Query 004900
Match_columns 724
No_of_seqs 371 out of 2836
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 09:14:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v1x_A ATP-dependent DNA helic 100.0 4.8E-71 1.6E-75 640.4 40.9 413 13-440 19-435 (591)
2 1oyw_A RECQ helicase, ATP-depe 100.0 8.8E-70 3E-74 622.2 40.9 406 15-440 2-407 (523)
3 2db3_A ATP-dependent RNA helic 100.0 9.8E-49 3.4E-53 437.9 36.6 339 14-370 55-413 (434)
4 3sqw_A ATP-dependent RNA helic 100.0 1E-48 3.5E-53 453.0 30.7 346 21-377 27-410 (579)
5 3i5x_A ATP-dependent RNA helic 100.0 9.3E-49 3.2E-53 450.9 27.8 345 22-377 79-461 (563)
6 2i4i_A ATP-dependent RNA helic 100.0 1.9E-47 6.4E-52 421.7 33.6 347 14-376 14-394 (417)
7 2j0s_A ATP-dependent RNA helic 100.0 6.2E-47 2.1E-51 417.4 36.0 347 13-377 35-395 (410)
8 1s2m_A Putative ATP-dependent 100.0 2.4E-46 8E-51 411.0 35.7 345 14-378 20-378 (400)
9 1xti_A Probable ATP-dependent 100.0 4.1E-46 1.4E-50 407.1 36.5 344 15-375 8-368 (391)
10 3eiq_A Eukaryotic initiation f 100.0 2E-46 7E-51 412.6 30.3 347 14-377 39-399 (414)
11 3fht_A ATP-dependent RNA helic 100.0 1.7E-45 5.8E-50 404.6 35.6 345 11-377 21-392 (412)
12 3pey_A ATP-dependent RNA helic 100.0 2.1E-45 7.3E-50 400.6 35.6 340 14-375 4-367 (395)
13 1hv8_A Putative ATP-dependent 100.0 5.2E-45 1.8E-49 393.6 36.4 341 15-377 6-357 (367)
14 2z0m_A 337AA long hypothetical 100.0 2.3E-45 7.9E-50 392.2 29.5 326 23-375 2-332 (337)
15 1fuu_A Yeast initiation factor 100.0 1.6E-46 5.3E-51 410.4 19.4 346 12-375 18-376 (394)
16 3oiy_A Reverse gyrase helicase 100.0 2.4E-44 8.1E-49 398.5 30.1 329 23-375 7-373 (414)
17 4gl2_A Interferon-induced heli 100.0 8.4E-45 2.9E-49 428.2 20.5 378 38-425 7-586 (699)
18 3fmp_B ATP-dependent RNA helic 100.0 6.8E-45 2.3E-49 410.9 15.4 340 13-374 90-456 (479)
19 4a4z_A Antiviral helicase SKI2 100.0 2.1E-42 7.3E-47 421.1 30.0 392 21-438 23-576 (997)
20 2ykg_A Probable ATP-dependent 100.0 1.9E-42 6.4E-47 408.0 24.3 388 29-439 5-587 (696)
21 3fho_A ATP-dependent RNA helic 100.0 5.8E-43 2E-47 398.9 15.4 341 17-376 121-482 (508)
22 4a2p_A RIG-I, retinoic acid in 100.0 7E-40 2.4E-44 374.2 26.9 318 35-370 4-513 (556)
23 4a2w_A RIG-I, retinoic acid in 100.0 7.5E-40 2.6E-44 397.9 27.4 320 32-369 242-753 (936)
24 2p6r_A Afuhel308 helicase; pro 100.0 2.2E-39 7.5E-44 383.1 26.9 328 17-368 3-391 (702)
25 3l9o_A ATP-dependent RNA helic 100.0 1.6E-39 5.4E-44 399.2 25.6 336 17-377 164-610 (1108)
26 3tbk_A RIG-I helicase domain; 100.0 2E-39 6.9E-44 369.6 24.3 314 38-371 4-513 (555)
27 4ddu_A Reverse gyrase; topoiso 100.0 1.1E-38 3.8E-43 391.5 32.5 292 24-337 65-388 (1104)
28 2va8_A SSO2462, SKI2-type heli 100.0 2.7E-38 9.4E-43 374.4 32.8 324 16-366 9-409 (715)
29 1wp9_A ATP-dependent RNA helic 100.0 8.3E-38 2.8E-42 347.5 34.2 314 38-369 9-479 (494)
30 2zj8_A DNA helicase, putative 100.0 9.1E-39 3.1E-43 378.9 25.9 325 17-368 3-390 (720)
31 4a2q_A RIG-I, retinoic acid in 100.0 3E-38 1E-42 378.5 27.4 323 30-370 240-754 (797)
32 2xgj_A ATP-dependent RNA helic 100.0 1.2E-37 4.1E-42 379.5 31.3 322 31-377 80-512 (1010)
33 1gm5_A RECG; helicase, replica 100.0 1.4E-38 4.7E-43 377.3 21.9 321 21-366 352-698 (780)
34 1gku_B Reverse gyrase, TOP-RG; 100.0 2.5E-38 8.6E-43 388.1 17.4 324 24-376 44-465 (1054)
35 2eyq_A TRCF, transcription-rep 100.0 7.6E-36 2.6E-40 368.4 37.1 322 18-365 584-922 (1151)
36 1tf5_A Preprotein translocase 100.0 5.4E-36 1.9E-40 350.4 32.0 322 29-367 75-547 (844)
37 2oca_A DAR protein, ATP-depend 100.0 8.1E-37 2.8E-41 347.3 19.1 300 38-364 113-454 (510)
38 2fwr_A DNA repair protein RAD2 100.0 1.9E-36 6.3E-41 341.1 17.1 288 38-361 93-448 (472)
39 4f92_B U5 small nuclear ribonu 100.0 1.2E-34 4.3E-39 367.5 32.8 328 35-378 923-1321(1724)
40 2jlq_A Serine protease subunit 100.0 3.5E-36 1.2E-40 338.2 15.6 284 35-364 1-310 (451)
41 4f92_B U5 small nuclear ribonu 100.0 1.8E-34 6.1E-39 366.1 26.6 338 23-377 63-485 (1724)
42 1yks_A Genome polyprotein [con 100.0 8.3E-36 2.9E-40 334.1 11.8 277 49-374 4-311 (440)
43 2wv9_A Flavivirin protease NS2 100.0 6.2E-36 2.1E-40 350.3 10.7 286 38-372 215-543 (673)
44 2whx_A Serine protease/ntpase/ 100.0 5.1E-35 1.8E-39 340.1 13.9 308 20-375 155-491 (618)
45 2fsf_A Preprotein translocase 100.0 3.3E-33 1.1E-37 326.1 28.5 326 28-367 65-585 (853)
46 3h1t_A Type I site-specific re 100.0 2.2E-33 7.6E-38 325.1 25.7 303 38-363 178-556 (590)
47 1nkt_A Preprotein translocase 100.0 1.1E-32 3.6E-37 322.2 30.1 326 28-367 102-619 (922)
48 2xau_A PRE-mRNA-splicing facto 100.0 2.2E-33 7.6E-38 334.0 24.4 327 14-367 71-445 (773)
49 2z83_A Helicase/nucleoside tri 100.0 1.6E-34 5.4E-39 325.4 12.1 269 47-365 15-313 (459)
50 3dmq_A RNA polymerase-associat 100.0 2.2E-32 7.5E-37 333.1 30.2 316 37-363 152-611 (968)
51 3o8b_A HCV NS3 protease/helica 100.0 4.3E-34 1.5E-38 331.2 13.4 277 38-368 217-517 (666)
52 2v6i_A RNA helicase; membrane, 100.0 1.7E-33 5.7E-38 314.6 16.2 266 52-363 1-288 (431)
53 3rc3_A ATP-dependent RNA helic 100.0 1.1E-31 3.8E-36 313.8 26.0 288 48-378 150-457 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 1.4E-30 4.8E-35 295.2 27.7 299 37-361 36-447 (500)
55 1z3i_X Similar to RAD54-like; 100.0 2.6E-28 8.9E-33 285.7 34.6 310 38-361 55-522 (644)
56 3jux_A Protein translocase sub 100.0 6.7E-28 2.3E-32 276.5 35.5 324 27-367 65-589 (822)
57 3mwy_W Chromo domain-containin 100.0 7.6E-28 2.6E-32 288.3 25.1 311 37-361 235-678 (800)
58 1c4o_A DNA nucleotide excision 99.9 3.1E-26 1.1E-30 268.6 27.8 206 160-374 327-559 (664)
59 3fe2_A Probable ATP-dependent 99.9 3.4E-25 1.2E-29 227.7 20.8 195 13-224 27-236 (242)
60 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 4.1E-25 1.4E-29 268.5 25.0 314 20-355 247-695 (1038)
61 2d7d_A Uvrabc system protein B 99.9 2.1E-24 7E-29 253.1 27.5 117 257-374 444-565 (661)
62 2hjv_A ATP-dependent RNA helic 99.9 6.3E-25 2.1E-29 212.6 19.2 151 226-377 4-154 (163)
63 3iuy_A Probable ATP-dependent 99.9 5.1E-25 1.7E-29 223.9 17.9 192 15-223 19-226 (228)
64 1q0u_A Bstdead; DEAD protein, 99.9 1.3E-24 4.4E-29 219.7 18.7 199 15-231 4-217 (219)
65 2pl3_A Probable ATP-dependent 99.9 2.8E-24 9.5E-29 219.6 20.4 192 13-224 23-231 (236)
66 2rb4_A ATP-dependent RNA helic 99.9 1.9E-24 6.6E-29 211.5 18.4 148 230-377 6-159 (175)
67 3ly5_A ATP-dependent RNA helic 99.9 3.1E-24 1E-28 223.8 18.9 183 15-214 52-253 (262)
68 1vec_A ATP-dependent RNA helic 99.9 3.8E-24 1.3E-28 213.4 18.3 189 15-222 3-204 (206)
69 3ber_A Probable ATP-dependent 99.9 5.6E-24 1.9E-28 220.1 20.1 192 14-224 42-246 (249)
70 3eaq_A Heat resistant RNA depe 99.9 2.7E-24 9.3E-29 217.4 16.5 137 242-378 15-151 (212)
71 1fuk_A Eukaryotic initiation f 99.9 3E-24 1E-28 208.1 15.1 135 243-377 15-149 (165)
72 1t5i_A C_terminal domain of A 99.9 5.6E-24 1.9E-28 208.1 17.1 134 243-376 16-150 (172)
73 1t6n_A Probable ATP-dependent 99.9 9E-24 3.1E-28 213.3 18.6 193 15-223 14-218 (220)
74 1qde_A EIF4A, translation init 99.9 9.9E-24 3.4E-28 213.3 18.7 194 12-224 11-215 (224)
75 2oxc_A Probable ATP-dependent 99.9 7.3E-24 2.5E-28 216.1 17.6 194 13-224 22-227 (230)
76 2gxq_A Heat resistant RNA depe 99.9 1.8E-23 6.3E-28 208.4 19.7 190 16-223 2-203 (207)
77 2jgn_A DBX, DDX3, ATP-dependen 99.9 8.3E-24 2.9E-28 209.4 15.6 147 229-376 17-164 (185)
78 3bor_A Human initiation factor 99.9 2E-23 7E-28 213.9 18.3 195 13-224 28-233 (237)
79 3dkp_A Probable ATP-dependent 99.9 1E-23 3.5E-28 216.6 16.1 190 21-225 35-240 (245)
80 1wrb_A DJVLGB; RNA helicase, D 99.9 7.9E-24 2.7E-28 218.6 13.9 196 13-224 21-238 (253)
81 2p6n_A ATP-dependent RNA helic 99.9 3.7E-23 1.3E-27 205.9 16.4 145 229-375 27-172 (191)
82 3fmo_B ATP-dependent RNA helic 99.9 3.7E-23 1.3E-27 220.0 16.9 190 13-224 90-296 (300)
83 3i32_A Heat resistant RNA depe 99.9 1.1E-22 3.8E-27 216.4 17.1 136 243-378 13-148 (300)
84 2yjt_D ATP-dependent RNA helic 99.8 6.7E-25 2.3E-29 213.9 0.0 146 230-375 2-147 (170)
85 2ipc_A Preprotein translocase 99.9 1.3E-19 4.5E-24 211.5 33.2 135 26-171 68-215 (997)
86 2vl7_A XPD; helicase, unknown 99.9 2.4E-20 8.3E-25 213.9 22.9 315 33-364 3-520 (540)
87 3crv_A XPD/RAD3 related DNA he 99.8 1E-17 3.5E-22 192.6 26.7 315 35-364 1-530 (551)
88 3b6e_A Interferon-induced heli 99.7 3.4E-18 1.1E-22 170.7 10.7 161 34-202 29-216 (216)
89 1z5z_A Helicase of the SNF2/RA 99.7 4.5E-17 1.5E-21 170.7 11.5 119 243-361 95-218 (271)
90 1rif_A DAR protein, DNA helica 99.7 7.5E-17 2.6E-21 169.3 12.3 145 38-207 113-266 (282)
91 4a15_A XPD helicase, ATP-depen 99.7 1.5E-15 5.1E-20 176.7 23.1 162 195-364 377-583 (620)
92 2fz4_A DNA repair protein RAD2 99.7 1.5E-16 5.2E-21 163.3 13.1 139 38-207 93-232 (237)
93 3llm_A ATP-dependent RNA helic 99.6 1.5E-14 5E-19 147.9 13.9 152 38-207 61-222 (235)
94 1w36_D RECD, exodeoxyribonucle 98.1 1.3E-05 4.5E-10 92.9 13.5 77 23-99 134-217 (608)
95 4b3f_X DNA-binding protein smu 97.8 6.3E-05 2.2E-09 87.7 10.9 71 37-107 188-262 (646)
96 2gk6_A Regulator of nonsense t 97.6 0.00052 1.8E-08 79.7 15.3 70 36-105 178-251 (624)
97 2xzl_A ATP-dependent helicase 97.4 0.00097 3.3E-08 79.5 14.2 70 36-105 358-431 (802)
98 2wjy_A Regulator of nonsense t 97.4 0.00098 3.3E-08 79.5 14.1 70 36-105 354-427 (800)
99 3upu_A ATP-dependent DNA helic 97.1 0.0025 8.4E-08 71.1 12.6 62 34-95 21-91 (459)
100 3e1s_A Exodeoxyribonuclease V, 97.0 0.003 1E-07 72.6 12.4 58 38-95 189-249 (574)
101 3hgt_A HDA1 complex subunit 3; 96.8 0.0043 1.5E-07 65.8 10.0 121 244-369 109-241 (328)
102 3lfu_A DNA helicase II; SF1 he 96.8 0.16 5.5E-06 58.5 24.2 63 37-101 8-77 (647)
103 3ec2_A DNA replication protein 95.8 0.097 3.3E-06 49.8 12.8 30 41-70 17-55 (180)
104 2o0j_A Terminase, DNA packagin 95.2 0.17 5.7E-06 55.1 13.6 63 38-100 163-230 (385)
105 3vkw_A Replicase large subunit 95.1 0.05 1.7E-06 60.2 9.1 43 56-100 164-206 (446)
106 2qby_B CDC6 homolog 3, cell di 94.3 0.26 8.9E-06 52.4 12.1 18 54-71 46-63 (384)
107 2chg_A Replication factor C sm 94.0 0.28 9.5E-06 47.1 10.7 17 54-70 39-55 (226)
108 3te6_A Regulatory protein SIR3 93.9 0.54 1.8E-05 49.7 13.4 19 53-71 45-63 (318)
109 2r6a_A DNAB helicase, replicat 93.9 0.21 7.3E-06 55.3 10.7 125 46-172 192-327 (454)
110 3cpe_A Terminase, DNA packagin 93.9 0.35 1.2E-05 55.5 12.7 63 38-100 163-230 (592)
111 2q6t_A DNAB replication FORK h 93.7 0.27 9.1E-06 54.3 11.0 125 46-172 189-324 (444)
112 3vfd_A Spastin; ATPase, microt 93.7 0.25 8.5E-06 53.4 10.6 33 53-85 148-180 (389)
113 4a1f_A DNAB helicase, replicat 93.3 0.21 7.1E-06 53.3 8.8 153 46-202 35-205 (338)
114 3syl_A Protein CBBX; photosynt 92.8 0.76 2.6E-05 47.3 12.3 18 54-71 68-85 (309)
115 3h4m_A Proteasome-activating n 92.7 0.2 6.8E-06 51.2 7.6 58 14-74 13-72 (285)
116 2b8t_A Thymidine kinase; deoxy 92.7 0.08 2.7E-06 53.2 4.4 37 52-88 11-50 (223)
117 1gm5_A RECG; helicase, replica 92.7 0.16 5.5E-06 60.3 7.6 77 258-334 417-498 (780)
118 2kjq_A DNAA-related protein; s 92.7 0.12 4.2E-06 48.2 5.4 19 52-70 35-53 (149)
119 1jbk_A CLPB protein; beta barr 92.7 0.83 2.8E-05 42.5 11.3 17 54-70 44-60 (195)
120 2zpa_A Uncharacterized protein 92.7 0.19 6.5E-06 58.3 7.9 54 38-91 175-230 (671)
121 3eie_A Vacuolar protein sortin 92.5 0.45 1.6E-05 49.9 10.2 60 11-74 11-72 (322)
122 1a5t_A Delta prime, HOLB; zinc 92.5 0.22 7.6E-06 52.7 7.8 34 39-72 3-43 (334)
123 1d2n_A N-ethylmaleimide-sensit 92.4 0.33 1.1E-05 49.4 8.6 19 54-72 65-83 (272)
124 2p65_A Hypothetical protein PF 92.2 0.21 7.2E-06 46.8 6.4 18 53-70 43-60 (187)
125 1sxj_A Activator 1 95 kDa subu 92.1 0.37 1.3E-05 54.3 9.3 43 158-204 148-190 (516)
126 1xwi_A SKD1 protein; VPS4B, AA 92.0 1 3.5E-05 47.3 12.2 57 14-74 8-66 (322)
127 2orw_A Thymidine kinase; TMTK, 91.8 0.64 2.2E-05 44.8 9.4 37 52-88 2-41 (184)
128 3bh0_A DNAB-like replicative h 91.7 0.44 1.5E-05 50.0 8.8 122 46-172 57-195 (315)
129 2v1u_A Cell division control p 91.7 0.89 3E-05 48.0 11.3 19 53-71 44-62 (387)
130 1l8q_A Chromosomal replication 91.6 0.33 1.1E-05 50.8 7.8 19 53-71 37-55 (324)
131 1sxj_B Activator 1 37 kDa subu 91.4 0.36 1.2E-05 49.9 7.7 17 55-71 44-60 (323)
132 1fnn_A CDC6P, cell division co 91.4 1.1 3.8E-05 47.3 11.8 17 55-71 46-62 (389)
133 2qz4_A Paraplegin; AAA+, SPG7, 91.4 0.96 3.3E-05 45.2 10.7 20 53-72 39-58 (262)
134 2zan_A Vacuolar protein sortin 91.4 0.5 1.7E-05 52.1 9.2 32 54-85 168-200 (444)
135 3u61_B DNA polymerase accessor 91.3 0.8 2.7E-05 47.7 10.4 14 158-171 105-118 (324)
136 2r2a_A Uncharacterized protein 91.3 0.26 8.8E-06 48.5 6.1 18 55-72 7-24 (199)
137 3cf0_A Transitional endoplasmi 91.1 1.4 4.6E-05 45.8 11.8 59 13-74 10-70 (301)
138 3bos_A Putative DNA replicatio 90.9 0.42 1.4E-05 46.8 7.3 19 52-70 51-69 (242)
139 3b9p_A CG5977-PA, isoform A; A 90.9 1.7 5.8E-05 44.4 12.3 22 53-74 54-75 (297)
140 2j9r_A Thymidine kinase; TK1, 90.9 0.53 1.8E-05 46.8 7.9 36 54-89 29-67 (214)
141 1njg_A DNA polymerase III subu 90.8 2.2 7.4E-05 41.1 12.3 16 55-70 47-62 (250)
142 2qp9_X Vacuolar protein sortin 90.7 0.66 2.3E-05 49.5 9.1 20 54-73 85-104 (355)
143 2gno_A DNA polymerase III, gam 90.7 0.7 2.4E-05 48.4 9.1 46 157-208 81-126 (305)
144 2qby_A CDC6 homolog 1, cell di 90.6 1.4 4.6E-05 46.4 11.4 19 53-71 45-63 (386)
145 3oiy_A Reverse gyrase helicase 90.4 0.37 1.3E-05 52.0 7.0 76 257-332 63-145 (414)
146 1xx6_A Thymidine kinase; NESG, 90.4 0.29 9.8E-06 47.8 5.5 36 53-88 8-46 (191)
147 2w58_A DNAI, primosome compone 90.4 1.3 4.3E-05 42.6 10.1 18 54-71 55-72 (202)
148 3co5_A Putative two-component 90.2 0.61 2.1E-05 42.7 7.3 20 51-70 25-44 (143)
149 3pvs_A Replication-associated 89.9 0.38 1.3E-05 53.3 6.5 21 54-74 51-71 (447)
150 1uaa_A REP helicase, protein ( 89.4 0.35 1.2E-05 56.2 6.1 62 38-101 2-70 (673)
151 4b4t_J 26S protease regulatory 89.2 0.83 2.8E-05 49.8 8.4 59 12-74 142-203 (405)
152 2cvh_A DNA repair and recombin 89.1 0.69 2.4E-05 44.8 7.1 33 53-85 20-52 (220)
153 1g5t_A COB(I)alamin adenosyltr 89.1 0.8 2.7E-05 44.9 7.4 132 54-207 29-166 (196)
154 1pjr_A PCRA; DNA repair, DNA r 88.8 0.59 2E-05 54.9 7.5 63 37-101 10-79 (724)
155 3d8b_A Fidgetin-like protein 1 88.6 1.5 5.3E-05 46.6 10.0 32 53-84 117-148 (357)
156 3u4q_A ATP-dependent helicase/ 88.5 0.58 2E-05 58.4 7.4 61 38-100 10-79 (1232)
157 2dr3_A UPF0273 protein PH0284; 88.3 3 0.0001 40.9 11.4 51 52-103 22-75 (247)
158 3pfi_A Holliday junction ATP-d 88.2 1.8 6.2E-05 45.1 10.1 19 54-72 56-74 (338)
159 1xp8_A RECA protein, recombina 88.0 2.4 8.3E-05 45.5 11.0 86 1-87 4-111 (366)
160 3kl4_A SRP54, signal recogniti 87.4 5.1 0.00017 44.0 13.3 46 55-100 99-149 (433)
161 3dm5_A SRP54, signal recogniti 87.1 6.2 0.00021 43.5 13.7 45 55-99 102-151 (443)
162 1lv7_A FTSH; alpha/beta domain 87.0 3.1 0.00011 41.6 10.6 19 54-72 46-64 (257)
163 4b4t_L 26S protease subunit RP 87.0 1.2 4.2E-05 49.0 8.1 60 12-74 175-236 (437)
164 1iqp_A RFCS; clamp loader, ext 86.8 3.1 0.0001 42.7 10.8 44 158-207 110-153 (327)
165 4b4t_H 26S protease regulatory 86.7 2.5 8.5E-05 46.8 10.3 60 12-74 203-264 (467)
166 1w5s_A Origin recognition comp 86.7 5 0.00017 42.7 12.7 17 54-70 51-69 (412)
167 2orv_A Thymidine kinase; TP4A 86.6 1.2 4.1E-05 44.9 7.0 37 53-89 19-58 (234)
168 3bgw_A DNAB-like replicative h 86.5 4.6 0.00016 44.4 12.5 151 46-202 186-359 (444)
169 3ndq_A Transcription elongatio 86.4 0.52 1.8E-05 41.8 3.8 78 549-628 13-90 (108)
170 2z4s_A Chromosomal replication 86.4 1.7 5.9E-05 47.7 9.0 18 54-71 131-148 (440)
171 2hjv_A ATP-dependent RNA helic 86.2 3.8 0.00013 38.0 10.1 60 77-138 34-93 (163)
172 1sxj_C Activator 1 40 kDa subu 85.7 4.5 0.00016 42.3 11.5 42 159-206 111-152 (340)
173 1sxj_D Activator 1 41 kDa subu 85.4 7.3 0.00025 40.4 12.9 17 54-70 59-75 (353)
174 2rb4_A ATP-dependent RNA helic 85.4 2.1 7.2E-05 40.3 7.9 79 57-138 12-92 (175)
175 1jr3_A DNA polymerase III subu 85.0 5.7 0.00019 41.6 11.9 43 157-205 118-160 (373)
176 3hu3_A Transitional endoplasmi 84.4 1.5 5.1E-05 49.0 7.3 27 54-80 239-265 (489)
177 3t15_A Ribulose bisphosphate c 84.4 1.4 4.7E-05 45.6 6.6 19 54-72 37-55 (293)
178 3eaq_A Heat resistant RNA depe 83.9 7.6 0.00026 37.8 11.5 62 75-138 28-89 (212)
179 1v5w_A DMC1, meiotic recombina 83.8 2.2 7.6E-05 45.2 8.1 43 46-88 110-166 (343)
180 2w0m_A SSO2452; RECA, SSPF, un 83.6 8.6 0.00029 37.0 11.8 34 52-85 22-58 (235)
181 2eyq_A TRCF, transcription-rep 83.6 3.6 0.00012 50.9 10.8 76 257-332 651-731 (1151)
182 3e2i_A Thymidine kinase; Zn-bi 83.6 1.4 4.8E-05 43.9 5.9 38 52-89 27-67 (219)
183 3ber_A Probable ATP-dependent 83.3 3.6 0.00012 41.2 9.0 57 257-317 110-170 (249)
184 4ddu_A Reverse gyrase; topoiso 83.3 1.2 4E-05 55.0 6.3 76 257-332 120-202 (1104)
185 2lw4_A Transcription elongatio 83.3 0.82 2.8E-05 40.8 3.6 78 549-628 9-86 (113)
186 1n0w_A DNA repair protein RAD5 83.3 8.4 0.00029 37.5 11.6 35 52-86 23-66 (243)
187 1t5i_A C_terminal domain of A 83.2 4.8 0.00016 37.8 9.4 60 77-138 30-89 (172)
188 2p6n_A ATP-dependent RNA helic 83.2 5.3 0.00018 38.4 9.8 73 63-138 39-112 (191)
189 1fuk_A Eukaryotic initiation f 83.1 2.6 8.9E-05 39.2 7.4 60 77-138 29-88 (165)
190 2zts_A Putative uncharacterize 82.8 0.42 1.4E-05 47.3 1.7 49 53-102 30-82 (251)
191 1cr0_A DNA primase/helicase; R 82.8 6.5 0.00022 40.1 11.0 35 52-86 34-72 (296)
192 1r6b_X CLPA protein; AAA+, N-t 82.7 7.2 0.00025 45.7 12.6 19 53-71 207-225 (758)
193 1q57_A DNA primase/helicase; d 82.3 3.7 0.00013 45.7 9.5 115 53-171 242-367 (503)
194 2dme_A PHD finger protein 3; P 82.1 2 6.8E-05 38.7 5.8 80 548-628 8-89 (120)
195 1vma_A Cell division protein F 81.8 12 0.0004 39.0 12.5 31 55-85 106-139 (306)
196 1t6n_A Probable ATP-dependent 81.7 3.3 0.00011 40.1 7.9 55 259-316 83-142 (220)
197 4b4t_I 26S protease regulatory 81.6 2.2 7.6E-05 46.8 7.0 59 11-74 175-237 (437)
198 2qen_A Walker-type ATPase; unk 81.2 16 0.00056 37.4 13.5 18 53-70 31-48 (350)
199 1ixz_A ATP-dependent metallopr 81.2 4.2 0.00014 40.5 8.6 57 12-72 10-68 (254)
200 3cmu_A Protein RECA, recombina 81.0 2.7 9.3E-05 54.5 8.5 95 47-171 1415-1518(2050)
201 2jgn_A DBX, DDX3, ATP-dependen 80.2 2.9 9.8E-05 40.0 6.6 60 77-138 45-104 (185)
202 3cf2_A TER ATPase, transitiona 79.9 2.3 8E-05 50.4 7.0 66 13-79 472-537 (806)
203 1nlf_A Regulatory protein REPA 79.8 11 0.00037 38.2 11.3 22 50-71 27-48 (279)
204 1oyw_A RECQ helicase, ATP-depe 79.6 2.6 8.8E-05 47.4 7.0 73 259-331 66-144 (523)
205 2v1x_A ATP-dependent DNA helic 79.3 2.3 8E-05 48.6 6.6 60 258-317 84-145 (591)
206 2oxc_A Probable ATP-dependent 78.5 2.4 8.3E-05 41.6 5.7 56 257-317 91-151 (230)
207 3hws_A ATP-dependent CLP prote 78.4 5.1 0.00018 42.4 8.6 52 20-75 3-73 (363)
208 3fe2_A Probable ATP-dependent 77.9 3.9 0.00013 40.4 7.1 55 258-316 102-160 (242)
209 1qvr_A CLPB protein; coiled co 77.9 6.5 0.00022 46.9 10.1 18 54-71 192-209 (854)
210 2ce7_A Cell division protein F 77.8 5.6 0.00019 44.2 8.9 55 13-72 11-68 (476)
211 2z43_A DNA repair and recombin 77.5 6.7 0.00023 40.9 9.1 43 46-88 95-151 (324)
212 2ehv_A Hypothetical protein PH 76.8 0.85 2.9E-05 45.1 1.7 34 52-85 29-66 (251)
213 3po3_S Transcription elongatio 76.0 2.4 8.3E-05 40.8 4.6 83 543-628 8-91 (178)
214 3i32_A Heat resistant RNA depe 75.5 8.1 0.00028 40.1 8.9 62 76-139 26-87 (300)
215 2yhs_A FTSY, cell division pro 74.9 23 0.00078 39.5 12.7 30 55-84 295-327 (503)
216 1iy2_A ATP-dependent metallopr 74.8 6.9 0.00024 39.6 8.1 56 13-72 35-92 (278)
217 3cf2_A TER ATPase, transitiona 72.8 7.6 0.00026 46.0 8.7 19 54-72 239-257 (806)
218 3iuy_A Probable ATP-dependent 72.7 5 0.00017 39.1 6.2 56 257-316 93-151 (228)
219 1vec_A ATP-dependent RNA helic 72.5 5.6 0.00019 37.8 6.4 55 258-316 71-130 (206)
220 3n70_A Transport activator; si 72.4 2.6 8.7E-05 38.5 3.7 21 52-72 23-43 (145)
221 2px0_A Flagellar biosynthesis 72.0 18 0.00062 37.3 10.5 33 53-85 105-141 (296)
222 3tb6_A Arabinose metabolism tr 71.9 60 0.0021 32.0 14.4 39 246-284 187-226 (298)
223 2gxq_A Heat resistant RNA depe 71.9 6.7 0.00023 37.2 6.8 56 257-316 71-128 (207)
224 1e9r_A Conjugal transfer prote 71.7 2.1 7.1E-05 46.7 3.4 40 52-91 52-94 (437)
225 3o74_A Fructose transport syst 71.7 76 0.0026 30.8 17.0 177 90-283 20-204 (272)
226 3hr8_A Protein RECA; alpha and 71.6 6.3 0.00022 42.1 7.0 45 45-89 47-100 (356)
227 2pl3_A Probable ATP-dependent 71.1 9.3 0.00032 37.3 7.8 55 257-316 96-154 (236)
228 2i4i_A ATP-dependent RNA helic 71.0 10 0.00034 40.3 8.6 60 77-138 275-334 (417)
229 3io5_A Recombination and repai 70.8 5.1 0.00018 42.3 5.9 46 55-103 30-80 (333)
230 1qvr_A CLPB protein; coiled co 70.7 4.7 0.00016 48.2 6.4 17 55-71 590-606 (854)
231 3bor_A Human initiation factor 70.4 4.4 0.00015 39.9 5.2 57 257-316 97-157 (237)
232 2zr9_A Protein RECA, recombina 68.9 16 0.00056 38.6 9.6 43 45-87 47-98 (349)
233 2vhj_A Ntpase P4, P4; non- hyd 68.8 8.6 0.00029 40.6 7.1 20 52-71 122-141 (331)
234 3fht_A ATP-dependent RNA helic 68.6 10 0.00036 39.9 8.0 60 77-138 265-324 (412)
235 1u94_A RECA protein, recombina 68.3 16 0.00054 38.9 9.3 64 24-87 15-100 (356)
236 2x8a_A Nuclear valosin-contain 68.3 2.6 8.7E-05 43.2 2.9 56 13-72 5-63 (274)
237 3ly5_A ATP-dependent RNA helic 68.1 13 0.00044 37.3 8.2 70 258-331 126-206 (262)
238 2d7d_A Uvrabc system protein B 68.1 54 0.0019 37.7 14.5 82 77-170 444-525 (661)
239 1hv8_A Putative ATP-dependent 67.8 12 0.00039 38.7 8.0 60 77-138 237-296 (367)
240 1xti_A Probable ATP-dependent 67.8 26 0.0009 36.5 10.9 61 76-138 248-308 (391)
241 3pey_A ATP-dependent RNA helic 67.4 12 0.0004 39.1 8.0 60 77-138 242-301 (395)
242 3e70_C DPA, signal recognition 67.2 38 0.0013 35.5 11.8 49 159-211 212-261 (328)
243 1s2m_A Putative ATP-dependent 67.0 12 0.0004 39.5 8.0 60 77-138 257-316 (400)
244 1qde_A EIF4A, translation init 66.9 4.2 0.00014 39.4 4.1 55 257-316 81-139 (224)
245 3b85_A Phosphate starvation-in 66.6 5.6 0.00019 39.0 4.9 35 36-70 5-39 (208)
246 3cmw_A Protein RECA, recombina 65.7 20 0.00069 45.9 10.8 89 53-171 732-823 (1706)
247 1ofh_A ATP-dependent HSL prote 64.3 12 0.0004 37.9 7.1 20 53-72 50-69 (310)
248 1rj9_A FTSY, signal recognitio 63.9 46 0.0016 34.4 11.6 33 53-85 102-137 (304)
249 2r8r_A Sensor protein; KDPD, P 63.8 59 0.002 32.3 11.8 17 55-71 8-24 (228)
250 2r44_A Uncharacterized protein 63.7 7.8 0.00027 40.1 5.7 26 47-72 40-65 (331)
251 2j0s_A ATP-dependent RNA helic 63.5 14 0.00049 39.0 7.9 60 77-138 275-334 (410)
252 1um8_A ATP-dependent CLP prote 62.9 20 0.0007 37.8 8.9 22 53-74 72-93 (376)
253 4a2p_A RIG-I, retinoic acid in 62.6 7.6 0.00026 42.9 5.7 71 258-332 55-136 (556)
254 3lda_A DNA repair protein RAD5 62.6 35 0.0012 36.9 10.7 40 47-86 167-220 (400)
255 1sky_E F1-ATPase, F1-ATP synth 62.1 27 0.00093 38.6 9.8 26 46-71 141-169 (473)
256 1ls1_A Signal recognition part 61.7 98 0.0033 31.6 13.6 33 53-85 98-133 (295)
257 3egc_A Putative ribose operon 61.6 1.2E+02 0.0042 29.8 14.2 176 90-284 26-211 (291)
258 3hjh_A Transcription-repair-co 61.6 13 0.00043 41.5 7.1 50 52-101 13-62 (483)
259 3dbi_A Sugar-binding transcrip 61.2 1.4E+02 0.0049 30.1 18.3 41 243-284 227-267 (338)
260 2xxa_A Signal recognition part 61.2 83 0.0028 34.2 13.6 41 55-95 102-148 (433)
261 2i1q_A DNA repair and recombin 61.2 16 0.00054 37.8 7.5 25 46-70 86-115 (322)
262 1wrb_A DJVLGB; RNA helicase, D 60.8 12 0.00041 37.0 6.2 56 258-317 100-159 (253)
263 2qgz_A Helicase loader, putati 60.7 10 0.00035 39.4 5.9 18 53-70 152-169 (308)
264 1q0u_A Bstdead; DEAD protein, 60.1 3.7 0.00013 39.8 2.2 55 258-316 72-134 (219)
265 3cmu_A Protein RECA, recombina 59.3 46 0.0016 43.4 12.4 97 45-171 369-474 (2050)
266 3huu_A Transcription regulator 58.9 1.5E+02 0.005 29.5 16.1 172 92-284 47-227 (305)
267 2p5t_B PEZT; postsegregational 58.6 58 0.002 32.2 11.0 18 55-72 34-51 (253)
268 1c4o_A DNA nucleotide excision 58.0 29 0.00098 40.1 9.6 82 76-169 437-518 (664)
269 3gk5_A Uncharacterized rhodane 57.6 6.6 0.00023 33.9 3.2 37 257-293 54-90 (108)
270 3eme_A Rhodanese-like domain p 57.4 6.6 0.00023 33.4 3.1 36 257-292 55-90 (103)
271 2db3_A ATP-dependent RNA helic 57.1 20 0.00069 38.7 7.7 59 78-138 300-358 (434)
272 3cmw_A Protein RECA, recombina 57.0 17 0.00058 46.6 7.9 97 46-172 1418-1523(1706)
273 2j37_W Signal recognition part 57.0 87 0.003 34.8 13.0 41 55-95 103-148 (504)
274 3foj_A Uncharacterized protein 56.7 6.7 0.00023 33.2 3.1 36 257-292 55-90 (100)
275 2oap_1 GSPE-2, type II secreti 56.7 9.3 0.00032 42.8 5.0 31 39-69 245-276 (511)
276 2ffh_A Protein (FFH); SRP54, s 56.7 80 0.0027 34.3 12.3 41 55-95 100-145 (425)
277 2yjt_D ATP-dependent RNA helic 61.1 2.4 8.1E-05 39.8 0.0 58 78-137 30-87 (170)
278 2v9p_A Replication protein E1; 56.0 6.3 0.00021 41.2 3.2 33 52-85 125-158 (305)
279 1p9r_A General secretion pathw 55.3 10 0.00035 41.3 5.0 31 39-69 151-183 (418)
280 4b4t_K 26S protease regulatory 55.1 5.8 0.0002 43.5 2.9 60 12-74 166-227 (428)
281 3nbx_X ATPase RAVA; AAA+ ATPas 55.1 11 0.00037 42.2 5.2 29 44-72 32-60 (500)
282 1pqv_S STP-alpha, transcriptio 55.0 12 0.00042 39.0 5.3 76 549-627 145-221 (309)
283 3tbk_A RIG-I helicase domain; 54.8 8.5 0.00029 42.4 4.3 71 258-332 52-133 (555)
284 3eiq_A Eukaryotic initiation f 54.2 14 0.00049 38.9 5.9 59 78-138 280-338 (414)
285 3g5j_A Putative ATP/GTP bindin 54.1 9.9 0.00034 33.5 3.9 36 259-294 90-126 (134)
286 3sqw_A ATP-dependent RNA helic 53.9 23 0.0008 39.8 7.8 61 77-139 287-350 (579)
287 3dkp_A Probable ATP-dependent 53.8 4.7 0.00016 39.8 1.8 56 258-316 98-157 (245)
288 3i5x_A ATP-dependent RNA helic 53.7 24 0.00082 39.3 7.8 61 77-139 338-401 (563)
289 1kgd_A CASK, peripheral plasma 53.6 7.8 0.00027 36.5 3.2 21 52-72 4-24 (180)
290 2oca_A DAR protein, ATP-depend 53.3 80 0.0027 34.4 12.0 99 77-192 346-444 (510)
291 1wp9_A ATP-dependent RNA helic 52.8 34 0.0012 36.3 8.6 60 77-138 360-427 (494)
292 1fuu_A Yeast initiation factor 52.7 22 0.00076 37.1 7.0 55 257-316 88-146 (394)
293 4a2q_A RIG-I, retinoic acid in 52.6 15 0.00051 43.3 6.1 71 258-332 296-377 (797)
294 4b4t_M 26S protease regulatory 51.9 9.6 0.00033 41.8 4.0 69 12-84 175-246 (434)
295 3iwh_A Rhodanese-like domain p 51.8 9.3 0.00032 32.9 3.1 36 257-292 55-90 (103)
296 3dmq_A RNA polymerase-associat 51.8 31 0.0011 41.7 8.9 61 77-137 502-563 (968)
297 2gza_A Type IV secretion syste 51.5 9.1 0.00031 40.7 3.7 21 50-70 172-192 (361)
298 1gku_B Reverse gyrase, TOP-RG; 51.3 13 0.00044 45.5 5.4 73 258-332 99-181 (1054)
299 1gvn_B Zeta; postsegregational 51.2 48 0.0016 33.7 9.1 32 55-86 35-66 (287)
300 3dr5_A Putative O-methyltransf 51.1 1.8E+02 0.006 28.1 13.9 71 34-104 32-107 (221)
301 2bjv_A PSP operon transcriptio 51.1 10 0.00036 37.8 3.9 23 52-74 28-50 (265)
302 3l49_A ABC sugar (ribose) tran 51.0 1.3E+02 0.0044 29.5 12.2 41 243-283 173-215 (291)
303 3vaa_A Shikimate kinase, SK; s 51.0 8.9 0.0003 36.6 3.2 21 52-72 24-44 (199)
304 4fcw_A Chaperone protein CLPB; 50.8 7.2 0.00025 39.8 2.7 17 55-71 49-65 (311)
305 4ag6_A VIRB4 ATPase, type IV s 50.4 14 0.00048 39.4 5.0 38 52-89 34-74 (392)
306 1wv9_A Rhodanese homolog TT165 50.2 9.3 0.00032 31.9 2.8 35 259-293 54-88 (94)
307 3fmo_B ATP-dependent RNA helic 50.2 7.5 0.00026 40.1 2.7 68 258-332 162-241 (300)
308 1lvg_A Guanylate kinase, GMP k 50.1 9.3 0.00032 36.7 3.2 20 52-71 3-22 (198)
309 3a8t_A Adenylate isopentenyltr 49.7 9 0.00031 40.6 3.2 18 54-71 41-58 (339)
310 2chq_A Replication factor C sm 49.4 17 0.0006 36.7 5.4 52 6-71 5-56 (319)
311 2iks_A DNA-binding transcripti 49.1 2E+02 0.0069 28.2 14.3 41 243-284 182-222 (293)
312 3tau_A Guanylate kinase, GMP k 48.9 10 0.00034 36.7 3.2 21 52-72 7-27 (208)
313 2jtq_A Phage shock protein E; 48.6 26 0.00089 28.4 5.3 37 256-293 39-76 (85)
314 2eyu_A Twitching motility prot 48.5 8.4 0.00029 39.1 2.7 20 51-70 23-42 (261)
315 3trf_A Shikimate kinase, SK; a 48.4 10 0.00035 35.4 3.2 20 53-72 5-24 (185)
316 3foz_A TRNA delta(2)-isopenten 47.5 12 0.00039 39.4 3.6 17 56-72 13-29 (316)
317 3exa_A TRNA delta(2)-isopenten 47.1 11 0.00039 39.5 3.4 18 55-72 5-22 (322)
318 2fsx_A RV0390, COG0607: rhodan 46.6 19 0.00064 32.8 4.5 37 257-293 79-116 (148)
319 3gv0_A Transcriptional regulat 46.5 1.6E+02 0.0053 29.0 12.0 41 243-284 173-213 (288)
320 3jvd_A Transcriptional regulat 46.3 2.2E+02 0.0076 28.8 13.5 40 243-284 217-256 (333)
321 3qk7_A Transcriptional regulat 46.1 2.3E+02 0.0078 27.9 16.4 178 89-284 27-212 (294)
322 1qhx_A CPT, protein (chloramph 46.0 17 0.00057 33.6 4.2 21 53-73 3-23 (178)
323 3flh_A Uncharacterized protein 45.9 10 0.00035 33.5 2.5 37 257-293 70-108 (124)
324 2pt7_A CAG-ALFA; ATPase, prote 45.9 11 0.00036 39.7 3.0 21 50-70 168-188 (330)
325 3uk6_A RUVB-like 2; hexameric 45.7 10 0.00035 39.7 2.9 19 54-72 71-89 (368)
326 2j41_A Guanylate kinase; GMP, 45.6 11 0.00037 35.8 2.9 22 51-72 4-25 (207)
327 1kag_A SKI, shikimate kinase I 45.6 19 0.00065 33.0 4.5 22 53-74 4-25 (173)
328 3tr0_A Guanylate kinase, GMP k 45.5 12 0.00042 35.4 3.2 20 52-71 6-25 (205)
329 3hix_A ALR3790 protein; rhodan 45.4 12 0.0004 32.1 2.8 36 257-292 51-87 (106)
330 1j8m_F SRP54, signal recogniti 45.1 1.2E+02 0.0042 30.9 11.0 41 55-95 100-145 (297)
331 1tf7_A KAIC; homohexamer, hexa 45.0 1E+02 0.0035 34.2 11.2 36 52-87 280-318 (525)
332 3nwn_A Kinesin-like protein KI 44.1 14 0.0005 39.3 3.8 25 46-70 96-122 (359)
333 3lw7_A Adenylate kinase relate 44.1 9.9 0.00034 34.5 2.2 18 56-73 4-21 (179)
334 1tf5_A Preprotein translocase 44.0 41 0.0014 39.9 7.8 69 257-331 123-208 (844)
335 3iij_A Coilin-interacting nucl 43.8 15 0.00051 34.1 3.5 21 52-72 10-30 (180)
336 1qxn_A SUD, sulfide dehydrogen 43.5 16 0.00053 33.0 3.4 36 257-292 81-117 (137)
337 1zp6_A Hypothetical protein AT 43.4 11 0.00037 35.3 2.5 21 52-72 8-28 (191)
338 1u0j_A DNA replication protein 43.3 20 0.0007 36.6 4.6 45 23-71 72-122 (267)
339 3nhv_A BH2092 protein; alpha-b 43.2 14 0.00047 33.7 3.0 37 257-293 71-109 (144)
340 1bg2_A Kinesin; motor protein, 43.1 16 0.00056 38.4 3.9 25 46-70 69-95 (325)
341 2ze6_A Isopentenyl transferase 43.1 12 0.00043 37.4 3.0 15 56-70 4-18 (253)
342 1z6g_A Guanylate kinase; struc 43.1 15 0.00051 35.8 3.5 21 51-71 21-41 (218)
343 2fsf_A Preprotein translocase 43.0 31 0.0011 40.9 6.6 55 257-317 114-172 (853)
344 3a00_A Guanylate kinase, GMP k 42.5 15 0.00052 34.6 3.3 18 54-71 2-19 (186)
345 4akg_A Glutathione S-transfera 42.5 28 0.00095 46.8 6.7 50 23-74 891-944 (2695)
346 3crm_A TRNA delta(2)-isopenten 42.0 16 0.00053 38.5 3.6 18 55-72 7-24 (323)
347 2bdt_A BH3686; alpha-beta prot 41.9 21 0.00073 33.3 4.3 20 55-74 4-23 (189)
348 3ney_A 55 kDa erythrocyte memb 41.9 15 0.00052 35.7 3.2 20 52-71 18-37 (197)
349 2k0z_A Uncharacterized protein 41.6 23 0.00077 30.4 4.1 38 256-293 54-91 (110)
350 1y63_A LMAJ004144AAA protein; 41.6 15 0.00053 34.4 3.2 23 52-74 9-31 (184)
351 2qmh_A HPR kinase/phosphorylas 41.5 12 0.00042 36.7 2.5 18 52-69 33-50 (205)
352 1hqc_A RUVB; extended AAA-ATPa 41.3 21 0.00073 36.4 4.5 19 54-72 39-57 (324)
353 2qor_A Guanylate kinase; phosp 41.1 17 0.00057 34.8 3.4 21 51-71 10-30 (204)
354 1kht_A Adenylate kinase; phosp 41.0 15 0.00053 34.0 3.1 20 53-72 3-22 (192)
355 1gmx_A GLPE protein; transfera 40.9 14 0.00048 31.6 2.6 37 257-293 57-94 (108)
356 3k4h_A Putative transcriptiona 40.8 2.6E+02 0.009 27.1 18.9 178 91-284 32-217 (292)
357 2y65_A Kinesin, kinesin heavy 40.7 18 0.00063 38.6 3.9 25 46-70 76-102 (365)
358 1sxj_E Activator 1 40 kDa subu 40.7 24 0.00083 36.5 4.9 50 8-71 4-54 (354)
359 2vvg_A Kinesin-2; motor protei 40.6 19 0.00064 38.3 3.9 25 46-70 81-107 (350)
360 1znw_A Guanylate kinase, GMP k 40.6 16 0.00056 35.0 3.3 23 49-71 16-38 (207)
361 3dc4_A Kinesin-like protein NO 40.5 17 0.00058 38.6 3.6 25 46-70 86-112 (344)
362 3d1p_A Putative thiosulfate su 40.4 17 0.00058 32.6 3.1 37 257-293 90-127 (139)
363 4a14_A Kinesin, kinesin-like p 40.4 19 0.00065 38.2 4.0 25 46-70 75-101 (344)
364 3kb2_A SPBC2 prophage-derived 40.3 15 0.00053 33.4 2.9 18 55-72 3-20 (173)
365 1nkt_A Preprotein translocase 40.0 53 0.0018 39.2 7.9 70 256-331 150-236 (922)
366 1tq1_A AT5G66040, senescence-a 39.9 15 0.00051 32.7 2.6 37 257-293 81-118 (129)
367 2h58_A Kinesin-like protein KI 39.8 20 0.00068 37.8 4.0 26 45-70 71-98 (330)
368 1goj_A Kinesin, kinesin heavy 39.7 18 0.00061 38.6 3.6 25 46-70 72-98 (355)
369 3b6e_A Interferon-induced heli 39.7 15 0.00053 34.7 2.9 57 257-317 81-141 (216)
370 2l82_A Designed protein OR32; 39.6 63 0.0022 28.1 6.3 50 262-311 6-55 (162)
371 2v6i_A RNA helicase; membrane, 39.5 37 0.0013 36.8 6.2 57 77-139 170-226 (431)
372 3nwj_A ATSK2; P loop, shikimat 39.4 20 0.00067 36.1 3.7 23 52-74 47-69 (250)
373 1tue_A Replication protein E1; 39.4 29 0.00099 34.2 4.8 45 23-70 27-75 (212)
374 2r62_A Cell division protease 39.2 11 0.00038 37.5 1.8 19 54-72 45-63 (268)
375 3d3q_A TRNA delta(2)-isopenten 39.1 19 0.00064 38.2 3.6 17 55-71 9-25 (340)
376 2hhg_A Hypothetical protein RP 39.0 15 0.00051 32.8 2.5 37 257-293 85-122 (139)
377 2zfi_A Kinesin-like protein KI 39.0 20 0.0007 38.3 3.9 26 45-70 80-107 (366)
378 1ojl_A Transcriptional regulat 38.8 16 0.00053 37.8 2.9 21 52-72 24-44 (304)
379 3b6u_A Kinesin-like protein KI 38.8 20 0.00067 38.5 3.8 25 46-70 93-119 (372)
380 3lre_A Kinesin-like protein KI 38.6 19 0.00064 38.4 3.6 25 46-70 97-123 (355)
381 2ewv_A Twitching motility prot 38.4 14 0.00049 39.4 2.6 19 52-70 135-153 (372)
382 3gbj_A KIF13B protein; kinesin 38.3 20 0.00068 38.1 3.7 26 45-70 83-110 (354)
383 2nr8_A Kinesin-like protein KI 38.3 20 0.00069 38.2 3.8 25 46-70 95-121 (358)
384 3h75_A Periplasmic sugar-bindi 38.3 3.3E+02 0.011 27.5 17.2 42 242-284 189-230 (350)
385 4eun_A Thermoresistant glucoki 38.2 18 0.00063 34.4 3.2 21 52-72 28-48 (200)
386 3vkg_A Dynein heavy chain, cyt 38.2 33 0.0011 46.7 6.4 62 24-87 875-946 (3245)
387 1v8k_A Kinesin-like protein KI 38.0 21 0.00072 38.8 3.9 26 45-70 145-172 (410)
388 3mwy_W Chromo domain-containin 37.9 1.8E+02 0.006 34.1 12.2 143 63-220 554-703 (800)
389 3cm0_A Adenylate kinase; ATP-b 37.7 14 0.00048 34.4 2.2 21 52-72 3-23 (186)
390 1t5c_A CENP-E protein, centrom 37.6 20 0.00068 38.1 3.6 25 46-70 69-95 (349)
391 4etp_A Kinesin-like protein KA 37.5 22 0.00074 38.6 3.9 26 46-71 132-159 (403)
392 3m9w_A D-xylose-binding peripl 37.4 3.1E+02 0.011 27.0 17.0 182 89-284 19-213 (313)
393 1ly1_A Polynucleotide kinase; 37.3 18 0.00063 33.1 3.0 17 56-72 5-21 (181)
394 1g41_A Heat shock protein HSLU 37.2 35 0.0012 37.5 5.6 22 53-74 50-71 (444)
395 1vee_A Proline-rich protein fa 37.2 37 0.0013 30.2 4.9 37 257-293 73-110 (134)
396 3jvv_A Twitching mobility prot 37.2 17 0.00057 38.7 2.9 19 52-70 122-140 (356)
397 1x88_A Kinesin-like protein KI 37.0 20 0.00069 38.2 3.5 26 45-70 79-106 (359)
398 2wbe_C Bipolar kinesin KRP-130 36.9 21 0.0007 38.3 3.6 25 46-70 92-118 (373)
399 1yks_A Genome polyprotein [con 36.9 23 0.0008 38.5 4.1 57 77-139 176-232 (440)
400 1knq_A Gluconate kinase; ALFA/ 36.8 17 0.00059 33.5 2.6 20 53-72 8-27 (175)
401 2heh_A KIF2C protein; kinesin, 36.7 22 0.00074 38.4 3.7 25 46-70 126-152 (387)
402 2c9o_A RUVB-like 1; hexameric 36.7 18 0.0006 39.7 3.1 19 54-72 64-82 (456)
403 4gp7_A Metallophosphoesterase; 36.7 14 0.00047 34.5 2.0 21 52-72 8-28 (171)
404 4gl2_A Interferon-induced heli 36.6 27 0.00094 40.0 4.9 59 78-138 400-472 (699)
405 2z0m_A 337AA long hypothetical 36.4 38 0.0013 34.3 5.5 55 258-317 56-114 (337)
406 1ex7_A Guanylate kinase; subst 36.3 17 0.00057 35.0 2.5 17 54-70 2-18 (186)
407 2owm_A Nckin3-434, related to 35.7 23 0.00078 38.9 3.8 25 46-70 128-154 (443)
408 3g0t_A Putative aminotransfera 35.4 4E+02 0.014 27.6 14.1 146 19-173 55-229 (437)
409 3jy6_A Transcriptional regulat 35.3 3.1E+02 0.011 26.4 20.0 176 91-284 26-206 (276)
410 2ipc_A Preprotein translocase 35.0 53 0.0018 39.3 6.9 58 254-317 116-177 (997)
411 3u06_A Protein claret segregat 34.9 24 0.00083 38.3 3.8 26 45-70 129-156 (412)
412 2cy8_A D-phgat, D-phenylglycin 34.9 1.9E+02 0.0064 30.8 11.1 39 130-169 201-245 (453)
413 3tqc_A Pantothenate kinase; bi 34.8 49 0.0017 34.6 6.0 15 56-70 95-109 (321)
414 3rq1_A Aminotransferase class 34.8 3.8E+02 0.013 27.7 13.4 146 19-170 54-230 (418)
415 2lci_A Protein OR36; structura 34.5 2.1E+02 0.0072 24.2 12.2 107 196-316 3-109 (134)
416 3lnc_A Guanylate kinase, GMP k 34.4 17 0.00057 35.5 2.2 20 52-71 26-45 (231)
417 3uie_A Adenylyl-sulfate kinase 34.1 20 0.0007 34.0 2.7 20 52-71 24-43 (200)
418 2ykg_A Probable ATP-dependent 33.8 32 0.0011 39.4 4.8 70 259-332 62-142 (696)
419 3cob_A Kinesin heavy chain-lik 33.6 22 0.00076 38.0 3.2 25 46-70 71-97 (369)
420 3t61_A Gluconokinase; PSI-biol 33.6 22 0.00077 33.6 2.9 19 54-72 19-37 (202)
421 1z3i_X Similar to RAD54-like; 33.5 3.6E+02 0.012 30.5 13.7 79 62-140 396-478 (644)
422 3bil_A Probable LACI-family tr 33.4 4E+02 0.014 27.0 16.7 39 243-284 228-266 (348)
423 1in4_A RUVB, holliday junction 33.4 23 0.00079 36.9 3.2 19 54-72 52-70 (334)
424 1f2t_A RAD50 ABC-ATPase; DNA d 33.3 19 0.00065 32.9 2.3 15 56-70 26-40 (149)
425 3k1j_A LON protease, ATP-depen 33.2 33 0.0011 38.9 4.8 28 47-74 54-81 (604)
426 2va8_A SSO2462, SKI2-type heli 33.2 1.2E+02 0.0041 34.8 9.7 66 72-139 246-347 (715)
427 1tev_A UMP-CMP kinase; ploop, 33.2 21 0.00071 33.2 2.6 20 53-72 3-22 (196)
428 2wv9_A Flavivirin protease NS2 33.1 48 0.0017 38.3 6.2 57 77-139 409-465 (673)
429 1qkk_A DCTD, C4-dicarboxylate 33.1 2.4E+02 0.0082 24.4 11.2 45 158-209 47-91 (155)
430 3t0q_A AGR253WP; kinesin, alph 33.0 21 0.00073 37.8 2.9 26 46-71 77-104 (349)
431 1ry6_A Internal kinesin; kines 33.0 27 0.00093 37.2 3.7 25 47-71 76-103 (360)
432 1s96_A Guanylate kinase, GMP k 32.9 25 0.00085 34.5 3.2 21 51-71 14-34 (219)
433 3ilm_A ALR3790 protein; rhodan 32.9 24 0.00082 32.0 2.9 36 257-292 55-91 (141)
434 1zd8_A GTP:AMP phosphotransfer 32.9 23 0.00078 34.4 3.0 22 52-73 6-27 (227)
435 1g8p_A Magnesium-chelatase 38 32.8 26 0.00089 36.1 3.6 20 53-72 45-64 (350)
436 3eph_A TRNA isopentenyltransfe 32.6 21 0.00071 38.8 2.7 16 56-71 5-20 (409)
437 1cke_A CK, MSSA, protein (cyti 32.4 24 0.00081 34.0 3.0 20 54-73 6-25 (227)
438 3b8x_A WBDK, pyridoxamine 5-ph 32.3 4.3E+02 0.015 27.0 13.3 139 23-171 14-167 (390)
439 3miz_A Putative transcriptiona 32.1 3.7E+02 0.013 26.3 13.3 37 247-284 186-222 (301)
440 3bfn_A Kinesin-like protein KI 32.1 22 0.00076 38.3 2.8 29 42-70 78-116 (388)
441 3a4m_A L-seryl-tRNA(SEC) kinas 32.0 39 0.0013 33.7 4.6 19 54-72 5-23 (260)
442 3qf7_A RAD50; ABC-ATPase, ATPa 32.0 19 0.00064 38.3 2.3 16 55-70 25-40 (365)
443 3dl0_A Adenylate kinase; phosp 31.7 33 0.0011 32.7 3.9 19 55-73 2-20 (216)
444 1via_A Shikimate kinase; struc 31.7 28 0.00094 32.1 3.2 20 54-73 5-24 (175)
445 2ay1_A Aroat, aromatic amino a 31.6 3.1E+02 0.011 28.0 11.9 147 21-172 44-215 (394)
446 3hv2_A Response regulator/HD d 31.5 2.6E+02 0.0087 24.2 10.2 46 158-210 58-103 (153)
447 1f9v_A Kinesin-like protein KA 31.5 22 0.00074 37.8 2.6 26 46-71 76-103 (347)
448 3kta_A Chromosome segregation 31.4 29 0.00099 32.1 3.3 18 55-72 28-45 (182)
449 2c95_A Adenylate kinase 1; tra 31.3 26 0.0009 32.6 3.0 21 52-72 8-28 (196)
450 3h5o_A Transcriptional regulat 31.1 4.2E+02 0.014 26.6 20.0 180 89-284 79-264 (339)
451 3fb4_A Adenylate kinase; psych 31.0 26 0.0009 33.4 3.0 18 55-72 2-19 (216)
452 1zuh_A Shikimate kinase; alpha 31.0 27 0.00093 31.9 3.0 21 54-74 8-28 (168)
453 3kke_A LACI family transcripti 30.8 4E+02 0.014 26.2 16.9 179 89-284 32-222 (303)
454 3pxg_A Negative regulator of g 30.7 43 0.0015 36.7 5.0 19 53-71 201-219 (468)
455 3mm4_A Histidine kinase homolo 30.5 3.3E+02 0.011 25.3 12.1 51 53-103 20-86 (206)
456 2qxy_A Response regulator; reg 30.5 2.5E+02 0.0085 23.8 11.5 45 157-209 47-91 (142)
457 2fna_A Conserved hypothetical 30.5 49 0.0017 33.7 5.2 17 54-70 31-47 (357)
458 3eod_A Protein HNR; response r 30.1 2.4E+02 0.0082 23.4 11.8 48 157-211 50-97 (130)
459 1urh_A 3-mercaptopyruvate sulf 30.1 51 0.0017 33.1 5.1 38 257-294 229-267 (280)
460 3h14_A Aminotransferase, class 30.0 4.5E+02 0.015 26.8 12.9 146 19-174 42-209 (391)
461 3asz_A Uridine kinase; cytidin 30.0 25 0.00084 33.5 2.6 19 53-71 6-24 (211)
462 2rhm_A Putative kinase; P-loop 30.0 27 0.00092 32.5 2.8 20 53-72 5-24 (193)
463 1ye8_A Protein THEP1, hypothet 29.9 29 0.00099 32.8 3.0 16 55-70 2-17 (178)
464 3c8u_A Fructokinase; YP_612366 29.9 23 0.0008 33.9 2.4 18 53-70 22-39 (208)
465 3bs4_A Uncharacterized protein 29.8 56 0.0019 33.1 5.3 58 47-105 10-75 (260)
466 2v54_A DTMP kinase, thymidylat 29.8 31 0.0011 32.4 3.2 21 52-72 3-23 (204)
467 1aky_A Adenylate kinase; ATP:A 29.6 31 0.0011 33.2 3.2 20 53-72 4-23 (220)
468 1c9k_A COBU, adenosylcobinamid 29.6 33 0.0011 32.8 3.4 32 56-88 2-33 (180)
469 2iyv_A Shikimate kinase, SK; t 29.6 34 0.0011 31.7 3.4 19 54-72 3-21 (184)
470 2bwj_A Adenylate kinase 5; pho 29.5 36 0.0012 31.7 3.6 21 52-72 11-31 (199)
471 4a74_A DNA repair and recombin 29.5 25 0.00085 33.7 2.5 21 52-72 24-44 (231)
472 2qt1_A Nicotinamide riboside k 29.4 34 0.0012 32.4 3.5 20 53-72 21-40 (207)
473 4a2w_A RIG-I, retinoic acid in 29.4 22 0.00076 42.8 2.5 71 258-332 296-377 (936)
474 1e6c_A Shikimate kinase; phosp 29.4 30 0.001 31.5 3.0 19 54-72 3-21 (173)
475 3t18_A Aminotransferase class 29.4 4.9E+02 0.017 26.8 13.9 147 19-171 53-230 (413)
476 1zak_A Adenylate kinase; ATP:A 29.3 32 0.0011 33.2 3.3 20 53-72 5-24 (222)
477 3b9q_A Chloroplast SRP recepto 29.2 40 0.0014 34.8 4.1 32 54-85 101-135 (302)
478 1nks_A Adenylate kinase; therm 28.9 28 0.00097 32.1 2.7 17 55-71 3-19 (194)
479 3zvl_A Bifunctional polynucleo 28.9 1.1E+02 0.0037 32.9 7.8 17 56-72 261-277 (416)
480 2r2n_A Kynurenine/alpha-aminoa 28.8 1.9E+02 0.0067 30.3 9.8 107 63-173 115-238 (425)
481 1qf9_A UMP/CMP kinase, protein 28.7 29 0.001 32.0 2.8 18 55-72 8-25 (194)
482 1nij_A Hypothetical protein YJ 28.6 32 0.0011 35.6 3.4 32 56-87 7-39 (318)
483 3h1t_A Type I site-specific re 28.5 1.8E+02 0.006 32.5 9.8 81 77-167 438-526 (590)
484 2rjn_A Response regulator rece 28.5 2.9E+02 0.0098 23.9 11.0 44 158-208 51-94 (154)
485 2rep_A Kinesin-like protein KI 28.4 27 0.00092 37.5 2.7 24 47-70 108-133 (376)
486 1zu4_A FTSY; GTPase, signal re 28.3 42 0.0014 34.9 4.2 31 55-85 107-140 (320)
487 2i3b_A HCR-ntpase, human cance 28.3 35 0.0012 32.6 3.3 18 53-70 1-18 (189)
488 1jjv_A Dephospho-COA kinase; P 28.3 31 0.0011 32.7 2.9 18 56-73 5-22 (206)
489 3auy_A DNA double-strand break 28.2 23 0.00077 37.6 2.1 15 56-70 28-42 (371)
490 4e22_A Cytidylate kinase; P-lo 27.8 33 0.0011 34.1 3.2 23 52-74 26-48 (252)
491 2pez_A Bifunctional 3'-phospho 27.8 30 0.001 32.0 2.7 20 52-71 4-23 (179)
492 3m6a_A ATP-dependent protease 27.7 40 0.0014 37.8 4.2 20 53-72 108-127 (543)
493 3f9v_A Minichromosome maintena 27.5 24 0.0008 40.3 2.2 16 55-70 329-344 (595)
494 3l9o_A ATP-dependent RNA helic 27.5 34 0.0012 42.0 3.7 64 257-331 226-295 (1108)
495 2cdn_A Adenylate kinase; phosp 27.4 36 0.0012 32.1 3.2 19 54-72 21-39 (201)
496 2if2_A Dephospho-COA kinase; a 27.1 32 0.0011 32.5 2.8 20 55-74 3-22 (204)
497 1ak2_A Adenylate kinase isoenz 27.1 36 0.0012 33.2 3.2 20 53-72 16-35 (233)
498 1ukz_A Uridylate kinase; trans 27.0 49 0.0017 31.1 4.1 18 55-72 17-34 (203)
499 3dzz_A Putative pyridoxal 5'-p 26.9 4.9E+02 0.017 26.3 12.4 142 19-172 38-206 (391)
500 2jlq_A Serine protease subunit 26.9 95 0.0033 33.6 6.9 57 77-139 187-243 (451)
No 1
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4.8e-71 Score=640.38 Aligned_cols=413 Identities=38% Similarity=0.705 Sum_probs=372.1
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHH
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALME 92 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~ 92 (724)
..+.+..+++.+.+...|++.|||..|||+|.++|++++.|+|++++||||+|||+||++|++...+.+|||+|+++||.
T Consensus 19 ~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~ 98 (591)
T 2v1x_A 19 AAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLME 98 (591)
T ss_dssp GGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHH
T ss_pred hccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHH
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccCh-hHHHHHHhhhhcCCccEEEEccccccc
Q 004900 93 NQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 93 qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~-~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
||++.+..+|+.+..++++........++..+.......+|+|+|||.+... .++..+........+++||||||||++
T Consensus 99 q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is 178 (591)
T 2v1x_A 99 DQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCS 178 (591)
T ss_dssp HHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGS
T ss_pred HHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccc
Confidence 9999999999999999999888887777777654445689999999998764 566666666667789999999999999
Q ss_pred cCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccc-hhhHHHHHH
Q 004900 172 SWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL-LDDAYADLC 250 (724)
Q Consensus 172 ~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~-~~~k~~~L~ 250 (724)
+|||+||+.|..|..++..+|++|+++||||+++.+..++...+++..+.++..+++++|+.|.+..... ...++..|.
T Consensus 179 ~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~ 258 (591)
T 2v1x_A 179 QWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIV 258 (591)
T ss_dssp TTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887643 345677788
Q ss_pred HHHHh-cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcce
Q 004900 251 SVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL 329 (724)
Q Consensus 251 ~lLk~-~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~ 329 (724)
+++.. ..+.++||||+|++.++.++..|...|+.+..|||+|++.+|..+++.|.+|+++|||||++++||||+|+|++
T Consensus 259 ~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~ 338 (591)
T 2v1x_A 259 KLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRF 338 (591)
T ss_dssp HHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEE
T ss_pred HHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccE
Confidence 88764 36678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhccCCCCCcchhhHhhhhhhhhhHHHHHHhhh-c
Q 004900 330 VCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCE-G 408 (724)
Q Consensus 330 VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~e-~ 408 (724)
||||++|.|++.|+||+|||||+|++|.|++||++.|...++.++... ......+..|+.||+ .
T Consensus 339 VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~ 403 (591)
T 2v1x_A 339 VIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSMVVME---------------NVGQQKLYEMVSYCQNI 403 (591)
T ss_dssp EEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHTTTS---------------TTHHHHHHHHHHHHTCS
T ss_pred EEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHHhhh---------------hhhHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999998888777432 123467889999999 5
Q ss_pred cCcchhcchhhcCCCCCCCCcCCCCCCCCCch
Q 004900 409 SGCRRKKILESFGEQIPVSLCKNSCDACKHPN 440 (724)
Q Consensus 409 ~~Crr~~ll~~fge~~~~~~c~~~CD~C~~~~ 440 (724)
..|||..|++|||+...+..|+.+||+|..+.
