 35789999999999964
No 281
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=91.57 E-value=1 Score=55.09 Aligned_cols=47 Identities=23% Similarity=0.338 Sum_probs=28.1
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHH
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~ 209 (724)
+...+|||||+|.|..-+ ...|.++++..|..-+++|..|-...+..
T Consensus 119 ~~~KV~IIDEad~lt~~a------~NaLLK~LEEpP~~~~fIl~tt~~~kLl~ 165 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQG------FNALLKIVEEPPEHLKFIFATTEPDKVIG 165 (824)
T ss_pred CCceEEEEechhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCChhhhhH
Confidence 457899999999998633 34455555555544344444454444333
No 282
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.54 E-value=1.1 Score=52.96 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=27.7
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHH
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~ 209 (724)
.+...++||||+|.|+.-. +..|.+.....|..-++.|.+|-...+..
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a------~NaLLKtLEEPP~~~~fIL~Ttd~~kil~ 169 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTA------FNAMLKTLEEPPEYLKFVLATTDPQKVPV 169 (618)
T ss_pred cCCceEEEEEChhhCCHHH------HHHHHHhcccCCCCeEEEEEECCchhhhH
Confidence 3457899999999987522 33344444444444345555565444433
No 283
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.49 E-value=1.3 Score=53.12 Aligned_cols=133 Identities=20% Similarity=0.245 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHHcCC--cEEEEcCCCchHHHHHHHH---HHcCC--CeEEEEcCcHHHHHHHHHH----HHHcCCce
Q 004900 37 AQFRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMCYQIP---ALAKP--GIVLVVSPLIALMENQVIG----LKEKGIAG 105 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~--dvlv~apTGsGKTl~~~lp---al~~~--~~vLVlsPl~aL~~qqv~~----l~~~gi~~ 105 (724)
+....-|.+.+..++.++ -+++.|.-|=|||.+.=|. +.... ..++|.+|+.+-++..... |..+|.+-
T Consensus 213 T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~ 292 (758)
T COG1444 213 TEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKR 292 (758)
T ss_pred ChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCcc
Confidence 333344444555566543 5778999999999764322 22233 4899999998766544433 33344332
Q ss_pred eeecccchHHHHHHHHhhhh-cCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHH
Q 004900 106 EFLSSTQTMQVKTKIYEDLD-SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL 184 (724)
Q Consensus 106 ~~l~s~~~~~~~~~i~~~l~-~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L 184 (724)
.+..... ..+. .......|-|..|.... .. -+++|||||--|.- .-|
T Consensus 293 ~v~~d~~---------g~~~~~~~~~~~i~y~~P~~a~-~~-------------~DllvVDEAAaIpl---------plL 340 (758)
T COG1444 293 KVAPDAL---------GEIREVSGDGFRIEYVPPDDAQ-EE-------------ADLLVVDEAAAIPL---------PLL 340 (758)
T ss_pred ccccccc---------cceeeecCCceeEEeeCcchhc-cc-------------CCEEEEehhhcCCh---------HHH
Confidence 1111110 0011 11123557788887543 11 47899999987642 223
Q ss_pred HHHHhhCCCCCEEEEeecCC
Q 004900 185 SSLRNYLPDVPILALTATAA 204 (724)
Q Consensus 185 ~~l~~~~p~~pil~LSAT~~ 204 (724)
..+.. ..+.++||.|..
T Consensus 341 ~~l~~---~~~rv~~sTTIh 357 (758)
T COG1444 341 HKLLR---RFPRVLFSTTIH 357 (758)
T ss_pred HHHHh---hcCceEEEeeec
Confidence 33333 446789999954
No 284
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.41 E-value=0.37 Score=49.63 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=17.1
Q ss_pred cEEEEcCCCchHHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPAL 75 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpal 75 (724)
++++.+|+|.|||..+.+-+-
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEECCCccchhHHHHHHHh
Confidence 689999999999986665443
No 285
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.40 E-value=1.3 Score=51.52 Aligned_cols=43 Identities=26% Similarity=0.335 Sum_probs=24.9
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCC
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~ 204 (724)
.+...++||||+|.++.- .+..|.+.....|..-++.|.+|-.
T Consensus 117 ~~~~kV~iIDE~~~ls~~------a~naLLk~LEepp~~~~fIlattd~ 159 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSGH------SFNALLKTLEEPPSHVKFILATTDH 159 (509)
T ss_pred cCCcEEEEEEChHhcCHH------HHHHHHHHHhccCCCeEEEEEECCh
Confidence 355789999999998752 2344444555544333334433433
No 286
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.32 E-value=0.82 Score=52.74 Aligned_cols=108 Identities=18% Similarity=0.134 Sum_probs=67.6
Q ss_pred HHHHHHHcC-----CcEEEEcCCCchHHHHHH---HHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHH
Q 004900 45 DAIQAVLSG-----RDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (724)
Q Consensus 45 eaI~ail~g-----~dvlv~apTGsGKTl~~~---lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~ 116 (724)
..+..++.| .-+++.+|+|+|||...+ .-++.++.++++++-- +-..|...++.++|+...
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e-Es~~~i~~~~~~lg~~~~---------- 318 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE-ESRAQLLRNAYSWGIDFE---------- 318 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee-CCHHHHHHHHHHcCCChH----------
Confidence 445666644 568899999999996432 2334566788888843 334666777777775321
Q ss_pred HHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccc
Q 004900 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (724)
Q Consensus 117 ~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l 170 (724)
.....+ .+.++...|+...-..++..+.........++||||=..-+
T Consensus 319 -----~~~~~g--~l~~~~~~p~~~~~~~~~~~i~~~i~~~~~~~vvIDsi~~~ 365 (484)
T TIGR02655 319 -----EMEQQG--LLKIICAYPESAGLEDHLQIIKSEIADFKPARIAIDSLSAL 365 (484)
T ss_pred -----HHhhCC--cEEEEEcccccCChHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 001111 25555556665554556666666666666889999987755
No 287
>PRK09165 replicative DNA helicase; Provisional
Probab=91.29 E-value=1.3 Score=51.20 Aligned_cols=116 Identities=14% Similarity=0.087 Sum_probs=55.4
Q ss_pred cEEEEcCCCchHHHHHHHHH--H--c--------------CCCeEEEEcCcHHHHHHHHHHHHH--cCCceeeec-ccch
Q 004900 55 DCFCLMPTGGGKSMCYQIPA--L--A--------------KPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQT 113 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa--l--~--------------~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l~-s~~~ 113 (724)
=+++.|+||+|||...+--+ + . .+..+++++.--.- .|.+.++-. .+++..-+. +...
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~-~ql~~R~la~~s~v~~~~i~~~~l~ 297 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA-EQLATRILSEQSEISSSKIRRGKIS 297 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH-HHHHHHHHHHhcCCCHHHHhcCCCC
Confidence 36778899999997543211 1 1 14567777644322 344444433 344432222 2223
Q ss_pred HHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 114 ~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
......+........ ...+.+-..--+.-......+.++.....+++||||=.|.|..
T Consensus 298 ~~e~~~l~~a~~~l~-~~~l~I~d~~~~ti~~i~~~ir~l~~~~~~~lvvIDyLqli~~ 355 (497)
T PRK09165 298 EEDFEKLVDASQELQ-KLPLYIDDTPALSISQLRARARRLKRQHGLDLLVVDYLQLIRG 355 (497)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhccC
Confidence 333333333222111 1334333221222222333334444445689999999998864
No 288
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=91.29 E-value=1.9 Score=48.74 Aligned_cols=146 Identities=18% Similarity=0.116 Sum_probs=65.0
Q ss_pred CCcEEEEcCCCchHHHHHHHHH----HcCCCeEEEEcCcHHHHHHHHHHHHH--cCCceeeecc-cchHHHHHHHHhhhh
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS-TQTMQVKTKIYEDLD 125 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpa----l~~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l~s-~~~~~~~~~i~~~l~ 125 (724)
|.=+++.|++|+|||...+--+ +..+..+++++.-- -..+.+.++-. .|+....+.. .........+.....
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm-~~~~l~~Rl~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 272 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEM-SAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVD 272 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC-CHHHHHHHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 3446778899999997543222 23466788887321 11233333222 3443322211 222222222211111
Q ss_pred cCCCCccEEEeCcccccChhHHHHHHhhhhc-CCccEEEEccccccccCCCCChHHHHHHHHHHhhC------CCCCEEE
Q 004900 126 SGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPILA 198 (724)
Q Consensus 126 ~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~-~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~------p~~pil~ 198 (724)
... ...+.+.....+.-........+.... +.+++||||=.+.+..-. ....+..++.+.+.+ -++|+++
T Consensus 273 ~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~--~~~~~~~~~~i~~~Lk~lAke~~i~Vi~ 349 (421)
T TIGR03600 273 RLS-EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTR--GRDRNEELGGISRGLKALAKELDVPVVL 349 (421)
T ss_pred HHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCC--CCCHHHHHHHHHHHHHHHHHHhCCcEEE
Confidence 111 123333222222222233333333322 258999999988886411 112223333222211 2788888
Q ss_pred Eeec
Q 004900 199 LTAT 202 (724)
Q Consensus 199 LSAT 202 (724)
+|-.
T Consensus 350 lsQl 353 (421)
T TIGR03600 350 LAQL 353 (421)
T ss_pred eccc
Confidence 8764
No 289
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.26 E-value=0.83 Score=46.93 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=12.6
Q ss_pred cEEEEcCCCchHHH
Q 004900 55 DCFCLMPTGGGKSM 68 (724)
Q Consensus 55 dvlv~apTGsGKTl 68 (724)
-+++.+|+|+|||-
T Consensus 36 ~l~l~G~~G~GKTH 49 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH 49 (219)
T ss_dssp EEEEEESTTSSHHH
T ss_pred ceEEECCCCCCHHH
Confidence 37999999999996
No 290
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.26 E-value=1.7 Score=51.63 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=29.2
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHH
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di 211 (724)
.+...++||||+|.|+.-. ...|-+.....|+.-+++|..|-...+...|
T Consensus 117 ~g~~KV~IIDEah~Ls~~a------~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI 166 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHS------FNALLKTLEEPPEHVKFLLATTDPQKLPVTI 166 (647)
T ss_pred cCCCEEEEEechHhCCHHH------HHHHHHHHHcCCCCeEEEEecCCccccchHH
Confidence 4567899999999997522 3445455555444334445555444444333
No 291
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.24 E-value=1.3 Score=49.19 Aligned_cols=19 Identities=16% Similarity=0.111 Sum_probs=15.2
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lp 73 (724)
-+++.+|.|+|||.....-
T Consensus 40 ~~L~~Gp~G~GKTtla~~l 58 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARLL 58 (363)
T ss_pred EEEEecCCCCCHHHHHHHH
Confidence 3589999999999865543
No 292
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.21 E-value=1.4 Score=52.33 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=16.0
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp 73 (724)
..+|+.+|.|+|||....+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred ceEEEECCCCCChHHHHHHH
Confidence 45799999999999865543
No 293
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.15 E-value=1.5 Score=50.86 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=16.9
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa 74 (724)
+.+++.+|.|+|||.++.+-+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 368999999999998765544
No 294
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=91.13 E-value=4.4 Score=45.05 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
..+++.+|+|+|||.+..
T Consensus 56 ~~~lI~G~~GtGKT~l~~ 73 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVK 73 (394)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999998643
No 295
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.00 E-value=8.9 Score=39.45 Aligned_cols=102 Identities=16% Similarity=0.088 Sum_probs=55.2
Q ss_pred CCcEEEEcCCCchHHHHH-HH--HHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCC
Q 004900 53 GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~-~l--pal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~ 129 (724)
|.-+++.+++|+|||... ++ -.+.++..+++++=-... .+.++.+.++|+...-. +..+
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~-~~~~~~~~~~g~~~~~~---------------~~~g-- 86 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTS-KSYLKQMESVKIDISDF---------------FLWG-- 86 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCH-HHHHHHHHHCCCChhHH---------------HhCC--
Confidence 456788999999999643 33 234467778777754333 45666677776542110 0011
Q ss_pred CccEEEeCcccccC-----hhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 130 SLRLLYVTPELTAT-----PGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 130 ~~~il~~TPE~i~T-----~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
...++-..++.+.. ...+..+.........+++||||..-+..
T Consensus 87 ~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~ 134 (234)
T PRK06067 87 YLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFAT 134 (234)
T ss_pred CceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHh
Confidence 12222222222211 22334444444444678999999986543
No 296
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=90.98 E-value=0.56 Score=56.22 Aligned_cols=82 Identities=23% Similarity=0.255 Sum_probs=66.1
Q ss_pred HHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC-CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCC
Q 004900 247 ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK 325 (724)
Q Consensus 247 ~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~-gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip 325 (724)
+.+.+.|.+ +..+||.++.+..+.++...|+.+ |.++..+|+++++.+|.....+..+|+.+|+|.|-.+-. .-++
T Consensus 236 ~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-~Pf~ 312 (730)
T COG1198 236 EAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-LPFK 312 (730)
T ss_pred HHHHHHHHc--CCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-Cchh
Confidence 334444443 468999999999999999999876 889999999999999999999999999999999865322 3345
Q ss_pred CcceEE
Q 004900 326 DVRLVC 331 (724)
Q Consensus 326 ~V~~VI 331 (724)
+..+||
T Consensus 313 ~LGLII 318 (730)
T COG1198 313 NLGLII 318 (730)
T ss_pred hccEEE
Confidence 666666
No 297
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=90.97 E-value=1.3 Score=45.29 Aligned_cols=100 Identities=26% Similarity=0.249 Sum_probs=55.5
Q ss_pred CCcEEEEcCCCchHHHH-HH--HHHHcC-CCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCC
Q 004900 53 GRDCFCLMPTGGGKSMC-YQ--IPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~-~~--lpal~~-~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~ 128 (724)
|.-+++.+|+|+|||.. ++ .-.+.+ +..+++++-. +-..+..+.+..+|+...- ....+
T Consensus 19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e-e~~~~l~~~~~s~g~d~~~---------------~~~~g- 81 (226)
T PF06745_consen 19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE-EPPEELIENMKSFGWDLEE---------------YEDSG- 81 (226)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS-S-HHHHHHHHHTTTS-HHH---------------HHHTT-
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec-CCHHHHHHHHHHcCCcHHH---------------HhhcC-
Confidence 45788999999999964 33 344566 7788888743 3335666677777653211 01111
Q ss_pred CCccEEEeCccccc----C-hhHHHHHHhhhhcCCccEEEEcccccc
Q 004900 129 PSLRLLYVTPELTA----T-PGFMSKLKKIHSRGLLNLVAIDEAHCI 170 (724)
Q Consensus 129 ~~~~il~~TPE~i~----T-~~~l~~L~~~~~~~~l~lIVIDEAH~l 170 (724)
.+.++-..++... . ..+...+.........+++|||-..-+
T Consensus 82 -~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 82 -KLKIIDAFPERIGWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -SEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred -CEEEEecccccccccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1344444444331 1 223444444433334589999998888
No 298
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=90.92 E-value=1.1 Score=50.47 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (724)
.+++.+|+|+|||....
T Consensus 138 ~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred eEEEECCCCCcHHHHHH
Confidence 57899999999997543
No 299
>PRK08760 replicative DNA helicase; Provisional
Probab=90.87 E-value=1.1 Score=51.56 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=67.3
Q ss_pred cEEEEcCCCchHHHHHHHHH----HcCCCeEEEEcCcHHHHHHHHHHHHHc--CCceeeec-ccchHHHHHHHHhhhhcC
Q 004900 55 DCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKEK--GIAGEFLS-STQTMQVKTKIYEDLDSG 127 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa----l~~~~~vLVlsPl~aL~~qqv~~l~~~--gi~~~~l~-s~~~~~~~~~i~~~l~~~ 127 (724)
=+++.|.+|.|||...+--+ ...+..+++++.--.- .|.+.++... ++....+. +.....+...+.......
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~-~ql~~Rl~a~~s~i~~~~i~~g~l~~~e~~~~~~a~~~l 309 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA-SQLAMRLISSNGRINAQRLRTGALEDEDWARVTGAIKML 309 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH-HHHHHHHHHhhCCCcHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 35667899999997544222 2235567777644322 3444454442 23322222 222222222222222111
Q ss_pred CCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCC-CChHH-H----HHHHHHHhhCCCCCEEEEee
Q 004900 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH-DFRPS-Y----RKLSSLRNYLPDVPILALTA 201 (724)
Q Consensus 128 ~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~-dFrp~-y----~~L~~l~~~~p~~pil~LSA 201 (724)
. ...+++....-+.-......+..+.....+++||||=.+.|..-+. +-|.. + +.|..+...+ ++|++++|-
T Consensus 310 ~-~~~l~I~d~~~~t~~~I~~~~r~l~~~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel-~ipVi~lsQ 387 (476)
T PRK08760 310 K-ETKIFIDDTPGVSPEVLRSKCRRLKREHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL-NVPVIALSQ 387 (476)
T ss_pred h-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh-CCEEEEeec
Confidence 1 2344443322232233334444444445689999999988853332 11211 1 2222222222 778888774
No 300
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=90.78 E-value=1 Score=47.50 Aligned_cols=51 Identities=20% Similarity=0.104 Sum_probs=30.8
Q ss_pred CCcEEEEcCCCchHHH-HHHHH--HHcCCCeEEEEc---CcHHHHHHHHHHHHHcCC
Q 004900 53 GRDCFCLMPTGGGKSM-CYQIP--ALAKPGIVLVVS---PLIALMENQVIGLKEKGI 103 (724)
Q Consensus 53 g~dvlv~apTGsGKTl-~~~lp--al~~~~~vLVls---Pl~aL~~qqv~~l~~~gi 103 (724)
|.-+++.+++|+|||. |.++. .+..+..+++++ |...+..+.......+|.
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~ 92 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGV 92 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCC
Confidence 4567899999999996 33332 234567888887 333333333334444444
No 301
>PRK05748 replicative DNA helicase; Provisional
Probab=90.76 E-value=1.5 Score=50.07 Aligned_cols=148 Identities=17% Similarity=0.132 Sum_probs=65.7
Q ss_pred CcEEEEcCCCchHHHHHH-HH---HHcCCCeEEEEcCcHHHHHHHHHHHH-H-cCCceeee-cccchHHHHHHHHhhhhc
Q 004900 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLK-E-KGIAGEFL-SSTQTMQVKTKIYEDLDS 126 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp---al~~~~~vLVlsPl~aL~~qqv~~l~-~-~gi~~~~l-~s~~~~~~~~~i~~~l~~ 126 (724)
.-+++.|+||+|||...+ +. +...+..+++++.--. ..+.+.++- . .++....+ .+.........+......
T Consensus 204 ~livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms-~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~~~ 282 (448)
T PRK05748 204 DLIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG-AESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAMGS 282 (448)
T ss_pred ceEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCC-HHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHH
Confidence 346778899999997443 21 1223566777763322 233333332 2 12322211 122222222222222111
Q ss_pred CCCCccEEEeCcccccChhHHHHHHhhhhcC-CccEEEEccccccccCCCCChHHHHHHHHHHhhC------CCCCEEEE
Q 004900 127 GKPSLRLLYVTPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPILAL 199 (724)
Q Consensus 127 ~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~-~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~------p~~pil~L 199 (724)
.. +..+.+.-..-+........+.++.... .+++||||=.+.+...+.........++.+.+.+ -++|++++
T Consensus 283 l~-~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~~i~vi~l 361 (448)
T PRK05748 283 LS-DAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKELKVPVIAL 361 (448)
T ss_pred Hh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHhCCeEEEe
Confidence 11 1233332211222223334444443333 6899999999988533221011112232222222 27888888
Q ss_pred eecC
Q 004900 200 TATA 203 (724)
Q Consensus 200 SAT~ 203 (724)
|-.-
T Consensus 362 sQln 365 (448)
T PRK05748 362 SQLS 365 (448)
T ss_pred cccC
Confidence 7753
No 302
>PRK05595 replicative DNA helicase; Provisional
Probab=90.72 E-value=1.2 Score=50.85 Aligned_cols=154 Identities=15% Similarity=0.105 Sum_probs=71.0
Q ss_pred HHHHHHcC----CcEEEEcCCCchHHHHHH-HH---HHcCCCeEEEEcCcHHHHHHHHHHHHH--cCCceeeecc-cchH
Q 004900 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSS-TQTM 114 (724)
Q Consensus 46 aI~ail~g----~dvlv~apTGsGKTl~~~-lp---al~~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l~s-~~~~ 114 (724)
.+..+..| .=+++.|.||.|||...+ +. +...+..+++++.--+- .+.+.++-. .+++...+.. ....