T Consensus 404 ~~Crr~~ll~~f~e~~~~~~c~~~Cd~C~~~~ 435 (591)
T 2v1x_A 404 SKCRRVLMAQHFDEVWNSEACNKMCDNCCKDS 435 (591)
T ss_dssp SSCHHHHHHHHHTCCC---CCCSCBHHHHCCC
T ss_pred cccHHHHHHHHcCCCCCccccCCCCCCCCCCC
Confidence 79999999999999987778988999998763
No 2
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=8.8e-70 Score=622.24 Aligned_cols=406 Identities=41% Similarity=0.730 Sum_probs=368.3
Q ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHH
Q 004900 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQ 94 (724)
Q Consensus 15 ~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qq 94 (724)
..|+.+++.+.+...|++.|||..|||+|.++|+++++|+|++++||||+|||+||++|++...+.+|||+|+++|+.||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~ 81 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQ 81 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHH
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHH
Confidence 35888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCC
Q 004900 95 VIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (724)
Q Consensus 95 v~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G 174 (724)
++.++.+|+.+..+++.............+..+. .+++|+|||.+.++.+...+. ...+++||||||||+++||
T Consensus 82 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~--~~ilv~Tpe~l~~~~~~~~l~----~~~~~~vViDEaH~i~~~g 155 (523)
T 1oyw_A 82 VDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQ--IRLLYIAPERLMLDNFLEHLA----HWNPVLLAVDEAHCISQWG 155 (523)
T ss_dssp HHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTC--CSEEEECHHHHTSTTHHHHHT----TSCEEEEEESSGGGGCTTS
T ss_pred HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHhChHHHHHHh----hCCCCEEEEeCccccCcCC
Confidence 9999999999999999888777766666666654 889999999998776655442 3569999999999999999
Q ss_pred CCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHH
Q 004900 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (724)
Q Consensus 175 ~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk 254 (724)
++||+.|..+..++..+|++|+++||||+++.+..++...+++.++.++..+++++|+.|.+.... .+...+.+++.
T Consensus 156 ~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~---~~~~~l~~~l~ 232 (523)
T 1oyw_A 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKF---KPLDQLMRYVQ 232 (523)
T ss_dssp SCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECS---SHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCC---CHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887653 45677888888
Q ss_pred hcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeC
Q 004900 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN 334 (724)
Q Consensus 255 ~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d 334 (724)
...+.++||||+|++.++.++..|...|+.+..|||+|++++|..+++.|.+|+++|||||++++||||+|+|++||||+
T Consensus 233 ~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~ 312 (523)
T 1oyw_A 233 EQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFD 312 (523)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESS
T ss_pred hcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEEC
Confidence 77778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhccCCCCCcchhhHhhhhhhhhhHHHHHHhhhccCcchh
Q 004900 335 IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKKSISDFSQMVDYCEGSGCRRK 414 (724)
Q Consensus 335 ~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~m~~~~e~~~Crr~ 414 (724)
+|.|++.|+||+|||||+|.+|.|++||++.|...+++++..... .+........+.+|+.||++..|||+
T Consensus 313 ~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~~~~~~~~---------~~~~~~~~~~l~~m~~~~~~~~crr~ 383 (523)
T 1oyw_A 313 IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRRCLEEKPQ---------GQLQDIERHKLNAMGAFAEAQTCRRL 383 (523)
T ss_dssp CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHHHTSCC---------SHHHHHHHHHHHHHHHHHTCSSCHHH
T ss_pred CCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHHHHhccCc---------HHHHHHHHHHHHHHHHHHhccccHhh
Confidence 999999999999999999999999999999999999888875211 11223455678999999999999999
Q ss_pred cchhhcCCCCCCCCcCCCCCCCCCch
Q 004900 415 KILESFGEQIPVSLCKNSCDACKHPN 440 (724)
Q Consensus 415 ~ll~~fge~~~~~~c~~~CD~C~~~~ 440 (724)
.|++|||+..+ ..|+ .||+|..+.
T Consensus 384 ~l~~~f~e~~~-~~c~-~cd~c~~~~ 407 (523)
T 1oyw_A 384 VLLNYFGEGRQ-EPCG-NCDICLDPP 407 (523)
T ss_dssp HHHHHTTCCCC-SCCS-CBHHHHSCC
T ss_pred hhHhhcCCCCC-CCCC-CCCCCCCCc
Confidence 99999999875 4687 599998753
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=9.8e-49 Score=437.92 Aligned_cols=339 Identities=19% Similarity=0.272 Sum_probs=273.9
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC-----------CCeEE
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----------PGIVL 82 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~-----------~~~vL 82 (724)
...|.++.+.+.+.+.|+. +||..|+|+|.++|+.++.|+|++++||||+|||++|++|++.. ++.+|
T Consensus 55 ~~~f~~~~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~l 133 (434)
T 2db3_A 55 IQHFTSADLRDIIIDNVNK-SGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVV 133 (434)
T ss_dssp CCCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEE
T ss_pred cCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEE
Confidence 4567888999999999988 79999999999999999999999999999999999999999742 45899
Q ss_pred EEcCcHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH-hhhhcC
Q 004900 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRG 157 (724)
Q Consensus 83 VlsPl~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~-~~~~~~ 157 (724)
||+||++|+.|+.+.+++++ +.+..+.++.......... . ...+|+++||+.+.. .+. ......
T Consensus 134 il~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l---~---~~~~Ivv~Tp~~l~~-----~l~~~~~~l~ 202 (434)
T 2db3_A 134 IVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECI---T---RGCHVVIATPGRLLD-----FVDRTFITFE 202 (434)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHH---T---TCCSEEEECHHHHHH-----HHHTTSCCCT
T ss_pred EEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHh---h---cCCCEEEEChHHHHH-----HHHhCCcccc
Confidence 99999999999999999864 5566666665544332221 1 236788888876532 111 122356
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccC---CCCceEE
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSF---NRPNLFY 234 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~---~r~ni~~ 234 (724)
.+++|||||||++.+|| |++.+..+.......++.++++||||+++.+....... +.++..+.... ...++..
T Consensus 203 ~~~~lVlDEah~~~~~g--f~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~--l~~~~~i~~~~~~~~~~~i~~ 278 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMG--FSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEF--LKNYVFVAIGIVGGACSDVKQ 278 (434)
T ss_dssp TCCEEEEETHHHHTSTT--THHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTT--CSSCEEEEESSTTCCCTTEEE
T ss_pred cCCeEEEccHhhhhccC--cHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHh--ccCCEEEEeccccccccccce
Confidence 68999999999999998 88888777554444568899999999999877644443 44565544322 2334444
Q ss_pred EEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEE
Q 004900 235 EVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA 314 (724)
Q Consensus 235 ~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVA 314 (724)
.+.... ...+...|.+++...... +||||++++.|+.++..|...|+.+..+||++++.+|..++++|++|+.+||||
T Consensus 279 ~~~~~~-~~~k~~~l~~~l~~~~~~-~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLva 356 (434)
T 2db3_A 279 TIYEVN-KYAKRSKLIEILSEQADG-TIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIA 356 (434)
T ss_dssp EEEECC-GGGHHHHHHHHHHHCCTT-EEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEE
T ss_pred EEEEeC-cHHHHHHHHHHHHhCCCC-EEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEE
Confidence 443332 245777888888876654 999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccc-cHHHH
Q 004900 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRM 370 (724)
Q Consensus 315 T~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~-D~~~~ 370 (724)
|+++++|||+|+|++||+||+|.++++|+||+||+||.|+.|.+++|++++ |...+
T Consensus 357 T~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~ 413 (434)
T 2db3_A 357 TSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIA 413 (434)
T ss_dssp CGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGH
T ss_pred chhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccccHHHH
Confidence 999999999999999999999999999999999999999999999999854 44333
No 4
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1e-48 Score=453.02 Aligned_cols=346 Identities=18% Similarity=0.236 Sum_probs=266.8
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHH--cCCcEEEEcCCCchHHHHHHHHHHcC----------CCeEEEEcCcH
Q 004900 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLI 88 (724)
Q Consensus 21 ~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail--~g~dvlv~apTGsGKTl~~~lpal~~----------~~~vLVlsPl~ 88 (724)
.+.+++.++|+. +||..|+|+|.++|+.++ .|+|+++.||||+|||++|++|++.. ...+|||+|++
T Consensus 27 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 27 VLDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SSCHHHHHHHHT-TTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 378899999987 899999999999999999 78899999999999999999999842 34899999999
Q ss_pred HHHHHHHHHHHHc-----C---CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCcc
Q 004900 89 ALMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN 160 (724)
Q Consensus 89 aL~~qqv~~l~~~-----g---i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~ 160 (724)
+|+.|+.+.++.+ + +....+.++..... ....+... ..+|+++||+.+... +... .......++
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~---~~~~l~~~--~~~IlV~Tp~~l~~~--l~~~-~~~~~~~~~ 177 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRA---AMNKMNKL--RPNIVIATPGRLIDV--LEKY-SNKFFRFVD 177 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHH---HHHHHHHH--CCSEEEECHHHHHHH--HHHH-HHHHCTTCC
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHH---HHHHHhcC--CCCEEEECHHHHHHH--HHhc-cccccccCC
Confidence 9999999999874 2 22333344333222 22222221 267999999876421 1111 122345689
Q ss_pred EEEEccccccccCCCCChHHHHHHHHHHhhC-----CCCCEEEEeecCChhhHHHHHHhhccCCCeEeec-c----CCCC
Q 004900 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-----PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-S----FNRP 230 (724)
Q Consensus 161 lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~-----p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~-s----~~r~ 230 (724)
+|||||||++++|| |++.+..+....... +++++++||||+++.+...+...+.......+.. . ....
T Consensus 178 ~lViDEah~l~~~g--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 255 (579)
T 3sqw_A 178 YKVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHE 255 (579)
T ss_dssp EEEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCT
T ss_pred EEEEEChHHhhcCC--CHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCcccccccc
Confidence 99999999999999 999998877665433 2778999999999988765544433222222211 1 1122
Q ss_pred ceEEEEEeccchh----hHHHHHHHHHHh-cCCceEEEEecccccHHHHHHHHHhC---CCceeeecCCCCHHHHHHHHH
Q 004900 231 NLFYEVRYKDLLD----DAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLD 302 (724)
Q Consensus 231 ni~~~v~~~~~~~----~k~~~L~~lLk~-~~~~~~IIf~~sr~~~e~La~~L~~~---gi~v~~~H~~l~~~eR~~vl~ 302 (724)
.+...+....... ..+..+...+.. ..+.++||||+|+..|+.++..|... |+.+..|||+|++.+|..+++
T Consensus 256 ~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~ 335 (579)
T 3sqw_A 256 RIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVK 335 (579)
T ss_dssp TEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHH
T ss_pred ccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHH
Confidence 3333333332212 233344444443 45678999999999999999999886 899999999999999999999
Q ss_pred HhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 303 DWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 303 ~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
.|++|+.+|||||+++++|||+|+|++||||++|.+++.|+||+|||||+|+.|.|++|+.+.|...++.+.+..
T Consensus 336 ~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 336 RFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp HHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999887754
No 5
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=9.3e-49 Score=450.92 Aligned_cols=345 Identities=18% Similarity=0.236 Sum_probs=264.6
Q ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHH--cCCcEEEEcCCCchHHHHHHHHHHcC----------CCeEEEEcCcHH
Q 004900 22 EKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAK----------PGIVLVVSPLIA 89 (724)
Q Consensus 22 ~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail--~g~dvlv~apTGsGKTl~~~lpal~~----------~~~vLVlsPl~a 89 (724)
+.+.+.+.|.. +||..|+|+|.++|+.++ .|+|++++||||+|||++|++|++.. ...+|||+|+++
T Consensus 79 l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITR-MEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHT-TCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHH
T ss_pred CCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHH
Confidence 67888899977 799999999999999999 67899999999999999999999842 248999999999
Q ss_pred HHHHHHHHHHHc-----C---CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccE
Q 004900 90 LMENQVIGLKEK-----G---IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (724)
Q Consensus 90 L~~qqv~~l~~~-----g---i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~l 161 (724)
|+.|+++.++.+ + +....+.++...... +..+... ..+|+++||+.+.... ... .......+++
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~--~~~Iiv~Tp~~l~~~l--~~~-~~~~~~~~~~ 229 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAA---MNKMNKL--RPNIVIATPGRLIDVL--EKY-SNKFFRFVDY 229 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHH---HHHHHHH--CCSEEEECHHHHHHHH--HHH-HHHHCTTCCE
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHH---HHHHhcC--CCCEEEECcHHHHHHH--Hhc-cccccccceE
Confidence 999999999874 2 233444444333222 2222221 2689999998764311 111 1223456899
Q ss_pred EEEccccccccCCCCChHHHHHHHHHHhh-----CCCCCEEEEeecCChhhHHHHHHhhccCCCeEeec-c----CCCCc
Q 004900 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNY-----LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-S----FNRPN 231 (724)
Q Consensus 162 IVIDEAH~l~~~G~dFrp~y~~L~~l~~~-----~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~-s----~~r~n 231 (724)
|||||||++++|| |++.+..+...... .+++++++||||+++.+...+...+.......+.. . .....
T Consensus 230 lViDEah~l~~~~--f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (563)
T 3i5x_A 230 KVLDEADRLLEIG--FRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 307 (563)
T ss_dssp EEEETHHHHTSTT--THHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred EEEeCHHHHhccc--hHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCcccccc
Confidence 9999999999999 89999887665543 23788999999999987765444433222222211 1 11223
Q ss_pred eEEEEEeccchhh----HHHHHHHHHHh-cCCceEEEEecccccHHHHHHHHHhC---CCceeeecCCCCHHHHHHHHHH
Q 004900 232 LFYEVRYKDLLDD----AYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLDD 303 (724)
Q Consensus 232 i~~~v~~~~~~~~----k~~~L~~lLk~-~~~~~~IIf~~sr~~~e~La~~L~~~---gi~v~~~H~~l~~~eR~~vl~~ 303 (724)
+...+........ .+..+...+.. ..+.++||||+|++.|+.++..|... |+.+..|||+|++.+|..+++.
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~ 387 (563)
T 3i5x_A 308 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 387 (563)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred CceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHH
Confidence 3333333222222 23333344443 45678999999999999999999886 8999999999999999999999
Q ss_pred hhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 304 WISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 304 F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
|++|+++|||||+++++|||+|+|++||||++|.++..|+||+|||||+|+.|.|++|+.+.|...++.+.+..
T Consensus 388 f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~ 461 (563)
T 3i5x_A 388 FKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAK 461 (563)
T ss_dssp HHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred HhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998887653
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.9e-47 Score=421.67 Aligned_cols=347 Identities=20% Similarity=0.281 Sum_probs=275.5
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC----------------
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------------- 77 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~---------------- 77 (724)
...|+++.+.+.+.+.|.. +||..|+|+|.++|+.++.|+|+++.+|||+|||++|++|++..
T Consensus 14 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 14 IESFSDVEMGEIIMGNIEL-TRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CSSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred cCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 4458889999999999988 79999999999999999999999999999999999999998742
Q ss_pred --------CCeEEEEcCcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChh
Q 004900 78 --------PGIVLVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPG 145 (724)
Q Consensus 78 --------~~~vLVlsPl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~ 145 (724)
.+.+|||+|+++|+.|+++.++.+ ++.+..+.++........ .+. ...+|+++||+.+....
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~---~~~~I~v~Tp~~l~~~l 166 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIR---DLE---RGCHLLVATPGRLVDMM 166 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHH---HHT---TCCSEEEECHHHHHHHH
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHH---Hhh---CCCCEEEEChHHHHHHH
Confidence 157999999999999999999874 456666666655443322 222 23678888888664211
Q ss_pred HHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCC--CCCEEEEeecCChhhHHHHHHhhccCCCeEe
Q 004900 146 FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (724)
Q Consensus 146 ~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p--~~pil~LSAT~~~~v~~di~~~l~l~~~~vi 223 (724)
. ........+++|||||||++.+|+ |++.+..+.......+ ..+++++|||+++.+...+...+ .++..+
T Consensus 167 ~----~~~~~~~~~~~iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~ 238 (417)
T 2i4i_A 167 E----RGKIGLDFCKYLVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL--DEYIFL 238 (417)
T ss_dssp H----TTSBCCTTCCEEEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC--SSCEEE
T ss_pred H----cCCcChhhCcEEEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEE
Confidence 0 111234568999999999999988 7777766643222222 56799999999988766444443 345433
Q ss_pred ec---cCCCCceEEEEEeccchhhHHHHHHHHHHhc-CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHH
Q 004900 224 KS---SFNRPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSS 299 (724)
Q Consensus 224 ~~---s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~-~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~ 299 (724)
.. ....+++...+..... ..+...+.++++.. .+.++||||++++.++.++..|...|+.+..+||++++++|..
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~ 317 (417)
T 2i4i_A 239 AVGRVGSTSENITQKVVWVEE-SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREE 317 (417)
T ss_dssp EEC----CCSSEEEEEEECCG-GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHH
T ss_pred EeCCCCCCccCceEEEEEecc-HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHH
Confidence 32 2334556555544432 46677788888875 4678999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHh
Q 004900 300 VLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 300 vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
+++.|.+|+.+|||||+++++|||+|++++||+|++|.++..|+||+||+||.|+.|.|++|+++.|...+..+++.
T Consensus 318 ~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~ 394 (417)
T 2i4i_A 318 ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDL 394 (417)
T ss_dssp HHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHH
T ss_pred HHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777666553
No 7
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=6.2e-47 Score=417.37 Aligned_cols=347 Identities=18% Similarity=0.300 Sum_probs=277.4
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEcC
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLVlsP 86 (724)
....|.++++.+.+.+.|+. +||..|+|+|.++++.++.|+|+++.+|||+|||++|++|++. .+..+|||+|
T Consensus 35 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P 113 (410)
T 2j0s_A 35 VTPTFDTMGLREDLLRGIYA-YGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAP 113 (410)
T ss_dssp CCCSGGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcC
Confidence 34568888999999999988 7999999999999999999999999999999999999999984 3578999999
Q ss_pred cHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEE
Q 004900 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (724)
Q Consensus 87 l~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lI 162 (724)
+++|+.|+.+.+..++ +.+....++......... +.. ..+|+++||+.+..... ........+++|
T Consensus 114 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~---~~~ivv~Tp~~l~~~l~----~~~~~~~~~~~v 183 (410)
T 2j0s_A 114 TRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---LDY---GQHVVAGTPGRVFDMIR----RRSLRTRAIKML 183 (410)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---HHH---CCSEEEECHHHHHHHHH----TTSSCCTTCCEE
T ss_pred cHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---hhc---CCCEEEcCHHHHHHHHH----hCCccHhheeEE
Confidence 9999999999998864 455555555444332222 122 25788888876532110 112334568999
Q ss_pred EEccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEeec---cCCCCceEEEEEe
Q 004900 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRY 238 (724)
Q Consensus 163 VIDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~---s~~r~ni~~~v~~ 238 (724)
||||||++.+++ |+..+.. +...+ ++.+++++|||+++.+...+.. .+.++..+.. ....+++...+..
T Consensus 184 ViDEah~~~~~~--~~~~~~~---i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (410)
T 2j0s_A 184 VLDEADEMLNKG--FKEQIYD---VYRYLPPATQVVLISATLPHEILEMTNK--FMTDPIRILVKRDELTLEGIKQFFVA 256 (410)
T ss_dssp EEETHHHHTSTT--THHHHHH---HHTTSCTTCEEEEEESCCCHHHHTTGGG--TCSSCEEECCCGGGCSCTTEEEEEEE
T ss_pred EEccHHHHHhhh--hHHHHHH---HHHhCccCceEEEEEcCCCHHHHHHHHH--HcCCCEEEEecCccccCCCceEEEEE
Confidence 999999999987 5554433 34444 4789999999999876543322 2345544332 2234455544444
Q ss_pred ccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc
Q 004900 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (724)
Q Consensus 239 ~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~ 318 (724)
......+...+.+++......++||||++++.++.++..|...|+.+..+||++++.+|..+++.|++|+.+|||||+++
T Consensus 257 ~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 336 (410)
T 2j0s_A 257 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVW 336 (410)
T ss_dssp ESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGG
T ss_pred eCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChh
Confidence 44445577888888888777899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 319 g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
++|||+|++++||+|++|.+...|+||+||+||.|++|.|++|+...|...++.+.+..
T Consensus 337 ~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~ 395 (410)
T 2j0s_A 337 ARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYY 395 (410)
T ss_dssp SSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHHHHHHHHT
T ss_pred hCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988887776544
No 8
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.4e-46 Score=411.04 Aligned_cols=345 Identities=19% Similarity=0.262 Sum_probs=277.7
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEcCc
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLVlsPl 87 (724)
...|+++++.+++.+.|.. +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++. .+.++|||+|+
T Consensus 20 ~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 98 (400)
T 1s2m_A 20 GNTFEDFYLKRELLMGIFE-AGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPT 98 (400)
T ss_dssp -CCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred cCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCC
Confidence 3568889999999999998 7999999999999999999999999999999999999999985 35589999999
Q ss_pred HHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH-hhhhcCCccEE
Q 004900 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (724)
Q Consensus 88 ~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~-~~~~~~~l~lI 162 (724)
++|+.|+.+.++.+ ++.+....++........ . .....+|+++||+.+.. .+. .......+++|
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~---~~~~~~Ivv~T~~~l~~-----~~~~~~~~~~~~~~v 167 (400)
T 1s2m_A 99 RELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIL---R---LNETVHILVGTPGRVLD-----LASRKVADLSDCSLF 167 (400)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHH---H---TTSCCSEEEECHHHHHH-----HHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHH---H---hcCCCCEEEEchHHHHH-----HHHhCCcccccCCEE
Confidence 99999999999885 455665655544332211 1 12347899999887532 111 22334568999
Q ss_pred EEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEe--eccCCCCceEEEEEec
Q 004900 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL--KSSFNRPNLFYEVRYK 239 (724)
Q Consensus 163 VIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi--~~s~~r~ni~~~v~~~ 239 (724)
||||||++.+.+ |+.. +..+...++ +.++++||||+++.+...+...+. .+..+ ......+++...+...
T Consensus 168 IiDEaH~~~~~~--~~~~---~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 240 (400)
T 1s2m_A 168 IMDEADKMLSRD--FKTI---IEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLH--KPYEINLMEELTLKGITQYYAFV 240 (400)
T ss_dssp EEESHHHHSSHH--HHHH---HHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS--SCEEESCCSSCBCTTEEEEEEEC
T ss_pred EEeCchHhhhhc--hHHH---HHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcC--CCeEEEeccccccCCceeEEEEe
Confidence 999999987643 4433 344444444 678999999999988776666543 33322 2233344544333332
Q ss_pred cchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc
Q 004900 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (724)
Q Consensus 240 ~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g 319 (724)
. ...+...+..++......++||||++++.++.++..|...|+.+..+||+|+..+|..+++.|.+|+.+|||||++++
T Consensus 241 ~-~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~ 319 (400)
T 1s2m_A 241 E-ERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLT 319 (400)
T ss_dssp C-GGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSS
T ss_pred c-hhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccc
Confidence 2 245677788888887778999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhcc
Q 004900 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (724)
Q Consensus 320 ~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~ 378 (724)
+|+|+|++++||++++|.+...|+||+||+||.|+.|.|++|++..|...++.+.+...
T Consensus 320 ~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 378 (400)
T 1s2m_A 320 RGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLYKIEQELG 378 (400)
T ss_dssp SSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHHHHHHHHT
T ss_pred cCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999998888877543
No 9
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=4.1e-46 Score=407.09 Aligned_cols=344 Identities=15% Similarity=0.229 Sum_probs=273.4
Q ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCcH
Q 004900 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (724)
Q Consensus 15 ~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl~ 88 (724)
..|+++.+++.+.+.|+. +||..|+|+|.++++.++.|+++++.+|||+|||++|++|++.. ..++|||+|++
T Consensus 8 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp -CGGGGCCCHHHHHHHHH-HSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 457888999999999988 79999999999999999999999999999999999999999853 45899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEE
Q 004900 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (724)
Q Consensus 89 aL~~qqv~~l~~~-----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIV 163 (724)
+|+.|+.+.+..+ ++.+..+.++.......... ..+ ..+|+++||+.+..... ........+++||
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~--~~~iiv~T~~~l~~~~~----~~~~~~~~~~~vV 157 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKN--CPHIVVGTPGRILALAR----NKSLNLKHIKHFI 157 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH---HHS--CCSEEEECHHHHHHHHH----TTSSCCTTCSEEE
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH---hcC--CCCEEEECHHHHHHHHH----cCCccccccCEEE
Confidence 9999999999886 67777777766554433322 222 25788888887643111 1122345689999
Q ss_pred EccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeecc----CCCCceEEEEEe
Q 004900 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSS----FNRPNLFYEVRY 238 (724)
Q Consensus 164 IDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s----~~r~ni~~~v~~ 238 (724)
|||||++.+| .+|+..+..+ ....+ +.+++++|||+++.+...+...+ .++..+... ....++...+..
T Consensus 158 iDEaH~~~~~-~~~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (391)
T 1xti_A 158 LDECDKMLEQ-LDMRRDVQEI---FRMTPHEKQVMMFSATLSKEIRPVCRKFM--QDPMEIFVDDETKLTLHGLQQYYVK 231 (391)
T ss_dssp ECSHHHHTSS-HHHHHHHHHH---HHTSCSSSEEEEEESSCCSTHHHHHHHHC--SSCEEEECCCCCCCCCTTCEEEEEE
T ss_pred EeCHHHHhhc-cchHHHHHHH---HhhCCCCceEEEEEeeCCHHHHHHHHHHc--CCCeEEEecCccccCcccceEEEEE
Confidence 9999999886 2355554443 34443 78899999999998777555544 344433221 122333333332
Q ss_pred ccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc
Q 004900 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (724)
Q Consensus 239 ~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~ 318 (724)
. ....+...+.++++...+.++||||++++.++.++..|...|+.+..+||+++..+|..+++.|.+|+.+|||||+++
T Consensus 232 ~-~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 310 (391)
T 1xti_A 232 L-KDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLF 310 (391)
T ss_dssp C-CGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred c-CchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChh
Confidence 2 234667788888888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccH-HHHHHHHH
Q 004900 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR-RRMEFILS 375 (724)
Q Consensus 319 g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~-~~~~~i~~ 375 (724)
++|+|+|++++||++++|.++..|+||+||+||.|++|.|++|+...+. ..++.+.+
T Consensus 311 ~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~ 368 (391)
T 1xti_A 311 GRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQD 368 (391)
T ss_dssp SSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHH
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987654 33444443
No 10
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=2e-46 Score=412.57 Aligned_cols=347 Identities=19% Similarity=0.265 Sum_probs=261.6
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEcCc
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSPL 87 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLVlsPl 87 (724)
...|..+++.+.+.+.|+. +|+..|+++|.++|+.++.|+++++.+|||+|||++|++|++. ....+|||+|+
T Consensus 39 ~~~f~~~~l~~~~~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 39 VDSFDDMNLSESLLRGIYA-YGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp CCCGGGGCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hcCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 3556778899999999998 8999999999999999999999999999999999999999985 46789999999
Q ss_pred HHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEE
Q 004900 88 IALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (724)
Q Consensus 88 ~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIV 163 (724)
++|+.|+.+.++.++ +......++...... ...+... ..+|+++||+.+.... .........+++||
T Consensus 118 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~iiv~T~~~l~~~l----~~~~~~~~~~~~vV 188 (414)
T 3eiq_A 118 RELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQME--APHIIVGTPGRVFDML----NRRYLSPKYIKMFV 188 (414)
T ss_dssp HHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTT--CCSEEEECHHHHHHHH----HHTSSCSTTCCEEE
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcC--CCCEEEECHHHHHHHH----HcCCcccccCcEEE
Confidence 999999999998863 444444444333222 2222222 3678888888764311 11223345589999
Q ss_pred EccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEeec---cCCCCceEEEEEec
Q 004900 164 IDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYK 239 (724)
Q Consensus 164 IDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~---s~~r~ni~~~v~~~ 239 (724)
|||||++.+|+ |...+. .+...+ ++.++++||||+++.+...+... +.++..+.. .....++.......
T Consensus 189 iDEah~~~~~~--~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (414)
T 3eiq_A 189 LDEADEMLSRG--FKDQIY---DIFQKLNSNTQVVLLSATMPSDVLEVTKKF--MRDPIRILVKKEELTLEGIRQFYINV 261 (414)
T ss_dssp ECSHHHHHHTT--THHHHH---HHHTTSCTTCEEEEECSCCCHHHHHHHTTT--CSSCEEECCCCCCCCTTSCCEEEEEC
T ss_pred EECHHHhhccC--cHHHHH---HHHHhCCCCCeEEEEEEecCHHHHHHHHHH--cCCCEEEEecCCccCCCCceEEEEEe
Confidence 99999999887 444443 334443 58899999999998877644433 334443322 12233444434444
Q ss_pred cchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc
Q 004900 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG 319 (724)
Q Consensus 240 ~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g 319 (724)
.....+...+..++......++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|.+|+.+|||||++++
T Consensus 262 ~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~ 341 (414)
T 3eiq_A 262 EREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLA 341 (414)
T ss_dssp SSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC
T ss_pred ChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccc
Confidence 44456788888888888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 320 ~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
+|||+|++++||++++|.+...|+||+||+||.|++|.|++|+...|...++.+.+..
T Consensus 342 ~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 399 (414)
T 3eiq_A 342 RGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFY 399 (414)
T ss_dssp --CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHT
T ss_pred cCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988877766543
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=1.7e-45 Score=404.56 Aligned_cols=345 Identities=19% Similarity=0.246 Sum_probs=271.2
Q ss_pred ccccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHHHHHHc------CCCeEE
Q 004900 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA------KPGIVL 82 (724)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~lpal~------~~~~vL 82 (724)
......|.++++++.+.+.|++ +||..|+|+|.++++.++.+ +++++.+|||+|||++|++|++. ..+++|
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~l 99 (412)
T 3fht_A 21 LYSVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 99 (412)
T ss_dssp TCCSSCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred ccccCCHhhCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEE
Confidence 3445678889999999999998 89999999999999999987 89999999999999999999874 244899
Q ss_pred EEcCcHHHHHHHHHHHHHcC-----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH--hhhh
Q 004900 83 VVSPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHS 155 (724)
Q Consensus 83 VlsPl~aL~~qqv~~l~~~g-----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~--~~~~ 155 (724)
||+|+++|+.|+.+.++.++ +......++..... ......+|+++||+.+.. .+. ....
T Consensus 100 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ivv~T~~~l~~-----~~~~~~~~~ 165 (412)
T 3fht_A 100 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTVLD-----WCSKLKFID 165 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT---------TCCCCCSEEEECHHHHHH-----HHTTSCSSC
T ss_pred EECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh---------hhcCCCCEEEECchHHHH-----HHHhcCCcC
Confidence 99999999999999888853 33333332221110 011235788888876532 111 1222
Q ss_pred cCCccEEEEcccccccc-CCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEeec---cCCCC
Q 004900 156 RGLLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRP 230 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~-~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~---s~~r~ 230 (724)
...+++|||||||++.+ ++ |...+..+ ...+ ++.+++++|||+++.+.......+ .++..+.. .....
T Consensus 166 ~~~~~~iViDEah~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 238 (412)
T 3fht_A 166 PKKIKVFVLDEADVMIATQG--HQDQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQKVV--PDPNVIKLKREEETLD 238 (412)
T ss_dssp GGGCCEEEEETHHHHHSTTT--THHHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHS--SSCEEECCCGGGSSCT
T ss_pred hhhCcEEEEeCHHHHhhcCC--cHHHHHHH---HhhCCCCceEEEEEeecCHHHHHHHHHhc--CCCeEEeecccccccc
Confidence 34589999999999987 44 45444433 3333 478999999999998877555543 34444332 23344
Q ss_pred ceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCce
Q 004900 231 NLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQ 310 (724)
Q Consensus 231 ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~ 310 (724)
++............++..+..++....+.++||||++++.++.++..|...|+.+..+||+|+..+|..+++.|++|+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~ 318 (412)
T 3fht_A 239 TIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEK 318 (412)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCS
T ss_pred CceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCc
Confidence 55555555555567888888888887788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccccCCCCcceEEeeCCC------CCHHHHHHHHcccCCCCCCCeEEEEEcccc-HHHHHHHHHhc
Q 004900 311 VVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFILSKN 377 (724)
Q Consensus 311 VLVAT~a~g~GIDip~V~~VI~~d~P------~S~~~yiQr~GRAGRdG~~g~~il~~~~~D-~~~~~~i~~~~ 377 (724)
|||||+++++|||+|++++||+|++| .+...|+||+||+||.|+.|.|+++++..+ ...++.+.+..
T Consensus 319 vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~ 392 (412)
T 3fht_A 319 VLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHF 392 (412)
T ss_dssp EEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHH
T ss_pred EEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHH
Confidence 99999999999999999999999999 578999999999999999999999998765 55565555543
No 12
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.1e-45 Score=400.58 Aligned_cols=340 Identities=17% Similarity=0.244 Sum_probs=268.4
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEc
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~lpal~------~~~~vLVls 85 (724)
...|+++++++.+.+.|.. +|+..|+|+|.++++.++.+ +++++.+|||+|||++|++|++. .++.+|||+
T Consensus 4 ~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~ 82 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYA-MKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLA 82 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEEC
Confidence 4678899999999999998 79999999999999999998 89999999999999999999875 356899999
Q ss_pred CcHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccE
Q 004900 86 PLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (724)
Q Consensus 86 Pl~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~l 161 (724)
|+++|+.|+.+.++.++ +......+..... ......+|+++||+.+.... .........+++
T Consensus 83 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~iiv~T~~~l~~~~----~~~~~~~~~~~~ 148 (395)
T 3pey_A 83 PSRELARQTLEVVQEMGKFTKITSQLIVPDSFEK----------NKQINAQVIVGTPGTVLDLM----RRKLMQLQKIKI 148 (395)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT----------TSCBCCSEEEECHHHHHHHH----HTTCBCCTTCCE
T ss_pred CCHHHHHHHHHHHHHHhcccCeeEEEEecCchhh----------hccCCCCEEEEcHHHHHHHH----HcCCcccccCCE
Confidence 99999999999999864 3333333221111 11124678888888664211 012233556899
Q ss_pred EEEcccccccc-CCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEee---ccCCCCceEEEE
Q 004900 162 VAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK---SSFNRPNLFYEV 236 (724)
Q Consensus 162 IVIDEAH~l~~-~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~---~s~~r~ni~~~v 236 (724)
|||||||++.+ ++ |...+..+ ...+ ++.+++++|||+++.+...+...+. ++..+. .....+++...+
T Consensus 149 iIiDEah~~~~~~~--~~~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 221 (395)
T 3pey_A 149 FVLDEADNMLDQQG--LGDQCIRV---KRFLPKDTQLVLFSATFADAVRQYAKKIVP--NANTLELQTNEVNVDAIKQLY 221 (395)
T ss_dssp EEEETHHHHHHSTT--HHHHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHSC--SCEEECCCGGGCSCTTEEEEE
T ss_pred EEEEChhhhcCccc--cHHHHHHH---HHhCCCCcEEEEEEecCCHHHHHHHHHhCC--CCeEEEccccccccccccEEE
Confidence 99999999987 44 44444433 3433 4689999999999887665554433 333222 233445555555
Q ss_pred EeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 237 ~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
........+...+..++....+.++||||++++.++.++..|+..|+.+..+||+|+..+|..+++.|.+|+.+|||||+
T Consensus 222 ~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~ 301 (395)
T 3pey_A 222 MDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN 301 (395)
T ss_dssp EECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG
T ss_pred EEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC
Confidence 55545566777788888777778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCcceEEeeCCCC------CHHHHHHHHcccCCCCCCCeEEEEEccccHH-HHHHHHH
Q 004900 317 AFGMGIDRKDVRLVCHFNIPK------SMEAFYQESGRAGRDQLPSKSLLYYGMDDRR-RMEFILS 375 (724)
Q Consensus 317 a~g~GIDip~V~~VI~~d~P~------S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~-~~~~i~~ 375 (724)
++++|||+|++++||+|++|. ++..|+||+|||||.|+.|.|++|+...+.. .++.+.+
T Consensus 302 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~ 367 (395)
T 3pey_A 302 VLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQK 367 (395)
T ss_dssp GGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHH
T ss_pred hhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHH
Confidence 999999999999999999999 9999999999999999999999999876544 3444443
No 13
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.2e-45 Score=393.60 Aligned_cols=341 Identities=18% Similarity=0.282 Sum_probs=271.5
Q ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC-CcEEEEcCCCchHHHHHHHHHHc-----CCCeEEEEcCcH
Q 004900 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLI 88 (724)
Q Consensus 15 ~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g-~dvlv~apTGsGKTl~~~lpal~-----~~~~vLVlsPl~ 88 (724)
..|.++++.+.+.+.|++ +|+..|+|+|.++++.++++ +++++.+|||+|||++|++|++. .+..+|||+|++
T Consensus 6 ~~f~~~~l~~~~~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~ 84 (367)
T 1hv8_A 6 MNFNELNLSDNILNAIRN-KGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTR 84 (367)
T ss_dssp CCGGGSSCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCH
T ss_pred CchhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCH
Confidence 347778899999999998 79999999999999999988 69999999999999999999875 266899999999
Q ss_pred HHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEE
Q 004900 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (724)
Q Consensus 89 aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVI 164 (724)
+|+.|+.+.+..+ ++.+..+.++.......... . ..+|+++||+.+..... ........+++|||
T Consensus 85 ~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~----~~~iiv~T~~~l~~~~~----~~~~~~~~~~~iIi 153 (367)
T 1hv8_A 85 ELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K----NANIVVGTPGRILDHIN----RGTLNLKNVKYFIL 153 (367)
T ss_dssp HHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H----TCSEEEECHHHHHHHHH----TTCSCTTSCCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc---C----CCCEEEecHHHHHHHHH----cCCcccccCCEEEE
Confidence 9999999999885 44555555554433322221 1 26788888886532110 11223456899999
Q ss_pred ccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchh
Q 004900 165 DEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243 (724)
Q Consensus 165 DEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~ 243 (724)
||||++.+|+ |...+. .+...+ ++.+++++|||+++.....+...++ ++..+..... .++....... ...
T Consensus 154 DEah~~~~~~--~~~~~~---~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~-~~~ 224 (367)
T 1hv8_A 154 DEADEMLNMG--FIKDVE---KILNACNKDKRILLFSATMPREILNLAKKYMG--DYSFIKAKIN-ANIEQSYVEV-NEN 224 (367)
T ss_dssp ETHHHHHTTT--THHHHH---HHHHTSCSSCEEEEECSSCCHHHHHHHHHHCC--SEEEEECCSS-SSSEEEEEEC-CGG
T ss_pred eCchHhhhhc--hHHHHH---HHHHhCCCCceEEEEeeccCHHHHHHHHHHcC--CCeEEEecCC-CCceEEEEEe-ChH
Confidence 9999999987 554443 334433 5788999999999987776655543 3333332222 2333332222 234
Q ss_pred hHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccC
Q 004900 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (724)
Q Consensus 244 ~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GID 323 (724)
+++..+..+++ ..+.++||||++++.++.+++.|...|+.+..+||+++..+|..+++.|.+|+.+|||||+++++|+|
T Consensus 225 ~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid 303 (367)
T 1hv8_A 225 ERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGID 303 (367)
T ss_dssp GHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCC
T ss_pred HHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCC
Confidence 66777777776 45568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 324 ip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
+|++++||++++|.|+..|+||+||+||.|++|.+++++++.|...++.+.+..
T Consensus 304 ~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~ 357 (367)
T 1hv8_A 304 VNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRREYKKLRYIERAM 357 (367)
T ss_dssp CSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHHHHHHHHH
T ss_pred cccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999888877654
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.3e-45 Score=392.19 Aligned_cols=326 Identities=18% Similarity=0.232 Sum_probs=257.3
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcC
Q 004900 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKG 102 (724)
Q Consensus 23 ~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~g 102 (724)
++++.+.|+. +|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++..+..+|||+|+++|+.|+.+.++.++
T Consensus 2 ~~~i~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~ 80 (337)
T 2z0m_A 2 NEKIEQAIRE-MGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIG 80 (337)
T ss_dssp CHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 5788899987 899999999999999999999999999999999999999999999999999999999999999999753
Q ss_pred ----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCCh
Q 004900 103 ----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (724)
Q Consensus 103 ----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFr 178 (724)
+.+..+.++.......... . ..+|+++||+.+..... ........+++|||||||++.+|+ |.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~---~----~~~i~v~T~~~l~~~~~----~~~~~~~~~~~iViDEah~~~~~~--~~ 147 (337)
T 2z0m_A 81 RYMDTKVAEVYGGMPYKAQINRV---R----NADIVVATPGRLLDLWS----KGVIDLSSFEIVIIDEADLMFEMG--FI 147 (337)
T ss_dssp TTSCCCEEEECTTSCHHHHHHHH---T----TCSEEEECHHHHHHHHH----TTSCCGGGCSEEEEESHHHHHHTT--CH
T ss_pred hhcCCcEEEEECCcchHHHHhhc---C----CCCEEEECHHHHHHHHH----cCCcchhhCcEEEEEChHHhhccc--cH
Confidence 5666666655443322221 1 26788999887643110 111223458999999999999988 44
Q ss_pred HHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcC
Q 004900 179 PSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANG 257 (724)
Q Consensus 179 p~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~ 257 (724)
..+ ..+....+ ..+++++|||+++.....+...+ .++..+......+++.......... .......+....
T Consensus 148 ~~~---~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 219 (337)
T 2z0m_A 148 DDI---KIILAQTSNRKITGLFSATIPEEIRKVVKDFI--TNYEEIEACIGLANVEHKFVHVKDD---WRSKVQALRENK 219 (337)
T ss_dssp HHH---HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHS--CSCEEEECSGGGGGEEEEEEECSSS---SHHHHHHHHTCC
T ss_pred HHH---HHHHhhCCcccEEEEEeCcCCHHHHHHHHHhc--CCceeeecccccCCceEEEEEeChH---HHHHHHHHHhCC
Confidence 443 44444454 56678899999998877666554 3444444444455555544433221 122335566677
Q ss_pred CceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK 337 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~ 337 (724)
+.++||||++++.++.+++.|. .+..+||+++..+|..+++.|.+|+.+|||||+++++|+|+|++++||++++|.
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~ 295 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQ 295 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCS
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCC
Confidence 7889999999999999999886 578999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHH
Q 004900 338 SMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 338 S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~ 375 (724)
|+..|+||+||+||.|++|.|++|+. .|...++.+.+
T Consensus 296 s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~~~~~i~~ 332 (337)
T 2z0m_A 296 DLRTYIHRIGRTGRMGRKGEAITFIL-NEYWLEKEVKK 332 (337)
T ss_dssp SHHHHHHHHTTBCGGGCCEEEEEEES-SCHHHHHHHC-
T ss_pred CHHHhhHhcCccccCCCCceEEEEEe-CcHHHHHHHHH
Confidence 99999999999999999999999999 77666665543
No 15
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.6e-46 Score=410.38 Aligned_cols=346 Identities=18% Similarity=0.249 Sum_probs=147.9
Q ss_pred cccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEc
Q 004900 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (724)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLVls 85 (724)
.....|+++++++.+.+.|.. +|+..|+|+|.++++.++.|+++++.+|||+|||++|++|++. .++++|||+
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~ 96 (394)
T 1fuu_A 18 KVVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 96 (394)
T ss_dssp CCCCSSGGGCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEc
Confidence 345668889999999999988 7999999999999999999999999999999999999999985 356899999
Q ss_pred CcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccE
Q 004900 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (724)
Q Consensus 86 Pl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~l 161 (724)
|+++|+.|+.+.+.++ ++.+..+.++........... ..+|+++||+.+..... ........+++
T Consensus 97 P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~i~v~T~~~l~~~~~----~~~~~~~~~~~ 165 (394)
T 1fuu_A 97 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-------DAQIVVGTPGRVFDNIQ----RRRFRTDKIKM 165 (394)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-------HCSEEEECHHHHHHHHH----TTSSCCTTCCE
T ss_pred CCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-------CCCEEEECHHHHHHHHH----hCCcchhhCcE
Confidence 9999999999998875 466666666655444333222 26788898887642211 11223456899
Q ss_pred EEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeecc---CCCCceEEEEEe
Q 004900 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSS---FNRPNLFYEVRY 238 (724)
Q Consensus 162 IVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s---~~r~ni~~~v~~ 238 (724)
|||||||++.+|+ |+..+..+.. ...++.+++++|||+++.+...+...+ .++..+... ...+++......
T Consensus 166 vIiDEah~~~~~~--~~~~~~~~~~--~~~~~~~~i~~SAT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 239 (394)
T 1fuu_A 166 FILDEADEMLSSG--FKEQIYQIFT--LLPPTTQVVLLSATMPNDVLEVTTKFM--RNPVRILVKKDELTLEGIKQFYVN 239 (394)
T ss_dssp EEEETHHHHHHTT--CHHHHHHHHH--HSCTTCEEEEECSSCCHHHHHHHHHHC--CSCEEEEECC--------------
T ss_pred EEEEChHHhhCCC--cHHHHHHHHH--hCCCCceEEEEEEecCHHHHHHHHHhc--CCCeEEEecCccccCCCceEEEEE
Confidence 9999999999887 6666554422 223578899999999998766555543 344433222 122233222222
Q ss_pred ccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc
Q 004900 239 KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF 318 (724)
Q Consensus 239 ~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~ 318 (724)
......+...+..+++.....++||||++++.++.++..|...|+.+..+||+++..+|..+++.|.+|+.+|||||+++
T Consensus 240 ~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~ 319 (394)
T 1fuu_A 240 VEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLL 319 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChh
Confidence 22223355666667766667789999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHH
Q 004900 319 GMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 319 g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~ 375 (724)
++|+|+|++++||++++|.++..|+||+||+||.|++|.|++|+...|...++.+.+
T Consensus 320 ~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~ 376 (394)
T 1fuu_A 320 ARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEK 376 (394)
T ss_dssp ---------------------------------------------------------
T ss_pred hcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877766554
No 16
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.4e-44 Score=398.50 Aligned_cols=329 Identities=16% Similarity=0.199 Sum_probs=255.9
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHH
Q 004900 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLK 99 (724)
Q Consensus 23 ~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~ 99 (724)
.+++.+.+++.||+ +++|+|.++++.++.|+|+++++|||+|||++|++|++. .++.+|||+|+++|+.|+.+.++
T Consensus 7 ~~~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 7 YEDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp HHHHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHH
Confidence 46788899999999 599999999999999999999999999999999999876 68899999999999999999999
Q ss_pred Hc---CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCC--
Q 004900 100 EK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG-- 174 (724)
Q Consensus 100 ~~---gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G-- 174 (724)
.+ ++.+..++++.....+......+..+. .+|+++||+.+.. +........+++|||||||++.+|+
T Consensus 86 ~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~--~~Iiv~Tp~~l~~------~l~~~~~~~~~~iViDEaH~~~~~~~~ 157 (414)
T 3oiy_A 86 KLADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFVSK------NREKLSQKRFDFVFVDDVDAVLKASRN 157 (414)
T ss_dssp HHCCSSCCEEECCTTSCHHHHHHHHHHHHHTC--CSEEEEEHHHHHH------CHHHHTTCCCSEEEESCHHHHHHCHHH
T ss_pred HHccCCceEEEEECCCChhhHHHHHHHhhcCC--CCEEEECHHHHHH------HHHHhccccccEEEEeChHhhhhccch
Confidence 94 778888888888766666666665553 6788888876542 2222445579999999999999887
Q ss_pred -------CCChHH-HHHHHHHHh------hC---CCCCEEEEeecC-ChhhHHHHHHhhccCCCeEeeccCCCCceEEEE
Q 004900 175 -------HDFRPS-YRKLSSLRN------YL---PDVPILALTATA-APKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV 236 (724)
Q Consensus 175 -------~dFrp~-y~~L~~l~~------~~---p~~pil~LSAT~-~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v 236 (724)
..|++. +..+..... .+ ++.+++++|||+ +..+...+...+.. ..+.......+++...+
T Consensus 158 ~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~ 235 (414)
T 3oiy_A 158 IDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN--FTVGRLVSVARNITHVR 235 (414)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS--CCSSCCCCCCCSEEEEE
T ss_pred hhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc--cCcCccccccccchhee
Confidence 678887 444433322 11 578999999994 44444333333211 11111122334454444
Q ss_pred EeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCcee-eecCCCCHHHHHHHHHHhhcCCceEEEE-
Q 004900 237 RYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA- 314 (724)
Q Consensus 237 ~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~-~~H~~l~~~eR~~vl~~F~~g~~~VLVA- 314 (724)
... ++...|.++++.. +.++||||++++.++.++..|...|+.+. .|||. +|. ++.|++|+++||||
T Consensus 236 ~~~----~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat 304 (414)
T 3oiy_A 236 ISS----RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKINILIGV 304 (414)
T ss_dssp ESS----CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSCSEEEEE
T ss_pred ecc----CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCCeEEEEe
Confidence 433 2345566666664 37899999999999999999999999998 99994 444 99999999999999
Q ss_pred ---ccccccccCCCC-cceEEeeCCC--CCHHHHHHHHcccCCCC----CCCeEEEEEccccHHHHHHHHH
Q 004900 315 ---TVAFGMGIDRKD-VRLVCHFNIP--KSMEAFYQESGRAGRDQ----LPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 315 ---T~a~g~GIDip~-V~~VI~~d~P--~S~~~yiQr~GRAGRdG----~~g~~il~~~~~D~~~~~~i~~ 375 (724)
|+++++|||+|+ |++||+|++| .++..|+||+|||||.| ..|.+++++ .|...++.+.+
T Consensus 305 ~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~ 373 (414)
T 3oiy_A 305 QAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKT 373 (414)
T ss_dssp CCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHH
T ss_pred cCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHH
Confidence 999999999999 9999999999 99999999999999988 478999998 55555554443
No 17
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=8.4e-45 Score=428.23 Aligned_cols=378 Identities=17% Similarity=0.199 Sum_probs=237.3
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC-----C----CeEEEEcCcHHHHHHH-HHHHHHcC---Cc
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK-----P----GIVLVVSPLIALMENQ-VIGLKEKG---IA 104 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~-----~----~~vLVlsPl~aL~~qq-v~~l~~~g---i~ 104 (724)
.|+|+|.++++.++.|+++++.+|||+|||++|++|++.. . +++|||+|+++|+.|| ++.++.++ +.
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~~~ 86 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYR 86 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTTSC
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcCce
Confidence 5999999999999999999999999999999999998752 2 8899999999999999 99999865 67
Q ss_pred eeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHH--HHhhhhcCCccEEEEccccccccCCCCChHHHH
Q 004900 105 GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSK--LKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYR 182 (724)
Q Consensus 105 ~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~--L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~ 182 (724)
+..++++........... ...+|+|+||+.+........ .........+++|||||||++.. ++.++....
T Consensus 87 v~~~~g~~~~~~~~~~~~------~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~-~~~~~~i~~ 159 (699)
T 4gl2_A 87 VIGLSGDTQLKISFPEVV------KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK-EAVYNNIMR 159 (699)
T ss_dssp EEEEC----CCCCHHHHH------HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT-TBSSCSHHH
T ss_pred EEEEeCCcchhhHHHhhh------cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc-cchHHHHHH
Confidence 777776654432211111 137899999997753221000 11122344589999999999853 333443333
Q ss_pred HHHH--HHhhC---------CCCCEEEEeecCChh-------hHHHHHHhhccCCC-eEe---------eccCCCCceEE
Q 004900 183 KLSS--LRNYL---------PDVPILALTATAAPK-------VQKDVMESLCLQNP-LVL---------KSSFNRPNLFY 234 (724)
Q Consensus 183 ~L~~--l~~~~---------p~~pil~LSAT~~~~-------v~~di~~~l~l~~~-~vi---------~~s~~r~ni~~ 234 (724)
.+.. +.... +..++++||||+... ....+...+...++ .+. .....+|+..+
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~ 239 (699)
T 4gl2_A 160 HYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKF 239 (699)
T ss_dssp HHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEE
T ss_pred HHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEE
Confidence 2211 11111 677899999999973 34444433322222 111 11123444444
Q ss_pred EEEeccc-------------------------------------------------------------------------
Q 004900 235 EVRYKDL------------------------------------------------------------------------- 241 (724)
Q Consensus 235 ~v~~~~~------------------------------------------------------------------------- 241 (724)
.......
T Consensus 240 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (699)
T 4gl2_A 240 AIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRM 319 (699)
T ss_dssp EEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCH
T ss_pred EEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322100
Q ss_pred -----------------------------------------------------------hhhHHHHHHHHHH----hcC-
Q 004900 242 -----------------------------------------------------------LDDAYADLCSVLK----ANG- 257 (724)
Q Consensus 242 -----------------------------------------------------------~~~k~~~L~~lLk----~~~- 257 (724)
...++..|.++|. ..+
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~ 399 (699)
T 4gl2_A 320 IDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEE 399 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 0001111122222 223
Q ss_pred CceEEEEecccccHHHHHHHHHhC------CCceeeecCC--------CCHHHHHHHHHHhhcCCceEEEEccccccccC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG------GISCAAYHAG--------LNDKARSSVLDDWISSRKQVVVATVAFGMGID 323 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~------gi~v~~~H~~--------l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GID 323 (724)
+.++||||++++.++.|+..|... |+.+..|||+ |++.+|..++++|++|+++|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 678999999999999999999987 8999999999 99999999999999999999999999999999
Q ss_pred CCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHH--------HHHHHhccCCCCCcchhhHhhhhhh
Q 004900 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM--------EFILSKNQSKNSQSFSTRERSSKKS 395 (724)
Q Consensus 324 ip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~--------~~i~~~~~~~~~~~~~~~~~~~~~~ 395 (724)
+|+|++|||||+|+|+..|+||+|||||.| +.+++++..++.... +.++...... .+.........+..
T Consensus 480 ip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~ 556 (699)
T 4gl2_A 480 IKECNIVIRYGLVTNEIAMVQARGRARADE--STYVLVAHSGSGVIERETVNDFREKMMYKAIHC-VQNMKPEEYAHKIL 556 (699)
T ss_dssp CCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHHH-TTSSCHHHHHHHHH
T ss_pred cccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHH
Confidence 999999999999999999999999998876 455555544432111 1111111110 01111111111222
Q ss_pred hhhHHHHHHhhhccCcchhcchhhcCCCCC
Q 004900 396 ISDFSQMVDYCEGSGCRRKKILESFGEQIP 425 (724)
Q Consensus 396 ~~~l~~m~~~~e~~~Crr~~ll~~fge~~~ 425 (724)
...+..+..+++...|++...+.||++...
T Consensus 557 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (699)
T 4gl2_A 557 ELQMQSIMEKKMKTKRNIAKHYKNNPSLIT 586 (699)
T ss_dssp HHHHHHHHHCCSCCC----------CCSEE
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhcCcceeE
Confidence 234678888999999999999999998753
No 18
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=6.8e-45 Score=410.87 Aligned_cols=340 Identities=19% Similarity=0.252 Sum_probs=136.0
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHHHHHHcC------CCeEEEE
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~lpal~~------~~~vLVl 84 (724)
....|..+.+.+.+.+.|.. +||..|+|+|.++++.++.| +++++.||||+|||++|++|++.. .+.+|||
T Consensus 90 ~~~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil 168 (479)
T 3fmp_B 90 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (479)
T ss_dssp CCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEE
T ss_pred CcCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEE
Confidence 34578888999999999998 89999999999999999987 899999999999999999999853 3389999
Q ss_pred cCcHHHHHHHHHHHHHcC-----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh--hhhcC
Q 004900 85 SPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRG 157 (724)
Q Consensus 85 sPl~aL~~qqv~~l~~~g-----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~--~~~~~ 157 (724)
+|+++|+.|+.+.++.++ +.......+..... ......+|+++||+.+.. .+.. .....
T Consensus 169 ~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~Ivv~Tp~~l~~-----~l~~~~~~~~~ 234 (479)
T 3fmp_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTVLD-----WCSKLKFIDPK 234 (479)
T ss_dssp CSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT---------TCCCCCSEEEECHHHHHH-----HHTTSCCCCGG
T ss_pred eChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc---------cccCCCCEEEECchHHHH-----HHHhcCCcCcc
Confidence 999999999988877742 23333222221110 011235788888876521 1111 22335
Q ss_pred CccEEEEcccccccc-CCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC---CCce
Q 004900 158 LLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN---RPNL 232 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~-~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~---r~ni 232 (724)
.+++|||||||++.+ ++ |...+. .+...+ ++++++++|||++..+....... +.++..+..... ..++
T Consensus 235 ~~~~iViDEah~~~~~~~--~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~ 307 (479)
T 3fmp_B 235 KIKVFVLDEADVMIATQG--HQDQSI---RIQRMLPRNCQMLLFSATFEDSVWKFAQKV--VPDPNVIKLKREEETLDTI 307 (479)
T ss_dssp GCCEEEECCHHHHHTSTT--HHHHHH---HHHTTSCTTSEEEEEESCCCHHHHHHHHHH--SSSEEEEEEC---------
T ss_pred cCCEEEEECHHHHhhcCC--cHHHHH---HHHhhCCccceEEEEeCCCCHHHHHHHHHH--cCCCeEEeccccccCcCCc
Confidence 689999999999986 44 444333 333333 47899999999999877644443 345544433221 1222
Q ss_pred EEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEE
Q 004900 233 FYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVV 312 (724)
Q Consensus 233 ~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VL 312 (724)
...+........++..+..++......++||||++++.|+.++..|...|+.+..+||+|++.+|..+++.|.+|+++||
T Consensus 308 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iL 387 (479)
T 3fmp_B 308 KQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVL 387 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEE
Confidence 22222222234566677777776667789999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccccCCCCcceEEeeCCC------CCHHHHHHHHcccCCCCCCCeEEEEEcccc-HHHHHHHH
Q 004900 313 VATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDD-RRRMEFIL 374 (724)
Q Consensus 313 VAT~a~g~GIDip~V~~VI~~d~P------~S~~~yiQr~GRAGRdG~~g~~il~~~~~D-~~~~~~i~ 374 (724)
|||+++++|||+|+|++||+||+| .+...|+||+|||||.|+.|.|++|++..+ ...++.+.
T Consensus 388 v~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~~~~~~~~i~ 456 (479)
T 3fmp_B 388 VTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQ 456 (479)
T ss_dssp ---------------------------------------------------------------------
T ss_pred EEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEcCcchHHHHHHHH
Confidence 999999999999999999999999 577899999999999999999999998665 44444443
No 19
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.1e-42 Score=421.11 Aligned_cols=392 Identities=17% Similarity=0.223 Sum_probs=272.3
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHH---cCCCeEEEEcCcHHHHHHHHHH
Q 004900 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALMENQVIG 97 (724)
Q Consensus 21 ~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal---~~~~~vLVlsPl~aL~~qqv~~ 97 (724)
..-.++...+...|+|. |+|+|.++|+.++.|+|++++||||+|||++|++++. ..++++||++|+++|+.|+++.
T Consensus 23 ~~f~~l~~~~~~~~~f~-l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 23 ENFDELIPNPARSWPFE-LDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp TTHHHHCSSCSCCCSSC-CCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHH
T ss_pred cchhhhhHhHHHhCCCC-CCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 33345555556678886 8999999999999999999999999999999888765 3578899999999999999999
Q ss_pred HHHc--CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCC
Q 004900 98 LKEK--GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGH 175 (724)
Q Consensus 98 l~~~--gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~ 175 (724)
++.+ ++.+..++++... ....+++|+||+.+..... ........+++|||||||++.+|+
T Consensus 102 l~~~~~~~~v~~l~G~~~~-------------~~~~~IlV~Tpe~L~~~l~----~~~~~l~~l~lvViDEaH~l~d~~- 163 (997)
T 4a4z_A 102 FKETFDDVNIGLITGDVQI-------------NPDANCLIMTTEILRSMLY----RGADLIRDVEFVIFDEVHYVNDQD- 163 (997)
T ss_dssp HHTTC--CCEEEECSSCEE-------------CTTSSEEEEEHHHHHHHHH----HTCSGGGGEEEEEECCTTCCCTTC-
T ss_pred HHHHcCCCeEEEEeCCCcc-------------CCCCCEEEECHHHHHHHHH----hCchhhcCCCEEEEECcccccccc-
Confidence 9985 5677777765532 1347899999997743211 112223458999999999999998
Q ss_pred CChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccC--CCe-EeeccCCCCceEEEEEecc------------
Q 004900 176 DFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ--NPL-VLKSSFNRPNLFYEVRYKD------------ 240 (724)
Q Consensus 176 dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~--~~~-vi~~s~~r~ni~~~v~~~~------------ 240 (724)
|...+..+. ....+++++++||||+++.. ++..+++.. .+. ++.......++.+.+....
T Consensus 164 -~g~~~e~ii--~~l~~~v~iIlLSAT~~n~~--ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~ 238 (997)
T 4a4z_A 164 -RGVVWEEVI--IMLPQHVKFILLSATVPNTY--EFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEF 238 (997)
T ss_dssp -TTCCHHHHH--HHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCB
T ss_pred -hHHHHHHHH--HhcccCCCEEEEcCCCCChH--HHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhh
Confidence 444555442 22334799999999987654 456665432 222 2322222222222221000
Q ss_pred --------------------------------------------------------------------------------
Q 004900 241 -------------------------------------------------------------------------------- 240 (724)
Q Consensus 241 -------------------------------------------------------------------------------- 240 (724)
T Consensus 239 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (997)
T 4a4z_A 239 LEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDG 318 (997)
T ss_dssp CHHHHHHHHHHHC-----------------------------------------------------------------CC
T ss_pred hHHHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence
Q ss_pred chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCC-------------------------------------
Q 004900 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI------------------------------------- 283 (724)
Q Consensus 241 ~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi------------------------------------- 283 (724)
.....+..+...+...+..++||||++++.|+.++..|...|+
T Consensus 319 ~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l 398 (997)
T 4a4z_A 319 PSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLL 398 (997)
T ss_dssp CCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHh
Confidence 0122355677777777778999999999999999999987666
Q ss_pred --ceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCC---------CHHHHHHHHcccCCC
Q 004900 284 --SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPK---------SMEAFYQESGRAGRD 352 (724)
Q Consensus 284 --~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~---------S~~~yiQr~GRAGRd 352 (724)
.+..|||+|++.+|..+++.|.+|.++|||||++++||||+|+ +.||++++|+ |+.+|+|++|||||.
T Consensus 399 ~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 399 ERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp TTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccC
Confidence 4689999999999999999999999999999999999999999 6666666665 999999999999999
Q ss_pred C--CCCeEEEEE--ccccHHHHHHHHHhccCCCCCcc-hhh---HhhhhhhhhhHHHHHHhh------hccCcchhcchh
Q 004900 353 Q--LPSKSLLYY--GMDDRRRMEFILSKNQSKNSQSF-STR---ERSSKKSISDFSQMVDYC------EGSGCRRKKILE 418 (724)
Q Consensus 353 G--~~g~~il~~--~~~D~~~~~~i~~~~~~~~~~~~-~~~---~~~~~~~~~~l~~m~~~~------e~~~Crr~~ll~ 418 (724)
| ..|.|++++ ...+...++.++..........+ ... -...+.....++.|+.++ +...|++...+.
T Consensus 478 G~~~~G~vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf~~~~~~~~~~~~~~~l~ 557 (997)
T 4a4z_A 478 GLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSFSENAKETLQPEHEKQIK 557 (997)
T ss_dssp TTCSSEEEEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCcceEEEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHHHHhhccccHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9 466777777 34566677777654433211111 000 001122223455666665 456899999999
Q ss_pred hcCCCCCCCCcCCCCCCCCC
Q 004900 419 SFGEQIPVSLCKNSCDACKH 438 (724)
Q Consensus 419 ~fge~~~~~~c~~~CD~C~~ 438 (724)
+|++......|. .||+|..
T Consensus 558 ~l~~~~~~~~~~-~c~~c~~ 576 (997)
T 4a4z_A 558 VLQEELQTIEYK-SCEICDN 576 (997)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHhhhh-ccccccc
Confidence 999876544565 6999954
No 20
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.9e-42 Score=407.99 Aligned_cols=388 Identities=19% Similarity=0.233 Sum_probs=227.3
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC--------CCeEEEEcCcHHHHHHHHHHHHH
Q 004900 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 29 ~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~--------~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
.|.. +|+..|||+|.++++.++.|+|+++++|||+|||++|++|++.. .+.+|||+|+++|+.||++.+++
T Consensus 5 ~l~~-~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 5 DTNL-YSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp --CT-TC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred cccc-cCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 3444 79999999999999999999999999999999999999998742 27899999999999999999998
Q ss_pred c----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh-hh-hcCCccEEEEccccccccCC
Q 004900 101 K----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWG 174 (724)
Q Consensus 101 ~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~-~~-~~~~l~lIVIDEAH~l~~~G 174 (724)
+ ++.+..++++.......... .. ..+|+++||+.+... +.. .. ....+++|||||||++..+.
T Consensus 84 ~~~~~~~~v~~~~g~~~~~~~~~~~---~~---~~~Iiv~Tp~~L~~~-----l~~~~~~~l~~~~~vViDEaH~~~~~~ 152 (696)
T 2ykg_A 84 YFERHGYRVTGISGATAENVPVEQI---VE---NNDIIILTPQILVNN-----LKKGTIPSLSIFTLMIFDECHNTSKQH 152 (696)
T ss_dssp HTTTTTCCEEEECSSSCSSSCHHHH---HH---TCSEEEECHHHHHHH-----HHTTSSCCGGGCSEEEEETGGGCSTTC
T ss_pred HhccCCceEEEEeCCccccccHHHh---cc---CCCEEEECHHHHHHH-----HhcCcccccccccEEEEeCCCcccCcc
Confidence 6 67777777765432211111 11 378999999876432 211 11 34458999999999998643
Q ss_pred CCChHHHHHHH--HHHhh-----CCCCCEEEEeecCC-------hhhHHHHHHhhccCCCeEeecc----------CCCC
Q 004900 175 HDFRPSYRKLS--SLRNY-----LPDVPILALTATAA-------PKVQKDVMESLCLQNPLVLKSS----------FNRP 230 (724)
Q Consensus 175 ~dFrp~y~~L~--~l~~~-----~p~~pil~LSAT~~-------~~v~~di~~~l~l~~~~vi~~s----------~~r~ 230 (724)
.|..+. .+... .+..++++||||+. ......+...+...+..++... ...|
T Consensus 153 -----~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p 227 (696)
T 2ykg_A 153 -----PYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKP 227 (696)
T ss_dssp -----HHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCC
T ss_pred -----cHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCC
Confidence 243332 12221 25678999999998 4455555544322111111000 0000
Q ss_pred ceEEEEE-------------------------------------------------------------------------
Q 004900 231 NLFYEVR------------------------------------------------------------------------- 237 (724)
Q Consensus 231 ni~~~v~------------------------------------------------------------------------- 237 (724)
...+...
T Consensus 228 ~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (696)
T 2ykg_A 228 QKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICK 307 (696)
T ss_dssp EEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHH
T ss_pred ceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHH
Confidence 0000000
Q ss_pred ------------------------------------------------------------------eccchhhHHHHHHH
Q 004900 238 ------------------------------------------------------------------YKDLLDDAYADLCS 251 (724)
Q Consensus 238 ------------------------------------------------------------------~~~~~~~k~~~L~~ 251 (724)
.......++..|.+
T Consensus 308 ~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ 387 (696)
T 2ykg_A 308 ALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCF 387 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 00001245566666
Q ss_pred HHHhc----CCceEEEEecccccHHHHHHHHHhCC----Cceeee--------cCCCCHHHHHHHHHHhhc-CCceEEEE
Q 004900 252 VLKAN----GDTCAIVYCLERTTCDELSAYLSAGG----ISCAAY--------HAGLNDKARSSVLDDWIS-SRKQVVVA 314 (724)
Q Consensus 252 lLk~~----~~~~~IIf~~sr~~~e~La~~L~~~g----i~v~~~--------H~~l~~~eR~~vl~~F~~-g~~~VLVA 314 (724)
++... .+.++||||+++..++.++..|...| +.+..+ ||+|++++|..++++|++ |+++||||
T Consensus 388 ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVa 467 (696)
T 2ykg_A 388 ILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIA 467 (696)
T ss_dssp HHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEE
T ss_pred HHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEE
Confidence 66654 56789999999999999999999988 888888 569999999999999998 99999999
Q ss_pred ccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhccCCCCCcchhhHhhhhh
Q 004900 315 TVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQSKNSQSFSTRERSSKK 394 (724)
Q Consensus 315 T~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 394 (724)
|+++++|||+|+|++|||||+|.|++.|+||+|| ||. .+|.|++++..++......+...... ... ....+....
T Consensus 468 T~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~-~~g~~~~l~~~~~~~~~~~~~~~~e~--~~~-~~~~~~~~~ 542 (696)
T 2ykg_A 468 TSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA-RGSKCFLLTSNAGVIEKEQINMYKEK--MMN-DSILRLQTW 542 (696)
T ss_dssp EESSCCC---CCCSEEEEESCC--CCCC-----------CCCEEEEEESCHHHHHHHHHHHHHHH--HHH-HHHHHHTTS
T ss_pred echhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC-CCceEEEEecCCCHHHHHHHHHHHHH--HHH-HHHHHhhcc
Confidence 9999999999999999999999999999999999 998 78999999998887554433110000 000 000011111
Q ss_pred hhhhH-HHHHHhhhccCcchhcchhhcCCCCCCCCcCCCCCCCCCc
Q 004900 395 SISDF-SQMVDYCEGSGCRRKKILESFGEQIPVSLCKNSCDACKHP 439 (724)
Q Consensus 395 ~~~~l-~~m~~~~e~~~Crr~~ll~~fge~~~~~~c~~~CD~C~~~ 439 (724)
..+.+ .++.++.+...+.+.....+.. ......|...|++|..+
T Consensus 543 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~c~~c~~~ 587 (696)
T 2ykg_A 543 DEAVFREKILHIQTHEKFIRDSQEKPKP-VPDKENKKLLCRKCKAL 587 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCCCC-CCCCSCEEEEESSSCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhccCC-cccccchhhhccCCCce
Confidence 11222 4555566554444444333322 22233455579999865
No 21
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.8e-43 Score=398.94 Aligned_cols=341 Identities=17% Similarity=0.225 Sum_probs=219.6
Q ss_pred CCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCcH
Q 004900 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (724)
Q Consensus 17 ~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl~ 88 (724)
+.+..+.+.+.+.|.+ .|+..|+++|.++++.+++| +++++.+|||+|||++|++|++.. .+++|||+|++
T Consensus 121 ~~~~~l~~~~~~~l~~-~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXX-XXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred cccccccccccccccc-ccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 3445566677788877 59999999999999999998 999999999999999999998742 45899999999
Q ss_pred HHHHHHHHHHHHcCCceeee-cccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccc
Q 004900 89 ALMENQVIGLKEKGIAGEFL-SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 167 (724)
Q Consensus 89 aL~~qqv~~l~~~gi~~~~l-~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEA 167 (724)
+|+.|+.+.++.++...... .......... ......+|+++||+.+.... .........+++||||||
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~Ivv~T~~~l~~~l----~~~~~~~~~~~lIIiDEa 268 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVPK-------GAKIDAQIVIGTPGTVMDLM----KRRQLDARDIKVFVLDEA 268 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC-----------------CCCCSEEEECHHHHHHHH----HTTCSCCTTCCEEEECCH
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCcccc-------cccCCCCEEEECHHHHHHHH----HcCCccccCCCEEEEech
Confidence 99999999999875322111 1111111100 01124788888888764311 112223556899999999
Q ss_pred ccccc-CCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEeec---cCCCCceEEEEEeccch
Q 004900 168 HCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKS---SFNRPNLFYEVRYKDLL 242 (724)
Q Consensus 168 H~l~~-~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~---s~~r~ni~~~v~~~~~~ 242 (724)
|++++ ++ |...+..+ ...+ ++.+++++|||+++.+.......+ .++..+.. ....+++...+......
T Consensus 269 H~~~~~~~--~~~~~~~i---~~~~~~~~~~i~lSAT~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (508)
T 3fho_A 269 DNMLDQQG--LGDQSMRI---KHLLPRNTQIVLFSATFSERVEKYAERFA--PNANEIRLKTEELSVEGIKQLYMDCQSE 341 (508)
T ss_dssp HHHTTC----CHHHHHHH---HHHSCTTCEEEEEESCCSTHHHHHHHHHS--TTCEEECCCCCC----CCCCEEEEC--C
T ss_pred hhhcccCC--cHHHHHHH---HHhCCcCCeEEEEeCCCCHHHHHHHHHhc--CCCeEEEeccccCCcccceEEEEECCch
Confidence 99987 44 55555444 3333 378899999999987765444333 33333221 12223333333333334
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccccc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GI 322 (724)
..+...+..++....+.++||||++++.++.++..|.+.|+.+..+||+++..+|..+++.|.+|+.+|||||+++++||
T Consensus 342 ~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~Gi 421 (508)
T 3fho_A 342 EHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGI 421 (508)
T ss_dssp HHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----C
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCC
Confidence 56677777887777778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEeeCCC------CCHHHHHHHHcccCCCCCCCeEEEEEcc-ccHHHHHHHHHh
Q 004900 323 DRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGM-DDRRRMEFILSK 376 (724)
Q Consensus 323 Dip~V~~VI~~d~P------~S~~~yiQr~GRAGRdG~~g~~il~~~~-~D~~~~~~i~~~ 376 (724)
|+|++++||++++| .++..|+||+|||||.|++|.|++|+.. .+...++.+.+.
T Consensus 422 Dip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~~ 482 (508)
T 3fho_A 422 DVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQEY 482 (508)
T ss_dssp CCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHHH
T ss_pred CccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHHH
Confidence 99999999999999 8899999999999999999999999984 444445555443
No 22
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=7e-40 Score=374.18 Aligned_cols=318 Identities=19% Similarity=0.265 Sum_probs=184.6
Q ss_pred CCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC--------CCeEEEEcCcHHHHHHHHHHHHHc----C
Q 004900 35 GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----G 102 (724)
Q Consensus 35 G~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~--------~~~vLVlsPl~aL~~qqv~~l~~~----g 102 (724)
+.-+|||+|.++++.++.|+|+++.+|||+|||++|++|++.. ++.+|||+|+++|+.|+.+.++.+ +
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 83 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQG 83 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 4457999999999999999999999999999999999998753 788999999999999999999886 7
Q ss_pred CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh-hh-hcCCccEEEEccccccccCCCCChHH
Q 004900 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHDFRPS 180 (724)
Q Consensus 103 i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~-~~-~~~~l~lIVIDEAH~l~~~G~dFrp~ 180 (724)
+.+..++++........... . ..+|+++||+.+.. .+.. .. ....+++|||||||++..|+.
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~---~---~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~vViDEah~~~~~~~----- 147 (556)
T 4a2p_A 84 YSVQGISGENFSNVSVEKVI---E---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP----- 147 (556)
T ss_dssp CCEEECCCC-----CHHHHH---H---HCSEEEECHHHHHH-----HHHSSSCCCSTTCSEEEEETGGGCSTTSH-----
T ss_pred ceEEEEeCCCCcchhHHHhh---C---CCCEEEECHHHHHH-----HHHhCcccccccCCEEEEECCcccCCcch-----
Confidence 88888777664433221111 1 26788888887542 1211 11 355689999999999998873
Q ss_pred HHHH-HHHH-hh----CCCCCEEEEeecCChh----------hHHHHHHhhccCCCeE-------eeccCCCCceEEEEE
Q 004900 181 YRKL-SSLR-NY----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVR 237 (724)
Q Consensus 181 y~~L-~~l~-~~----~p~~pil~LSAT~~~~----------v~~di~~~l~l~~~~v-------i~~s~~r~ni~~~v~ 237 (724)
|..+ ..+. .. .+..++++||||+... ....+...++...... +.....++...+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (556)
T 4a2p_A 148 YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLV 227 (556)
T ss_dssp HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEEC
T ss_pred HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEc
Confidence 3332 1121 11 3568899999999642 1122233332110000 000112232222111
Q ss_pred ec---c--------------------------------------------------------------------------
Q 004900 238 YK---D-------------------------------------------------------------------------- 240 (724)
Q Consensus 238 ~~---~-------------------------------------------------------------------------- 240 (724)
.. +
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (556)
T 4a2p_A 228 KRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEH 307 (556)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHH
T ss_pred CCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 10 0
Q ss_pred -------------------------------------------------------------chhhHHHHHHHHHHh----
Q 004900 241 -------------------------------------------------------------LLDDAYADLCSVLKA---- 255 (724)
Q Consensus 241 -------------------------------------------------------------~~~~k~~~L~~lLk~---- 255 (724)
....++..|.++|..
T Consensus 308 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~ 387 (556)
T 4a2p_A 308 LRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRY 387 (556)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcC
Confidence 002244445555543
Q ss_pred cCCceEEEEecccccHHHHHHHHHhC------------CCceeeecCCCCHHHHHHHHHHhhc-CCceEEEEcccccccc
Q 004900 256 NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMGI 322 (724)
Q Consensus 256 ~~~~~~IIf~~sr~~~e~La~~L~~~------------gi~v~~~H~~l~~~eR~~vl~~F~~-g~~~VLVAT~a~g~GI 322 (724)
..+.++||||+++..++.++..|... |..+..+||+|++.+|..++++|++ |+++|||||+++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 45679999999999999999999875 5556677889999999999999999 9999999999999999
Q ss_pred CCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHH
Q 004900 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (724)
Q Consensus 323 Dip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~ 370 (724)
|+|+|++|||||+|+|+..|+||+|| ||. .+|.+++++...+....
T Consensus 468 Dip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 468 DIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 513 (556)
T ss_dssp -----CEEEEETCCSCHHHHHHC----------CCEEEEESCHHHHHH
T ss_pred CchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCcchHHH
Confidence 99999999999999999999999999 999 78999999998776543
No 23
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=7.5e-40 Score=397.92 Aligned_cols=320 Identities=19% Similarity=0.249 Sum_probs=191.6
Q ss_pred HHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC--------CCeEEEEcCcHHHHHHHHHHHHHc--
Q 004900 32 WHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK-- 101 (724)
Q Consensus 32 ~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~--------~~~vLVlsPl~aL~~qqv~~l~~~-- 101 (724)
..+|+..|||+|.++|+.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+++.++++
T Consensus 242 ~l~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 321 (936)
T 4a2w_A 242 PVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (936)
T ss_dssp ------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 3456889999999999999999999999999999999999999864 788999999999999999999886
Q ss_pred --CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChH
Q 004900 102 --GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (724)
Q Consensus 102 --gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp 179 (724)
++.+..++++............ ..+|+++||+.+...... ........+++|||||||++...+.
T Consensus 322 ~~~~~v~~~~G~~~~~~~~~~~~~------~~~IvI~Tp~~L~~~l~~---~~~~~l~~~~liViDEaH~~~~~~~---- 388 (936)
T 4a2w_A 322 RQGYSVQGISGENFSNVSVEKVIE------DSDIIVVTPQILVNSFED---GTLTSLSIFTLMIFDECHNTTGNHP---- 388 (936)
T ss_dssp TTTCCEEEECCC-----CCHHHHH------HCSEEEECHHHHHHHHHS---SSCCCGGGCSEEEEETGGGCSTTCH----
T ss_pred ccCceEEEEECCcchhhHHHHhcc------CCCEEEecHHHHHHHHHc---CccccccCCCEEEEECccccCCCcc----
Confidence 7888888877644332111111 267888888875431100 0011234479999999999987542
Q ss_pred HHHHHH-HHHhh-----CCCCCEEEEeecCChh----------hHHHHHHhhccCCCeEee---------ccCCCCceEE
Q 004900 180 SYRKLS-SLRNY-----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLVLK---------SSFNRPNLFY 234 (724)
Q Consensus 180 ~y~~L~-~l~~~-----~p~~pil~LSAT~~~~----------v~~di~~~l~l~~~~vi~---------~s~~r~ni~~ 234 (724)
|..+. .+... .+..++++||||+... ....+...++.. .+.. ....++...+
T Consensus 389 -~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~--~i~~~~~~~~~l~~~~~~p~~~~ 465 (936)
T 4a2w_A 389 -YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQ--AISTVRENIQELQRFMNKPEIDV 465 (936)
T ss_dssp -HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCS--EEECCCSSHHHHHHHSCCCCEEE
T ss_pred -HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCc--eeecccccHHHHHHhccCCcceE
Confidence 33322 22222 4567899999999631 122223333211 1110 0112222222
Q ss_pred EEEec---------------------------------------c-----------------------------------
Q 004900 235 EVRYK---------------------------------------D----------------------------------- 240 (724)
Q Consensus 235 ~v~~~---------------------------------------~----------------------------------- 240 (724)
..... .
T Consensus 466 ~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~ 545 (936)
T 4a2w_A 466 RLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFIC 545 (936)
T ss_dssp EECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred EecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHH
Confidence 11110 0
Q ss_pred ----------------------------------------------------------------chhhHHHHHHHHHHh-
Q 004900 241 ----------------------------------------------------------------LLDDAYADLCSVLKA- 255 (724)
Q Consensus 241 ----------------------------------------------------------------~~~~k~~~L~~lLk~- 255 (724)
....++..|.++|..
T Consensus 546 ~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~ 625 (936)
T 4a2w_A 546 TEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDA 625 (936)
T ss_dssp HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHH
Confidence 001234445555554
Q ss_pred ---cCCceEEEEecccccHHHHHHHHHhC------------CCceeeecCCCCHHHHHHHHHHhhc-CCceEEEEccccc
Q 004900 256 ---NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFG 319 (724)
Q Consensus 256 ---~~~~~~IIf~~sr~~~e~La~~L~~~------------gi~v~~~H~~l~~~eR~~vl~~F~~-g~~~VLVAT~a~g 319 (724)
..+.++||||++++.++.|+..|... |..+..+||+|++.+|..++++|++ |+++|||||++++
T Consensus 626 ~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~ 705 (936)
T 4a2w_A 626 YRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVAD 705 (936)
T ss_dssp TTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC--
T ss_pred hccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchh
Confidence 35678999999999999999999986 5556677999999999999999999 9999999999999
Q ss_pred cccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHH
Q 004900 320 MGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRR 369 (724)
Q Consensus 320 ~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~ 369 (724)
+|||+|+|++|||||+|+|+..|+||+|| ||. ..|.+++++...+...
T Consensus 706 eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 706 EGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVE 753 (936)
T ss_dssp ----CCCCSEEEEESCCSCSHHHHCC---------CCCEEEEESCHHHHH
T ss_pred cCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCEEEEEEeCCCHHH
Confidence 99999999999999999999999999999 999 7889999998776543
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.2e-39 Score=383.14 Aligned_cols=328 Identities=22% Similarity=0.243 Sum_probs=244.8
Q ss_pred CCCCC--chHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHH---cCCCeEEEEcCcHHHH
Q 004900 17 NKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLIALM 91 (724)
Q Consensus 17 ~~~~~--~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal---~~~~~vLVlsPl~aL~ 91 (724)
|.+++ +++.+.+.++. +||.+|+|+|.++++.+..|+++++++|||+|||++|.+|++ ..++++||++|+++|+
T Consensus 3 f~~l~~~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La 81 (702)
T 2p6r_A 3 VEELAESISSYAVGILKE-EGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALA 81 (702)
T ss_dssp SHHHHHHHHHHHHHHHHC-C---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHH
T ss_pred hhhhhhccCHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHH
Confidence 44555 77888888877 899999999999999999999999999999999999999887 4578999999999999
Q ss_pred HHHHHHHHH---cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhh-hhcCCccEEEEccc
Q 004900 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDEA 167 (724)
Q Consensus 92 ~qqv~~l~~---~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~-~~~~~l~lIVIDEA 167 (724)
.|+++.++. +|+.+..+.+....... .....+|+++|||.+.. .+... .....+++||||||
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~---------~~~~~~Iiv~Tpe~l~~-----~l~~~~~~l~~~~~vIiDE~ 147 (702)
T 2p6r_A 82 GEKYESFKKWEKIGLRIGISTGDYESRDE---------HLGDCDIIVTTSEKADS-----LIRNRASWIKAVSCLVVDEI 147 (702)
T ss_dssp HHHHHHHTTTTTTTCCEEEECSSCBCCSS---------CSTTCSEEEEEHHHHHH-----HHHTTCSGGGGCCEEEETTG
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCCcchh---------hccCCCEEEECHHHHHH-----HHHcChhHHhhcCEEEEeee
Confidence 999999854 36777766665433211 01247899999987642 11111 11345899999999
Q ss_pred cccccCCCCChHHHHH-HHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEE------ecc
Q 004900 168 HCISSWGHDFRPSYRK-LSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR------YKD 240 (724)
Q Consensus 168 H~l~~~G~dFrp~y~~-L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~------~~~ 240 (724)
|++.+|+ +.+.+.. +..++...++.++++||||+++ ..++..+++. ..+..+.....+...+. ..+
T Consensus 148 H~l~~~~--r~~~~~~ll~~l~~~~~~~~ii~lSATl~n--~~~~~~~l~~---~~~~~~~r~~~l~~~~~~~~~~~~~~ 220 (702)
T 2p6r_A 148 HLLDSEK--RGATLEILVTKMRRMNKALRVIGLSATAPN--VTEIAEWLDA---DYYVSDWRPVPLVEGVLCEGTLELFD 220 (702)
T ss_dssp GGGGCTT--THHHHHHHHHHHHHHCTTCEEEEEECCCTT--HHHHHHHTTC---EEEECCCCSSCEEEEEECSSEEEEEE
T ss_pred eecCCCC--cccHHHHHHHHHHhcCcCceEEEECCCcCC--HHHHHHHhCC---CcccCCCCCccceEEEeeCCeeeccC
Confidence 9999876 3444443 3445555678999999999986 3567777652 12222211111111110 000
Q ss_pred ------chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC------------------------------CCc
Q 004900 241 ------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------------------GIS 284 (724)
Q Consensus 241 ------~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~------------------------------gi~ 284 (724)
........+.+.+. .++++||||++++.++.++..|.+. +..
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 298 (702)
T 2p6r_A 221 GAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKG 298 (702)
T ss_dssp TTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTT
T ss_pred cchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcC
Confidence 00014555555554 3568999999999999999998753 135
Q ss_pred eeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEe----eC---CCCCHHHHHHHHcccCCCC--CC
Q 004900 285 CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN---IPKSMEAFYQESGRAGRDQ--LP 355 (724)
Q Consensus 285 v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~----~d---~P~S~~~yiQr~GRAGRdG--~~ 355 (724)
+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.| .+
T Consensus 299 v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~ 378 (702)
T 2p6r_A 299 AAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDER 378 (702)
T ss_dssp CCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSC
T ss_pred eEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCC
Confidence 788999999999999999999999999999999999999999999999 66 7899999999999999998 47
Q ss_pred CeEEEEEccccHH
Q 004900 356 SKSLLYYGMDDRR 368 (724)
Q Consensus 356 g~~il~~~~~D~~ 368 (724)
|.|++++...+..
T Consensus 379 G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 379 GEAIIIVGKRDRE 391 (702)
T ss_dssp EEEEEECCGGGHH
T ss_pred ceEEEEecCccHH
Confidence 8999999988743
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-39 Score=399.20 Aligned_cols=336 Identities=17% Similarity=0.138 Sum_probs=242.1
Q ss_pred CCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHH
Q 004900 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMEN 93 (724)
Q Consensus 17 ~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~q 93 (724)
+..+++.+.+...+...|+| .|+|+|.++|+++..|++++++||||+|||++|++|++. .++++||++|+++|+.|
T Consensus 164 ~~~~~l~~~~~~~~~~~~~f-~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q 242 (1108)
T 3l9o_A 164 YDYTPIAEHKRVNEARTYPF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQ 242 (1108)
T ss_dssp CCSSTTTTTCCCSCSSCCSS-CCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred cccCCCChhhhHHHHHhCCC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHH
Confidence 44455555555555555555 499999999999999999999999999999999999875 58899999999999999
Q ss_pred HHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccC
Q 004900 94 QVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (724)
Q Consensus 94 qv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~ 173 (724)
+++.+......+..+.++.. ..+..+|+++||+++...... .......+++|||||||++.+|
T Consensus 243 ~~~~l~~~~~~VglltGd~~-------------~~~~~~IlV~Tpe~L~~~L~~----~~~~l~~l~lVVIDEaH~l~d~ 305 (1108)
T 3l9o_A 243 KYRELLAEFGDVGLMTGDIT-------------INPDAGCLVMTTEILRSMLYR----GSEVMREVAWVIFDEVHYMRDK 305 (1108)
T ss_dssp HHHHHHHHTSSEEEECSSCB-------------CCCSCSEEEEEHHHHHHHHHH----CSSHHHHEEEEEEETGGGTTSH
T ss_pred HHHHHHHHhCCccEEeCccc-------------cCCCCCEEEeChHHHHHHHHc----CccccccCCEEEEhhhhhcccc
Confidence 99999997667776666543 123578999999876432111 1111234899999999999988
Q ss_pred CCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhc--cCCCeEeeccCCCC-ceEEEEEe-----------
Q 004900 174 GHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLC--LQNPLVLKSSFNRP-NLFYEVRY----------- 238 (724)
Q Consensus 174 G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~--l~~~~vi~~s~~r~-ni~~~v~~----------- 238 (724)
+ |...+..+ ...+ +++++++||||++... ++..+++ ...+..+.....+| .+...+..
T Consensus 306 ~--rg~~~e~i---i~~l~~~~qvl~lSATipn~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd 378 (1108)
T 3l9o_A 306 E--RGVVWEET---IILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVD 378 (1108)
T ss_dssp H--HHHHHHHH---HHHSCTTSEEEEEECSCSSCH--HHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEE
T ss_pred c--hHHHHHHH---HHhcCCCceEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeec
Confidence 7 45555444 3333 4789999999987652 2233322 12333222222222 12111110
Q ss_pred -ccc------------------------------------------hhhHHHHHHHHHHhcCCceEEEEecccccHHHHH
Q 004900 239 -KDL------------------------------------------LDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (724)
Q Consensus 239 -~~~------------------------------------------~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La 275 (724)
... ....+..+...+...+..++||||++++.|+.++
T Consensus 379 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la 458 (1108)
T 3l9o_A 379 EKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELA 458 (1108)
T ss_dssp TTTEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHH
Confidence 000 0223334555555566778999999999999999
Q ss_pred HHHHhCCCc---------------------------------------eeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 276 AYLSAGGIS---------------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 276 ~~L~~~gi~---------------------------------------v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
..|...|+. +..+||+|++.+|..+++.|.+|.++|||||+
T Consensus 459 ~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~ 538 (1108)
T 3l9o_A 459 LKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATE 538 (1108)
T ss_dssp HHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEES
T ss_pred HHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECc
Confidence 998653322 68899999999999999999999999999999
Q ss_pred ccccccCCCCcceEEeeCC--------CCCHHHHHHHHcccCCCC--CCCeEEEEEccc-cHHHHHHHHHhc
Q 004900 317 AFGMGIDRKDVRLVCHFNI--------PKSMEAFYQESGRAGRDQ--LPSKSLLYYGMD-DRRRMEFILSKN 377 (724)
Q Consensus 317 a~g~GIDip~V~~VI~~d~--------P~S~~~yiQr~GRAGRdG--~~g~~il~~~~~-D~~~~~~i~~~~ 377 (724)
++++|||+|++++||+++. |-|+.+|+||+|||||.| ..|.|++++... +...+..++...
T Consensus 539 vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~ 610 (1108)
T 3l9o_A 539 TFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 610 (1108)
T ss_dssp CCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCC
T ss_pred HHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCC
Confidence 9999999999999998776 347888999999999999 688899988765 455566666543
No 26
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2e-39 Score=369.56 Aligned_cols=314 Identities=20% Similarity=0.258 Sum_probs=209.1
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC--------CCeEEEEcCcHHHHHHHHHHHHHc----CCce
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK----GIAG 105 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~--------~~~vLVlsPl~aL~~qqv~~l~~~----gi~~ 105 (724)
.|||+|.++++.++.|+++++.+|||+|||++|++|++.. ++.+|||+|+++|+.|+.+.++.+ ++.+
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~ 83 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNI 83 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEE
Confidence 5899999999999999999999999999999999998753 788999999999999999999886 8888
Q ss_pred eeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh-hh-hcCCccEEEEccccccccCCCCChHHHHH
Q 004900 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (724)
Q Consensus 106 ~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~-~~-~~~~l~lIVIDEAH~l~~~G~dFrp~y~~ 183 (724)
..++++............ ..+|+++||+.+.. .+.. .. ....+++|||||||++..++. |..
T Consensus 84 ~~~~g~~~~~~~~~~~~~------~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~~vViDEah~~~~~~~-----~~~ 147 (555)
T 3tbk_A 84 ASISGATSDSVSVQHIIE------DNDIIILTPQILVN-----NLNNGAIPSLSVFTLMIFDECHNTSKNHP-----YNQ 147 (555)
T ss_dssp EEECTTTGGGSCHHHHHH------HCSEEEECHHHHHH-----HHHTSSSCCGGGCSEEEETTGGGCSTTCH-----HHH
T ss_pred EEEcCCCcchhhHHHHhc------CCCEEEECHHHHHH-----HHhcCcccccccCCEEEEECccccCCcch-----HHH
Confidence 888777654432111111 26788888887543 1111 11 344589999999999988652 333
Q ss_pred H-HHHH-hh-----CCCCCEEEEeecCChhh-------HH---HHHHhhccCCCeEee---------ccCCCCceEEEEE
Q 004900 184 L-SSLR-NY-----LPDVPILALTATAAPKV-------QK---DVMESLCLQNPLVLK---------SSFNRPNLFYEVR 237 (724)
Q Consensus 184 L-~~l~-~~-----~p~~pil~LSAT~~~~v-------~~---di~~~l~l~~~~vi~---------~s~~r~ni~~~v~ 237 (724)
+ ..+. .. .+..++++||||+.... .. .+...++. ..+.. ....++...+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~ 225 (555)
T 3tbk_A 148 IMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA--SVIATVRDNVAELEQVVYKPQKISRKV 225 (555)
T ss_dssp HHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC--SEEECCCSCHHHHHTTCCCCCEEEEEC
T ss_pred HHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC--eeeeccccCHHHHHhhcCCCceEEEEe
Confidence 2 1222 21 15678999999996532 22 22333321 11111 1122333332221
Q ss_pred ecc-----------------------------------------------------------------------------
Q 004900 238 YKD----------------------------------------------------------------------------- 240 (724)
Q Consensus 238 ~~~----------------------------------------------------------------------------- 240 (724)
...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (555)
T 3tbk_A 226 ASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTS 305 (555)
T ss_dssp CCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHH
T ss_pred cCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHH
Confidence 100
Q ss_pred --------------------------------------------------------------chhhHHHHHHHHHHh---
Q 004900 241 --------------------------------------------------------------LLDDAYADLCSVLKA--- 255 (724)
Q Consensus 241 --------------------------------------------------------------~~~~k~~~L~~lLk~--- 255 (724)
....++..|.++|..
T Consensus 306 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~ 385 (555)
T 3tbk_A 306 HLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYH 385 (555)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhc
Confidence 002244445555543
Q ss_pred -cCCceEEEEecccccHHHHHHHHHhCC------------CceeeecCCCCHHHHHHHHHHhhc-CCceEEEEccccccc
Q 004900 256 -NGDTCAIVYCLERTTCDELSAYLSAGG------------ISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVAFGMG 321 (724)
Q Consensus 256 -~~~~~~IIf~~sr~~~e~La~~L~~~g------------i~v~~~H~~l~~~eR~~vl~~F~~-g~~~VLVAT~a~g~G 321 (724)
.++.++||||+++..++.++..|...| .....+||+|++++|..++++|++ |+++|||||+++++|
T Consensus 386 ~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~G 465 (555)
T 3tbk_A 386 LKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEG 465 (555)
T ss_dssp HCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCC
T ss_pred cCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcC
Confidence 456899999999999999999999864 344556679999999999999999 999999999999999
Q ss_pred cCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHH
Q 004900 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRME 371 (724)
Q Consensus 322 IDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~ 371 (724)
||+|+|++|||||+|+|+..|+||+|| ||. .+|.+++|+...+.....
T Consensus 466 lDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 466 IDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFLLTSSADVIEKE 513 (555)
T ss_dssp EETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEEEESCHHHHHHH
T ss_pred CccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEEEEcCCCHHHHH
Confidence 999999999999999999999999999 999 899999999988765543
No 27
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=1.1e-38 Score=391.54 Aligned_cols=292 Identities=16% Similarity=0.201 Sum_probs=221.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH
Q 004900 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
+++.+.++..+|| +|+|+|.++|+.++.|+|++++||||+|||++|+++++. .++.+|||+||++|+.|+++.++.
T Consensus 65 ~~~~~~~~~~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 65 EDFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp HHHHHHHHHHSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH
Confidence 4455677778899 599999999999999999999999999999998888765 678999999999999999999999
Q ss_pred ---cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCC---
Q 004900 101 ---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWG--- 174 (724)
Q Consensus 101 ---~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G--- 174 (724)
.++.+..++++.....+......+..+. .+|+++||+.+.. +........+++|||||||++..++
T Consensus 144 l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~--~~IlV~Tp~rL~~------~l~~l~~~~l~~lViDEaH~l~~~~r~~ 215 (1104)
T 4ddu_A 144 LADEKVKIFGFYSSMKKEEKEKFEKSFEEDD--YHILVFSTQFVSK------NREKLSQKRFDFVFVDDVDAVLKASRNI 215 (1104)
T ss_dssp TSCTTSCEEEECTTCCTTHHHHHHHHHHTSC--CSEEEEEHHHHHH------SHHHHHTSCCSEEEESCHHHHTTSSHHH
T ss_pred hhCCCCeEEEEeCCCCHHHHHHHHHHHhCCC--CCEEEECHHHHHH------HHHhhcccCcCEEEEeCCCccccccccc
Confidence 4578888888887766666666666553 6788888776532 2222445679999999999887633
Q ss_pred ------CCChHH-HHHHHHHHh------hC---CCCCEEEEeecCCh-hhHHHHHHhhccCCCeEeeccCCCCceEEEEE
Q 004900 175 ------HDFRPS-YRKLSSLRN------YL---PDVPILALTATAAP-KVQKDVMESLCLQNPLVLKSSFNRPNLFYEVR 237 (724)
Q Consensus 175 ------~dFrp~-y~~L~~l~~------~~---p~~pil~LSAT~~~-~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~ 237 (724)
..|.+. +..+..... .+ ++.++++||||+.+ .+...+...+. ...+........++...+.
T Consensus 216 Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l--~i~v~~~~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 216 DTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL--NFTVGRLVSVARNITHVRI 293 (1104)
T ss_dssp HHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT--CCCCCBCCCCCCCEEEEEE
T ss_pred hhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce--eEEeccCCCCcCCceeEEE
Confidence 236666 444433322 01 47899999999544 33323332221 1112222334556655554
Q ss_pred eccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCcee-eecCCCCHHHHHHHHHHhhcCCceEEEE--
Q 004900 238 YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA-AYHAGLNDKARSSVLDDWISSRKQVVVA-- 314 (724)
Q Consensus 238 ~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~-~~H~~l~~~eR~~vl~~F~~g~~~VLVA-- 314 (724)
.. ++...|..+++..+ .++||||++++.++.++..|...|+.+. .+|| +|.. +++|.+|+++||||
T Consensus 294 ~~----~k~~~L~~ll~~~~-~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVata 362 (1104)
T 4ddu_A 294 SS----RSKEKLVELLEIFR-DGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQ 362 (1104)
T ss_dssp SC----CCHHHHHHHHHHHC-SSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEET
T ss_pred ec----CHHHHHHHHHHhcC-CCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEec
Confidence 44 23455666666643 6899999999999999999999999998 9999 2555 99999999999999
Q ss_pred --ccccccccCCCC-cceEEeeCCCC
Q 004900 315 --TVAFGMGIDRKD-VRLVCHFNIPK 337 (724)
Q Consensus 315 --T~a~g~GIDip~-V~~VI~~d~P~ 337 (724)
|+++++|||+|+ |++|||||+|.
T Consensus 363 s~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 363 AYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp TTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999 99999999998
No 28
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.7e-38 Score=374.39 Aligned_cols=324 Identities=20% Similarity=0.253 Sum_probs=242.4
Q ss_pred cCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHH
Q 004900 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIAL 90 (724)
Q Consensus 16 ~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~a-il~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL 90 (724)
.|.++++++.+.+.++. +||.+|+|+|.++++. +..++++++++|||+|||++|.++++. .++++||++|+++|
T Consensus 9 ~~~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~L 87 (715)
T 2va8_A 9 PIEDLKLPSNVIEIIKK-RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRAL 87 (715)
T ss_dssp BGGGSSSCHHHHHHHHT-TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHH
T ss_pred cHHHcCCCHHHHHHHHh-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHH
Confidence 47778899999999988 8999999999999999 778999999999999999999998862 57899999999999
Q ss_pred HHHHHHHHHH---cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhh-hhcCCccEEEEcc
Q 004900 91 MENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI-HSRGLLNLVAIDE 166 (724)
Q Consensus 91 ~~qqv~~l~~---~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~-~~~~~l~lIVIDE 166 (724)
+.|+++.++. +|+.+..+.+....... .+ ...+|+++|||.+..- +... .....+++|||||
T Consensus 88 a~q~~~~~~~~~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l~~~-----~~~~~~~l~~~~~vIiDE 153 (715)
T 2va8_A 88 TNEKYLTFKDWELIGFKVAMTSGDYDTDDA-----WL----KNYDIIITTYEKLDSL-----WRHRPEWLNEVNYFVLDE 153 (715)
T ss_dssp HHHHHHHHGGGGGGTCCEEECCSCSSSCCG-----GG----GGCSEEEECHHHHHHH-----HHHCCGGGGGEEEEEECS
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCCCCchh-----hc----CCCCEEEEcHHHHHHH-----HhCChhHhhccCEEEEec
Confidence 9999999854 46777766655433221 11 1478999999876431 1111 1144689999999
Q ss_pred ccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCC------------CceEE
Q 004900 167 AHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNR------------PNLFY 234 (724)
Q Consensus 167 AH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r------------~ni~~ 234 (724)
||++.+++ +.+.+..+ ....++.++++||||+++. .++..+++.. .+...... .+..+
T Consensus 154 ~H~l~~~~--~~~~l~~i---~~~~~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~r~~~l~~~~~~~~~~~~~~ 223 (715)
T 2va8_A 154 LHYLNDPE--RGPVVESV---TIRAKRRNLLALSATISNY--KQIAKWLGAE---PVATNWRPVPLIEGVIYPERKKKEY 223 (715)
T ss_dssp GGGGGCTT--THHHHHHH---HHHHHTSEEEEEESCCTTH--HHHHHHHTCE---EEECCCCSSCEEEEEEEECSSTTEE
T ss_pred hhhcCCcc--cchHHHHH---HHhcccCcEEEEcCCCCCH--HHHHHHhCCC---ccCCCCCCCCceEEEEecCCcccce
Confidence 99998765 44444333 3333488999999999853 5667776531 11111111 11111
Q ss_pred EEEecc-------chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCC-------------------------
Q 004900 235 EVRYKD-------LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGG------------------------- 282 (724)
Q Consensus 235 ~v~~~~-------~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~g------------------------- 282 (724)
.+...+ .....+..+.+.+. .++++||||++++.++.++..|.+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 301 (715)
T 2va8_A 224 NVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGS 301 (715)
T ss_dssp EEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCH
T ss_pred eeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccc
Confidence 111111 01344555555553 45789999999999999999998642
Q ss_pred -----------CceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEe----eC-------CCCCHH
Q 004900 283 -----------ISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN-------IPKSME 340 (724)
Q Consensus 283 -----------i~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~----~d-------~P~S~~ 340 (724)
..+..+||+|+.++|..+++.|.+|.++|||||+++++|||+|++++||+ || .|.|..
T Consensus 302 ~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~ 381 (715)
T 2va8_A 302 DEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIM 381 (715)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHH
T ss_pred cccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHH
Confidence 24889999999999999999999999999999999999999999999999 99 899999
Q ss_pred HHHHHHcccCCCCC--CCeEEEEEcccc
Q 004900 341 AFYQESGRAGRDQL--PSKSLLYYGMDD 366 (724)
Q Consensus 341 ~yiQr~GRAGRdG~--~g~~il~~~~~D 366 (724)
+|.||+|||||.|. +|.|++++...+
T Consensus 382 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 382 EYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred HHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 99999999999984 789999998776
No 29
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=8.3e-38 Score=347.51 Aligned_cols=314 Identities=19% Similarity=0.242 Sum_probs=235.5
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHHHHHHHHHHHc-CC---ceeeec
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEK-GI---AGEFLS 109 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~~qqv~~l~~~-gi---~~~~l~ 109 (724)
+|+|+|.+++..++.+ ++++.+|||+|||++++++++. .++++|||+|+++|+.||.+.+.++ ++ .+..++
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~ 87 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALT 87 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEEC
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEee
Confidence 5899999999999999 9999999999999999988765 4789999999999999999999986 55 677777
Q ss_pred ccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHH-HHHH
Q 004900 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKL-SSLR 188 (724)
Q Consensus 110 s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L-~~l~ 188 (724)
+..........+. ..+|+++||+.+..... ........+++|||||||++.... .|..+ ..+.
T Consensus 88 g~~~~~~~~~~~~-------~~~ivv~T~~~l~~~~~----~~~~~~~~~~~vIiDEaH~~~~~~-----~~~~~~~~~~ 151 (494)
T 1wp9_A 88 GEKSPEERSKAWA-------RAKVIVATPQTIENDLL----AGRISLEDVSLIVFDEAHRAVGNY-----AYVFIAREYK 151 (494)
T ss_dssp SCSCHHHHHHHHH-------HCSEEEECHHHHHHHHH----TTSCCTTSCSEEEEETGGGCSTTC-----HHHHHHHHHH
T ss_pred CCcchhhhhhhcc-------CCCEEEecHHHHHHHHh----cCCcchhhceEEEEECCcccCCCC-----cHHHHHHHHH
Confidence 7666554443332 26789999887653211 112235568999999999997532 23333 3344
Q ss_pred hhCCCCCEEEEeecCChh--hHHHHHHhhccCCCeEeecc-------CCCCceEEEEEec--------------------
Q 004900 189 NYLPDVPILALTATAAPK--VQKDVMESLCLQNPLVLKSS-------FNRPNLFYEVRYK-------------------- 239 (724)
Q Consensus 189 ~~~p~~pil~LSAT~~~~--v~~di~~~l~l~~~~vi~~s-------~~r~ni~~~v~~~-------------------- 239 (724)
...+..++++||||+... ...++...++...+...... +......+.....
T Consensus 152 ~~~~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (494)
T 1wp9_A 152 RQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALK 231 (494)
T ss_dssp HHCSSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHH
Confidence 456688999999999833 33445555543322111000 0000111100000
Q ss_pred --------------------------------------------------------------------------------
Q 004900 240 -------------------------------------------------------------------------------- 239 (724)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (724)
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (494)
T 1wp9_A 232 PLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAG 311 (494)
T ss_dssp HHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccc
Confidence
Q ss_pred ---------------------------cchhhHHHHHHHHHHh----cCCceEEEEecccccHHHHHHHHHhCCCceeee
Q 004900 240 ---------------------------DLLDDAYADLCSVLKA----NGDTCAIVYCLERTTCDELSAYLSAGGISCAAY 288 (724)
Q Consensus 240 ---------------------------~~~~~k~~~L~~lLk~----~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~ 288 (724)
.....++..|.+++.. ..+.++||||+++..++.++..|...|+.+..+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~ 391 (494)
T 1wp9_A 312 STKASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF 391 (494)
T ss_dssp CCHHHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEE
Confidence 0112244555566655 467899999999999999999999999999999
Q ss_pred cC--------CCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEE
Q 004900 289 HA--------GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLL 360 (724)
Q Consensus 289 H~--------~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il 360 (724)
|| +|+..+|..++++|.+|+.+|||||+++++|||+|++++||+|++|+++..|+||+||+||.|+ |.++.
T Consensus 392 ~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~ 470 (494)
T 1wp9_A 392 VGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVII 470 (494)
T ss_dssp CCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEE
T ss_pred eccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEE
Confidence 99 9999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred EEccccHHH
Q 004900 361 YYGMDDRRR 369 (724)
Q Consensus 361 ~~~~~D~~~ 369 (724)
++..++...
T Consensus 471 l~~~~t~ee 479 (494)
T 1wp9_A 471 LMAKGTRDE 479 (494)
T ss_dssp EEETTSHHH
T ss_pred EEecCCHHH
Confidence 999887653
No 30
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=9.1e-39 Score=378.88 Aligned_cols=325 Identities=21% Similarity=0.281 Sum_probs=246.4
Q ss_pred CCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHH-HHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHH
Q 004900 17 NKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALM 91 (724)
Q Consensus 17 ~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~a-il~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~ 91 (724)
|.++++++.+.+.++. +||..|+|+|.++++. +..|+++++++|||+|||++|.+|++. .++++||++|+++|+
T Consensus 3 f~~l~l~~~~~~~l~~-~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa 81 (720)
T 2zj8_A 3 VDELRVDERIKSTLKE-RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALA 81 (720)
T ss_dssp GGGCCSCHHHHHHHHH-TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGH
T ss_pred HhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHH
Confidence 6678899999999988 8999999999999998 889999999999999999999998873 478999999999999
Q ss_pred HHHHHHHHH---cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh-hhhcCCccEEEEccc
Q 004900 92 ENQVIGLKE---KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IHSRGLLNLVAIDEA 167 (724)
Q Consensus 92 ~qqv~~l~~---~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~-~~~~~~l~lIVIDEA 167 (724)
.|+++.++. +|+.+..+++....... .. ...+|+++|||.+..- +.. ......+++||||||
T Consensus 82 ~q~~~~~~~l~~~g~~v~~~~G~~~~~~~-----~~----~~~~Iiv~Tpe~l~~~-----~~~~~~~l~~~~~vIiDE~ 147 (720)
T 2zj8_A 82 EEKFQEFQDWEKIGLRVAMATGDYDSKDE-----WL----GKYDIIIATAEKFDSL-----LRHGSSWIKDVKILVADEI 147 (720)
T ss_dssp HHHHHHTGGGGGGTCCEEEECSCSSCCCG-----GG----GGCSEEEECHHHHHHH-----HHHTCTTGGGEEEEEEETG
T ss_pred HHHHHHHHHHHhcCCEEEEecCCCCcccc-----cc----CCCCEEEECHHHHHHH-----HHcChhhhhcCCEEEEECC
Confidence 999999864 47787777765433221 01 1478999999876431 111 111345899999999
Q ss_pred cccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCc-eEEEEE------ecc
Q 004900 168 HCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN-LFYEVR------YKD 240 (724)
Q Consensus 168 H~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~n-i~~~v~------~~~ 240 (724)
|++.+|+ +.+.+..+-.... ++.++++||||+++. .++..+++.. .+..+. +|. +...+. ...
T Consensus 148 H~l~~~~--r~~~~~~ll~~l~--~~~~ii~lSATl~n~--~~~~~~l~~~---~~~~~~-rp~~l~~~~~~~~~~~~~~ 217 (720)
T 2zj8_A 148 HLIGSRD--RGATLEVILAHML--GKAQIIGLSATIGNP--EELAEWLNAE---LIVSDW-RPVKLRRGVFYQGFVTWED 217 (720)
T ss_dssp GGGGCTT--THHHHHHHHHHHB--TTBEEEEEECCCSCH--HHHHHHTTEE---EEECCC-CSSEEEEEEEETTEEEETT
T ss_pred cccCCCc--ccHHHHHHHHHhh--cCCeEEEEcCCcCCH--HHHHHHhCCc---ccCCCC-CCCcceEEEEeCCeeeccc
Confidence 9998865 3344443322221 278999999999763 5667776531 121111 111 111110 111
Q ss_pred ----chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC------------------C---------------C
Q 004900 241 ----LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG------------------G---------------I 283 (724)
Q Consensus 241 ----~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~------------------g---------------i 283 (724)
.....+..+.+.+.. +.++||||++++.++.++..|.+. + .
T Consensus 218 ~~~~~~~~~~~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~ 295 (720)
T 2zj8_A 218 GSIDRFSSWEELVYDAIRK--KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRG 295 (720)
T ss_dssp SCEEECSSTTHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTT
T ss_pred cchhhhhHHHHHHHHHHhC--CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhc
Confidence 012334555555543 468999999999999999999753 1 2
Q ss_pred ceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEe----eC----CCCCHHHHHHHHcccCCCC--
Q 004900 284 SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN----IPKSMEAFYQESGRAGRDQ-- 353 (724)
Q Consensus 284 ~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~----~d----~P~S~~~yiQr~GRAGRdG-- 353 (724)
.+..+||+|+.++|..+++.|.+|.++|||||+++++|||+|++++||+ || .|.|..+|+||+|||||.|
T Consensus 296 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~ 375 (720)
T 2zj8_A 296 GVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD 375 (720)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC
T ss_pred CeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC
Confidence 4889999999999999999999999999999999999999999999999 77 6899999999999999998
Q ss_pred CCCeEEEEEccccHH
Q 004900 354 LPSKSLLYYGMDDRR 368 (724)
Q Consensus 354 ~~g~~il~~~~~D~~ 368 (724)
..|.|++++...+..
T Consensus 376 ~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 376 EVGEGIIVSTSDDPR 390 (720)
T ss_dssp SEEEEEEECSSSCHH
T ss_pred CCceEEEEecCccHH
Confidence 478899999988744
No 31
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=3e-38 Score=378.48 Aligned_cols=323 Identities=19% Similarity=0.251 Sum_probs=191.4
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC--------CCeEEEEcCcHHHHHHHHHHHHHc
Q 004900 30 LRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------PGIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 30 L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~--------~~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
....+|+..|||+|.++|+.++.|+++++.+|||+|||++|++|++.. ++++|||+|+++|+.|+++.++++
T Consensus 240 ~~~~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 240 PPPVYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp --------CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred chhhcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 344578999999999999999999999999999999999999998753 789999999999999999999886
Q ss_pred ----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh-hh-hcCCccEEEEccccccccCCC
Q 004900 102 ----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK-IH-SRGLLNLVAIDEAHCISSWGH 175 (724)
Q Consensus 102 ----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~-~~-~~~~l~lIVIDEAH~l~~~G~ 175 (724)
++.+..++++........... . ..+|+++||+.+.. .+.. .. ....+++|||||||++...+.
T Consensus 320 ~~~~~~~v~~~~g~~~~~~~~~~~~---~---~~~Ivv~Tp~~l~~-----~l~~~~~~~~~~~~~iViDEaH~~~~~~~ 388 (797)
T 4a2q_A 320 FERQGYSVQGISGENFSNVSVEKVI---E---DSDIIVVTPQILVN-----SFEDGTLTSLSIFTLMIFDECHNTTGNHP 388 (797)
T ss_dssp HGGGTCCEEEECCC-----CHHHHH---H---TCSEEEECHHHHHH-----HHHSSSCCCGGGCSEEEETTGGGCSTTSH
T ss_pred cccCCceEEEEeCCcchhhhHHHhh---C---CCCEEEEchHHHHH-----HHHhccccccccCCEEEEECccccCCCcc
Confidence 888888887765443222111 1 36799999887542 1111 11 234579999999999987431
Q ss_pred CChHHHHHHH-HHHhh-----CCCCCEEEEeecCChh----------hHHHHHHhhccCCCeE-------eeccCCCCce
Q 004900 176 DFRPSYRKLS-SLRNY-----LPDVPILALTATAAPK----------VQKDVMESLCLQNPLV-------LKSSFNRPNL 232 (724)
Q Consensus 176 dFrp~y~~L~-~l~~~-----~p~~pil~LSAT~~~~----------v~~di~~~l~l~~~~v-------i~~s~~r~ni 232 (724)
|..+. .+... .+..++++||||+... ....+...++...... +.....++..
T Consensus 389 -----~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~ 463 (797)
T 4a2q_A 389 -----YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEI 463 (797)
T ss_dssp -----HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCC
T ss_pred -----HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCce
Confidence 33321 22221 4568899999999631 2222333332110000 0001122222
Q ss_pred EEEEEec---------------------------------------c---------------------------------
Q 004900 233 FYEVRYK---------------------------------------D--------------------------------- 240 (724)
Q Consensus 233 ~~~v~~~---------------------------------------~--------------------------------- 240 (724)
.+..... .
T Consensus 464 ~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 543 (797)
T 4a2q_A 464 DVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALF 543 (797)
T ss_dssp EEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHH
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 2211110 0
Q ss_pred ------------------------------------------------------------------chhhHHHHHHHHHH
Q 004900 241 ------------------------------------------------------------------LLDDAYADLCSVLK 254 (724)
Q Consensus 241 ------------------------------------------------------------------~~~~k~~~L~~lLk 254 (724)
....++..|.++|.
T Consensus 544 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~ 623 (797)
T 4a2q_A 544 ICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILD 623 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHH
Confidence 00124444555554
Q ss_pred h----cCCceEEEEecccccHHHHHHHHHhC------------CCceeeecCCCCHHHHHHHHHHhhc-CCceEEEEccc
Q 004900 255 A----NGDTCAIVYCLERTTCDELSAYLSAG------------GISCAAYHAGLNDKARSSVLDDWIS-SRKQVVVATVA 317 (724)
Q Consensus 255 ~----~~~~~~IIf~~sr~~~e~La~~L~~~------------gi~v~~~H~~l~~~eR~~vl~~F~~-g~~~VLVAT~a 317 (724)
. ..+.++||||+++..++.|+..|... |..+..+||+|++.+|..++++|++ |+++|||||++
T Consensus 624 ~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~ 703 (797)
T 4a2q_A 624 DAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSV 703 (797)
T ss_dssp HHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC
T ss_pred HHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCc
Confidence 3 55689999999999999999999873 5566778999999999999999999 99999999999
Q ss_pred cccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHH
Q 004900 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRM 370 (724)
Q Consensus 318 ~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~ 370 (724)
+++|||+|+|++|||||+|+|+..|+||+|| ||. .+|.+++|+...+....
T Consensus 704 ~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 704 ADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKCILVTSKTEVVEN 754 (797)
T ss_dssp -------CCCSEEEEESCCSCHHHHHTC---------CCCEEEEECCHHHHHH
T ss_pred hhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceEEEEEeCCcHHHH
Confidence 9999999999999999999999999999999 999 89999999988776433
No 32
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=379.46 Aligned_cols=322 Identities=18% Similarity=0.197 Sum_probs=239.6
Q ss_pred HHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHHcCCceee
Q 004900 31 RWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (724)
Q Consensus 31 ~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~ 107 (724)
...|||. |+|+|.++|+.+..|+++++++|||+|||++|+++++. .++++||++|+++|+.|+++.+......+..
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgl 158 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGL 158 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEE
T ss_pred HHhCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEE
Confidence 4557886 99999999999999999999999999999999888764 6789999999999999999999985446666
Q ss_pred ecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHH
Q 004900 108 LSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (724)
Q Consensus 108 l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l 187 (724)
+.++.... +..+|+++|||++....+ ........+++|||||||++.+|+. ...+ ..+
T Consensus 159 ltGd~~~~-------------~~~~IvV~Tpe~L~~~L~----~~~~~l~~l~lVViDEaH~l~d~~r--g~~~---e~i 216 (1010)
T 2xgj_A 159 MTGDITIN-------------PDAGCLVMTTEILRSMLY----RGSEVMREVAWVIFDEVHYMRDKER--GVVW---EET 216 (1010)
T ss_dssp ECSSCEEC-------------TTCSEEEEEHHHHHHHHH----HTCTTGGGEEEEEEETGGGGGCTTT--HHHH---HHH
T ss_pred EeCCCccC-------------CCCCEEEEcHHHHHHHHH----cCcchhhcCCEEEEechhhhcccch--hHHH---HHH
Confidence 66544321 246899999987643111 1122345689999999999998863 2333 333
Q ss_pred HhhCC-CCCEEEEeecCChhhHHHHHHhhc--cCCCeEeeccCCCCc-eEEEEEecc-----------c-----------
Q 004900 188 RNYLP-DVPILALTATAAPKVQKDVMESLC--LQNPLVLKSSFNRPN-LFYEVRYKD-----------L----------- 241 (724)
Q Consensus 188 ~~~~p-~~pil~LSAT~~~~v~~di~~~l~--l~~~~vi~~s~~r~n-i~~~v~~~~-----------~----------- 241 (724)
...++ ++++++||||+++.. ++..+++ ...+..+.....+|. +...+.... .
T Consensus 217 l~~l~~~~~il~LSATi~n~~--e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNAM--EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAM 294 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTHH--HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHH
T ss_pred HHhcCCCCeEEEEcCCCCCHH--HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHH
Confidence 34444 789999999987642 2334432 122332222222221 211111100 0
Q ss_pred -------------------------h-------hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc-----
Q 004900 242 -------------------------L-------DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS----- 284 (724)
Q Consensus 242 -------------------------~-------~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~----- 284 (724)
. ...+..+...+...+..++||||+++..|+.++..|...++.
T Consensus 295 ~~l~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~ 374 (1010)
T 2xgj_A 295 ASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEK 374 (1010)
T ss_dssp HTCC------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHH
T ss_pred HHHhhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHH
Confidence 0 122334555555556668999999999999999999775543
Q ss_pred ----------------------------------eeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceE
Q 004900 285 ----------------------------------CAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV 330 (724)
Q Consensus 285 ----------------------------------v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~V 330 (724)
+..|||+|++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 375 ~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vV 454 (1010)
T 2xgj_A 375 EALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 454 (1010)
T ss_dssp HHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEE
T ss_pred HHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEE
Confidence 6789999999999999999999999999999999999999999999
Q ss_pred Ee----eCC----CCCHHHHHHHHcccCCCCC--CCeEEEEEccc-cHHHHHHHHHhc
Q 004900 331 CH----FNI----PKSMEAFYQESGRAGRDQL--PSKSLLYYGMD-DRRRMEFILSKN 377 (724)
Q Consensus 331 I~----~d~----P~S~~~yiQr~GRAGRdG~--~g~~il~~~~~-D~~~~~~i~~~~ 377 (724)
|+ ||. |.|+..|+||+|||||.|. .|.|++++... +...+..++...
T Consensus 455 I~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~ 512 (1010)
T 2xgj_A 455 FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQ 512 (1010)
T ss_dssp ESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCC
T ss_pred EeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCC
Confidence 99 999 8999999999999999997 59999999865 666666666543
No 33
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.4e-38 Score=377.35 Aligned_cols=321 Identities=20% Similarity=0.183 Sum_probs=243.7
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC------CcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHH
Q 004900 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG------RDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALM 91 (724)
Q Consensus 21 ~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g------~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~ 91 (724)
....++.+.+...+|| +|+++|.++|+.++.+ +++++++|||+|||++|++|++. .+..++|++||++|+
T Consensus 352 ~~~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La 430 (780)
T 1gm5_A 352 KIEGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILA 430 (780)
T ss_dssp CCCTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHH
T ss_pred CCchHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHH
Confidence 3344666666677999 8999999999999875 59999999999999999999875 478999999999999
Q ss_pred HHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccc
Q 004900 92 ENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 167 (724)
Q Consensus 92 ~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEA 167 (724)
.|+++.+.++ |+++..++++.....+...+..+..+. .+|+++||+.+. .......+++|||||+
T Consensus 431 ~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~--~~IvVgT~~ll~---------~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 431 IQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQ--IDVVIGTHALIQ---------EDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp HHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSC--CCEEEECTTHHH---------HCCCCSCCCEEEEESC
T ss_pred HHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHh---------hhhhccCCceEEeccc
Confidence 9999998874 788999999988888877787777664 789999987552 2234566899999999
Q ss_pred cccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeec-cCCCCceEEEEEeccchhhHH
Q 004900 168 HCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLDDAY 246 (724)
Q Consensus 168 H~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~-s~~r~ni~~~v~~~~~~~~k~ 246 (724)
|++ |...|. .++....+.++++||||+.+...... ..+..+..++.. +..+..+...+.........+
T Consensus 500 Hr~---g~~qr~------~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~ 568 (780)
T 1gm5_A 500 HRF---GVKQRE------ALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVY 568 (780)
T ss_dssp CCC--------C------CCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHH
T ss_pred chh---hHHHHH------HHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccCCCCcceEEEEeccchHHHHH
Confidence 995 433322 12333357899999999998766522 233222223222 233444443333222222222
Q ss_pred HHHHHHHHhcCCceEEEEeccc--------ccHHHHHHHHHh---CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEc
Q 004900 247 ADLCSVLKANGDTCAIVYCLER--------TTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT 315 (724)
Q Consensus 247 ~~L~~lLk~~~~~~~IIf~~sr--------~~~e~La~~L~~---~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT 315 (724)
..+.+.+ ..+.+++|||+++ ..++.+++.|.. .++.+..+||+|++.+|..++++|.+|+++|||||
T Consensus 569 ~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT 646 (780)
T 1gm5_A 569 EFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVST 646 (780)
T ss_dssp HHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCS
T ss_pred HHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 2232222 2456799999966 457888999988 47889999999999999999999999999999999
Q ss_pred cccccccCCCCcceEEeeCCCC-CHHHHHHHHcccCCCCCCCeEEEEEcccc
Q 004900 316 VAFGMGIDRKDVRLVCHFNIPK-SMEAFYQESGRAGRDQLPSKSLLYYGMDD 366 (724)
Q Consensus 316 ~a~g~GIDip~V~~VI~~d~P~-S~~~yiQr~GRAGRdG~~g~~il~~~~~D 366 (724)
+++++|||+|++++||+++.|. +...|.|++||+||.|.+|.|++++.+.+
T Consensus 647 ~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~~~~ 698 (780)
T 1gm5_A 647 TVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVGDVG 698 (780)
T ss_dssp SCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCCSCC
T ss_pred CCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEECCCC
Confidence 9999999999999999999996 78999999999999999999999998433
No 34
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=2.5e-38 Score=388.06 Aligned_cols=324 Identities=16% Similarity=0.213 Sum_probs=241.5
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHHHHHHHHHH
Q 004900 24 EALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLK 99 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~~qqv~~l~ 99 (724)
+++.+.+.+.+||. | |+|.++|+.++.|+|++++||||+|||+ |++|++. .++.+|||+||++|+.|+.+.++
T Consensus 44 ~~~~~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~ 120 (1054)
T 1gku_B 44 KEFVEFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIR 120 (1054)
T ss_dssp HHHHHHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHH
Confidence 44667788889999 9 9999999999999999999999999998 8888875 46899999999999999999998
Q ss_pred Hc----CC----ceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 100 EK----GI----AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 100 ~~----gi----~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
.+ ++ .+..++++.....+......+.. .+|+++||+.+.. +... ...+++|||||||+++
T Consensus 121 ~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~----~~IlV~TP~~L~~------~l~~--L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN----FKIVITTTQFLSK------HYRE--LGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG----CSEEEEEHHHHHH------CSTT--SCCCSEEEESCHHHHH
T ss_pred HHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC----CCEEEEcHHHHHH------HHHH--hccCCEEEEeChhhhh
Confidence 74 45 66677777766665545554443 6788888875542 2111 4468999999999999
Q ss_pred cCCCCChHHHHHHHHHHh-----hCCCCCEEEEeecCChhhHH---HHHHhhccCCCeEeeccCCCCceEEEEEeccchh
Q 004900 172 SWGHDFRPSYRKLSSLRN-----YLPDVPILALTATAAPKVQK---DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243 (724)
Q Consensus 172 ~~G~dFrp~y~~L~~l~~-----~~p~~pil~LSAT~~~~v~~---di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~ 243 (724)
+||+++++.+..++.... ..+..+++++|||+++. .. .+..... ...+.......+++.+.+.. .
T Consensus 189 ~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~--~i~v~~~~~~~~~i~~~~~~----~ 261 (1054)
T 1gku_B 189 KASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLL--NFDIGSSRITVRNVEDVAVN----D 261 (1054)
T ss_dssp TSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHH--CCCCSCCEECCCCEEEEEES----C
T ss_pred hccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcce--EEEccCcccCcCCceEEEec----h
Confidence 999877776665532111 12367899999999986 21 1221111 11111122334455544442 2
Q ss_pred hHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEE----ccccc
Q 004900 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVA----TVAFG 319 (724)
Q Consensus 244 ~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVA----T~a~g 319 (724)
++...|.++++.. +.++||||++++.|+.++..|... +.+..+||++. .++++|++|+++|||| |++++
T Consensus 262 ~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~ 334 (1054)
T 1gku_B 262 ESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLV 334 (1054)
T ss_dssp CCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------
T ss_pred hHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeE
Confidence 3344566666654 467999999999999999999988 99999999983 7789999999999999 99999
Q ss_pred cccCCCCc-ceEEeeCCC--------------------------------------------------------------
Q 004900 320 MGIDRKDV-RLVCHFNIP-------------------------------------------------------------- 336 (724)
Q Consensus 320 ~GIDip~V-~~VI~~d~P-------------------------------------------------------------- 336 (724)
+|||+|+| ++|||+|+|
T Consensus 335 rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 414 (1054)
T 1gku_B 335 RGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDV 414 (1054)
T ss_dssp CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHHHHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSS
T ss_pred eccccCCcccEEEEeCCCcccccccccccChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccce
Confidence 99999996 999999999
Q ss_pred ---------CCHHHHHHHHcccCCCCCCC--eEEEEEccccHHHHHHHHHh
Q 004900 337 ---------KSMEAFYQESGRAGRDQLPS--KSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 337 ---------~S~~~yiQr~GRAGRdG~~g--~~il~~~~~D~~~~~~i~~~ 376 (724)
.+..+|+||+|||||.|..| .++.|+..+|...++.+.+.
T Consensus 415 ~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~ 465 (1054)
T 1gku_B 415 VVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIER 465 (1054)
T ss_dssp EEETTEEEEECHHHHHHHHHTTCCEETTEECCEEEEEECSCHHHHHHHHHH
T ss_pred eEeecceecCcHHHHhhhhchhhhccCCCCceEEEEEEecCHHHHHHHHHH
Confidence 79999999999999987775 47777777777776666554
No 35
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=7.6e-36 Score=368.42 Aligned_cols=322 Identities=20% Similarity=0.197 Sum_probs=252.3
Q ss_pred CCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CC--cEEEEcCCCchHHHHHHHHHH---cCCCeEEEEcCcH
Q 004900 18 KPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS----GR--DCFCLMPTGGGKSMCYQIPAL---AKPGIVLVVSPLI 88 (724)
Q Consensus 18 ~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~----g~--dvlv~apTGsGKTl~~~lpal---~~~~~vLVlsPl~ 88 (724)
..+.+...+...+...|||. ++|+|.++|+.++. |+ |+++++|||+|||++|+++++ ..+..++|++||+
T Consensus 584 ~~~~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~ 662 (1151)
T 2eyq_A 584 FAFKHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 662 (1151)
T ss_dssp CCCCCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred CCCCCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechH
Confidence 34666778888888889997 69999999999986 65 999999999999999988774 4678999999999
Q ss_pred HHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEE
Q 004900 89 ALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (724)
Q Consensus 89 aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVI 164 (724)
+|+.|+++.+..+ ++.+..+++..+.......+..+..+. .+|+++||+++.. ......+++|||
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~--~dIvV~T~~ll~~---------~~~~~~l~lvIi 731 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK--IDILIGTHKLLQS---------DVKFKDLGLLIV 731 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTC--CSEEEECTHHHHS---------CCCCSSEEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCC--CCEEEECHHHHhC---------CccccccceEEE
Confidence 9999999999863 567777877777777777777777664 7899999876532 223456899999
Q ss_pred ccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeec-cCCCCceEEEEEeccchh
Q 004900 165 DEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS-SFNRPNLFYEVRYKDLLD 243 (724)
Q Consensus 165 DEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~-s~~r~ni~~~v~~~~~~~ 243 (724)
||||++ |... +.. +....+++++++||||+.+....... .++.+..++.. +..+..+...+..... .
T Consensus 732 DEaH~~---g~~~---~~~---l~~l~~~~~vl~lSATp~p~~l~~~~--~~~~~~~~i~~~~~~r~~i~~~~~~~~~-~ 799 (1151)
T 2eyq_A 732 DEEHRF---GVRH---KER---IKAMRANVDILTLTATPIPRTLNMAM--SGMRDLSIIATPPARRLAVKTFVREYDS-M 799 (1151)
T ss_dssp ESGGGS---CHHH---HHH---HHHHHTTSEEEEEESSCCCHHHHHHH--TTTSEEEECCCCCCBCBCEEEEEEECCH-H
T ss_pred echHhc---ChHH---HHH---HHHhcCCCCEEEEcCCCChhhHHHHH--hcCCCceEEecCCCCccccEEEEecCCH-H
Confidence 999994 4221 222 33333578899999999988766433 34444433332 2334444444333321 2
Q ss_pred hHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhC--CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccc
Q 004900 244 DAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (724)
Q Consensus 244 ~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~--gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~G 321 (724)
.....+...+ ..+++++|||++++.++.+++.|++. ++.+..+||+|++.+|..++++|.+|+++|||||+++++|
T Consensus 800 ~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~G 877 (1151)
T 2eyq_A 800 VVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 877 (1151)
T ss_dssp HHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGG
T ss_pred HHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceee
Confidence 2233333322 24578999999999999999999987 8899999999999999999999999999999999999999
Q ss_pred cCCCCcceEEeeCC-CCCHHHHHHHHcccCCCCCCCeEEEEEccc
Q 004900 322 IDRKDVRLVCHFNI-PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (724)
Q Consensus 322 IDip~V~~VI~~d~-P~S~~~yiQr~GRAGRdG~~g~~il~~~~~ 365 (724)
||+|++++||+++. +.++..|+|++||+||.|+.|.|++++...
T Consensus 878 iDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~~~~ 922 (1151)
T 2eyq_A 878 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 922 (1151)
T ss_dssp SCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEECCG
T ss_pred ecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEECCc
Confidence 99999999999988 569999999999999999999999998764
No 36
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=5.4e-36 Score=350.37 Aligned_cols=322 Identities=18% Similarity=0.184 Sum_probs=236.2
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH----c
Q 004900 29 LLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE----K 101 (724)
Q Consensus 29 ~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~----~ 101 (724)
+.++.+|+ .++|+|..+++.++.|+ |+.|+||+|||++|.+|++. .+..++||+||++|+.|..+.+.. +
T Consensus 75 a~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~l 151 (844)
T 1tf5_A 75 ASRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFL 151 (844)
T ss_dssp HHHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 34456899 89999999999999998 99999999999999999983 567899999999999988777655 5
Q ss_pred CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH---HhhhhcCCccEEEEccccccc-cCCCC-
Q 004900 102 GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGHD- 176 (724)
Q Consensus 102 gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L---~~~~~~~~l~lIVIDEAH~l~-~~G~d- 176 (724)
|+.+.++.++.....+...+ ..+|+|+||..+.-......+ .....+..+.++||||||.|+ +.+..
T Consensus 152 gl~v~~i~gg~~~~~r~~~~--------~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tp 223 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEKREAY--------AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTP 223 (844)
T ss_dssp TCCEEECCTTSCHHHHHHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCE
T ss_pred CCeEEEEeCCCCHHHHHHhc--------CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccc
Confidence 88988888887765544332 267888888766422222221 112345678999999999987 54411
Q ss_pred ---------ChHHHHHHHHHHhhCC----------CCCEE-----------------EEeecCCh---hhH---------
Q 004900 177 ---------FRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQ--------- 208 (724)
Q Consensus 177 ---------Frp~y~~L~~l~~~~p----------~~pil-----------------~LSAT~~~---~v~--------- 208 (724)
-...|..+..+...++ ..+++ ++|||.+. .+.
T Consensus 224 lIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~ 303 (844)
T 1tf5_A 224 LIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAM 303 (844)
T ss_dssp EEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTC
T ss_pred hhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHh
Confidence 0124555666665554 34444 56666442 111
Q ss_pred ------------------------------------------------------------------------------HH
Q 004900 209 ------------------------------------------------------------------------------KD 210 (724)
Q Consensus 209 ------------------------------------------------------------------------------~d 210 (724)
..
T Consensus 304 ~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e 383 (844)
T 1tf5_A 304 QKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEE 383 (844)
T ss_dssp CBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHH
T ss_pred hcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHH
Confidence 11
Q ss_pred HHHhhccCCCeEeeccCCCCceEEE---EEeccchhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCCce
Q 004900 211 VMESLCLQNPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISC 285 (724)
Q Consensus 211 i~~~l~l~~~~vi~~s~~r~ni~~~---v~~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi~v 285 (724)
+.+..++ .++..+.++|.+... +.+. ...+++..|.+.+.. ..+.++||||+|++.++.|+..|...|+++
T Consensus 384 ~~~iY~l---~vv~IPtn~p~~r~d~~d~v~~-~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~ 459 (844)
T 1tf5_A 384 FRNIYNM---QVVTIPTNRPVVRDDRPDLIYR-TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPH 459 (844)
T ss_dssp HHHHHCC---CEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCC
T ss_pred HHHHhCC---ceEEecCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCE
Confidence 1111111 011223344444321 1222 235677888777754 245689999999999999999999999999
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCC--------CcceEEeeCCCCCHHHHHHHHcccCCCCCCCe
Q 004900 286 AAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSK 357 (724)
Q Consensus 286 ~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip--------~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~ 357 (724)
..+||++.+.+|..+.+.|+.| .|+|||+++|||+|++ ++.+||+|++|.|.+.|.||+||+||.|.+|.
T Consensus 460 ~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~ 537 (844)
T 1tf5_A 460 QVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGI 537 (844)
T ss_dssp EEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEE
T ss_pred EEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCe
Confidence 9999999888887776666665 6999999999999999 78899999999999999999999999999999
Q ss_pred EEEEEccccH
Q 004900 358 SLLYYGMDDR 367 (724)
Q Consensus 358 ~il~~~~~D~ 367 (724)
+++|++.+|.