T Consensus 190 ~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~-~~l~~R~~a~~~~v~~~~~~~~~l~~ 268 (444)
T PRK05595 190 ELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSK-EQLAYKLLCSEANVDMLRLRTGNLED 268 (444)
T ss_pred HHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCH-HHHHHHHHHHhcCCCHHHHhcCCCCH
Confidence 34444443 335668899999997543 22 22346678888754221 233333222 3444332222 1222
Q ss_pred HHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhC---
Q 004900 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL--- 191 (724)
Q Consensus 115 ~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~--- 191 (724)
.....+........ ...+.+--+.-+.-......+.++.....+++||||=.|.|..-+. ....+..++.+.+.+
T Consensus 269 ~e~~~~~~~~~~l~-~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~vvIDylql~~~~~~-~~~r~~~v~~is~~LK~l 346 (444)
T PRK05595 269 KDWENIARASGPLA-AAKIFIDDTAGVSVMEMRSKCRRLKIEHGIDMILIDYLQLMSGGKG-SESRQQEVSEISRSIKAL 346 (444)
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEeHHHhccCCCC-CccHHHHHHHHHHHHHHH
Confidence 22222222221111 1233332221222223333444444445599999999999864321 111222233222211
Q ss_pred ---CCCCEEEEeec
Q 004900 192 ---PDVPILALTAT 202 (724)
Q Consensus 192 ---p~~pil~LSAT 202 (724)
-++|++++|-.
T Consensus 347 Ake~~i~vi~lsQL 360 (444)
T PRK05595 347 AKEMECPVIALSQL 360 (444)
T ss_pred HHHhCCeEEEeecc
Confidence 27888888754
No 303
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=90.71 E-value=0.27 Score=58.71 Aligned_cols=56 Identities=25% Similarity=0.247 Sum_probs=45.5
Q ss_pred CcEEEEcCCCchHHHHHHHHHHcC-CCeEEEEcCcHHHHHHHHHHHHHcCCceeeec
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~~-~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~ 109 (724)
.+++++||||+|||..+.+|.+.. .+.+||+=|--++........++.|-.+..++
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~Fn 196 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKFA 196 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEec
Confidence 479999999999999999999875 67888888999998776666666766555444
No 304
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.63 E-value=8.1 Score=42.13 Aligned_cols=57 Identities=16% Similarity=0.194 Sum_probs=30.8
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHh----hCCCCCEEEEeecCChhhHHHHHHh
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN----YLPDVPILALTATAAPKVQKDVMES 214 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~----~~p~~pil~LSAT~~~~v~~di~~~ 214 (724)
...++||||=+-++..-. .....+..+..+.. ..|.-.++.++||........+...
T Consensus 195 ~~~D~ViIDTaGr~~~~~-~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f 255 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKT-NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAF 255 (318)
T ss_pred CCCCEEEEeCCCCCcCCH-HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHH
Confidence 447899999887754211 01122233322221 1234457999999776655544433
No 305
>PRK08840 replicative DNA helicase; Provisional
Probab=90.63 E-value=2.5 Score=48.49 Aligned_cols=145 Identities=12% Similarity=0.125 Sum_probs=63.9
Q ss_pred CcEEEEcCCCchHHHHHHH----HHHcCCCeEEEEcCcHHHHHHHHHHHHH--cCCceeee-cccchHHHHHHHHhhhhc
Q 004900 54 RDCFCLMPTGGGKSMCYQI----PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQVKTKIYEDLDS 126 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l----pal~~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l-~s~~~~~~~~~i~~~l~~ 126 (724)
.=+++.|.||.|||...+- .+...+..+++++.--. ..|.+.++-. .++...-+ .+..+..+...+......
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~ 296 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP-AEQLMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGI 296 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3456678999999975431 12234567778874422 2333333322 23332212 222333333333222111
Q ss_pred CCCCccEEE-eCcccccChhHHHHHHhhhhc-CCccEEEEccccccccCCCCChHHHHHHHHHHhhC------CCCCEEE
Q 004900 127 GKPSLRLLY-VTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPILA 198 (724)
Q Consensus 127 ~~~~~~il~-~TPE~i~T~~~l~~L~~~~~~-~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~------p~~pil~ 198 (724)
......+.+ -+|. +.-........++... +.+++||||=.|.+..-+.. ......++.+-+.+ -++|+++
T Consensus 297 l~~~~~l~I~d~~~-~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~~~~~~-~~r~~ei~~isr~LK~lAkel~ipVi~ 374 (464)
T PRK08840 297 LMEKKNMYIDDSSG-LTPTEVRSRARRIAREHGGLSMIMVDYLQLMRVPALS-DNRTLEIAEISRSLKALAKELNVPVVA 374 (464)
T ss_pred HHhcCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCCEEEEccHHhcCCCCCC-CchHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 100122222 1222 1111222233333222 35899999999988543321 11112232222211 2788888
Q ss_pred Eee
Q 004900 199 LTA 201 (724)
Q Consensus 199 LSA 201 (724)
+|-
T Consensus 375 LsQ 377 (464)
T PRK08840 375 LSQ 377 (464)
T ss_pred EEe
Confidence 873
No 306
>PRK09183 transposase/IS protein; Provisional
Probab=90.51 E-value=2.2 Score=45.06 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=26.0
Q ss_pred HHcCCcEEEEcCCCchHHHHHHHH---HHcCCCeEEEEcCcHHHHH
Q 004900 50 VLSGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALME 92 (724)
Q Consensus 50 il~g~dvlv~apTGsGKTl~~~lp---al~~~~~vLVlsPl~aL~~ 92 (724)
+..|.++++.+|+|+|||...... +...+..++++ +...|+.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~ 143 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLL 143 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHH
Confidence 446788999999999999644332 22344455544 3344443
No 307
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.43 E-value=1.8 Score=51.42 Aligned_cols=45 Identities=22% Similarity=0.338 Sum_probs=26.4
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhh
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v 207 (724)
++..++||||+|.++.-+ ...|.+.....|+.-.+.|++|-...+
T Consensus 117 gk~KV~IIDEVh~LS~~A------~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHS------FNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred CCcEEEEEechHhcCHHH------HHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 457899999999987522 234444455444433455555544443
No 308
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.39 E-value=5.6 Score=45.02 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=31.9
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhc
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~ 216 (724)
..++++||.+-+. +.-......+..+.... +...+++++||.......++...+.
T Consensus 269 ~~d~VLIDTaGrs----qrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~ 324 (420)
T PRK14721 269 GKHMVLIDTVGMS----QRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQ 324 (420)
T ss_pred CCCEEEecCCCCC----cchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhc
Confidence 3678899985221 10011223344443322 2345789999998888887776654
No 309
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=2.8 Score=44.77 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=65.9
Q ss_pred HHHHcCC-----cEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHh
Q 004900 48 QAVLSGR-----DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122 (724)
Q Consensus 48 ~ail~g~-----dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~ 122 (724)
+.+..|+ -+++.+|+|+|||..+-..+-..+ .+.+-+.+..||.-|+-+-.+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGESEk---------------------- 212 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEK---------------------- 212 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccHHH----------------------
Confidence 4455664 488999999999964433333333 666666666776554422111
Q ss_pred hhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCCh-HHHHHHH-HHHhhCC-----CCC
Q 004900 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR-PSYRKLS-SLRNYLP-----DVP 195 (724)
Q Consensus 123 ~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFr-p~y~~L~-~l~~~~p-----~~p 195 (724)
....|..+.....-+.|.|||+|.+..-+.+-. ..-++|. +++-+.. +--
T Consensus 213 -----------------------LVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~g 269 (439)
T KOG0739|consen 213 -----------------------LVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDG 269 (439)
T ss_pred -----------------------HHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCc
Confidence 111222333344578899999997754322211 1112221 1221111 345
Q ss_pred EEEEeecCChhhHHHHHH
Q 004900 196 ILALTATAAPKVQKDVME 213 (724)
Q Consensus 196 il~LSAT~~~~v~~di~~ 213 (724)
++.|-||-.|-+++..++
T Consensus 270 vLVLgATNiPw~LDsAIR 287 (439)
T KOG0739|consen 270 VLVLGATNIPWVLDSAIR 287 (439)
T ss_pred eEEEecCCCchhHHHHHH
Confidence 899999988877765444
No 310
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.35 E-value=5.2 Score=41.43 Aligned_cols=51 Identities=18% Similarity=0.113 Sum_probs=32.8
Q ss_pred cCCcEEEEcCCCchHHHH-HHHH--HHcCCCeEEEEcCcHHHHHHHHHHHHHcCC
Q 004900 52 SGRDCFCLMPTGGGKSMC-YQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~-~~lp--al~~~~~vLVlsPl~aL~~qqv~~l~~~gi 103 (724)
.|.-+++.+++|+|||.. .++. .+..+..+++++.... ..+..+.+.++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~-~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT-TTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC-HHHHHHHHHHhCC
Confidence 466789999999999976 3332 2345667888874432 2455555555554
No 311
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.25 E-value=1.4 Score=44.82 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (724)
.+..+++.+|+|+|||....
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 34679999999999997543
No 312
>PHA02542 41 41 helicase; Provisional
Probab=90.25 E-value=2.3 Score=48.88 Aligned_cols=42 Identities=26% Similarity=0.266 Sum_probs=25.7
Q ss_pred HHHHHHHH-cC---Cc-EEEEcCCCchHHHHHHHHH---HcCCCeEEEEc
Q 004900 44 LDAIQAVL-SG---RD-CFCLMPTGGGKSMCYQIPA---LAKPGIVLVVS 85 (724)
Q Consensus 44 ~eaI~ail-~g---~d-vlv~apTGsGKTl~~~lpa---l~~~~~vLVls 85 (724)
...+..++ .| .+ +++.|++|.|||...+--+ ...+..|++++
T Consensus 176 ~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a~~g~~Vl~fS 225 (473)
T PHA02542 176 LEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYLQQGYNVLYIS 225 (473)
T ss_pred cHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHHhcCCcEEEEe
Confidence 34455566 33 23 5667899999997654222 23456777776
No 313
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=4.6 Score=44.92 Aligned_cols=18 Identities=28% Similarity=0.434 Sum_probs=15.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
.++++.+|||+|||.+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~ 60 (366)
T COG1474 43 SNIIIYGPTGTGKTATVK 60 (366)
T ss_pred ccEEEECCCCCCHhHHHH
Confidence 369999999999998743
No 314
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.19 E-value=1.5 Score=48.03 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=28.5
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHc-C--CcEEEEcCCCchHHHHHHHHHH
Q 004900 28 KLLRWHFGHAQFRDKQLDAIQAVLS-G--RDCFCLMPTGGGKSMCYQIPAL 75 (724)
Q Consensus 28 ~~L~~~fG~~~lr~~Q~eaI~ail~-g--~dvlv~apTGsGKTl~~~lpal 75 (724)
+.|.+++|-+++- .|.-.+..+++ + ..+|+++|.|+|||..+-+.+.
T Consensus 135 ktL~dyvGQ~hlv-~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 135 KTLDDYVGQSHLV-GQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred chHHHhcchhhhc-CcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHh
Confidence 3455555544332 23334444443 3 3789999999999986655444
No 315
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.16 E-value=6.1 Score=44.97 Aligned_cols=47 Identities=15% Similarity=0.246 Sum_probs=27.9
Q ss_pred ccEEEEccccccccCCCCChHHHHHHHHHHhh-CCCCCEEEEeecCChhhHH
Q 004900 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQK 209 (724)
Q Consensus 159 l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~-~p~~pil~LSAT~~~~v~~ 209 (724)
.++||||.+-+.... ......|..+... .|+.-++.+.||.......
T Consensus 176 ~DvVIIDTAGr~~~d----~~lm~El~~l~~~~~pdevlLVvda~~gq~av~ 223 (437)
T PRK00771 176 ADVIIVDTAGRHALE----EDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKN 223 (437)
T ss_pred CCEEEEECCCcccch----HHHHHHHHHHHHHhcccceeEEEeccccHHHHH
Confidence 389999999654321 1222334444433 3566688888888765444
No 316
>PRK06904 replicative DNA helicase; Validated
Probab=90.03 E-value=4.4 Score=46.67 Aligned_cols=145 Identities=19% Similarity=0.174 Sum_probs=64.1
Q ss_pred CcEEEEcCCCchHHHHHHHH----HHcCCCeEEEEcCcHHHHHHHHHHHHH--cCCceeeec-c-cchHHHHHHHHhhhh
Q 004900 54 RDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-S-TQTMQVKTKIYEDLD 125 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp----al~~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l~-s-~~~~~~~~~i~~~l~ 125 (724)
.=+++.|.||.|||...+-- +...+..+++++.--+ ..|.+.++-. .++...-+. + .....+...+.....
T Consensus 222 ~LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs-~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a~~ 300 (472)
T PRK06904 222 DLIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP-AEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISSTVG 300 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC-HHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHHHH
Confidence 33566789999999754311 2224567777774422 2333434332 233332222 2 233333333322221
Q ss_pred cCCCCccEEEe-CcccccChhHHHHHHhhhhc-CCccEEEEccccccccCCC-CChH-HHHHH----HHHHhhCCCCCEE
Q 004900 126 SGKPSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRP-SYRKL----SSLRNYLPDVPIL 197 (724)
Q Consensus 126 ~~~~~~~il~~-TPE~i~T~~~l~~L~~~~~~-~~l~lIVIDEAH~l~~~G~-dFrp-~y~~L----~~l~~~~p~~pil 197 (724)
.......+.+. +|. +..........+.... +.+++||||=.+.+..-+. +-|. .+..+ ..+... -++|++
T Consensus 301 ~l~~~~~l~I~d~~~-~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAke-l~ipVi 378 (472)
T PRK06904 301 MFKQKPNLYIDDSSG-LTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAKE-LKVPVV 378 (472)
T ss_pred HHhcCCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHHH-hCCeEE
Confidence 11111222221 222 1112222233333222 3589999999998864332 1121 12222 222222 278888
Q ss_pred EEee
Q 004900 198 ALTA 201 (724)
Q Consensus 198 ~LSA 201 (724)
++|-
T Consensus 379 ~lsQ 382 (472)
T PRK06904 379 ALSQ 382 (472)
T ss_pred EEEe
Confidence 8874
No 317
>PRK05642 DNA replication initiation factor; Validated
Probab=89.99 E-value=1.6 Score=45.25 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=13.5
Q ss_pred CcEEEEcCCCchHHHH
Q 004900 54 RDCFCLMPTGGGKSMC 69 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~ 69 (724)
..+++.+|+|+|||-.
T Consensus 46 ~~l~l~G~~G~GKTHL 61 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL 61 (234)
T ss_pred CeEEEECCCCCCHHHH
Confidence 4578999999999964
No 318
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.93 E-value=2.2 Score=50.21 Aligned_cols=49 Identities=20% Similarity=0.343 Sum_probs=29.0
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHH
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di 211 (724)
+...++||||+|.+..- .+..|.......|..-++.|..|-...+...|
T Consensus 117 ~~~KVvIIDEah~Lt~~------A~NALLK~LEEpp~~~~fIL~tte~~kll~TI 165 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTA------GFNALLKIVEEPPEHLIFIFATTEPEKVLPTI 165 (584)
T ss_pred CCceEEEEECCCcCCHH------HHHHHHHHHhcCCCCeEEEEEeCChHhhHHHH
Confidence 45789999999999753 23445455555554434444445555444444
No 319
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=89.92 E-value=2.6 Score=50.32 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=16.2
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa 74 (724)
.+|+.+|.|+|||.+..+.+
T Consensus 40 a~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 57999999999998765443
No 320
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=89.91 E-value=2.6 Score=49.62 Aligned_cols=45 Identities=22% Similarity=0.290 Sum_probs=27.1
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhH
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~ 208 (724)
...++||||||.+..- ....|.......|...++.|.+|-...+.
T Consensus 119 ~~KVIIIDEad~Lt~~------A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 119 KYKVYIIDEAHMLSTS------AWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred CcEEEEEechHhCCHH------HHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 3578999999998642 23445555555555555556555444443
No 321
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=89.82 E-value=0.35 Score=50.22 Aligned_cols=51 Identities=16% Similarity=0.004 Sum_probs=34.7
Q ss_pred CCcEEEEcCCCchHHHH-HHH--HHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCc
Q 004900 53 GRDCFCLMPTGGGKSMC-YQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~-~~l--pal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~ 104 (724)
|.-+++.+|+|+|||.. .++ -.+.++..+++++- -+-..+..+.+..+|..
T Consensus 21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~-ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVAL-EEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEe-eCCHHHHHHHHHHhCCC
Confidence 46788999999999974 333 33456778888883 34445666667776654
No 322
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=89.78 E-value=0.36 Score=57.41 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=46.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHcC-CCeEEEEcCcHHHHHHHHHHHHHcCCceeeecc
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS 110 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~~-~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s 110 (724)
.++++.||||+|||..+.+|.+.. ++.+||+=|--++..-.....++.|-++.++.-
T Consensus 225 ~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vfdP 282 (641)
T PRK13822 225 THGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVLDP 282 (641)
T ss_pred ceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEEeC
Confidence 478999999999999999999876 678888889999887766666667766665543
No 323
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=89.68 E-value=2.5 Score=47.05 Aligned_cols=56 Identities=29% Similarity=0.248 Sum_probs=32.9
Q ss_pred HHHHHHcC-----CcEEEEcCCCchHHHHHH-HHH-H-cCCCeEEEEcCcHHHHHHHHHHHHHcC
Q 004900 46 AIQAVLSG-----RDCFCLMPTGGGKSMCYQ-IPA-L-AKPGIVLVVSPLIALMENQVIGLKEKG 102 (724)
Q Consensus 46 aI~ail~g-----~dvlv~apTGsGKTl~~~-lpa-l-~~~~~vLVlsPl~aL~~qqv~~l~~~g 102 (724)
-+..++.| .-+++.+++|+|||...+ +.. + ..++.+++++-.-+. .|......++|
T Consensus 70 eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~-~qi~~Ra~rlg 133 (372)
T cd01121 70 ELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESP-EQIKLRADRLG 133 (372)
T ss_pred HHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCH-HHHHHHHHHcC
Confidence 35556643 457889999999997433 322 2 234678888754332 34334444444
No 324
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=89.61 E-value=3.3 Score=49.06 Aligned_cols=20 Identities=25% Similarity=0.154 Sum_probs=16.5
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa 74 (724)
.+|+.+|.|.|||....+.+
T Consensus 48 a~L~~Gp~GvGKTt~Ar~lA 67 (598)
T PRK09111 48 AFMLTGVRGVGKTTTARILA 67 (598)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 58999999999998765544
No 325
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=89.58 E-value=0.72 Score=57.15 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=64.8
Q ss_pred CceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc-ccccCCCCcceEEe
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-GMGIDRKDVRLVCH 332 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~-g~GIDip~V~~VI~ 332 (724)
+.+++|.++|+.-|.+.+..+++. ++.+..++++.+..++..+++.+.+|+++|||+|..+ ...+.+.++.+||.