T Consensus 538 s~~~vs~eD~ 547 (844)
T 1tf5_A 538 TQFYLSMEDE 547 (844)
T ss_dssp EEEEEETTSS
T ss_pred EEEEecHHHH
Confidence 9999997773
No 37
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=8.1e-37 Score=347.28 Aligned_cols=300 Identities=13% Similarity=0.086 Sum_probs=220.5
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHHHHHHHHHHHcCC----ceeeec
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGI----AGEFLS 109 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~~qqv~~l~~~gi----~~~~l~ 109 (724)
+|+|+|.++++.++.++++++++|||+|||++|++++.. ..+.+|||+|+++|+.|+.+.+.+++. .+..++
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~ 192 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECG
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEe
Confidence 799999999999999999999999999999999988865 345999999999999999999998743 344455
Q ss_pred ccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHh
Q 004900 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (724)
Q Consensus 110 s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~ 189 (724)
++...... .....+|+++||+.+..... .....+++|||||||++.. ..+..+..
T Consensus 193 ~~~~~~~~---------~~~~~~I~i~T~~~l~~~~~-------~~~~~~~liIiDE~H~~~~---------~~~~~il~ 247 (510)
T 2oca_A 193 GGASKDDK---------YKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (510)
T ss_dssp GGCCTTGG---------GCTTCSEEEEEHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHGG
T ss_pred cCCccccc---------cccCCcEEEEeHHHHhhchh-------hhhhcCCEEEEECCcCCCc---------ccHHHHHH
Confidence 44333221 11347899999997665421 1223489999999999875 23444555
Q ss_pred hC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCC--------CCceEEEEEec-----------cchh------
Q 004900 190 YL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFN--------RPNLFYEVRYK-----------DLLD------ 243 (724)
Q Consensus 190 ~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~--------r~ni~~~v~~~-----------~~~~------ 243 (724)
.+ +..++++||||++..... +....++..+.++..+.. .+.....+... ....
T Consensus 248 ~~~~~~~~l~lSATp~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (510)
T 2oca_A 248 GLNNCMFKFGLSGSLRDGKAN-IMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKII 326 (510)
T ss_dssp GCTTCCEEEEEESCGGGCSSC-HHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHH
T ss_pred hcccCcEEEEEEeCCCCCccc-HHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHH
Confidence 55 567899999999655322 222222333333222211 11111111100 0001
Q ss_pred ----hHHHHHHHHHHhc---CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEc-
Q 004900 244 ----DAYADLCSVLKAN---GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT- 315 (724)
Q Consensus 244 ----~k~~~L~~lLk~~---~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT- 315 (724)
.+...+.+++... ++.++||||+ ++.++.+++.|.+.+..+..+||+|+..+|..+++.|.+|+.+|||||
T Consensus 327 ~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 327 TGLSKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp HTCHHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred hccHHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 1222344444433 4566677777 889999999999998899999999999999999999999999999999
Q ss_pred cccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 316 VAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 316 ~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
+++++|||+|++++||++++|.++..|+|++||+||.|+.+.++++|+.
T Consensus 406 ~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~ 454 (510)
T 2oca_A 406 GVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDL 454 (510)
T ss_dssp HHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEE
T ss_pred ChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEe
Confidence 9999999999999999999999999999999999999998866666663
No 38
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.9e-36 Score=341.06 Aligned_cols=288 Identities=18% Similarity=0.177 Sum_probs=217.9
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCc-eeeecccchHHH
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~-~~~l~s~~~~~~ 116 (724)
.|+|+|.++++.++.++++++.+|||+|||++|+.++...+..+|||+|+++|+.||.+.+..+++. +..++++...
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~-- 170 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE-- 170 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC--
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC--
Confidence 5899999999999999999999999999999999999888899999999999999999999999988 7777665431
Q ss_pred HHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCE
Q 004900 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (724)
Q Consensus 117 ~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pi 196 (724)
..+|+++||+.+.... ... ...+++|||||||++...+ |+ . +...++..++
T Consensus 171 -------------~~~Ivv~T~~~l~~~~-----~~~--~~~~~liIvDEaH~~~~~~--~~----~---~~~~~~~~~~ 221 (472)
T 2fwr_A 171 -------------LKPLTVSTYDSAYVNA-----EKL--GNRFMLLIFDEVHHLPAES--YV----Q---IAQMSIAPFR 221 (472)
T ss_dssp -------------CCSEEEEEHHHHHHTH-----HHH--TTTCSEEEEETGGGTTSTT--TH----H---HHHTCCCSEE
T ss_pred -------------cCCEEEEEcHHHHHHH-----HHh--cCCCCEEEEECCcCCCChH--HH----H---HHHhcCCCeE
Confidence 2578888887654321 111 1348999999999998754 32 2 4556678889
Q ss_pred EEEeecCChhhHH--HHHHhhc---------------cCCCeEeeccCC---------------------CCceE-----
Q 004900 197 LALTATAAPKVQK--DVMESLC---------------LQNPLVLKSSFN---------------------RPNLF----- 233 (724)
Q Consensus 197 l~LSAT~~~~v~~--di~~~l~---------------l~~~~vi~~s~~---------------------r~ni~----- 233 (724)
++||||+...... .+...++ +..+........ ..++.
T Consensus 222 l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 222 LGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAE 301 (472)
T ss_dssp EEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCS
T ss_pred EEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchh
Confidence 9999999742100 0111110 111111000000 00000
Q ss_pred -EE-E-E----e----------------ccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecC
Q 004900 234 -YE-V-R----Y----------------KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHA 290 (724)
Q Consensus 234 -~~-v-~----~----------------~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~ 290 (724)
+. . . . ......+...|.+++....+.++||||++++.++.++..|. +..+||
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~~g 376 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-----IPAITH 376 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT-----CCBCCS
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC-----cceeeC
Confidence 00 0 0 0 00112456777888888778899999999999999999883 678999
Q ss_pred CCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCC-CeEEEE
Q 004900 291 GLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP-SKSLLY 361 (724)
Q Consensus 291 ~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~-g~~il~ 361 (724)
+++..+|..++++|++|+++|||||+++++|+|+|++++||++++|+|+..|+|++||+||.|+. +.+++|
T Consensus 377 ~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~ 448 (472)
T 2fwr_A 377 RTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLY 448 (472)
T ss_dssp SSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999965 455554
No 39
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.2e-34 Score=367.54 Aligned_cols=328 Identities=19% Similarity=0.226 Sum_probs=239.3
Q ss_pred CCCCCCHHHHHHHHHHHcC-CcEEEEcCCCchHHHHHHHHHHc-----CCCeEEEEcCcHHHHHHHHHHHHH-----cCC
Q 004900 35 GHAQFRDKQLDAIQAVLSG-RDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKE-----KGI 103 (724)
Q Consensus 35 G~~~lr~~Q~eaI~ail~g-~dvlv~apTGsGKTl~~~lpal~-----~~~~vLVlsPl~aL~~qqv~~l~~-----~gi 103 (724)
+|..|+|+|.++++.++.+ +++++.||||+|||++|.+|++. .++++|+|+|+++|+.|.++.+++ .|+
T Consensus 923 ~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~ 1002 (1724)
T 4f92_B 923 KFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNK 1002 (1724)
T ss_dssp TCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCC
T ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCC
Confidence 7899999999999999865 68999999999999999999864 367899999999999999998865 356
Q ss_pred ceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHH
Q 004900 104 AGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRK 183 (724)
Q Consensus 104 ~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~ 183 (724)
.+..+.+......+. .. ..+|+++|||.+.. .+...........+++|||||+|++.+. ..+.+..
T Consensus 1003 ~V~~ltGd~~~~~~~--~~-------~~~IiV~TPEkld~--llr~~~~~~~l~~v~lvViDE~H~l~d~---rg~~le~ 1068 (1724)
T 4f92_B 1003 KVVLLTGETSTDLKL--LG-------KGNIIISTPEKWDI--LSRRWKQRKNVQNINLFVVDEVHLIGGE---NGPVLEV 1068 (1724)
T ss_dssp CEEECCSCHHHHHHH--HH-------HCSEEEECHHHHHH--HHTTTTTCHHHHSCSEEEECCGGGGGST---THHHHHH
T ss_pred EEEEEECCCCcchhh--cC-------CCCEEEECHHHHHH--HHhCcccccccceeeEEEeechhhcCCC---CCccHHH
Confidence 677666655433221 11 26799999997531 1111111112235899999999999763 3444433
Q ss_pred H-HHH---HhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEee-ccCCCCc-eEEEEEecc--chhhHH----HHHH
Q 004900 184 L-SSL---RNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK-SSFNRPN-LFYEVRYKD--LLDDAY----ADLC 250 (724)
Q Consensus 184 L-~~l---~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~-~s~~r~n-i~~~v~~~~--~~~~k~----~~L~ 250 (724)
+ ..+ .... +++++|+||||.++. .++.++++......+. .+..||. +...+.... ...... ..+.
T Consensus 1069 il~rl~~i~~~~~~~~riI~lSATl~N~--~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~ 1146 (1724)
T 4f92_B 1069 ICSRMRYISSQIERPIRIVALSSSLSNA--KDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVY 1146 (1724)
T ss_dssp HHHHHHHHHHTTSSCCEEEEEESCBTTH--HHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHH
T ss_pred HHHHHHHHHhhcCCCceEEEEeCCCCCH--HHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHH
Confidence 2 222 2233 478999999999864 6788999876554433 2334553 222222111 111111 1222
Q ss_pred HHH-HhcCCceEEEEecccccHHHHHHHHHhC----------------------------------CCceeeecCCCCHH
Q 004900 251 SVL-KANGDTCAIVYCLERTTCDELSAYLSAG----------------------------------GISCAAYHAGLNDK 295 (724)
Q Consensus 251 ~lL-k~~~~~~~IIf~~sr~~~e~La~~L~~~----------------------------------gi~v~~~H~~l~~~ 295 (724)
..+ +...+.++||||+|++.|+.+|..|... ...+..|||||++.
T Consensus 1147 ~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~ 1226 (1724)
T 4f92_B 1147 HAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPM 1226 (1724)
T ss_dssp HHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHH
T ss_pred HHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHH
Confidence 223 2345678999999999999988776421 12468899999999
Q ss_pred HHHHHHHHhhcCCceEEEEccccccccCCCCcceEE----------eeCCCCCHHHHHHHHcccCCCCC--CCeEEEEEc
Q 004900 296 ARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----------HFNIPKSMEAFYQESGRAGRDQL--PSKSLLYYG 363 (724)
Q Consensus 296 eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI----------~~d~P~S~~~yiQr~GRAGRdG~--~g~~il~~~ 363 (724)
+|..+.+.|.+|.++|||||+.+++|||+|.+++|| |...|.++.+|+|++|||||.|. .|.|++++.
T Consensus 1227 ~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~ 1306 (1724)
T 4f92_B 1227 ERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQ 1306 (1724)
T ss_dssp HHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEE
T ss_pred HHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEec
Confidence 999999999999999999999999999999999999 34457899999999999999997 789999999
Q ss_pred cccHHHHHHHHHhcc
Q 004900 364 MDDRRRMEFILSKNQ 378 (724)
Q Consensus 364 ~~D~~~~~~i~~~~~ 378 (724)
..+...++.++....
T Consensus 1307 ~~~~~~~~~ll~~~~ 1321 (1724)
T 4f92_B 1307 GSKKDFFKKFLYEPL 1321 (1724)
T ss_dssp GGGHHHHHHHTTSCB
T ss_pred chHHHHHHHHhCCCC
Confidence 999888888876543
No 40
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=3.5e-36 Score=338.18 Aligned_cols=284 Identities=13% Similarity=0.091 Sum_probs=204.8
Q ss_pred CCCCCCHHHHHHHHHHHcCCcE-EEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeec
Q 004900 35 GHAQFRDKQLDAIQAVLSGRDC-FCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLS 109 (724)
Q Consensus 35 G~~~lr~~Q~eaI~ail~g~dv-lv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~ 109 (724)
|+.+++|.|+ +|+.+++++++ ++.+|||+|||++|++|++. .+..+||++||++|+.|+.+.+... ......
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~--~v~~~~ 77 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL--PIRYQT 77 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS--CEEECC
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc--eeeeee
Confidence 7888999985 79999999887 88999999999999999864 4679999999999999999888633 222211
Q ss_pred ccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHh
Q 004900 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (724)
Q Consensus 110 s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~ 189 (724)
..... ...+...+.++|+..+ ...+........+++|||||||++ +++ +......+ ..+.
T Consensus 78 ~~~~~-----------~~~~~~~i~~~t~~~l-----~~~l~~~~~l~~~~~iViDEah~~-~~~--~~~~~~~~-~~~~ 137 (451)
T 2jlq_A 78 PAVKS-----------DHTGREIVDLMCHATF-----TTRLLSSTRVPNYNLIVMDEAHFT-DPC--SVAARGYI-STRV 137 (451)
T ss_dssp TTCSC-----------CCCSSCCEEEEEHHHH-----HHHHHHCSCCCCCSEEEEETTTCC-SHH--HHHHHHHH-HHHH
T ss_pred ccccc-----------cCCCCceEEEEChHHH-----HHHhhCcccccCCCEEEEeCCccC-Ccc--hHHHHHHH-HHhh
Confidence 11100 1112344555555443 223334444567999999999987 222 22222112 2233
Q ss_pred hCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccc
Q 004900 190 YLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERT 269 (724)
Q Consensus 190 ~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~ 269 (724)
..++.++++||||+++.+.. +...++.++......|...+ ..+..++... .+++||||++++
T Consensus 138 ~~~~~~~i~~SAT~~~~~~~-----~~~~~~~~~~~~~~~p~~~~------------~~~~~~l~~~-~~~~lVF~~s~~ 199 (451)
T 2jlq_A 138 EMGEAAAIFMTATPPGSTDP-----FPQSNSPIEDIEREIPERSW------------NTGFDWITDY-QGKTVWFVPSIK 199 (451)
T ss_dssp HTTSCEEEEECSSCTTCCCS-----SCCCSSCEEEEECCCCSSCC------------SSSCHHHHHC-CSCEEEECSSHH
T ss_pred cCCCceEEEEccCCCccchh-----hhcCCCceEecCccCCchhh------------HHHHHHHHhC-CCCEEEEcCCHH
Confidence 45689999999999876433 11122222222111111111 1122334443 458999999999
Q ss_pred cHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeC---------------
Q 004900 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFN--------------- 334 (724)
Q Consensus 270 ~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d--------------- 334 (724)
.++.++..|...|+.+..+|+++. ..+++.|.+|+.+|||||+++++|||+|+ ++|||||
T Consensus 200 ~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l 274 (451)
T 2jlq_A 200 AGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERV 274 (451)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEE
T ss_pred HHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccccccccee
Confidence 999999999999999999999764 56899999999999999999999999999 9999999
Q ss_pred -----CCCCHHHHHHHHcccCCCCC-CCeEEEEEcc
Q 004900 335 -----IPKSMEAFYQESGRAGRDQL-PSKSLLYYGM 364 (724)
Q Consensus 335 -----~P~S~~~yiQr~GRAGRdG~-~g~~il~~~~ 364 (724)
.|.|..+|+||+|||||.|. +|.|++|+..
T Consensus 275 ~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 275 ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred eecccccCCHHHHHHhccccCCCCCCCccEEEEeCC
Confidence 99999999999999999998 8899888753
No 41
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.8e-34 Score=366.13 Aligned_cols=338 Identities=20% Similarity=0.222 Sum_probs=240.5
Q ss_pred hHHHHHHHHHHc-CCCCCCHHHHHHHHHHHc-CCcEEEEcCCCchHHHHHHHHHHc--------------CCCeEEEEcC
Q 004900 23 KEALVKLLRWHF-GHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA--------------KPGIVLVVSP 86 (724)
Q Consensus 23 ~~~l~~~L~~~f-G~~~lr~~Q~eaI~ail~-g~dvlv~apTGsGKTl~~~lpal~--------------~~~~vLVlsP 86 (724)
..++....+..| ||.+|+++|.++++.++. +++++++||||+|||++|.++++. .+.++|+|+|
T Consensus 63 i~~Lp~~~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP 142 (1724)
T 4f92_B 63 VEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAP 142 (1724)
T ss_dssp TTTSCGGGSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECS
T ss_pred hHhcCHHHHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECC
Confidence 344444556667 799999999999999885 689999999999999999999873 2468999999
Q ss_pred cHHHHHHHHHHHHH----cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEE
Q 004900 87 LIALMENQVIGLKE----KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (724)
Q Consensus 87 l~aL~~qqv~~l~~----~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lI 162 (724)
+++|+.|+++.|.+ .|+.+..+.++...... . ....+|+++|||.+..- +...........+++|
T Consensus 143 ~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~-----~----~~~~~IlVtTpEkld~l--lr~~~~~~~l~~v~~v 211 (1724)
T 4f92_B 143 MRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE-----E----ISATQIIVCTPEKWDII--TRKGGERTYTQLVRLI 211 (1724)
T ss_dssp SHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT-----T----GGGCSEEEECHHHHHHH--TTSSTTHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc-----c----cCCCCEEEECHHHHHHH--HcCCccchhhcCcCEE
Confidence 99999999998876 47788777766543211 0 12378999999964210 0000001113458999
Q ss_pred EEccccccccCCCCChHHHHH--HHHH----HhhCCCCCEEEEeecCChhhHHHHHHhhccCCC--eEeeccCCCCc-eE
Q 004900 163 AIDEAHCISSWGHDFRPSYRK--LSSL----RNYLPDVPILALTATAAPKVQKDVMESLCLQNP--LVLKSSFNRPN-LF 233 (724)
Q Consensus 163 VIDEAH~l~~~G~dFrp~y~~--L~~l----~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~--~vi~~s~~r~n-i~ 233 (724)
||||+|.+.+ .|..... +.++ ....+++++|+||||.++. .++.++|+...+ ..+..+..||. +.
T Consensus 212 IiDEvH~l~d----~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~--~dvA~wL~~~~~~~~~~~~~~~RPvpL~ 285 (1724)
T 4f92_B 212 ILDEIHLLHD----DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY--EDVATFLRVDPAKGLFYFDNSFRPVPLE 285 (1724)
T ss_dssp EETTGGGGGS----TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH--HHHHHHTTCCHHHHEEECCGGGCSSCEE
T ss_pred EEecchhcCC----ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH--HHHHHHhCCCCCCCeEEECCCCccCccE
Confidence 9999998864 2533222 2222 2234688999999999863 567788764322 22223333543 22
Q ss_pred EEEEe-c-cchhhHHHHHHH----HHHh-cCCceEEEEecccccHHHHHHHHHhC-------------------------
Q 004900 234 YEVRY-K-DLLDDAYADLCS----VLKA-NGDTCAIVYCLERTTCDELSAYLSAG------------------------- 281 (724)
Q Consensus 234 ~~v~~-~-~~~~~k~~~L~~----lLk~-~~~~~~IIf~~sr~~~e~La~~L~~~------------------------- 281 (724)
..+.. . .........+.. .+.. ..+.++||||+||+.|+.+|..|.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (1724)
T 4f92_B 286 QTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEA 365 (1724)
T ss_dssp EECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTT
T ss_pred EEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhh
Confidence 22111 1 111122222222 2222 34568999999999999999888531
Q ss_pred ------------CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEe----eC------CCCCH
Q 004900 282 ------------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH----FN------IPKSM 339 (724)
Q Consensus 282 ------------gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~----~d------~P~S~ 339 (724)
...+.++||||+.++|..+.+.|++|.++|||||+++++|||+|.+++||+ |+ .|-++
T Consensus 366 ~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~ 445 (1724)
T 4f92_B 366 EQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGA 445 (1724)
T ss_dssp SCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCH
T ss_pred cccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCH
Confidence 123678999999999999999999999999999999999999999999995 44 35689
Q ss_pred HHHHHHHcccCCCCC--CCeEEEEEccccHHHHHHHHHhc
Q 004900 340 EAFYQESGRAGRDQL--PSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 340 ~~yiQr~GRAGRdG~--~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
.+|.|++|||||.|. .|.++++...++......++...
T Consensus 446 ~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~ 485 (1724)
T 4f92_B 446 LDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQ 485 (1724)
T ss_dssp HHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTC
T ss_pred HHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCC
Confidence 999999999999875 68899999998887777777654
No 42
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=8.3e-36 Score=334.10 Aligned_cols=277 Identities=13% Similarity=0.114 Sum_probs=188.4
Q ss_pred HHHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhh
Q 004900 49 AVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDL 124 (724)
Q Consensus 49 ail~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l 124 (724)
++++|+|+++++|||+|||++|++|++. .+..+||++||++|+.|+.+.++.+++. ....
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~v~--~~~~-------------- 67 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVK--FHTQ-------------- 67 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSCEE--EESS--------------
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCCeE--Eecc--------------
Confidence 3567899999999999999999998874 4668999999999999999998865432 1100
Q ss_pred hcCCCCccEEEeCcccccC---hh-HHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEe
Q 004900 125 DSGKPSLRLLYVTPELTAT---PG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALT 200 (724)
Q Consensus 125 ~~~~~~~~il~~TPE~i~T---~~-~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LS 200 (724)
.+. .++||..+.. .+ +...+........+++|||||||++ + .+|...+..+..+.. .++.++++||
T Consensus 68 -----~~~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~--~~~~~~~~~~~~~~~-~~~~~~l~~S 137 (440)
T 1yks_A 68 -----AFS-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-D--PASIAARGWAAHRAR-ANESATILMT 137 (440)
T ss_dssp -----CCC-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-S--HHHHHHHHHHHHHHH-TTSCEEEEEC
T ss_pred -----cce-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-C--cchHHHHHHHHHHhc-cCCceEEEEe
Confidence 010 2556654321 12 2222222333567999999999998 2 223333333333332 3578999999
Q ss_pred ecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHh
Q 004900 201 ATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA 280 (724)
Q Consensus 201 AT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~ 280 (724)
||+++.+.. ......+... ....... .....+...+... +.++||||++++.++.+++.|+.
T Consensus 138 AT~~~~~~~----~~~~~~~~~~----------~~~~~~~---~~~~~~~~~l~~~-~~~~lVF~~s~~~a~~l~~~L~~ 199 (440)
T 1yks_A 138 ATPPGTSDE----FPHSNGEIED----------VQTDIPS---EPWNTGHDWILAD-KRPTAWFLPSIRAANVMAASLRK 199 (440)
T ss_dssp SSCTTCCCS----SCCCSSCEEE----------EECCCCS---SCCSSSCHHHHHC-CSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCCchhhh----hhhcCCCeeE----------eeeccCh---HHHHHHHHHHHhc-CCCEEEEeCCHHHHHHHHHHHHH
Confidence 999887532 1111111110 0000000 0011122233333 46899999999999999999999
Q ss_pred CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEe-------------------eCCCCCHHH
Q 004900 281 GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH-------------------FNIPKSMEA 341 (724)
Q Consensus 281 ~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~-------------------~d~P~S~~~ 341 (724)
.|+.+..+|| ++|..+++.|.+|+++|||||+++++|||+| +++||| ++.|.++.+
T Consensus 200 ~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~ 274 (440)
T 1yks_A 200 AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASS 274 (440)
T ss_dssp TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHH
T ss_pred cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHH
Confidence 9999999999 4688899999999999999999999999999 999997 899999999
Q ss_pred HHHHHcccCCC-CCCCeEEEEE---ccccHHHHHHHH
Q 004900 342 FYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEFIL 374 (724)
Q Consensus 342 yiQr~GRAGRd-G~~g~~il~~---~~~D~~~~~~i~ 374 (724)
|+||+||+||. |.+|.|++|+ ++.|...++.+.
T Consensus 275 ~~Qr~GR~GR~g~~~g~~~~l~~~~~~~~~~~l~~l~ 311 (440)
T 1yks_A 275 AAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLE 311 (440)
T ss_dssp HHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHH
T ss_pred HHHhccccCCCCCCCceEEEEeccCChhhhhhhhhhh
Confidence 99999999998 6899999997 566655555443
No 43
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=6.2e-36 Score=350.29 Aligned_cols=286 Identities=13% Similarity=0.083 Sum_probs=200.9
Q ss_pred CCCHHHH-----HHHHHHH------cCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHHHHHHHHHHHcC
Q 004900 38 QFRDKQL-----DAIQAVL------SGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKG 102 (724)
Q Consensus 38 ~lr~~Q~-----eaI~ail------~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~~qqv~~l~~~g 102 (724)
.++++|. ++|+.++ +|+|+++++|||+|||++|++|++. .+..+||++||++|+.|+.+.+..++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 7889999 9999888 8999999999999999999998874 46789999999999999999988765
Q ss_pred CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCccccc---Chh-HHHHHHhhhhcCCccEEEEccccccccCCCCCh
Q 004900 103 IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTA---TPG-FMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (724)
Q Consensus 103 i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~---T~~-~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFr 178 (724)
+.. .... +. .+.||..+. +.+ +...+........+++|||||||++. ..+.
T Consensus 295 i~~--~~~~-------------------l~-~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~---~~~~ 349 (673)
T 2wv9_A 295 VRY--LTPA-------------------VQ-REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD---PASI 349 (673)
T ss_dssp CEE--CCC-----------------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC---HHHH
T ss_pred eee--eccc-------------------cc-ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC---ccHH
Confidence 431 1000 00 034454332 222 22223332345679999999999982 1122
Q ss_pred HHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCC
Q 004900 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGD 258 (724)
Q Consensus 179 p~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~ 258 (724)
..+..+..+.. .++.++++||||+++.+.. ......+.. .+..... ......+...+.. .+
T Consensus 350 ~~~~~l~~~~~-~~~~~vl~~SAT~~~~i~~----~~~~~~~i~----------~v~~~~~---~~~~~~~l~~l~~-~~ 410 (673)
T 2wv9_A 350 AARGYIATRVE-AGEAAAIFMTATPPGTSDP----FPDTNSPVH----------DVSSEIP---DRAWSSGFEWITD-YA 410 (673)
T ss_dssp HHHHHHHHHHH-TTSCEEEEECSSCTTCCCS----SCCCSSCEE----------EEECCCC---SSCCSSCCHHHHS-CC
T ss_pred HHHHHHHHhcc-ccCCcEEEEcCCCChhhhh----hcccCCceE----------EEeeecC---HHHHHHHHHHHHh-CC
Confidence 22222322221 2578999999999876432 000011111 1100000 0011112223333 35
Q ss_pred ceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEe------
Q 004900 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH------ 332 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~------ 332 (724)
.++||||++++.++.++..|...|+.+..+||+ +|..+++.|.+|+++|||||+++++|||+| +++|||
T Consensus 411 ~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~ 485 (673)
T 2wv9_A 411 GKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVK 485 (673)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECC
T ss_pred CCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccc
Confidence 689999999999999999999999999999993 789999999999999999999999999999 999998
Q ss_pred --------------eCCCCCHHHHHHHHcccCCC-CCCCeEEEEE---ccccHHHHHH
Q 004900 333 --------------FNIPKSMEAFYQESGRAGRD-QLPSKSLLYY---GMDDRRRMEF 372 (724)
Q Consensus 333 --------------~d~P~S~~~yiQr~GRAGRd-G~~g~~il~~---~~~D~~~~~~ 372 (724)
|++|.+.++|+||+||+||. |+.|.|++|+ ++.|...++.
T Consensus 486 p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~ 543 (673)
T 2wv9_A 486 PTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHW 543 (673)
T ss_dssp EEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHH
T ss_pred ceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHH
Confidence 67999999999999999999 7899999996 4555444433
No 44
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.1e-35 Score=340.07 Aligned_cols=308 Identities=13% Similarity=0.090 Sum_probs=210.3
Q ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHHHHHH
Q 004900 20 LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQV 95 (724)
Q Consensus 20 ~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~~qqv 95 (724)
+...+.+.++|.+ ....+.|.|..+++.+++|+|+++.||||+|||++|++|++. .+.++|||+||++|+.|+.
T Consensus 155 l~~~~~~~~~l~~--~~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~ 232 (618)
T 2whx_A 155 VTKSGDYVSAITQ--AERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEME 232 (618)
T ss_dssp -------CEECBC--CCCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred ccchHHHHHHHhh--ccccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHH
Confidence 3344444444443 136677887778999999999999999999999999999874 4679999999999999999
Q ss_pred HHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhH-HHHHHhhhhcCCccEEEEccccccccCC
Q 004900 96 IGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGF-MSKLKKIHSRGLLNLVAIDEAHCISSWG 174 (724)
Q Consensus 96 ~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~-l~~L~~~~~~~~l~lIVIDEAH~l~~~G 174 (724)
+.+....+ .. ..... . ....+...+.++ +.+. ...+........+++|||||||++ +.+
T Consensus 233 ~~l~~~~v--~~-~~~~l--------~--~~~tp~~~i~~~------t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~ 292 (618)
T 2whx_A 233 EALRGLPI--RY-QTPAV--------K--SDHTGREIVDLM------CHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPC 292 (618)
T ss_dssp HHTTTSCE--EE-CCTTS--------S--CCCCSSSCEEEE------EHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHH
T ss_pred HHhcCCce--eE-ecccc--------e--eccCCCceEEEE------ChHHHHHHHhccccccCCeEEEEECCCCC-Ccc
Confidence 88864322 21 11000 0 011111222222 3322 222333334577999999999998 322
Q ss_pred CCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHH
Q 004900 175 HDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLK 254 (724)
Q Consensus 175 ~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk 254 (724)
|...+..+..... .++.++++||||++..+.. ... .++..+......+. ..+..+..++.
T Consensus 293 --~~~~~~~i~~~l~-~~~~q~il~SAT~~~~~~~----~~~-~~~~~~~v~~~~~~------------~~~~~ll~~l~ 352 (618)
T 2whx_A 293 --SVAARGYISTRVE-MGEAAAIFMTATPPGSTDP----FPQ-SNSPIEDIEREIPE------------RSWNTGFDWIT 352 (618)
T ss_dssp --HHHHHHHHHHHHH-HTSCEEEEECSSCTTCCCS----SCC-CSSCEEEEECCCCS------------SCCSSSCHHHH
T ss_pred --HHHHHHHHHHHhc-ccCccEEEEECCCchhhhh----hhc-cCCceeeecccCCH------------HHHHHHHHHHH
Confidence 4444444433321 1578999999999877432 111 12222221111110 01112223333
Q ss_pred hcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceE----
Q 004900 255 ANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLV---- 330 (724)
Q Consensus 255 ~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~V---- 330 (724)
.. ..++||||+|++.|+.+++.|...|+.+..+||+ +|..+++.|.+|+.+|||||+++++|||+| |++|
T Consensus 353 ~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 353 DY-QGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp HC-CSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred hC-CCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 33 4689999999999999999999999999999984 688899999999999999999999999997 9888
Q ss_pred ----------------EeeCCCCCHHHHHHHHcccCCCCC-CCeEEEEEc---cccHHHHHHHHH
Q 004900 331 ----------------CHFNIPKSMEAFYQESGRAGRDQL-PSKSLLYYG---MDDRRRMEFILS 375 (724)
Q Consensus 331 ----------------I~~d~P~S~~~yiQr~GRAGRdG~-~g~~il~~~---~~D~~~~~~i~~ 375 (724)
|+|++|.+.++|+||+|||||.|. .|.|++|+. +.|...++.+..
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~ 491 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEA 491 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHH
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHh
Confidence 788889999999999999999975 899999997 666655555443
No 45
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=3.3e-33 Score=326.08 Aligned_cols=326 Identities=18% Similarity=0.147 Sum_probs=219.4
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH----
Q 004900 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (724)
Q Consensus 28 ~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~---- 100 (724)
.+.++.+|. .++|+|..+++.++.|+ ++.|+||+|||++|.+|++. .+..++||+||++|+.|..+.+..
T Consensus 65 ea~~R~lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~ 141 (853)
T 2fsf_A 65 EASKRVFGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEF 141 (853)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 455666787 68999999999999998 99999999999999999974 467899999999999988877665
Q ss_pred cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH---HhhhhcCCccEEEEccccccc-cCCCC
Q 004900 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGHD 176 (724)
Q Consensus 101 ~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L---~~~~~~~~l~lIVIDEAH~l~-~~G~d 176 (724)
+|+.+..+.++.....+...+ .++|+|+||-.+.-......+ .....+..+.++||||||.|+ +.|..
T Consensus 142 lgl~v~~i~GG~~~~~r~~~~--------~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~t 213 (853)
T 2fsf_A 142 LGLTVGINLPGMPAPAKREAY--------AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEART 213 (853)
T ss_dssp TTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTC
T ss_pred cCCeEEEEeCCCCHHHHHHhc--------CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcc
Confidence 588888888887665443322 267877777654211111111 112345679999999999998 44310
Q ss_pred ----------ChHHHHHHHHHHhhCC---------------------CCCEE------------------------EEee
Q 004900 177 ----------FRPSYRKLSSLRNYLP---------------------DVPIL------------------------ALTA 201 (724)
Q Consensus 177 ----------Frp~y~~L~~l~~~~p---------------------~~pil------------------------~LSA 201 (724)
-...|..+..+...+| ..+++ ++||
T Consensus 214 pLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsa 293 (853)
T 2fsf_A 214 PLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSP 293 (853)
T ss_dssp EEEEEEC-------------------------------------------------------------------------
T ss_pred cccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCc
Confidence 0012333333333332 22222 6777
Q ss_pred cCCh---hhHHHHHH-hh--------------------------------ccC---------------------------
Q 004900 202 TAAP---KVQKDVME-SL--------------------------------CLQ--------------------------- 218 (724)
Q Consensus 202 T~~~---~v~~di~~-~l--------------------------------~l~--------------------------- 218 (724)
|.++ .+...+.. .+ |+.
T Consensus 294 t~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyf 373 (853)
T 2fsf_A 294 ANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYF 373 (853)
T ss_dssp ---------------------------------------------------------------CCCCCEEEEEEEHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHH
Confidence 7543 11100000 00 000
Q ss_pred ------------------------CCeEeeccCCCCceEEE---EEeccchhhHHHHHHHHHHh--cCCceEEEEecccc
Q 004900 219 ------------------------NPLVLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERT 269 (724)
Q Consensus 219 ------------------------~~~vi~~s~~r~ni~~~---v~~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~ 269 (724)
+..++..+.++|..... +.+. ...+++..|.+.+.. ..+.++||||+|++
T Consensus 374 r~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~-~~~~K~~al~~~i~~~~~~gqpvLVft~sie 452 (853)
T 2fsf_A 374 RLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYM-TEAEKIQAIIEDIKERTAKGQPVLVGTISIE 452 (853)
T ss_dssp TTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEES-SHHHHHHHHHHHHHHHHTTTCCEEEEESSHH
T ss_pred hhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEe-CHHHHHHHHHHHHHHHhcCCCCEEEEECcHH
Confidence 00111222333333221 1122 235788888887754 35678999999999
Q ss_pred cHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCc----------------------
Q 004900 270 TCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------------- 327 (724)
Q Consensus 270 ~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V---------------------- 327 (724)
.++.|+..|...|+++..+||++.+.++..+.+.|+.| .|+|||+++|||+|++..
T Consensus 453 ~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~ 530 (853)
T 2fsf_A 453 KSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIK 530 (853)
T ss_dssp HHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHH
Confidence 99999999999999999999999988998888899988 699999999999999973
Q ss_pred ---------------ceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 328 ---------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 328 ---------------~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
.+||+++.|.|...|.|++||+||.|.+|.++.|++.+|.
T Consensus 531 ~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD~ 585 (853)
T 2fsf_A 531 ADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMEDA 585 (853)
T ss_dssp HHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTSG
T ss_pred HHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccHH
Confidence 5999999999999999999999999999999999998773
No 46
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=2.2e-33 Score=325.14 Aligned_cols=303 Identities=18% Similarity=0.184 Sum_probs=194.8
Q ss_pred CCCHHHHHHHHHHHc----C-CcEEEEcCCCchHHHHHHHHHH---c---------CCCeEEEEcCcHHHHHHHH-HHHH
Q 004900 38 QFRDKQLDAIQAVLS----G-RDCFCLMPTGGGKSMCYQIPAL---A---------KPGIVLVVSPLIALMENQV-IGLK 99 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~----g-~dvlv~apTGsGKTl~~~lpal---~---------~~~~vLVlsPl~aL~~qqv-~~l~ 99 (724)
.+||+|.++|+.++. | +++++++|||+|||++++..+. . ..+++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999875 4 5689999999999998654432 1 4578999999999999999 7888
Q ss_pred HcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChH
Q 004900 100 EKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRP 179 (724)
Q Consensus 100 ~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp 179 (724)
.++.....+.... .....+|+++||+.+........+........+++|||||||++...+
T Consensus 258 ~~~~~~~~~~~~~--------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~----- 318 (590)
T 3h1t_A 258 PFGDARHKIEGGK--------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD----- 318 (590)
T ss_dssp TTCSSEEECCC----------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC-----------
T ss_pred hcchhhhhhhccC--------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-----
Confidence 8876655444211 123478999999987653211111222334568999999999997643
Q ss_pred HHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEe-------eccCCCCceEEEEEec-------------
Q 004900 180 SYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-------KSSFNRPNLFYEVRYK------------- 239 (724)
Q Consensus 180 ~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi-------~~s~~r~ni~~~v~~~------------- 239 (724)
+..+..+...+++.++++||||+......+....++. +... ...+..|...+.+...
T Consensus 319 -~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~--~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 395 (590)
T 3h1t_A 319 -NSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGN--PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDV 395 (590)
T ss_dssp ----CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS--CSEEECHHHHHHHTSSCCEEEEEEEETTCC----------
T ss_pred -hHHHHHHHHhCCcceEEEeccccccccchhHHHHcCC--ceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccc
Confidence 1234555667788889999999987655555544432 1110 0011111111111110
Q ss_pred --------------cc----------hhhHHHHHHHHHHh-cCCceEEEEecccccHHHHHHHHHhCCCc--------ee
Q 004900 240 --------------DL----------LDDAYADLCSVLKA-NGDTCAIVYCLERTTCDELSAYLSAGGIS--------CA 286 (724)
Q Consensus 240 --------------~~----------~~~k~~~L~~lLk~-~~~~~~IIf~~sr~~~e~La~~L~~~gi~--------v~ 286 (724)
.. .......+.++++. ....++||||+++.+|+.++..|.+.+.. +.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~ 475 (590)
T 3h1t_A 396 DRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVA 475 (590)
T ss_dssp -------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEE
T ss_pred cccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEE
Confidence 00 00112234444444 34578999999999999999999875432 66
Q ss_pred eecCCCCHHHHHHHHHHhhcCCce---EEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCC--CCeEEEE
Q 004900 287 AYHAGLNDKARSSVLDDWISSRKQ---VVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQL--PSKSLLY 361 (724)
Q Consensus 287 ~~H~~l~~~eR~~vl~~F~~g~~~---VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~--~g~~il~ 361 (724)
.+||++++ +|..++++|++|+.+ |||||+++++|||+|+|++||++++|.|+..|+|++||+||.|. ....+++
T Consensus 476 ~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~~~~k~~~~I 554 (590)
T 3h1t_A 476 RVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLREDYGKLWFNI 554 (590)
T ss_dssp ECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBGGGTBSCEEE
T ss_pred EEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCccCCCCEEEE
Confidence 78888754 799999999998866 88999999999999999999999999999999999999999875 3344444
Q ss_pred Ec
Q 004900 362 YG 363 (724)
Q Consensus 362 ~~ 363 (724)
++
T Consensus 555 ~D 556 (590)
T 3h1t_A 555 ID 556 (590)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 47
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.1e-32 Score=322.23 Aligned_cols=326 Identities=17% Similarity=0.135 Sum_probs=239.6
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH----
Q 004900 28 KLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE---- 100 (724)
Q Consensus 28 ~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~---- 100 (724)
.+.++.+|+ .++++|..+++.++.|+ |+.|+||+|||++|.+|++. .+..++||+|++.|+.|..+.+..
T Consensus 102 Ea~~R~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~ 178 (922)
T 1nkt_A 102 EAAWRVLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRF 178 (922)
T ss_dssp HHHHHHHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhh
Confidence 456678899 79999999999999998 99999999999999999963 467899999999999887777655
Q ss_pred cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH---HhhhhcCCccEEEEccccccc-cCCC-
Q 004900 101 KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCIS-SWGH- 175 (724)
Q Consensus 101 ~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L---~~~~~~~~l~lIVIDEAH~l~-~~G~- 175 (724)
+|+.+.++.++.....+...+ ..+|+|+||..+.-......+ .....+..+.++||||||.|+ +.+.
T Consensus 179 lGLsv~~i~gg~~~~~r~~~y--------~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeart 250 (922)
T 1nkt_A 179 LGLQVGVILATMTPDERRVAY--------NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEART 250 (922)
T ss_dssp TTCCEEECCTTCCHHHHHHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGS
T ss_pred cCCeEEEEeCCCCHHHHHHhc--------CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcc
Confidence 589998888887765544433 267888888765322111111 112345668999999999997 4321
Q ss_pred ---------CChHHHHHHHHHHhhCC----------CCCEE-----------------EEeecCCh---hhHHHHHHh-h
Q 004900 176 ---------DFRPSYRKLSSLRNYLP----------DVPIL-----------------ALTATAAP---KVQKDVMES-L 215 (724)
Q Consensus 176 ---------dFrp~y~~L~~l~~~~p----------~~pil-----------------~LSAT~~~---~v~~di~~~-l 215 (724)
+-...|..+..+...++ +.+++ ++|||.++ .+...+... +
T Consensus 251 PLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l 330 (922)
T 1nkt_A 251 PLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKEL 330 (922)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHH
T ss_pred ceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHH
Confidence 11235667777777775 34565 67888664 222111111 1
Q ss_pred ccCC-------Ce-------------------------------------------------------------------
Q 004900 216 CLQN-------PL------------------------------------------------------------------- 221 (724)
Q Consensus 216 ~l~~-------~~------------------------------------------------------------------- 221 (724)
...+ ..
T Consensus 331 ~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~ 410 (922)
T 1nkt_A 331 FSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAA 410 (922)
T ss_dssp CCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHH
Confidence 0000 00
Q ss_pred ---------EeeccCCCCceEEE---EEeccchhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCCceee
Q 004900 222 ---------VLKSSFNRPNLFYE---VRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAA 287 (724)
Q Consensus 222 ---------vi~~s~~r~ni~~~---v~~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~ 287 (724)
++..+.++|.+... +.+. ...+++..|...+.. ..+.++||||+|++.++.|+..|...|+++..
T Consensus 411 Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~-t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~v 489 (922)
T 1nkt_A 411 ELHEIYKLGVVSIPTNMPMIREDQSDLIYK-TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNV 489 (922)
T ss_dssp HHHHHHCCEEEECCCSSCCCCEECCCEEES-CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHHhCCCeEEeCCCCCcccccCCcEEEe-CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 11112223322211 1112 235677777777654 24568999999999999999999999999999
Q ss_pred ecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCc----------------------------------------
Q 004900 288 YHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDV---------------------------------------- 327 (724)
Q Consensus 288 ~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V---------------------------------------- 327 (724)
+||++.+.++..+.+.|+.| .|+|||+++|||+|++.+
T Consensus 490 Lnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 567 (922)
T 1nkt_A 490 LNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEA 567 (922)
T ss_dssp ECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHT
T ss_pred ecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHH
Confidence 99999888888888888887 699999999999999975
Q ss_pred ------------ceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 328 ------------RLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 328 ------------~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
.+||+++.|.|...|.|++||+||.|.+|.++.|++.+|.
T Consensus 568 ~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 568 SKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp THHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred HHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 5999999999999999999999999999999999998775
No 48
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.2e-33 Score=333.98 Aligned_cols=327 Identities=16% Similarity=0.151 Sum_probs=235.0
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHc-CCcEEEEcCCCchHHHHHHHHHHc------C--CCeEEEE
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLS-GRDCFCLMPTGGGKSMCYQIPALA------K--PGIVLVV 84 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~-g~dvlv~apTGsGKTl~~~lpal~------~--~~~vLVl 84 (724)
...|..+++.+.+.+.++.. | ..+.+.|.++|..++. |+++++++|||+|||+ ++|.+. . +..++|+
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r-~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl 146 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIR-R-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACT 146 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHH-T-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEE
T ss_pred CCCccccCCCHHHHHHHHHh-h-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEec
Confidence 45688899999999999885 5 5677888888877775 5679999999999999 455442 1 4569999
Q ss_pred cCcHHHHHHHHHHHHH-cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEE
Q 004900 85 SPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (724)
Q Consensus 85 sPl~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIV 163 (724)
+|+++|+.|+...+.. +++......+.... .. .......+|+++||+++.. .+........+++||
T Consensus 147 ~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~------~~--~~~~~~~~I~v~T~G~l~r-----~l~~~~~l~~~~~lI 213 (773)
T 2xau_A 147 QPRRVAAMSVAQRVAEEMDVKLGEEVGYSIR------FE--NKTSNKTILKYMTDGMLLR-----EAMEDHDLSRYSCII 213 (773)
T ss_dssp ESCHHHHHHHHHHHHHHTTCCBTTTEEEEET------TE--EECCTTCSEEEEEHHHHHH-----HHHHSTTCTTEEEEE
T ss_pred CchHHHHHHHHHHHHHHhCCchhheecceec------cc--cccCCCCCEEEECHHHHHH-----HHhhCccccCCCEEE
Confidence 9999999999887755 44433222111100 00 0112346787777765432 222233456799999
Q ss_pred Eccccc-cccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEecc--
Q 004900 164 IDEAHC-ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD-- 240 (724)
Q Consensus 164 IDEAH~-l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~-- 240 (724)
|||+|. ..+ ....+..+..+....++.++++||||++.. .+...++ ..+.+...+... .+...+....
T Consensus 214 lDEah~R~ld----~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~---~l~~~~~-~~~vi~v~gr~~-pv~~~~~~~~~~ 284 (773)
T 2xau_A 214 LDEAHERTLA----TDILMGLLKQVVKRRPDLKIIIMSATLDAE---KFQRYFN-DAPLLAVPGRTY-PVELYYTPEFQR 284 (773)
T ss_dssp ECSGGGCCHH----HHHHHHHHHHHHHHCTTCEEEEEESCSCCH---HHHHHTT-SCCEEECCCCCC-CEEEECCSSCCS
T ss_pred ecCccccccc----hHHHHHHHHHHHHhCCCceEEEEeccccHH---HHHHHhc-CCCcccccCccc-ceEEEEecCCch
Confidence 999996 332 111233455566667889999999999754 3444443 223322222222 2222211111
Q ss_pred -chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHh-----------CCCceeeecCCCCHHHHHHHHHHhh---
Q 004900 241 -LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-----------GGISCAAYHAGLNDKARSSVLDDWI--- 305 (724)
Q Consensus 241 -~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~-----------~gi~v~~~H~~l~~~eR~~vl~~F~--- 305 (724)
.....+..+..++....++++||||+++++++.++..|.+ .++.+..+||+|++++|..+++.|.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~ 364 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESH 364 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCS
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccccc
Confidence 1223344555555555678999999999999999999985 5788999999999999999999999
Q ss_pred --cCCceEEEEccccccccCCCCcceEEeeCC------------------CCCHHHHHHHHcccCCCCCCCeEEEEEccc
Q 004900 306 --SSRKQVVVATVAFGMGIDRKDVRLVCHFNI------------------PKSMEAFYQESGRAGRDQLPSKSLLYYGMD 365 (724)
Q Consensus 306 --~g~~~VLVAT~a~g~GIDip~V~~VI~~d~------------------P~S~~~yiQr~GRAGRdG~~g~~il~~~~~ 365 (724)
+|..+|||||+++++|||+|+|++||++++ |.|..+|+||+|||||. .+|.|+.+|+..
T Consensus 365 ~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~ 443 (773)
T 2xau_A 365 NGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 443 (773)
T ss_dssp SSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHH
T ss_pred CCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHH
Confidence 999999999999999999999999999888 88999999999999999 799999999876
Q ss_pred cH
Q 004900 366 DR 367 (724)
Q Consensus 366 D~ 367 (724)
+.
T Consensus 444 ~~ 445 (773)
T 2xau_A 444 AF 445 (773)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=1.6e-34 Score=325.42 Aligned_cols=269 Identities=14% Similarity=0.130 Sum_probs=186.0
Q ss_pred HHHHHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHh
Q 004900 47 IQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYE 122 (724)
Q Consensus 47 I~ail~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~ 122 (724)
...+.+|+++++++|||+|||++|++|++. .+..+||++|+++|+.|+.+.+.. .............
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g--~~v~~~~~~~~~~------- 85 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRG--LPVRYQTSAVQRE------- 85 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTT--SCEEECC-------------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcC--ceEeEEecccccC-------
Confidence 344567889999999999999999999875 578999999999999999998873 3322221111100
Q ss_pred hhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccc-----ccCCCCChHHHHHHHHHHhhCCCCCEE
Q 004900 123 DLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-----SSWGHDFRPSYRKLSSLRNYLPDVPIL 197 (724)
Q Consensus 123 ~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l-----~~~G~dFrp~y~~L~~l~~~~p~~pil 197 (724)
..+...+.+++... +...+........+++|||||||++ ..+| -+.. +...++.+++
T Consensus 86 ----~t~~~~i~~~~~~~-----l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~--------~~~~-~~~~~~~~~i 147 (459)
T 2z83_A 86 ----HQGNEIVDVMCHAT-----LTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARG--------YIAT-KVELGEAAAI 147 (459)
T ss_dssp ------CCCSEEEEEHHH-----HHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHH--------HHHH-HHHTTSCEEE
T ss_pred ----CCCCcEEEEEchHH-----HHHHhhccccccCCcEEEEECCccCCchhhHHHH--------HHHH-HhccCCccEE
Confidence 01122233333222 2223333344567999999999984 3322 1111 2234689999
Q ss_pred EEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHH
Q 004900 198 ALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAY 277 (724)
Q Consensus 198 ~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~ 277 (724)
+||||++..+.. ......|+..... ..+ ...+..+..++... ++++||||++++.++.++..
T Consensus 148 l~SAT~~~~~~~----~~~~~~pi~~~~~-~~~------------~~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~ 209 (459)
T 2z83_A 148 FMTATPPGTTDP----FPDSNAPIHDLQD-EIP------------DRAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMC 209 (459)
T ss_dssp EECSSCTTCCCS----SCCCSSCEEEEEC-CCC------------SSCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHH
T ss_pred EEEcCCCcchhh----hccCCCCeEEecc-cCC------------cchhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHH
Confidence 999999876421 1111222221100 000 00111122334444 46899999999999999999
Q ss_pred HHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEe--------------------eCCCC
Q 004900 278 LSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCH--------------------FNIPK 337 (724)
Q Consensus 278 L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~--------------------~d~P~ 337 (724)
|...|+.+..+|+. +|..+++.|.+|+.+|||||+++++|||+|+ ++||+ |++|.
T Consensus 210 L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~ 284 (459)
T 2z83_A 210 LQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPI 284 (459)
T ss_dssp HHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEEC
T ss_pred HHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCC
Confidence 99999999999995 6788899999999999999999999999999 99999 77999
Q ss_pred CHHHHHHHHcccCCCCC-CCeEEEEEccc
Q 004900 338 SMEAFYQESGRAGRDQL-PSKSLLYYGMD 365 (724)
Q Consensus 338 S~~~yiQr~GRAGRdG~-~g~~il~~~~~ 365 (724)
|..+|+||+|||||.|. +|.|++|+...
T Consensus 285 s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 285 TSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 99999999999999997 99999999875
No 50
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.2e-32 Score=333.09 Aligned_cols=316 Identities=17% Similarity=0.182 Sum_probs=228.4
Q ss_pred CCCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHHHHHHc---C--CCeEEEEcCcHHHHHHHHHHH-HHcCCceeee
Q 004900 37 AQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALA---K--PGIVLVVSPLIALMENQVIGL-KEKGIAGEFL 108 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~lpal~---~--~~~vLVlsPl~aL~~qqv~~l-~~~gi~~~~l 108 (724)
..|+|+|.+++..++.. ..+|+.++||+|||++++..+.. . .+++|||+|+ +|+.||...+ +.+++++..+
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 46899999999998864 47899999999999988665532 3 3489999999 9999999999 5578877766
Q ss_pred cccchHHHHHHHHhhhhcCCCCccEEEeCcccccCh-hHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHH
Q 004900 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATP-GFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSL 187 (724)
Q Consensus 109 ~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~-~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l 187 (724)
++..... ............+|+++|++.+... .....+ ....+++|||||||++..++......|..+..+
T Consensus 231 ~~~~~~~----~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l----~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L 302 (968)
T 3dmq_A 231 DDERYAE----AQHDAYNPFDTEQLVICSLDFARRSKQRLEHL----CEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQL 302 (968)
T ss_dssp CHHHHHH----HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHH----HTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHH
T ss_pred ccchhhh----hhhhcccccccCCEEEEcHHHHhhCHHHHHHh----hhcCCCEEEehhhHhhcCCCCcchHHHHHHHHH
Confidence 5433221 1111112223478999999988543 222222 234589999999999987665555557677666
Q ss_pred HhhCCCCCEEEEeecCChhhHHHHHHhhccCCCe----------------------------------------------
Q 004900 188 RNYLPDVPILALTATAAPKVQKDVMESLCLQNPL---------------------------------------------- 221 (724)
Q Consensus 188 ~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~---------------------------------------------- 221 (724)
... ...+++||||+.+....++...+.+..+.
T Consensus 303 ~~~--~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 303 AEH--VPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HTT--CSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred hhc--CCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 543 34599999998652222111111110000
Q ss_pred ------------------------------------Eeec------cCCCCce-EEEEE---------------------
Q 004900 222 ------------------------------------VLKS------SFNRPNL-FYEVR--------------------- 237 (724)
Q Consensus 222 ------------------------------------vi~~------s~~r~ni-~~~v~--------------------- 237 (724)
.+.. .+..... .+.+.
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000 0000000 00000
Q ss_pred ----------------------eccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHh-CCCceeeecCCCCH
Q 004900 238 ----------------------YKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSA-GGISCAAYHAGLND 294 (724)
Q Consensus 238 ----------------------~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~-~gi~v~~~H~~l~~ 294 (724)
.......+...|.+++....+.++||||+++..++.++..|.. .|+.+..+||+|++
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~ 540 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSI 540 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCT
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 0011234677888888887788999999999999999999995 59999999999999
Q ss_pred HHHHHHHHHhhcCC--ceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEc
Q 004900 295 KARSSVLDDWISSR--KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYG 363 (724)
Q Consensus 295 ~eR~~vl~~F~~g~--~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~ 363 (724)
.+|..++++|++|+ ++|||||+++++|+|+|++++||+||+|+++..|+|++||+||.|+.+.+++|+.
T Consensus 541 ~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~ 611 (968)
T 3dmq_A 541 IERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVP 611 (968)
T ss_dssp THHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEE
T ss_pred HHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEe
Confidence 99999999999998 9999999999999999999999999999999999999999999999997766643
No 51
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=4.3e-34 Score=331.25 Aligned_cols=277 Identities=22% Similarity=0.215 Sum_probs=201.6
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHH-cCCceeeecccchHHH
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQV 116 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~ 116 (724)
.++++|.+++..+.++++++++||||+|||++|.+|++.++.++||++||++|+.|..+.+.+ ++.......+...
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~--- 293 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT--- 293 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE---
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe---
Confidence 356677777777778899999999999999999999999888999999999999999888765 5655544443321
Q ss_pred HHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCE
Q 004900 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (724)
Q Consensus 117 ~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pi 196 (724)
.....+|+++||+.+.. ........+++|||||||++.. +|...+..+.......+...+
T Consensus 294 ----------~~~~~~IlV~TPGrLl~-------~~~l~l~~l~~lVlDEAH~l~~---~~~~~l~~Il~~l~~~~~~ll 353 (666)
T 3o8b_A 294 ----------ITTGAPVTYSTYGKFLA-------DGGCSGGAYDIIICDECHSTDS---TTILGIGTVLDQAETAGARLV 353 (666)
T ss_dssp ----------ECCCCSEEEEEHHHHHH-------TTSCCTTSCSEEEETTTTCCSH---HHHHHHHHHHHHTTTTTCSEE
T ss_pred ----------ccCCCCEEEECcHHHHh-------CCCcccCcccEEEEccchhcCc---cHHHHHHHHHHhhhhcCCceE
Confidence 12347888888887521 1223345599999999998653 255555444333332223347
Q ss_pred EEEeecCChhhHHHHHHhhccCCCeEee--ccCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHH
Q 004900 197 LALTATAAPKVQKDVMESLCLQNPLVLK--SSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDEL 274 (724)
Q Consensus 197 l~LSAT~~~~v~~di~~~l~l~~~~vi~--~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~L 274 (724)
+++|||++..+ ....+.+.. ...... +.+. .... . +....+.++||||++++.++.+
T Consensus 354 il~SAT~~~~i--------~~~~p~i~~v~~~~~~~-i~~~--~~~~-~---------l~~~~~~~vLVFv~Tr~~ae~l 412 (666)
T 3o8b_A 354 VLATATPPGSV--------TVPHPNIEEVALSNTGE-IPFY--GKAI-P---------IEAIRGGRHLIFCHSKKKCDEL 412 (666)
T ss_dssp EEEESSCTTCC--------CCCCTTEEEEECBSCSS-EEET--TEEE-C---------GGGSSSSEEEEECSCHHHHHHH
T ss_pred EEECCCCCccc--------ccCCcceEEEeecccch-hHHH--Hhhh-h---------hhhccCCcEEEEeCCHHHHHHH
Confidence 88899998742 122222111 111111 1110 0000 0 1223567899999999999999
Q ss_pred HHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEE----------eeC----------
Q 004900 275 SAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVC----------HFN---------- 334 (724)
Q Consensus 275 a~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI----------~~d---------- 334 (724)
++.|.+.|+.+..+||+|++++ |.++..+|||||+++++|||+| |++|| |||
T Consensus 413 a~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~ 484 (666)
T 3o8b_A 413 AAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETT 484 (666)
T ss_dssp HHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEE
T ss_pred HHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccc
Confidence 9999999999999999999864 5566779999999999999996 99999 577
Q ss_pred -CCCCHHHHHHHHcccCCCCCCCeEEEEEccccHH
Q 004900 335 -IPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRR 368 (724)
Q Consensus 335 -~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~ 368 (724)
+|.+.++|+||+||+|| |.+|. ++||.+.|..
T Consensus 485 ~~P~s~~syiQRiGRtGR-g~~G~-i~lvt~~e~~ 517 (666)
T 3o8b_A 485 TVPQDAVSRSQRRGRTGR-GRRGI-YRFVTPGERP 517 (666)
T ss_dssp EEECBHHHHHHHHTTBCS-SSCEE-EEESCCCCBC
T ss_pred cCcCCHHHHHHHhccCCC-CCCCE-EEEEecchhh
Confidence 89999999999999999 99999 9999877654
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=1.7e-33 Score=314.63 Aligned_cols=266 Identities=15% Similarity=0.113 Sum_probs=181.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHH----cCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcC
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPAL----AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpal----~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~ 127 (724)
+|+++++++|||+|||++|++|++ ..+..++|++||++|+.|+.+.+. |+.+....+.... ..
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~---------~~-- 67 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQS---------ER-- 67 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC-------------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccc---------cC--
Confidence 478999999999999999988887 457799999999999999888876 4444433322110 11
Q ss_pred CCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhh
Q 004900 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (724)
Q Consensus 128 ~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v 207 (724)
.+...+.+++...+ ...+........+++|||||||++..+ +......+..+. ..++.++++||||+++.+
T Consensus 68 ~~~~~~~~~~~~~l-----~~~l~~~~~~~~l~~vViDEaH~~~~~---~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~~ 138 (431)
T 2v6i_A 68 TGNEIVDFMCHSTF-----TMKLLQGVRVPNYNLYIMDEAHFLDPA---SVAARGYIETRV-SMGDAGAIFMTATPPGTT 138 (431)
T ss_dssp -CCCSEEEEEHHHH-----HHHHHHTCCCCCCSEEEEESTTCCSHH---HHHHHHHHHHHH-HTTSCEEEEEESSCTTCC
T ss_pred CCCceEEEEchHHH-----HHHHhcCccccCCCEEEEeCCccCCcc---HHHHHHHHHHHh-hCCCCcEEEEeCCCCcch
Confidence 11122333333222 223333334667999999999997432 222222232222 235899999999999753
Q ss_pred HHHHHHhhccCCCeEeeccCCCCceEEE-EEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCcee
Q 004900 208 QKDVMESLCLQNPLVLKSSFNRPNLFYE-VRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (724)
Q Consensus 208 ~~di~~~l~l~~~~vi~~s~~r~ni~~~-v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~ 286 (724)
.. +.. .++.+... .... ...+..+..++... ++++||||++++.++.+++.|+..|+.+.
T Consensus 139 ~~-------~~~--------~~~~i~~~~~~~~---~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~ 199 (431)
T 2v6i_A 139 EA-------FPP--------SNSPIIDEETRIP---DKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVL 199 (431)
T ss_dssp CS-------SCC--------CSSCCEEEECCCC---SSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred hh-------hcC--------CCCceeeccccCC---HHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEE
Confidence 21 110 01111110 0100 01112233444444 45899999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcce-----------------EEeeCCCCCHHHHHHHHccc
Q 004900 287 AYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRL-----------------VCHFNIPKSMEAFYQESGRA 349 (724)
Q Consensus 287 ~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~-----------------VI~~d~P~S~~~yiQr~GRA 349 (724)
.+||+ +|..+++.|.+|+++|||||+++++|||+| +.+ ||+++.|.+..+|+||+||+
T Consensus 200 ~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~ 274 (431)
T 2v6i_A 200 YLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRI 274 (431)
T ss_dssp EESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhcc
Confidence 99997 577899999999999999999999999999 544 68899999999999999999
Q ss_pred CCCCCCCeEEEEEc
Q 004900 350 GRDQLPSKSLLYYG 363 (724)
Q Consensus 350 GRdG~~g~~il~~~ 363 (724)
||.|..+.|+++|.
T Consensus 275 GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 275 GRNPEKLGDIYAYS 288 (431)
T ss_dssp SCCTTCCCCEEEEC
T ss_pred CCCCCCCCeEEEEc
Confidence 99996555555554
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.98 E-value=1.1e-31 Score=313.77 Aligned_cols=288 Identities=16% Similarity=0.212 Sum_probs=204.4
Q ss_pred HHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcC
Q 004900 48 QAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSG 127 (724)
Q Consensus 48 ~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~ 127 (724)
...+.|++++++||||+|||+ ..+..+...+..+|++|+++|+.|+++.++..|+++..+.++... .+...
T Consensus 150 ar~l~rk~vlv~apTGSGKT~-~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~--------iv~Tp 220 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY-HAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV--------TVQPN 220 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH-HHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE--------CCSTT
T ss_pred HHhcCCCEEEEEcCCCCCHHH-HHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE--------EecCC
Confidence 344688999999999999999 444455555667999999999999999999999988877765433 00111
Q ss_pred CCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChh
Q 004900 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPK 206 (724)
Q Consensus 128 ~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~ 206 (724)
....+++.+|+|++.. ...+++|||||||++.+.+ |...+..+ +.... ++++++++|||. .
T Consensus 221 Gr~~~il~~T~e~~~l------------~~~v~lvVIDEaH~l~d~~--~g~~~~~~--l~~l~~~~i~il~~SAT~--~ 282 (677)
T 3rc3_A 221 GKQASHVSCTVEMCSV------------TTPYEVAVIDEIQMIRDPA--RGWAWTRA--LLGLCAEEVHLCGEPAAI--D 282 (677)
T ss_dssp CCCCSEEEEEGGGCCS------------SSCEEEEEECSGGGGGCTT--THHHHHHH--HHHCCEEEEEEEECGGGH--H
T ss_pred CcccceeEecHhHhhh------------cccCCEEEEecceecCCcc--chHHHHHH--HHccCccceEEEeccchH--H
Confidence 1135677777776542 2347999999999998755 44444332 22222 367788888883 2
Q ss_pred hHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCcee
Q 004900 207 VQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCA 286 (724)
Q Consensus 207 v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~ 286 (724)
....+....+ ....+ ..+.+..-. .+.... +. .+.... ...||||++++.++.++..|.+.|+.+.
T Consensus 283 ~i~~l~~~~~--~~~~v-~~~~r~~~l-~~~~~~-----l~----~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v~ 348 (677)
T 3rc3_A 283 LVMELMYTTG--EEVEV-RDYKRLTPI-SVLDHA-----LE----SLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLESA 348 (677)
T ss_dssp HHHHHHHHHT--CCEEE-EECCCSSCE-EECSSC-----CC----SGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCCE
T ss_pred HHHHHHHhcC--CceEE-EEeeecchH-HHHHHH-----HH----HHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCee
Confidence 3333443332 22222 122222111 111010 00 111122 3459999999999999999999999999
Q ss_pred eecCCCCHHHHHHHHHHhhc--CCceEEEEccccccccCCCCcceEEeeCC--------------CCCHHHHHHHHcccC
Q 004900 287 AYHAGLNDKARSSVLDDWIS--SRKQVVVATVAFGMGIDRKDVRLVCHFNI--------------PKSMEAFYQESGRAG 350 (724)
Q Consensus 287 ~~H~~l~~~eR~~vl~~F~~--g~~~VLVAT~a~g~GIDip~V~~VI~~d~--------------P~S~~~yiQr~GRAG 350 (724)
.+||+|++++|..+++.|.+ |.++|||||+++++|||+ +|++||++++ |.|..+|+||+||||
T Consensus 349 ~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAG 427 (677)
T 3rc3_A 349 VIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAG 427 (677)
T ss_dssp EECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBT
T ss_pred eeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCC
Confidence 99999999999999999999 889999999999999999 9999999999 779999999999999
Q ss_pred CCCCC---CeEEEEEccccHHHHHHHHHhcc
Q 004900 351 RDQLP---SKSLLYYGMDDRRRMEFILSKNQ 378 (724)
Q Consensus 351 RdG~~---g~~il~~~~~D~~~~~~i~~~~~ 378 (724)
|.|.. |.|+++ ...|...++.++....
T Consensus 428 R~g~~g~~G~v~~l-~~~d~~~~~~~~~~~~ 457 (677)
T 3rc3_A 428 RFSSRFKEGEVTTM-NHEDLSLLKEILKRPV 457 (677)
T ss_dssp CTTSSCSSEEEEES-STTHHHHHHHHHHSCC
T ss_pred CCCCCCCCEEEEEE-ecchHHHHHHHHhcCc
Confidence 99965 555544 4556666666666543
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=1.4e-30 Score=295.19 Aligned_cols=299 Identities=15% Similarity=0.135 Sum_probs=211.0
Q ss_pred CCCCHHHHHHHHHHH----cCCcEEEEcCCCchHHHHHHHHHHc-----CCCeEEEEcCcHHHHHHHHHHHHHcC--Cce
Q 004900 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPALA-----KPGIVLVVSPLIALMENQVIGLKEKG--IAG 105 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail----~g~dvlv~apTGsGKTl~~~lpal~-----~~~~vLVlsPl~aL~~qqv~~l~~~g--i~~ 105 (724)
..|+|+|.+++..+. .++++++.++||+|||++++..+.. ..+.+|||+|+ +|+.||.++++++. ..+
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCCCceE
Confidence 469999999998763 5789999999999999986543321 24689999994 68899999999974 344
Q ss_pred eeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHH
Q 004900 106 EFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLS 185 (724)
Q Consensus 106 ~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~ 185 (724)
..+++.... ......+|+++|++.+..... .....+++|||||||++...+. ...
T Consensus 115 ~~~~g~~~~-----------~~~~~~~ivi~t~~~l~~~~~-------l~~~~~~~vIvDEaH~~kn~~~-------~~~ 169 (500)
T 1z63_A 115 AVFHEDRSK-----------IKLEDYDIILTTYAVLLRDTR-------LKEVEWKYIVIDEAQNIKNPQT-------KIF 169 (500)
T ss_dssp EECSSSTTS-----------CCGGGSSEEEEEHHHHTTCHH-------HHTCCEEEEEEETGGGGSCTTS-------HHH
T ss_pred EEEecCchh-----------ccccCCcEEEeeHHHHhccch-------hcCCCcCEEEEeCccccCCHhH-------HHH
Confidence 444433211 111246899999998876432 1233589999999999976441 222
Q ss_pred HHHhhCCCCCEEEEeecCChhhHHHHHHhhccCC----------------------------------CeEeecc-----
Q 004900 186 SLRNYLPDVPILALTATAAPKVQKDVMESLCLQN----------------------------------PLVLKSS----- 226 (724)
Q Consensus 186 ~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~----------------------------------~~vi~~s----- 226 (724)
.....++...+++||||+..+...++...+.+-. +.++...
T Consensus 170 ~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~ 249 (500)
T 1z63_A 170 KAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKA 249 (500)
T ss_dssp HHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHH
T ss_pred HHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccc
Confidence 2333445567899999998766555544433221 2222111
Q ss_pred --CCCCceEEEEEeccc--------------------------------------------------------hhhHHHH
Q 004900 227 --FNRPNLFYEVRYKDL--------------------------------------------------------LDDAYAD 248 (724)
Q Consensus 227 --~~r~ni~~~v~~~~~--------------------------------------------------------~~~k~~~ 248 (724)
...|.....+..... ...++..
T Consensus 250 ~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~ 329 (500)
T 1z63_A 250 IINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIR 329 (500)
T ss_dssp HHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHH
T ss_pred hhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHH
Confidence 122332222221110 0123334
Q ss_pred HHHHHHhc--CCceEEEEecccccHHHHHHHHHhC-CCceeeecCCCCHHHHHHHHHHhhcC-Cce-EEEEccccccccC
Q 004900 249 LCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVAFGMGID 323 (724)
Q Consensus 249 L~~lLk~~--~~~~~IIf~~sr~~~e~La~~L~~~-gi~v~~~H~~l~~~eR~~vl~~F~~g-~~~-VLVAT~a~g~GID 323 (724)
+.+++... .+.++||||+++..++.++..|... |+.+..+||+++..+|..++++|++| ..+ +||+|+++++|+|
T Consensus 330 l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gln 409 (500)
T 1z63_A 330 TMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGIN 409 (500)
T ss_dssp HHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCC
T ss_pred HHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCc
Confidence 44555432 5678999999999999999999885 99999999999999999999999998 555 7999999999999
Q ss_pred CCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEE
Q 004900 324 RKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (724)
Q Consensus 324 ip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~ 361 (724)
++++++||++|+|+++..|.|++||++|.|+...+.+|
T Consensus 410 l~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 410 LTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp CTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred hhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 99999999999999999999999999999998876554
No 55
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.6e-28 Score=285.71 Aligned_cols=310 Identities=15% Similarity=0.155 Sum_probs=208.7
Q ss_pred CCCHHHHHHHHHHH---------cCCcEEEEcCCCchHHHHHHHHHH--c-C-------CCeEEEEcCcHHHHHHHHHHH
Q 004900 38 QFRDKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCYQIPAL--A-K-------PGIVLVVSPLIALMENQVIGL 98 (724)
Q Consensus 38 ~lr~~Q~eaI~ail---------~g~dvlv~apTGsGKTl~~~lpal--~-~-------~~~vLVlsPl~aL~~qqv~~l 98 (724)
.+||+|.+++..+. .++.+|+..+||.|||+..+..+. . . ...+|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999999874 346789999999999987654432 1 1 2469999997 8899999999
Q ss_pred HHcC---CceeeecccchHHHHHHHHhhhhcC--CCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccC
Q 004900 99 KEKG---IAGEFLSSTQTMQVKTKIYEDLDSG--KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (724)
Q Consensus 99 ~~~g---i~~~~l~s~~~~~~~~~i~~~l~~~--~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~ 173 (724)
.++. +....+.++........+....... ....+++++|++.+... ........+++||+||||++...
T Consensus 134 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~------~~~l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH------AEVLHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH------TTTTTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhh------HHHhhcCCccEEEEECceecCCh
Confidence 8862 3344444443322222222222211 12367888888765421 12223446899999999999753
Q ss_pred CCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccC-----------------------------------
Q 004900 174 GHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQ----------------------------------- 218 (724)
Q Consensus 174 G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~----------------------------------- 218 (724)
. ...+..+ ..+.....++||||+..+...++...+.+-
T Consensus 208 ~---~~~~~al----~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 208 D---NQTYLAL----NSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp C---HHHHHHH----HHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred h---hHHHHHH----HhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 3 1222223 233456789999998765432222211110
Q ss_pred -----------CCeEeec-----cCCCCceEEEEEecc------------------------------------------
Q 004900 219 -----------NPLVLKS-----SFNRPNLFYEVRYKD------------------------------------------ 240 (724)
Q Consensus 219 -----------~~~vi~~-----s~~r~ni~~~v~~~~------------------------------------------ 240 (724)
.+.+++. ....|.....+....
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c 360 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLC 360 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHh
Confidence 0001100 001121111111100
Q ss_pred -----------------------------------chhhHHHHHHHHH---HhcCCceEEEEecccccHHHHHHHHHhCC
Q 004900 241 -----------------------------------LLDDAYADLCSVL---KANGDTCAIVYCLERTTCDELSAYLSAGG 282 (724)
Q Consensus 241 -----------------------------------~~~~k~~~L~~lL---k~~~~~~~IIf~~sr~~~e~La~~L~~~g 282 (724)
....++..+..++ +...+.++||||+++..++.++..|...|
T Consensus 361 ~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g 440 (644)
T 1z3i_X 361 NHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRR 440 (644)
T ss_dssp HCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCC
Confidence 0011222333333 33456799999999999999999999999
Q ss_pred CceeeecCCCCHHHHHHHHHHhhcCCc---eEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEE
Q 004900 283 ISCAAYHAGLNDKARSSVLDDWISSRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSL 359 (724)
Q Consensus 283 i~v~~~H~~l~~~eR~~vl~~F~~g~~---~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~i 359 (724)
+.+..+||+++.++|..++++|++|.. .+||+|.++|+|||++++++||+||+|+++..|.|++||++|.|+...+.
T Consensus 441 ~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~ 520 (644)
T 1z3i_X 441 YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCY 520 (644)
T ss_dssp CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSSTTCCSCEE
T ss_pred CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhcCCCCceE
Confidence 999999999999999999999999875 48999999999999999999999999999999999999999999987765
Q ss_pred EE
Q 004900 360 LY 361 (724)
Q Consensus 360 l~ 361 (724)
+|
T Consensus 521 v~ 522 (644)
T 1z3i_X 521 IY 522 (644)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 56
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=6.7e-28 Score=276.47 Aligned_cols=324 Identities=19% Similarity=0.180 Sum_probs=230.6
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH---
Q 004900 27 VKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE--- 100 (724)
Q Consensus 27 ~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~--- 100 (724)
..+.++.+|+. +++.|.-+.-.+..|+ |+.|.||.|||+++.+|++. .+..+.||+|+..|+.+-.+.+..
T Consensus 65 REAa~R~lg~r-~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~l~~ 141 (822)
T 3jux_A 65 REAARRTLGMR-PFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGPVYL 141 (822)
T ss_dssp HHHHHHHTSCC-CCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCC-CcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHHHHH
Confidence 44567778886 7799999888888887 99999999999999999974 577899999999999987777655
Q ss_pred -cCCceeeeccc--------------------------------------------------chHHHHHHHHhhhhcCCC
Q 004900 101 -KGIAGEFLSST--------------------------------------------------QTMQVKTKIYEDLDSGKP 129 (724)
Q Consensus 101 -~gi~~~~l~s~--------------------------------------------------~~~~~~~~i~~~l~~~~~ 129 (724)
+|+.+.++.+. +....+...+
T Consensus 142 ~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY-------- 213 (822)
T 3jux_A 142 FLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY-------- 213 (822)
T ss_dssp HTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--------
T ss_pred HhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--------
Confidence 68888877761 1122222222
Q ss_pred CccEEEeCcccccChhHHHHH---HhhhhcCCccEEEEccccccccC---------C--CCChHHHHH------------
Q 004900 130 SLRLLYVTPELTATPGFMSKL---KKIHSRGLLNLVAIDEAHCISSW---------G--HDFRPSYRK------------ 183 (724)
Q Consensus 130 ~~~il~~TPE~i~T~~~l~~L---~~~~~~~~l~lIVIDEAH~l~~~---------G--~dFrp~y~~------------ 183 (724)
..+|.|+|.--+.-......+ ....-++.+.+.||||+|.++=. | .+-...|..
T Consensus 214 ~~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~ 293 (822)
T 3jux_A 214 LCDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDK 293 (822)
T ss_dssp HSSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTT
T ss_pred cCCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCC
Confidence 157888876544322222211 01112345788999999877410 0 000000100
Q ss_pred --------------------HH----------------------HHHhh--C------------------------C---
Q 004900 184 --------------------LS----------------------SLRNY--L------------------------P--- 192 (724)
Q Consensus 184 --------------------L~----------------------~l~~~--~------------------------p--- 192 (724)
+. .++.. + +
T Consensus 294 dy~vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr 373 (822)
T 3jux_A 294 DFTVDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRR 373 (822)
T ss_dssp TEEECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCC
T ss_pred cEEEEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCc
Confidence 00 01110 0 0
Q ss_pred -----------------------------------CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEE-
Q 004900 193 -----------------------------------DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEV- 236 (724)
Q Consensus 193 -----------------------------------~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v- 236 (724)
-..+.+||+|+..+. ..+.+..++ .++..+.++|+.....
T Consensus 374 ~s~GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~-~Ef~~iY~l---~vv~IPtnkp~~R~d~~ 449 (822)
T 3jux_A 374 YSGGLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEE-SEFVQVYGM---EVVVIPTHKPMIRKDHD 449 (822)
T ss_dssp CGGGHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGH-HHHHHHSCC---CEEECCCSSCCCCEECC
T ss_pred CchHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHH-HHHHHHhCC---eEEEECCCCCcceeecC
Confidence 011889999998754 556665554 3555567777655433
Q ss_pred -EeccchhhHHHHHHHHHHhc--CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEE
Q 004900 237 -RYKDLLDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV 313 (724)
Q Consensus 237 -~~~~~~~~k~~~L~~lLk~~--~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLV 313 (724)
.......+++..+...+... .+.++||||+|++.++.|+..|...|+++..+||+..+.++..+.+.++.| .|+|
T Consensus 450 d~vy~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtV 527 (822)
T 3jux_A 450 DLVFRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTI 527 (822)
T ss_dssp CEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEE
T ss_pred cEEEecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEE
Confidence 11223467788888777652 467899999999999999999999999999999997666666666666666 5999
Q ss_pred EccccccccCCC--------CcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccH
Q 004900 314 ATVAFGMGIDRK--------DVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDR 367 (724)
Q Consensus 314 AT~a~g~GIDip--------~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~ 367 (724)
||+++|||+|++ ++.+||++++|.|...|.||+||+||.|.+|.+++|++.+|.
T Consensus 528 ATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~ 589 (822)
T 3jux_A 528 ATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDD 589 (822)
T ss_dssp EETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSH
T ss_pred EcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHH
Confidence 999999999998 556999999999999999999999999999999999998883
No 57
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.6e-28 Score=288.33 Aligned_cols=311 Identities=19% Similarity=0.172 Sum_probs=218.4
Q ss_pred CCCCHHHHHHHHHHH----cCCcEEEEcCCCchHHHHHHHHHH------cCCCeEEEEcCcHHHHHHHHHHHHHcC--Cc
Q 004900 37 AQFRDKQLDAIQAVL----SGRDCFCLMPTGGGKSMCYQIPAL------AKPGIVLVVSPLIALMENQVIGLKEKG--IA 104 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail----~g~dvlv~apTGsGKTl~~~lpal------~~~~~vLVlsPl~aL~~qqv~~l~~~g--i~ 104 (724)
..+||+|.+++..++ .++++|+..+||.|||+..+..+. ...+.+|||+| .+|+.||.+++.++. +.
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 369999999998776 788999999999999987654332 23678999999 688899999999864 44
Q ss_pred eeeecccchHHHHHHHHhhhh------cCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCCh
Q 004900 105 GEFLSSTQTMQVKTKIYEDLD------SGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFR 178 (724)
Q Consensus 105 ~~~l~s~~~~~~~~~i~~~l~------~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFr 178 (724)
+...++............... ......+|+++|++++.... ..+ ....+++|||||||++...+.
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~--~~l----~~~~w~~vIvDEaH~lkn~~s--- 384 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDR--AEL----GSIKWQFMAVDEAHRLKNAES--- 384 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTH--HHH----HTSEEEEEEETTGGGGCCSSS---
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhH--HHH----hcCCcceeehhhhhhhcCchh---
Confidence 555554443322221111110 12235789999999875421 112 223489999999999965332
Q ss_pred HHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEe-------------------------------ecc-
Q 004900 179 PSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL-------------------------------KSS- 226 (724)
Q Consensus 179 p~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi-------------------------------~~s- 226 (724)
.+......+.....++||||+..+...++...+.+-.|..+ +..
T Consensus 385 ----~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 385 ----SLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp ----HHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred ----HHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 22333344455568999999976655555555443322211 100
Q ss_pred ----CCCCceEEEEEeccc-------------------------------------------------------------
Q 004900 227 ----FNRPNLFYEVRYKDL------------------------------------------------------------- 241 (724)
Q Consensus 227 ----~~r~ni~~~v~~~~~------------------------------------------------------------- 241 (724)
...|.....+.....
T Consensus 461 ~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~ 540 (800)
T 3mwy_W 461 KDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDG 540 (800)
T ss_dssp GGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC---
T ss_pred HhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccc
Confidence 011111111111000
Q ss_pred -------------hhhHHHHHHHHHHhc--CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhc
Q 004900 242 -------------LDDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWIS 306 (724)
Q Consensus 242 -------------~~~k~~~L~~lLk~~--~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~ 306 (724)
...++..|..+|... .+.++||||..+..++.|...|...|+.+..+||+++..+|..++++|++
T Consensus 541 ~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 541 KMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp -CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred cccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 012344455555442 45789999999999999999999999999999999999999999999998
Q ss_pred CCc---eEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEE
Q 004900 307 SRK---QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (724)
Q Consensus 307 g~~---~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~ 361 (724)
+.. .+|++|.++|.|||++.+++||+||+|+|+..+.|++||++|.|+...+.+|
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~k~V~Vy 678 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQKNHVMVY 678 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCCSCEEEE
T ss_pred CCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCCceEEEE
Confidence 655 4999999999999999999999999999999999999999999998766554
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.95 E-value=3.1e-26 Score=268.56 Aligned_cols=206 Identities=21% Similarity=0.272 Sum_probs=149.2
Q ss_pred cEEEEcccccc-ccCCCCChHHHHHHHHHHhhC-------------------CCCCEEEEeecCChhhHHHHHHhhccCC
Q 004900 160 NLVAIDEAHCI-SSWGHDFRPSYRKLSSLRNYL-------------------PDVPILALTATAAPKVQKDVMESLCLQN 219 (724)
Q Consensus 160 ~lIVIDEAH~l-~~~G~dFrp~y~~L~~l~~~~-------------------p~~pil~LSAT~~~~v~~di~~~l~l~~ 219 (724)
.+|||||+|++ .+|+..|+..+..+..+...- ...+++++|||+++..... .-.+..
T Consensus 327 ~llVlDEah~~~~~~~~~~~~~~~~~~~l~~~G~~lp~~l~~~~l~~~e~~~~~~q~i~~SAT~~~~~~~~---~~~~~~ 403 (664)
T 1c4o_A 327 FLVFLDESHVTVPQLQGMYRGDYARKKTLVDYGFRLPSALDNRPLRFEEFLERVSQVVFVSATPGPFELAH---SGRVVE 403 (664)
T ss_dssp CEEEEETHHHHHHHHHHHHHHHHHHHHHHHHTTSSCGGGGGSSCCCHHHHHHTCSEEEEEESSCCHHHHHH---CSEEEE
T ss_pred cEEEEecccccHHHHHHHHHHHHHHHHHHHHccccchhhhhcCcccHHHHHhhcCCEEEEecCCCHHHHHh---hhCeee
Confidence 57899999986 456655555554444433210 1467899999998754321 000000
Q ss_pred CeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHH
Q 004900 220 PLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKAR 297 (724)
Q Consensus 220 ~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR 297 (724)
..+...+...|. ..+... ......+...+.. ..+.++||||+|+..++.|+..|.+.|+.+..+||++++.+|
T Consensus 404 ~~~r~~~l~~p~--i~v~~~---~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R 478 (664)
T 1c4o_A 404 QIIRPTGLLDPL--VRVKPT---ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKR 478 (664)
T ss_dssp ECSCTTCCCCCE--EEEECS---TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHH
T ss_pred eeeccCCCCCCe--EEEecc---cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHH
Confidence 000000112222 222221 1223333333322 145689999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCC-----CCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHH
Q 004900 298 SSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI-----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEF 372 (724)
Q Consensus 298 ~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~-----P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~ 372 (724)
..+++.|.+|+++|||||+++++|+|+|+|++||+++. |.|..+|+||+|||||.| .|.+++|++..+....+.
T Consensus 479 ~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~~~~~ 557 (664)
T 1c4o_A 479 QALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEAMQRA 557 (664)
T ss_dssp HHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHHHHHH
T ss_pred HHHHHHhhcCCceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHHHHHH
Confidence 99999999999999999999999999999999999997 899999999999999995 899999999887766555
Q ss_pred HH
Q 004900 373 IL 374 (724)
Q Consensus 373 i~ 374 (724)
+.
T Consensus 558 i~ 559 (664)
T 1c4o_A 558 IE 559 (664)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 59
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.93 E-value=3.4e-25 Score=227.66 Aligned_cols=195 Identities=18% Similarity=0.202 Sum_probs=152.3
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc-----------CCCeE
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-----------KPGIV 81 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~-----------~~~~v 81 (724)
+...|.++++.+.+.+.|++ +||..|+|+|.++|+.++.|+|+++++|||+|||++|++|++. .++.+
T Consensus 27 ~~~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~ 105 (242)
T 3fe2_A 27 PVLNFYEANFPANVMDVIAR-QNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPIC 105 (242)
T ss_dssp CCSSTTTTTCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSE
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEE
Confidence 45668889999999999998 7999999999999999999999999999999999999999984 25679
Q ss_pred EEEcCcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcC
Q 004900 82 LVVSPLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRG 157 (724)
Q Consensus 82 LVlsPl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~ 157 (724)
|||+|+++|+.|+.+.++.+ ++....+.++........... . ..+|+++||+.+.... ........
T Consensus 106 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~---~~~I~v~Tp~~l~~~l----~~~~~~~~ 175 (242)
T 3fe2_A 106 LVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R---GVEICIATPGRLIDFL----ECGKTNLR 175 (242)
T ss_dssp EEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H---CCSEEEECHHHHHHHH----HHTSCCCT
T ss_pred EEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C---CCCEEEECHHHHHHHH----HcCCCCcc
Confidence 99999999999998888774 677777777665554433222 2 2678888888763211 01223456
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEee
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~ 224 (724)
.+++|||||||++.+|| |++.+..+ +....++.++++||||+++.+...+...+ .+|..+.
T Consensus 176 ~~~~lViDEah~l~~~~--~~~~~~~i--~~~~~~~~q~~~~SAT~~~~~~~~~~~~l--~~~~~i~ 236 (242)
T 3fe2_A 176 RTTYLVLDEADRMLDMG--FEPQIRKI--VDQIRPDRQTLMWSATWPKEVRQLAEDFL--KDYIHIN 236 (242)
T ss_dssp TCCEEEETTHHHHHHTT--CHHHHHHH--HTTSCSSCEEEEEESCCCHHHHHHHHHHC--SSCEEEE
T ss_pred cccEEEEeCHHHHhhhC--cHHHHHHH--HHhCCccceEEEEEeecCHHHHHHHHHHC--CCCEEEE
Confidence 68999999999999998 77777665 22333578999999999999887666554 4666554
No 60
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.93 E-value=4.1e-25 Score=268.51 Aligned_cols=314 Identities=12% Similarity=0.073 Sum_probs=201.1
Q ss_pred CCchHHHHHHHHHHcC------CCCCCHHHHHHHHHHHc--------------CCcEEEEcCCCchHHHHHHHHHHc--C
Q 004900 20 LHEKEALVKLLRWHFG------HAQFRDKQLDAIQAVLS--------------GRDCFCLMPTGGGKSMCYQIPALA--K 77 (724)
Q Consensus 20 ~~~~~~l~~~L~~~fG------~~~lr~~Q~eaI~ail~--------------g~dvlv~apTGsGKTl~~~lpal~--~ 77 (724)
+...+.+++.+..+.- ...+||+|.+|++.++. +++++++++||+|||+++ ++++. .
T Consensus 247 ~~~~~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~ 325 (1038)
T 2w00_A 247 CFQKHTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLAT 325 (1038)
T ss_dssp TTSHHHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHT
T ss_pred hhchHHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHH
Confidence 4445677777777431 23599999999999875 368999999999999987 33321 1
Q ss_pred ----CCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhh
Q 004900 78 ----PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKI 153 (724)
Q Consensus 78 ----~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~ 153 (724)
..++|||+|+++|+.|+...+..++... +.++.+..... ..+.. ...+|+++||..+... +......
T Consensus 326 ~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~--v~~~~s~~~l~---~~L~~--~~~~IiVtTiqkl~~~--l~~~~~~ 396 (1038)
T 2w00_A 326 ELDFIDKVFFVVDRKDLDYQTMKEYQRFSPDS--VNGSENTAGLK---RNLDK--DDNKIIVTTIQKLNNL--MKAESDL 396 (1038)
T ss_dssp TCTTCCEEEEEECGGGCCHHHHHHHHTTSTTC--SSSSCCCHHHH---HHHHC--SSCCEEEEEHHHHHHH--HHHCCCC
T ss_pred hcCCCceEEEEeCcHHHHHHHHHHHHHhcccc--cccccCHHHHH---HHhcC--CCCCEEEEEHHHHHHH--Hhcccch
Confidence 3589999999999999999999876432 12222222211 12222 2367888888765421 1100001
Q ss_pred hhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhH----HHHHHhhccCCCeEee-----
Q 004900 154 HSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ----KDVMESLCLQNPLVLK----- 224 (724)
Q Consensus 154 ~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~----~di~~~l~l~~~~vi~----- 224 (724)
.......+|||||||++.. | .....++..+|+.++++||||+..... ......+|- .+..
T Consensus 397 ~~~~~~~lvIiDEAHrs~~-~-------~~~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~---~i~~Y~l~~ 465 (1038)
T 2w00_A 397 PVYNQQVVFIFDECHRSQF-G-------EAQKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGR---ELHSYVITD 465 (1038)
T ss_dssp GGGGSCEEEEEESCCTTHH-H-------HHHHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCS---EEEEECHHH
T ss_pred hccccccEEEEEccchhcc-h-------HHHHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCC---eeEeecHHH
Confidence 1223478999999999652 2 123456677899999999999975321 111222211 1110
Q ss_pred ---ccCCCCce-EEEE-Eec--------c-------------chhhHHHHHHH-HHH---hc--------CCceEEEEec
Q 004900 225 ---SSFNRPNL-FYEV-RYK--------D-------------LLDDAYADLCS-VLK---AN--------GDTCAIVYCL 266 (724)
Q Consensus 225 ---~s~~r~ni-~~~v-~~~--------~-------------~~~~k~~~L~~-lLk---~~--------~~~~~IIf~~ 266 (724)
.++..|.. .|.. ... + ..+.....+.. ++. .. .+.++||||+
T Consensus 466 AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~ 545 (1038)
T 2w00_A 466 AIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVS 545 (1038)
T ss_dssp HHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEES
T ss_pred HHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEEC
Confidence 01111110 0000 000 0 01122223222 222 11 2357999999
Q ss_pred ccccHHHHHHHHHhCC------------Cce-eeecCC----------C----------CH-------------------
Q 004900 267 ERTTCDELSAYLSAGG------------ISC-AAYHAG----------L----------ND------------------- 294 (724)
Q Consensus 267 sr~~~e~La~~L~~~g------------i~v-~~~H~~----------l----------~~------------------- 294 (724)
|+..|..++..|.+.+ +.+ ..+|++ + ++
T Consensus 546 S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~ 625 (1038)
T 2w00_A 546 SVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKT 625 (1038)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcc
Confidence 9999999999997754 454 456653 2 22
Q ss_pred ----------HHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCC
Q 004900 295 ----------KARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLP 355 (724)
Q Consensus 295 ----------~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~ 355 (724)
..|..++++|++|+++|||+|+.+.+|+|+|.+ .|+++|.|.+...|+|++||++|.+..
T Consensus 626 ~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 626 NFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCT
T ss_pred cccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCC
Confidence 147889999999999999999999999999999 788999999999999999999998753
No 61
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.93 E-value=2.1e-24 Score=253.06 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=109.2
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccccCCCCcceEEeeCC-
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGIDRKDVRLVCHFNI- 335 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GIDip~V~~VI~~d~- 335 (724)
.+.++||||+|+..++.++..|.+.|+.+..+||++++.+|..+++.|.+|+++|||||+++++|+|+|+|++||+++.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~~d~d 523 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDAD 523 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEETTTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEEeCcc
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ----CCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHH
Q 004900 336 ----PKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFIL 374 (724)
Q Consensus 336 ----P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~ 374 (724)
|.+..+|+||+|||||. ..|.|++|++..+....+.+.
T Consensus 524 ~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~~~~i~ 565 (661)
T 2d7d_A 524 KEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSMEIAIN 565 (661)
T ss_dssp CCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHHHHHHH
T ss_pred cccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHHHHHHH
Confidence 99999999999999998 689999999988766555443
No 62
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.93 E-value=6.3e-25 Score=212.61 Aligned_cols=151 Identities=21% Similarity=0.372 Sum_probs=136.6
Q ss_pred cCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhh
Q 004900 226 SFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWI 305 (724)
Q Consensus 226 s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~ 305 (724)
+...+++...+.... ..+++..|.+++....+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|.
T Consensus 4 ~~~~~~i~~~~~~~~-~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 4 GLTTRNIEHAVIQVR-EENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp --CCCCEEEEEEECC-GGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred ccCcccceEEEEECC-hHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 345667766655544 3678899999998887889999999999999999999999999999999999999999999999
Q ss_pred cCCceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 306 SSRKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 306 ~g~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
+|+++|||||+++++|+|+|++++||+|++|.++..|+||+||+||.|++|.+++|+.+.|...++.+.+..
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~ 154 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYI 154 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999988888776643
No 63
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.93 E-value=5.1e-25 Score=223.87 Aligned_cols=192 Identities=20% Similarity=0.277 Sum_probs=143.1
Q ss_pred ccCCC-CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------------CCCeE
Q 004900 15 QKNKP-LHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------------KPGIV 81 (724)
Q Consensus 15 ~~~~~-~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------------~~~~v 81 (724)
..|.+ +.+.+++.+.|.+ +||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .+..+
T Consensus 19 ~~f~~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~ 97 (228)
T 3iuy_A 19 CRFKDAFQQYPDLLKSIIR-VGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGM 97 (228)
T ss_dssp CSHHHHHTTCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSE
T ss_pred hhHhhhhccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcE
Confidence 34455 6778899999988 6999999999999999999999999999999999999999875 46789
Q ss_pred EEEcCcHHHHHHHHHHHHHc---CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCC
Q 004900 82 LVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGL 158 (724)
Q Consensus 82 LVlsPl~aL~~qqv~~l~~~---gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~ 158 (724)
|||+|+++|+.|+.+.++.+ ++....+.++......... +.. ..+|+++||+.+.... .........
T Consensus 98 lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~iiv~Tp~~l~~~~----~~~~~~~~~ 167 (228)
T 3iuy_A 98 LVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---ISK---GVDIIIATPGRLNDLQ----MNNSVNLRS 167 (228)
T ss_dssp EEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HHS---CCSEEEECHHHHHHHH----HTTCCCCTT
T ss_pred EEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hcC---CCCEEEECHHHHHHHH----HcCCcCccc
Confidence 99999999999999999986 4566666555443322211 121 3678888888764311 112223556
Q ss_pred ccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHHHHhhccCCCeEe
Q 004900 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (724)
Q Consensus 159 l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi 223 (724)
+++|||||||++.+|| |++.+..+ +....++.++++||||+++.+...+... +.+|..+
T Consensus 168 ~~~lViDEah~~~~~~--~~~~~~~i--~~~~~~~~~~l~~SAT~~~~~~~~~~~~--l~~p~~i 226 (228)
T 3iuy_A 168 ITYLVIDEADKMLDME--FEPQIRKI--LLDVRPDRQTVMTSATWPDTVRQLALSY--LKDPMIV 226 (228)
T ss_dssp CCEEEECCHHHHHHTT--CHHHHHHH--HHHSCSSCEEEEEESCCCHHHHHHHHTT--CSSCEEE
T ss_pred ceEEEEECHHHHhccc--hHHHHHHH--HHhCCcCCeEEEEEeeCCHHHHHHHHHH--CCCCEEE
Confidence 8999999999999987 77777766 3333458899999999999987755443 4466543
No 64
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.92 E-value=1.3e-24 Score=219.71 Aligned_cols=199 Identities=16% Similarity=0.196 Sum_probs=147.0
Q ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCcH
Q 004900 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (724)
Q Consensus 15 ~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl~ 88 (724)
..|.++++++.+.+.|++ +|+..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. +..+|||+|++
T Consensus 4 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKT-LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp CCGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 347788999999999988 79999999999999999999999999999999999999999853 56899999999
Q ss_pred HHHHHHHHHHHHc--------CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCcc
Q 004900 89 ALMENQVIGLKEK--------GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN 160 (724)
Q Consensus 89 aL~~qqv~~l~~~--------gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~ 160 (724)
+|+.|+.+.++.+ ++.+..+.++..... .........+|+++||+.+.... . ........++
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------~~~~~~~~~~Iiv~Tp~~l~~~l--~--~~~~~~~~~~ 152 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK------ALEKLNVQPHIVIGTPGRINDFI--R--EQALDVHTAH 152 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHH------TTCCCSSCCSEEEECHHHHHHHH--H--TTCCCGGGCC
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHH------HHHHcCCCCCEEEeCHHHHHHHH--H--cCCCCcCcce
Confidence 9999999998875 455555555543322 11111224678888888764211 0 1112334589
Q ss_pred EEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCc
Q 004900 161 LVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPN 231 (724)
Q Consensus 161 lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~n 231 (724)
+|||||||++.+|| |.. .+..+...++ +.++++||||+++.+...+... +.+|..+....++++
T Consensus 153 ~lViDEah~~~~~~--~~~---~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~--~~~p~~~~~~~~~~~ 217 (219)
T 1q0u_A 153 ILVVDEADLMLDMG--FIT---DVDQIAARMPKDLQMLVFSATIPEKLKPFLKKY--MENPTFVHVLEHHHH 217 (219)
T ss_dssp EEEECSHHHHHHTT--CHH---HHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHH--CSSCEEEECC-----
T ss_pred EEEEcCchHHhhhC--hHH---HHHHHHHhCCcccEEEEEecCCCHHHHHHHHHH--cCCCeEEEeeccccc
Confidence 99999999999988 444 4445555554 6889999999999887755544 567877766555543
No 65
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.92 E-value=2.8e-24 Score=219.55 Aligned_cols=192 Identities=21% Similarity=0.288 Sum_probs=146.2
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc----------CCCeEE
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVL 82 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~----------~~~~vL 82 (724)
....|.++++.+.+.+.|+. +|+..|+++|.++++.++.|+|+++.+|||+|||++|++|++. .+..+|
T Consensus 23 ~~~~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 23 EITRFSDFPLSKKTLKGLQE-AQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GCSBGGGSCCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred ccCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 34568889999999999988 7999999999999999999999999999999999999999874 256899
Q ss_pred EEcCcHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh--hhhc
Q 004900 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (724)
Q Consensus 83 VlsPl~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~--~~~~ 156 (724)
||+|+++|+.|+.+.++.++ +.+..+.++.......... ...+|+++||+.+.. .+.. ....
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~iiv~Tp~~l~~-----~l~~~~~~~~ 169 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-------NNINILVCTPGRLLQ-----HMDETVSFHA 169 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-------TTCSEEEECHHHHHH-----HHHHCSSCCC
T ss_pred EEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-------CCCCEEEECHHHHHH-----HHHhcCCccc
Confidence 99999999999999999865 5566666555443322222 136888888887632 1222 1234
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEee
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~ 224 (724)
..+++|||||||++.+|| |...+ ..+...++ +.++++||||+++.+.... ...+.+|..+.
T Consensus 170 ~~~~~lViDEah~~~~~~--~~~~~---~~i~~~~~~~~~~l~~SAT~~~~~~~~~--~~~~~~p~~i~ 231 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMG--FADTM---NAVIENLPKKRQTLLFSATQTKSVKDLA--RLSLKNPEYVW 231 (236)
T ss_dssp TTCCEEEETTHHHHHHTT--THHHH---HHHHHTSCTTSEEEEEESSCCHHHHHHH--HHSCSSCEEEE
T ss_pred ccccEEEEeChHHHhcCC--cHHHH---HHHHHhCCCCCeEEEEEeeCCHHHHHHH--HHhCCCCEEEE
Confidence 568999999999999988 55544 44455554 6789999999999887633 33456776554
No 66
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.9e-24 Score=211.49 Aligned_cols=148 Identities=21% Similarity=0.336 Sum_probs=131.2
Q ss_pred CceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCc
Q 004900 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (724)
Q Consensus 230 ~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~ 309 (724)
+++...+...+....++..|.++++.....++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|++
T Consensus 6 ~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~ 85 (175)
T 2rb4_A 6 NNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKE 85 (175)
T ss_dssp CCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSC
T ss_pred CCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 45655555555545689999999988878899999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccccccccCCCCcceEEeeCCC------CCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 310 QVVVATVAFGMGIDRKDVRLVCHFNIP------KSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 310 ~VLVAT~a~g~GIDip~V~~VI~~d~P------~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
+|||||+++++|+|+|++++||+||+| .+...|+||+||+||.|+.|.+++|+...+...+..+.+..
T Consensus 86 ~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~ 159 (175)
T 2rb4_A 86 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHF 159 (175)
T ss_dssp SEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHH
T ss_pred eEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHh
Confidence 999999999999999999999999999 99999999999999999999999999999988877776654
No 67
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.92 E-value=3.1e-24 Score=223.79 Aligned_cols=183 Identities=23% Similarity=0.310 Sum_probs=137.9
Q ss_pred ccCCCCC--chHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc----------CCCeEE
Q 004900 15 QKNKPLH--EKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----------KPGIVL 82 (724)
Q Consensus 15 ~~~~~~~--~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~----------~~~~vL 82 (724)
..|.++. +.+.+.+.|+. +||..|+++|.++++.++.|+|++++||||+|||++|++|++. .+..+|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKE-MGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHH-TTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEE
Confidence 3455555 78999999998 8999999999999999999999999999999999999999984 367899
Q ss_pred EEcCcHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh--hhhc
Q 004900 83 VVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSR 156 (724)
Q Consensus 83 VlsPl~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~--~~~~ 156 (724)
||+|+++|+.|+++.++.++ +....+.++........ .+.. ..+|+++||+.+.. .+.. ....
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~---~~~Iiv~Tp~~l~~-----~~~~~~~~~~ 199 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQ---KLGN---GINIIVATPGRLLD-----HMQNTPGFMY 199 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHH---HHHH---CCSEEEECHHHHHH-----HHHHCTTCCC
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHH---HhcC---CCCEEEEcHHHHHH-----HHHccCCccc
Confidence 99999999999999999853 44455555544333222 2222 26788888886532 1111 1234
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHh
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMES 214 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~ 214 (724)
..+++|||||||++.+|| |++.+..+ ...++ ++++++||||+++.+.......
T Consensus 200 ~~l~~lViDEah~l~~~~--~~~~l~~i---~~~~~~~~q~l~~SAT~~~~v~~~~~~~ 253 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVG--FEEELKQI---IKLLPTRRQTMLFSATQTRKVEDLARIS 253 (262)
T ss_dssp TTCCEEEECSHHHHHHTT--CHHHHHHH---HHHSCSSSEEEEECSSCCHHHHHHHHHH
T ss_pred ccCCEEEEcChHHHhhhh--HHHHHHHH---HHhCCCCCeEEEEEecCCHHHHHHHHHH
Confidence 568999999999999998 77776655 33444 6889999999999987755443
No 68
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.92 E-value=3.8e-24 Score=213.41 Aligned_cols=189 Identities=22% Similarity=0.224 Sum_probs=144.9
Q ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCcH
Q 004900 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (724)
Q Consensus 15 ~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl~ 88 (724)
..|+++++++++.+.|++ +||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++.. +.++||++|++
T Consensus 3 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFE-MGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp SSGGGSCCCHHHHHHHHT-TTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 457889999999999988 89999999999999999999999999999999999999999853 45799999999
Q ss_pred HHHHHHHHHHHHc-----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH-hhhhcCCccEE
Q 004900 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-KIHSRGLLNLV 162 (724)
Q Consensus 89 aL~~qqv~~l~~~-----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~-~~~~~~~l~lI 162 (724)
+|+.|+.+.+..+ ++.+..+.++........ .+ ....+|+++||+.+.. .+. .......+++|
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~---~~~~~i~v~T~~~l~~-----~~~~~~~~~~~~~~l 150 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL---DDTVHVVIATPGRILD-----LIKKGVAKVDHVQMI 150 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT---TSCCSEEEECHHHHHH-----HHHTTCSCCTTCCEE
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc---CCCCCEEEeCHHHHHH-----HHHcCCcCcccCCEE
Confidence 9999999999875 455555655554433221 11 2247899999987632 111 12234568999
Q ss_pred EEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeE
Q 004900 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLV 222 (724)
Q Consensus 163 VIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~v 222 (724)
||||||++.+++ |+..+.. +...++ +.++++||||+++.+...+...+ .+|..
T Consensus 151 ViDEah~~~~~~--~~~~l~~---i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l--~~p~~ 204 (206)
T 1vec_A 151 VLDEADKLLSQD--FVQIMED---IILTLPKNRQILLYSATFPLSVQKFMNSHL--EKPYE 204 (206)
T ss_dssp EEETHHHHTSTT--THHHHHH---HHHHSCTTCEEEEEESCCCHHHHHHHHHHC--SSCEE
T ss_pred EEEChHHhHhhC--cHHHHHH---HHHhCCccceEEEEEeeCCHHHHHHHHHHc--CCCeE
Confidence 999999998865 6655544 444555 78999999999998877666654 45544
No 69
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.92 E-value=5.6e-24 Score=220.13 Aligned_cols=192 Identities=23% Similarity=0.295 Sum_probs=149.2
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCc
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPL 87 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl 87 (724)
...|.++++.+.+.+.|+. +||..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. ..++|||+|+
T Consensus 42 ~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQ-LGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred cCCHHHcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 5668889999999999988 89999999999999999999999999999999999999998752 4679999999
Q ss_pred HHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh--hhhcCCccE
Q 004900 88 IALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK--IHSRGLLNL 161 (724)
Q Consensus 88 ~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~--~~~~~~l~l 161 (724)
++|+.|+.+.++.+ ++.+..+.++.......... . ...+|+++||+.+.. .+.. ......+++
T Consensus 121 r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~I~v~Tp~~l~~-----~l~~~~~~~l~~~~~ 189 (249)
T 3ber_A 121 RELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---A---KKPHIIIATPGRLID-----HLENTKGFNLRALKY 189 (249)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---H---TCCSEEEECHHHHHH-----HHHHSTTCCCTTCCE
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---c---CCCCEEEECHHHHHH-----HHHcCCCcCccccCE
Confidence 99999999998875 67777777665543322221 1 136888888886532 1221 223556899
Q ss_pred EEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEee
Q 004900 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (724)
Q Consensus 162 IVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~ 224 (724)
|||||||++.+|+ |++.+..+ ...++ +.++++||||+++.+...+... +.+|..+.
T Consensus 190 lViDEah~l~~~~--~~~~l~~i---~~~~~~~~~~l~~SAT~~~~v~~~~~~~--l~~p~~i~ 246 (249)
T 3ber_A 190 LVMDEADRILNMD--FETEVDKI---LKVIPRDRKTFLFSATMTKKVQKLQRAA--LKNPVKCA 246 (249)
T ss_dssp EEECSHHHHHHTT--CHHHHHHH---HHSSCSSSEEEEEESSCCHHHHHHHHHH--CSSCEEEE
T ss_pred EEEcChhhhhccC--hHHHHHHH---HHhCCCCCeEEEEeccCCHHHHHHHHHH--CCCCEEEE
Confidence 9999999999986 77766555 33444 7899999999999987744443 45776553
No 70
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.91 E-value=2.7e-24 Score=217.42 Aligned_cols=137 Identities=27% Similarity=0.404 Sum_probs=127.7
Q ss_pred hhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccc
Q 004900 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (724)
Q Consensus 242 ~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~G 321 (724)
...++..|.++++...+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 94 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARG 94 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCS
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcC
Confidence 36788999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhcc
Q 004900 322 IDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (724)
Q Consensus 322 IDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~ 378 (724)
||+|+|++||+|++|.+...|+||+||+||.|++|.|++|+++.|...++.+.+...
T Consensus 95 idi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~ 151 (212)
T 3eaq_A 95 LDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 151 (212)
T ss_dssp SSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHS
T ss_pred CCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999888888776543
No 71
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.91 E-value=3e-24 Score=208.13 Aligned_cols=135 Identities=21% Similarity=0.373 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccccc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GI 322 (724)
..++..|.++++..++.++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++|+
T Consensus 15 ~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~ 94 (165)
T 1fuk_A 15 EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGI 94 (165)
T ss_dssp GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTC
T ss_pred hhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCC
Confidence 34888999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhc
Q 004900 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKN 377 (724)
Q Consensus 323 Dip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~ 377 (724)
|+|++++||+||+|.++..|+||+||+||.|+.|.|++|+...|...+..+.+..
T Consensus 95 d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~ 149 (165)
T 1fuk_A 95 DVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFY 149 (165)
T ss_dssp CCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHS
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988877766543
No 72
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=5.6e-24 Score=208.06 Aligned_cols=134 Identities=18% Similarity=0.364 Sum_probs=124.8
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccccc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GI 322 (724)
.+++..|.++++...+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+++|||||+++++|+
T Consensus 16 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gl 95 (172)
T 1t5i_A 16 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGM 95 (172)
T ss_dssp GGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTC
T ss_pred HHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCc
Confidence 57888999999988888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccc-cHHHHHHHHHh
Q 004900 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILSK 376 (724)
Q Consensus 323 Dip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~-D~~~~~~i~~~ 376 (724)
|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+.+. +...++.+.+.
T Consensus 96 di~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~ 150 (172)
T 1t5i_A 96 DIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDR 150 (172)
T ss_dssp CGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHH
T ss_pred chhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999875 45555655543
No 73
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.91 E-value=9e-24 Score=213.25 Aligned_cols=193 Identities=15% Similarity=0.198 Sum_probs=145.9
Q ss_pred ccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcCcH
Q 004900 15 QKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSPLI 88 (724)
Q Consensus 15 ~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsPl~ 88 (724)
..|+++++++++.+.|+. +||..|+++|.++++.+++|+|+++.+|||+|||++|++|++.. ..++|||+|++
T Consensus 14 ~~f~~~~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 14 SGFRDFLLKPELLRAIVD-CGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CCSTTSCCCHHHHHHHHH-TTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 458899999999999988 79999999999999999999999999999999999999999853 34899999999
Q ss_pred HHHHHHHHHHHHc-----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEE
Q 004900 89 ALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVA 163 (724)
Q Consensus 89 aL~~qqv~~l~~~-----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIV 163 (724)
+|+.|+.+.++++ ++.+..+.++.......... ..+ ..+|+++||+.+..... ........+++||
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~~--~~~i~v~T~~~l~~~~~----~~~~~~~~~~~lV 163 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKN--CPHIVVGTPGRILALAR----NKSLNLKHIKHFI 163 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---HHS--CCSEEEECHHHHHHHHH----TTSSCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH---hcC--CCCEEEeCHHHHHHHHH----hCCCCcccCCEEE
Confidence 9999999999886 67777777766554433222 222 25788888886542110 1122345689999
Q ss_pred EccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEe
Q 004900 164 IDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (724)
Q Consensus 164 IDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi 223 (724)
|||||++.++ +.|+..+ ..+....+ +.++++||||+++.+...+.. .+.+|..+
T Consensus 164 iDEah~~~~~-~~~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~--~~~~p~~i 218 (220)
T 1t6n_A 164 LDECDKMLEQ-LDMRRDV---QEIFRMTPHEKQVMMFSATLSKEIRPVCRK--FMQDPMEI 218 (220)
T ss_dssp EESHHHHHSS-HHHHHHH---HHHHHTSCSSSEEEEEESCCCTTTHHHHHT--TCSSCEEE
T ss_pred EcCHHHHhcc-cCcHHHH---HHHHHhCCCcCeEEEEEeecCHHHHHHHHH--HcCCCeEE
Confidence 9999999874 1255444 34444444 789999999999988764433 34566544
No 74
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.91 E-value=9.9e-24 Score=213.34 Aligned_cols=194 Identities=19% Similarity=0.229 Sum_probs=143.4
Q ss_pred cccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEc
Q 004900 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVS 85 (724)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLVls 85 (724)
.....|.++++.+.+.+.|+. +||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .++++||++
T Consensus 11 ~~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~ 89 (224)
T 1qde_A 11 KVVYKFDDMELDENLLRGVFG-YGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLA 89 (224)
T ss_dssp CCCCCGGGGTCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEEC
T ss_pred cccCChhhcCCCHHHHHHHHH-CCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEE
Confidence 335668889999999999987 7999999999999999999999999999999999999999984 356899999
Q ss_pred CcHHHHHHHHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccE
Q 004900 86 PLIALMENQVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (724)
Q Consensus 86 Pl~aL~~qqv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~l 161 (724)
|+++|+.|+.+.++.+ ++.+..+.++........ .+ ...+|+++||+.+..... ........+++
T Consensus 90 Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~----~~~~iiv~Tp~~l~~~~~----~~~~~~~~~~~ 158 (224)
T 1qde_A 90 PTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE---GL----RDAQIVVGTPGRVFDNIQ----RRRFRTDKIKM 158 (224)
T ss_dssp SSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------C----TTCSEEEECHHHHHHHHH----TTSSCCTTCCE
T ss_pred CCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHh---cC----CCCCEEEECHHHHHHHHH----hCCcchhhCcE
Confidence 9999999999999885 455555555443322211 11 126788888887642110 12233456899
Q ss_pred EEEccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEee
Q 004900 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (724)
Q Consensus 162 IVIDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~ 224 (724)
|||||||++.+|+ |+..+..+ ...+ ++.++++||||+++.+...+... +.+|..+.
T Consensus 159 iViDEah~~~~~~--~~~~l~~i---~~~~~~~~~~i~lSAT~~~~~~~~~~~~--~~~p~~i~ 215 (224)
T 1qde_A 159 FILDEADEMLSSG--FKEQIYQI---FTLLPPTTQVVLLSATMPNDVLEVTTKF--MRNPVRIL 215 (224)
T ss_dssp EEEETHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEEESSCCHHHHHHHHHH--CSSCEEEC
T ss_pred EEEcChhHHhhhh--hHHHHHHH---HHhCCccCeEEEEEeecCHHHHHHHHHH--CCCCEEEE
Confidence 9999999999987 66555444 3333 47889999999999987755554 45666543
No 75
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.91 E-value=7.3e-24 Score=216.08 Aligned_cols=194 Identities=17% Similarity=0.199 Sum_probs=146.2
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC------CCeEEEEcC
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK------PGIVLVVSP 86 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~------~~~vLVlsP 86 (724)
....|.++++.+.+.+.|++ +||..|+++|.++++.++.|+|+++.+|||+|||++|++|++.. +..+|||+|
T Consensus 22 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 100 (230)
T 2oxc_A 22 EPADFESLLLSRPVLEGLRA-AGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAP 100 (230)
T ss_dssp --CCGGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CCCCHhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeC
Confidence 34568889999999999987 79999999999999999999999999999999999999998742 468999999
Q ss_pred cHHHHHHHHHHHHHc-----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccE
Q 004900 87 LIALMENQVIGLKEK-----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNL 161 (724)
Q Consensus 87 l~aL~~qqv~~l~~~-----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~l 161 (724)
+++|+.|+.+.++.+ ++.+..+.++.......... ...+|+++||+.+..... ........+++
T Consensus 101 t~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~Iiv~Tp~~l~~~~~----~~~~~~~~~~~ 169 (230)
T 2oxc_A 101 TREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-------KKCHIAVGSPGRIKQLIE----LDYLNPGSIRL 169 (230)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-------TSCSEEEECHHHHHHHHH----TTSSCGGGCCE
T ss_pred CHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-------cCCCEEEECHHHHHHHHh----cCCcccccCCE
Confidence 999999999999986 45566666665544332221 136888888886542110 11122345889
Q ss_pred EEEccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEee
Q 004900 162 VAIDEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (724)
Q Consensus 162 IVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~ 224 (724)
|||||||++.+||. |++.+..+ ...++ +.++++||||+++.+...+... +.+|..+.
T Consensus 170 lViDEah~~~~~~~-~~~~~~~i---~~~~~~~~~~l~lSAT~~~~~~~~~~~~--~~~p~~i~ 227 (230)
T 2oxc_A 170 FILDEADKLLEEGS-FQEQINWI---YSSLPASKQMLAVSATYPEFLANALTKY--MRDPTFVR 227 (230)
T ss_dssp EEESSHHHHHSTTS-SHHHHHHH---HHHSCSSCEEEEEESCCCHHHHHHHTTT--CSSCEEEC
T ss_pred EEeCCchHhhcCcc-hHHHHHHH---HHhCCCCCeEEEEEeccCHHHHHHHHHH--cCCCeEEE
Confidence 99999999999873 66665544 44455 7789999999998876644333 45666543
No 76
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.91 E-value=1.8e-23 Score=208.38 Aligned_cols=190 Identities=18% Similarity=0.195 Sum_probs=143.5
Q ss_pred cCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---------CCCeEEEEcC
Q 004900 16 KNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---------KPGIVLVVSP 86 (724)
Q Consensus 16 ~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---------~~~~vLVlsP 86 (724)
.|.++++++.+.+.|++ +|+..|+|+|.++++.+++|+++++.+|||+|||++|++|++. .++++||++|
T Consensus 2 ~f~~~~l~~~l~~~l~~-~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P 80 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHG-RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTP 80 (207)
T ss_dssp CGGGSCCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECS
T ss_pred ChhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEEC
Confidence 36778899999999988 7999999999999999999999999999999999999999874 2567999999
Q ss_pred cHHHHHHHHHHHHHcC--CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEE
Q 004900 87 LIALMENQVIGLKEKG--IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAI 164 (724)
Q Consensus 87 l~aL~~qqv~~l~~~g--i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVI 164 (724)
+++|+.|+.+.++.+. +....+.++........... . ..+++++||+.+..... ........+++|||
T Consensus 81 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~i~v~T~~~l~~~~~----~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 81 TRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL---R---GADAVVATPGRALDYLR----QGVLDLSRVEVAVL 150 (207)
T ss_dssp SHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---H---CCSEEEECHHHHHHHHH----HTSSCCTTCSEEEE
T ss_pred CHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---C---CCCEEEECHHHHHHHHH----cCCcchhhceEEEE
Confidence 9999999999999874 45555555544333222211 1 26788888886542111 12233556899999
Q ss_pred ccccccccCCCCChHHHHHHHHHHhhCC-CCCEEEEeecCChhhHHHHHHhhccCCCeEe
Q 004900 165 DEAHCISSWGHDFRPSYRKLSSLRNYLP-DVPILALTATAAPKVQKDVMESLCLQNPLVL 223 (724)
Q Consensus 165 DEAH~l~~~G~dFrp~y~~L~~l~~~~p-~~pil~LSAT~~~~v~~di~~~l~l~~~~vi 223 (724)
||||++.+++ |+..+..+ ....+ +.+++++|||+++.+...+... +.+|.++
T Consensus 151 DEah~~~~~~--~~~~~~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~--~~~p~~i 203 (207)
T 2gxq_A 151 DEADEMLSMG--FEEEVEAL---LSATPPSRQTLLFSATLPSWAKRLAERY--MKNPVLI 203 (207)
T ss_dssp ESHHHHHHTT--CHHHHHHH---HHTSCTTSEEEEECSSCCHHHHHHHHHH--CSSCEEE
T ss_pred EChhHhhccc--hHHHHHHH---HHhCCccCeEEEEEEecCHHHHHHHHHH--cCCCeEE
Confidence 9999999877 66555444 44444 7889999999999876644443 4566654
No 77
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.91 E-value=8.3e-24 Score=209.41 Aligned_cols=147 Identities=22% Similarity=0.392 Sum_probs=118.9
Q ss_pred CCceEEEEEeccchhhHHHHHHHHHHhc-CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcC
Q 004900 229 RPNLFYEVRYKDLLDDAYADLCSVLKAN-GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISS 307 (724)
Q Consensus 229 r~ni~~~v~~~~~~~~k~~~L~~lLk~~-~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g 307 (724)
.+++...+.... ..+++..|.++++.. .+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|
T Consensus 17 ~~~i~q~~~~v~-~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g 95 (185)
T 2jgn_A 17 SENITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG 95 (185)
T ss_dssp CTTEEEEEEECC-GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT
T ss_pred CCCceEEEEEeC-cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 456766655544 357888899998876 467899999999999999999999999999999999999999999999999
Q ss_pred CceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHh
Q 004900 308 RKQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSK 376 (724)
Q Consensus 308 ~~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~ 376 (724)
+++|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|++|+...|...++.+++.
T Consensus 96 ~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~ 164 (185)
T 2jgn_A 96 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDL 164 (185)
T ss_dssp SSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHH
T ss_pred CCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887776666553
No 78
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.90 E-value=2e-23 Score=213.89 Aligned_cols=195 Identities=18% Similarity=0.235 Sum_probs=141.8
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc------CCCeEEEEcC
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA------KPGIVLVVSP 86 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~------~~~~vLVlsP 86 (724)
....|+++++.+.+.+.|.. +||..|+++|.++++.++.|+|+++.+|||+|||++|++|++. .+.++|||+|
T Consensus 28 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 28 IVDNFDDMNLKESLLRGIYA-YGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-HTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred ccCChhhcCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 35668889999999999987 7999999999999999999999999999999999999999985 3568999999
Q ss_pred cHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEE
Q 004900 87 LIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLV 162 (724)
Q Consensus 87 l~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lI 162 (724)
+++|+.|+.+.++.++ +.+....++..... ....+..+ ..+|+++||+.+.... .........+++|
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~l~~~--~~~Ilv~Tp~~l~~~l----~~~~~~~~~~~~l 177 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYMGATCHACIGGTNVRN---EMQKLQAE--APHIVVGTPGRVFDML----NRRYLSPKWIKMF 177 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECC----------------C--CCSEEEECHHHHHHHH----HTTSSCSTTCCEE
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH---HHHHHhcC--CCCEEEECHHHHHHHH----HhCCcCcccCcEE
Confidence 9999999999998864 34444444332221 11122222 2678888887653211 0112334568999
Q ss_pred EEccccccccCCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEee
Q 004900 163 AIDEAHCISSWGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (724)
Q Consensus 163 VIDEAH~l~~~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~ 224 (724)
||||||++.+|+ |+..+..+ ...+ ++.++++||||+++.+...+...+ .+|..+.
T Consensus 178 ViDEah~~~~~~--~~~~l~~i---~~~~~~~~~~i~~SAT~~~~~~~~~~~~l--~~p~~i~ 233 (237)
T 3bor_A 178 VLDEADEMLSRG--FKDQIYEI---FQKLNTSIQVVLLSATMPTDVLEVTKKFM--RDPIRIL 233 (237)
T ss_dssp EEESHHHHHHTT--CHHHHHHH---HHHSCTTCEEEEECSSCCHHHHHHHHHHC--SSCEEEC
T ss_pred EECCchHhhccC--cHHHHHHH---HHhCCCCCeEEEEEEecCHHHHHHHHHHC--CCCEEEE
Confidence 999999999988 55554443 3333 478999999999999877665544 4666553
No 79
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.90 E-value=1e-23 Score=216.58 Aligned_cols=190 Identities=22% Similarity=0.232 Sum_probs=138.0
Q ss_pred CchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc-------CCCeEEEEcCcHHHHHH
Q 004900 21 HEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA-------KPGIVLVVSPLIALMEN 93 (724)
Q Consensus 21 ~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~-------~~~~vLVlsPl~aL~~q 93 (724)
.+.+.+.+.|.+ +||..|+|+|.++++.+++|+|+++.+|||+|||++|++|++. .+..+|||+|+++|+.|
T Consensus 35 ~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q 113 (245)
T 3dkp_A 35 KINSRLLQNILD-AGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQ 113 (245)
T ss_dssp CCCHHHHHHHHH-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHH
T ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHH
Confidence 678889999988 6999999999999999999999999999999999999999974 34579999999999999
Q ss_pred HHHHHHHc----CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHh---hhhcCCccEEEEcc
Q 004900 94 QVIGLKEK----GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKK---IHSRGLLNLVAIDE 166 (724)
Q Consensus 94 qv~~l~~~----gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~---~~~~~~l~lIVIDE 166 (724)
+.+.++.+ ++....+.++... .. ..........+|+++||+.+.. .+.. ......+++|||||
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~I~v~Tp~~l~~-----~l~~~~~~~~~~~~~~lViDE 183 (245)
T 3dkp_A 114 IHRELIKISEGTGFRIHMIHKAAVA---AK--KFGPKSSKKFDILVTTPNRLIY-----LLKQDPPGIDLASVEWLVVDE 183 (245)
T ss_dssp HHHHHHHHTTTSCCCEECCCHHHHH---HT--TTSTTSCCCCCEEEECHHHHHH-----HHHSSSCSCCCTTCCEEEESS
T ss_pred HHHHHHHHhcccCceEEEEecCccH---HH--HhhhhhcCCCCEEEECHHHHHH-----HHHhCCCCcccccCcEEEEeC
Confidence 99999986 3333333222111 10 1111112346888888876532 1111 12345689999999
Q ss_pred ccccccCC-CCChHHHHHHHHHHhh-CCCCCEEEEeecCChhhHHHHHHhhccCCCeEeec
Q 004900 167 AHCISSWG-HDFRPSYRKLSSLRNY-LPDVPILALTATAAPKVQKDVMESLCLQNPLVLKS 225 (724)
Q Consensus 167 AH~l~~~G-~dFrp~y~~L~~l~~~-~p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~~ 225 (724)
||++.+|+ ..|+..+..+ +... .++.++++||||+++.+...+... +.+|..+..
T Consensus 184 ah~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~SAT~~~~v~~~~~~~--l~~p~~i~~ 240 (245)
T 3dkp_A 184 SDKLFEDGKTGFRDQLASI--FLACTSHKVRRAMFSATFAYDVEQWCKLN--LDNVISVSI 240 (245)
T ss_dssp HHHHHHHC--CHHHHHHHH--HHHCCCTTCEEEEEESSCCHHHHHHHHHH--SSSCEEEEE
T ss_pred hHHhcccccccHHHHHHHH--HHhcCCCCcEEEEEeccCCHHHHHHHHHh--CCCCEEEEe
Confidence 99999987 3466666555 2222 247899999999999887744443 457766543
No 80
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.90 E-value=7.9e-24 Score=218.61 Aligned_cols=196 Identities=19% Similarity=0.225 Sum_probs=146.3
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC---------------
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK--------------- 77 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~--------------- 77 (724)
+...|.++++++.+.+.|+. +||..|+++|.++++.++.|+|+++.+|||+|||++|++|++..
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~-~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~ 99 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILL-ASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTA 99 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTT-TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCB
T ss_pred ccCCHhhCCCCHHHHHHHHH-CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccC
Confidence 44568888899999999987 79999999999999999999999999999999999999998742
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHcC----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH-h
Q 004900 78 PGIVLVVSPLIALMENQVIGLKEKG----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK-K 152 (724)
Q Consensus 78 ~~~vLVlsPl~aL~~qqv~~l~~~g----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~-~ 152 (724)
++.+|||+|+++|+.|+.+.++.++ +....+.++......... +. ...+|+++||+.+.. .+. .
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~---~~~~Ivv~Tp~~l~~-----~l~~~ 168 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE---VQ---MGCHLLVATPGRLVD-----FIEKN 168 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH---HS---SCCSEEEECHHHHHH-----HHHTT
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---hC---CCCCEEEECHHHHHH-----HHHcC
Confidence 2589999999999999999988853 455555555544332221 11 236888888886532 111 1
Q ss_pred hhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCC--CCCEEEEeecCChhhHHHHHHhhccCCCeEee
Q 004900 153 IHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP--DVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (724)
Q Consensus 153 ~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p--~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~ 224 (724)
......+++|||||||++.+|| |++.+..+........ +.++++||||+++.+...+...+ .+|..+.
T Consensus 169 ~~~~~~~~~lViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l--~~~~~i~ 238 (253)
T 1wrb_A 169 KISLEFCKYIVLDEADRMLDMG--FEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFL--YNYIFMT 238 (253)
T ss_dssp SBCCTTCCEEEEETHHHHHHTT--CHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHC--SSCEEEE
T ss_pred CCChhhCCEEEEeCHHHHHhCc--hHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHc--CCCEEEE
Confidence 2234568999999999999988 7777766533222222 67899999999998877555543 4666554
No 81
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.90 E-value=3.7e-23 Score=205.91 Aligned_cols=145 Identities=19% Similarity=0.361 Sum_probs=124.1
Q ss_pred CCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCC
Q 004900 229 RPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSR 308 (724)
Q Consensus 229 r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~ 308 (724)
.+++...+.... ...++..|.+++...+ .++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|+
T Consensus 27 ~~~i~q~~~~~~-~~~K~~~L~~~l~~~~-~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~ 104 (191)
T 2p6n_A 27 SLDVIQEVEYVK-EEAKMVYLLECLQKTP-PPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK 104 (191)
T ss_dssp -CCSEEEEEECC-GGGHHHHHHHHHTTSC-SCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CcCceEEEEEcC-hHHHHHHHHHHHHhCC-CCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC
Confidence 345555555443 3578888888887654 57999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccc-cHHHHHHHHH
Q 004900 309 KQVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMD-DRRRMEFILS 375 (724)
Q Consensus 309 ~~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~-D~~~~~~i~~ 375 (724)
++|||||+++++|+|+|++++||+||+|.++..|+||+||+||.|+.|.+++|+... |...++.+.+
T Consensus 105 ~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~~~~l~~ 172 (191)
T 2p6n_A 105 KDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESVLMDLKA 172 (191)
T ss_dssp CSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876 5555544433
No 82
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.90 E-value=3.7e-23 Score=220.05 Aligned_cols=190 Identities=18% Similarity=0.223 Sum_probs=141.0
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHHHHHHcC------CCeEEEE
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAK------PGIVLVV 84 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~lpal~~------~~~vLVl 84 (724)
....|.++.+++.+.+.|.. +||..|+++|.++|+.++.| +|+++++|||+|||++|++|++.+ .+.+|||
T Consensus 90 ~~~~f~~l~l~~~l~~~l~~-~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil 168 (300)
T 3fmo_B 90 SVKSFEELRLKPQLLQGVYA-MGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCL 168 (300)
T ss_dssp CCCCSGGGTCCHHHHHHHHH-TTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEE
T ss_pred CcCCHhhcCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEE
Confidence 45678889999999999998 79999999999999999987 999999999999999999999852 4479999
Q ss_pred cCcHHHHHHHHHHHHHcC-----CceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHH--hhhhcC
Q 004900 85 SPLIALMENQVIGLKEKG-----IAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRG 157 (724)
Q Consensus 85 sPl~aL~~qqv~~l~~~g-----i~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~--~~~~~~ 157 (724)
+||++|+.|+.+.++.++ +......++..... ......+|+++||+.+.. .+. ......
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~IlV~TP~~l~~-----~l~~~~~~~l~ 234 (300)
T 3fmo_B 169 SPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER---------GQKISEQIVIGTPGTVLD-----WCSKLKFIDPK 234 (300)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT---------TCCCCCSEEEECHHHHHH-----HHTTTCCCCGG
T ss_pred cCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh---------hhcCCCCEEEECHHHHHH-----HHHhcCCCChh
Confidence 999999999999988864 33333333322111 011235687777775421 111 122345
Q ss_pred CccEEEEcccccccc-CCCCChHHHHHHHHHHhhC-CCCCEEEEeecCChhhHHHHHHhhccCCCeEee
Q 004900 158 LLNLVAIDEAHCISS-WGHDFRPSYRKLSSLRNYL-PDVPILALTATAAPKVQKDVMESLCLQNPLVLK 224 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~-~G~dFrp~y~~L~~l~~~~-p~~pil~LSAT~~~~v~~di~~~l~l~~~~vi~ 224 (724)
.+++|||||||++.+ +| |...+..+ ...+ +++++++||||+++.+....... +.+|.++.
T Consensus 235 ~l~~lVlDEad~l~~~~~--~~~~~~~i---~~~~~~~~q~i~~SAT~~~~v~~~a~~~--l~~p~~i~ 296 (300)
T 3fmo_B 235 KIKVFVLDEADVMIATQG--HQDQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQKV--VPDPNVIK 296 (300)
T ss_dssp GCSEEEETTHHHHHHSTT--HHHHHHHH---HTTSCTTCEEEEEESCCCHHHHHHHHHH--SSSCEEEE
T ss_pred hceEEEEeCHHHHhhccC--cHHHHHHH---HHhCCCCCEEEEEeccCCHHHHHHHHHH--CCCCeEEE
Confidence 689999999999987 55 55555444 3444 47899999999999988754443 56776654
No 83
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.89 E-value=1.1e-22 Score=216.35 Aligned_cols=136 Identities=26% Similarity=0.396 Sum_probs=124.3
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccccc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMGI 322 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~GI 322 (724)
..++..|.++++...+.++||||++++.++.++..|...|+.+..+||+|++.+|..+++.|++|+.+|||||+++++||
T Consensus 13 ~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gi 92 (300)
T 3i32_A 13 RGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGL 92 (300)
T ss_dssp SSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCST
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCc
Confidence 56888999999887788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHHhcc
Q 004900 323 DRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILSKNQ 378 (724)
Q Consensus 323 Dip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~~~~ 378 (724)
|+|+|++||+|++|.+...|+||+|||||.|++|.|++|+++.|...++.+.+...
T Consensus 93 di~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~ 148 (300)
T 3i32_A 93 DIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVG 148 (300)
T ss_dssp TCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHT
T ss_pred cccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999988888776543
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.82 E-value=6.7e-25 Score=213.88 Aligned_cols=146 Identities=23% Similarity=0.299 Sum_probs=129.2
Q ss_pred CceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCc
Q 004900 230 PNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRK 309 (724)
Q Consensus 230 ~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~ 309 (724)
+++.+.+........++..|.++++...+.++||||+++..++.++..|...|+.+..+||+|++.+|..+++.|++|++
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~~ 81 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGRV 81 (170)
Confidence 34444444333335677788888887777889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEccccccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEEEccccHHHHHHHHH
Q 004900 310 QVVVATVAFGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLYYGMDDRRRMEFILS 375 (724)
Q Consensus 310 ~VLVAT~a~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~~~~~D~~~~~~i~~ 375 (724)
+|||||+++++|+|+|++++||+|++|.++..|+||+||+||.|+.|.+++++...|...++.+.+
T Consensus 82 ~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~ 147 (170)
T 2yjt_D 82 NVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGR 147 (170)
Confidence 999999999999999999999999999999999999999999999999999999888776665554
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.86 E-value=1.3e-19 Score=211.55 Aligned_cols=135 Identities=19% Similarity=0.141 Sum_probs=103.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc---CCCeEEEEcCcHHHHHHHHHHHHH--
Q 004900 26 LVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA---KPGIVLVVSPLIALMENQVIGLKE-- 100 (724)
Q Consensus 26 l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~---~~~~vLVlsPl~aL~~qqv~~l~~-- 100 (724)
+..+.++.+|+ .++++|..+++.++.|+ ++.|.||+|||++|.+|++. .+..++||+||+.|+.|....+..
T Consensus 68 vREAs~R~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 68 TRESAKRYLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp HHHHHHHHTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 44566778999 79999999999999998 99999999999999999953 466899999999999998887766
Q ss_pred --cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHH---HhhhhcC---CccEEEEccccccc
Q 004900 101 --KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKL---KKIHSRG---LLNLVAIDEAHCIS 171 (724)
Q Consensus 101 --~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L---~~~~~~~---~l~lIVIDEAH~l~ 171 (724)
+|+.+..+.++.....+...+ .++|+|+||-.+.-......+ ....... .+.++||||+|.++
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~~ay--------~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERRKAY--------LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHHHHH--------TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HhcCCeEEEEeCCCCHHHHHHHc--------CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 588888888887765544433 267888888765311111111 0012344 68999999999986
No 86
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.85 E-value=2.4e-20 Score=213.92 Aligned_cols=315 Identities=14% Similarity=0.150 Sum_probs=171.5
Q ss_pred HcCCCCCCHHHHHHHHH----HHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeee
Q 004900 33 HFGHAQFRDKQLDAIQA----VLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFL 108 (724)
Q Consensus 33 ~fG~~~lr~~Q~eaI~a----il~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l 108 (724)
..|| ++||+|.+++.+ +..|+++++.||||+|||++|++|++...++++|++||++|+.|+++.+..++++...+
T Consensus 3 ~~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l 81 (540)
T 2vl7_A 3 VLKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFL 81 (540)
T ss_dssp -------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC
T ss_pred CCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEe
Confidence 3577 799999998755 45789999999999999999999999999999999999999999999999888777665
Q ss_pred cccchHHHH-----------------------------HHHHhh------------hhcCCCCccEEEeCcccccChhHH
Q 004900 109 SSTQTMQVK-----------------------------TKIYED------------LDSGKPSLRLLYVTPELTATPGFM 147 (724)
Q Consensus 109 ~s~~~~~~~-----------------------------~~i~~~------------l~~~~~~~~il~~TPE~i~T~~~l 147 (724)
.+....-.. ..++.. ........+|+++++..+..+...