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEe
Confidence 467999999999999999887763 6778889999999999999999999999999999854 44577888998884
Q ss_pred e
Q 004900 333 F 333 (724)
Q Consensus 333 ~ 333 (724)
-
T Consensus 580 D 580 (926)
T TIGR00580 580 D 580 (926)
T ss_pred e
Confidence 3
No 326
>CHL00176 ftsH cell division protein; Validated
Probab=89.22 E-value=4 Score=48.75 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa 74 (724)
+.+++.+|+|+|||+....-+
T Consensus 217 ~gVLL~GPpGTGKT~LAralA 237 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIA 237 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999998654433
No 327
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=89.08 E-value=2.6 Score=49.66 Aligned_cols=41 Identities=15% Similarity=0.123 Sum_probs=23.1
Q ss_pred cEEEEcCCCchHHHHHHHHH--Hc--CCCeEEEEcCcHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA--LA--KPGIVLVVSPLIALMENQV 95 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa--l~--~~~~vLVlsPl~aL~~qqv 95 (724)
.+++.+++|+|||......+ +. ..+..++.++...++.+.+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~ 360 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFI 360 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH
Confidence 48899999999996432211 11 1233444445555555433
No 328
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.08 E-value=2.7 Score=48.03 Aligned_cols=57 Identities=28% Similarity=0.247 Sum_probs=34.3
Q ss_pred HHHHHHcC-----CcEEEEcCCCchHHHH-HHHHHH--cCCCeEEEEcCcHHHHHHHHHHHHHcCC
Q 004900 46 AIQAVLSG-----RDCFCLMPTGGGKSMC-YQIPAL--AKPGIVLVVSPLIALMENQVIGLKEKGI 103 (724)
Q Consensus 46 aI~ail~g-----~dvlv~apTGsGKTl~-~~lpal--~~~~~vLVlsPl~aL~~qqv~~l~~~gi 103 (724)
-++.++.| .-+++.+++|+|||.. .++... ..+..+++++-.-. ..|......++|+
T Consensus 68 ~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees-~~qi~~ra~rlg~ 132 (446)
T PRK11823 68 ELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEES-ASQIKLRAERLGL 132 (446)
T ss_pred HHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcccc-HHHHHHHHHHcCC
Confidence 35556643 4578899999999964 333222 24678888885433 2444444555554
No 329
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.06 E-value=1.6 Score=52.35 Aligned_cols=46 Identities=24% Similarity=0.319 Sum_probs=26.0
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhh
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v 207 (724)
.+...++||||||.+..- ....|.......|..-++.|.+|-...+
T Consensus 116 ~g~~KV~IIDEa~~LT~~------A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 116 QSKYKIYIIDEVHMLSKS------AFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred cCCCEEEEEEChhhCCHH------HHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 345789999999998742 2334444444444433444544533333
No 330
>PRK05636 replicative DNA helicase; Provisional
Probab=89.03 E-value=2.9 Score=48.51 Aligned_cols=113 Identities=12% Similarity=0.101 Sum_probs=52.2
Q ss_pred EEEEcCCCchHHHHHH-HH---HHcCCCeEEEEc---CcHHHHHHHHHHHHHcCCceeeec-ccchHHHHHHHHhhhhcC
Q 004900 56 CFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQTMQVKTKIYEDLDSG 127 (724)
Q Consensus 56 vlv~apTGsGKTl~~~-lp---al~~~~~vLVls---Pl~aL~~qqv~~l~~~gi~~~~l~-s~~~~~~~~~i~~~l~~~ 127 (724)
+++.|.||.|||...+ +. ++..+..+++++ +...|+...+... .++....+. +..+......+...+...
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~~ql~~R~ls~~--s~v~~~~i~~g~l~~~e~~~~~~a~~~l 345 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSKSEIVMRLLSAE--AEVRLSDMRGGKMDEDAWEKLVQRLGKI 345 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCHHHHHHHHHHHh--cCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 4668899999996433 22 223455677775 3333443322211 223322221 222333333333222211
Q ss_pred CCCccEEEe-CcccccChhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 128 KPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 128 ~~~~~il~~-TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
. +..+.+- +|. +.-........++.....+++||||=.|.|..
T Consensus 346 ~-~~~l~I~d~~~-~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~~ 389 (505)
T PRK05636 346 A-QAPIFIDDSAN-LTMMEIRSKARRLKQKHDLKLIVVDYLQLMSS 389 (505)
T ss_pred h-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCC
Confidence 1 1233322 221 11112333333333445589999999999863
No 331
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=88.95 E-value=3.5 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpa 74 (724)
.+.+++.+|+|+|||+..-..+
T Consensus 179 pkgvLL~GppGTGKT~LAkalA 200 (398)
T PTZ00454 179 PRGVLLYGPPGTGKTMLAKAVA 200 (398)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999654433
No 332
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=88.94 E-value=1.2 Score=52.30 Aligned_cols=63 Identities=16% Similarity=0.089 Sum_probs=48.8
Q ss_pred CCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHHHHHH----cCCCeEEEEcCcHHHHHHHH-HHHHH
Q 004900 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQV-IGLKE 100 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~lpal----~~~~~vLVlsPl~aL~~qqv-~~l~~ 100 (724)
..+|+|.+.+.++... +.+.+..++-+|||.+.+..+. ..+..+|++.||..++.+.+ .+|..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 5679999999998754 5788899999999996544332 35788999999999999877 33433
No 333
>PRK08006 replicative DNA helicase; Provisional
Probab=88.92 E-value=4 Score=46.94 Aligned_cols=143 Identities=17% Similarity=0.144 Sum_probs=63.2
Q ss_pred cEEEEcCCCchHHHHHHHH----HHcCCCeEEEEcCcHHHHHHHHHHHHH--cCCceeeec-ccchHHHHHHHHhhhhcC
Q 004900 55 DCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDLDSG 127 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lp----al~~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l~-s~~~~~~~~~i~~~l~~~ 127 (724)
=+++.|.+|.|||...+-- +...+..++|++.--.- .|.+.++-. .++...-+. +..+......+.......
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~-~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~~~~ 304 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPG-EQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTMGIL 304 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCH-HHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHHHHH
Confidence 3566779999999754322 22345667777644221 233333322 233322222 223333333333222111
Q ss_pred CCCccEEEeCcccccCh-hHHHHHHhhhhc-CCccEEEEccccccccCCC-CChHHHHHHHHHHhhC------CCCCEEE
Q 004900 128 KPSLRLLYVTPELTATP-GFMSKLKKIHSR-GLLNLVAIDEAHCISSWGH-DFRPSYRKLSSLRNYL------PDVPILA 198 (724)
Q Consensus 128 ~~~~~il~~TPE~i~T~-~~l~~L~~~~~~-~~l~lIVIDEAH~l~~~G~-dFrp~y~~L~~l~~~~------p~~pil~ 198 (724)
.....+.+ .+.--.|. .......+.... +.+++||||=.|.+..-+. +-|. ..++.+-+.+ -++|+++
T Consensus 305 ~~~~~l~I-~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~--~ei~~isr~LK~lAkel~ipVi~ 381 (471)
T PRK08006 305 LEKRNMYI-DDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRT--LEIAEISRSLKALAKELQVPVVA 381 (471)
T ss_pred HhcCCEEE-ECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcH--HHHHHHHHHHHHHHHHhCCeEEE
Confidence 01122222 22111122 222233333322 3589999999998854221 1222 2232222211 2788888
Q ss_pred Eee
Q 004900 199 LTA 201 (724)
Q Consensus 199 LSA 201 (724)
+|-
T Consensus 382 LsQ 384 (471)
T PRK08006 382 LSQ 384 (471)
T ss_pred EEe
Confidence 884
No 334
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=88.92 E-value=4.3 Score=43.85 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.2
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
.+++.+|+|+|||.....
T Consensus 38 ~lll~Gp~GtGKT~la~~ 55 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRA 55 (337)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 689999999999976543
No 335
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.91 E-value=2.8 Score=47.08 Aligned_cols=19 Identities=16% Similarity=0.086 Sum_probs=15.4
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lp 73 (724)
.+|+.+|.|+|||.++.+.
T Consensus 40 a~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eEEEECCCCCCHHHHHHHH
Confidence 4789999999999876543
No 336
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=88.90 E-value=0.48 Score=56.09 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=44.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHcC-CCeEEEEcCcHHHHHHHHHHHHHcC-Cceeeec
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKG-IAGEFLS 109 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~~-~~~vLVlsPl~aL~~qqv~~l~~~g-i~~~~l~ 109 (724)
.++++.||||+|||..+.+|.++. ++.+||+=|--++..-....-++.| -++.++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vfd 269 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVLD 269 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEEe
Confidence 479999999999999999999876 7789999999999776655555555 4555444
No 337
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.84 E-value=2.5 Score=49.27 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=15.7
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa 74 (724)
-.|+.+|.|+|||.+..+-+
T Consensus 40 a~Lf~Gp~G~GKTt~A~~lA 59 (527)
T PRK14969 40 AYLFTGTRGVGKTTLARILA 59 (527)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 35899999999998765543
No 338
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=88.63 E-value=12 Score=39.73 Aligned_cols=49 Identities=22% Similarity=0.177 Sum_probs=28.2
Q ss_pred cEEEEcCCCchHHHHHHHHH--H-cCCCeEEEEc--CcHHHHHHHHHHH-HHcCC
Q 004900 55 DCFCLMPTGGGKSMCYQIPA--L-AKPGIVLVVS--PLIALMENQVIGL-KEKGI 103 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa--l-~~~~~vLVls--Pl~aL~~qqv~~l-~~~gi 103 (724)
-+++++|+|+|||.+..-.+ + ..+.+++++. +.+.-..+|...+ ...++
T Consensus 74 vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i 128 (272)
T TIGR00064 74 VILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGV 128 (272)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCe
Confidence 46678999999997543322 2 2345666665 4455445555443 33443
No 339
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=88.58 E-value=3.2 Score=47.91 Aligned_cols=147 Identities=17% Similarity=0.119 Sum_probs=74.8
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHH--HHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHH
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA--VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~a--il~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~ 91 (724)
...|.+..-.+.....+++...+.-.++.+ ... +-..+-+|+.+|.|+|||+.....+...+...+-+... +|+
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~---~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~ 313 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPEL---FRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELL 313 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHH---HHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHh
Confidence 344444444455555555544433223322 111 11123589999999999998776666444443333322 665
Q ss_pred HHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 92 ~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
..++-+.. .... .+........-..|.|||+|.+.
T Consensus 314 sk~vGese---------------k~ir------------------------------~~F~~A~~~~p~iiFiDEiDs~~ 348 (494)
T COG0464 314 SKWVGESE---------------KNIR------------------------------ELFEKARKLAPSIIFIDEIDSLA 348 (494)
T ss_pred ccccchHH---------------HHHH------------------------------HHHHHHHcCCCcEEEEEchhhhh
Confidence 44322111 1111 11111122335789999999998
Q ss_pred cCCCCChH-H-HHHHHHHHhhCC----CCCEEEEeecCChhhHH
Q 004900 172 SWGHDFRP-S-YRKLSSLRNYLP----DVPILALTATAAPKVQK 209 (724)
Q Consensus 172 ~~G~dFrp-~-y~~L~~l~~~~p----~~pil~LSAT~~~~v~~ 209 (724)
.+..+... . -+.+..++.... ...++++-||-.+...+
T Consensus 349 ~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld 392 (494)
T COG0464 349 SGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLD 392 (494)
T ss_pred ccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccC
Confidence 76543211 1 123444444332 34577788887766544
No 340
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.56 E-value=1.7 Score=47.45 Aligned_cols=53 Identities=13% Similarity=0.054 Sum_probs=33.3
Q ss_pred hcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHH
Q 004900 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (724)
Q Consensus 155 ~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~ 213 (724)
..+...++|||+||.|..-. -..|-+....-|.--++.|+++-+..+...|..
T Consensus 104 ~~g~~KV~iI~~a~~m~~~A------aNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTEAA------ANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred ccCCceEEEEechhhhCHHH------HHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 34668899999999997522 234444555545444666777666665555443
No 341
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.55 E-value=17 Score=42.03 Aligned_cols=55 Identities=20% Similarity=0.161 Sum_probs=29.5
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhc
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC 216 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~ 216 (724)
..++++||.+-+... -......+..+.... |.-.++.|+||.......++...+.
T Consensus 334 d~d~VLIDTaGr~~~----d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~ 389 (484)
T PRK06995 334 NKHIVLIDTIGMSQR----DRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYR 389 (484)
T ss_pred CCCeEEeCCCCcChh----hHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhc
Confidence 357889998543211 011111222222211 3335789999998877776666543
No 342
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=88.44 E-value=3.2 Score=45.71 Aligned_cols=52 Identities=13% Similarity=0.165 Sum_probs=32.5
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHH
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~ 213 (724)
.+...++|||+||.|..-. -..|-+....-|..-++.|+++-+..+...|..
T Consensus 130 ~~~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S 181 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAA------ANALLKTLEEPPPGTVFLLVSARIDRLLPTILS 181 (342)
T ss_pred cCCceEEEEechhhcCHHH------HHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh
Confidence 4557899999999997522 234444455555555666676666665555443
No 343
>PRK08939 primosomal protein DnaI; Reviewed
Probab=88.38 E-value=1.5 Score=47.42 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHH
Q 004900 53 GRDCFCLMPTGGGKSMC 69 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~ 69 (724)
++.+++.+|+|+|||..
T Consensus 156 ~~gl~L~G~~G~GKThL 172 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYL 172 (306)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 45799999999999964
No 344
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=88.35 E-value=8.6 Score=43.60 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=27.8
Q ss_pred EEEEcCCCchHHHHHH-HHHH-c-CCCeEEEEc--CcHHHHHHHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQ-IPAL-A-KPGIVLVVS--PLIALMENQVIGLKE 100 (724)
Q Consensus 56 vlv~apTGsGKTl~~~-lpal-~-~~~~vLVls--Pl~aL~~qqv~~l~~ 100 (724)
+++++++|+|||.+.. +... . ++.++++|+ |.+.-+.+|...+..
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~ 152 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT 152 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh
Confidence 5689999999996543 3222 2 344566655 556666666655443
No 345
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=88.28 E-value=0.91 Score=54.54 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=47.3
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH--HHH-Hc----CCCeEEEEcCcHHHHHHHHHHHHHc
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~--lpa-l~----~~~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
.+++-|.+|+.. ....++|.|+.|+|||.+.. +.- +. .+..+|+|+.|+..+.+..+++...
T Consensus 2 ~Ln~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~ 70 (672)
T PRK10919 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQT 70 (672)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHH
Confidence 378999999876 34679999999999997533 222 22 2457999999999999988888763
No 346
>PRK08506 replicative DNA helicase; Provisional
Probab=88.22 E-value=2.6 Score=48.47 Aligned_cols=144 Identities=19% Similarity=0.167 Sum_probs=65.1
Q ss_pred cEEEEcCCCchHHHHHHHH---HHcCCCeEEEEcCcHHHHHHHHHHHHH--cCCceeeec-ccchHHHHHHHHhhhhcCC
Q 004900 55 DCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDLDSGK 128 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lp---al~~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l~-s~~~~~~~~~i~~~l~~~~ 128 (724)
=+++.|.||.|||...+-- +...+..+++++.-- =..|.+.++-. .+++..-+. +.........+........
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~g~~V~~fSlEM-s~~ql~~Rlla~~s~v~~~~i~~~~l~~~e~~~~~~a~~~l~ 272 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQDKGVAFFSLEM-PAEQLMLRMLSAKTSIPLQNLRTGDLDDDEWERLSDACDELS 272 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhcCCcEEEEeCcC-CHHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 4567889999999754322 223455677776442 22333444432 344332221 2222223222222221111
Q ss_pred CCccEEEe-CcccccChhHHHHHHhhhhc-CCccEEEEccccccccCCCCChHHHHHHHHHHhhC------CCCCEEEEe
Q 004900 129 PSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPILALT 200 (724)
Q Consensus 129 ~~~~il~~-TPE~i~T~~~l~~L~~~~~~-~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~------p~~pil~LS 200 (724)
...+.+- +|. +........+.++... +.+++||||=.+.|..-+. +......+..+-+.+ -++|++++|
T Consensus 273 -~~~l~I~d~~~-~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~~-~~~r~~ev~~isr~LK~lAkel~ipVi~ls 349 (472)
T PRK08506 273 -KKKLFVYDSGY-VNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSGN-FKDRHLQISEISRGLKLLARELDIPIIALS 349 (472)
T ss_pred -cCCeEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCCC-CCCHHHHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 1223322 221 2112233333333322 3589999999998864332 222223333222111 278888887
Q ss_pred ec
Q 004900 201 AT 202 (724)
Q Consensus 201 AT 202 (724)
-.
T Consensus 350 QL 351 (472)
T PRK08506 350 QL 351 (472)
T ss_pred ec
Confidence 43
No 347
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.22 E-value=9.1 Score=42.77 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=28.4
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHh
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMES 214 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~ 214 (724)
...++|+||=+-+... -......|..+.... |+.-++.++||........+...
T Consensus 284 ~~~D~VLIDTAGr~~~----d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~ 338 (407)
T PRK12726 284 NCVDHILIDTVGRNYL----AEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTILPK 338 (407)
T ss_pred CCCCEEEEECCCCCcc----CHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHHHh
Confidence 3478899998765321 122233444444332 23335667777666555445443
No 348
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=88.21 E-value=0.42 Score=47.49 Aligned_cols=116 Identities=20% Similarity=0.211 Sum_probs=49.2
Q ss_pred EEEcCCCchHHHHHHHHH--HcCC--CeEEEEcCcHHHHHHHHHHHHH----cCCceeeecccchHHHHHHHHhhhhcCC
Q 004900 57 FCLMPTGGGKSMCYQIPA--LAKP--GIVLVVSPLIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGK 128 (724)
Q Consensus 57 lv~apTGsGKTl~~~lpa--l~~~--~~vLVlsPl~aL~~qqv~~l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~ 128 (724)
++.|+-|-|||.+.-+.+ +... ..++|.+|..+=++...+.+.. ++.+. ...........+. .
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~-------~~~~~~~~~~~~~--~ 71 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKE-------EKKKRIGQIIKLR--F 71 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhcccccccc-------ccccccccccccc--c
Confidence 578999999998644322 2222 3689999997765543333221 11111 0000000000011 1
Q ss_pred CCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCC
Q 004900 129 PSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (724)
Q Consensus 129 ~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~ 204 (724)
....+.|..|+.+.... ...+++|||||=.+.- ..| .....+.+.++||.|..
T Consensus 72 ~~~~i~f~~Pd~l~~~~-----------~~~DlliVDEAAaIp~---------p~L---~~ll~~~~~vv~stTi~ 124 (177)
T PF05127_consen 72 NKQRIEFVAPDELLAEK-----------PQADLLIVDEAAAIPL---------PLL---KQLLRRFPRVVFSTTIH 124 (177)
T ss_dssp -CCC--B--HHHHCCT---------------SCEEECTGGGS-H---------HHH---HHHHCCSSEEEEEEEBS
T ss_pred ccceEEEECCHHHHhCc-----------CCCCEEEEechhcCCH---------HHH---HHHHhhCCEEEEEeecc
Confidence 13556677776543321 1258999999998752 223 33344667889999854
No 349
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=88.20 E-value=3 Score=48.22 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=16.3
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp 73 (724)
+.+++.+|+|+|||+....-
T Consensus 89 ~giLL~GppGtGKT~la~al 108 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAV 108 (495)
T ss_pred CcEEEECCCCCCHHHHHHHH
Confidence 56999999999999865433
No 350
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=87.98 E-value=3.1 Score=47.14 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=51.5
Q ss_pred CcEEEEcCCCchHHHHHH-HH---HHcCCCeEEEEcCcHHHHHHHHHHHHH--cCCceeeec-ccchHHHHHHHHhhhhc
Q 004900 54 RDCFCLMPTGGGKSMCYQ-IP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDLDS 126 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lp---al~~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l~-s~~~~~~~~~i~~~l~~ 126 (724)
.=+++.|++|+|||...+ +. +...+..+++++.--. ..+.+.++.. .++....+. +.........+......
T Consensus 196 ~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~-~~~i~~R~~~~~~~v~~~~~~~g~l~~~~~~~~~~a~~~ 274 (434)
T TIGR00665 196 DLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMS-AEQLAMRMLSSESRVDSQKLRTGKLSDEDWEKLTSAAGK 274 (434)
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCC-HHHHHHHHHHHhcCCCHHHhccCCCCHHHHHHHHHHHHH
Confidence 346778899999997543 21 1123556777764321 1233333332 233321111 11222222212111111
Q ss_pred CCCCccEEE-eCcccccChhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 127 GKPSLRLLY-VTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 127 ~~~~~~il~-~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
.. ...+.+ -+|. +.-......+........+++||||=.+.+..
T Consensus 275 l~-~~~l~i~d~~~-~~~~~i~~~i~~~~~~~~~~~vvID~l~~i~~ 319 (434)
T TIGR00665 275 LS-EAPLYIDDTPG-LTITELRAKARRLKREHGLGLIVIDYLQLMSG 319 (434)
T ss_pred Hh-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchHhcCC
Confidence 11 122222 2222 11122333333443344589999998888753
No 351
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=87.92 E-value=4.5 Score=39.98 Aligned_cols=118 Identities=19% Similarity=0.135 Sum_probs=49.1
Q ss_pred cCCcEEEEcCCCchHHHHH-HH-HHHc-----------CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCY-QI-PALA-----------KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~-~l-pal~-----------~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~ 118 (724)
.|.=+++.+|+|+|||... ++ ..+. .+..|++|..-.. ..+..+++...+... ......
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~~~-------~~~~~~ 102 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQDY-------DDDANL 102 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHTTS--------HHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhccc-------CCccce
Confidence 4556889999999999643 22 2222 3467888876555 234455555432111 111111
Q ss_pred HHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhc-CCccEEEEccccccccCCCCChH
Q 004900 119 KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRP 179 (724)
Q Consensus 119 ~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~-~~l~lIVIDEAH~l~~~G~dFrp 179 (724)
.... .... ....++............+..+...... ..+++||||=...+..-+.+...
T Consensus 103 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~~~~ 162 (193)
T PF13481_consen 103 FFVD-LSNW-GCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDENSNS 162 (193)
T ss_dssp HHHH-H--E--EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-HH
T ss_pred EEee-cccc-ccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCCCHH
Confidence 1111 1100 0111111110011123344555555444 56999999999888764433333
No 352
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=87.92 E-value=5.4 Score=44.78 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=31.1
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHH
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~ 212 (724)
.+...++||||+|.|..-. -..|-+.....|...++++++|-+..+...|.
T Consensus 115 ~~~~kViiIDead~m~~~a------anaLLk~LEep~~~~~fIL~a~~~~~llpTIr 165 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA------ANALLKAVEEPPPRTVWLLCAPSPEDVLPTIR 165 (394)
T ss_pred cCCcEEEEEechhhcCHHH------HHHHHHHhhcCCCCCeEEEEECChHHChHHHH
Confidence 3456799999999996522 12344444555555567777766555554443
No 353
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=87.86 E-value=4.8 Score=45.93 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=14.8
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
+.+++.+|+|+|||....
T Consensus 131 n~l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CeEEEEcCCCCcHHHHHH
Confidence 358999999999997544
No 354
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=87.85 E-value=0.48 Score=56.48 Aligned_cols=49 Identities=22% Similarity=0.286 Sum_probs=41.2
Q ss_pred CcEEEEcCCCchHHHHHHHHHHcC-CCeEEEEcCcHHHHHHHHHHHHHcC
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKEKG 102 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~~-~~~vLVlsPl~aL~~qqv~~l~~~g 102 (724)
.+++++||||+|||..+.+|.|+. .+.+||+=|--++........++.|
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G 194 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG 194 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC
Confidence 579999999999999999999875 6788999999999876666555555
No 355
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=87.75 E-value=5.1 Score=42.90 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=15.0
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
.+++.+|+|+|||.+...
T Consensus 40 ~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALA 57 (319)
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 589999999999976543
No 356
>PRK04328 hypothetical protein; Provisional
Probab=87.74 E-value=0.65 Score=48.66 Aligned_cols=51 Identities=18% Similarity=0.068 Sum_probs=32.8
Q ss_pred cCCcEEEEcCCCchHHH-HHHH--HHHcCCCeEEEEcCcHHHHHHHHHHHHHcCC
Q 004900 52 SGRDCFCLMPTGGGKSM-CYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl-~~~l--pal~~~~~vLVlsPl~aL~~qqv~~l~~~gi 103 (724)
.|.-+++.+++|+|||. +.++ -.+.++..+++++ +-+-..+..+.+..+|.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~ 75 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGW 75 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCC
Confidence 34678899999999985 4443 3345667777776 32333445556666665
No 357
>PRK10867 signal recognition particle protein; Provisional
Probab=87.61 E-value=16 Score=41.58 Aligned_cols=49 Identities=24% Similarity=0.210 Sum_probs=29.4
Q ss_pred EEEEcCCCchHHHHHHHHH--H-cC-CCeEEEEc--CcHHHHHHHHHHHH-HcCCc
Q 004900 56 CFCLMPTGGGKSMCYQIPA--L-AK-PGIVLVVS--PLIALMENQVIGLK-EKGIA 104 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lpa--l-~~-~~~vLVls--Pl~aL~~qqv~~l~-~~gi~ 104 (724)
+++++++|+|||.+..--+ + .. +.++++|. +.+.-+.+|...+. ..|++
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~ 158 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVP 158 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCe
Confidence 5788999999997544322 2 23 45566655 56666665554443 34444
No 358
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.61 E-value=11 Score=45.73 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=31.9
Q ss_pred ccEEEEccccccccCCCCChHHHHHHHHHHh-hCCCCCEEEEeecCChhhHHHHHHhhc
Q 004900 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRN-YLPDVPILALTATAAPKVQKDVMESLC 216 (724)
Q Consensus 159 l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~-~~p~~pil~LSAT~~~~v~~di~~~l~ 216 (724)
.++|+||=+-+... -......+..+.. ..|.-.++.++||...+...++.+.+.
T Consensus 264 ~D~VLIDTAGRs~~----d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~ 318 (767)
T PRK14723 264 KHLVLIDTVGMSQR----DRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYR 318 (767)
T ss_pred CCEEEEeCCCCCcc----CHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHh
Confidence 57888887765432 1222333444332 224456888899988777776765553
No 359
>PRK10689 transcription-repair coupling factor; Provisional
Probab=87.41 E-value=1.2 Score=56.63 Aligned_cols=76 Identities=9% Similarity=0.096 Sum_probs=63.6
Q ss_pred CCceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cccccCCCCcceEE
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a-~g~GIDip~V~~VI 331 (724)
.+.+++|.|+|+.-+.+++..+.+. ++.+..++++.+..++..+++...+|.++|||+|.. +...+++.++.+||
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 3567999999999999999888753 467788999999999999999999999999999975 33456777888877
Q ss_pred e
Q 004900 332 H 332 (724)
Q Consensus 332 ~ 332 (724)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 4
No 360
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=87.40 E-value=4.6 Score=46.23 Aligned_cols=44 Identities=18% Similarity=0.027 Sum_probs=24.5
Q ss_pred CcEEEEcCCCchHHHHHHHH-H-Hc--C-CCeEEEEcCcHHHHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIP-A-LA--K-PGIVLVVSPLIALMENQVIGL 98 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp-a-l~--~-~~~vLVlsPl~aL~~qqv~~l 98 (724)
+.+++.+++|+|||...... . +. . +..++++. ...++.+.+..+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-~~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-GDEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHHHHHHH
Confidence 35889999999999533221 1 11 2 33444444 455655544443
No 361
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=87.39 E-value=0.47 Score=56.01 Aligned_cols=165 Identities=18% Similarity=0.171 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHH--------cC-Cc-EEEEcCCCchH--HHHHHH-HHHcC-CCeEEEEcCcHHHHHHHHHHHHHcC
Q 004900 37 AQFRDKQLDAIQAVL--------SG-RD-CFCLMPTGGGK--SMCYQI-PALAK-PGIVLVVSPLIALMENQVIGLKEKG 102 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail--------~g-~d-vlv~apTGsGK--Tl~~~l-pal~~-~~~vLVlsPl~aL~~qqv~~l~~~g 102 (724)
..+...|.++|--+. .| +- .++-..-|.|| |.+-+| --.++ .+++|+++-...|-.|--+.|+..|
T Consensus 263 g~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~Dig 342 (1300)
T KOG1513|consen 263 GHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRDIG 342 (1300)
T ss_pred cchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhhcC
Confidence 356788999886543 23 22 23333445554 544322 22233 4689999999899888777788765
Q ss_pred C---ceeeecccchHHHHHHHHhhhhcCCCCccEEEeCccccc-----Ch----hHHHHHHhhhhcCCccEEEEcccccc
Q 004900 103 I---AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA-----TP----GFMSKLKKIHSRGLLNLVAIDEAHCI 170 (724)
Q Consensus 103 i---~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~-----T~----~~l~~L~~~~~~~~l~lIVIDEAH~l 170 (724)
. .+..++--...+... -..+...-.++++|.--+. +. .++..|.+.+-..-=++||+||||.-
T Consensus 343 A~~I~V~alnK~KYakIss-----~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkA 417 (1300)
T KOG1513|consen 343 ATGIAVHALNKFKYAKISS-----KENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKA 417 (1300)
T ss_pred CCCccceehhhcccccccc-----cccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhh
Confidence 3 333332211111111 0111223457777765331 11 13444444444444578999999987
Q ss_pred ccCC----CCChHHHHHHHHHHhhCCCCCEEEEeecCChh
Q 004900 171 SSWG----HDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (724)
Q Consensus 171 ~~~G----~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~ 206 (724)
...- ..--..=..+..|.+.+|+..++.-|||-..+
T Consensus 418 KNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsE 457 (1300)
T KOG1513|consen 418 KNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASE 457 (1300)
T ss_pred cccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCC
Confidence 6510 00001114466788889999999999995543
No 362
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=87.38 E-value=13 Score=42.26 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=29.9
Q ss_pred EEEEcCCCchHHHHHHH-HH-Hc--CCCeEEEEc--CcHHHHHHHHHHH-HHcCCce
Q 004900 56 CFCLMPTGGGKSMCYQI-PA-LA--KPGIVLVVS--PLIALMENQVIGL-KEKGIAG 105 (724)
Q Consensus 56 vlv~apTGsGKTl~~~l-pa-l~--~~~~vLVls--Pl~aL~~qqv~~l-~~~gi~~ 105 (724)
+++++++|+|||.+..- .. +. .+.++++|. +.+.-+.+|...+ ...|++.
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~ 158 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPV 158 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCce
Confidence 67899999999976432 22 22 345566555 5566566666554 3345443
No 363
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.38 E-value=3.6 Score=48.11 Aligned_cols=20 Identities=20% Similarity=0.142 Sum_probs=15.7
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa 74 (724)
.+|+.+|.|+|||....+-+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999998765443
No 364
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=87.31 E-value=3.4 Score=50.25 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=20.4
Q ss_pred CcEEEEcCCCchHHHHHHHHHHcCCCeEEEE
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~~~~~vLVl 84 (724)
+.+++.+|+|+|||+..-.-+-..+...+.+
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 4689999999999986654443333333333
No 365
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=87.30 E-value=2.3 Score=46.30 Aligned_cols=52 Identities=10% Similarity=0.062 Sum_probs=33.9
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHH
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~ 213 (724)
.+...++|||+||.|..-. -..|-+..+.-|..-++.|.++-+..+...|..
T Consensus 106 ~~~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESA------SNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred cCCceEEEecchhhhCHHH------HHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 4558899999999997522 234555555555555677777766666665544
No 366
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=87.25 E-value=1 Score=54.45 Aligned_cols=63 Identities=21% Similarity=0.237 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH--HHH-Hc----CCCeEEEEcCcHHHHHHHHHHHHHc
Q 004900 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~--lpa-l~----~~~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
..|++-|.+++.. ....++|.|..|||||.+.. +.- +. .+..+|+|+.|+..+.+..+++.++
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 4689999999876 34689999999999996532 222 22 2457999999999998888887663
No 367
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=87.23 E-value=0.8 Score=55.49 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH--HHH-Hc----CCCeEEEEcCcHHHHHHHHHHHHHc
Q 004900 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~--lpa-l~----~~~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
..|+|-|.+++... ...++|.|+.|||||.+.. +.- +. .+..+|+|+-|+..+.+..+++.++
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 35899999998753 4689999999999996532 222 22 2457999999999999988887763
No 368
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.15 E-value=2.5 Score=49.02 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=14.3
Q ss_pred EEEEcCCCchHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 56 vlv~apTGsGKTl~~~l 72 (724)
+++.+|.|+|||.+..+
T Consensus 39 ~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 39 YLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 49999999999987544
No 369
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.08 E-value=5.7 Score=45.88 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.3
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lpa 74 (724)
.++.+|.|+|||.+..+-+
T Consensus 41 yLf~Gp~G~GKTtlAr~lA 59 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILA 59 (486)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 5789999999998766544
No 370
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=86.96 E-value=2.2 Score=50.32 Aligned_cols=77 Identities=23% Similarity=0.265 Sum_probs=64.5
Q ss_pred CCceEEEEecccccH----HHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cccccCCCCcceEE
Q 004900 257 GDTCAIVYCLERTTC----DELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~----e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a-~g~GIDip~V~~VI 331 (724)
.+.++..-++|---| +.+.++|...|+.+..+.|.+..+.|..++++..+|+++|+|.|-| |...|++.+..+||
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVI 389 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVI 389 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEE
Confidence 355788899986555 4455555667999999999999999999999999999999999998 67789999998888
Q ss_pred ee
Q 004900 332 HF 333 (724)
Q Consensus 332 ~~ 333 (724)
.-
T Consensus 390 iD 391 (677)
T COG1200 390 ID 391 (677)
T ss_pred Ee
Confidence 43
No 371
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=86.93 E-value=4.4 Score=49.35 Aligned_cols=20 Identities=15% Similarity=0.100 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
..++++++|+|+|||.....
T Consensus 207 ~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCeEEECCCCCCHHHHHHH
Confidence 35899999999999987543
No 372
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=86.82 E-value=4.8 Score=44.15 Aligned_cols=77 Identities=9% Similarity=0.076 Sum_probs=42.2
Q ss_pred cccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHH--cCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHH
Q 004900 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIA 89 (724)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail--~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~a 89 (724)
.+...+.+++-.++..+-+++..-..=..| +.+..+- --+-+++.+|+|+||||++=.-|- +..-+.+=+.--+
T Consensus 145 ~PdvtY~dIGGL~~Qi~EirE~VELPL~~P---ElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~-~T~AtFIrvvgSE 220 (406)
T COG1222 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNP---ELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN-QTDATFIRVVGSE 220 (406)
T ss_pred CCCCChhhccCHHHHHHHHHHHhcccccCH---HHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh-ccCceEEEeccHH
Confidence 445566777776777776666533221112 2222211 125799999999999996543332 2333444444446
Q ss_pred HHH
Q 004900 90 LME 92 (724)
Q Consensus 90 L~~ 92 (724)
|++
T Consensus 221 lVq 223 (406)
T COG1222 221 LVQ 223 (406)
T ss_pred HHH
Confidence 653
No 373
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=86.82 E-value=3.1 Score=44.43 Aligned_cols=18 Identities=28% Similarity=0.241 Sum_probs=14.2
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
+.+++++|||+|||.+..
T Consensus 195 ~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLA 212 (282)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457789999999997543
No 374
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=86.80 E-value=5.1 Score=46.73 Aligned_cols=56 Identities=13% Similarity=-0.003 Sum_probs=34.2
Q ss_pred cccCCCCCchHHHHHHHHHHcCC-CCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHH
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGH-AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~-~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~l 72 (724)
..+|++++-.+.....|.+...+ .++..++.-.+. --+-+|+++|+|+|||..+..
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~---PprGvLlHGPPGCGKT~lA~A 242 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVR---PPRGVLLHGPPGCGKTSLANA 242 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCC---CCCceeeeCCCCccHHHHHHH
Confidence 45677777766666666664443 333333332211 126799999999999986543
No 375
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=86.76 E-value=1.7 Score=47.42 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHH-cCCcEEEEcCCCchHHHHH--HHHHH---cCCCeEEEEcCcHHH
Q 004900 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY--QIPAL---AKPGIVLVVSPLIAL 90 (724)
Q Consensus 39 lr~~Q~eaI~ail-~g~dvlv~apTGsGKTl~~--~lpal---~~~~~vLVlsPl~aL 90 (724)
+.+.|.+.+..++ .+.+++++++||+|||... ++..+ ....++++|=...+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 6788888776665 4568999999999999642 23333 123456665555555
No 376
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=86.71 E-value=2.6 Score=45.20 Aligned_cols=47 Identities=21% Similarity=0.218 Sum_probs=28.2
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHH
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~ 209 (724)
+...+|+||||+.|.. ..-..+.......|..-.+.|++.....+..
T Consensus 108 ~~~kviiidead~mt~------~A~nallk~lEep~~~~~~il~~n~~~~il~ 154 (325)
T COG0470 108 GGYKVVIIDEADKLTE------DAANALLKTLEEPPKNTRFILITNDPSKILP 154 (325)
T ss_pred CCceEEEeCcHHHHhH------HHHHHHHHHhccCCCCeEEEEEcCChhhccc
Confidence 4588999999999875 2223455555555544455555544444433
No 377
>PRK06321 replicative DNA helicase; Provisional
Probab=86.68 E-value=5.1 Score=46.12 Aligned_cols=154 Identities=14% Similarity=0.162 Sum_probs=70.7
Q ss_pred HHHHHHcC---Cc-EEEEcCCCchHHHHHHHHH----HcCCCeEEEEc---CcHHHHHHHHHHHHHcCCceeeec-ccch
Q 004900 46 AIQAVLSG---RD-CFCLMPTGGGKSMCYQIPA----LAKPGIVLVVS---PLIALMENQVIGLKEKGIAGEFLS-STQT 113 (724)
Q Consensus 46 aI~ail~g---~d-vlv~apTGsGKTl~~~lpa----l~~~~~vLVls---Pl~aL~~qqv~~l~~~gi~~~~l~-s~~~ 113 (724)
.+..+..| .+ +++.|.+|.|||...+--+ ...+..+++++ |...|+...... ..++...-+. +...
T Consensus 215 ~LD~~t~Gl~~G~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ql~~Rlla~--~s~v~~~~i~~~~l~ 292 (472)
T PRK06321 215 DLDKMINGFSPSNLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVDQLIHRIICS--RSEVESKKISVGDLS 292 (472)
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHHHHHHHHHHh--hcCCCHHHhhcCCCC
Confidence 34555544 34 4667899999997543222 22355677776 334444332221 1234332221 2223
Q ss_pred HHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCC--CChHHHHHHHHHHhhC
Q 004900 114 MQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH--DFRPSYRKLSSLRNYL 191 (724)
Q Consensus 114 ~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~--dFrp~y~~L~~l~~~~ 191 (724)
......+........ ...+++--...+...........+.....+++||||=.+.+..-+. ........++.+.+.+
T Consensus 293 ~~e~~~~~~a~~~l~-~~~~~idd~~~~ti~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~~~~r~~ei~~Isr~L 371 (472)
T PRK06321 293 GRDFQRIVSVVNEMQ-EHTLLIDDQPGLKITDLRARARRMKESYDIQFLIIDYLQLLSGSGNLRNSESRQTEISEISRML 371 (472)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHHcCCCCccCCcchHHHHHHHHHHHH
Confidence 333333322222211 1233332111222222334444444445689999999998864331 0111122333332222
Q ss_pred ------CCCCEEEEeec
Q 004900 192 ------PDVPILALTAT 202 (724)
Q Consensus 192 ------p~~pil~LSAT 202 (724)
-++|++++|-.
T Consensus 372 K~lAkel~vpVi~lsQL 388 (472)
T PRK06321 372 KNLARELNIPILCLSQL 388 (472)
T ss_pred HHHHHHhCCcEEEEeec
Confidence 17888888764
No 378
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=86.61 E-value=3.7 Score=43.18 Aligned_cols=21 Identities=19% Similarity=0.365 Sum_probs=17.7
Q ss_pred HHcCCcEEEEcCCCchHHHHH
Q 004900 50 VLSGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 50 il~g~dvlv~apTGsGKTl~~ 70 (724)
+-.|+.+++.+|.|+|||...
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLl 33 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLL 33 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 347889999999999999643
No 379
>PRK09354 recA recombinase A; Provisional
Probab=86.55 E-value=3.6 Score=45.30 Aligned_cols=96 Identities=20% Similarity=0.222 Sum_probs=55.7
Q ss_pred HHHHHHc-C-----CcEEEEcCCCchHHHHHHH---HHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHH
Q 004900 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (724)
Q Consensus 46 aI~ail~-g-----~dvlv~apTGsGKTl~~~l---pal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~ 116 (724)
.+..++. | +-+.+.+|+|+|||...+- -+...++.+++|..--++-. +.+..+|+..
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvdl----------- 112 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVDI----------- 112 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCCH-----------
Confidence 4556666 3 4567899999999964332 22345778888887766643 3445555431
Q ss_pred HHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 117 ~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
-++++..|... ...+..+..+...+.+++||||=+-.+.