T Consensus 82 ~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~ 161 (540)
T 2vl7_A 82 IGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIR 161 (540)
T ss_dssp ---------------------------------------------------------CTTGGGCSEEEEETHHHHSHHHH
T ss_pred cCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHH
Confidence 543210000 000000 011112358888888887776544
Q ss_pred HHHHh---hhhcCCccEEEEccccccccCCCCC----------hHHHH--------------------------------
Q 004900 148 SKLKK---IHSRGLLNLVAIDEAHCISSWGHDF----------RPSYR-------------------------------- 182 (724)
Q Consensus 148 ~~L~~---~~~~~~l~lIVIDEAH~l~~~G~dF----------rp~y~-------------------------------- 182 (724)
..+.. ........+|||||||.+.. ..++ ...+.
T Consensus 162 ~~~~~~~~~~~~~~~~~vIiDEAHnl~~-a~~~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~ 240 (540)
T 2vl7_A 162 NSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKWFTRKISRKMLERALKEIEIVERLNRIDAKKVKDYINLLIDYMSKLIK 240 (540)
T ss_dssp HHHSCSSTTSCCGGGEEEEETTGGGGGG-GGGGGCEEECHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTSCC
T ss_pred HhhCcccccccCcCCCEEEEEccccHHH-HHHHhccccCHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhc
Confidence 33220 00122367999999999943 1000 00000
Q ss_pred -------------------HHHHHHh------------------------------------hCC-------------CC
Q 004900 183 -------------------KLSSLRN------------------------------------YLP-------------DV 194 (724)
Q Consensus 183 -------------------~L~~l~~------------------------------------~~p-------------~~ 194 (724)
.+..+.. ..| ..
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~P~~~~~~l~~~~~~~~ 320 (540)
T 2vl7_A 241 DGRCHELSLMPLPDRETNGELIVVTRAYLNIDEGPVKKSSLKSLLKFVEMKGDLYNCNGSLVKVPSDVNQLIEDALNVKT 320 (540)
T ss_dssp SSSEEEESCCCCCCHHHHHHHHHHHHHHHTTCCSSSCCCHHHHHHHHHHSCCEEEEETTEEEEECSCHHHHHHHHTCCSS
T ss_pred cccccchhhcccccHHHHHHHHHHHHHHHHhhccCccHHHHHHHHHHHHhCCCEEEECCeEEEehHHHHHHHHHhcCccC
Confidence 0100000 000 01
Q ss_pred CEEEEeecCChhh--HHHHHHhhccCCCeEeeccCCCCceEEEEEe---ccch----hhHHHHHHHHHHhcCCceEEEEe
Q 004900 195 PILALTATAAPKV--QKDVMESLCLQNPLVLKSSFNRPNLFYEVRY---KDLL----DDAYADLCSVLKANGDTCAIVYC 265 (724)
Q Consensus 195 pil~LSAT~~~~v--~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~---~~~~----~~k~~~L~~lLk~~~~~~~IIf~ 265 (724)
.+|++|||+++.. ..++ ...+.. .+....+...... -+.. ......|.+++.. .++.+|||+
T Consensus 321 ~~IltSATL~p~~~~~~~f--~~~~~~------~~g~~~~~~~~~l~s~f~~r~~~~~~~~~~l~~~~~~-~~g~~lvff 391 (540)
T 2vl7_A 321 FKVLMSGTLPESLTLTNSY--KIVVNE------SYGRGEYYYCPNVTSELRKRNSNIPIYSILLKRIYEN-SSKSVLVFF 391 (540)
T ss_dssp CEEEEESSCCTTCCCTTEE--EEECCC------C-CCCEEEECTTCCCCGGGHHHHHHHHHHHHHHHHHT-CSSEEEEEE
T ss_pred CeEEEcccCCCCcccchhc--CCchhh------eecCCcceeccccCCCcccccCHHHHHHHHHHHHHHh-CCCCEEEEe
Confidence 1366666666510 0000 000000 0000000000000 0000 1223334444444 345799999
Q ss_pred cccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEE--EccccccccCCCC----cceEEeeCCCC--
Q 004900 266 LERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVV--ATVAFGMGIDRKD----VRLVCHFNIPK-- 337 (724)
Q Consensus 266 ~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLV--AT~a~g~GIDip~----V~~VI~~d~P~-- 337 (724)
+|....+.+++.|.. +. ...++.. ..|..+++.|+++. .||+ +|..|.+|||+|+ +++||.+++|.
T Consensus 392 ~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~ 465 (540)
T 2vl7_A 392 PSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPN 465 (540)
T ss_dssp SCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCC
T ss_pred CCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCC
Confidence 999999999998865 23 3455543 46788999999865 4666 8999999999997 89999999983
Q ss_pred --CH--------------------------HHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 338 --SM--------------------------EAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 338 --S~--------------------------~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
++ ..+.|.+||+-|....--++++++.
T Consensus 466 ~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~ 520 (540)
T 2vl7_A 466 VSDDMVRKRIERLSKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDS 520 (540)
T ss_dssp TTSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESG
T ss_pred CCCHHHHHHHHHHHHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEcc
Confidence 11 2356999999998654445555543
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.79 E-value=1e-17 Score=192.60 Aligned_cols=315 Identities=15% Similarity=0.122 Sum_probs=196.7
Q ss_pred CCCCCCHHHHHHHHHH----HcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHc----CCcee
Q 004900 35 GHAQFRDKQLDAIQAV----LSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK----GIAGE 106 (724)
Q Consensus 35 G~~~lr~~Q~eaI~ai----l~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~----gi~~~ 106 (724)
|| ++||+|.+++.++ ..|+++++.||||+|||++|++|++...+++||++||++|+.|..+.+..+ ++++.
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 45 5899999987654 478999999999999999999999998899999999999999998888876 56666
Q ss_pred eecccchH----------------------------------HHHHHH-----------HhhhhcCCCCccEEEeCcccc
Q 004900 107 FLSSTQTM----------------------------------QVKTKI-----------YEDLDSGKPSLRLLYVTPELT 141 (724)
Q Consensus 107 ~l~s~~~~----------------------------------~~~~~i-----------~~~l~~~~~~~~il~~TPE~i 141 (724)
.+.+.... ...... +..........+|+++++..+
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 55442211 000000 000011112468888988887
Q ss_pred cChhHHHHHHhhhhcCCccEEEEccccccccCCCCC--------------------------------------------
Q 004900 142 ATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDF-------------------------------------------- 177 (724)
Q Consensus 142 ~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dF-------------------------------------------- 177 (724)
..+.....+ .......+|||||||.+.+ ..++
T Consensus 160 ~~~~~~~~~---~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~~ 235 (551)
T 3crv_A 160 FIDRYREFI---DIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKYI 235 (551)
T ss_dssp HCHHHHTTS---CCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSCE
T ss_pred cCHHHHHhc---CCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 766422211 1112467899999999876 2100
Q ss_pred ---------hHHHH-------------------------HHHHHH----------------------------hhCCC--
Q 004900 178 ---------RPSYR-------------------------KLSSLR----------------------------NYLPD-- 193 (724)
Q Consensus 178 ---------rp~y~-------------------------~L~~l~----------------------------~~~p~-- 193 (724)
..... .+..+. ..+.+
T Consensus 236 ~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~~ 315 (551)
T 3crv_A 236 KVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDNE 315 (551)
T ss_dssp ECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCTT
T ss_pred ccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhccC
Confidence 00000 010000 01122
Q ss_pred CCEEEEeecCChhhHHHHHHhhccCCCeE-------eeccCCCCceEEEEEe-cc-----chhhHHHH----HHHHHHhc
Q 004900 194 VPILALTATAAPKVQKDVMESLCLQNPLV-------LKSSFNRPNLFYEVRY-KD-----LLDDAYAD----LCSVLKAN 256 (724)
Q Consensus 194 ~pil~LSAT~~~~v~~di~~~l~l~~~~v-------i~~s~~r~ni~~~v~~-~~-----~~~~k~~~----L~~lLk~~ 256 (724)
.++|++|||+++ ...+...+|+..+.. +..++ ..+....+.. .+ .....+.. +.+++...
T Consensus 316 ~svIltSaTL~~--~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 316 LSIILMSGTLPP--REYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp CEEEEEESSCCC--HHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEeeCCCc--HHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHhC
Confidence 689999999998 466788888863332 12234 3333322221 11 00122333 33444443
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEc--cccccccCCC-----Ccce
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVAT--VAFGMGIDRK-----DVRL 329 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT--~a~g~GIDip-----~V~~ 329 (724)
+ +.++||++|....+.+++. .+..+..=..+++. ..+++.|..+.-.||+|| ..|.+|||+| ..+.
T Consensus 393 ~-g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~~---~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~ 465 (551)
T 3crv_A 393 K-ANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSSV---EDLYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISD 465 (551)
T ss_dssp S-SEEEEEESCHHHHHHHHTT---CCSSEEECCSSCCH---HHHHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEE
T ss_pred C-CCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCCH---HHHHHHHHhcCCeEEEEEecceecccccccccCCcceeE
Confidence 3 5799999999999999873 34444333335553 456777854344799998 6999999999 3789
Q ss_pred EEeeCCCC---------------------CH---------HHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 330 VCHFNIPK---------------------SM---------EAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 330 VI~~d~P~---------------------S~---------~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
||..++|- .. ....|.+||+-|....--++++++.
T Consensus 466 viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 530 (551)
T 3crv_A 466 VVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDK 530 (551)
T ss_dssp EEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESG
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeeh
Confidence 99888773 11 1235899999998655445555543
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.74 E-value=3.4e-18 Score=170.71 Aligned_cols=161 Identities=22% Similarity=0.233 Sum_probs=99.0
Q ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcC---------CCeEEEEcCcHHHHHH-HHHHHHHc--
Q 004900 34 FGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAK---------PGIVLVVSPLIALMEN-QVIGLKEK-- 101 (724)
Q Consensus 34 fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~---------~~~vLVlsPl~aL~~q-qv~~l~~~-- 101 (724)
.+...|+++|.++++.++.++++++.+|||+|||++|+++++.. .+++||++|+++|+.| +.+.+..+
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 45567999999999999999999999999999999999988742 6789999999999999 55666664
Q ss_pred -CCceeeecccchHHHHH-HHHhhhhcCCCCccEEEeCcccccChhHHHHHH--hhhhcCCccEEEEccccccccCCCCC
Q 004900 102 -GIAGEFLSSTQTMQVKT-KIYEDLDSGKPSLRLLYVTPELTATPGFMSKLK--KIHSRGLLNLVAIDEAHCISSWGHDF 177 (724)
Q Consensus 102 -gi~~~~l~s~~~~~~~~-~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~--~~~~~~~l~lIVIDEAH~l~~~G~dF 177 (724)
++.+..+.++....... .... ..+|+++||+.+.......... .......+++|||||||++...+. +
T Consensus 109 ~~~~v~~~~g~~~~~~~~~~~~~-------~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~-~ 180 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLKISFPEVVK-------SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAV-Y 180 (216)
T ss_dssp TTSCEEECCC---CCCCHHHHHH-------HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------C-H
T ss_pred cCceEEEEeCCcccchhHHhhcc-------CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCc-H
Confidence 45555555443221111 1111 2678888888754211100000 002234589999999999975432 2
Q ss_pred hHHHHHHHHH--Hhh---------CCCCCEEEEeec
Q 004900 178 RPSYRKLSSL--RNY---------LPDVPILALTAT 202 (724)
Q Consensus 178 rp~y~~L~~l--~~~---------~p~~pil~LSAT 202 (724)
+..+..+... ... .++.++++||||
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 181 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 2222221111 111 167889999998
No 89
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.69 E-value=4.5e-17 Score=170.71 Aligned_cols=119 Identities=12% Similarity=0.125 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHhc--CCceEEEEecccccHHHHHHHHHhC-CCceeeecCCCCHHHHHHHHHHhhcC-Cce-EEEEccc
Q 004900 243 DDAYADLCSVLKAN--GDTCAIVYCLERTTCDELSAYLSAG-GISCAAYHAGLNDKARSSVLDDWISS-RKQ-VVVATVA 317 (724)
Q Consensus 243 ~~k~~~L~~lLk~~--~~~~~IIf~~sr~~~e~La~~L~~~-gi~v~~~H~~l~~~eR~~vl~~F~~g-~~~-VLVAT~a 317 (724)
..|+..|.++|... .+.++||||+++..++.++..|... |+.+..+||+++..+|..++++|++| +++ +|++|++
T Consensus 95 s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~ 174 (271)
T 1z5z_A 95 SGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA 174 (271)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCT
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhh
Confidence 46777777777654 5679999999999999999999885 99999999999999999999999998 777 7899999
Q ss_pred cccccCCCCcceEEeeCCCCCHHHHHHHHcccCCCCCCCeEEEE
Q 004900 318 FGMGIDRKDVRLVCHFNIPKSMEAFYQESGRAGRDQLPSKSLLY 361 (724)
Q Consensus 318 ~g~GIDip~V~~VI~~d~P~S~~~yiQr~GRAGRdG~~g~~il~ 361 (724)
+|+|+|++++++||+||+|+++..|.|++||++|.|+.+.+.+|
T Consensus 175 ~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~ 218 (271)
T 1z5z_A 175 GGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 218 (271)
T ss_dssp TCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEE
T ss_pred hcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEE
Confidence 99999999999999999999999999999999999998765443
No 90
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.69 E-value=7.5e-17 Score=169.26 Aligned_cols=145 Identities=17% Similarity=0.105 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc----CCCeEEEEcCcHHHHHHHHHHHHHcCCc----eeeec
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----KPGIVLVVSPLIALMENQVIGLKEKGIA----GEFLS 109 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~----~~~~vLVlsPl~aL~~qqv~~l~~~gi~----~~~l~ 109 (724)
.++++|.++++.++.+++.++++|||+|||+++++++.. ..+.+|||+|+++|+.|+.+.+.+++.. ...+.
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~~~~ 192 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIG 192 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEEECS
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEEEEe
Confidence 799999999999999889999999999999999877653 2459999999999999999999997643 23333
Q ss_pred ccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHh
Q 004900 110 STQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRN 189 (724)
Q Consensus 110 s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~ 189 (724)
++..... ......+|+++||+.+..... .....+++|||||||++.. ..+..+..
T Consensus 193 ~~~~~~~---------~~~~~~~I~v~T~~~l~~~~~-------~~~~~~~~vIiDEaH~~~~---------~~~~~il~ 247 (282)
T 1rif_A 193 GGASKDD---------KYKNDAPVVVGTWQTVVKQPK-------EWFSQFGMMMNDECHLATG---------KSISSIIS 247 (282)
T ss_dssp TTCSSTT---------CCCTTCSEEEECHHHHTTSCG-------GGGGGEEEEEEETGGGCCH---------HHHHHHTT
T ss_pred CCCcchh---------hhccCCcEEEEchHHHHhhHH-------HHHhhCCEEEEECCccCCc---------ccHHHHHH
Confidence 3221110 111347899999987654321 1123489999999999874 23444455
Q ss_pred hC-CCCCEEEEeecCChhh
Q 004900 190 YL-PDVPILALTATAAPKV 207 (724)
Q Consensus 190 ~~-p~~pil~LSAT~~~~v 207 (724)
.+ +..++++||||+....
T Consensus 248 ~~~~~~~~l~lSATp~~~~ 266 (282)
T 1rif_A 248 GLNNCMFKFGLSGSLRDGK 266 (282)
T ss_dssp TCTTCCEEEEECSSCCTTS
T ss_pred HhhcCCeEEEEeCCCCCcc
Confidence 55 5788999999997654
No 91
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.68 E-value=1.5e-15 Score=176.68 Aligned_cols=162 Identities=14% Similarity=0.124 Sum_probs=102.4
Q ss_pred CEEEEeecCChhhHHHHHHhhccCCCeEe--eccCCCCceEEEEEec------cchhhHH----HHHHHHHHhcCCceEE
Q 004900 195 PILALTATAAPKVQKDVMESLCLQNPLVL--KSSFNRPNLFYEVRYK------DLLDDAY----ADLCSVLKANGDTCAI 262 (724)
Q Consensus 195 pil~LSAT~~~~v~~di~~~l~l~~~~vi--~~s~~r~ni~~~v~~~------~~~~~k~----~~L~~lLk~~~~~~~I 262 (724)
.+|++|||+++ ...+...+|+. ...+ ..+++..+....+... ......+ ..|.+++...+ +.++
T Consensus 377 ~~il~SaTL~p--~~~~~~~lGl~-~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~~-g~~l 452 (620)
T 4a15_A 377 KTIHMSGTLDP--FDFYSDITGFE-IPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKVK-KNTI 452 (620)
T ss_dssp EEEEEESSCCS--HHHHHHHHCCC-CCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHHC-SCEE
T ss_pred eEEEEccCCCc--HHHHHHHhCCC-ceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhCC-CCEE
Confidence 46899999998 56778888886 4333 2345555543322211 0111222 33444444444 4599
Q ss_pred EEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc--ccccccCCCC--cceEEeeCCCCC
Q 004900 263 VYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV--AFGMGIDRKD--VRLVCHFNIPKS 338 (724)
Q Consensus 263 If~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~--a~g~GIDip~--V~~VI~~d~P~S 338 (724)
||++|....+.+++.|.. +... ..-+++..+|..++++|. ++..||++|. .|.+|||+|+ .+.||..++|--
T Consensus 453 vlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp 528 (620)
T 4a15_A 453 VYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFP 528 (620)
T ss_dssp EEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCEEEESSCCCC
T ss_pred EEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCC
Confidence 999999999999988862 2222 455666778999999999 8888999975 9999999996 789999998731
Q ss_pred -----------------------------HHHHHHHHcccCCCCCCCeEEEEEcc
Q 004900 339 -----------------------------MEAFYQESGRAGRDQLPSKSLLYYGM 364 (724)
Q Consensus 339 -----------------------------~~~yiQr~GRAGRdG~~g~~il~~~~ 364 (724)
+....|.+||+-|.-..--++++++.
T Consensus 529 ~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~ 583 (620)
T 4a15_A 529 RPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDK 583 (620)
T ss_dssp CCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECG
T ss_pred CCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccccCCCceEEEEEEcc
Confidence 11236999999998665556666654
No 92
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.68 E-value=1.5e-16 Score=163.28 Aligned_cols=139 Identities=23% Similarity=0.178 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCc-eeeecccchHHH
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA-GEFLSSTQTMQV 116 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~-~~~l~s~~~~~~ 116 (724)
.++++|.+++..+++++++++++|||+|||++++.++......+||++|+++|+.|+.+.+..+++. +..+.+...
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~--- 169 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK--- 169 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB---
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC---
Confidence 6899999999999999999999999999999999988888889999999999999999999998887 666655432
Q ss_pred HHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCE
Q 004900 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI 196 (724)
Q Consensus 117 ~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pi 196 (724)
...+|+++|++.+.... ... ...+++|||||||++...+ |. .+...++...+
T Consensus 170 ------------~~~~i~v~T~~~l~~~~-----~~~--~~~~~llIiDEaH~l~~~~------~~---~i~~~~~~~~~ 221 (237)
T 2fz4_A 170 ------------ELKPLTVSTYDSAYVNA-----EKL--GNRFMLLIFDEVHHLPAES------YV---QIAQMSIAPFR 221 (237)
T ss_dssp ------------CCCSEEEEEHHHHHHTH-----HHH--TTTCSEEEEECSSCCCTTT------HH---HHHHTCCCSEE
T ss_pred ------------CcCCEEEEeHHHHHhhH-----HHh--cccCCEEEEECCccCCChH------HH---HHHHhccCCEE
Confidence 13568888877653211 111 2348999999999997643 33 34556677889
Q ss_pred EEEeecCChhh
Q 004900 197 LALTATAAPKV 207 (724)
Q Consensus 197 l~LSAT~~~~v 207 (724)
++||||+....
T Consensus 222 l~LSATp~r~D 232 (237)
T 2fz4_A 222 LGLTATFERED 232 (237)
T ss_dssp EEEEESCC---
T ss_pred EEEecCCCCCC
Confidence 99999998653
No 93
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=147.87 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=102.8
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHc----C----CCeEEEEcCcHHHHHHHHHHHHHc-CCceeee
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALA----K----PGIVLVVSPLIALMENQVIGLKEK-GIAGEFL 108 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~----~----~~~vLVlsPl~aL~~qqv~~l~~~-gi~~~~l 108 (724)
.++++|.++++.+..|+++++.||||+|||+++.++++. . ...+|++.|+++|+.|..+.+... +......
T Consensus 61 p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~ 140 (235)
T 3llm_A 61 PVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKS 140 (235)
T ss_dssp GGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS
T ss_pred ChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCce
Confidence 478899999999999999999999999999988777653 2 237899999999999998888652 2221110
Q ss_pred cccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccc-ccCCCCChHHHHHHHHH
Q 004900 109 SSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCI-SSWGHDFRPSYRKLSSL 187 (724)
Q Consensus 109 ~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l-~~~G~dFrp~y~~L~~l 187 (724)
.+.. . ...........+|+++||.++.. .+.. ....+++|||||||.+ .+.+ |. ...+..+
T Consensus 141 ~g~~-~------~~~~~~~~~~~~Ivv~Tpg~l~~-----~l~~--~l~~~~~lVlDEah~~~~~~~--~~--~~~l~~i 202 (235)
T 3llm_A 141 CGYS-V------RFESILPRPHASIMFCTVGVLLR-----KLEA--GIRGISHVIVDEIHERDINTD--FL--LVVLRDV 202 (235)
T ss_dssp EEEE-E------TTEEECCCSSSEEEEEEHHHHHH-----HHHH--CCTTCCEEEECCTTSCCHHHH--HH--HHHHHHH
T ss_pred EEEe-e------chhhccCCCCCeEEEECHHHHHH-----HHHh--hhcCCcEEEEECCccCCcchH--HH--HHHHHHH
Confidence 0000 0 00001111346677777754432 1222 3567999999999985 3322 21 1245666
Q ss_pred HhhCCCCCEEEEeecCChhh
Q 004900 188 RNYLPDVPILALTATAAPKV 207 (724)
Q Consensus 188 ~~~~p~~pil~LSAT~~~~v 207 (724)
....++.++++||||++...
T Consensus 203 ~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 203 VQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHCTTSEEEEEECSSCCHH
T ss_pred HhhCCCCeEEEEecCCCHHH
Confidence 77778999999999999876
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.12 E-value=1.3e-05 Score=92.88 Aligned_cols=77 Identities=18% Similarity=0.087 Sum_probs=60.8
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHH--HHHHHHHHc-----CCCeEEEEcCcHHHHHHHH
Q 004900 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKS--MCYQIPALA-----KPGIVLVVSPLIALMENQV 95 (724)
Q Consensus 23 ~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKT--l~~~lpal~-----~~~~vLVlsPl~aL~~qqv 95 (724)
...+...|...|+-..-.+.|.+++..++.++.+++.+|+|+||| +.++++.+. .+..+++++||..++.+..
T Consensus 134 ~~~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~ 213 (608)
T 1w36_D 134 EALLAQTLDKLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLT 213 (608)
T ss_dssp HHHHHHHHHTTCCCTTSCCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHH
Confidence 356777777766533336899999999999999999999999999 667788775 2458999999999988766
Q ss_pred HHHH
Q 004900 96 IGLK 99 (724)
Q Consensus 96 ~~l~ 99 (724)
+.+.
T Consensus 214 e~~~ 217 (608)
T 1w36_D 214 ESLG 217 (608)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 5544
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.78 E-value=6.3e-05 Score=87.72 Aligned_cols=71 Identities=23% Similarity=0.151 Sum_probs=56.5
Q ss_pred CCCCHHHHHHHHHHHcCCc-EEEEcCCCchHHHHHH--H-HHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceee
Q 004900 37 AQFRDKQLDAIQAVLSGRD-CFCLMPTGGGKSMCYQ--I-PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEF 107 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~d-vlv~apTGsGKTl~~~--l-pal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~ 107 (724)
..|.+.|.+|+..++..++ .+|++|.|+|||.+.. + -.+.++.++||++||..-+.+.++.|...+.+..-
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilR 262 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILR 262 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEE
Confidence 3578999999999987775 5789999999996532 2 23457889999999999999999999887765443
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.62 E-value=0.00052 Score=79.71 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=56.5
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHH--HHHHHc--CCCeEEEEcCcHHHHHHHHHHHHHcCCce
Q 004900 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (724)
Q Consensus 36 ~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~--~lpal~--~~~~vLVlsPl~aL~~qqv~~l~~~gi~~ 105 (724)
...+++.|.+|+..++.+.-+++.+|+|+|||.+. ++..+. .+..++|++|+...+.+..+.+...|++.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~ 251 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 251 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeE
Confidence 35688999999999998778899999999999753 233333 46789999999999988888888777653
No 97
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00097 Score=79.54 Aligned_cols=70 Identities=23% Similarity=0.320 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH--HHHHc--CCCeEEEEcCcHHHHHHHHHHHHHcCCce
Q 004900 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (724)
Q Consensus 36 ~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~--lpal~--~~~~vLVlsPl~aL~~qqv~~l~~~gi~~ 105 (724)
+..+++.|.+|+..++.+.-+++.||.|+|||.+.. +..+. .+.++||++|+...+.+..+.+.+.|+..
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~i 431 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKV 431 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccE
Confidence 346789999999999887778999999999996532 22222 47799999999999999999998876543
No 98
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.40 E-value=0.00098 Score=79.48 Aligned_cols=70 Identities=23% Similarity=0.294 Sum_probs=56.3
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHH--HHHHHc--CCCeEEEEcCcHHHHHHHHHHHHHcCCce
Q 004900 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (724)
Q Consensus 36 ~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~--~lpal~--~~~~vLVlsPl~aL~~qqv~~l~~~gi~~ 105 (724)
...+.+.|.+|+..++.+.-+++.+|+|+|||.+. ++..+. .+..++|++||...+.+..+.+...|++.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~v 427 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 427 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcce
Confidence 34578999999999998877899999999999653 233333 46789999999999988888888777654
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.12 E-value=0.0025 Score=71.09 Aligned_cols=62 Identities=18% Similarity=0.219 Sum_probs=45.7
Q ss_pred cCCCCCCHHHHHHHHHHHcC----C-cEEEEcCCCchHHHHHH--HHHHc-CCC-eEEEEcCcHHHHHHHH
Q 004900 34 FGHAQFRDKQLDAIQAVLSG----R-DCFCLMPTGGGKSMCYQ--IPALA-KPG-IVLVVSPLIALMENQV 95 (724)
Q Consensus 34 fG~~~lr~~Q~eaI~ail~g----~-dvlv~apTGsGKTl~~~--lpal~-~~~-~vLVlsPl~aL~~qqv 95 (724)
+.|..+++.|.+++..++.. + .+++.|+.|+|||.+.. +-.+. .+. .+++++||...+....
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILS 91 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHH
Confidence 56889999999999977532 3 88999999999996432 22232 343 6999999987765443
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.03 E-value=0.003 Score=72.57 Aligned_cols=58 Identities=14% Similarity=-0.000 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHH--HHHHH-cCCCeEEEEcCcHHHHHHHH
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALMENQV 95 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~--~lpal-~~~~~vLVlsPl~aL~~qqv 95 (724)
.+.+.|.+++..++.++.+++.+|.|+|||.+. ++-.+ ..+..+++++||...+....
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~ 249 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLG 249 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhH
Confidence 478999999999999899999999999999643 22222 35678999999988776543
No 101
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.77 E-value=0.0043 Score=65.77 Aligned_cols=121 Identities=12% Similarity=0.039 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHh--cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccccc
Q 004900 244 DAYADLCSVLKA--NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGMG 321 (724)
Q Consensus 244 ~k~~~L~~lLk~--~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~G 321 (724)
.|+..|..+|.. ..+.+++||++..+..+-+..+|...|+.+.-+.|.....++. -.++...|.+.|.+.+-|
T Consensus 109 GKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-----~~~~~~~i~Lltsag~~g 183 (328)
T 3hgt_A 109 GKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-----ANDFSCTVHLFSSEGINF 183 (328)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESSCCCT
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-----cccCCceEEEEECCCCCC
Confidence 455555555543 2467899999999999999999999999999999985543211 124566666668888888
Q ss_pred cC-----CCCcceEEeeCCCCCHHHH-HHHHcccCCCC--C--CCeEEEEEccccHHH
Q 004900 322 ID-----RKDVRLVCHFNIPKSMEAF-YQESGRAGRDQ--L--PSKSLLYYGMDDRRR 369 (724)
Q Consensus 322 ID-----ip~V~~VI~~d~P~S~~~y-iQr~GRAGRdG--~--~g~~il~~~~~D~~~ 369 (724)
+| ....+.||.||..+++..= +|.+-|+.|.| + +-..+-+....-...
T Consensus 184 in~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh 241 (328)
T 3hgt_A 184 TKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDH 241 (328)
T ss_dssp TTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHH
T ss_pred cCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHH
Confidence 86 5678999999999998875 99999999973 3 334555555554443
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.76 E-value=0.16 Score=58.49 Aligned_cols=63 Identities=21% Similarity=0.229 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH--HHHH-cC----CCeEEEEcCcHHHHHHHHHHHHHc
Q 004900 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPAL-AK----PGIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~--lpal-~~----~~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
..+++.|.+++.. .+..++|.|+.|+|||.+.. +.-+ .. +..+|+|++|+..+.+..+++...
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 4689999999973 35689999999999997643 2222 22 257999999999999888888763
No 103
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.78 E-value=0.097 Score=49.82 Aligned_cols=30 Identities=20% Similarity=0.171 Sum_probs=22.1
Q ss_pred HHHHHHHHHHH---------cCCcEEEEcCCCchHHHHH
Q 004900 41 DKQLDAIQAVL---------SGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 41 ~~Q~eaI~ail---------~g~dvlv~apTGsGKTl~~ 70 (724)
+.|.+++..+. .|+.+++.+|+|+|||...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 45666655543 4678999999999999754
No 104
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.24 E-value=0.17 Score=55.07 Aligned_cols=63 Identities=21% Similarity=0.165 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHH----cC-CCeEEEEcCcHHHHHHHHHHHHH
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPAL----AK-PGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal----~~-~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
.+.|+|...+..+...+-+++..+-+.|||.+....++ .. +..+++++|+...+....+.++.
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 57999999998875556789999999999976543332 33 45799999999888776655554
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.14 E-value=0.05 Score=60.18 Aligned_cols=43 Identities=14% Similarity=-0.082 Sum_probs=33.5
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
.++.++.|+|||...+- +......+|++|+++++.++.+.+..
T Consensus 164 ~~I~G~aGsGKTt~I~~--~~~~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILS--RVNFEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEECTTSCHHHHHHH--HCCTTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHH--HhccCCeEEEeCCHHHHHHHHHHhhh
Confidence 57899999999986432 33346779999999999888777754
No 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.30 E-value=0.26 Score=52.40 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.1
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
+.+++.+|+|+|||....
T Consensus 46 ~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 469999999999997643
No 107
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.03 E-value=0.28 Score=47.12 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.5
Q ss_pred CcEEEEcCCCchHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (724)
..+++.+|+|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999754
No 108
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.94 E-value=0.54 Score=49.68 Aligned_cols=19 Identities=5% Similarity=-0.067 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (724)
+..+++.+|+|+|||.+..
T Consensus 45 ~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3679999999999998753
No 109
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.88 E-value=0.21 Score=55.26 Aligned_cols=125 Identities=14% Similarity=0.107 Sum_probs=58.0
Q ss_pred HHHHHHc----CCcEEEEcCCCchHHHHHH-HHH--Hc-CCCeEEEEcCcHHHHHHHHHHHH--HcCCceeeec-ccchH
Q 004900 46 AIQAVLS----GRDCFCLMPTGGGKSMCYQ-IPA--LA-KPGIVLVVSPLIALMENQVIGLK--EKGIAGEFLS-STQTM 114 (724)
Q Consensus 46 aI~ail~----g~dvlv~apTGsGKTl~~~-lpa--l~-~~~~vLVlsPl~aL~~qqv~~l~--~~gi~~~~l~-s~~~~ 114 (724)
.+..++. |.-+++.|++|+|||...+ +.. .. .+..+++++.-..- .+...++. ..|+...-+. +....
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~-~~l~~r~~~~~~~~~~~~l~~g~l~~ 270 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA-QQLVMRMLCAEGNINAQNLRTGKLTP 270 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH-HHHHHHHHHHHHTCCHHHHHTSCCCH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcCCCCH
Confidence 3455553 3457888999999996543 222 12 34578888744322 23333322 2344322111 11222
Q ss_pred HHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 115 ~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
.....+...+.... ...+++..+..+........+..+.....+++||||+.+.+..
T Consensus 271 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 271 EDWGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHH-SSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence 22221111111000 1233333322222222333334444445689999999999874
No 110
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.86 E-value=0.35 Score=55.47 Aligned_cols=63 Identities=21% Similarity=0.164 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHH----HcCC-CeEEEEcCcHHHHHHHHHHHHH
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPA----LAKP-GIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpa----l~~~-~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
.+.|+|...+..+-..+-+++..+-|.|||.+....+ +..+ ..+++++|+...+.+....++.
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~ 230 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQ 230 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 4789999999887556779999999999997644322 2333 4899999999988887766654
No 111
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.72 E-value=0.27 Score=54.32 Aligned_cols=125 Identities=11% Similarity=0.032 Sum_probs=58.9
Q ss_pred HHHHHHcC----CcEEEEcCCCchHHHHHH-HH--HHc-CCCeEEEEcCcHHHHHHHHHHHH--HcCCceeeec-ccchH
Q 004900 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-IP--ALA-KPGIVLVVSPLIALMENQVIGLK--EKGIAGEFLS-STQTM 114 (724)
Q Consensus 46 aI~ail~g----~dvlv~apTGsGKTl~~~-lp--al~-~~~~vLVlsPl~aL~~qqv~~l~--~~gi~~~~l~-s~~~~ 114 (724)
.+..++.| .=+++.|++|+|||...+ +. +.. .+..+++++.--.- .+...++. ..++...-+. +....
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~-~~l~~R~~~~~~~i~~~~l~~g~l~~ 267 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPA-AQLTLRMMCSEARIDMNRVRLGQLTD 267 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCH-HHHHHHHHHHHTTCCTTTCCGGGCCH
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhCCCCCH
Confidence 34555543 346788999999996433 22 222 35578888754221 23333322 2344332221 22222
Q ss_pred HHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 115 QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 115 ~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
.....+...+.... ...+.+..+..+........+..+.....+++||||..+.+..
T Consensus 268 ~~~~~~~~a~~~l~-~~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 268 RDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHHHH-TSCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcCC
Confidence 22222222111100 1233333222222223333444444444699999999999864
No 112
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.71 E-value=0.25 Score=53.40 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=22.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEc
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpal~~~~~vLVls 85 (724)
.+.+++.+|+|+|||......+-..+...+.+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~ 180 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNIS 180 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEee
Confidence 368999999999999876554444444444443
No 113
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.27 E-value=0.21 Score=53.35 Aligned_cols=153 Identities=20% Similarity=0.146 Sum_probs=70.5
Q ss_pred HHHHHHcC----CcEEEEcCCCchHHHHHHHH---HHcCCCeEEEEcCcHHHHHHHHHHHHH--cCCceeee-cccchHH
Q 004900 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFL-SSTQTMQ 115 (724)
Q Consensus 46 aI~ail~g----~dvlv~apTGsGKTl~~~lp---al~~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l-~s~~~~~ 115 (724)
.+..++.| .=+++.+++|+|||...+-. +...+..+++++.--.- .+.+.++.. .++...-+ .+..+..
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~-~ql~~Rlls~~~~v~~~~l~~g~Ls~~ 113 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSA-EQLALRALSDLTSINMHDLESGRLDDD 113 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCH-HHHHHHHHHHHHCCCHHHHHHTCCCHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCH-HHHHHHHHHHhhCCCHHHHhcCCCCHH
Confidence 34444443 44678889999999654322 22367788888754221 233333321 23322111 1222222
Q ss_pred HHHHHHhhhhcCCCCccEEE-eCcccccChhHHHHHHhhhhcC-CccEEEEccccccccCC------CCChHHHHHHHHH
Q 004900 116 VKTKIYEDLDSGKPSLRLLY-VTPELTATPGFMSKLKKIHSRG-LLNLVAIDEAHCISSWG------HDFRPSYRKLSSL 187 (724)
Q Consensus 116 ~~~~i~~~l~~~~~~~~il~-~TPE~i~T~~~l~~L~~~~~~~-~l~lIVIDEAH~l~~~G------~dFrp~y~~L~~l 187 (724)
....+........ ...+++ -+|. +........+..+.... .+++||||-.+.|...+ ...+.....|..+
T Consensus 114 e~~~l~~a~~~l~-~~~l~I~d~~~-~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~l 191 (338)
T 4a1f_A 114 QWENLAKCFDHLS-QKKLFFYDKSY-VRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTL 191 (338)
T ss_dssp HHHHHHHHHHHHH-HSCEEEECCTT-CCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-cCCeEEeCCCC-CcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence 2222221111000 122333 2332 11122333334443343 69999999999885421 1112222333333
Q ss_pred HhhCCCCCEEEEeec
Q 004900 188 RNYLPDVPILALTAT 202 (724)
Q Consensus 188 ~~~~p~~pil~LSAT 202 (724)
...+ ++|++++|-.
T Consensus 192 Akel-~vpVi~lsQl 205 (338)
T 4a1f_A 192 AREL-EIPIIALVQL 205 (338)
T ss_dssp HHHH-TSCEEEEEEC
T ss_pred HHHc-CCeEEEEEec
Confidence 3332 7888888765
No 114
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.82 E-value=0.76 Score=47.29 Aligned_cols=18 Identities=17% Similarity=0.012 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
..+++.+|+|+|||....
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999998653
No 115
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=92.74 E-value=0.2 Score=51.22 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=34.2
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHH--HcCCcEEEEcCCCchHHHHHHHHH
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ai--l~g~dvlv~apTGsGKTl~~~lpa 74 (724)
...|.++.-.++..+.|.+..... -...+.+... ..++.+++.+|+|+|||......+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la 72 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELP---LKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVA 72 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHH---HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHH---hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 445666776777777777643210 0111222222 234679999999999998654433
No 116
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.73 E-value=0.08 Score=53.16 Aligned_cols=37 Identities=24% Similarity=0.052 Sum_probs=25.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~ 88 (724)
.|.=.++.+|+|+|||...+--+ ..++.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 34556788999999997543222 23567888887764
No 117
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.72 E-value=0.16 Score=60.26 Aligned_cols=77 Identities=12% Similarity=0.001 Sum_probs=66.0
Q ss_pred CceEEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cccccCCCCcceEEe
Q 004900 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVCH 332 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a-~g~GIDip~V~~VI~ 332 (724)
+.+++|.++|+.-+.++++.+.+ .|+.+..+||+++..+|..+++.+.+|+.+|+|+|.. +...+++.++.+||.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVI 496 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVII 496 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEe
Confidence 45799999999999888887765 3789999999999999999999999999999999986 445678889999885
Q ss_pred eC
Q 004900 333 FN 334 (724)
Q Consensus 333 ~d 334 (724)
-.
T Consensus 497 DE 498 (780)
T 1gm5_A 497 DE 498 (780)
T ss_dssp ES
T ss_pred cc
Confidence 44
No 118
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.71 E-value=0.12 Score=48.20 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (724)
.|..+++.+|+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6788999999999999753
No 119
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=92.67 E-value=0.83 Score=42.53 Aligned_cols=17 Identities=18% Similarity=0.170 Sum_probs=14.9
Q ss_pred CcEEEEcCCCchHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (724)
+.+++.+|+|+|||...
T Consensus 44 ~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CceEEECCCCCCHHHHH
Confidence 57999999999999764
No 120
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=92.65 E-value=0.19 Score=58.28 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHcC--CcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHH
Q 004900 38 QFRDKQLDAIQAVLSG--RDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALM 91 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g--~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~ 91 (724)
.++.-|.+++..++.- .-.++.|+-|.|||.+.-+.+-.-...++|.+|+.+-+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~ 230 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKAST 230 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSC
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHH
Confidence 5788999999998863 34688999999999765444433345579999997644
No 121
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.54 E-value=0.45 Score=49.87 Aligned_cols=60 Identities=15% Similarity=0.054 Sum_probs=34.2
Q ss_pred ccccccCCCCCchHHHHHHHHHHcCCCCCCHHHHH-HHHH-HHcCCcEEEEcCCCchHHHHHHHHH
Q 004900 11 TSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLD-AIQA-VLSGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~e-aI~a-il~g~dvlv~apTGsGKTl~~~lpa 74 (724)
..+...|.++.-.+...+.|++...+ |.... .+.. ....+.+++.+|+|+|||+.....+
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~----~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia 72 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVIL----PVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA 72 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHH----HHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHH
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHH----HHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 34455677777777777777775311 10000 0000 0013569999999999998654433
No 122
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.52 E-value=0.22 Score=52.67 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=23.9
Q ss_pred CCHHHHHHHHHHH----cCC---cEEEEcCCCchHHHHHHH
Q 004900 39 FRDKQLDAIQAVL----SGR---DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 39 lr~~Q~eaI~ail----~g~---dvlv~apTGsGKTl~~~l 72 (724)
+.|+|.+++..+. +|+ -+++.+|.|+|||.....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 3577777765543 443 489999999999976543
No 123
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.39 E-value=0.33 Score=49.40 Aligned_cols=19 Identities=16% Similarity=0.072 Sum_probs=15.8
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
+.+++.+|+|+|||.....
T Consensus 65 ~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4689999999999986543
No 124
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=92.21 E-value=0.21 Score=46.77 Aligned_cols=18 Identities=22% Similarity=0.176 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCchHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (724)
.+.+++.+|+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 357999999999999754
No 125
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.07 E-value=0.37 Score=54.28 Aligned_cols=43 Identities=14% Similarity=0.213 Sum_probs=27.5
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCC
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA 204 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~ 204 (724)
.-.+|+|||+|.+.... +.....|..+... .+.|+++.+++..
T Consensus 148 ~~~vliIDEid~l~~~~---~~~l~~L~~~l~~-~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGD---RGGVGQLAQFCRK-TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTS---TTHHHHHHHHHHH-CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhh---HHHHHHHHHHHHh-cCCCEEEEEcCCC
Confidence 35789999999997532 2223344444443 4678888887754
No 126
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=92.02 E-value=1 Score=47.32 Aligned_cols=57 Identities=18% Similarity=0.068 Sum_probs=31.9
Q ss_pred cccCCCCCchHHHHHHHHHHcCCCCCCHHHHH-HHHH-HHcCCcEEEEcCCCchHHHHHHHHH
Q 004900 14 TQKNKPLHEKEALVKLLRWHFGHAQFRDKQLD-AIQA-VLSGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 14 ~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~e-aI~a-il~g~dvlv~apTGsGKTl~~~lpa 74 (724)
...|.++.-.++..+.|++..-+ |.+.. .... ....+.+++.+|+|+|||+.....+
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~----p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala 66 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVIL----PIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVA 66 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHH----HHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH----HHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHH
Confidence 45566777667777777664211 00000 0000 0112579999999999998654433
No 127
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.76 E-value=0.64 Score=44.83 Aligned_cols=37 Identities=24% Similarity=0.155 Sum_probs=26.0
Q ss_pred cCCcEEEEcCCCchHHHHHH-HHH--HcCCCeEEEEcCcH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ-IPA--LAKPGIVLVVSPLI 88 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~-lpa--l~~~~~vLVlsPl~ 88 (724)
.|+=.++.+|+|+|||...+ +.. ...+..++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 35557889999999998653 221 23567889998884
No 128
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.67 E-value=0.44 Score=50.03 Aligned_cols=122 Identities=9% Similarity=0.044 Sum_probs=58.0
Q ss_pred HHHHHHc----CCcEEEEcCCCchHHHHH-HHH--HHcCCCeEEEEcCcHHHHHHHHHHHHH--cCCceeeecccc---h
Q 004900 46 AIQAVLS----GRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSSTQ---T 113 (724)
Q Consensus 46 aI~ail~----g~dvlv~apTGsGKTl~~-~lp--al~~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l~s~~---~ 113 (724)
.+..++. |.=+++.+++|+|||... ++. +...+..+++++---. ..+...++.. .++...-+..+. .
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s-~~~l~~R~~~~~~~i~~~~l~~~~~~l~ 135 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLIVTAGSINAQKIKAARRDFA 135 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSC-HHHHHHHHHHHHTTCCHHHHHSCHHHHC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCC-HHHHHHHHHHHHcCCCHHHHhcCCCCCC
Confidence 3455554 345788999999999543 332 2334568888874422 1233333332 233321111110 0
Q ss_pred HHHH---HHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCcc--EEEEcccccccc
Q 004900 114 MQVK---TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISS 172 (724)
Q Consensus 114 ~~~~---~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~--lIVIDEAH~l~~ 172 (724)
.... ......+.. ..+++..+..+........+..+.....++ +||||-.+.+..
T Consensus 136 ~~~~~~l~~a~~~l~~----~~i~i~d~~~~~~~~i~~~i~~l~~~~~~~~~lVVID~l~~l~~ 195 (315)
T 3bh0_A 136 SEDWGKLSMAIGEISN----SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEP 195 (315)
T ss_dssp SSCHHHHHHHHHHHHT----SCEEEECCSCCBHHHHHHHHHHHHHTSSSCCEEEEEECGGGSBC
T ss_pred HHHHHHHHHHHHHHhC----CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCchhcCC
Confidence 0111 111111111 234333222222233444444444445688 999999998864
No 129
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.66 E-value=0.89 Score=47.97 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (724)
+..+++.+|+|+|||....
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 130
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.64 E-value=0.33 Score=50.79 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (724)
+..+++.+|+|+|||....
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3579999999999997653
No 131
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.42 E-value=0.36 Score=49.85 Aligned_cols=17 Identities=18% Similarity=0.090 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (724)
.+++.+|+|+|||....
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999997543
No 132
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.40 E-value=1.1 Score=47.34 Aligned_cols=17 Identities=24% Similarity=0.307 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (724)
.+++.+|+|+|||....
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 69999999999997643
No 133
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.37 E-value=0.96 Score=45.16 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
.+.+++.+|+|+|||.....
T Consensus 39 ~~~vll~G~~GtGKT~la~~ 58 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKA 58 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35789999999999986543
No 134
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=91.35 E-value=0.5 Score=52.12 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=21.1
Q ss_pred CcEEEEcCCCchHHHHHHHHHHcC-CCeEEEEc
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALAK-PGIVLVVS 85 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~~-~~~vLVls 85 (724)
+.+++.+|+|+|||+.....+-.. +...+.+.
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 579999999999998665444333 33334343
No 135
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.34 E-value=0.8 Score=47.65 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=12.2
Q ss_pred CccEEEEccccccc
Q 004900 158 LLNLVAIDEAHCIS 171 (724)
Q Consensus 158 ~l~lIVIDEAH~l~ 171 (724)
...+|+|||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 46799999999986
No 136
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=91.32 E-value=0.26 Score=48.47 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
-.++.++.|+|||+....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 368999999999986443
No 137
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.15 E-value=1.4 Score=45.75 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=33.1
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHH--HHcCCcEEEEcCCCchHHHHHHHHH
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQA--VLSGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~a--il~g~dvlv~apTGsGKTl~~~lpa 74 (724)
+...|.++.-.++..+.|++...+.-.+| +.+.. +..++.+++.+|+|+|||+....-+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~---~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala 70 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHP---DKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIA 70 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCSEEEEECSSSSSHHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCH---HHHHHcCCCCCceEEEECCCCcCHHHHHHHHH
Confidence 34456666666777666666422100001 11111 1235679999999999998655433
No 138
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=90.93 E-value=0.42 Score=46.77 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (724)
.++.+++.+|+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3578999999999999754
No 139
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.90 E-value=1.7 Score=44.43 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=17.6
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpa 74 (724)
++.+++.+|+|+|||.....-+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 5689999999999998654433
No 140
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=90.87 E-value=0.53 Score=46.83 Aligned_cols=36 Identities=17% Similarity=-0.083 Sum_probs=24.7
Q ss_pred CcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~a 89 (724)
+=.++.+|.|+|||...+--+ ..++.+++|+.|.+.
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 334678999999997644322 246788999998864
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.76 E-value=2.2 Score=41.11 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHH
Q 004900 55 DCFCLMPTGGGKSMCY 70 (724)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (724)
.+++.+|+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 142
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.68 E-value=0.66 Score=49.50 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.3
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp 73 (724)
+.+++.+|+|+|||+.....
T Consensus 85 ~~iLL~GppGtGKT~la~al 104 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAV 104 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHH
Confidence 56999999999999865443
No 143
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.66 E-value=0.7 Score=48.40 Aligned_cols=46 Identities=7% Similarity=0.047 Sum_probs=27.3
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhH
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~ 208 (724)
+...++||||||.+.... ...|.+.....|..-+++|.++-+..+.
T Consensus 81 ~~~kvviIdead~lt~~a------~naLLk~LEep~~~t~fIl~t~~~~kl~ 126 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQA------ANAFLKALEEPPEYAVIVLNTRRWHYLL 126 (305)
T ss_dssp SSSEEEEETTGGGBCHHH------HHHTHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CCceEEEeccHHHhCHHH------HHHHHHHHhCCCCCeEEEEEECChHhCh
Confidence 346899999999986422 2345555555554445555555443333
No 144
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=90.56 E-value=1.4 Score=46.44 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.9
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (724)
+..+++.+|+|+|||....
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997543
No 145
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=90.43 E-value=0.37 Score=52.01 Aligned_cols=76 Identities=8% Similarity=0.101 Sum_probs=62.4
Q ss_pred CCceEEEEecccccHHHHHHHHHh---CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccccc----ccCCCCcce
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFGM----GIDRKDVRL 329 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~---~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g~----GIDip~V~~ 329 (724)
.+.++||.++++.-+.++++.+.. .|+.+..+||+.+..++....+.+..|..+|+|+|.-.-. -++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 456899999999999999999988 5889999999999999888889999999999999964221 144456666
Q ss_pred EEe
Q 004900 330 VCH 332 (724)
Q Consensus 330 VI~ 332 (724)
||.
T Consensus 143 iVi 145 (414)
T 3oiy_A 143 VFV 145 (414)
T ss_dssp EEE
T ss_pred EEE
Confidence 663
No 146
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.43 E-value=0.29 Score=47.82 Aligned_cols=36 Identities=22% Similarity=0.074 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcH
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLI 88 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~ 88 (724)
|+=.++.+|+|+|||...+--+ ..++.+++|+.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 4446789999999997644322 23678899998884
No 147
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.39 E-value=1.3 Score=42.63 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
+.+++.+|+|+|||....
T Consensus 55 ~~~~l~G~~GtGKT~la~ 72 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA 72 (202)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 679999999999997543
No 148
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.24 E-value=0.61 Score=42.70 Aligned_cols=20 Identities=10% Similarity=-0.064 Sum_probs=16.9
Q ss_pred HcCCcEEEEcCCCchHHHHH
Q 004900 51 LSGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~ 70 (724)
..+..+++.+|+|+|||...
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 35678999999999999854
No 149
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=89.88 E-value=0.38 Score=53.30 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=17.0
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa 74 (724)
..+++.+|+|+|||......+
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia 71 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIA 71 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 368999999999998765544
No 150
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=89.40 E-value=0.35 Score=56.16 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH--HHH-Hc----CCCeEEEEcCcHHHHHHHHHHHHHc
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IPA-LA----KPGIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~--lpa-l~----~~~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
.+++.|.+++.. .+..++|.|+.|+|||.+.. +.- +. ....+|+|+.|+..+.+..+++...
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 478999999986 36789999999999997543 211 21 3468999999999999888888763
No 151
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.16 E-value=0.83 Score=49.80 Aligned_cols=59 Identities=10% Similarity=0.084 Sum_probs=37.6
Q ss_pred cccccCCCCCchHHHHHHHHHHcCCCCCCHHHH-HHHHHHH--cCCcEEEEcCCCchHHHHHHHHH
Q 004900 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQL-DAIQAVL--SGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~-eaI~ail--~g~dvlv~apTGsGKTl~~~lpa 74 (724)
.+...|.+++-.++..+.|++..-+ |... +.+..+- -.+.+|+.+|+|+|||+..-.-|
T Consensus 142 ~p~v~~~dIgGl~~~k~~l~e~v~~----Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA 203 (405)
T 4b4t_J 142 VPDSTYDMVGGLTKQIKEIKEVIEL----PVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVA 203 (405)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHH----HHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHH----HHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHH
Confidence 3466788888888888888875322 2111 1222211 13679999999999998654433
No 152
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.13 E-value=0.69 Score=44.84 Aligned_cols=33 Identities=21% Similarity=0.081 Sum_probs=22.9
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEc
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVS 85 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpal~~~~~vLVls 85 (724)
|.-+++.+|+|+|||.....-+...+..++++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 456789999999999654433334566777776
No 153
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=89.12 E-value=0.8 Score=44.92 Aligned_cols=132 Identities=17% Similarity=0.110 Sum_probs=67.3
Q ss_pred CcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHH-HHHHHHHHHHHcCCceeeecccch--HHHHHHHHhhhhcC
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA-LMENQVIGLKEKGIAGEFLSSTQT--MQVKTKIYEDLDSG 127 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~a-L~~qqv~~l~~~gi~~~~l~s~~~--~~~~~~i~~~l~~~ 127 (724)
..+++..++|.|||.+.+--+ +-++.+|+|+.-.+. .-..-...+..+++.......+.. .......
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~------- 101 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREAD------- 101 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHH-------
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHH-------
Confidence 478999999999998766433 457888888853331 000001112223322211110000 0000000
Q ss_pred CCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhh
Q 004900 128 KPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (724)
Q Consensus 128 ~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v 207 (724)
......-+....+....+.+++||+||.-....+|.--. ..+-.+....|...-+.+|+-..+.-
T Consensus 102 ------------~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 102 ------------TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCHRD 166 (196)
T ss_dssp ------------HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCCHH
T ss_pred ------------HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCcHH
Confidence 000011223334444456799999999987777664222 23444455556666777777766553
No 154
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=88.84 E-value=0.59 Score=54.92 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH--HH-HHc----CCCeEEEEcCcHHHHHHHHHHHHHc
Q 004900 37 AQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ--IP-ALA----KPGIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 37 ~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~--lp-al~----~~~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
..+++.|.+++.. .+..++|.|+.|+|||.+.. +. .+. .+..+|+|+.|+..+.+..+++...
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 4689999999976 35689999999999997533 22 222 2357999999999988887777653
No 155
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=88.55 E-value=1.5 Score=46.56 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=21.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHcCCCeEEEE
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpal~~~~~vLVl 84 (724)
.+.+++.+|+|+|||......+-..+...+.+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i 148 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSI 148 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEE
Confidence 35799999999999987654443333333333
No 156
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=88.50 E-value=0.58 Score=58.39 Aligned_cols=61 Identities=25% Similarity=0.308 Sum_probs=48.0
Q ss_pred CCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH---HHHHcC------CCeEEEEcCcHHHHHHHHHHHHH
Q 004900 38 QFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ---IPALAK------PGIVLVVSPLIALMENQVIGLKE 100 (724)
Q Consensus 38 ~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~---lpal~~------~~~vLVlsPl~aL~~qqv~~l~~ 100 (724)
.+++-|.++|..- +++++|.|+-|||||.+.+ +-.+.. ...+|+|++|++.+.+..+++..
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 5899999999874 7899999999999998643 223333 23799999999998887777655
No 157
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.33 E-value=3 Score=40.86 Aligned_cols=51 Identities=14% Similarity=-0.017 Sum_probs=30.8
Q ss_pred cCCcEEEEcCCCchHHHHH-HHH--HHcCCCeEEEEcCcHHHHHHHHHHHHHcCC
Q 004900 52 SGRDCFCLMPTGGGKSMCY-QIP--ALAKPGIVLVVSPLIALMENQVIGLKEKGI 103 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~-~lp--al~~~~~vLVlsPl~aL~~qqv~~l~~~gi 103 (724)
.|.-+++.+|+|+|||... ++. ....++.+++++-... ..+..+.+...|+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHHcCC
Confidence 4566789999999999753 332 2235667888764432 2344444544443
No 158
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.21 E-value=1.8 Score=45.12 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
..+++.+|+|+|||.....
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 4799999999999986544
No 159
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.02 E-value=2.4 Score=45.51 Aligned_cols=86 Identities=20% Similarity=0.203 Sum_probs=39.2
Q ss_pred CCCCccccccccccccCCCCCchHHHHHHHHHHcCCCCCCH-------------HHHHHHHHHHc------CCcEEEEcC
Q 004900 1 MKKSPLAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRD-------------KQLDAIQAVLS------GRDCFCLMP 61 (724)
Q Consensus 1 m~~~~~p~~~~~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~-------------~Q~eaI~ail~------g~dvlv~ap 61 (724)
|++...+..+.+...... ....+..+..+.+.||...... .=...+..++. |.-+++.+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~ 82 (366)
T 1xp8_A 4 MSKDATKEISAPTDAKER-SKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGP 82 (366)
T ss_dssp --------------CCHH-HHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEES
T ss_pred cccccccccCCCCCHHHH-HHHHHHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCccCCcEEEEEcC
Confidence 555555554444443321 1222345556666677543111 01245666665 245788899
Q ss_pred CCchHHHHHH-HHH--HcCCCeEEEEcCc
Q 004900 62 TGGGKSMCYQ-IPA--LAKPGIVLVVSPL 87 (724)
Q Consensus 62 TGsGKTl~~~-lpa--l~~~~~vLVlsPl 87 (724)
+|+|||...+ +.+ ...++.++++..-
T Consensus 83 pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 9999996433 221 2346677777744
No 160
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=87.42 E-value=5.1 Score=44.02 Aligned_cols=46 Identities=17% Similarity=0.056 Sum_probs=27.3
Q ss_pred cEEEEcCCCchHHHHHHHHH--H-cCCCeEEEEc--CcHHHHHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA--L-AKPGIVLVVS--PLIALMENQVIGLKE 100 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa--l-~~~~~vLVls--Pl~aL~~qqv~~l~~ 100 (724)
-+++++|+|+|||.....-+ + ..+.+++++. +.+.-+.+|...+..
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~ 149 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGN 149 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHH
Confidence 35678999999997543222 1 2466676665 445444555544433
No 161
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=87.07 E-value=6.2 Score=43.48 Aligned_cols=45 Identities=18% Similarity=0.001 Sum_probs=27.9
Q ss_pred cEEEEcCCCchHHHHHHH-H-HHc-CCCeEEEEc--CcHHHHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI-P-ALA-KPGIVLVVS--PLIALMENQVIGLK 99 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l-p-al~-~~~~vLVls--Pl~aL~~qqv~~l~ 99 (724)
-+++++++|+|||.+..- . .+. ++.+++++. |.+.-+.+|...+.
T Consensus 102 vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~ 151 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLL 151 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHH
Confidence 367889999999976432 2 222 455666665 55665555555443
No 162
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.05 E-value=3.1 Score=41.58 Aligned_cols=19 Identities=21% Similarity=0.466 Sum_probs=15.7
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
+.+++.+|+|+|||.....
T Consensus 46 ~~vll~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKA 64 (257)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 5689999999999986543
No 163
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.02 E-value=1.2 Score=49.04 Aligned_cols=60 Identities=15% Similarity=0.104 Sum_probs=35.9
Q ss_pred cccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHH--HcCCcEEEEcCCCchHHHHHHHHH
Q 004900 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ai--l~g~dvlv~apTGsGKTl~~~lpa 74 (724)
.+...|.+++-.++..+.|++..-+.-.+| +.+..+ --.+-+|+.+|+|+|||+..-.-+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p---~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA 236 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNP---EIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVA 236 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTSSHHHHHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCCeEEEECCCCCcHHHHHHHHH
Confidence 446678888877777777776432110011 112111 112679999999999999654433
No 164
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=86.84 E-value=3.1 Score=42.72 Aligned_cols=44 Identities=14% Similarity=0.226 Sum_probs=25.2
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhh
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKV 207 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v 207 (724)
.-.+|||||+|.+... ....|..+....+...++.++++.....
T Consensus 110 ~~~vliiDe~~~l~~~------~~~~L~~~le~~~~~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 110 SFKIIFLDEADALTQD------AQQALRRTMEMFSSNVRFILSCNYSSKI 153 (327)
T ss_dssp SCEEEEEETGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CCeEEEEeCCCcCCHH------HHHHHHHHHHhcCCCCeEEEEeCCcccc
Confidence 3578999999998642 2234445555544433455555544433
No 165
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.71 E-value=2.5 Score=46.82 Aligned_cols=60 Identities=13% Similarity=0.173 Sum_probs=38.5
Q ss_pred cccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHH--cCCcEEEEcCCCchHHHHHHHHH
Q 004900 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail--~g~dvlv~apTGsGKTl~~~lpa 74 (724)
.+...|.+++-.+++.+.|++..-+.-.+| +.+..+- --+.+|+.+|+|+|||+..-..|
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~p---e~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA 264 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSP---ERFATLGIDPPKGILLYGPPGTGKTLCARAVA 264 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCH---HHHHHHTCCCCSEEEECSCTTSSHHHHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCH---HHHHHCCCCCCCceEeeCCCCCcHHHHHHHHH
Confidence 456788899988999988887532211111 2222221 23679999999999998654333
No 166
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.69 E-value=5 Score=42.67 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=13.5
Q ss_pred CcEEE--EcCCCchHHHHH
Q 004900 54 RDCFC--LMPTGGGKSMCY 70 (724)
Q Consensus 54 ~dvlv--~apTGsGKTl~~ 70 (724)
..+++ .+|.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 35677 799999999754
No 167
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=86.61 E-value=1.2 Score=44.86 Aligned_cols=37 Identities=22% Similarity=0.026 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~a 89 (724)
|+=.++.++.|+|||...+--+ ..++.+++|+-|.+.
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 4556778999999997644322 346778899888853
No 168
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.53 E-value=4.6 Score=44.44 Aligned_cols=151 Identities=13% Similarity=0.090 Sum_probs=69.6
Q ss_pred HHHHHHcC----CcEEEEcCCCchHHHHHH-H--HHHcCCCeEEEEcCcHHHHHHHHHHHHH--cCCceeeeccc---ch
Q 004900 46 AIQAVLSG----RDCFCLMPTGGGKSMCYQ-I--PALAKPGIVLVVSPLIALMENQVIGLKE--KGIAGEFLSST---QT 113 (724)
Q Consensus 46 aI~ail~g----~dvlv~apTGsGKTl~~~-l--pal~~~~~vLVlsPl~aL~~qqv~~l~~--~gi~~~~l~s~---~~ 113 (724)
.+..++.| .=+++.|++|+|||...+ + -+...+..+++++---.- .|.+.++.. .|+....+..+ ..
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~-~ql~~R~~~~~~~i~~~~l~~g~~~l~ 264 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGK-KENIKRLIVTAGSINAQKIKAARRDFA 264 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCT-THHHHHHHHHHSCCCHHHHHHTGGGTC
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCH-HHHHHHHHHHHcCCCHHHHhcccCCCC
Confidence 34555543 457888999999996433 2 223356788888744221 222333322 23332211111 00
Q ss_pred H---HHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCcc--EEEEccccccccCCC-CChH-HH----H
Q 004900 114 M---QVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLN--LVAIDEAHCISSWGH-DFRP-SY----R 182 (724)
Q Consensus 114 ~---~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~--lIVIDEAH~l~~~G~-dFrp-~y----~ 182 (724)
. .........+.. ..+++..+.-+........+.+......++ +||||=.+.+..-+. .-|. .+ .
T Consensus 265 ~~~~~~l~~a~~~l~~----~~l~i~d~~~~s~~~i~~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~ 340 (444)
T 3bgw_A 265 SEDWGKLSMAIGEISN----SNINIFDKAGQSVNYIWSKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISR 340 (444)
T ss_dssp CSCHHHHHHHHHHHHT----SCEEEECCSSCBHHHHHHHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHH
Confidence 0 011111112211 234333221222233444444444444689 999999998864321 1222 11 1
Q ss_pred HHHHHHhhCCCCCEEEEeec
Q 004900 183 KLSSLRNYLPDVPILALTAT 202 (724)
Q Consensus 183 ~L~~l~~~~p~~pil~LSAT 202 (724)
.|..+.+. -++|+++++-.
T Consensus 341 ~Lk~lAke-~~v~vi~lsql 359 (444)
T 3bgw_A 341 DLKKMARE-LDVVVIALSQL 359 (444)
T ss_dssp HHHHHHHH-HTCEEEEEEEC
T ss_pred HHHHHHHH-hCCeEEEEecC
Confidence 22222222 27888888764
No 169
>3ndq_A Transcription elongation factor A protein 1; helix bundle; 1.93A {Homo sapiens}
Probab=86.45 E-value=0.52 Score=41.75 Aligned_cols=78 Identities=23% Similarity=0.252 Sum_probs=59.4
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHhhhcccCCcchhhHHHHHHHHHhhccChHHHHhhhcCCC
Q 004900 549 SDVLRQGSKEKLLNALRQAQQRLRNLTIEFEASAIFLENECYNKYGKSGKSFYYSQVASTIRWLSTANSIELTNRLGIDT 628 (724)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (724)
.+..|+.|++-|-+||....- ......+.+.-|..+|.++|..||..++ -|..++=+-+-=|....-.+|..|+-...
T Consensus 13 ~d~vR~k~~~lL~~aL~~~~d-~~~~~~~~~~lA~~IE~~if~~~~~~~~-~Yk~k~Rsl~fNLKd~kNp~Lr~~vl~G~ 90 (108)
T 3ndq_A 13 SDSVRLKCREMLAAALRTGDD-YIAIGADEEELGSQIEEAIYQEIRNTDM-KYKNRVRSRISNLKDAKNPNLRKNVLCGN 90 (108)
T ss_dssp CCHHHHHHHHHHHHHTTGGGH-HHHHTCCHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHTCTTCHHHHHHHHHTS
T ss_pred CChHHHHHHHHHHHHHHcCCC-CCcccccHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHcCCCCCHHHHHHHHcCC
Confidence 578999999999999864211 0111134567799999999999998774 69999999888888777788988886443
No 170
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.39 E-value=1.7 Score=47.72 Aligned_cols=18 Identities=28% Similarity=0.229 Sum_probs=15.5
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
+.+++.+|+|+|||....
T Consensus 131 ~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp CCEEEECSSSSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 579999999999998654
No 171
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=86.19 E-value=3.8 Score=38.02 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
..+.+||.++++.-+......|...|+.+..+++.+....+..+......+. .+++++|.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vlv~T~ 93 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGE--YRYLVATD 93 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 5678999999999999999999999999999999999999988888887764 77888774
No 172
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.73 E-value=4.5 Score=42.31 Aligned_cols=42 Identities=19% Similarity=0.244 Sum_probs=25.4
Q ss_pred ccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChh
Q 004900 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPK 206 (724)
Q Consensus 159 l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~ 206 (724)
..++||||+|.+... ....|..+....+....+.++++....
T Consensus 111 ~~viiiDe~~~l~~~------~~~~L~~~le~~~~~~~~il~~n~~~~ 152 (340)
T 1sxj_C 111 FKLIILDEADAMTNA------AQNALRRVIERYTKNTRFCVLANYAHK 152 (340)
T ss_dssp CEEEEETTGGGSCHH------HHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred ceEEEEeCCCCCCHH------HHHHHHHHHhcCCCCeEEEEEecCccc
Confidence 678999999988642 223455555555554455555554433
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.41 E-value=7.3 Score=40.41 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.7
Q ss_pred CcEEEEcCCCchHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (724)
..+++.+|+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999754
No 174
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=85.36 E-value=2.1 Score=40.30 Aligned_cols=79 Identities=15% Similarity=0.171 Sum_probs=60.6
Q ss_pred EEEcCCCchHHHHHHHHHHc--CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEE
Q 004900 57 FCLMPTGGGKSMCYQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLL 134 (724)
Q Consensus 57 lv~apTGsGKTl~~~lpal~--~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il 134 (724)
++..+....|-. .+.-.+. ..+.+||.++++..+......|...|+.+..+++.+....+..+......+. .+++
T Consensus 12 ~~~~~~~~~K~~-~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~--~~vL 88 (175)
T 2rb4_A 12 YVLCEHRKDKYQ-ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGK--EKVL 88 (175)
T ss_dssp EEECSSHHHHHH-HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTS--CSEE
T ss_pred EEEcCChHhHHH-HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCC--CeEE
Confidence 444444333543 2333332 3578999999999999999999999999999999999999998888888764 7888
Q ss_pred EeCc
Q 004900 135 YVTP 138 (724)
Q Consensus 135 ~~TP 138 (724)
++|.
T Consensus 89 vaT~ 92 (175)
T 2rb4_A 89 ITTN 92 (175)
T ss_dssp EECC
T ss_pred EEec
Confidence 8884
No 175
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.02 E-value=5.7 Score=41.62 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=24.8
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCCh
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAP 205 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~ 205 (724)
+...+|||||+|.+... ....|..+....+...++.++++-..