T Consensus 113 --------------d~lli~qp~~~--Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 113 --------------DNLLVSQPDTG--EQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred --------------HHeEEecCCCH--HHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 12334444321 1122333344445678999999766553
No 380
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=86.50 E-value=4.5 Score=39.42 Aligned_cols=51 Identities=18% Similarity=0.230 Sum_probs=34.1
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHH
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~ 213 (724)
+...++||||||.|... ....|.+..+..|..-++.|+++-...+...|..
T Consensus 101 ~~~KviiI~~ad~l~~~------a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE------AQNALLKTLEEPPENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp SSSEEEEEETGGGS-HH------HHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHT
T ss_pred CCceEEEeehHhhhhHH------HHHHHHHHhcCCCCCEEEEEEECChHHChHHHHh
Confidence 45789999999998752 2345666677777666777777777776666544
No 381
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=86.46 E-value=10 Score=45.21 Aligned_cols=152 Identities=13% Similarity=0.083 Sum_probs=75.7
Q ss_pred HHHHHHHHHcCCcEEEEcCCCchHHHHHHH---HHHc-CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHH
Q 004900 43 QLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKT 118 (724)
Q Consensus 43 Q~eaI~ail~g~dvlv~apTGsGKTl~~~l---pal~-~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~ 118 (724)
+.+.+-...+.+-.++.+|-|-|||.+..+ ..+. .+..++|.+|...-+.+....+...-..... ....... .
T Consensus 177 ~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~--~~~fp~~-~ 253 (752)
T PHA03333 177 EIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQH--KPWFPEE-F 253 (752)
T ss_pred HHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhcc--ccccCCC-c
Confidence 333444445667788999999999975432 2222 4678999999887777766665542110000 0000000 0
Q ss_pred HHHhhhhcCCCCccEEEeCccccc----ChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCC
Q 004900 119 KIYEDLDSGKPSLRLLYVTPELTA----TPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDV 194 (724)
Q Consensus 119 ~i~~~l~~~~~~~~il~~TPE~i~----T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~ 194 (724)
. +.....+ ...+.|..|.... +-.|...-........++++|||||+-+.. +.+..+.-+... .+.
T Consensus 254 ~-iv~vkgg--~E~I~f~~p~gak~G~sti~F~Ars~~s~RG~~~DLLIVDEAAfI~~------~~l~aIlP~l~~-~~~ 323 (752)
T PHA03333 254 K-IVTLKGT--DENLEYISDPAAKEGKTTAHFLASSPNAARGQNPDLVIVDEAAFVNP------GALLSVLPLMAV-KGT 323 (752)
T ss_pred e-EEEeeCC--eeEEEEecCcccccCcceeEEecccCCCcCCCCCCEEEEECcccCCH------HHHHHHHHHHcc-CCC
Confidence 0 0001111 1234444433221 000100001111112378999999998764 223334333333 368
Q ss_pred CEEEEeecCChhh
Q 004900 195 PILALTATAAPKV 207 (724)
Q Consensus 195 pil~LSAT~~~~v 207 (724)
|++.+|.+-+...
T Consensus 324 k~IiISS~~~~~s 336 (752)
T PHA03333 324 KQIHISSPVDADS 336 (752)
T ss_pred ceEEEeCCCCcch
Confidence 8999988875553
No 382
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=86.25 E-value=4.5 Score=49.21 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
++.+++.+|+|+|||.....
T Consensus 212 ~~giLL~GppGtGKT~lara 231 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKA 231 (733)
T ss_pred CceEEEECCCCCChHHHHHH
Confidence 46799999999999976543
No 383
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=86.24 E-value=1.5 Score=46.69 Aligned_cols=46 Identities=22% Similarity=0.234 Sum_probs=27.3
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcC----CcEEEEcCCCchHHHHHHHHH
Q 004900 29 LLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 29 ~L~~~fG~~~lr~~Q~eaI~ail~g----~dvlv~apTGsGKTl~~~lpa 74 (724)
.|.++.|-.+.+..=.-.|.+.... .++++.+|+|.|||..+.+-+
T Consensus 24 ~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA 73 (332)
T COG2255 24 TLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIA 73 (332)
T ss_pred cHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHH
Confidence 4455555544433222234444332 368999999999998665544
No 384
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=86.17 E-value=12 Score=41.49 Aligned_cols=45 Identities=16% Similarity=0.181 Sum_probs=26.8
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChh
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~ 206 (724)
.+...+|||||||.|..-. -..|-...+..|...+++|.++.+..
T Consensus 139 ~g~~rVviIDeAd~l~~~a------anaLLk~LEEpp~~~~fiLit~~~~~ 183 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA------ANAILKTLEEPPARALFILISHSSGR 183 (351)
T ss_pred cCCceEEEEEchhhcCHHH------HHHHHHHHhcCCCCceEEEEECChhh
Confidence 4567899999999986422 23344445555544455555454433
No 385
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=86.16 E-value=7.2 Score=46.29 Aligned_cols=74 Identities=19% Similarity=0.188 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHH--HHHHHc---CCCeEEEEcCcHHHHHHHHHHH
Q 004900 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALA---KPGIVLVVSPLIALMENQVIGL 98 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~--~lpal~---~~~~vLVlsPl~aL~~qqv~~l 98 (724)
+.+...|+.+|++..+.. .+-...+.+-.++..|-=.|||.+. ++..+. .+-.+++++|.+..++...+++
T Consensus 229 ~r~~~~lk~~Fdi~~~s~----~~~~~fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI 304 (738)
T PHA03368 229 ERVERFLRTVFNTPLFSD----AAVRHFRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEI 304 (738)
T ss_pred HHHHHHHHHHcCCccccH----HHHHHhhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHH
Confidence 456778899999887754 2333446678889999999999743 333232 5778999999999988888887
Q ss_pred HHc
Q 004900 99 KEK 101 (724)
Q Consensus 99 ~~~ 101 (724)
..+
T Consensus 305 ~~~ 307 (738)
T PHA03368 305 GAR 307 (738)
T ss_pred HHH
Confidence 763
No 386
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=86.08 E-value=1.1 Score=44.50 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=24.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHH--HHcCCCeEEEEcCcHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIP--ALAKPGIVLVVSPLIALMEN 93 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lp--al~~~~~vLVlsPl~aL~~q 93 (724)
+++++++.+|+|+|||..+... .+...+..+..++..+|+..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~ 89 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDE 89 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecc
Confidence 5678999999999999643322 22334444444556566544
No 387
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=85.85 E-value=7 Score=41.16 Aligned_cols=77 Identities=12% Similarity=0.184 Sum_probs=44.6
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHH
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail-~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~ 92 (724)
...+.+++--.+....|+++.-..-+.|.-- +..-. --+-+++.+|.|+|||||+-..+ .+..-+.|-+--.+|++
T Consensus 173 dvty~dvggckeqieklrevve~pll~perf--v~lgidppkgvllygppgtgktl~arava-nrtdacfirvigselvq 249 (435)
T KOG0729|consen 173 DVTYSDVGGCKEQIEKLREVVELPLLHPERF--VNLGIDPPKGVLLYGPPGTGKTLCARAVA-NRTDACFIRVIGSELVQ 249 (435)
T ss_pred CcccccccchHHHHHHHHHHHhccccCHHHH--hhcCCCCCCceEEeCCCCCchhHHHHHHh-cccCceEEeehhHHHHH
Confidence 4455666666777777777654444444211 11100 12679999999999999864432 34444555555556654
Q ss_pred H
Q 004900 93 N 93 (724)
Q Consensus 93 q 93 (724)
.
T Consensus 250 k 250 (435)
T KOG0729|consen 250 K 250 (435)
T ss_pred H
Confidence 3
No 388
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=85.79 E-value=1 Score=52.78 Aligned_cols=38 Identities=32% Similarity=0.353 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHH----cCCcEEEEcCCCchHHHHHHHHHH
Q 004900 38 QFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL 75 (724)
Q Consensus 38 ~lr~~Q~eaI~ail----~g~dvlv~apTGsGKTl~~~lpal 75 (724)
+|+++|.+.+..+. .|+-.|+..|||+||||..+-.++
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaal 56 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAAL 56 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHH
Confidence 47789999887654 688889999999999986554443
No 389
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=85.63 E-value=5.1 Score=45.59 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.8
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpa 74 (724)
.+.+++.+|+|+|||+..-..+
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA 238 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVA 238 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999765544
No 390
>PRK07004 replicative DNA helicase; Provisional
Probab=85.62 E-value=4.6 Score=46.36 Aligned_cols=144 Identities=17% Similarity=0.116 Sum_probs=64.7
Q ss_pred CcEEEEcCCCchHHHHHHHH----HHcCCCeEEEEcC---cHHHHHHHHHHHHHcCCceeee-cccchHHHHHHHHhhhh
Q 004900 54 RDCFCLMPTGGGKSMCYQIP----ALAKPGIVLVVSP---LIALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLD 125 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp----al~~~~~vLVlsP---l~aL~~qqv~~l~~~gi~~~~l-~s~~~~~~~~~i~~~l~ 125 (724)
.=+++.|.+|+|||...+-- ++..+..+++++. ...|+...+... .++....+ .+..+..+...+.....
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ql~~R~la~~--~~v~~~~i~~g~l~~~e~~~~~~a~~ 291 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQLAMRMLGSV--GRLDQHRMRTGRLTDEDWPKLTHAVQ 291 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHhh--cCCCHHHHhcCCCCHHHHHHHHHHHH
Confidence 34677889999999754422 2234667777763 334433322211 12332222 12223333332222222
Q ss_pred cCCCCccEEEe-CcccccChhHHHHHHhhhhc-CCccEEEEccccccccCCCCChHHHHHHHHHHhhC------CCCCEE
Q 004900 126 SGKPSLRLLYV-TPELTATPGFMSKLKKIHSR-GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPIL 197 (724)
Q Consensus 126 ~~~~~~~il~~-TPE~i~T~~~l~~L~~~~~~-~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~------p~~pil 197 (724)
... +..+.+. +|. +..........++... +.+++||||=.+.+...+.. ......++.+.+.+ -++|++
T Consensus 292 ~l~-~~~l~I~d~~~-~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~-~~r~~ei~~Isr~LK~lAkel~ipVi 368 (460)
T PRK07004 292 KMS-EAQLFIDETGG-LNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQG-ENRATEISEISRSLKSLAKELDVPVI 368 (460)
T ss_pred HHh-cCCEEEECCCC-CCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCC-CcHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 111 1333332 222 2112223333333322 45899999999988643211 11122233222211 277888
Q ss_pred EEeec
Q 004900 198 ALTAT 202 (724)
Q Consensus 198 ~LSAT 202 (724)
++|--
T Consensus 369 ~lsQL 373 (460)
T PRK07004 369 ALSQL 373 (460)
T ss_pred EEecc
Confidence 88753
No 391
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.59 E-value=21 Score=34.70 Aligned_cols=30 Identities=30% Similarity=0.226 Sum_probs=19.0
Q ss_pred EEEEcCCCchHHHHHHHHH--H-cCCCeEEEEc
Q 004900 56 CFCLMPTGGGKSMCYQIPA--L-AKPGIVLVVS 85 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lpa--l-~~~~~vLVls 85 (724)
+++.+++|+|||......+ + ..+.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5788999999998654322 2 2344555544
No 392
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.55 E-value=5.3 Score=47.19 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=28.3
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHH
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di 211 (724)
.+...++||||+|.+.... ...|.+.....|..-++.|.+|-...+...|
T Consensus 117 ~~~~KVvIIdev~~Lt~~a------~naLLk~LEepp~~~~fIl~t~~~~kl~~tI 166 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNA------FNALLKTLEEPPPHVKFIFATTEPHKVPITI 166 (576)
T ss_pred cCCceEEEEEChhhCCHHH------HHHHHHHHHcCCCCeEEEEEeCChhhhhHHH
Confidence 3457899999999987522 2445555555444334444445444444333
No 393
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.38 E-value=5.6 Score=47.10 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.3
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lp 73 (724)
.+|+.+|.|+|||.+..+.
T Consensus 40 a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4589999999999876543
No 394
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.26 E-value=8 Score=44.51 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=37.5
Q ss_pred HHHHHhhhhcCCccEEEEccccccccCCCCChHHHHH--HHHHHhhC----CCCCEEEEeecCChhhHH
Q 004900 147 MSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK--LSSLRNYL----PDVPILALTATAAPKVQK 209 (724)
Q Consensus 147 l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~--L~~l~~~~----p~~pil~LSAT~~~~v~~ 209 (724)
...|.......--+.|.|||.|.+..--..--..|.+ |.+++-.. ++-.+|.+-||--|+.++
T Consensus 385 VRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD 453 (752)
T KOG0734|consen 385 VRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALD 453 (752)
T ss_pred HHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhh
Confidence 3344333334447889999999986532211111432 44444332 467899999998777654
No 395
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=85.22 E-value=4.1 Score=44.53 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=54.8
Q ss_pred HHHHHHc-C-----CcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHH
Q 004900 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (724)
Q Consensus 46 aI~ail~-g-----~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~ 116 (724)
.+..++. | +-+.+.+|+|+|||...+-.+ ...++.+++|.+--++-.+ .+..+|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd~----------- 107 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVDL----------- 107 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCCH-----------
Confidence 4566665 3 457789999999996543222 2357788888877665432 344444421
Q ss_pred HHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 117 ~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
-++++..|... ...+..+..+...+.+++||||=+-.+.
T Consensus 108 --------------~~l~v~~p~~~--eq~l~i~~~li~s~~~~lIVIDSvaal~ 146 (325)
T cd00983 108 --------------DNLLISQPDTG--EQALEIADSLVRSGAVDLIVVDSVAALV 146 (325)
T ss_pred --------------HHheecCCCCH--HHHHHHHHHHHhccCCCEEEEcchHhhc
Confidence 12333333321 1122333344445668999999866553
No 396
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=85.16 E-value=1.7 Score=47.36 Aligned_cols=60 Identities=12% Similarity=0.100 Sum_probs=43.9
Q ss_pred HHcCCCCCCHHHHHHHHHHHcCC-cEEEEcCCCchHHHH-HHHHHH-cCCCeEEEEcCcHHHH
Q 004900 32 WHFGHAQFRDKQLDAIQAVLSGR-DCFCLMPTGGGKSMC-YQIPAL-AKPGIVLVVSPLIALM 91 (724)
Q Consensus 32 ~~fG~~~lr~~Q~eaI~ail~g~-dvlv~apTGsGKTl~-~~lpal-~~~~~vLVlsPl~aL~ 91 (724)
+...|..+.+.|...+..+..++ ++++.+.||+|||.. ..+.+. ....++|.|=-+.+|-
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELq 213 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQ 213 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhc
Confidence 44456778999999998888776 999999999999963 223222 2345788887777763
No 397
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=85.08 E-value=1.9 Score=45.36 Aligned_cols=46 Identities=24% Similarity=0.279 Sum_probs=32.8
Q ss_pred cCCcEEEEcCCCchHHHHHHH--HHHcCCCeEEEEcCcHHHHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMENQVIG 97 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l--pal~~~~~vLVlsPl~aL~~qqv~~ 97 (724)
.+.++++.+|+|+|||..... -.+.+.+.-+.++++.+|+.+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 567999999999999964332 2233667777788888887764433
No 398
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=85.07 E-value=1.9 Score=51.77 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH--HH-HHc----CCCeEEEEcCcHHHHHHHHHHHHH
Q 004900 39 FRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IP-ALA----KPGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 39 lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~--lp-al~----~~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
|++-|.+++.. ....++|.|+.|+|||.+-. +. .+. .+..+|+|+.|+..+.+.-+++.+
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 78999999876 35689999999999997533 21 221 245789999999999888887765
No 399
>PRK11054 helD DNA helicase IV; Provisional
Probab=85.05 E-value=2.5 Score=50.92 Aligned_cols=62 Identities=21% Similarity=0.239 Sum_probs=47.9
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHH---Hc----CCCeEEEEcCcHHHHHHHHHHHHH
Q 004900 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA---LA----KPGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpa---l~----~~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
..+++.|.+|+.. ....++|.|..|+|||.+..--+ +. .+..+|+++.++..+....+++..
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 4699999998864 33578999999999997643221 22 345899999999999988888766
No 400
>PRK14701 reverse gyrase; Provisional
Probab=85.00 E-value=2.4 Score=55.54 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=54.6
Q ss_pred CCceEEEEecccccHHHHHHHHHhC------CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~------gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g 319 (724)
.+.++||.++|+.-+.+++..|... ++.+..+||+++..++..+++.+.+|+.+|||+|.-+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL 189 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFL 189 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchh
Confidence 3457999999999999999998862 46678999999999999999999999999999997533
No 401
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=84.96 E-value=7.3 Score=47.39 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
.++++++|+|+|||....
T Consensus 204 ~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 589999999999998654
No 402
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=84.67 E-value=3 Score=45.82 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=34.5
Q ss_pred hcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHH
Q 004900 155 SRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVME 213 (724)
Q Consensus 155 ~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~ 213 (724)
..+...++|||+||.|..-. -..|-+..+.-|..-+++|.+.-+..+...|..
T Consensus 105 ~~g~~kV~iI~~ae~m~~~A------aNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS 157 (334)
T PRK07993 105 RLGGAKVVWLPDAALLTDAA------ANALLKTLEEPPENTWFFLACREPARLLATLRS 157 (334)
T ss_pred ccCCceEEEEcchHhhCHHH------HHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 34668899999999997522 134445555555555677777766666665544
No 403
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.67 E-value=4.9 Score=45.71 Aligned_cols=68 Identities=18% Similarity=0.186 Sum_probs=50.5
Q ss_pred EEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----cccc-ccCCCCcceE
Q 004900 261 AIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGM-GIDRKDVRLV 330 (724)
Q Consensus 261 ~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~-----a~g~-GIDip~V~~V 330 (724)
++|.|+|++.|.++....++ .|+.+...|||++.-++..-|+ -...|||||. ..-| |+|+.+|.++
T Consensus 299 ~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTPgRlid~VkmKatn~~rvS~L 374 (731)
T KOG0339|consen 299 GVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATPGRLIDMVKMKATNLSRVSYL 374 (731)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEechHHHHHHHHhhcccceeeeEE
Confidence 57778999999888665544 5889999999999887765554 4567999995 2222 5788888776
Q ss_pred Ee
Q 004900 331 CH 332 (724)
Q Consensus 331 I~ 332 (724)
|.
T Consensus 375 V~ 376 (731)
T KOG0339|consen 375 VL 376 (731)
T ss_pred EE
Confidence 63
No 404
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=84.49 E-value=4.4 Score=44.17 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=53.6
Q ss_pred HHHHHHc-C-----CcEEEEcCCCchHHHHHH-H--HHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHH
Q 004900 46 AIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (724)
Q Consensus 46 aI~ail~-g-----~dvlv~apTGsGKTl~~~-l--pal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~ 116 (724)
.+..++. | +-+.+.+|+|+|||...+ + -+...++.+++|..--++-.. .+..+|+..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~----------- 107 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDI----------- 107 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCH-----------
Confidence 4455554 3 457789999999997533 2 223456778888665544332 344445431
Q ss_pred HHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 117 ~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
-++++..|... ...+..+..+...+.+++||||-+-.+.
T Consensus 108 --------------~~l~v~~p~~~--eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 108 --------------DNLLVSQPDTG--EQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred --------------HHeEEecCCCH--HHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 12334444321 1122333344445668999999877654
No 405
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=84.49 E-value=3.4 Score=46.33 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.1
Q ss_pred HcCCcEEEEcCCCchHHHHHHH
Q 004900 51 LSGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~~l 72 (724)
-.|+.+++++|+|+|||.....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~ 187 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQK 187 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHH
Confidence 3678899999999999975443
No 406
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=84.46 E-value=7.8 Score=40.87 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=25.7
Q ss_pred CcEEEEcCCCchHHHHHHHHHHc-CCCeEEEEcCcHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALA-KPGIVLVVSPLIALMEN 93 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~-~~~~vLVlsPl~aL~~q 93 (724)
++++..+|+|+|||+.+ -++. .....++.+-..+|+-.
T Consensus 152 knVLFyGppGTGKTm~A--kalane~kvp~l~vkat~liGe 190 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA--KALANEAKVPLLLVKATELIGE 190 (368)
T ss_pred ceeEEECCCCccHHHHH--HHHhcccCCceEEechHHHHHH
Confidence 78999999999999853 3333 23445666655566544
No 407
>CHL00181 cbbX CbbX; Provisional
Probab=84.43 E-value=5.7 Score=42.64 Aligned_cols=21 Identities=19% Similarity=0.064 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lp 73 (724)
|.++++.+|+|+|||.++..-
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 345899999999999876543
No 408
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=84.37 E-value=7.5 Score=43.57 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa 74 (724)
+.+++.+|+|+|||+..-..+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia 186 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVA 186 (389)
T ss_pred CceEEECCCCCChHHHHHHHH
Confidence 569999999999998654433
No 409
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=84.28 E-value=5.6 Score=41.56 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=67.1
Q ss_pred CCceeeecCCCCHHHHHHHHHHhhcCC----ceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccC-CCCCCC
Q 004900 282 GISCAAYHAGLNDKARSSVLDDWISSR----KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAG-RDQLPS 356 (724)
Q Consensus 282 gi~v~~~H~~l~~~eR~~vl~~F~~g~----~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAG-RdG~~g 356 (724)
++.+..++++.+... -.|.++. ..|+|.=+.+++|+-+++........-++..++++|+.-..| |.|-..
T Consensus 110 ~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~QmgRwFGYR~gY~d 184 (239)
T PF10593_consen 110 GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQMGRWFGYRPGYED 184 (239)
T ss_pred CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHHhhcccCCccccc
Confidence 455555555443322 2344443 789999999999999999999999999999999999887777 888888
Q ss_pred eEEEEEccccHHHHHHHHH
Q 004900 357 KSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 357 ~~il~~~~~D~~~~~~i~~ 375 (724)
.|-+|..++-...+..+..
T Consensus 185 l~Ri~~~~~l~~~f~~i~~ 203 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAE 203 (239)
T ss_pred ceEEecCHHHHHHHHHHHH
Confidence 9999987766666665554
No 410
>PRK06749 replicative DNA helicase; Provisional
Probab=84.16 E-value=11 Score=42.85 Aligned_cols=33 Identities=12% Similarity=-0.183 Sum_probs=20.8
Q ss_pred cEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCc
Q 004900 55 DCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl 87 (724)
=+++.|.||.|||...+--+ ...+..+++++.-
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~~g~~v~~fSlE 223 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAKSGAAVGLFSLE 223 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHhcCCCEEEEEee
Confidence 35667899999997544222 2235567777644
No 411
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=83.92 E-value=11 Score=38.38 Aligned_cols=51 Identities=22% Similarity=0.134 Sum_probs=33.7
Q ss_pred CCcEEEEcCCCchHHH-HHHHH--HHcCCCeEEEEcCcHHHHHHHHHHHHHcCCc
Q 004900 53 GRDCFCLMPTGGGKSM-CYQIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (724)
Q Consensus 53 g~dvlv~apTGsGKTl-~~~lp--al~~~~~vLVlsPl~aL~~qqv~~l~~~gi~ 104 (724)
|.-+++.+++|+|||. +.++. .+.++..+++++-... ..+..+.+..+|..
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~-~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEER-EERILGYAKSKGWD 69 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHHHcCCC
Confidence 4567889999999985 44443 3456677888875543 35556667666643
No 412
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=83.84 E-value=0.73 Score=54.90 Aligned_cols=55 Identities=13% Similarity=0.029 Sum_probs=41.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHcC-CCeEEEEcCcHHHHHHHHHHHHH-cCCceeee
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVSPLIALMENQVIGLKE-KGIAGEFL 108 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~~-~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l 108 (724)
.+++++||||+|||..+++|.+.. ++.+||+=|--++........++ .|-++..+
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~~~~S~VV~D~KGE~~~~Tag~R~~~~G~~V~~f 232 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLSWGHSSVITDLKGELWALTAGWRQKHAKNKVLRF 232 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhhCCCCEEEEeCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 579999999999999999999875 67888888999987654444323 34444433
No 413
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=83.81 E-value=3.2 Score=44.40 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
..+++.+|+|+|||.....
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4689999999999976543
No 414
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.75 E-value=2.1 Score=46.61 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHH-cCCcEEEEcCCCchHHHHHH--HHHH---cCCCeEEEEcCcHHH
Q 004900 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQ--IPAL---AKPGIVLVVSPLIAL 90 (724)
Q Consensus 39 lr~~Q~eaI~ail-~g~dvlv~apTGsGKTl~~~--lpal---~~~~~vLVlsPl~aL 90 (724)
+.+.|.+.+..+. .+++++++++||+|||.... +..+ ....++++|-.+.+|
T Consensus 133 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 133 MTAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 5678888887654 56789999999999996432 1111 223456666666555
No 415
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=83.64 E-value=5 Score=39.89 Aligned_cols=71 Identities=15% Similarity=0.193 Sum_probs=49.8
Q ss_pred CCceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----cccc-cCCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-IDRKD 326 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a-----~g~G-IDip~ 326 (724)
.+.++||.|+++.-+.+.+..+... ++.+..++|+.+..++...+ .+..+|+|+|.. +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL----KRGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----cCCCCEEEEChHHHHHHHHcCCCChhh
Confidence 4567999999999998888777654 67788899998876654333 267789999952 2222 44555
Q ss_pred cceEE
Q 004900 327 VRLVC 331 (724)
Q Consensus 327 V~~VI 331 (724)
++++|
T Consensus 144 l~~lI 148 (203)
T cd00268 144 VKYLV 148 (203)
T ss_pred CCEEE
Confidence 66655
No 416
>PHA00350 putative assembly protein
Probab=83.54 E-value=7.3 Score=43.73 Aligned_cols=24 Identities=29% Similarity=0.149 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHH----HHHHcCCC
Q 004900 56 CFCLMPTGGGKSMCYQ----IPALAKPG 79 (724)
Q Consensus 56 vlv~apTGsGKTl~~~----lpal~~~~ 79 (724)
.++.+..|+|||+..+ +|++..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~GR 31 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKDGR 31 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHCCC
Confidence 4788999999998643 45555554
No 417
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=83.41 E-value=12 Score=41.61 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (724)
+.+++++|+|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 67999999999999954
No 418
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.39 E-value=6.9 Score=46.53 Aligned_cols=42 Identities=21% Similarity=0.332 Sum_probs=25.0
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecC
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~ 203 (724)
.+...+|||||+|.+..-+ ...|.......|..-++.|.+|-
T Consensus 125 ~~~~KVvIIdEad~Lt~~a------~naLLK~LEePp~~tv~IL~t~~ 166 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAA------FNAFLKTLEEPPPHAIFIFATTE 166 (620)
T ss_pred cCCCEEEEEeChhhcCHHH------HHHHHHHHhCCCCCeEEEEEeCC
Confidence 3456799999999987522 23444444544444455555553
No 419
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=83.33 E-value=3.6 Score=47.18 Aligned_cols=53 Identities=28% Similarity=0.338 Sum_probs=46.2
Q ss_pred eEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 260 CAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 260 ~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
-+||+++||+-+.++..+|... ++.+..+.|||....+.+++++ ..+|+|||+
T Consensus 265 ~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP 321 (731)
T KOG0347|consen 265 IALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP 321 (731)
T ss_pred eeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc
Confidence 3899999999999999999763 8999999999998887777765 678999996
No 420
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=83.27 E-value=8.7 Score=47.53 Aligned_cols=16 Identities=25% Similarity=0.322 Sum_probs=13.7
Q ss_pred EEEEcCCCchHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (724)
+++++|||+|||....
T Consensus 599 ~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 599 FLLVGPSGVGKTETAL 614 (852)
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999997653
No 421
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=83.22 E-value=13 Score=36.84 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=16.6
Q ss_pred HHHHcC---CcEEEEcCCCchHHHHH
Q 004900 48 QAVLSG---RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 48 ~ail~g---~dvlv~apTGsGKTl~~ 70 (724)
..+..+ +.+++.+|.|.|||...
T Consensus 6 ~~i~~~~~~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 6 RALEKGRLAHAYLFAGPEGVGKELLA 31 (188)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 344444 35789999999999654
No 422
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.14 E-value=6.3 Score=42.81 Aligned_cols=54 Identities=11% Similarity=0.096 Sum_probs=35.1
Q ss_pred CCCCHHHHHHH-HHHHcCCcEEEEcCCCchHHHH--HHHHHHcCCCeEEEEcCcHHH
Q 004900 37 AQFRDKQLDAI-QAVLSGRDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIAL 90 (724)
Q Consensus 37 ~~lr~~Q~eaI-~ail~g~dvlv~apTGsGKTl~--~~lpal~~~~~vLVlsPl~aL 90 (724)
..+.+.|..-+ .++..+++++++++||+|||.. .++..+-...+.+.+=-+.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccc
Confidence 34667776654 4455778999999999999964 233333345556665555444
No 423
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=83.10 E-value=9.8 Score=44.52 Aligned_cols=59 Identities=15% Similarity=0.050 Sum_probs=39.4
Q ss_pred ccccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHH
Q 004900 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~ 70 (724)
+-+...|.+++-.+++...|....=+.-=+|-+-+++..-. -.-+++++|+|+||||.+
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~-PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDA-PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCC-CCceEEeCCCCccHHHHH
Confidence 45567788888888888877765433333454444442221 245899999999999954
No 424
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=83.06 E-value=3.7 Score=44.31 Aligned_cols=52 Identities=19% Similarity=0.323 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHH-cCCcEEEEcCCCchHHHHH--HHHHHcC---CCeEEEEcCcHHH
Q 004900 39 FRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY--QIPALAK---PGIVLVVSPLIAL 90 (724)
Q Consensus 39 lr~~Q~eaI~ail-~g~dvlv~apTGsGKTl~~--~lpal~~---~~~vLVlsPl~aL 90 (724)
+.+.|.+.+..++ .++++++++|||+|||... ++-.+.. ..++++|=...+|
T Consensus 117 ~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 117 MTAAQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhh
Confidence 5667777766655 4578999999999999742 2222222 4567777666665
No 425
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=82.71 E-value=6.9 Score=42.76 Aligned_cols=33 Identities=9% Similarity=0.044 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHc--C---CcEEEEcCCCchHHHHHHH
Q 004900 40 RDKQLDAIQAVLS--G---RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 40 r~~Q~eaI~ail~--g---~dvlv~apTGsGKTl~~~l 72 (724)
.|||...+..+.. + +..++.+|.|.|||..+..
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~ 40 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARF 40 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHH
Confidence 5788888877763 3 3578999999999976543
No 426
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=82.67 E-value=1.9 Score=43.99 Aligned_cols=14 Identities=29% Similarity=0.211 Sum_probs=12.2
Q ss_pred EEEEcCCCchHHHH
Q 004900 56 CFCLMPTGGGKSMC 69 (724)
Q Consensus 56 vlv~apTGsGKTl~ 69 (724)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999984
No 427
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=82.66 E-value=11 Score=41.01 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.1
Q ss_pred cEEEEcCCCchHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (724)
.+++.+|.|+|||....
T Consensus 38 ~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 38 AYLFSGPRGTGKTSIAR 54 (355)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 428
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=82.62 E-value=2.2 Score=44.97 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=27.5
Q ss_pred HHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEE
Q 004900 45 DAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (724)
Q Consensus 45 eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVl 84 (724)
.++..+..|+.+++.+|+|+|||.+...-+-..+...+.+
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4455566789999999999999987654443334444444
No 429
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=82.58 E-value=9.6 Score=47.25 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
.+.++++|+|.|||....
T Consensus 195 ~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 589999999999997654
No 430
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=82.57 E-value=2.5 Score=46.06 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=16.9
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa 74 (724)
..+++.+|+|+|||......+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia 72 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIA 72 (328)
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 478999999999998765433
No 431
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.38 E-value=2.4 Score=48.44 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHcCC--cEEEEcCCCchHHHH
Q 004900 39 FRDKQLDAIQAVLSGR--DCFCLMPTGGGKSMC 69 (724)
Q Consensus 39 lr~~Q~eaI~ail~g~--dvlv~apTGsGKTl~ 69 (724)
+.+.|.+.+..++... =++|.+|||||||..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT 274 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT 274 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH
Confidence 3688888888888664 367889999999975
No 432
>PRK07773 replicative DNA helicase; Validated
Probab=82.38 E-value=6.6 Score=48.83 Aligned_cols=145 Identities=16% Similarity=0.149 Sum_probs=65.4
Q ss_pred cEEEEcCCCchHHHHHHHHH----HcCCCeEEEEcCcHHHHHHHHHHHHH--cCCceeeec-ccchHHHHHHHHhhhhcC
Q 004900 55 DCFCLMPTGGGKSMCYQIPA----LAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLS-STQTMQVKTKIYEDLDSG 127 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa----l~~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l~-s~~~~~~~~~i~~~l~~~ 127 (724)
=+++.|++|+|||...+--+ ...+..+++++---+ ..|.+.++.. .++....+. +.........+.......
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms-~~ql~~R~~s~~~~i~~~~i~~g~l~~~~~~~~~~a~~~l 297 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMS-KEQLVMRLLSAEAKIKLSDMRSGRMSDDDWTRLARAMGEI 297 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCC-HHHHHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 36778899999997543222 223556777763222 2333444433 233222221 112222222222111111
Q ss_pred CCCccEEEe-CcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhC------CCCCEEEEe
Q 004900 128 KPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL------PDVPILALT 200 (724)
Q Consensus 128 ~~~~~il~~-TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~------p~~pil~LS 200 (724)
. ...+.+. +|. +.-......+........+++||||=.+.|..-+. .......+..+.+.+ -++|++++|
T Consensus 298 ~-~~~i~i~d~~~-~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~-~~~r~~ei~~isr~LK~lAkel~vpvi~ls 374 (886)
T PRK07773 298 S-EAPIFIDDTPN-LTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKK-YENRQQEVSEISRHLKLLAKELEVPVVALS 374 (886)
T ss_pred h-cCCEEEECCCC-CCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCC-CCCHHHHHHHHHHHHHHHHHHHCCcEEEec
Confidence 1 1233332 222 22122333344444445699999999998864211 111112222222211 289999988
Q ss_pred ecC
Q 004900 201 ATA 203 (724)
Q Consensus 201 AT~ 203 (724)
-.-
T Consensus 375 QLn 377 (886)
T PRK07773 375 QLS 377 (886)
T ss_pred ccC
Confidence 653
No 433
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=82.01 E-value=2.7 Score=46.50 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=16.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa 74 (724)
+.+++.+|+|+|||+....-+
T Consensus 157 ~gvLL~GppGtGKT~lakaia 177 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVA 177 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999998654433
No 434
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.00 E-value=5.3 Score=47.49 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=30.7
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHH
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di 211 (724)
+...+|||||+|.+... ....|.......|..-++.|++|-...+...|
T Consensus 120 ~~~KVvIIdea~~Ls~~------a~naLLK~LEepp~~tifIL~tt~~~kIl~tI 168 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQA------AFNAFLKTLEEPPSYAIFILATTEKHKILPTI 168 (614)
T ss_pred CCcEEEEEECcccCCHH------HHHHHHHHHhCCCCCeEEEEEeCCchhchHHH
Confidence 44679999999999752 23445555555555556667666544444433
No 435
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=81.71 E-value=2.7 Score=50.97 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH--HHHH-c----CCCeEEEEcCcHHHHHHHHHHHHHc
Q 004900 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-A----KPGIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~--lpal-~----~~~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
..|+|-|.+++.. ....++|.|+.|+|||.+.. +.-+ . .+..+|+|+-|+..+.+..+++..+
T Consensus 3 ~~Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 4589999999976 34689999999999996533 2222 2 2357999999998888887777653
No 436
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=81.70 E-value=6.6 Score=45.58 Aligned_cols=101 Identities=19% Similarity=0.168 Sum_probs=55.6
Q ss_pred CCcEEEEcCCCchHHHHH-HH--HHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCC
Q 004900 53 GRDCFCLMPTGGGKSMCY-QI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~-~l--pal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~ 129 (724)
|.-+++.+++|+|||... ++ -++..+..+++++-.. -..+..+.+..+|+...-. ...+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~-~~~~i~~~~~~~g~~~~~~---------------~~~g-- 334 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE-SRAQLIRNARSWGIDLEKM---------------EEKG-- 334 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC-CHHHHHHHHHHcCCChHHH---------------hhcC--
Confidence 456788999999999643 22 2344677788886443 3455566666766542110 0111
Q ss_pred CccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 130 ~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
.+.++...|....-..++..+.........++||||=..-+.
T Consensus 335 ~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDslt~l~ 376 (509)
T PRK09302 335 LLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPLSALA 376 (509)
T ss_pred CceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHH
Confidence 122333333332222344444444444567899999877654
No 437
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=81.43 E-value=3.8 Score=52.77 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH---HHHHcC---CCeEEEEcCcHHHHHHHHHHHHH
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAK---PGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~---lpal~~---~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
.+++-|.++|.. .|++++|.|.-|||||.+.. +-.+.. ...+|||+=|+..+.+...++..
T Consensus 1 ~~t~~Q~~ai~~--~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 1 QWTDEQWQAIYT--RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 368999999984 68899999999999998643 222322 24589999999988776666554
No 438
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=81.18 E-value=6.4 Score=42.65 Aligned_cols=47 Identities=30% Similarity=0.328 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHH-cCCcEEEEcCCCchHHHHHHH--HHH-----------cCCCeEEEEcC
Q 004900 40 RDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCYQI--PAL-----------AKPGIVLVVSP 86 (724)
Q Consensus 40 r~~Q~eaI~ail-~g~dvlv~apTGsGKTl~~~l--pal-----------~~~~~vLVlsP 86 (724)
|..|-+.|+.+. +|-.+|+.++.|.|||+..+. .++ ..++.+|+|+-
T Consensus 75 rs~~P~lId~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvsl 135 (402)
T COG3598 75 RSNSPQLIDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSL 135 (402)
T ss_pred cccChhhhhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEe
Confidence 445666666655 455677789999999976432 222 13567777763
No 439
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=81.08 E-value=6.2 Score=44.20 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=17.2
Q ss_pred HcCCcEEEEcCCCchHHHHH
Q 004900 51 LSGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~ 70 (724)
-.|+..++++|.|+|||...
T Consensus 167 GkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred ccCceEEEeCCCCCChhHHH
Confidence 37899999999999999643
No 440
>PRK10865 protein disaggregation chaperone; Provisional
Probab=81.08 E-value=10 Score=47.10 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
.++++++|+|.|||....
T Consensus 200 ~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred CceEEECCCCCCHHHHHH
Confidence 489999999999998654
No 441
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=81.00 E-value=2.3 Score=46.89 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=27.5
Q ss_pred HHcCCcEEEEcCCCchHHHHH--HHHHHcCCCeEEEEcCcHHHH
Q 004900 50 VLSGRDCFCLMPTGGGKSMCY--QIPALAKPGIVLVVSPLIALM 91 (724)
Q Consensus 50 il~g~dvlv~apTGsGKTl~~--~lpal~~~~~vLVlsPl~aL~ 91 (724)
+..++++++.+|||+|||... ++-.+....+++.|=.+.+|.
T Consensus 159 v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCcccc
Confidence 446789999999999999742 122222345666666666653
No 442
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.84 E-value=1.2 Score=47.88 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=16.5
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp 73 (724)
-++++++|||+|||+.++-.
T Consensus 98 SNILLiGPTGsGKTlLAqTL 117 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTL 117 (408)
T ss_pred ccEEEECCCCCcHHHHHHHH
Confidence 36899999999999976643
No 443
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=80.81 E-value=22 Score=41.12 Aligned_cols=122 Identities=21% Similarity=0.165 Sum_probs=88.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~ 156 (724)
++.++||.+=|+-+++|.-+-|...|+++..+|+....-++..+..+++.|. +++|++-. .|..-.+.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~--~DvLVGIN----------LLREGLDi 512 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE--FDVLVGIN----------LLREGLDL 512 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC--ccEEEeeh----------hhhccCCC
Confidence 5789999999999999999999999999999999999999999999999986 77777632 23333444
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHH
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~ 212 (724)
..+++|+|=+||.-.-.- .-|.....+++..+. -+..+++..-..+..+...|.