T Consensus 118 ~~~~vliiDe~~~l~~~------~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRH------SFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSSEEEEEECGGGSCHH------HHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CCeEEEEEECcchhcHH------HHHHHHHHHhcCCCceEEEEEeCChH
Confidence 34579999999988641 22344444554444445555555433
No 176
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=84.42 E-value=1.5 Score=49.05 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=19.3
Q ss_pred CcEEEEcCCCchHHHHHHHHHHcCCCe
Q 004900 54 RDCFCLMPTGGGKSMCYQIPALAKPGI 80 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpal~~~~~ 80 (724)
+.+++.+|+|+|||+.....+-..+..
T Consensus 239 ~~vLL~GppGtGKT~lAraia~~~~~~ 265 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAVANETGAF 265 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSE
T ss_pred CcEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 579999999999998765443333333
No 177
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=84.39 E-value=1.4 Score=45.61 Aligned_cols=19 Identities=21% Similarity=0.025 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
+-+++.+|+|+|||.....
T Consensus 37 ~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp SEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999986543
No 178
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=83.91 E-value=7.6 Score=37.81 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=54.7
Q ss_pred HcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 75 LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 75 l~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
...++.+||.++++.-+......|...|+.+..+++.+....+..+......+. .+++++|.
T Consensus 28 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vlvaT~ 89 (212)
T 3eaq_A 28 VASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGE--VRVLVATD 89 (212)
T ss_dssp HHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSS--CCEEEECT
T ss_pred hCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCC--CeEEEecC
Confidence 346789999999999999999999999999999999999999999988888774 78888885
No 179
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.83 E-value=2.2 Score=45.18 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=27.6
Q ss_pred HHHHHHcC-----CcEEEEcCCCchHHHHHH-HHHH--c------CCCeEEEEcCcH
Q 004900 46 AIQAVLSG-----RDCFCLMPTGGGKSMCYQ-IPAL--A------KPGIVLVVSPLI 88 (724)
Q Consensus 46 aI~ail~g-----~dvlv~apTGsGKTl~~~-lpal--~------~~~~vLVlsPl~ 88 (724)
.+..++.| .-+++.+|+|+|||...+ +..- . .++.+++|.-..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 35556643 457889999999996543 3332 2 356788887543
No 180
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.64 E-value=8.6 Score=36.98 Aligned_cols=34 Identities=18% Similarity=0.080 Sum_probs=22.4
Q ss_pred cCCcEEEEcCCCchHHHHH-HHHHH--cCCCeEEEEc
Q 004900 52 SGRDCFCLMPTGGGKSMCY-QIPAL--AKPGIVLVVS 85 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~-~lpal--~~~~~vLVls 85 (724)
.|.-+++.+|+|+|||... ++... ..++.++++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3566788999999999543 33322 2356677765
No 181
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=83.59 E-value=3.6 Score=50.89 Aligned_cols=76 Identities=9% Similarity=0.077 Sum_probs=64.7
Q ss_pred CCceEEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cccccCCCCcceEE
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGIDRKDVRLVC 331 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a-~g~GIDip~V~~VI 331 (724)
.+.+++|.|+|+.-+.++++.+.+ .++.+..+++..+..++..+++.+.+|+.+|+|+|.. +...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 456899999999999998888875 3678899999999999999999999999999999964 55558888898888
Q ss_pred e
Q 004900 332 H 332 (724)
Q Consensus 332 ~ 332 (724)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 3
No 182
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=83.56 E-value=1.4 Score=43.86 Aligned_cols=38 Identities=24% Similarity=0.044 Sum_probs=24.9
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIA 89 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~a 89 (724)
.|.=.++.+|.|+|||...+--+ ...+..++|+.|.+.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 34556789999999997433222 235678899988754
No 183
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=83.34 E-value=3.6 Score=41.18 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=43.8
Q ss_pred CCceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a 317 (724)
.+.++||.++++.-+.++++.+... ++.+..++|+.+...+...+ .+..+|+|+|.-
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~ 170 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPG 170 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHH
Confidence 3457999999999999998887664 78889999998876544332 356789999953
No 184
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=83.32 E-value=1.2 Score=54.97 Aligned_cols=76 Identities=8% Similarity=0.098 Sum_probs=62.8
Q ss_pred CCceEEEEecccccHHHHHHHHHh---CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc----cccCCCCcce
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG----MGIDRKDVRL 329 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~---~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g----~GIDip~V~~ 329 (724)
.+.++||.++|+.-+.+++..|.. .++.+..+||+++..+|....+.+.+|..+|||+|.-.- .-++..++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 456799999999999999999998 477899999999998888889999999999999996422 0145567777
Q ss_pred EEe
Q 004900 330 VCH 332 (724)
Q Consensus 330 VI~ 332 (724)
||.
T Consensus 200 lVi 202 (1104)
T 4ddu_A 200 VFV 202 (1104)
T ss_dssp EEE
T ss_pred EEE
Confidence 774
No 185
>2lw4_A Transcription elongation factor A protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=83.28 E-value=0.82 Score=40.80 Aligned_cols=78 Identities=21% Similarity=0.285 Sum_probs=56.8
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHhhhcccCCcchhhHHHHHHHHHhhccChHHHHhhhcCCC
Q 004900 549 SDVLRQGSKEKLLNALRQAQQRLRNLTIEFEASAIFLENECYNKYGKSGKSFYYSQVASTIRWLSTANSIELTNRLGIDT 628 (724)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (724)
+|..|+.|++-|.+||.......+ ...+.+.-|..+|.++|..||..++ =|..++=|-+-=|.-.+-.+|..|+-...
T Consensus 9 ~D~vRdk~~e~L~~aL~~~~~~~~-~~~~~~~~A~~IE~~~f~~~~~~~~-~Yk~k~Rsl~~NLkd~~Np~Lr~~vl~G~ 86 (113)
T 2lw4_A 9 CDAVRNKCREMLTAALQTDHDHVA-IGADCERLSAQIEECIFRDVGNTDM-KYKNRVRSRISNLKDAKNPDLRRNVLCGA 86 (113)
T ss_dssp CSTTHHHHHHHHHHHHHSSTHHHH-HTCCHHHHHHHHHHHHHHHHTCTTT-HHHHHHHHHHHHHHCSSSSHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHHHHHcCCCccc-ccchHHHHHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHcCCCCCHHHHHHHHcCC
Confidence 457899999999999963211111 1234566789999999999998875 48888877777787777778888875443
No 186
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.26 E-value=8.4 Score=37.54 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHH--cC-------CCeEEEEcC
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPAL--AK-------PGIVLVVSP 86 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpal--~~-------~~~vLVlsP 86 (724)
.|.-+++.+|+|+|||......+. .. ...++++.-
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 345678999999999975543333 22 456777653
No 187
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=83.22 E-value=4.8 Score=37.82 Aligned_cols=60 Identities=12% Similarity=0.069 Sum_probs=53.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
..+.+||.++++.-+......|...|+.+..+++.+....+..+......+. .+++++|.
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 89 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 89 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEESS
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCC--CcEEEECC
Confidence 5678999999999999999999999999999999999999988888888764 78888884
No 188
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=83.17 E-value=5.3 Score=38.40 Aligned_cols=73 Identities=23% Similarity=0.248 Sum_probs=58.0
Q ss_pred CchHHHHHHHHHHc-CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 63 GGGKSMCYQIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 63 GsGKTl~~~lpal~-~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
...|.. +++-.+. .++.+||+++++.-+......|...|+.+..+++.+....+..+......+. .+++++|.
T Consensus 39 ~~~K~~-~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMV-YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGK--KDVLVATD 112 (191)
T ss_dssp GGGHHH-HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTS--CSEEEECH
T ss_pred hHHHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCC--CEEEEEcC
Confidence 346643 3444443 3568999999999999999999999999999999999999888888888764 67777773
No 189
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=83.09 E-value=2.6 Score=39.23 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=52.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
..+.+||.++++.-+......|...|+.+..+++.+....+..+......+. .+++++|.
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 88 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS--SRILISTD 88 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTS--CSEEEEEG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCC--CEEEEEcC
Confidence 5678999999999999999999999999999999999999988888887764 77887774
No 190
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=82.82 E-value=0.42 Score=47.33 Aligned_cols=49 Identities=16% Similarity=0.031 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCchHHH-HHHHHH--H-cCCCeEEEEcCcHHHHHHHHHHHHHcC
Q 004900 53 GRDCFCLMPTGGGKSM-CYQIPA--L-AKPGIVLVVSPLIALMENQVIGLKEKG 102 (724)
Q Consensus 53 g~dvlv~apTGsGKTl-~~~lpa--l-~~~~~vLVlsPl~aL~~qqv~~l~~~g 102 (724)
|.-+++.+++|+|||. |.++.+ . ..+..+++++-.-. ..+....+...+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~~~ 82 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMASFG 82 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHTTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHHcC
Confidence 4567899999999995 444432 2 23567777764322 234444454443
No 191
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.77 E-value=6.5 Score=40.14 Aligned_cols=35 Identities=17% Similarity=0.045 Sum_probs=22.6
Q ss_pred cCCcEEEEcCCCchHHHHHH-HHHH--cC-CCeEEEEcC
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ-IPAL--AK-PGIVLVVSP 86 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~-lpal--~~-~~~vLVlsP 86 (724)
.|.-+++.+|+|+|||.... +... .. +..++++..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 45667889999999997543 2222 23 336777753
No 192
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=82.70 E-value=7.2 Score=45.71 Aligned_cols=19 Identities=16% Similarity=0.184 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (724)
+.++++++|+|+|||....
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4679999999999998643
No 193
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.32 E-value=3.7 Score=45.72 Aligned_cols=115 Identities=11% Similarity=0.009 Sum_probs=53.0
Q ss_pred CCcEEEEcCCCchHHHHHH-HHH-Hc-C-CCeEEEEcCcHHHHHHHHHHHH--HcCCceee---ec-ccchHHHHHHHHh
Q 004900 53 GRDCFCLMPTGGGKSMCYQ-IPA-LA-K-PGIVLVVSPLIALMENQVIGLK--EKGIAGEF---LS-STQTMQVKTKIYE 122 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-lpa-l~-~-~~~vLVlsPl~aL~~qqv~~l~--~~gi~~~~---l~-s~~~~~~~~~i~~ 122 (724)
|.=+++.+++|+|||...+ +.. +. . +..+++++---.- .+...++. ..++...- +. +.........+..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~-~~l~~r~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 320 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESV-EETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFD 320 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCH-HHHHHHHHHHHTTSCCTTCHHHHHHHHHTSHHHHHHH
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCH-HHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHH
Confidence 3457889999999996433 322 22 3 5578888744221 23333332 23333210 10 0011111111122
Q ss_pred hhhcCCCCccEEEe-CcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 123 DLDSGKPSLRLLYV-TPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 123 ~l~~~~~~~~il~~-TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
.+.. ...+.+. +|..+.....+..+........+++||||=...+.
T Consensus 321 ~~~~---~~~l~i~~~~~~~~~~~i~~~i~~~~~~~~~~lvVID~l~~l~ 367 (503)
T 1q57_A 321 ELFG---NDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDHISIVV 367 (503)
T ss_dssp HHHT---TTCEEEECCC---CHHHHHHHHHHHHHTTCCSEEEEECTTCCC
T ss_pred HHhc---cCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEccchhcC
Confidence 2111 1233333 22112223344444444445569999999888764
No 194
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.10 E-value=2 Score=38.68 Aligned_cols=80 Identities=15% Similarity=0.123 Sum_probs=59.5
Q ss_pred chHHHHhhhHHHHHHHHHHHHHHhcc--cchhhhhhHHHHHHHHhhhcccCCcchhhHHHHHHHHHhhccChHHHHhhhc
Q 004900 548 VSDVLRQGSKEKLLNALRQAQQRLRN--LTIEFEASAIFLENECYNKYGKSGKSFYYSQVASTIRWLSTANSIELTNRLG 625 (724)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (724)
-++.+|+.+++-|.++|..+-.-... .+.+...-|..+|.++|..||..++. |..++=+-+-=|.-..-.+|..|+-
T Consensus 8 ~~d~~Rd~~r~~L~eaL~~~~~~~~~~~~~~~~~~lA~~IE~~lf~~~~~~~~~-Yk~k~Rsl~fNLKd~kNp~Lr~~vl 86 (120)
T 2dme_A 8 SADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFRDTDAK-YKNKYRSLMFNLKDPKNNILFKKVL 86 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHHHHCSCSHH-HHHHHHHHTHHHHSSSCCSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHcCCCcHH-HHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 46899999999999999754432110 11334478899999999999987754 8888888887788777778888885
Q ss_pred CCC
Q 004900 626 IDT 628 (724)
Q Consensus 626 ~~~ 628 (724)
...
T Consensus 87 ~G~ 89 (120)
T 2dme_A 87 KGE 89 (120)
T ss_dssp HTS
T ss_pred cCC
Confidence 543
No 195
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=81.76 E-value=12 Score=39.04 Aligned_cols=31 Identities=13% Similarity=0.212 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHH-HHHH--cCCCeEEEEc
Q 004900 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~-lpal--~~~~~vLVls 85 (724)
-+++++|+|+|||.... +... ..++.++++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 46789999999996543 3322 2456666654
No 196
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=81.67 E-value=3.3 Score=40.06 Aligned_cols=55 Identities=20% Similarity=0.244 Sum_probs=44.3
Q ss_pred ceEEEEecccccHHHHHHHHHhC-----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 259 TCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~-----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
.++||.|+++.-+.++++.+... ++.+..++|+.+...+.. .+..+..+|+|+|.
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~~~~~i~v~T~ 142 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKKNCPHIVVGTP 142 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHHSCCSEEEECH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhcCCCCEEEeCH
Confidence 47999999999999998888764 788999999998766543 34557778999995
No 197
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.63 E-value=2.2 Score=46.80 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=37.5
Q ss_pred ccccccCCCCCchHHHHHHHHHHcCC--CCCCHHHHHHHHHHH--cCCcEEEEcCCCchHHHHHHHHH
Q 004900 11 TSQTQKNKPLHEKEALVKLLRWHFGH--AQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~L~~~fG~--~~lr~~Q~eaI~ail--~g~dvlv~apTGsGKTl~~~lpa 74 (724)
..+...|.+++-.++..+.|++..-+ ..+ +.+...- -.+-+|+.+|+|+|||+..-.-|
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~p-----e~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA 237 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHP-----ELYEEMGIKPPKGVILYGAPGTGKTLLAKAVA 237 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCC-----HHHHHHTCCCCSEEEEESSTTTTHHHHHHHHH
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCH-----HHHHhCCCCCCCCCceECCCCchHHHHHHHHH
Confidence 34567788888888888888775321 111 1112111 12679999999999998654433
No 198
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=81.20 E-value=16 Score=37.36 Aligned_cols=18 Identities=22% Similarity=-0.116 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (724)
|+-+++.+|.|+|||...
T Consensus 31 ~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 577899999999999753
No 199
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.16 E-value=4.2 Score=40.47 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=30.2
Q ss_pred cccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHH--cCCcEEEEcCCCchHHHHHHH
Q 004900 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail--~g~dvlv~apTGsGKTl~~~l 72 (724)
.+...|.++...++....+++..-. + ....++..+- -.+.+++.+|+|+|||.....
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~--~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 68 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H--HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H--HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHH
Confidence 3444566666656665555543110 0 0112233221 123489999999999976543
No 200
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=80.97 E-value=2.7 Score=54.49 Aligned_cols=95 Identities=16% Similarity=0.216 Sum_probs=55.9
Q ss_pred HHHHHc------CCcEEEEcCCCchHHHHHH---HHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHH
Q 004900 47 IQAVLS------GRDCFCLMPTGGGKSMCYQ---IPALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVK 117 (724)
Q Consensus 47 I~ail~------g~dvlv~apTGsGKTl~~~---lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~ 117 (724)
+..++. |+.+++.+|+|+|||.... .-+..++..++++..--++.... ++.+|+...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~----------- 1480 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID----------- 1480 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTT-----------
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCch-----------
Confidence 666666 5789999999999997543 23344677888888664332221 344454321
Q ss_pred HHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 118 TKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 118 ~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
.+++..|+-. ..++..+.........++|||||..-+.
T Consensus 1481 --------------~l~v~~~~~~--E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1481 --------------NLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp --------------TCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred --------------hceeecCChH--HHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 1233333311 1233334444445668999999997544
No 201
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=80.25 E-value=2.9 Score=40.01 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=44.5
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
..+.+||.++++.-+......|...|+.+..+++.+....+..+......+. .+++++|.
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~--~~vLvaT~ 104 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 104 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTS--SSEEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCC--CeEEEEcC
Confidence 4678999999999999999999999999999999998888888888877764 77877773
No 202
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=79.94 E-value=2.3 Score=50.39 Aligned_cols=66 Identities=11% Similarity=0.038 Sum_probs=39.6
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHHHHcCCC
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKPG 79 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~lpal~~~~ 79 (724)
+...|.++...++..+.|++..-+.-.+|.+-.-+. +.-.+.+|+.+|.|+|||+..-.-+-..+.
T Consensus 472 p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g-~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFG-MTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp CCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSC-CCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcC-CCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 456677888888888888886544322221110000 011256899999999999876554444333
No 203
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.78 E-value=11 Score=38.17 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=17.2
Q ss_pred HHcCCcEEEEcCCCchHHHHHH
Q 004900 50 VLSGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 50 il~g~dvlv~apTGsGKTl~~~ 71 (724)
+..|.-+++.+|+|+|||....
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~ 48 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLAL 48 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHH
Confidence 3466778899999999997543
No 204
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=79.59 E-value=2.6 Score=47.40 Aligned_cols=73 Identities=10% Similarity=0.071 Sum_probs=61.3
Q ss_pred ceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc------ccccCCCCcceEE
Q 004900 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF------GMGIDRKDVRLVC 331 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~------g~GIDip~V~~VI 331 (724)
+.+||.++++.-+.+....|...|+.+..+|++.+..++..+...+..|..+|+++|.-- ...++..++.+||
T Consensus 66 g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vV 144 (523)
T 1oyw_A 66 GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLA 144 (523)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEE
T ss_pred CCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEE
Confidence 578999999999999999999999999999999999999999999999999999999631 1223445666666
No 205
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=79.29 E-value=2.3 Score=48.59 Aligned_cols=60 Identities=18% Similarity=0.177 Sum_probs=54.3
Q ss_pred CceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHh--hcCCceEEEEccc
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDW--ISSRKQVVVATVA 317 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F--~~g~~~VLVAT~a 317 (724)
.+.+||.++++.-+++....|...|+.+..++|+++..++..++..+ ..+..+|||+|.-
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe 145 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPE 145 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChh
Confidence 35799999999999999999999999999999999999998888888 5789999999983
No 206
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=78.54 E-value=2.4 Score=41.64 Aligned_cols=56 Identities=14% Similarity=0.260 Sum_probs=43.6
Q ss_pred CCceEEEEecccccHHHHHHHHHhC-----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~-----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a 317 (724)
.+.++||.|+++.-+.++++.+... ++.+..++|+.+..++...+ ...+|+|+|.-
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~ 151 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPG 151 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHH
Confidence 3467999999999999999988763 67888999999876654432 25789999863
No 207
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=78.37 E-value=5.1 Score=42.36 Aligned_cols=52 Identities=19% Similarity=0.255 Sum_probs=32.8
Q ss_pred CCchHHHHHHHHHH-cCCCCCCHHHHHHHHHHH------------------cCCcEEEEcCCCchHHHHHHHHHH
Q 004900 20 LHEKEALVKLLRWH-FGHAQFRDKQLDAIQAVL------------------SGRDCFCLMPTGGGKSMCYQIPAL 75 (724)
Q Consensus 20 ~~~~~~l~~~L~~~-fG~~~lr~~Q~eaI~ail------------------~g~dvlv~apTGsGKTl~~~lpal 75 (724)
+...+++...|.+. .|.+. ..+.+...+ .+..+++.+|+|+|||.....-+-
T Consensus 3 ~~~~~~l~~~l~~~i~G~~~----~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 3 LPTPHEIRNHLDDYVIGQEQ----AKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCHHHHHHHHHHHCCSCHH----HHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhhccCHHH----HHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 45567788888775 45432 222222222 346799999999999987654443
No 208
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=77.92 E-value=3.9 Score=40.44 Aligned_cols=55 Identities=11% Similarity=0.154 Sum_probs=43.0
Q ss_pred CceEEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 258 DTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
+..+||.|+|+.-+.++++.+.. .++.+..++|+.+.......+.. ..+|+|+|.
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp 160 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 160 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECH
Confidence 45699999999999888877765 48889999999987766544432 478999995
No 209
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=77.87 E-value=6.5 Score=46.89 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
+++++++|+|+|||....
T Consensus 192 ~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCEEEECTTSCHHHHHH
T ss_pred CceEEEcCCCCCHHHHHH
Confidence 479999999999997644
No 210
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=77.85 E-value=5.6 Score=44.22 Aligned_cols=55 Identities=13% Similarity=0.126 Sum_probs=31.1
Q ss_pred ccccCCCCCchHHHHHHHHHHcCC-CCCCHHHHHHHHHHH--cCCcEEEEcCCCchHHHHHHH
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGH-AQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~-~~lr~~Q~eaI~ail--~g~dvlv~apTGsGKTl~~~l 72 (724)
....|.++.-.++....+++..-+ ..+ ..+..+- -.+.+++.+|+|+|||+....
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~-----~~~~~~g~~~p~gvLL~GppGtGKT~Lara 68 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDP-----SKFNRIGARMPKGILLVGPPGTGKTLLARA 68 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCT-----HHHHTTTCCCCSEEEEECCTTSSHHHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhCh-----HHHhhcCCCCCCeEEEECCCCCCHHHHHHH
Confidence 345566677667766666653211 000 1111110 124699999999999986543
No 211
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=77.51 E-value=6.7 Score=40.94 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=27.5
Q ss_pred HHHHHHc-----CCcEEEEcCCCchHHHHH-HHHHH-c-C------CCeEEEEcCcH
Q 004900 46 AIQAVLS-----GRDCFCLMPTGGGKSMCY-QIPAL-A-K------PGIVLVVSPLI 88 (724)
Q Consensus 46 aI~ail~-----g~dvlv~apTGsGKTl~~-~lpal-~-~------~~~vLVlsPl~ 88 (724)
.+..++. |.-+++.+|+|+|||... ++..- . . ++.+++++--.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3555553 356789999999999644 34332 2 2 56788887543
No 212
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=76.82 E-value=0.85 Score=45.08 Aligned_cols=34 Identities=18% Similarity=0.050 Sum_probs=22.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH---H-cCCCeEEEEc
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPA---L-AKPGIVLVVS 85 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpa---l-~~~~~vLVls 85 (724)
.|.-+.+.+|+|+|||.....-+ + ..+..++++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~ 66 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 46678899999999997543322 2 3444555554
No 213
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=76.04 E-value=2.4 Score=40.81 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=59.9
Q ss_pred CCcccchHHHHhhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHhhhccc-CCcchhhHHHHHHHHHhhccChHHHH
Q 004900 543 PSKNAVSDVLRQGSKEKLLNALRQAQQRLRNLTIEFEASAIFLENECYNKYGK-SGKSFYYSQVASTIRWLSTANSIELT 621 (724)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 621 (724)
++.+.-++.+|+.+++-|.+||... -.....+...-|..+|.++|..||. .+..-|..++=+-+-=|....-.+|.
T Consensus 8 v~~~~~~d~vRdk~~~lL~~aL~~~---~~~~~~~~~~~A~~IE~~if~~~~~~~~~k~Yk~k~Rsl~~NLKd~~N~~Lr 84 (178)
T 3po3_S 8 VDTAIYHHKLRDQVLKALYDVLAKE---SEHPPQSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLK 84 (178)
T ss_dssp -------CHHHHHHHHHHHHHTTSS---SSCSTTHHHHHHHHHHHHHHHHTSCSSSSTHHHHHHHHHHHHHHSSSCSHHH
T ss_pred cCcCcCCChHHHHHHHHHHHHHhcC---CCCchhhHHHHHHHHHHHHHHHhcCCCchhhhhhhhhHHHHHcCCCCCHHHH
Confidence 5566678899999999999988642 1222345566899999999999987 45458999999999889877777999
Q ss_pred hhhcCCC
Q 004900 622 NRLGIDT 628 (724)
Q Consensus 622 ~~~~~~~ 628 (724)
.||-...
T Consensus 85 ~~vl~g~ 91 (178)
T 3po3_S 85 HKIANGD 91 (178)
T ss_dssp HHHHHCC
T ss_pred HHHhcCC
Confidence 9987654
No 214
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=75.50 E-value=8.1 Score=40.10 Aligned_cols=62 Identities=21% Similarity=0.278 Sum_probs=54.7
Q ss_pred cCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcc
Q 004900 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (724)
Q Consensus 76 ~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE 139 (724)
..++.+||.++++.-+......|...|+.+..+++.+....+..+......+. .+++++|..
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~--~~vLVaT~v 87 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGE--VRVLVATDV 87 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTS--CCEEEECST
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCC--ceEEEEech
Confidence 35789999999999999999999999999999999999999998888888775 888888853
No 215
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=74.85 E-value=23 Score=39.54 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=20.1
Q ss_pred cEEEEcCCCchHHHHHH-HHHHc--CCCeEEEE
Q 004900 55 DCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVV 84 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~-lpal~--~~~~vLVl 84 (724)
-+.+++|+|+|||...- |..+. .++.+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 36789999999997543 32222 46677776
No 216
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=74.82 E-value=6.9 Score=39.59 Aligned_cols=56 Identities=14% Similarity=0.093 Sum_probs=29.7
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHH--cCCcEEEEcCCCchHHHHHHH
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail--~g~dvlv~apTGsGKTl~~~l 72 (724)
+...|.++...++....++...-. + ....++..+- -.+.+++.+|+|+|||.....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~--~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L--KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 92 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H--HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H--HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHH
Confidence 344555666666666555543110 0 0012222221 123489999999999976543
No 217
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=72.81 E-value=7.6 Score=46.02 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
+.+|+.+|.|+|||+..-.
T Consensus 239 ~GILL~GPPGTGKT~LAra 257 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 5699999999999986543
No 218
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=72.67 E-value=5 Score=39.05 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=38.5
Q ss_pred CCceEEEEecccccHHHHHHHHHhC---CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAG---GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~---gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
.+.++||.++++.-+.++++.+... ++.+..++|+.+...+...+ . ...+|+|+|.
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDI---S-KGVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHH---H-SCCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHh---c-CCCCEEEECH
Confidence 4567999999999999999998873 77888899887765443322 2 3478999995
No 219
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=72.53 E-value=5.6 Score=37.83 Aligned_cols=55 Identities=22% Similarity=0.161 Sum_probs=41.8
Q ss_pred CceEEEEecccccHHHHHHHHHhC-----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~-----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
+.++||.|+++.-+.++++.+... ++.+..++|+.+..+.... ..+..+|+|+|.
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~i~v~T~ 130 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR----LDDTVHVVIATP 130 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH----TTSCCSEEEECH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh----cCCCCCEEEeCH
Confidence 457999999999999998888653 5778889999876554322 235678999996
No 220
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=72.41 E-value=2.6 Score=38.45 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=17.9
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.+..+++.+|+|+|||.....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~ 43 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARY 43 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHH
Confidence 557899999999999987654
No 221
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=71.97 E-value=18 Score=37.30 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=20.5
Q ss_pred CCcEEEEcCCCchHHHHHH-HHHH-c--CCCeEEEEc
Q 004900 53 GRDCFCLMPTGGGKSMCYQ-IPAL-A--KPGIVLVVS 85 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-lpal-~--~~~~vLVls 85 (724)
++-+++++|+|+|||.... +... . .+.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4457789999999997543 3222 2 343565554
No 222
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=71.89 E-value=60 Score=32.00 Aligned_cols=39 Identities=10% Similarity=0.186 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCc-eEEEEecccccHHHHHHHHHhCCCc
Q 004900 246 YADLCSVLKANGDT-CAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 246 ~~~L~~lLk~~~~~-~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
...+.++|...+.. +.-|||.+...+.-+...|++.|+.
T Consensus 187 ~~~~~~~l~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~~ 226 (298)
T 3tb6_A 187 LEKVKATLEKNSKHMPTAILCYNDEIALKVIDMLREMDLK 226 (298)
T ss_dssp HHHHHHHHHHTTTSCCSEEECSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCCCCCCeEEEEeCcHHHHHHHHHHHHcCCC
Confidence 66777888876542 5688898888888888888887754
No 223
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=71.87 E-value=6.7 Score=37.24 Aligned_cols=56 Identities=21% Similarity=0.147 Sum_probs=42.2
Q ss_pred CCceEEEEecccccHHHHHHHHHhC--CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAG--GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~--gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
.+.++||.|+++.-+.++++.+... ++.+..++|+.+.......+. ...+|+|+|.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 3457999999999999999999875 467888999887654433322 2577999985
No 224
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=71.75 E-value=2.1 Score=46.68 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=30.4
Q ss_pred cCCcEEEEcCCCchHHHHH--HHHHH-cCCCeEEEEcCcHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCY--QIPAL-AKPGIVLVVSPLIALM 91 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~--~lpal-~~~~~vLVlsPl~aL~ 91 (724)
...+++++++||+|||... +++.+ ..+..++|+=|--++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchh
Confidence 3468999999999999875 45544 3567778888887775
No 225
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=71.67 E-value=76 Score=30.79 Aligned_cols=177 Identities=14% Similarity=0.044 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccc
Q 004900 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (724)
Q Consensus 90 L~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~ 169 (724)
+.....+.+.+.|....+................+.... ++-++..|..-.....+..+.. ..+-+|++|..-.
T Consensus 20 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~----~~iPvV~~~~~~~ 93 (272)
T 3o74_A 20 IAKQLEQGARARGYQLLIASSDDQPDSERQLQQLFRARR--CDALFVASCLPPEDDSYRELQD----KGLPVIAIDRRLD 93 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCCCSSCCHHHHHHH----TTCCEEEESSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHcC--CCEEEEecCccccHHHHHHHHH----cCCCEEEEccCCC
Confidence 333444556667777766655544433333444443332 4445555433122333333322 2366777774321
Q ss_pred ---cccCCCCChHH-HHHHHHHHhhCCCCCEEEEeecCChhhHHH----HHHhhccCCCeEeeccCCCCceEEEEEeccc
Q 004900 170 ---ISSWGHDFRPS-YRKLSSLRNYLPDVPILALTATAAPKVQKD----VMESLCLQNPLVLKSSFNRPNLFYEVRYKDL 241 (724)
Q Consensus 170 ---l~~~G~dFrp~-y~~L~~l~~~~p~~pil~LSAT~~~~v~~d----i~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~ 241 (724)
+...+.|.... +.....+.. .....+.+++.........+ +.+.+. ... ............
T Consensus 94 ~~~~~~V~~d~~~~~~~a~~~L~~-~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~--~~~--------~~~~~~~~~~~~ 162 (272)
T 3o74_A 94 PAHFCSVISDDRDASRQLAASLLS-SAPRSIALIGARPELSVSQARAGGFDEALQ--GYT--------GEVRRYQGEAFS 162 (272)
T ss_dssp TTTCEEEEECHHHHHHHHHHHHHT-TCCSEEEEEEECTTSHHHHHHHHHHHHHTT--TCC--------SEEEEEEESSSS
T ss_pred ccccCEEEEchHHHHHHHHHHHHH-CCCcEEEEEecCCCCccHHHHHHHHHHHHH--HcC--------CChheeecCCCC
Confidence 11112232222 222333333 35566777776544322211 111111 110 001111111223
Q ss_pred hhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCC
Q 004900 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGI 283 (724)
Q Consensus 242 ~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi 283 (724)
.+.....+.++|...+..+.-|||.+-..+..+...|++.|+
T Consensus 163 ~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 204 (272)
T 3o74_A 163 RECGQRLMQQLIDDLGGLPDALVTTSYVLLQGVFDTLQARPV 204 (272)
T ss_dssp HHHHHHHHHHHHHHHTSCCSEEEESSHHHHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHhcCCCCCcEEEEeCchHHHHHHHHHHHcCC
Confidence 345567777888776523567888888888888888888764
No 226
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=71.62 E-value=6.3 Score=42.09 Aligned_cols=45 Identities=20% Similarity=0.087 Sum_probs=28.8
Q ss_pred HHHHHHHc-C-----CcEEEEcCCCchHHHHHH-HHHH--cCCCeEEEEcCcHH
Q 004900 45 DAIQAVLS-G-----RDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPLIA 89 (724)
Q Consensus 45 eaI~ail~-g-----~dvlv~apTGsGKTl~~~-lpal--~~~~~vLVlsPl~a 89 (724)
..+..++. | .-+++.+|+|+|||...+ +... ..++.+++|..-..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 34566666 3 457889999999996432 2222 25677888875543
No 227
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=71.08 E-value=9.3 Score=37.30 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=40.5
Q ss_pred CCceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
.+.++||.|+++.-+.++++.+... ++.+..++|+.+.......+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 3557999999999999999888764 47888999988755443322 4678999985
No 228
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=70.98 E-value=10 Score=40.26 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=52.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
..+.+||+++++.-+....+.|...|+.+..+++......+..+......+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlvaT~ 334 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK--SPILVATA 334 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS--SCEEEECH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC--CCEEEECC
Confidence 4678999999999999999999999999999999999999988888887765 67777775
No 229
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=70.81 E-value=5.1 Score=42.28 Aligned_cols=46 Identities=13% Similarity=0.075 Sum_probs=28.5
Q ss_pred cEEEEcCCCchHHHHHH-HHH-Hc-C--CCeEEEEcCcHHHHHHHHHHHHHcCC
Q 004900 55 DCFCLMPTGGGKSMCYQ-IPA-LA-K--PGIVLVVSPLIALMENQVIGLKEKGI 103 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~-lpa-l~-~--~~~vLVlsPl~aL~~qqv~~l~~~gi 103 (724)
-+++.+|+|+|||...+ +.+ .. . ++.+++|..--++-.. .++++|+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGv 80 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGV 80 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCC
Confidence 47889999999996432 221 22 2 6788888866554221 3555554
No 230
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=70.70 E-value=4.7 Score=48.15 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (724)
.+++.+|||+|||....
T Consensus 590 ~vLl~Gp~GtGKT~lA~ 606 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAK 606 (854)
T ss_dssp EEEEBSCSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58999999999998654
No 231
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=70.36 E-value=4.4 Score=39.94 Aligned_cols=57 Identities=23% Similarity=0.330 Sum_probs=36.1
Q ss_pred CCceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
.+.++||.++++.-+.++++.+... ++.+..++|+...... .+.+..+..+|+|+|.
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp 157 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTP 157 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECH
Confidence 3457999999999999999988764 5677778887654332 3345567788999994
No 232
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=68.90 E-value=16 Score=38.60 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHHHHHHc------CCcEEEEcCCCchHHHHH-HHHH--HcCCCeEEEEcCc
Q 004900 45 DAIQAVLS------GRDCFCLMPTGGGKSMCY-QIPA--LAKPGIVLVVSPL 87 (724)
Q Consensus 45 eaI~ail~------g~dvlv~apTGsGKTl~~-~lpa--l~~~~~vLVlsPl 87 (724)
..+..++. |.-+++.+|+|+|||... ++.. ...++.++++.--
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34666666 345788999999999653 3322 2356677777643
No 233
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=68.78 E-value=8.6 Score=40.62 Aligned_cols=20 Identities=10% Similarity=0.007 Sum_probs=15.3
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (724)
.|.-+++.+|+|+|||...+
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34557899999999996543
No 234
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=68.63 E-value=10 Score=39.91 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=53.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
..+.+||+++++.-+......|...|+.+..+++......+..+......+. .+++++|.
T Consensus 265 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 324 (412)
T 3fht_A 265 TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK--EKVLVTTN 324 (412)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CSEEEECG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC--CcEEEEcC
Confidence 4678999999999999999999999999999999999999999998888775 77888875
No 235
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=68.33 E-value=16 Score=38.88 Aligned_cols=64 Identities=16% Similarity=0.138 Sum_probs=38.3
Q ss_pred HHHHHHHHHHcCCCCCCHHH-------------HHHHHHHHc------CCcEEEEcCCCchHHHHHH-HH--HHcCCCeE
Q 004900 24 EALVKLLRWHFGHAQFRDKQ-------------LDAIQAVLS------GRDCFCLMPTGGGKSMCYQ-IP--ALAKPGIV 81 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~~Q-------------~eaI~ail~------g~dvlv~apTGsGKTl~~~-lp--al~~~~~v 81 (724)
+..+..+.+.||-..+.+.. ...+..++. |+-+++.+++|+|||...+ +. +...+..+
T Consensus 15 ~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~v 94 (356)
T 1u94_A 15 AAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTC 94 (356)
T ss_dssp HHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 34455666667765432211 134666665 3557889999999997543 22 22356678
Q ss_pred EEEcCc
Q 004900 82 LVVSPL 87 (724)
Q Consensus 82 LVlsPl 87 (724)
+++..-
T Consensus 95 lyid~E 100 (356)
T 1u94_A 95 AFIDAE 100 (356)
T ss_dssp EEEESS
T ss_pred EEEeCC
Confidence 887753
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=68.29 E-value=2.6 Score=43.20 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=31.4
Q ss_pred ccccCCCCCchHHHHHHHHHHcCCCCCCHHH-HHHHHHHH--cCCcEEEEcCCCchHHHHHHH
Q 004900 13 QTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 13 ~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q-~eaI~ail--~g~dvlv~apTGsGKTl~~~l 72 (724)
+...|.++...+++.+.|++.+- .|+. .+++..+- -.+.+++.+|.|+|||+..-.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~----~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL----APVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT----HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH----HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHH
Confidence 45678889888888888887532 2221 22333321 123499999999999986543
No 237
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=68.10 E-value=13 Score=37.31 Aligned_cols=70 Identities=16% Similarity=0.114 Sum_probs=48.3
Q ss_pred CceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----c--ccccCCCC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----F--GMGIDRKD 326 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a-----~--g~GIDip~ 326 (724)
+.++||.++++.-+.++++.++.. +..+..++|+......... +..+ .+|+|+|.- + ..++++.+
T Consensus 126 ~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~ 201 (262)
T 3ly5_A 126 GTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYKN 201 (262)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCccccc
Confidence 457999999999999999888763 5677888898876554332 2333 789999942 1 12345555
Q ss_pred cceEE
Q 004900 327 VRLVC 331 (724)
Q Consensus 327 V~~VI 331 (724)
+++||
T Consensus 202 l~~lV 206 (262)
T 3ly5_A 202 LQCLV 206 (262)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 65555
No 238
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=68.07 E-value=54 Score=37.72 Aligned_cols=82 Identities=29% Similarity=0.239 Sum_probs=65.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~ 156 (724)
.+.++||+++++..+......|...|+++..+++......+..+......+. ++|+++|... ..| .+.
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~--~~VLVaT~~l--~~G--------lDi 511 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK--YDVLVGINLL--REG--------LDI 511 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS--CSEEEESCCC--STT--------CCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC--eEEEEecchh--hCC--------ccc
Confidence 5779999999999999999999999999999999999889988888887765 7788887632 122 122
Q ss_pred CCccEEEEcccccc
Q 004900 157 GLLNLVAIDEAHCI 170 (724)
Q Consensus 157 ~~l~lIVIDEAH~l 170 (724)
..+++||+-+++..
T Consensus 512 p~v~lVi~~d~d~~ 525 (661)
T 2d7d_A 512 PEVSLVAILDADKE 525 (661)
T ss_dssp TTEEEEEETTTTCC
T ss_pred CCCCEEEEeCcccc
Confidence 34788888888753
No 239
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=67.85 E-value=12 Score=38.72 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=52.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
....+||+++++.-+....+.|+..|+.+..+++......+..+......+. .+++++|.
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 296 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKK--IRILIATD 296 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTS--SSEEEECT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCC--CeEEEECC
Confidence 3568999999999999999999999999999999999999888888887764 77877774
No 240
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=67.76 E-value=26 Score=36.46 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=53.7
Q ss_pred cCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 76 ~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
...+.+||+++++.-+....+.|...|+.+..+++......+..+......+. .+++++|.
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vlv~T~ 308 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ--RRILVATN 308 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC--CSEEEESC
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--CcEEEECC
Confidence 35789999999999999999999999999999999999999888888887764 77888884
No 241
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=67.40 E-value=12 Score=39.14 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=53.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
..+.+||+++++.-+......|+..|+.+..+++......+..+......+. .+++++|.
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 301 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR--SKVLITTN 301 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS--CCEEEECG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 3578999999999999999999999999999999999999999998888775 77888775
No 242
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=67.23 E-value=38 Score=35.50 Aligned_cols=49 Identities=20% Similarity=0.256 Sum_probs=28.1
Q ss_pred ccEEEEccccccccCCCCChHHHHHHHHH-HhhCCCCCEEEEeecCChhhHHHH
Q 004900 159 LNLVAIDEAHCISSWGHDFRPSYRKLSSL-RNYLPDVPILALTATAAPKVQKDV 211 (724)
Q Consensus 159 l~lIVIDEAH~l~~~G~dFrp~y~~L~~l-~~~~p~~pil~LSAT~~~~v~~di 211 (724)
.++++||.+...... ......|..+ +...|+.+++++.++........+
T Consensus 212 ~d~vliDtaG~~~~~----~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~ 261 (328)
T 3e70_C 212 IDVVLIDTAGRSETN----RNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQA 261 (328)
T ss_dssp CSEEEEEECCSCCTT----TCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHH
T ss_pred chhhHHhhccchhHH----HHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHH
Confidence 567889988654321 1112233332 234577788888888776555433
No 243
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=67.02 E-value=12 Score=39.54 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=53.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
..+.+||+++++.-+......|...|+.+..+++......+..+......+. .+++++|.
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~--~~vLv~T~ 316 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK--VRTLVCSD 316 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS--SSEEEESS
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC--CcEEEEcC
Confidence 4678999999999999999999999999999999999999988888887764 77888885
No 244
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=66.86 E-value=4.2 Score=39.42 Aligned_cols=55 Identities=18% Similarity=0.087 Sum_probs=35.4
Q ss_pred CCceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
.+.++||.++++.-+.++++.+... ++.+..++|+.+..+.... +. ..+|+|+|.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp 139 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTP 139 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECH
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECH
Confidence 3457999999999999998888753 6788889998765543322 22 277899885
No 245
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=66.63 E-value=5.6 Score=38.96 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=28.3
Q ss_pred CCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHH
Q 004900 36 HAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 36 ~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~ 70 (724)
+...+..|..++..+..|.-+.+++|.|+|||...
T Consensus 5 i~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 33445577888998888988999999999999754
No 246
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.69 E-value=20 Score=45.86 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=48.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCC
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKP 129 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~ 129 (724)
|.-+++.+|+|+|||...+-.+ ...++.+++++---.+ .+.. ...+|+..
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~-~ql~--A~~lGvd~------------------------ 784 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL-DPIY--ARKLGVDI------------------------ 784 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCC-CHHH--HHHTTCCG------------------------
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchH-HHHH--HHHcCCCh------------------------
Confidence 3568889999999996443222 2355677777643222 1111 33334321
Q ss_pred CccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 130 SLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 130 ~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
-++++..+..+ ...+..+........+++||||+...+.
T Consensus 785 -~~L~i~~~~~l--eei~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 785 -DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp -GGCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred -hheEEecCCcH--HHHHHHHHHHHHccCCCEEEEechhhhc
Confidence 12344443321 1233333333334568999999999886
No 247
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=64.35 E-value=12 Score=37.94 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
...+++.+|+|+|||.....
T Consensus 50 ~~~vll~G~~GtGKT~la~~ 69 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARR 69 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 56899999999999986543
No 248
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=63.91 E-value=46 Score=34.35 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCchHHHHHH-HHHHc--CCCeEEEEc
Q 004900 53 GRDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-lpal~--~~~~vLVls 85 (724)
|.-+.+++|+|+|||...- +..+. .++.+++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3456789999999997543 33332 356666554
No 249
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=63.79 E-value=59 Score=32.29 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (724)
.+++.++.|.|||...+
T Consensus 8 ~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58889999999998644
No 250
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=63.74 E-value=7.8 Score=40.14 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=20.3
Q ss_pred HHHHHcCCcEEEEcCCCchHHHHHHH
Q 004900 47 IQAVLSGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 47 I~ail~g~dvlv~apTGsGKTl~~~l 72 (724)
..++..++.+++.+|+|+|||.....
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la~~ 65 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSVNT 65 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHHHH
Confidence 34455688999999999999976543
No 251
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=63.50 E-value=14 Score=38.99 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=53.1
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
..+.+||+++++.-+......|...|+.+..+++......+..+......+. .+++++|.
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 334 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA--SRVLISTD 334 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS--SCEEEECG
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC--CCEEEECC
Confidence 4578999999999999999999999999999999999999988888888775 77888775
No 252
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=62.94 E-value=20 Score=37.78 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=17.5
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpa 74 (724)
...+++.+|+|+|||.....-+
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 4579999999999998765433
No 253
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=62.59 E-value=7.6 Score=42.95 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=47.5
Q ss_pred CceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc-----ccc-c-CCCC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~-----g~G-I-Dip~ 326 (724)
+.++||.|+++.-+.+++..+... ++.+..+||+.+...+...+. ...+|+|+|.-. ..| + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 567999999999999888888764 899999999987655432221 236799999542 222 3 5667
Q ss_pred cceEEe
Q 004900 327 VRLVCH 332 (724)
Q Consensus 327 V~~VI~ 332 (724)
+++||.
T Consensus 131 ~~~vVi 136 (556)
T 4a2p_A 131 FTLMIF 136 (556)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777774
No 254
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=62.57 E-value=35 Score=36.85 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHc-----CCcEEEEcCCCchHHHHHH-HHH-Hc-------CCCeEEEEcC
Q 004900 47 IQAVLS-----GRDCFCLMPTGGGKSMCYQ-IPA-LA-------KPGIVLVVSP 86 (724)
Q Consensus 47 I~ail~-----g~dvlv~apTGsGKTl~~~-lpa-l~-------~~~~vLVlsP 86 (724)
+..++. |.-+.+.+|+|+|||.... +.. .. .++.++++.-
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 455553 3557889999999996544 322 22 2456777764
No 255
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=62.08 E-value=27 Score=38.64 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=20.0
Q ss_pred HHHHH---HcCCcEEEEcCCCchHHHHHH
Q 004900 46 AIQAV---LSGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 46 aI~ai---l~g~dvlv~apTGsGKTl~~~ 71 (724)
+|..+ .+|+.+++.+|.|.|||....
T Consensus 141 ~ID~L~pi~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 141 VVDLLAPYIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp HHHHHSCEETTCEEEEECCSSSCHHHHHH
T ss_pred HHHHHhhhccCCEEEEECCCCCCccHHHH
Confidence 44444 478899999999999997543
No 256
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=61.65 E-value=98 Score=31.58 Aligned_cols=33 Identities=21% Similarity=0.201 Sum_probs=20.9
Q ss_pred CCcEEEEcCCCchHHHHHH-HHHH--cCCCeEEEEc
Q 004900 53 GRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~-lpal--~~~~~vLVls 85 (724)
++-+.++++.|+|||.... +..+ ..++.++++-
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 3446678999999996543 3322 2466666664
No 257
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=61.62 E-value=1.2e+02 Score=29.79 Aligned_cols=176 Identities=9% Similarity=0.016 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccc
Q 004900 90 LMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (724)
Q Consensus 90 L~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~ 169 (724)
++....+.+.+.|....+................+.... ++-++..|... ....+..+ ....+-+|++|....
T Consensus 26 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~-~~~~~~~~----~~~~iPvV~~~~~~~ 98 (291)
T 3egc_A 26 VASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERR--VDGLILAPSEG-EHDYLRTE----LPKTFPIVAVNRELR 98 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEECCCSS-CCHHHHHS----SCTTSCEEEESSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCC--CCEEEEeCCCC-ChHHHHHh----hccCCCEEEEecccC
Confidence 334444556667777666555444333333444443332 44444444332 22222222 223466777775332
Q ss_pred ---cccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHH----HHHhh---ccCCCeEeeccCCCCceEEEEEec
Q 004900 170 ---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD----VMESL---CLQNPLVLKSSFNRPNLFYEVRYK 239 (724)
Q Consensus 170 ---l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~d----i~~~l---~l~~~~vi~~s~~r~ni~~~v~~~ 239 (724)
+...+.|....-..+...........+.+++.........+ +.+.+ ++..... .+.. ..
T Consensus 99 ~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~~~~~--------~~~~---~~ 167 (291)
T 3egc_A 99 IPGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFRAAMSAAGLPVRQE--------WIAA---GG 167 (291)
T ss_dssp CTTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHHHHHHHTTCCCCGG--------GEEC-----
T ss_pred CCCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHHHHHHHcCCCCCHH--------HeEe---CC
Confidence 11112232222233333333346677888877654322111 11111 2111100 0000 00
Q ss_pred cchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 240 DLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 240 ~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
...+.....+.++|...+ .+..|||.+...+..+...|.+.|+.
T Consensus 168 ~~~~~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~~ 211 (291)
T 3egc_A 168 VRADNGRDGAIKVLTGAD-RPTALLTSSHRITEGAMQALNVLGLR 211 (291)
T ss_dssp ----CCHHHHHHHHTC-C-CCSEEEESSHHHHHHHHHHHHHHTCC
T ss_pred CChhHHHHHHHHHHhCCC-CCcEEEECCcHHHHHHHHHHHHcCCC
Confidence 111223455666665543 45678888888888888888776654
No 258
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=61.57 E-value=13 Score=41.45 Aligned_cols=50 Identities=14% Similarity=0.044 Sum_probs=39.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHc
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEK 101 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~ 101 (724)
.|....+.+-||+|||++..-.+-..+..+|||+|....+.+.++.|+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhh
Confidence 34567889999999998543333334678999999999999999999986
No 259
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=61.23 E-value=1.4e+02 Score=30.14 Aligned_cols=41 Identities=7% Similarity=0.054 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
+.-+..+.++|...+ .+.-|||.+...+.-+...|++.|+.
T Consensus 227 ~~~~~~~~~ll~~~~-~~~ai~~~nd~~A~g~~~al~~~G~~ 267 (338)
T 3dbi_A 227 ASGAEGVEMLLERGA-KFSALVASNDDMAIGAMKALHERGVA 267 (338)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC-CCeEEEECChHHHHHHHHHHHHcCCC
Confidence 345566777776543 46788898888888888888887654
No 260
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=61.21 E-value=83 Score=34.23 Aligned_cols=41 Identities=27% Similarity=0.162 Sum_probs=24.9
Q ss_pred cEEEEcCCCchHHHHHHHHH--H-cC-CCeEEEEc--CcHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA--L-AK-PGIVLVVS--PLIALMENQV 95 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa--l-~~-~~~vLVls--Pl~aL~~qqv 95 (724)
-+++++++|+|||.+..--+ + .+ +.+++++. |.+..+.+|.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql 148 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL 148 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHH
Confidence 45677999999997543222 2 24 66777665 5554444443
No 261
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=61.16 E-value=16 Score=37.82 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=17.8
Q ss_pred HHHHHHcC-----CcEEEEcCCCchHHHHH
Q 004900 46 AIQAVLSG-----RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g-----~dvlv~apTGsGKTl~~ 70 (724)
.+..++.| .-+++.+|+|+|||...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 45556643 45788999999999643
No 262
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=60.76 E-value=12 Score=37.02 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=41.5
Q ss_pred CceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a 317 (724)
+.++||.|+++.-+.++++.+... ++.+..++|+.+.......+ ....+|+|+|.-
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~ 159 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPG 159 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHH
Confidence 457999999999999988887653 56778889988765443222 346789999863
No 263
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=60.67 E-value=10 Score=39.36 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.7
Q ss_pred CCcEEEEcCCCchHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (724)
++.+++.+|+|+|||...
T Consensus 152 ~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999754
No 264
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.11 E-value=3.7 Score=39.82 Aligned_cols=55 Identities=11% Similarity=0.118 Sum_probs=39.4
Q ss_pred CceEEEEecccccHHHHHHHHHhC--------CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG--------GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~--------gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
+.++||.|+++.-+.++++.+.+. ++.+..++|+.+..... ....+..+|+|+|.
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~~~~~Iiv~Tp 134 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL----EKLNVQPHIVIGTP 134 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT----CCCSSCCSEEEECH
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH----HHcCCCCCEEEeCH
Confidence 457999999999999988877653 57778888887543321 11234677999985
No 265
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=59.33 E-value=46 Score=43.40 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=52.8
Q ss_pred HHHHHHHc------CCcEEEEcCCCchHHHHHHHHH---HcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHH
Q 004900 45 DAIQAVLS------GRDCFCLMPTGGGKSMCYQIPA---LAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQ 115 (724)
Q Consensus 45 eaI~ail~------g~dvlv~apTGsGKTl~~~lpa---l~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~ 115 (724)
..+..++. |.-+++.+|+|+|||...+-.+ ...+..+++++---++- +. ..+.+|+..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s~~-~~--~a~~lGvd~---------- 435 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALD-PI--YARKLGVDI---------- 435 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCC-HH--HHHHTTCCT----------
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCCHH-HH--HHHHcCCCH----------
Confidence 34666665 3567889999999996543222 23456778877443321 11 133344321
Q ss_pred HHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccccc
Q 004900 116 VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCIS 171 (724)
Q Consensus 116 ~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~ 171 (724)
-++++..|..+ ...+..+..+.....+++||||....+.
T Consensus 436 ---------------~~L~I~~~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 436 ---------------DNLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp ---------------TTCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred ---------------HHeEEeCCCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 12333333211 1223333333334568999999999886
No 266
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=58.91 E-value=1.5e+02 Score=29.50 Aligned_cols=172 Identities=12% Similarity=0.025 Sum_probs=75.8
Q ss_pred HHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccc---
Q 004900 92 ENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH--- 168 (724)
Q Consensus 92 ~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH--- 168 (724)
....+.+.+.|....+................+.... ++-+++.|.... ...+..+.. ..+-+|++|-..
T Consensus 47 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~~-~~~~~~l~~----~~iPvV~i~~~~~~~ 119 (305)
T 3huu_A 47 NGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKS--VDGFILLYSLKD-DPIEHLLNE----FKVPYLIVGKSLNYE 119 (305)
T ss_dssp HHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHHHTTC--CSEEEESSCBTT-CHHHHHHHH----TTCCEEEESCCCSST
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CCEEEEeCCcCC-cHHHHHHHH----cCCCEEEECCCCccc
Confidence 3334455566776665554443333333344443332 444444443222 222222222 236677777542
Q ss_pred ccccCCCCCh-HHHHHHHHHHhhCCCCCEEEEeecCChhhHH----HHHHhhccCCCeEeeccCCCCceEEEEEeccchh
Q 004900 169 CISSWGHDFR-PSYRKLSSLRNYLPDVPILALTATAAPKVQK----DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLD 243 (724)
Q Consensus 169 ~l~~~G~dFr-p~y~~L~~l~~~~p~~pil~LSAT~~~~v~~----di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~ 243 (724)
.+...+.|.. ..+.....+.. .....+.+++......... -+.+.+.-... .... +...+...
T Consensus 120 ~~~~V~~D~~~~g~~a~~~L~~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~~l~~~g~-------~~~~----~~~~~~~~ 187 (305)
T 3huu_A 120 NIIHIDNDNIDAAYQLTQYLYH-LGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKI-------SNDC----VVIKSMND 187 (305)
T ss_dssp TCCEEECCHHHHHHHHHHHHHH-TTCCSEEEEEESSCBHHHHHHHHHHHHHHHHTTC-------CCCE----EEECSHHH
T ss_pred CCcEEEeCHHHHHHHHHHHHHH-CCCCeEEEEcCCcccchhHHHHHHHHHHHHHcCC-------Cccc----EEecCcHH
Confidence 1111222322 33333334444 3667788887765433221 11111111110 0000 11122212
Q ss_pred hHHHHHHHH-HHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 244 DAYADLCSV-LKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 244 ~k~~~L~~l-Lk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
.+..+.++ |...+ .+.-|||.+...+.-+...|++.|+.
T Consensus 188 -~~~~~~~~~l~~~~-~~~ai~~~nd~~A~g~~~al~~~g~~ 227 (305)
T 3huu_A 188 -LRDFIKQYCIDASH-MPSVIITSDVMLNMQLLNVLYEYQLR 227 (305)
T ss_dssp -HHHHC--------C-CCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred -HHHHHHHhhhcCCC-CCCEEEECChHHHHHHHHHHHHcCCC
Confidence 45556666 66543 45678898888888888888887654
No 267
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=58.62 E-value=58 Score=32.20 Aligned_cols=18 Identities=22% Similarity=0.233 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
-+++.+++|+|||.....
T Consensus 34 ~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEESCGGGTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986544
No 268
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=57.97 E-value=29 Score=40.10 Aligned_cols=82 Identities=24% Similarity=0.212 Sum_probs=63.7
Q ss_pred cCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhh
Q 004900 76 AKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHS 155 (724)
Q Consensus 76 ~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~ 155 (724)
..+.++||+++++..+......|...|+.+..+++......+..+......+. ++|+++|.-. ..| .+
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~--~~VLvaT~~l--~~G--------lD 504 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGH--YDCLVGINLL--REG--------LD 504 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTS--CSEEEESCCC--CTT--------CC
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCC--ceEEEccChh--hcC--------cc
Confidence 36789999999999999999999999999999999999899988888887764 7788887432 112 12
Q ss_pred cCCccEEEEccccc
Q 004900 156 RGLLNLVAIDEAHC 169 (724)
Q Consensus 156 ~~~l~lIVIDEAH~ 169 (724)
...+++||+=+++.
T Consensus 505 ip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 505 IPEVSLVAILDADK 518 (664)
T ss_dssp CTTEEEEEETTTTS
T ss_pred CCCCCEEEEeCCcc
Confidence 22367777777654
No 269
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=57.61 E-value=6.6 Score=33.91 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=32.6
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~ 293 (724)
.+.+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 4567999999988899999999999999999999863
No 270
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=57.40 E-value=6.6 Score=33.39 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=32.0
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCceeeecCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l 292 (724)
++.++||||.+-..+...+..|...|+.+..+.||+
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCH
Confidence 456799999999899999999999999988898886
No 271
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=57.08 E-value=20 Score=38.74 Aligned_cols=59 Identities=14% Similarity=0.133 Sum_probs=52.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 78 ~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
...+||+++++.-+....+.|...|+.+..+++......+..+......+. .+++++|.
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~--~~vLvaT~ 358 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGS--MKVLIATS 358 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSS--CSEEEECG
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEEch
Confidence 345999999999999999999999999999999999999999998888775 77888876
No 272
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=57.02 E-value=17 Score=46.58 Aligned_cols=97 Identities=15% Similarity=0.212 Sum_probs=62.0
Q ss_pred HHHHHHc------CCcEEEEcCCCchHHHHHHH---HHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHH
Q 004900 46 AIQAVLS------GRDCFCLMPTGGGKSMCYQI---PALAKPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQV 116 (724)
Q Consensus 46 aI~ail~------g~dvlv~apTGsGKTl~~~l---pal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~ 116 (724)
.+..++. |+-+.+.+|.|+|||...+- -+..+++.+++|.+--+|-... ++++|+...
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~---------- 1484 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDID---------- 1484 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGG----------
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHH----------
Confidence 4555664 35688999999999976432 2234688999998876664332 666776542
Q ss_pred HHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccccccc
Q 004900 117 KTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 117 ~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~ 172 (724)
++++.-|+.- ...+.....+...+.+++||||..-.+..
T Consensus 1485 ---------------~l~~~~p~~~--e~~l~~~~~~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 ---------------NLLCSQPDTG--EQALEICDALARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp ---------------GCEEECCSSH--HHHHHHHHHHHHHTCCSEEEESCSTTCCC
T ss_pred ---------------HeEEeCCCcH--HHHHHHHHHHHHcCCCCEEEEccHHhCCc
Confidence 2344444322 22344445555567799999999887754
No 273
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=56.99 E-value=87 Score=34.84 Aligned_cols=41 Identities=17% Similarity=0.052 Sum_probs=24.4
Q ss_pred cEEEEcCCCchHHHHHHHHH--H-cCCCeEEEEcC--cHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA--L-AKPGIVLVVSP--LIALMENQV 95 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa--l-~~~~~vLVlsP--l~aL~~qqv 95 (724)
.+++++++|+|||....--+ + ..+.++++|.. .+..+.+|.
T Consensus 103 vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL 148 (504)
T 2j37_W 103 VIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQL 148 (504)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHH
Confidence 36778999999997543222 2 23566766663 344444444
No 274
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=56.75 E-value=6.7 Score=33.19 Aligned_cols=36 Identities=14% Similarity=0.397 Sum_probs=32.0
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCceeeecCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l 292 (724)
++.+++|||.+-..+...+..|...|+.+..+.||+
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~ 90 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGM 90 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccH
Confidence 456899999999899999999999999888898986
No 275
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=56.67 E-value=9.3 Score=42.84 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=23.1
Q ss_pred CCHHHHHHHHH-HHcCCcEEEEcCCCchHHHH
Q 004900 39 FRDKQLDAIQA-VLSGRDCFCLMPTGGGKSMC 69 (724)
Q Consensus 39 lr~~Q~eaI~a-il~g~dvlv~apTGsGKTl~ 69 (724)
+.+.+...+.. +..|..+++++|||+|||..
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 45556665554 44677899999999999974
No 276
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=56.66 E-value=80 Score=34.34 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=24.3
Q ss_pred cEEEEcCCCchHHHHHHH-HHH--cCCCeEEEEc--CcHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI-PAL--AKPGIVLVVS--PLIALMENQV 95 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l-pal--~~~~~vLVls--Pl~aL~~qqv 95 (724)
-++++++.|+|||.+... ... ..++.++++. +.+..+.+|.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL 145 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQL 145 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHH
Confidence 356779999999975433 222 2456666665 4444444443
No 277
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=61.05 E-value=2.4 Score=39.79 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=48.3
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeC
Q 004900 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (724)
Q Consensus 78 ~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~T 137 (724)
.+.+||.++++.-+......|...|+.+..+++.+....+..+......+. .+++++|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~--~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR--VNVLVAT 87 (170)
Confidence 467899999999999888999999999999999988888887777776664 6677666
No 278
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=56.00 E-value=6.3 Score=41.18 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=23.0
Q ss_pred cCCcEEEEcCCCchHHHHH-HHHHHcCCCeEEEEc
Q 004900 52 SGRDCFCLMPTGGGKSMCY-QIPALAKPGIVLVVS 85 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~-~lpal~~~~~vLVls 85 (724)
.|.-+.+++|+|+|||... +|.-+. .|.+++.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~~~v 158 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVLSFA 158 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEECGG
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEEEEe
Confidence 5677889999999999644 344444 67665443
No 279
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=55.33 E-value=10 Score=41.31 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHc--CCcEEEEcCCCchHHHH
Q 004900 39 FRDKQLDAIQAVLS--GRDCFCLMPTGGGKSMC 69 (724)
Q Consensus 39 lr~~Q~eaI~ail~--g~dvlv~apTGsGKTl~ 69 (724)
+.+.+..++..++. |.-+++++|||+|||..
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHH
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 34566677776654 33578999999999964
No 280
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.14 E-value=5.8 Score=43.47 Aligned_cols=60 Identities=15% Similarity=0.126 Sum_probs=35.8
Q ss_pred cccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHH--HcCCcEEEEcCCCchHHHHHHHHH
Q 004900 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAV--LSGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ai--l~g~dvlv~apTGsGKTl~~~lpa 74 (724)
.+...|.+++-.++..+.|++..-+.-.+| +.+..+ --.+-+++.+|+|+|||+..-.-|
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p---~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA 227 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQA---DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVA 227 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCH---HHHHHHCCCCCCEEEEESCTTTTHHHHHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCH---HHHHhCCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 445677888877888777777432110111 111111 112569999999999998654433
No 281
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=55.14 E-value=11 Score=42.21 Aligned_cols=29 Identities=34% Similarity=0.369 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCcEEEEcCCCchHHHHHHH
Q 004900 44 LDAIQAVLSGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 44 ~eaI~ail~g~dvlv~apTGsGKTl~~~l 72 (724)
..++.++..+..+++.+|+|+|||.....
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~LAra 60 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLIARR 60 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHHHHH
Confidence 33445566789999999999999986543
No 282
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=54.97 E-value=12 Score=39.00 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=57.2
Q ss_pred hHHHHhhhHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHhhhcccCCc-chhhHHHHHHHHHhhccChHHHHhhhcCC
Q 004900 549 SDVLRQGSKEKLLNALRQAQQRLRNLTIEFEASAIFLENECYNKYGKSGK-SFYYSQVASTIRWLSTANSIELTNRLGID 627 (724)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 627 (724)
.+.+|+.+++-|.+||....- ....+.+.-|..+|.++|..||.... .-|..++=+-+-=|.-..-.+|..|+-..
T Consensus 145 ~d~~R~k~r~~L~~aL~~~~~---~~~~~~~~~A~~IE~al~~~~~~~~~~~~Yk~k~Rsl~~NLKd~~N~~Lr~~vl~g 221 (309)
T 1pqv_S 145 HHKLRDQVLKALYDVLAKESE---HPPQSILHTAKAIESEMNKVNNCDTNEAAYKARYRIIYSNVISKNNPDLKHKIANG 221 (309)
T ss_pred ChHHHHHHHHHHHHHHhcCCC---ccchhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCcCCChHHHHHHHcC
Confidence 379999999999999964211 11235567899999999999976542 24888888888888877778898887544
No 283
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=54.82 E-value=8.5 Score=42.42 Aligned_cols=71 Identities=11% Similarity=0.162 Sum_probs=49.6
Q ss_pred CceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc-----ccc-c-CCCC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~-----g~G-I-Dip~ 326 (724)
+.++||.|+++.-+.+++..+... ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 568999999999888888777664 899999999986554432221 236799998532 222 3 4566
Q ss_pred cceEEe
Q 004900 327 VRLVCH 332 (724)
Q Consensus 327 V~~VI~ 332 (724)
+++||.
T Consensus 128 ~~~vVi 133 (555)
T 3tbk_A 128 FTLMIF 133 (555)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777773
No 284
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=54.25 E-value=14 Score=38.87 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=47.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 78 PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 78 ~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
.+.+||+++++.-+....+.|...++.+..+++......+..+......+. .+++++|.
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~--~~vlv~T~ 338 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS--SRVLITTD 338 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECS
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC--CcEEEECC
Confidence 568999999999999999999999999999999999999998888887765 67777775
No 285
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=54.13 E-value=9.9 Score=33.49 Aligned_cols=36 Identities=17% Similarity=0.363 Sum_probs=31.2
Q ss_pred ceEEEEe-cccccHHHHHHHHHhCCCceeeecCCCCH
Q 004900 259 TCAIVYC-LERTTCDELSAYLSAGGISCAAYHAGLND 294 (724)
Q Consensus 259 ~~~IIf~-~sr~~~e~La~~L~~~gi~v~~~H~~l~~ 294 (724)
.++|||| .+-..+...+..|...|+.+..|.||+..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 6899999 57778889999999999999999998743
No 286
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=53.90 E-value=23 Score=39.78 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=52.6
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHc---CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~---gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE 139 (724)
....+||+++++.-+......|... ++.+..+++.+....+..+......+. .+||++|.-
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~--~~vLVaT~~ 350 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTDV 350 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECGG
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC--CeEEEEcch
Confidence 3678999999999999999999886 899999999999999999988888775 778887763
No 287
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=53.80 E-value=4.7 Score=39.77 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=38.4
Q ss_pred CceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
+.++||.++++.-+.++++.+... ++.+..++++.....+ ......+..+|+|+|.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp 157 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTP 157 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECH
Confidence 447999999999999999988764 6666666665322211 1223356778999984
No 288
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=53.72 E-value=24 Score=39.31 Aligned_cols=61 Identities=11% Similarity=0.092 Sum_probs=52.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHc---CCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEK---GIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~---gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE 139 (724)
....+||+++++.-+......|... ++.+..+++.+....+..+......+. .+|+++|.-
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~~ 401 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTDV 401 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECGG
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC--CCEEEEcch
Confidence 4679999999999999988888886 889999999999999999998888775 778888763
No 289
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=53.57 E-value=7.8 Score=36.47 Aligned_cols=21 Identities=14% Similarity=0.096 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.|+-+++++|+|+|||...-+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 466788999999999986543
No 290
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=53.30 E-value=80 Score=34.42 Aligned_cols=99 Identities=10% Similarity=-0.046 Sum_probs=68.0
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSR 156 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~ 156 (724)
.++..+|++..+.-+....+.|...+..+..+++.+....+..+......+. .+++++|+.++.+ -.+.
T Consensus 346 ~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~--~~vLv~T~~~~~~---------GiDi 414 (510)
T 2oca_A 346 KDENAFVMFKHVSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK--GIIIVASYGVFST---------GISV 414 (510)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC--SCEEEEEHHHHHH---------SCCC
T ss_pred cCCCeEEEEecHHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC--CCEEEEEcChhhc---------cccc
Confidence 3566666665577777778888888888999999999888888888887765 7788888555432 1234
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCC
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLP 192 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p 192 (724)
..+++||+..+. |+ ....+..+++.-+..+
T Consensus 415 p~v~~vi~~~~~----~s--~~~~~Q~~GR~gR~g~ 444 (510)
T 2oca_A 415 KNLHHVVLAHGV----KS--KIIVLQTIGRVLRKHG 444 (510)
T ss_dssp CSEEEEEESSCC----CS--CCHHHHHHHHHHTTTC
T ss_pred ccCcEEEEeCCC----CC--HHHHHHHHhcccccCC
Confidence 447888887765 33 3344556676655443
No 291
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=52.82 E-value=34 Score=36.29 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=49.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecc--------cchHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSS--------TQTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s--------~~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
.+.++||.++++.-+....+.|...|+.+..+++ ++....+..+......+. .+++++|.