T Consensus 513 PEVsLVAIlDADKeGFLR-se~SLIQtIGRAARN-~~GkvIlYAD~iT~sM~~Ai~ 566 (663)
T COG0556 513 PEVSLVAILDADKEGFLR-SERSLIQTIGRAARN-VNGKVILYADKITDSMQKAID 566 (663)
T ss_pred cceeEEEEeecCcccccc-ccchHHHHHHHHhhc-cCCeEEEEchhhhHHHHHHHH
Confidence 558899998899643110 113334445544332 245677777777777665553
No 444
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=80.57 E-value=9.4 Score=43.73 Aligned_cols=58 Identities=22% Similarity=0.121 Sum_probs=34.9
Q ss_pred HHHHHHHcC-----CcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHHHHHHHHHHHHHcCC
Q 004900 45 DAIQAVLSG-----RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (724)
Q Consensus 45 eaI~ail~g-----~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~aL~~qqv~~l~~~gi 103 (724)
.-++.++.| .-+++.+++|+|||...+--+ ...++.+++++.--. ..|...+..++|+
T Consensus 81 ~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs-~~qi~~ra~rlg~ 146 (454)
T TIGR00416 81 GELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEES-LQQIKMRAIRLGL 146 (454)
T ss_pred HHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCC-HHHHHHHHHHcCC
Confidence 345666643 457889999999997543221 234567888886533 3444445555543
No 445
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=80.11 E-value=2.5 Score=46.30 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=26.0
Q ss_pred HHcCCcEEEEcCCCchHHHH--HHHHHHcCCCeEEEEcCcHHH
Q 004900 50 VLSGRDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIAL 90 (724)
Q Consensus 50 il~g~dvlv~apTGsGKTl~--~~lpal~~~~~vLVlsPl~aL 90 (724)
+..+++++++++||+|||.. +++..+....++++|=-+.+|
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 34568999999999999964 233333344565555444444
No 446
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=80.00 E-value=4.8 Score=48.07 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=53.0
Q ss_pred CceEEEEecccccHHHHHHHHHhC-----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccc-cCCCC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKD 326 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~-----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~-----a~g~G-IDip~ 326 (724)
...+||.|+|+.-+.+++..+... ++.+..+||+.+...+...+ ....+|||+|. .+.++ +++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l----~~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL----RQGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh----cCCCCEEEECHHHHHHHHHcCCcchhh
Confidence 457899999999999998877642 78888999998766544333 34578999994 33333 78888
Q ss_pred cceEEe
Q 004900 327 VRLVCH 332 (724)
Q Consensus 327 V~~VI~ 332 (724)
+++||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 998884
No 447
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=79.99 E-value=8.4 Score=38.72 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=23.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCc
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPL 87 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl 87 (724)
|.-+.+.+|+|+|||...+-.+ ...+..+++|.-.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e 49 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTE 49 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4567899999999997543322 2345567777654
No 448
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=79.67 E-value=2.5 Score=42.02 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=26.9
Q ss_pred CCCCHHHHHHHHHHH-cCCcEEEEcCCCchHHHHH
Q 004900 37 AQFRDKQLDAIQAVL-SGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail-~g~dvlv~apTGsGKTl~~ 70 (724)
..+.+.|.+.+...+ .|..+++++|||+|||...
T Consensus 8 g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 8 GTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred CCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 346788888887766 4678899999999999753
No 449
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=79.42 E-value=9.8 Score=41.91 Aligned_cols=64 Identities=14% Similarity=0.021 Sum_probs=38.1
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA 76 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~ 76 (724)
....|.+++-.+++.+.|++..=+.--+|..-.--..+..-+.+++.+|.|+|||+++-.-+-.
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Ake 150 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKE 150 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHH
Confidence 3566777887888888888743222222222110011112257899999999999986554433
No 450
>CHL00195 ycf46 Ycf46; Provisional
Probab=79.30 E-value=11 Score=43.63 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
+.+++.+|+|+|||+..-.
T Consensus 260 kGILL~GPpGTGKTllAka 278 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKA 278 (489)
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 5699999999999986543
No 451
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=79.13 E-value=3.6 Score=42.64 Aligned_cols=21 Identities=24% Similarity=0.237 Sum_probs=17.4
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa 74 (724)
-++++.+|+|.|||.+.+..+
T Consensus 49 P~liisGpPG~GKTTsi~~LA 69 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLA 69 (333)
T ss_pred CceEeeCCCCCchhhHHHHHH
Confidence 378999999999999866544
No 452
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=78.97 E-value=3.3 Score=52.86 Aligned_cols=77 Identities=13% Similarity=0.184 Sum_probs=58.1
Q ss_pred CceEEEEecccccHHHHHHHHHhC----CCce---eeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc-ccC-CC-Cc
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG----GISC---AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM-GID-RK-DV 327 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~----gi~v---~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~-GID-ip-~V 327 (724)
+.+++|.++|+.-+.+++..+... |+.+ ..|||+++..++...++.+.+|..+|||+|..+-. .++ +. ++
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~ 200 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKF 200 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCC
Confidence 467999999999999998888763 4443 35899999999998899999999999999975322 111 11 56
Q ss_pred ceEEeeC
Q 004900 328 RLVCHFN 334 (724)
Q Consensus 328 ~~VI~~d 334 (724)
+++|.-+
T Consensus 201 ~~iVvDE 207 (1171)
T TIGR01054 201 DFIFVDD 207 (1171)
T ss_pred CEEEEeC
Confidence 7777444
No 453
>smart00510 TFS2M Domain in the central regions of transcription elongation factor S-II (and elsewhere).
Probab=78.87 E-value=3.5 Score=37.20 Aligned_cols=76 Identities=20% Similarity=0.304 Sum_probs=52.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHhhhcccCCcchhhHHHHHHHHHhhccChHHHHhhhcCC
Q 004900 550 DVLRQGSKEKLLNALRQAQQRLRNLTIEFEASAIFLENECYNKYGKSGKSFYYSQVASTIRWLSTANSIELTNRLGID 627 (724)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (724)
+.+|+.+++-|-+||........ ...+.+.-|..+|.++|..||..++. |..++=+-+-=|.-..-.+|..|+-..
T Consensus 1 d~~R~~~~~~L~~al~~~~~~~~-~~~~~~~lA~~IE~~lf~~~~~~~~~-Yk~k~Rsl~fNLkd~kN~~Lr~~vl~G 76 (102)
T smart00510 1 DKVRDKCQEMLYKALQKISDPEE-IELDPTELAVQIEAEMFSEFGTTDKK-YKNKYRSLYFNLKDKKNPDLRRKVLNG 76 (102)
T ss_pred ChHHHHHHHHHHHHHHhcCCCCc-ccccHHHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHhcCCCCHHHHHHHHcC
Confidence 35799999999988875422211 22345556999999999999987754 777665555556555666788888543
No 454
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=78.64 E-value=1.1e+02 Score=33.49 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
..-+..+.+++......++-|||.+...+--+...+.+.|+.
T Consensus 221 ~~g~~~~~~ll~~~~~~ptAif~~nD~~Alg~l~~~~~~g~~ 262 (333)
T COG1609 221 ESGYEAAERLLARGEPRPTAIFCANDLMALGALRALRELGLR 262 (333)
T ss_pred HHHHHHHHHHHhcCCCCCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 456677777777654447899999999999888888887764
No 455
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=78.46 E-value=11 Score=45.06 Aligned_cols=36 Identities=19% Similarity=0.098 Sum_probs=24.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHhcccchhhhhhHHHH
Q 004900 550 DVLRQGSKEKLLNALRQAQQRLRNLTIEFEASAIFL 585 (724)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (724)
..+....++.|..+...|+.-|-.=.-.+++-|..|
T Consensus 543 ~~id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~L 578 (644)
T PRK10733 543 RIIDQEVKALIERNYNRARQLLTDNMDILHAMKDAL 578 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344566677777777777777766666666666555
No 456
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=78.44 E-value=17 Score=40.96 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.9
Q ss_pred CcEEEEcCCCchHHHH
Q 004900 54 RDCFCLMPTGGGKSMC 69 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~ 69 (724)
.-+++.+|+|+|||-.
T Consensus 114 nplfi~G~~GlGKTHL 129 (408)
T COG0593 114 NPLFIYGGVGLGKTHL 129 (408)
T ss_pred CcEEEECCCCCCHHHH
Confidence 5689999999999974
No 457
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=78.20 E-value=16 Score=43.12 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=15.5
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lp 73 (724)
-.|+.+|.|.|||.+..+-
T Consensus 40 ayLf~Gp~G~GKTt~Ar~l 58 (563)
T PRK06647 40 AYIFSGPRGVGKTSSARAF 58 (563)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999876543
No 458
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=78.02 E-value=0.49 Score=56.41 Aligned_cols=118 Identities=13% Similarity=0.048 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHHhc---CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCc--eEEEEccc
Q 004900 243 DDAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK--QVVVATVA 317 (724)
Q Consensus 243 ~~k~~~L~~lLk~~---~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~--~VLVAT~a 317 (724)
..++..+..+|... ..+++|||+.-..-+.-+.-.|...|+....|.|.|+...|...+..|..+.. ..+++..|
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 34555555555432 11489999999998888888888889999999999999999999999995432 25678999
Q ss_pred cccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEE
Q 004900 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (724)
Q Consensus 318 ~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il 360 (724)
.+.|+++-...+|+..|+=+++..--|.+-||.|-|+.-.+.+
T Consensus 601 g~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccceeee
Confidence 9999999999999999999999999999999999998776544
No 459
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=77.85 E-value=4.6 Score=47.01 Aligned_cols=82 Identities=24% Similarity=0.219 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCCCC-------HHHHHHHHHHHcCCcEEEEcCCCchHHHHHHH---HHH------cCCCeEEEEcCc
Q 004900 24 EALVKLLRWHFGHAQFR-------DKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQI---PAL------AKPGIVLVVSPL 87 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr-------~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~l---pal------~~~~~vLVlsPl 87 (724)
+-|+..|++.-+ .++| +.|-++|..- +++-++|++..|||||.+++- ..+ +..+.+||+.|.
T Consensus 192 EvL~~~Lek~ss-~~mrdIV~TIQkEQneIIR~e-k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN 269 (747)
T COG3973 192 EVLQRVLEKNSS-AKMRDIVETIQKEQNEIIRFE-KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPN 269 (747)
T ss_pred HHHHHHHHhccc-hhHHHHHHHhhHhHHHHHhcc-CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCc
Confidence 345556666422 2233 3455554432 445688999999999976541 111 134559999999
Q ss_pred HHHHHHHHHHHHHcCCceee
Q 004900 88 IALMENQVIGLKEKGIAGEF 107 (724)
Q Consensus 88 ~aL~~qqv~~l~~~gi~~~~ 107 (724)
+-++.=..+.|-.+|...+.
T Consensus 270 ~vFleYis~VLPeLGe~~V~ 289 (747)
T COG3973 270 RVFLEYISRVLPELGEEGVV 289 (747)
T ss_pred HHHHHHHHHhchhhccCcee
Confidence 99998888888888876544
No 460
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=77.77 E-value=18 Score=36.47 Aligned_cols=55 Identities=20% Similarity=0.284 Sum_probs=36.5
Q ss_pred HhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhH
Q 004900 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (724)
Q Consensus 151 ~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~ 208 (724)
......+..++||+||.-....+|. -+. ..+..+....|.---+.||+--.|.-.
T Consensus 108 ~~~l~~~~ydlvVLDEi~~Al~~gl--i~~-eevi~~L~~rp~~~evVlTGR~~p~~L 162 (191)
T PRK05986 108 KRMLADESYDLVVLDELTYALKYGY--LDV-EEVLEALNARPGMQHVVITGRGAPREL 162 (191)
T ss_pred HHHHhCCCCCEEEEehhhHHHHCCC--ccH-HHHHHHHHcCCCCCEEEEECCCCCHHH
Confidence 4444567799999999999998884 222 234444455565557888887666533
No 461
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.59 E-value=4.9 Score=46.14 Aligned_cols=74 Identities=16% Similarity=0.219 Sum_probs=61.3
Q ss_pred ceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc-------cc-CCCCcceE
Q 004900 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM-------GI-DRKDVRLV 330 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~-------GI-Dip~V~~V 330 (724)
..+||.++++.-+.+....|...|+.+..++++.+..++..++.....|..+||++|.-.-. .+ ...++.+|
T Consensus 52 ~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~i 131 (470)
T TIGR00614 52 GITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLI 131 (470)
T ss_pred CcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEE
Confidence 46899999999999999999999999999999999999999999999999999999974221 12 44567776
Q ss_pred Ee
Q 004900 331 CH 332 (724)
Q Consensus 331 I~ 332 (724)
|.
T Consensus 132 Vi 133 (470)
T TIGR00614 132 AV 133 (470)
T ss_pred EE
Confidence 63
No 462
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=77.43 E-value=3.5 Score=49.07 Aligned_cols=63 Identities=21% Similarity=0.234 Sum_probs=49.9
Q ss_pred HHHhhcCCceEEEEccccccccCCCCcce--------EEeeCCCCCHHHHHHHHcccCCCCCC---CeEEEEEc
Q 004900 301 LDDWISSRKQVVVATVAFGMGIDRKDVRL--------VCHFNIPKSMEAFYQESGRAGRDQLP---SKSLLYYG 363 (724)
Q Consensus 301 l~~F~~g~~~VLVAT~a~g~GIDip~V~~--------VI~~d~P~S~~~yiQr~GRAGRdG~~---g~~il~~~ 363 (724)
-++|++|+-.|-|-..+++-||-+..=+. =|-..+|+|.+--+|..||+.|..+. -+.+++-+
T Consensus 850 KqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIse 923 (1300)
T KOG1513|consen 850 KQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLISE 923 (1300)
T ss_pred HhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEehh
Confidence 35799999999999999999998765443 34577999999999999999998873 34444443
No 463
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=77.40 E-value=14 Score=41.11 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=38.3
Q ss_pred ccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEe
Q 004900 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (724)
Q Consensus 159 l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi 223 (724)
--++|+|-|+.+-+.+.-.-+.|.++.++... +.-.+.++++..+... ...+|...+.++
T Consensus 116 ~~~liLDnad~lrD~~a~ll~~l~~L~el~~~--~~i~iils~~~~e~~y---~~n~g~~~i~~l 175 (438)
T KOG2543|consen 116 KVFLILDNADALRDMDAILLQCLFRLYELLNE--PTIVIILSAPSCEKQY---LINTGTLEIVVL 175 (438)
T ss_pred eEEEEEcCHHhhhccchHHHHHHHHHHHHhCC--CceEEEEeccccHHHh---hcccCCCCceEE
Confidence 45799999999988775545555555555543 3446788998887643 233455555444
No 464
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=77.34 E-value=19 Score=37.74 Aligned_cols=91 Identities=18% Similarity=0.196 Sum_probs=55.3
Q ss_pred HHHHcC---CcEEEEcCCCchHHHH--HHHHHHcCCCeEEEEcCcHHHH--HHHHHHHHHcCCceeeecccc-------h
Q 004900 48 QAVLSG---RDCFCLMPTGGGKSMC--YQIPALAKPGIVLVVSPLIALM--ENQVIGLKEKGIAGEFLSSTQ-------T 113 (724)
Q Consensus 48 ~ail~g---~dvlv~apTGsGKTl~--~~lpal~~~~~vLVlsPl~aL~--~qqv~~l~~~gi~~~~l~s~~-------~ 113 (724)
.+.+.| +++++.++.|+|||-. .++......+.-||=++.-.|. .+.++.++....+-.+++-.. .
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~ 123 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTE 123 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHH
Confidence 445566 6899999999999964 3445555667777777776653 355566665555544443332 2
Q ss_pred HHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 114 MQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 114 ~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
...-+.++++.....|+--++|+|-
T Consensus 124 yk~LKs~LeGgle~~P~NvliyATS 148 (249)
T PF05673_consen 124 YKALKSVLEGGLEARPDNVLIYATS 148 (249)
T ss_pred HHHHHHHhcCccccCCCcEEEEEec
Confidence 3444455555555555555656553
No 465
>CHL00095 clpC Clp protease ATP binding subunit
Probab=77.28 E-value=14 Score=45.58 Aligned_cols=32 Identities=16% Similarity=0.268 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcC---CcEEEEcCCCchHHHHHHH
Q 004900 41 DKQLDAIQAVLSG---RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 41 ~~Q~eaI~ail~g---~dvlv~apTGsGKTl~~~l 72 (724)
.-+.+-+-.++.. +++++++|+|.|||.....
T Consensus 185 ~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~ 219 (821)
T CHL00095 185 EKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEG 219 (821)
T ss_pred HHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHH
Confidence 3333434444432 5899999999999987543
No 466
>PF05729 NACHT: NACHT domain
Probab=77.21 E-value=13 Score=35.19 Aligned_cols=15 Identities=27% Similarity=0.266 Sum_probs=12.9
Q ss_pred EEEEcCCCchHHHHH
Q 004900 56 CFCLMPTGGGKSMCY 70 (724)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (724)
+++.++.|+|||...
T Consensus 3 l~I~G~~G~GKStll 17 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL 17 (166)
T ss_pred EEEECCCCCChHHHH
Confidence 688999999999753
No 467
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=76.75 E-value=26 Score=34.26 Aligned_cols=53 Identities=28% Similarity=0.340 Sum_probs=33.9
Q ss_pred HhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChh
Q 004900 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (724)
Q Consensus 151 ~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~ 206 (724)
......+..++||+||+-....+|.- + -..+..+....|...-+.+|+--.|.
T Consensus 88 ~~~~~~~~~dLlVLDEi~~a~~~gli--~-~~~v~~ll~~rp~~~evIlTGr~~p~ 140 (159)
T cd00561 88 KEAIASGEYDLVILDEINYALGYGLL--D-VEEVVDLLKAKPEDLELVLTGRNAPK 140 (159)
T ss_pred HHHHhcCCCCEEEEechHhHhhCCCC--C-HHHHHHHHHcCCCCCEEEEECCCCCH
Confidence 33444567899999999988887742 2 23344455555655566777765544
No 468
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=76.41 E-value=16 Score=38.52 Aligned_cols=38 Identities=18% Similarity=0.203 Sum_probs=23.2
Q ss_pred HHcCC-cEEEEcCCCchHHHHHH-HHHH-cCCCeEEEEcCc
Q 004900 50 VLSGR-DCFCLMPTGGGKSMCYQ-IPAL-AKPGIVLVVSPL 87 (724)
Q Consensus 50 il~g~-dvlv~apTGsGKTl~~~-lpal-~~~~~vLVlsPl 87 (724)
+..|+ -+.++++-|+|||..-- +.+. .....++|+.|-
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~ 87 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDK 87 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecC
Confidence 34455 57789999999998765 2222 234444444433
No 469
>PRK04841 transcriptional regulator MalT; Provisional
Probab=76.01 E-value=38 Score=41.87 Aligned_cols=33 Identities=24% Similarity=0.069 Sum_probs=21.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEc
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVls 85 (724)
..+-++|.+|.|+|||....-..-..+ .+++++
T Consensus 31 ~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~ 63 (903)
T PRK04841 31 NYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYS 63 (903)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEe
Confidence 345689999999999986443332223 454553
No 470
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=75.98 E-value=2.6 Score=44.39 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=26.3
Q ss_pred HcCCcEEEEcCCCchHHHHH--HHHHHcCC-CeEEEEcCcHHH
Q 004900 51 LSGRDCFCLMPTGGGKSMCY--QIPALAKP-GIVLVVSPLIAL 90 (724)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~--~lpal~~~-~~vLVlsPl~aL 90 (724)
..+..+++.+|||+|||... ++..+... .++++|-...++
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHHHHHhhhccccccceEEeccccce
Confidence 34678999999999999743 23333344 667777665555
No 471
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=75.95 E-value=12 Score=40.82 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=27.1
Q ss_pred HHHHHHcC-----CcEEEEcCCCchHHH-HHHHHH-Hc-------CCCeEEEEcCcH
Q 004900 46 AIQAVLSG-----RDCFCLMPTGGGKSM-CYQIPA-LA-------KPGIVLVVSPLI 88 (724)
Q Consensus 46 aI~ail~g-----~dvlv~apTGsGKTl-~~~lpa-l~-------~~~~vLVlsPl~ 88 (724)
.+..++.| .-+.+.+|+|+|||. |.++.. .+ .++.+++|.---
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 35556654 346799999999995 444332 11 246788887443
No 472
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=75.94 E-value=43 Score=33.26 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=35.8
Q ss_pred HhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhH
Q 004900 151 KKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (724)
Q Consensus 151 ~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~ 208 (724)
......+.+++||+||+-....+|. -+. ..+..+....|.--=+.||+.-.|.-.
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gl--i~~-~~v~~lL~~rp~~~evVlTGR~~p~~l 144 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGY--LDV-EEVVEALQERPGHQHVIITGRGCPQDL 144 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCC--cCH-HHHHHHHHhCCCCCEEEEECCCCCHHH
Confidence 3444456799999999998888884 221 234445555565557788887665533
No 473
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=75.88 E-value=5.9 Score=41.95 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHH
Q 004900 39 FRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 39 lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~ 70 (724)
+.+.|.+.+..++.. .-+++.+|||+|||...
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 457788888776643 35789999999999753
No 474
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.87 E-value=15 Score=41.63 Aligned_cols=63 Identities=24% Similarity=0.214 Sum_probs=33.1
Q ss_pred HhhhhcCCccEEEEccccccccCCCCC--hHHHHH-HHHHHhh-----CCCCCEEEEeecCChhhHHHHHH
Q 004900 151 KKIHSRGLLNLVAIDEAHCISSWGHDF--RPSYRK-LSSLRNY-----LPDVPILALTATAAPKVQKDVME 213 (724)
Q Consensus 151 ~~~~~~~~l~lIVIDEAH~l~~~G~dF--rp~y~~-L~~l~~~-----~p~~pil~LSAT~~~~v~~di~~ 213 (724)
..........+++|||+|.+..--.+- ...-+. ...+... -++-.++.+.||--|...++-..
T Consensus 238 f~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~Dea~~ 308 (428)
T KOG0740|consen 238 FKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWELDEAAR 308 (428)
T ss_pred HHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHHHHHHH
Confidence 333344457889999999886421110 111111 1112221 23457889999977766554433
No 475
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=75.67 E-value=14 Score=45.12 Aligned_cols=118 Identities=21% Similarity=0.240 Sum_probs=67.0
Q ss_pred HHHHHHHHHHcCCCCCCH---HH----------HHHHHHHHc------CCcEEEEcCCCchHHHHHH---HHHHcCCCeE
Q 004900 24 EALVKLLRWHFGHAQFRD---KQ----------LDAIQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIV 81 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~---~Q----------~eaI~ail~------g~dvlv~apTGsGKTl~~~---lpal~~~~~v 81 (724)
+.....+.+.||-...-. .+ ...+..++. |.-+++.+|+|+|||...+ ..+...++.+
T Consensus 12 ~~~~~~~~~~~g~~~~~~l~~~~~~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v 91 (790)
T PRK09519 12 ELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVA 91 (790)
T ss_pred HHHHHHHHHHhccchhcccccccccCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 345556666777543322 11 223555665 2457799999999996432 3334567888
Q ss_pred EEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccE
Q 004900 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (724)
Q Consensus 82 LVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~l 161 (724)
++|..--.+.. +.++++|+... ++++..|... ...+..+......+.+++
T Consensus 92 ~yId~E~t~~~---~~A~~lGvDl~-------------------------~llv~~~~~~--E~~l~~i~~lv~~~~~~L 141 (790)
T PRK09519 92 AFIDAEHALDP---DYAKKLGVDTD-------------------------SLLVSQPDTG--EQALEIADMLIRSGALDI 141 (790)
T ss_pred EEECCccchhH---HHHHHcCCChh-------------------------HeEEecCCCH--HHHHHHHHHHhhcCCCeE
Confidence 88887766653 24555555321 1233333221 113333344444566999
Q ss_pred EEEccccccc
Q 004900 162 VAIDEAHCIS 171 (724)
Q Consensus 162 IVIDEAH~l~ 171 (724)
||||-+--+.
T Consensus 142 VVIDSI~aL~ 151 (790)
T PRK09519 142 VVIDSVAALV 151 (790)
T ss_pred EEEcchhhhc
Confidence 9999987665
No 476
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=75.24 E-value=4.7 Score=44.74 Aligned_cols=31 Identities=19% Similarity=-0.052 Sum_probs=19.9
Q ss_pred cEEEEcCCCchHHHHHHHHHHcCCCeEEEEc
Q 004900 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpal~~~~~vLVls 85 (724)
-+++.+|.|+|||+..-..+-..+-..|+++
T Consensus 150 gllL~GPPGcGKTllAraiA~elg~~~i~vs 180 (413)
T PLN00020 150 ILGIWGGKGQGKSFQCELVFKKMGIEPIVMS 180 (413)
T ss_pred EEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence 4678999999999976554433333334433
No 477
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=75.20 E-value=6.6 Score=39.38 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=14.0
Q ss_pred CcEEEEcCCCchHHHH
Q 004900 54 RDCFCLMPTGGGKSMC 69 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~ 69 (724)
+-+++.+|.|+|||..
T Consensus 21 ~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSL 36 (234)
T ss_dssp SEEEEEESTTSSHHHH
T ss_pred cEEEEEcCCcCCHHHH
Confidence 6788899999999974
No 478
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=75.16 E-value=2.3 Score=41.74 Aligned_cols=44 Identities=18% Similarity=0.098 Sum_probs=29.3
Q ss_pred CCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccC
Q 004900 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (724)
Q Consensus 128 ~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~ 173 (724)
....+|++++...+..|.....+. .. ...-.+|||||||.|.+.
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~-~~-~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLF-GI-DLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHC-T---CCCEEEEETTGGGCGGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhc-cc-cccCcEEEEecccchHHH
Confidence 345789999988888776554443 11 122468999999999764
No 479
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=75.13 E-value=23 Score=38.68 Aligned_cols=51 Identities=8% Similarity=0.042 Sum_probs=30.4
Q ss_pred cCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHH
Q 004900 156 RGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVM 212 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~ 212 (724)
.+...++||||||.+..-. ...|-+.....|+.-++.|+++-...+...|.
T Consensus 108 ~~~~kvviI~~a~~~~~~a------~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIr 158 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASA------ANSLLKFLEEPSGGTTAILLTENKHQILPTIL 158 (329)
T ss_pred ccCceEEEeehHhhhCHHH------HHHHHHHhcCCCCCceEEEEeCChHhCcHHHH
Confidence 3457899999999987522 23444455555554456666664444444443
No 480
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=74.83 E-value=16 Score=42.69 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=23.9
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecC
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATA 203 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~ 203 (724)
+...++||||||.+..- ....|.......|..-.+.|++|-
T Consensus 116 ~~~KVvIIDEad~Lt~~------A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE------AFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred CCeEEEEEECcccCCHH------HHHHHHHHHhhcCCceEEEEEECC
Confidence 45789999999998752 223444444444443334444443
No 481
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=74.67 E-value=6.7 Score=39.59 Aligned_cols=34 Identities=29% Similarity=0.167 Sum_probs=23.7
Q ss_pred EEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHH
Q 004900 56 CFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~a 89 (724)
.++.+|.++|||.-.+--+ ...+.+++|..|.+.
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 5789999999998533222 135677888888743
No 482
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=74.66 E-value=4.3 Score=49.67 Aligned_cols=70 Identities=17% Similarity=0.213 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHH-H-HHHH---cCCCeEEEEcCcHHHHHHHHHHHHHcCCcee
Q 004900 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY-Q-IPAL---AKPGIVLVVSPLIALMENQVIGLKEKGIAGE 106 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~-~-lpal---~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~ 106 (724)
-.++|-|.++|..-..-.++.+++|+|+|||-.. + +..+ ....+++|++....-+++-.+.+.+..+...
T Consensus 737 v~ft~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyhn~p~qrTlivthsnqaln~lfeKi~~~d~d~r 811 (1320)
T KOG1806|consen 737 VKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYHNSPNQRTLIVTHSNQALNQLFEKIMALDVDER 811 (1320)
T ss_pred hccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhhcCCCcceEEEEecccchhHHHHHHHhcccchh
Confidence 3568899999988777789999999999999532 2 2233 3467899999998888888877777655443
No 483
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=74.51 E-value=37 Score=37.79 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCCh
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~ 205 (724)
+...+|||||+|.+.. .....|-+..+..|...+++|++.-+.
T Consensus 140 ~~~kVviIDead~m~~------~aanaLLK~LEepp~~~~~IL~t~~~~ 182 (365)
T PRK07471 140 GGWRVVIVDTADEMNA------NAANALLKVLEEPPARSLFLLVSHAPA 182 (365)
T ss_pred CCCEEEEEechHhcCH------HHHHHHHHHHhcCCCCeEEEEEECCch
Confidence 4577999999998864 223345555555555555556554443
No 484
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=74.36 E-value=11 Score=41.53 Aligned_cols=42 Identities=14% Similarity=0.071 Sum_probs=26.0
Q ss_pred HHHHHcC-----CcEEEEcCCCchHHH-HHHHHHH-c-------CCCeEEEEcCcH
Q 004900 47 IQAVLSG-----RDCFCLMPTGGGKSM-CYQIPAL-A-------KPGIVLVVSPLI 88 (724)
Q Consensus 47 I~ail~g-----~dvlv~apTGsGKTl-~~~lpal-~-------~~~~vLVlsPl~ 88 (724)
+..++.| .=+.+.++.|+|||. |.++.+- + ..+.+++|.---
T Consensus 115 LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 115 LDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred HHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 4455544 345689999999995 4444321 1 136788887643
No 485
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.02 E-value=9.4 Score=37.44 Aligned_cols=37 Identities=19% Similarity=0.149 Sum_probs=23.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMEN 93 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~q 93 (724)
.++.+|.|+|||..|......-.+ .++++...+++.+
T Consensus 5 ~IvaG~NGsGKstv~~~~~~~~~~-~~~~VN~D~iA~~ 41 (187)
T COG4185 5 DIVAGPNGSGKSTVYASTLAPLLP-GIVFVNADEIAAQ 41 (187)
T ss_pred EEEecCCCCCceeeeeccchhhcC-CeEEECHHHHhhh
Confidence 467799999999877543222222 4566666666544
No 486
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=73.60 E-value=7.3 Score=46.08 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=59.7
Q ss_pred ceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc------cccCCCCcceEE
Q 004900 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG------MGIDRKDVRLVC 331 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g------~GIDip~V~~VI 331 (724)
+.+||.++++.-+++....|+..|+.+..+|++++..++..++.....|.++||+.|.--- .-+...++.+||
T Consensus 54 g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iV 132 (591)
T TIGR01389 54 GLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVA 132 (591)
T ss_pred CcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEE
Confidence 4578899999999988899999999999999999999999999999999999999885421 123334566666
No 487
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=73.27 E-value=14 Score=42.64 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=34.8
Q ss_pred cCCcEEEEcCCCchHHHHHH-H--HHHcC-CCeEEEEcCcHHHHHHHHHHHHHcCCc
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ-I--PALAK-PGIVLVVSPLIALMENQVIGLKEKGIA 104 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~-l--pal~~-~~~vLVlsPl~aL~~qqv~~l~~~gi~ 104 (724)
.|.-+++.+|+|+|||+..+ + -.+.+ +..+|+|+-- +-..+..+.+.++|..
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~G~~ 75 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSFGWD 75 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHcCCC
Confidence 35678999999999996433 3 22344 5678888743 4445666667777653
No 488
>CHL00095 clpC Clp protease ATP binding subunit
Probab=73.09 E-value=3.5 Score=50.79 Aligned_cols=31 Identities=35% Similarity=0.342 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHc-------C-----C---cEEEEcCCCchHHHHHH
Q 004900 41 DKQLDAIQAVLS-------G-----R---DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 41 ~~Q~eaI~ail~-------g-----~---dvlv~apTGsGKTl~~~ 71 (724)
-+|.+|+..+.. | + .+++.+|||+|||...-
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~ 557 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTK 557 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHH
Confidence 378888776631 1 1 36889999999997543
No 489
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=72.82 E-value=18 Score=40.41 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=25.4
Q ss_pred EEEEcCCCchHHHHHHHHH----Hc--CCCeEEEEcCcHHH
Q 004900 56 CFCLMPTGGGKSMCYQIPA----LA--KPGIVLVVSPLIAL 90 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lpa----l~--~~~~vLVlsPl~aL 90 (724)
.++.++.|||||.+..+-+ +. .+..++|+-|+..-
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~s 44 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNS 44 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhH
Confidence 5788999999997654333 23 56778888888663
No 490
>CHL00206 ycf2 Ycf2; Provisional
Probab=72.58 E-value=13 Score=49.22 Aligned_cols=58 Identities=19% Similarity=0.168 Sum_probs=33.7
Q ss_pred HHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCC-------CCCEEEEeecCChhhHH
Q 004900 148 SKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-------DVPILALTATAAPKVQK 209 (724)
Q Consensus 148 ~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-------~~pil~LSAT~~~~v~~ 209 (724)
..+........-+.|.|||.|.+.--. +.+..++.+...+. ...++.+.||-.|.+.+
T Consensus 1722 r~lFelARk~SPCIIFIDEIDaL~~~d----s~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LD 1786 (2281)
T CHL00206 1722 TLQFELAKAMSPCIIWIPNIHDLNVNE----SNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVD 1786 (2281)
T ss_pred HHHHHHHHHCCCeEEEEEchhhcCCCc----cceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCC
Confidence 333333334457899999999986432 11222444433332 34688899997776544
No 491
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=72.56 E-value=12 Score=41.16 Aligned_cols=18 Identities=33% Similarity=0.337 Sum_probs=15.0
Q ss_pred CCcEEEEcCCCchHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (724)
+..+++.+|||+|||...
T Consensus 122 ~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTL 139 (343)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 457889999999999753
No 492
>PF12846 AAA_10: AAA-like domain
Probab=72.10 E-value=4.6 Score=42.47 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=23.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~a 89 (724)
.+++++++||+|||......+ +..+..++|+=|.-+
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~ 40 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGD 40 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCch
Confidence 578999999999997654222 234555666655533
No 493
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=71.85 E-value=25 Score=36.90 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHH
Q 004900 54 RDCFCLMPTGGGKSMC 69 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~ 69 (724)
+.+++.+|+|+|||+.
T Consensus 190 rgvllygppg~gktml 205 (408)
T KOG0727|consen 190 RGVLLYGPPGTGKTML 205 (408)
T ss_pred cceEEeCCCCCcHHHH
Confidence 5689999999999984
No 494
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.79 E-value=21 Score=42.62 Aligned_cols=19 Identities=32% Similarity=0.315 Sum_probs=15.3
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lp 73 (724)
-+++.+|+|+|||.++.+.
T Consensus 112 illL~GP~GsGKTTl~~~l 130 (637)
T TIGR00602 112 ILLITGPSGCGKSTTIKIL 130 (637)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3889999999999865543
No 495
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=71.61 E-value=15 Score=37.13 Aligned_cols=40 Identities=18% Similarity=0.238 Sum_probs=25.5
Q ss_pred HHHHHHc-----CCcEEEEcCCCchHHHHHH-HHH--HcCCCeEEEEc
Q 004900 46 AIQAVLS-----GRDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVS 85 (724)
Q Consensus 46 aI~ail~-----g~dvlv~apTGsGKTl~~~-lpa--l~~~~~vLVls 85 (724)
.+..++. |.-+++.+++|+|||...+ +.. ...+..++++.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455554 3457899999999996433 322 23466777774
No 496
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=71.44 E-value=21 Score=36.93 Aligned_cols=30 Identities=37% Similarity=0.510 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHH---------------cCCCeEEEEc
Q 004900 56 CFCLMPTGGGKSMCYQIPAL---------------AKPGIVLVVS 85 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lpal---------------~~~~~vLVls 85 (724)
.++.+|.|+|||...+-.++ ..++.|++++
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~ 48 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLS 48 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEE
Confidence 57899999999975443232 1356788887
No 497
>PLN02483 serine palmitoyltransferase
Probab=71.22 E-value=78 Score=36.63 Aligned_cols=146 Identities=14% Similarity=0.198 Sum_probs=67.9
Q ss_pred chHHHHHHHHHHcCCC--C------CCHHH---HHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEc-CcHH
Q 004900 22 EKEALVKLLRWHFGHA--Q------FRDKQ---LDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS-PLIA 89 (724)
Q Consensus 22 ~~~~l~~~L~~~fG~~--~------lr~~Q---~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVls-Pl~a 89 (724)
..+...+++++ +|.. . ..+.. ++.+...+...+.++. ++| ..+....++++...+-.||+. |.-.
T Consensus 120 ~~~~~~~ai~~-~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~-~~G-~~an~~~i~al~~~Gd~Vi~d~~~h~ 196 (489)
T PLN02483 120 CTPRVIESLKK-YSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVF-GMG-YATNSTIIPALIGKGGLIISDSLNHN 196 (489)
T ss_pred HHHHHHHHHHH-hCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEE-CCH-HHHHHHHHHHhCCCCCEEEEcchhhH
Confidence 34677788877 4642 1 12222 3345555555565555 444 234445567776655444443 4433
Q ss_pred HHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCC-----CCccEEEeCcccccCh----hHHHHHHhhhhcCCcc
Q 004900 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGK-----PSLRLLYVTPELTATP----GFMSKLKKIHSRGLLN 160 (724)
Q Consensus 90 L~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~-----~~~~il~~TPE~i~T~----~~l~~L~~~~~~~~l~ 160 (724)
-+. ..++..|.....+...........+...+..+. +..++++++ |-+.++ ..+..+..+..... -
T Consensus 197 s~~---~~~~~~Ga~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livv-e~v~s~~G~~~~l~~I~~la~~~~-~ 271 (489)
T PLN02483 197 SIV---NGARGSGATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIV-EGIYSMEGELCKLPEIVAVCKKYK-A 271 (489)
T ss_pred HHH---HHHHHcCCeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEE-CCCCCCCCcccCHHHHHHHHHHcC-C
Confidence 332 234556777666543322211111111111111 122444433 222222 13344444433332 3
Q ss_pred EEEEccccccccCCC
Q 004900 161 LVAIDEAHCISSWGH 175 (724)
Q Consensus 161 lIVIDEAH~l~~~G~ 175 (724)
+||+||||.+...|.
T Consensus 272 ~livDEa~s~g~~G~ 286 (489)
T PLN02483 272 YVYLDEAHSIGAVGK 286 (489)
T ss_pred EEEEECcCccCccCC
Confidence 789999998765553
No 498
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=71.15 E-value=94 Score=31.89 Aligned_cols=40 Identities=8% Similarity=0.050 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 244 ~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
...+.+..++...+ .+..|||.+...+..+...|.+.|+.
T Consensus 162 ~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~~l~~~g~~ 201 (269)
T cd06281 162 SGFDATRALLALPD-RPTAIIAGGTQVLVGVLRALREAGLR 201 (269)
T ss_pred HHHHHHHHHHcCCC-CCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 34555666676543 35577888888888888888887754
No 499
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=71.11 E-value=9.2 Score=43.25 Aligned_cols=49 Identities=27% Similarity=0.329 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHcCCC--CCCHHHH-HH----HHHHHcCCcEEEEcCCCchHHHHHH
Q 004900 23 KEALVKLLRWHFGHA--QFRDKQL-DA----IQAVLSGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 23 ~~~l~~~L~~~fG~~--~lr~~Q~-ea----I~ail~g~dvlv~apTGsGKTl~~~ 71 (724)
.+|+.+.|-+.+|+. .+..-|+ .. ++.+-++.+++..+|+|+|||-.|.
T Consensus 172 ~dEWid~LlrSiG~~P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 172 LEEWIDVLIRSIGYEPEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred HHHHHHHHHHhcCCCcccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHH
Confidence 367888888888985 3333221 11 2445577899999999999996654
No 500
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=71.07 E-value=24 Score=32.76 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=13.7
Q ss_pred EEEEcCCCchHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 56 vlv~apTGsGKTl~~~l 72 (724)
+++++|+|+|||.....
T Consensus 2 ii~~G~pgsGKSt~a~~ 18 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKR 18 (143)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 57899999999985443
Done!