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~--~~vLv~T~ 427 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE--FNVLVATS 427 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS--CSEEEECG
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC--ceEEEECC
Confidence 5789999999999999999999999999999998 777788888888887765 77888873
No 292
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=52.74 E-value=22 Score=37.05 Aligned_cols=55 Identities=20% Similarity=0.133 Sum_probs=42.7
Q ss_pred CCceEEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
.+.++||.|+++.-+.++++.+.. .++.+..++|+.+..+....+. ..+|+|+|.
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~ 146 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTP 146 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECH
Confidence 355899999999999998888765 3678899999998766554443 357898884
No 293
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=52.59 E-value=15 Score=43.33 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=47.6
Q ss_pred CceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc-----ccc-c-CCCC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~-----g~G-I-Dip~ 326 (724)
+.++||.|+++.-+.+++..+... ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 678999999999999988887764 899999999997665433221 357899999531 222 3 4566
Q ss_pred cceEEe
Q 004900 327 VRLVCH 332 (724)
Q Consensus 327 V~~VI~ 332 (724)
+++||.
T Consensus 372 ~~~iVi 377 (797)
T 4a2q_A 372 FTLMIF 377 (797)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777773
No 294
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.85 E-value=9.6 Score=41.82 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=40.5
Q ss_pred cccccCCCCCchHHHHHHHHHHcCCCCCCHHH-HHHHHHHH--cCCcEEEEcCCCchHHHHHHHHHHcCCCeEEEE
Q 004900 12 SQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQ-LDAIQAVL--SGRDCFCLMPTGGGKSMCYQIPALAKPGIVLVV 84 (724)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q-~eaI~ail--~g~dvlv~apTGsGKTl~~~lpal~~~~~vLVl 84 (724)
.+...|.+++-.++..+.|++..-+ |.. -+.+...- -.+.+|+.+|+|+|||+..-.-+-..+...+.+
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~----pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVL----PMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHH----HHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHH----HHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 4566788888888888888774211 111 01111111 136799999999999986544333333333333
No 295
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=51.83 E-value=9.3 Score=32.93 Aligned_cols=36 Identities=19% Similarity=0.413 Sum_probs=31.4
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCceeeecCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGL 292 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l 292 (724)
++.+++|||.+-..+...+..|.+.|+.+..+.||+
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~ 90 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGM 90 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChH
Confidence 456899999998889999999999999988888876
No 296
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=51.83 E-value=31 Score=41.69 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=53.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHH-cCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeC
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKE-KGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~-~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~T 137 (724)
.+.++||+++++.-+......|.. .|+++..+++.+....+..+......+...+++|++|
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 578999999999999988888984 6999999999999999999999888876568898888
No 297
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=51.48 E-value=9.1 Score=40.72 Aligned_cols=21 Identities=29% Similarity=0.208 Sum_probs=17.8
Q ss_pred HHcCCcEEEEcCCCchHHHHH
Q 004900 50 VLSGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 50 il~g~dvlv~apTGsGKTl~~ 70 (724)
+..|..+++++|||+|||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 447889999999999999754
No 298
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=51.30 E-value=13 Score=45.52 Aligned_cols=73 Identities=8% Similarity=0.129 Sum_probs=55.6
Q ss_pred CceEEEEecccccHHHHHHHHHhC----CC----ceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cccccC-CCCc
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG----GI----SCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FGMGID-RKDV 327 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~----gi----~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a-~g~GID-ip~V 327 (724)
+.++||.++|+.-+.++++.+... ++ .+..+||+.+..++....+.+.+ .+|+|+|.- +-.-+. +.++
T Consensus 99 ~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l 176 (1054)
T 1gku_B 99 GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHF 176 (1054)
T ss_dssp SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCC
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccC
Confidence 467999999999999998888753 56 78999999999888777777777 899999963 111111 4467
Q ss_pred ceEEe
Q 004900 328 RLVCH 332 (724)
Q Consensus 328 ~~VI~ 332 (724)
++||.
T Consensus 177 ~~lVi 181 (1054)
T 1gku_B 177 DFIFV 181 (1054)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77773
No 299
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=51.19 E-value=48 Score=33.74 Aligned_cols=32 Identities=19% Similarity=0.134 Sum_probs=20.1
Q ss_pred cEEEEcCCCchHHHHHHHHHHcCCCeEEEEcC
Q 004900 55 DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSP 86 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpal~~~~~vLVlsP 86 (724)
-+++.+|+|+|||...-.-+-......++|+.
T Consensus 35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 47889999999998654332222234456654
No 300
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=51.11 E-value=1.8e+02 Score=28.05 Aligned_cols=71 Identities=13% Similarity=0.149 Sum_probs=49.7
Q ss_pred cCCCCCCHHHHHHHHHHHc--C-C--cEEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCc
Q 004900 34 FGHAQFRDKQLDAIQAVLS--G-R--DCFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLIALMENQVIGLKEKGIA 104 (724)
Q Consensus 34 fG~~~lr~~Q~eaI~ail~--g-~--dvlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~ 104 (724)
.|+....|.+.+.+..+.. + + .-++-..||+|=+..++...+..++.++.|=.....+..-.+.+...|+.
T Consensus 32 ~~~p~i~~~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~ 107 (221)
T 3dr5_A 32 FGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYS 107 (221)
T ss_dssp TTCCCCCHHHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCC
T ss_pred cCCCCCCHHHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 5888889999988877763 2 2 26778999999988776665544667666666666655555556666654
No 301
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=51.09 E-value=10 Score=37.76 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=18.2
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpa 74 (724)
.+..+++.+|+|+|||.....-+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHHHHH
Confidence 45789999999999998654433
No 302
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=50.97 E-value=1.3e+02 Score=29.48 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhcCC--ceEEEEecccccHHHHHHHHHhCCC
Q 004900 243 DDAYADLCSVLKANGD--TCAIVYCLERTTCDELSAYLSAGGI 283 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~--~~~IIf~~sr~~~e~La~~L~~~gi 283 (724)
......+.++|...+. ....|||.+...+.-+...|++.|+
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~ai~~~~d~~a~g~~~al~~~g~ 215 (291)
T 3l49_A 173 QSAYSNVTDMLTKYPNEGDVGAIWACWDVPMIGATQALQAAGR 215 (291)
T ss_dssp HHHHHHHHHHHHHCCSTTSCCEEEESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCcCCcCEEEECCCchHHHHHHHHHHcCC
Confidence 4456677788887651 4567899999999999999999887
No 303
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=50.97 E-value=8.9 Score=36.63 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=17.5
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.++.+++++|+|+|||.....
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 567889999999999987544
No 304
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=50.84 E-value=7.2 Score=39.76 Aligned_cols=17 Identities=35% Similarity=0.430 Sum_probs=14.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (724)
.+++.+|+|+|||....
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 68999999999998654
No 305
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=50.38 E-value=14 Score=39.39 Aligned_cols=38 Identities=18% Similarity=0.305 Sum_probs=26.6
Q ss_pred cCCcEEEEcCCCchHHHHHHHH---HHcCCCeEEEEcCcHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIP---ALAKPGIVLVVSPLIA 89 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lp---al~~~~~vLVlsPl~a 89 (724)
.+.++++++|||+|||.....- ....+..++|+=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 4568999999999999753221 2235677777777654
No 306
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=50.19 E-value=9.3 Score=31.87 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=30.9
Q ss_pred ceEEEEecccccHHHHHHHHHhCCCceeeecCCCC
Q 004900 259 TCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~ 293 (724)
.+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 67999999988899999999999998888888874
No 307
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=50.15 E-value=7.5 Score=40.07 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=45.1
Q ss_pred CceEEEEecccccHHHHHHHHHhC-----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccccc-------cccCCC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG-----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAFG-------MGIDRK 325 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~-----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~g-------~GIDip 325 (724)
...+||.++|+.-+.+++..+... ++.+..++++.....+ .....+|||+|.--- ..+++.
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~ 234 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGG
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChh
Confidence 346999999999999988887763 4566777776543211 135567999996421 235566
Q ss_pred CcceEEe
Q 004900 326 DVRLVCH 332 (724)
Q Consensus 326 ~V~~VI~ 332 (724)
++++||.
T Consensus 235 ~l~~lVl 241 (300)
T 3fmo_B 235 KIKVFVL 241 (300)
T ss_dssp GCSEEEE
T ss_pred hceEEEE
Confidence 6666663
No 308
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=50.11 E-value=9.3 Score=36.67 Aligned_cols=20 Identities=30% Similarity=0.391 Sum_probs=15.4
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (724)
.|+-+.+++|+|+|||...-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778999999999997543
No 309
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=49.75 E-value=9 Score=40.62 Aligned_cols=18 Identities=28% Similarity=0.157 Sum_probs=14.6
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
+-+++++|||+|||....
T Consensus 41 ~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357889999999998644
No 310
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=49.37 E-value=17 Score=36.70 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=29.6
Q ss_pred cccccccccccCCCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH
Q 004900 6 LAMQSTSQTQKNKPLHEKEALVKLLRWHFGHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 6 ~p~~~~~~~~~~~~~~~~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~ 71 (724)
.||........|.++.-.+.....|.....- -....+++.+|+|+|||....
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT--------------TCCCCEEEESSSSSSHHHHHH
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC--------------CCCCeEEEECcCCcCHHHHHH
Confidence 3444444444455555555665555553211 011259999999999997543
No 311
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=49.07 E-value=2e+02 Score=28.18 Aligned_cols=41 Identities=5% Similarity=-0.109 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
...+..+.++|... ..+..|||.+...+.-+...|++.|+.
T Consensus 182 ~~~~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 222 (293)
T 2iks_A 182 EAAAQLFEKWLETH-PMPQALFTTSFALLQGVMDVTLRRDGK 222 (293)
T ss_dssp HHHHHHHHHHTTTS-CCCSEEEESSHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHhcC-CCCCEEEECChHHHHHHHHHHHHcCCC
Confidence 34455666676654 345688898888788888888776543
No 312
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=48.86 E-value=10 Score=36.69 Aligned_cols=21 Identities=24% Similarity=0.211 Sum_probs=16.4
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.|+-+++++|+|+|||.....
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHHH
Confidence 355678899999999986544
No 313
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=48.61 E-value=26 Score=28.36 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=29.5
Q ss_pred cCCceEEEEecccccHHHHHHHHHhCCCc-eeeecCCCC
Q 004900 256 NGDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (724)
Q Consensus 256 ~~~~~~IIf~~sr~~~e~La~~L~~~gi~-v~~~H~~l~ 293 (724)
.++.+++|||.+-..+...+..|...|+. +..+ ||+.
T Consensus 39 ~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 39 DKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp CTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 34578999999988899999999999986 4455 7753
No 314
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=48.45 E-value=8.4 Score=39.05 Aligned_cols=20 Identities=30% Similarity=0.215 Sum_probs=16.2
Q ss_pred HcCCcEEEEcCCCchHHHHH
Q 004900 51 LSGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~ 70 (724)
..|.-+++++|||+|||...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 35667889999999999753
No 315
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=48.45 E-value=10 Score=35.37 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
++.+++++++|+|||.....
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 45788999999999986554
No 316
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=47.53 E-value=12 Score=39.37 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=13.6
Q ss_pred EEEEcCCCchHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 56 vlv~apTGsGKTl~~~l 72 (724)
+++.+|||+|||....-
T Consensus 13 i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 13 IFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCccCHHHHHHH
Confidence 67799999999976543
No 317
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=47.05 E-value=11 Score=39.50 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
-+++.+|||+|||....-
T Consensus 5 ~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHH
Confidence 467899999999986543
No 318
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=46.59 E-value=19 Score=32.79 Aligned_cols=37 Identities=14% Similarity=0.194 Sum_probs=31.0
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCC-ceeeecCCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGLN 293 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi-~v~~~H~~l~ 293 (724)
.+.++||||.+-..+...+..|...|+ .+..|.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 356799999998888899999999999 4889999984
No 319
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=46.52 E-value=1.6e+02 Score=29.03 Aligned_cols=41 Identities=10% Similarity=0.067 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
......+.++|...+ .+.-|||.+...+..+...|++.|+.
T Consensus 173 ~~~~~~~~~~l~~~~-~~~ai~~~~d~~A~g~~~al~~~g~~ 213 (288)
T 3gv0_A 173 EKIRDFGQRLMQSSD-RPDGIVSISGSSTIALVAGFEAAGVK 213 (288)
T ss_dssp HHHHHHHHHHTTSSS-CCSEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHhCCC-CCcEEEEcCcHHHHHHHHHHHHcCCC
Confidence 344566667776543 45678888888888888888877653
No 320
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=46.29 E-value=2.2e+02 Score=28.76 Aligned_cols=40 Identities=3% Similarity=-0.112 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
+.-+..+.++|...+ +.-|||.+...+.-+...|++.|+.
T Consensus 217 ~~~~~~~~~ll~~~~--~~ai~~~nd~~A~g~~~al~~~G~~ 256 (333)
T 3jvd_A 217 ESGEEMAQVVFNNGL--PDALIVASPRLMAGVMRAFTRLNVR 256 (333)
T ss_dssp HHHHHHHHHHHHTCC--CSEEEECCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCC--CcEEEECCHHHHHHHHHHHHHcCCC
Confidence 455667777887655 6788898888888888888887654
No 321
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=46.11 E-value=2.3e+02 Score=27.91 Aligned_cols=178 Identities=11% Similarity=0.077 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccc
Q 004900 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (724)
Q Consensus 89 aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH 168 (724)
.++....+.+.+.|....+..... ..........+.... ++-++..|..... ..+..+.. ..+-+|++|...
T Consensus 27 ~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~--vdGiIi~~~~~~~-~~~~~l~~----~~iPvV~~~~~~ 98 (294)
T 3qk7_A 27 EMISWIGIELGKRGLDLLLIPDEP-GEKYQSLIHLVETRR--VDALIVAHTQPED-FRLQYLQK----QNFPFLALGRSH 98 (294)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECT-TCCCHHHHHHHHHTC--CSEEEECSCCSSC-HHHHHHHH----TTCCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCC-hhhHHHHHHHHHcCC--CCEEEEeCCCCCh-HHHHHHHh----CCCCEEEECCCC
Confidence 344444455666777766655432 111122223333222 4444444433222 22333322 236678887631
Q ss_pred c---cccCCCCC-hHHHHHHHHHHhhCCCCCEEEEeecCChhhHH----HHHHhhccCCCeEeeccCCCCceEEEEEecc
Q 004900 169 C---ISSWGHDF-RPSYRKLSSLRNYLPDVPILALTATAAPKVQK----DVMESLCLQNPLVLKSSFNRPNLFYEVRYKD 240 (724)
Q Consensus 169 ~---l~~~G~dF-rp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~----di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~ 240 (724)
. +...+.|. ...+.....|.. .....+.+++......... -+.+.+.-... ... +... +....
T Consensus 99 ~~~~~~~V~~D~~~~~~~a~~~L~~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~-----~~~-~~~~--~~~~~ 169 (294)
T 3qk7_A 99 LPKPYAWFDFDNHAGASLAVKRLLE-LGHQRIAFVSTDARISYVDQRLQGYVQTMSEAGL-----MPL-AGYL--QKADP 169 (294)
T ss_dssp CSSCCEEEEECHHHHHHHHHHHHHH-TTCCCEEEEEESSCCHHHHHHHHHHHHHHHTTTC-----CCC-TTCE--EEECS
T ss_pred CCCCCCEEEcChHHHHHHHHHHHHH-CCCceEEEEeCCcccchHHHHHHHHHHHHHHCCC-----CCC-hhHe--ecCCC
Confidence 1 11112222 233333334444 4667788887765432211 11122211110 000 1111 11112
Q ss_pred chhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 241 LLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 241 ~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
..+.-+..+.++|...+ .+.-|||.+...+.-+...|++.|+.
T Consensus 170 ~~~~~~~~~~~~l~~~~-~~~ai~~~nd~~A~g~~~al~~~G~~ 212 (294)
T 3qk7_A 170 TRPGGYLAASRLLALEV-PPTAIITDCNMLGDGVASALDKAGLL 212 (294)
T ss_dssp SHHHHHHHHHHHHHSSS-CCSEEEESSHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHcCCC-CCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 23455667777887643 45788998888888888888887654
No 322
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=45.95 E-value=17 Score=33.59 Aligned_cols=21 Identities=19% Similarity=-0.034 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lp 73 (724)
++-+++.+++|+|||.+...-
T Consensus 3 ~~~i~l~G~~GsGKST~a~~L 23 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCL 23 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 455789999999999876543
No 323
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=45.90 E-value=10 Score=33.51 Aligned_cols=37 Identities=16% Similarity=0.126 Sum_probs=31.4
Q ss_pred CCceEEEEeccccc--HHHHHHHHHhCCCceeeecCCCC
Q 004900 257 GDTCAIVYCLERTT--CDELSAYLSAGGISCAAYHAGLN 293 (724)
Q Consensus 257 ~~~~~IIf~~sr~~--~e~La~~L~~~gi~v~~~H~~l~ 293 (724)
++.++||||.+-.. +...+..|...|+.+..+.||+.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 35679999998877 78999999999999888888863
No 324
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=45.87 E-value=11 Score=39.75 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.5
Q ss_pred HHcCCcEEEEcCCCchHHHHH
Q 004900 50 VLSGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 50 il~g~dvlv~apTGsGKTl~~ 70 (724)
+..|..+++++|||+|||...
T Consensus 168 i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHH
Confidence 346889999999999999743
No 325
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=45.68 E-value=10 Score=39.66 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
+.+++.+|+|+|||.....
T Consensus 71 ~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4799999999999986543
No 326
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=45.64 E-value=11 Score=35.75 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=17.2
Q ss_pred HcCCcEEEEcCCCchHHHHHHH
Q 004900 51 LSGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~~l 72 (724)
..|.-+++++|+|+|||...-+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3567788999999999976543
No 327
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=45.61 E-value=19 Score=33.00 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=17.2
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpa 74 (724)
+.-+++.+|.|+|||...-+-+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La 25 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLA 25 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHH
Confidence 4568899999999998655433
No 328
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=45.46 E-value=12 Score=35.37 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=16.2
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (724)
.|.-+.+++|+|+|||...-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46667889999999997654
No 329
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=45.43 E-value=12 Score=32.09 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=31.0
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCc-eeeecCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGL 292 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~-v~~~H~~l 292 (724)
.+.++||||.+-..+...+..|...|+. +..+.||+
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~ 87 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 87 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCH
Confidence 3567999999988899999999999995 78888886
No 330
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=45.05 E-value=1.2e+02 Score=30.95 Aligned_cols=41 Identities=17% Similarity=0.029 Sum_probs=23.9
Q ss_pred cEEEEcCCCchHHHHHH-HHHH--cCCCeEEEEc--CcHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS--PLIALMENQV 95 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~-lpal--~~~~~vLVls--Pl~aL~~qqv 95 (724)
-+++++++|+|||.... +... ..+++++++. +.+..+.+|.
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql 145 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQL 145 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHH
Confidence 35678999999996543 3222 2466666664 3344444443
No 331
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=44.99 E-value=1e+02 Score=34.16 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=23.3
Q ss_pred cCCcEEEEcCCCchHHHHHH-HHHH--cCCCeEEEEcCc
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVSPL 87 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~-lpal--~~~~~vLVlsPl 87 (724)
.|.-+++.+|+|+|||.... +..+ ..+..++++++-
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~e 318 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE 318 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 45667889999999996433 2222 244567777654
No 332
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=44.06 E-value=14 Score=39.33 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=19.1
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.++.++.|.++ ++-+.||+|||.+.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 45667788774 55679999999864
No 333
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=44.05 E-value=9.9 Score=34.53 Aligned_cols=18 Identities=22% Similarity=0.163 Sum_probs=14.4
Q ss_pred EEEEcCCCchHHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lp 73 (724)
+++.+|+|+|||.....-
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 678999999999865443
No 334
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=44.02 E-value=41 Score=39.88 Aligned_cols=69 Identities=6% Similarity=0.111 Sum_probs=51.5
Q ss_pred CCceEEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cc------------
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG------------ 319 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a-~g------------ 319 (724)
.+..++|.|+|+.-|.+.++.+.. .|+++..+.||++..+|.... ..+|+|+|+- +|
T Consensus 123 ~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~~~~ 196 (844)
T 1tf5_A 123 TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMVLYK 196 (844)
T ss_dssp TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSG
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhhcch
Confidence 355799999999999888777654 589999999999987766543 3689999962 21
Q ss_pred cccCCCCcceEE
Q 004900 320 MGIDRKDVRLVC 331 (724)
Q Consensus 320 ~GIDip~V~~VI 331 (724)
..++...++++|
T Consensus 197 ~~l~lr~~~~lV 208 (844)
T 1tf5_A 197 EQMVQRPLHFAV 208 (844)
T ss_dssp GGCCCCCCCEEE
T ss_pred hhhcccCCCEEE
Confidence 125566777766
No 335
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=43.80 E-value=15 Score=34.15 Aligned_cols=21 Identities=14% Similarity=-0.047 Sum_probs=17.2
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.++.+++.+++|+|||.....
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 456799999999999986544
No 336
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=43.45 E-value=16 Score=33.01 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=31.7
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCC-ceeeecCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGI-SCAAYHAGL 292 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi-~v~~~H~~l 292 (724)
.+.++||||.+-..+...+..|...|+ .+..+.||+
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~ 117 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGM 117 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcH
Confidence 456899999999899999999999998 588899996
No 337
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=43.43 E-value=11 Score=35.32 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.|.-+++++|.|+|||...-+
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~ 28 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEA 28 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 466788999999999986543
No 338
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=43.34 E-value=20 Score=36.57 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHH-HHHHHHcCC-----cEEEEcCCCchHHHHHH
Q 004900 23 KEALVKLLRWHFGHAQFRDKQLD-AIQAVLSGR-----DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 23 ~~~l~~~L~~~fG~~~lr~~Q~e-aI~ail~g~-----dvlv~apTGsGKTl~~~ 71 (724)
...+.+.|+- -|+. +.+.. ++..+++|+ -+++.+|.|+|||+.+.
T Consensus 72 ~n~i~~~l~~-qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 72 SNRIYKILEL-NGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp GCHHHHHHHH-TTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred hHHHHHHHHH-cCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4567777754 3655 66533 567777764 48889999999998765
No 339
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=43.24 E-value=14 Score=33.74 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=31.7
Q ss_pred CCceEEEEeccc--ccHHHHHHHHHhCCCceeeecCCCC
Q 004900 257 GDTCAIVYCLER--TTCDELSAYLSAGGISCAAYHAGLN 293 (724)
Q Consensus 257 ~~~~~IIf~~sr--~~~e~La~~L~~~gi~v~~~H~~l~ 293 (724)
.+.++||||.+- ..+...+..|...|+.+..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 356799999987 5888999999999999999999863
No 340
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=43.14 E-value=16 Score=38.36 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=19.3
Q ss_pred HHHHHHcCCc--EEEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~d--vlv~apTGsGKTl~~ 70 (724)
.+..++.|.+ +++-+.||+|||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 4566778877 466789999999874
No 341
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=43.08 E-value=12 Score=37.39 Aligned_cols=15 Identities=27% Similarity=0.220 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHHH
Q 004900 56 CFCLMPTGGGKSMCY 70 (724)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (724)
+++.+|||+|||...
T Consensus 4 i~I~G~~GSGKSTla 18 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 578999999999854
No 342
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=43.08 E-value=15 Score=35.80 Aligned_cols=21 Identities=19% Similarity=0.077 Sum_probs=16.8
Q ss_pred HcCCcEEEEcCCCchHHHHHH
Q 004900 51 LSGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~~ 71 (724)
-.|+-+.+++|+|+|||...-
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 367788999999999997543
No 343
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=43.03 E-value=31 Score=40.89 Aligned_cols=55 Identities=9% Similarity=0.057 Sum_probs=43.6
Q ss_pred CCceEEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a 317 (724)
.+..++|.|+|+.-|.+.++.+.. .|+++..+.||++...|.... .++|+|+|+.
T Consensus 114 ~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpg 172 (853)
T 2fsf_A 114 TGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNN 172 (853)
T ss_dssp TSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHH
T ss_pred cCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCc
Confidence 345799999999988888776654 589999999999987665443 3789999974
No 344
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=42.51 E-value=15 Score=34.56 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~ 71 (724)
+-+.+++|+|+|||...-
T Consensus 2 ~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 446789999999997643
No 345
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=42.46 E-value=28 Score=46.75 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHcCCCCCCHHH-HHHH---HHHHcCCcEEEEcCCCchHHHHHHHHH
Q 004900 23 KEALVKLLRWHFGHAQFRDKQ-LDAI---QAVLSGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 23 ~~~l~~~L~~~fG~~~lr~~Q-~eaI---~ail~g~dvlv~apTGsGKTl~~~lpa 74 (724)
.+.+.+.+++ .|+. +.+.+ .+++ +.+...+.+++++|||+|||.++.+.+
T Consensus 891 ~~~i~~~~~~-~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~La 944 (2695)
T 4akg_A 891 VQCLKDAGQR-SGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKTVI 944 (2695)
T ss_dssp HHHHHHHHHH-HTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHHHH
Confidence 3445555555 4665 45544 2233 334456789999999999999886543
No 346
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=42.01 E-value=16 Score=38.49 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.5
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
-+++++|||+|||.....
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999986543
No 347
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=41.91 E-value=21 Score=33.35 Aligned_cols=20 Identities=30% Similarity=0.197 Sum_probs=15.2
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa 74 (724)
-+++++|+|+|||...-+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHh
Confidence 36789999999998654433
No 348
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=41.87 E-value=15 Score=35.67 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=16.5
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (724)
.|+-+++++|+|+|||....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 56778899999999997543
No 349
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=41.60 E-value=23 Score=30.45 Aligned_cols=38 Identities=8% Similarity=0.082 Sum_probs=32.2
Q ss_pred cCCceEEEEecccccHHHHHHHHHhCCCceeeecCCCC
Q 004900 256 NGDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLN 293 (724)
Q Consensus 256 ~~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~ 293 (724)
.++.++||||.+-..+...+..|...|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 35678999999988899999999999987677889873
No 350
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=41.59 E-value=15 Score=34.45 Aligned_cols=23 Identities=22% Similarity=0.263 Sum_probs=17.8
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpa 74 (724)
.+..+++.+++|+|||.+...-+
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999998755433
No 351
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=41.47 E-value=12 Score=36.65 Aligned_cols=18 Identities=28% Similarity=0.230 Sum_probs=14.6
Q ss_pred cCCcEEEEcCCCchHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMC 69 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~ 69 (724)
.|+-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345688999999999864
No 352
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=41.28 E-value=21 Score=36.38 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
..+++.+|+|+|||.....
T Consensus 39 ~~vll~G~~GtGKT~la~~ 57 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHV 57 (324)
T ss_dssp CCCEEECCTTCCCHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 6799999999999986543
No 353
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=41.10 E-value=17 Score=34.78 Aligned_cols=21 Identities=19% Similarity=0.119 Sum_probs=17.1
Q ss_pred HcCCcEEEEcCCCchHHHHHH
Q 004900 51 LSGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~~ 71 (724)
..|+-+++++|+|+|||....
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~ 30 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIK 30 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHH
Confidence 356788999999999997543
No 354
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=40.99 E-value=15 Score=34.03 Aligned_cols=20 Identities=15% Similarity=0.142 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
+.-+++.++.|+|||.....
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 56688999999999986543
No 355
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=40.93 E-value=14 Score=31.55 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=31.6
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCc-eeeecCCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~-v~~~H~~l~ 293 (724)
++.+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 94 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFE 94 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHH
Confidence 4567999999988899999999999985 778888864
No 356
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=40.81 E-value=2.6e+02 Score=27.13 Aligned_cols=178 Identities=9% Similarity=0.046 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccc-
Q 004900 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC- 169 (724)
Q Consensus 91 ~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~- 169 (724)
+....+.+.+.|....+................+.... ++-++..|..... .....+.. ..+-+|++|-...
T Consensus 32 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--vdgiIi~~~~~~~-~~~~~l~~----~~iPvV~~~~~~~~ 104 (292)
T 3k4h_A 32 IRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQ--IGGIILLYSREND-RIIQYLHE----QNFPFVLIGKPYDR 104 (292)
T ss_dssp HHHHHHHHHHTTCEEEECCCCSHHHHHHHHHHHHHTTC--CCEEEESCCBTTC-HHHHHHHH----TTCCEEEESCCSSC
T ss_pred HHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEEeCCCCCh-HHHHHHHH----CCCCEEEECCCCCC
Confidence 33344456667777666555444333333444444332 4445444432222 22222222 2366777774321
Q ss_pred ---cccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHH----HHHHhhccCCCeEeeccCCCCceEEEEEeccch
Q 004900 170 ---ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK----DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (724)
Q Consensus 170 ---l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~----di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~ 242 (724)
+...+.|....-..+...........+.+++......... -+.+.+.-.... . .+.... ......
T Consensus 105 ~~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g~~-----~-~~~~~~--~~~~~~ 176 (292)
T 3k4h_A 105 KDEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIV-----L-PKEYIL--HFDFSR 176 (292)
T ss_dssp TTTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHHHHHHHHHHHHTTCC-----C-CGGGEE--ECCSSH
T ss_pred CCCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHHHHHHHHHHHHcCCC-----C-ChheEE--ecCCCH
Confidence 2222233333323333333334566788887765432211 111222111110 0 011111 111222
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
...+..+.++|...+ .+.-|||.+...+..+...|++.|+.
T Consensus 177 ~~~~~~~~~~l~~~~-~~~ai~~~~d~~a~g~~~al~~~g~~ 217 (292)
T 3k4h_A 177 ESGQQAVEELMGLQQ-PPTAIMATDDLIGLGVLSALSKKGFV 217 (292)
T ss_dssp HHHHHHHHHHHTSSS-CCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC-CCcEEEEcChHHHHHHHHHHHHhCCC
Confidence 445667777776643 45678888888888888888887654
No 357
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=40.73 E-value=18 Score=38.61 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=19.0
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.+..++.|.++ ++-+.||+|||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceEE
Confidence 45567788764 56789999999874
No 358
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=40.68 E-value=24 Score=36.50 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=29.7
Q ss_pred cccccccccCCCCCchHHHHHHHHHHc-CCCCCCHHHHHHHHHHHcCCcEEEEcCCCchHHHHHH
Q 004900 8 MQSTSQTQKNKPLHEKEALVKLLRWHF-GHAQFRDKQLDAIQAVLSGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~L~~~f-G~~~lr~~Q~eaI~ail~g~dvlv~apTGsGKTl~~~ 71 (724)
|........|.++...++....|+... .. -....+++.+|+|+|||....
T Consensus 4 w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~--------------~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 4 WVDKYRPKSLNALSHNEELTNFLKSLSDQP--------------RDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTCT--------------TCCCCEEEECSTTSSHHHHHH
T ss_pred chhccCCCCHHHhcCCHHHHHHHHHHHhhC--------------CCCCeEEEECCCCCCHHHHHH
Confidence 333334444555555666666666532 10 022349999999999997654
No 359
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=40.59 E-value=19 Score=38.33 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=18.9
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.+..++.|.++ ++-+.||+|||.+.
T Consensus 81 lv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 81 LIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 44567788764 56779999999864
No 360
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=40.57 E-value=16 Score=35.00 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=16.9
Q ss_pred HHHcCCcEEEEcCCCchHHHHHH
Q 004900 49 AVLSGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 49 ail~g~dvlv~apTGsGKTl~~~ 71 (724)
.+..|.-+.+++|+|+|||...-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 45677888899999999997553
No 361
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=40.45 E-value=17 Score=38.56 Aligned_cols=25 Identities=32% Similarity=0.570 Sum_probs=19.0
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.+..++.|.++ ++-+.||+|||.+.
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 45566788764 56789999999874
No 362
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=40.44 E-value=17 Score=32.57 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=31.7
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCc-eeeecCCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~-v~~~H~~l~ 293 (724)
.+.++||||.+-..+...+..|...|+. +..|.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4567999999988899999999999985 888889863
No 363
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=40.43 E-value=19 Score=38.16 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=18.9
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.+..++.|.++ ++-+.||+|||.+.
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEee
Confidence 45566788775 56779999999874
No 364
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=40.28 E-value=15 Score=33.38 Aligned_cols=18 Identities=17% Similarity=-0.241 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
-+++.++.|+|||.....
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 367899999999986543
No 365
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=40.02 E-value=53 Score=39.21 Aligned_cols=70 Identities=10% Similarity=0.135 Sum_probs=51.7
Q ss_pred cCCceEEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-cc-----c-----
Q 004900 256 NGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-FG-----M----- 320 (724)
Q Consensus 256 ~~~~~~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a-~g-----~----- 320 (724)
..+..++|.|+|+.-|.+.++.+.. .|+++..+.||++..+|.... .++|+++|+. +| .
T Consensus 150 L~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~ 223 (922)
T 1nkt_A 150 LAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHS 223 (922)
T ss_dssp TTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSS
T ss_pred HhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhcc
Confidence 3456799999999988887777654 599999999999988776544 2689999963 21 1
Q ss_pred --ccCCCCcceEE
Q 004900 321 --GIDRKDVRLVC 331 (724)
Q Consensus 321 --GIDip~V~~VI 331 (724)
.++...+.++|
T Consensus 224 ~~~l~lr~l~~lI 236 (922)
T 1nkt_A 224 LDDLVQRGHHYAI 236 (922)
T ss_dssp GGGCCCCCCCEEE
T ss_pred HhhhccCCCCEEE
Confidence 35556677766
No 366
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=39.90 E-value=15 Score=32.67 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=31.8
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCc-eeeecCCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~-v~~~H~~l~ 293 (724)
.+.++||||.+-..+...+..|...|+. +..|.||+.
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 118 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYS 118 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4568999999988899999999999985 888999973
No 367
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=39.75 E-value=20 Score=37.80 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=20.5
Q ss_pred HHHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 45 eaI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
..+..++.|.++ ++-+.||+|||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 466778899874 56789999999864
No 368
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=39.72 E-value=18 Score=38.56 Aligned_cols=25 Identities=32% Similarity=0.558 Sum_probs=18.6
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.+..++.|.++ ++.+.||+|||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 72 TVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCCcceEEEECCCCCCcceEe
Confidence 34556788764 56789999999864
No 369
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=39.65 E-value=15 Score=34.71 Aligned_cols=57 Identities=7% Similarity=-0.007 Sum_probs=35.1
Q ss_pred CCceEEEEecccccHHH-HHHHHHh---CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q 004900 257 GDTCAIVYCLERTTCDE-LSAYLSA---GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~-La~~L~~---~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a 317 (724)
...++||.|+++.-+++ +.+.+.. .++.+..++|+.....+...+. +..+|+|+|..
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~~ 141 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTAQ 141 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEHH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECHH
Confidence 35689999999988877 5555544 3678888888765332221111 24678888853
No 370
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=39.55 E-value=63 Score=28.14 Aligned_cols=50 Identities=14% Similarity=0.277 Sum_probs=0.0
Q ss_pred EEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceE
Q 004900 262 IVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQV 311 (724)
Q Consensus 262 IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~V 311 (724)
+||....+-..++...++..|+.+..++++.+.+.|..-++.|....++|
T Consensus 6 vvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekqgvdv 55 (162)
T 2l82_A 6 VVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQGVDV 55 (162)
T ss_dssp EEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTTTCEE
T ss_pred EEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHcCCce
No 371
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=39.51 E-value=37 Score=36.76 Aligned_cols=57 Identities=16% Similarity=0.047 Sum_probs=44.7
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE 139 (724)
..+.+||++|++.-++...+.|+..++++..+++. .+..+......+. .+++++|..
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g~--~~vLVaT~v 226 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSEK--WDFVITTDI 226 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHSC--CSEEEECGG
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCCC--CeEEEECch
Confidence 36789999999999999999999999999999875 3344555566664 778888763
No 372
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=39.44 E-value=20 Score=36.13 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=19.1
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpa 74 (724)
.|..+++++++|+|||....+-+
T Consensus 47 ~g~~i~l~G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 47 NGRSMYLVGMMGSGKTTVGKIMA 69 (250)
T ss_dssp TTCCEEEECSTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 48899999999999998765443
No 373
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=39.37 E-value=29 Score=34.18 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHcCCCCCCHHHHHHHHHHHcC----CcEEEEcCCCchHHHHH
Q 004900 23 KEALVKLLRWHFGHAQFRDKQLDAIQAVLSG----RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 23 ~~~l~~~L~~~fG~~~lr~~Q~eaI~ail~g----~dvlv~apTGsGKTl~~ 70 (724)
...+.+.|+-. |+ .+-.+ ...+..++++ +.+++.+|.|+|||..+
T Consensus 27 w~~I~~~l~yq-~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 27 WRPIVQFLRYQ-QI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp SHHHHHHHHHT-TC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHHc-Cc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 35666666632 33 34444 5566777765 24888999999999754
No 374
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=39.15 E-value=11 Score=37.54 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
+.+++.+|+|+|||.....
T Consensus 45 ~~vll~G~~GtGKT~la~~ 63 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKA 63 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHH
Confidence 5689999999999986543
No 375
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=39.10 E-value=19 Score=38.18 Aligned_cols=17 Identities=24% Similarity=0.143 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (724)
-+++.+|||+|||....
T Consensus 9 lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred eEEEECCCcCcHHHHHH
Confidence 46789999999998654
No 376
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=39.03 E-value=15 Score=32.85 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=31.8
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCc-eeeecCCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~-v~~~H~~l~ 293 (724)
.+.++||||.+-..+...+..|...|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4568999999988888999999999985 889999863
No 377
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=38.96 E-value=20 Score=38.27 Aligned_cols=26 Identities=31% Similarity=0.520 Sum_probs=19.4
Q ss_pred HHHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 45 eaI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
..+..++.|.++ ++-+.||+|||.+.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 345667788764 56779999999764
No 378
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=38.82 E-value=16 Score=37.80 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.+..+++.+|+|+|||+....
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~ 44 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARA 44 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHHH
Confidence 356899999999999987544
No 379
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=38.80 E-value=20 Score=38.52 Aligned_cols=25 Identities=32% Similarity=0.498 Sum_probs=19.0
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.+..++.|.++ ++-+.||+|||.+.
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 45567788775 55679999999864
No 380
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=38.61 E-value=19 Score=38.36 Aligned_cols=25 Identities=28% Similarity=0.618 Sum_probs=18.9
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.+..++.|.++ ++-+.||+|||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 44566788764 56779999999874
No 381
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=38.39 E-value=14 Score=39.41 Aligned_cols=19 Identities=32% Similarity=0.265 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (724)
.|.-+++++|||+|||...
T Consensus 135 ~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSEEEEEECSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5667889999999999743
No 382
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=38.33 E-value=20 Score=38.15 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=19.8
Q ss_pred HHHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 45 eaI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.++..++.|.++ ++-+.||+|||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 345667789875 56679999999874
No 383
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=38.32 E-value=20 Score=38.20 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=19.1
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
++..++.|.++ ++-+.||+|||.+.
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceEe
Confidence 45667788875 55679999999864
No 384
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=38.28 E-value=3.3e+02 Score=27.50 Aligned_cols=42 Identities=14% Similarity=0.085 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 242 LDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 242 ~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
.+.....+.++|...+ ....|||.+-..+.-+...|++.|+.
T Consensus 189 ~~~~~~~~~~~L~~~~-~~~aI~~~~d~~a~g~~~al~~~G~~ 230 (350)
T 3h75_A 189 RERAYRQAQQLLKRYP-KTQLVWSANDEMALGAMQAARELGRK 230 (350)
T ss_dssp HHHHHHHHHHHHHHCT-TEEEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCC-CcCEEEECChHHHHHHHHHHHHcCCC
Confidence 3455677778887764 46788999999999999999998875
No 385
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=38.23 E-value=18 Score=34.35 Aligned_cols=21 Identities=19% Similarity=0.234 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.|.-+++++|.|+|||...-+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456788999999999986543
No 386
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=38.22 E-value=33 Score=46.70 Aligned_cols=62 Identities=15% Similarity=0.288 Sum_probs=36.1
Q ss_pred HHHHHHHHHHcCCCCCCHHHH-HHHH---HHHcCCcEEEEcCCCchHHHHHHHH--HHcC--C--CeEEEEcCc
Q 004900 24 EALVKLLRWHFGHAQFRDKQL-DAIQ---AVLSGRDCFCLMPTGGGKSMCYQIP--ALAK--P--GIVLVVSPL 87 (724)
Q Consensus 24 ~~l~~~L~~~fG~~~lr~~Q~-eaI~---ail~g~dvlv~apTGsGKTl~~~lp--al~~--~--~~vLVlsPl 87 (724)
+.+.+.+++ .|+. +.+.+. ++++ .+.-.+-+++++|||+|||.|+-+- ++.+ + ..+.+|-|-
T Consensus 875 ~ai~~~~~~-~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPK 946 (3245)
T 3vkg_A 875 KKIQEIAKQ-RHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPK 946 (3245)
T ss_dssp HHHHHHHHH-TTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTT
T ss_pred HHHHHHHHH-cCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCC
Confidence 344444444 4664 455443 3432 2334567899999999999998643 3322 1 234566665
No 387
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=38.03 E-value=21 Score=38.80 Aligned_cols=26 Identities=27% Similarity=0.501 Sum_probs=19.5
Q ss_pred HHHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 45 eaI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
..+..++.|.++ ++-+.||+|||.+.
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 345667788764 56779999999874
No 388
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=37.86 E-value=1.8e+02 Score=34.13 Aligned_cols=143 Identities=15% Similarity=0.158 Sum_probs=84.1
Q ss_pred CchHHHHH--HHHHHc-CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcc
Q 004900 63 GGGKSMCY--QIPALA-KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (724)
Q Consensus 63 GsGKTl~~--~lpal~-~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE 139 (724)
.+||-... ++..+. .+.++||.+..+..+.-....|...|+....+++++....+..+......+.....+++++..
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~ 633 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTR 633 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHH
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecc
Confidence 46776432 233333 467999999999988888888888999999999999999999998888776544434544443
Q ss_pred cccChhHHHHHHhhhhcCCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCE----EEEeecCChhhHHHHHHhh
Q 004900 140 LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPI----LALTATAAPKVQKDVMESL 215 (724)
Q Consensus 140 ~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pi----l~LSAT~~~~v~~di~~~l 215 (724)
.... | .+....+.||+=+. .|. .......++++.+.-...++ ++...|....+.......+
T Consensus 634 agg~-G--------lNL~~a~~VI~~D~----~wn--p~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 634 AGGL-G--------INLMTADTVVIFDS----DWN--PQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp HHTT-T--------CCCTTCCEEEESSC----CSC--SHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred cccC-C--------CCccccceEEEecC----CCC--hhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 3221 1 12222445544332 355 33444455555443333333 3333454455555445555
Q ss_pred ccCCC
Q 004900 216 CLQNP 220 (724)
Q Consensus 216 ~l~~~ 220 (724)
.+...
T Consensus 699 ~l~~~ 703 (800)
T 3mwy_W 699 ILEYA 703 (800)
T ss_dssp TSCC-
T ss_pred HHHHH
Confidence 54443
No 389
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=37.65 E-value=14 Score=34.40 Aligned_cols=21 Identities=29% Similarity=0.400 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.|.-+++.++.|+|||.....
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 355688999999999986544
No 390
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=37.63 E-value=20 Score=38.08 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=19.1
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.+..++.|.++ ++-+.||+|||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 45667788764 56779999999864
No 391
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=37.53 E-value=22 Score=38.58 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=20.5
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCYQ 71 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~~ 71 (724)
.+..++.|.++ ++-+.||+|||.+..
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 56777899875 567799999998753
No 392
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=37.35 E-value=3.1e+02 Score=27.02 Aligned_cols=182 Identities=15% Similarity=0.075 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccC-hhHHHHHHhhhhcCCccEEEEccc
Q 004900 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTAT-PGFMSKLKKIHSRGLLNLVAIDEA 167 (724)
Q Consensus 89 aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T-~~~l~~L~~~~~~~~l~lIVIDEA 167 (724)
.++....+.+.+.|....+................+.... ++-+++.|..... ...+..+. ...+-+|++|..
T Consensus 19 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~--vdgiIi~~~~~~~~~~~~~~~~----~~~iPvV~~~~~ 92 (313)
T 3m9w_A 19 KDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRG--VDVLVIIPYNGQVLSNVVKEAK----QEGIKVLAYDRM 92 (313)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTT--CSEEEEECSSTTSCHHHHHHHH----TTTCEEEEESSC
T ss_pred HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcC--CCEEEEeCCChhhhHHHHHHHH----HCCCeEEEECCc
Confidence 4444455566777877776655444443333444443332 4444444432111 12222222 223667788753
Q ss_pred cccc----cCCCCCh-HHHHHHHHHHhhCCCCCEEEEeecCChhhHH----HHHHhhccCCCeEeeccCCCCceEEE--E
Q 004900 168 HCIS----SWGHDFR-PSYRKLSSLRNYLPDVPILALTATAAPKVQK----DVMESLCLQNPLVLKSSFNRPNLFYE--V 236 (724)
Q Consensus 168 H~l~----~~G~dFr-p~y~~L~~l~~~~p~~pil~LSAT~~~~v~~----di~~~l~l~~~~vi~~s~~r~ni~~~--v 236 (724)
..-. ..+.|.. ..+.....+....+...+.+++......... -+.+.+.-. ...+++... .
T Consensus 93 ~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~~~l~~~--------~~~~~~~~~~~~ 164 (313)
T 3m9w_A 93 INDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQMKVLKPY--------VDSGKIKVVGDQ 164 (313)
T ss_dssp CTTSCCSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHHHHHHHH--------HHTTSEEEEEEE
T ss_pred CCCCCceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHHHHHHhh--------ccCCCEEEEeec
Confidence 2111 1122222 2333344455356667777887765432211 111111100 001122211 1
Q ss_pred Ee-ccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 237 RY-KDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 237 ~~-~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
.. ..........+.++|...++....|||.+-..+.-+...|++.|+.
T Consensus 165 ~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 165 WVDGWLPENALKIMENALTANNNKIDAVVASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp ECGGGCHHHHHHHHHHHHHHTTTCCCEEEESSHHHHHHHHHHHHTTTCT
T ss_pred cCCCcCHHHHHHHHHHHHHhCCCCeeEEEECCCchHHHHHHHHHHcCCC
Confidence 11 1123455667778888763456789999988888999999988763
No 393
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=37.33 E-value=18 Score=33.13 Aligned_cols=17 Identities=24% Similarity=0.211 Sum_probs=13.9
Q ss_pred EEEEcCCCchHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 56 vlv~apTGsGKTl~~~l 72 (724)
+++.+++|+|||.....
T Consensus 5 I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEecCCCCCHHHHHHH
Confidence 67899999999986543
No 394
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=37.25 E-value=35 Score=37.46 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=17.4
Q ss_pred CCcEEEEcCCCchHHHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpa 74 (724)
.+.+++.+|+|+|||.....-+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA 71 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLA 71 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHH
Confidence 3679999999999998654433
No 395
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=37.21 E-value=37 Score=30.21 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=31.7
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCc-eeeecCCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLN 293 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~-v~~~H~~l~ 293 (724)
.+.++||||.+=......+..|...|+. +..+.||+.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 3568999999988888999999999995 888889984
No 396
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=37.20 E-value=17 Score=38.69 Aligned_cols=19 Identities=32% Similarity=0.345 Sum_probs=15.1
Q ss_pred cCCcEEEEcCCCchHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~ 70 (724)
.+.-+++++|||+|||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456889999999999743
No 397
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=36.95 E-value=20 Score=38.19 Aligned_cols=26 Identities=31% Similarity=0.635 Sum_probs=19.5
Q ss_pred HHHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 45 eaI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
..+..++.|.++ ++-+.||+|||.+.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 345667788764 56779999999864
No 398
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=36.86 E-value=21 Score=38.34 Aligned_cols=25 Identities=40% Similarity=0.699 Sum_probs=18.6
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.+..++.|.++ ++-+.||+|||.+.
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCcceec
Confidence 44556788764 56779999999864
No 399
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=36.85 E-value=23 Score=38.47 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=39.8
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE 139 (724)
.++.+||++|++.-+....+.|+..|+++..+++. .+..+......+ ..+++++|..
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~----~R~~~~~~F~~g--~~~vLVaT~v 232 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRK----TFEREYPTIKQK--KPDFILATDI 232 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSS----SCC--------C--CCSEEEESSS
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecch----hHHHHHhhhcCC--CceEEEECCh
Confidence 46789999999999999999999999999998873 233444455555 3778887753
No 400
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=36.79 E-value=17 Score=33.49 Aligned_cols=20 Identities=20% Similarity=0.104 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
|.-+++++|.|+|||...-.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45678999999999986543
No 401
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=36.75 E-value=22 Score=38.40 Aligned_cols=25 Identities=32% Similarity=0.676 Sum_probs=19.2
Q ss_pred HHHHHHcCCc--EEEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRD--CFCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~d--vlv~apTGsGKTl~~ 70 (724)
.+..++.|.+ +++-+.||+|||.+.
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 4566778876 456779999999874
No 402
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=36.73 E-value=18 Score=39.67 Aligned_cols=19 Identities=26% Similarity=0.315 Sum_probs=16.1
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
+.+++.+|+|+|||.....
T Consensus 64 ~~iLl~GppGtGKT~la~a 82 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALA 82 (456)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHH
Confidence 5799999999999986543
No 403
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=36.72 E-value=14 Score=34.49 Aligned_cols=21 Identities=19% Similarity=0.101 Sum_probs=16.1
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.|.-+.+++|+|+|||..+-.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 345578899999999986543
No 404
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=36.58 E-value=27 Score=39.96 Aligned_cols=59 Identities=15% Similarity=0.204 Sum_probs=46.2
Q ss_pred CCeEEEEcCcHHHHHHHHHHHHHc------CCceeeeccc--------chHHHHHHHHhhhhcCCCCccEEEeCc
Q 004900 78 PGIVLVVSPLIALMENQVIGLKEK------GIAGEFLSST--------QTMQVKTKIYEDLDSGKPSLRLLYVTP 138 (724)
Q Consensus 78 ~~~vLVlsPl~aL~~qqv~~l~~~------gi~~~~l~s~--------~~~~~~~~i~~~l~~~~~~~~il~~TP 138 (724)
++.+||.++++..+....+.|... |+.+..+++. +....+..+......+. ++||++|.
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~--~~VLVaT~ 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK--INLLIATT 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEEC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC--CcEEEEcc
Confidence 689999999999999999999876 8999999998 88899999998888765 66766664
No 405
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=36.43 E-value=38 Score=34.28 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=42.2
Q ss_pred CceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a 317 (724)
+.++||.|+++.-+.++++.+.+. +..+..+||+.+....... +. ..+|+|+|.-
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~ 114 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPG 114 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHH
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHH
Confidence 457999999999999999988753 5788899999887654432 22 3779999853
No 406
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=36.30 E-value=17 Score=34.96 Aligned_cols=17 Identities=35% Similarity=0.409 Sum_probs=14.3
Q ss_pred CcEEEEcCCCchHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (724)
|-+++++|+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45889999999999753
No 407
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=35.72 E-value=23 Score=38.90 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=18.7
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
++..++.|.++ |+-+.||+|||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34556788764 56779999999874
No 408
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=35.38 E-value=4e+02 Score=27.65 Aligned_cols=146 Identities=14% Similarity=0.096 Sum_probs=71.0
Q ss_pred CCCchHHHHHHHHHH------cCCCCCC--HHHHHHHHHHHc--------CCcEEEEcCCCchHHHHHH-HHHHc--C-C
Q 004900 19 PLHEKEALVKLLRWH------FGHAQFR--DKQLDAIQAVLS--------GRDCFCLMPTGGGKSMCYQ-IPALA--K-P 78 (724)
Q Consensus 19 ~~~~~~~l~~~L~~~------fG~~~lr--~~Q~eaI~ail~--------g~dvlv~apTGsGKTl~~~-lpal~--~-~ 78 (724)
++..++++.+++.+. ++|.... +.=++.+...+. ..++++ |++|-....+ +-++. . +
T Consensus 55 ~~~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~---t~g~t~al~~~~~~l~~~~~g 131 (437)
T 3g0t_A 55 GLPAPQIGIETEIQKLREGVASIYPNLDGLPELKQEASRFAKLFVNIDIPARACVP---TVGSMQGCFVSFLVANRTHKN 131 (437)
T ss_dssp CSCCCHHHHHHHHHHHHHTGGGSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEE---ESHHHHHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHHHHHHHhCCcCcCCCCCCChHHHHHHHHHHHHHhhCCCCCcccEEE---eCCHHHHHHHHHHHHhcCCCC
Confidence 345566776666543 4555443 333444544443 234444 3344444333 33443 3 4
Q ss_pred C--eEEEEcCcHHHHHHHHHHHHHcCCceeeecccchH--HHHHHHHhhhhcCCCCccEE-EeCcc----cccChhHHHH
Q 004900 79 G--IVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTM--QVKTKIYEDLDSGKPSLRLL-YVTPE----LTATPGFMSK 149 (724)
Q Consensus 79 ~--~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~--~~~~~i~~~l~~~~~~~~il-~~TPE----~i~T~~~l~~ 149 (724)
. .+|+..|+-.-... .+...|.....+...... -....+...+... ..+++ +++|. .+.+...+..
T Consensus 132 d~~~Vl~~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~--~~~~v~l~~p~nptG~~~~~~~l~~ 206 (437)
T 3g0t_A 132 REYGTLFIDPGFNLNKL---QCRILGQKFESFDLFEYRGEKLREKLESYLQTG--QFCSIIYSNPNNPTWQCMTDEELRI 206 (437)
T ss_dssp CSCCEEEEESCCHHHHH---HHHHHTCCCEEEEGGGGCTTHHHHHHHHHHTTT--CCCEEEEESSCTTTCCCCCHHHHHH
T ss_pred CccEEEEeCCCcHhHHH---HHHHcCCEEEEEeecCCCCccCHHHHHHHHhcC--CceEEEEeCCCCCCCCcCCHHHHHH
Confidence 5 68888888655443 334556666555432110 1122222223122 34544 45663 2233344555
Q ss_pred HHhhhhcCCccEEEEccccccccC
Q 004900 150 LKKIHSRGLLNLVAIDEAHCISSW 173 (724)
Q Consensus 150 L~~~~~~~~l~lIVIDEAH~l~~~ 173 (724)
+........ -+||+||+|....+
T Consensus 207 i~~~a~~~~-~~li~De~~~~~~~ 229 (437)
T 3g0t_A 207 IGELATKHD-VIVIEDLAYFGMDF 229 (437)
T ss_dssp HHHHHHHTT-CEEEEECTTTTCCT
T ss_pred HHHHHHHCC-cEEEEEcchhhccc
Confidence 554443332 37899999976543
No 409
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=35.33 E-value=3.1e+02 Score=26.43 Aligned_cols=176 Identities=11% Similarity=0.102 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccccc-
Q 004900 91 MENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAHC- 169 (724)
Q Consensus 91 ~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~- 169 (724)
+....+.+.+.|....+................+.... ++-+++.|... ...+..+. ...+-+|++|..-.
T Consensus 26 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~--~~~~~~l~----~~~iPvV~i~~~~~~ 97 (276)
T 3jy6_A 26 FKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRG--FDGLILQSFSN--PQTVQEIL----HQQMPVVSVDREMDA 97 (276)
T ss_dssp HHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTT--CSEEEEESSCC--HHHHHHHH----TTSSCEEEESCCCTT
T ss_pred HHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEecCCc--HHHHHHHH----HCCCCEEEEecccCC
Confidence 33334445556776666554444333333444443332 44444433222 22222222 23366777775321
Q ss_pred --cccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCC-hhhHHHHHHhhccCCCeEeeccCCCCceEEEEEecc-chhhH
Q 004900 170 --ISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAA-PKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKD-LLDDA 245 (724)
Q Consensus 170 --l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~-~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~-~~~~k 245 (724)
+...+.|....-..+...........+.+++.... ..... .+.-++.....-. +. +.+.... ...+.
T Consensus 98 ~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~--~R~~gf~~~l~~~-----~~--~~~~~~~~~~~~~ 168 (276)
T 3jy6_A 98 CPWPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQ--ERYRGILAAAQDV-----DV--LEVSESSYNHSEV 168 (276)
T ss_dssp CSSCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHH--HHHHHHHTTCSEE-----EE--EEECSSSCCHHHH
T ss_pred CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHH--HHHHHHHHHHHhC-----Cc--EEEeccccCCcHH
Confidence 11112233322233333333345667777777654 22211 1222222221100 11 1121110 22335
Q ss_pred HHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 246 YADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 246 ~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
...+.++|... ..+..|||.+...+.-+...|++.|+.
T Consensus 169 ~~~~~~~l~~~-~~~~ai~~~~d~~a~g~~~al~~~g~~ 206 (276)
T 3jy6_A 169 HQRLTQLITQN-DQKTVAFALKERWLLEFFPNLIISGLI 206 (276)
T ss_dssp HHHHHHHHHSS-SSCEEEEESSHHHHHHHSHHHHHSSSC
T ss_pred HHHHHHHHhcC-CCCcEEEEeCcHHHHHHHHHHHHcCCC
Confidence 56666777543 456889999988888888999887764
No 410
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=35.00 E-value=53 Score=39.34 Aligned_cols=58 Identities=12% Similarity=0.080 Sum_probs=45.5
Q ss_pred HhcCCceEEEEecccccHHHHHHHHHh----CCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc
Q 004900 254 KANGDTCAIVYCLERTTCDELSAYLSA----GGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA 317 (724)
Q Consensus 254 k~~~~~~~IIf~~sr~~~e~La~~L~~----~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a 317 (724)
....+..++|.|+|+.-|.+.++.+.. .|+++..+.|+++..+|.... .++|+|+|..
T Consensus 116 ~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTpg 177 (997)
T 2ipc_A 116 NALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTNS 177 (997)
T ss_dssp HHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEHH
T ss_pred HHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECch
Confidence 333455799999999988887776654 599999999999988777654 3789999965
No 411
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.92 E-value=24 Score=38.33 Aligned_cols=26 Identities=35% Similarity=0.515 Sum_probs=20.6
Q ss_pred HHHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 45 DAIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 45 eaI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
..|..++.|.++ ++-+.||+|||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 467788899875 56679999999874
No 412
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=34.90 E-value=1.9e+02 Score=30.76 Aligned_cols=39 Identities=13% Similarity=0.189 Sum_probs=27.7
Q ss_pred CccEEEeCcc------cccChhHHHHHHhhhhcCCccEEEEccccc
Q 004900 130 SLRLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHC 169 (724)
Q Consensus 130 ~~~il~~TPE------~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~ 169 (724)
...++++.|. .+.+++++..+..+.....+ +||+||+|.
T Consensus 201 ~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~-~lI~DEv~~ 245 (453)
T 2cy8_A 201 DIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGA-LFILDEVIS 245 (453)
T ss_dssp GEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTC-EEEEECTTT
T ss_pred CEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCC-EEEEecCcc
Confidence 4678888875 23356778888776665544 789999997
No 413
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=34.78 E-value=49 Score=34.57 Aligned_cols=15 Identities=20% Similarity=-0.119 Sum_probs=12.5
Q ss_pred EEEEcCCCchHHHHH
Q 004900 56 CFCLMPTGGGKSMCY 70 (724)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (724)
+.+.+|+|+|||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999754
No 414
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=34.76 E-value=3.8e+02 Score=27.68 Aligned_cols=146 Identities=14% Similarity=0.057 Sum_probs=70.8
Q ss_pred CCCchHHHHHHHHH-----HcCCCCC--CHHHHHHHHHHHcC---Cc---EEEEcCCCchHHHHHHH-HHHcC-CCeEEE
Q 004900 19 PLHEKEALVKLLRW-----HFGHAQF--RDKQLDAIQAVLSG---RD---CFCLMPTGGGKSMCYQI-PALAK-PGIVLV 83 (724)
Q Consensus 19 ~~~~~~~l~~~L~~-----~fG~~~l--r~~Q~eaI~ail~g---~d---vlv~apTGsGKTl~~~l-pal~~-~~~vLV 83 (724)
++...+.+.+++.+ .++|... .+.=++++...+.+ -+ -++ .|.+|....+++ -++.. +..+|+
T Consensus 54 ~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~--~t~g~~~al~~~~~~l~~~gd~Vl~ 131 (418)
T 3rq1_A 54 NLVFLKTVKEEYLSLSDSEHVGYAPIAGIPDFLCAAEKECFGNFRPEGHIRSI--ATAGGTGGIHHLIHNYTEPGDEVLT 131 (418)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEE--EESHHHHHHHHHHHHHSCTTCEEEE
T ss_pred CccccHHHHHHHHHhcccccCCCCCCCChHHHHHHHHHHHhcccCccccccEE--ECCchHHHHHHHHHHhcCCCCEEEE
Confidence 45666777776654 3456544 33334555554422 22 333 345566554443 33443 567888
Q ss_pred EcCcHHHHHHHHHHHHHcCCceeeecc-----cchHHHHHHHHhhhhcCCCCccEEEeCc-c----cccChhHHHHHHhh
Q 004900 84 VSPLIALMENQVIGLKEKGIAGEFLSS-----TQTMQVKTKIYEDLDSGKPSLRLLYVTP-E----LTATPGFMSKLKKI 153 (724)
Q Consensus 84 lsPl~aL~~qqv~~l~~~gi~~~~l~s-----~~~~~~~~~i~~~l~~~~~~~~il~~TP-E----~i~T~~~l~~L~~~ 153 (724)
..|+-.-..+ .+...|.....+.. .....................-+++.+| . .+.+...+..+.+.
T Consensus 132 ~~p~~~~~~~---~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~ 208 (418)
T 3rq1_A 132 ADWYWGAYRV---ICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSIEDKDWDSILNF 208 (418)
T ss_dssp ESSCCTHHHH---HHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHH
T ss_pred CCCCchhHHH---HHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Confidence 8888654433 34556766655432 1222222222221100011122445556 2 44455556666554
Q ss_pred hh------cCCccEEEEcccccc
Q 004900 154 HS------RGLLNLVAIDEAHCI 170 (724)
Q Consensus 154 ~~------~~~l~lIVIDEAH~l 170 (724)
.. ... -+||+||+|.-
T Consensus 209 ~~~~~~~~~~~-~~li~De~y~~ 230 (418)
T 3rq1_A 209 LKDLVAIGRNN-VIIGIDVAYLD 230 (418)
T ss_dssp HHHHHHTSSCE-EEEEEECTTGG
T ss_pred HHHhhhccCCC-eEEEEeccccc
Confidence 43 222 37899999953
No 415
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=34.46 E-value=2.1e+02 Score=24.15 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=72.9
Q ss_pred EEEEeecCChhhHHHHHHhhccCCCeEeeccCCCCceEEEEEeccchhhHHHHHHHHHHhcCCceEEEEecccccHHHHH
Q 004900 196 ILALTATAAPKVQKDVMESLCLQNPLVLKSSFNRPNLFYEVRYKDLLDDAYADLCSVLKANGDTCAIVYCLERTTCDELS 275 (724)
Q Consensus 196 il~LSAT~~~~v~~di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La 275 (724)
++.+-.|-..+....|.... .|.-|.++.....++.-..+..+-....-.+++|..+.+.-..++.
T Consensus 3 ililintnndelikkikkev--------------enqgyqvrdvndsdelkkemkklaeeknfekiliisndkqllkeml 68 (134)
T 2lci_A 3 ILILINTNNDELIKKIKKEV--------------ENQGYQVRDVNDSDELKKEMKKLAEEKNFEKILIISNDKQLLKEML 68 (134)
T ss_dssp CEEEEECSCHHHHHHHHHHT--------------TTTTCEEEEECSHHHHHHHHHHHHHCCSCCCEEEEESCHHHHHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHH--------------HccCeeeeecCchHHHHHHHHHHHhhcCcceEEEEcCcHHHHHHHH
Confidence 45566676666666555433 3445666666555555555655555566678999999999999999
Q ss_pred HHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc
Q 004900 276 AYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV 316 (724)
Q Consensus 276 ~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~ 316 (724)
+.+.+.|+.+..+--+.+..+-...-+...+....|--.|+
T Consensus 69 elisklgykvflllqdqdeneleefkrkiesqgyevrkvtd 109 (134)
T 2lci_A 69 ELISKLGYKVFLLLQDQDENELEEFKRKIESQGYEVRKVTD 109 (134)
T ss_dssp HHHHHHTCCEEEEEECSCHHHHHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHhCceeEEEeecCchhHHHHHHHHHHhCCeeeeecCC
Confidence 99999999999888888877765555555555555544443
No 416
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=34.42 E-value=17 Score=35.52 Aligned_cols=20 Identities=25% Similarity=0.273 Sum_probs=12.0
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (724)
.|.-+.+++|+|+|||...-
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp CCCEEEEECSCC----CHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46667889999999997543
No 417
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=34.06 E-value=20 Score=34.04 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=15.8
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (724)
.|.-+++.+|.|+|||...-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45567789999999997653
No 418
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=33.83 E-value=32 Score=39.37 Aligned_cols=70 Identities=9% Similarity=0.162 Sum_probs=49.6
Q ss_pred ceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEccc-----cccc-c-CCCCc
Q 004900 259 TCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVA-----FGMG-I-DRKDV 327 (724)
Q Consensus 259 ~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a-----~g~G-I-Dip~V 327 (724)
.++||.++++.-+.+.+..+.+. |+.+..++|+.+...+...+ . ...+|+|+|.- +..| + ++.++
T Consensus 62 ~~~lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~-~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 62 GKVVFFANQIPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQI---V-ENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCSSSCHHHH---H-HTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred CeEEEEECCHHHHHHHHHHHHHHhccCCceEEEEeCCccccccHHHh---c-cCCCEEEECHHHHHHHHhcCcccccccc
Confidence 67999999999888888888764 78999999998654332222 1 24789999953 2233 3 56678
Q ss_pred ceEEe
Q 004900 328 RLVCH 332 (724)
Q Consensus 328 ~~VI~ 332 (724)
++||.
T Consensus 138 ~~vVi 142 (696)
T 2ykg_A 138 TLMIF 142 (696)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 88874
No 419
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=33.56 E-value=22 Score=38.02 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=19.8
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
.+..++.|.++ ++-+.||+|||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 56778899875 55679999999874
No 420
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=33.55 E-value=22 Score=33.64 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
+-+++.++.|+|||.....
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999986543
No 421
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=33.49 E-value=3.6e+02 Score=30.49 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=58.2
Q ss_pred CCchHHHH--HHHHHHc--CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeC
Q 004900 62 TGGGKSMC--YQIPALA--KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVT 137 (724)
Q Consensus 62 TGsGKTl~--~~lpal~--~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~T 137 (724)
..+||-.. .++..+. .+.++||++..+..+......|...|+....+++++....+..+......+.....+++++
T Consensus 396 ~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~s 475 (644)
T 1z3i_X 396 QLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLS 475 (644)
T ss_dssp GGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEE
T ss_pred ccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEe
Confidence 45788643 3333332 4779999999999888777888889999999999999999998888887765433355555
Q ss_pred ccc
Q 004900 138 PEL 140 (724)
Q Consensus 138 PE~ 140 (724)
...
T Consensus 476 t~a 478 (644)
T 1z3i_X 476 SKA 478 (644)
T ss_dssp GGG
T ss_pred ccc
Confidence 443
No 422
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=33.41 E-value=4e+02 Score=27.01 Aligned_cols=39 Identities=5% Similarity=0.080 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
..-+..+.++|...+ + .|||.+...+.-+...|++.|+.
T Consensus 228 ~~~~~~~~~ll~~~~--~-ai~~~nD~~A~g~~~al~~~G~~ 266 (348)
T 3bil_A 228 SVGFEGATKLLDQGA--K-TLFAGDSMMTIGVIEACHKAGLV 266 (348)
T ss_dssp HHHHHHHHHHHHTTC--S-EEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC--C-EEEEcChHHHHHHHHHHHHcCCC
Confidence 344566677777654 6 88898888888888888887764
No 423
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=33.38 E-value=23 Score=36.87 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.0
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
..+++.+|+|+|||....+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 5789999999999986544
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=33.30 E-value=19 Score=32.95 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHHH
Q 004900 56 CFCLMPTGGGKSMCY 70 (724)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (724)
.++++|+|+|||...
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999753
No 425
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=33.18 E-value=33 Score=38.94 Aligned_cols=28 Identities=32% Similarity=0.230 Sum_probs=21.5
Q ss_pred HHHHHcCCcEEEEcCCCchHHHHHHHHH
Q 004900 47 IQAVLSGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 47 I~ail~g~dvlv~apTGsGKTl~~~lpa 74 (724)
-..+..|..+++.+|+|+|||..+..-+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtlar~ia 81 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLGQAMA 81 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHH
T ss_pred cccccCCCEEEEEeCCCCCHHHHHHHHh
Confidence 3445578899999999999998665433
No 426
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=33.18 E-value=1.2e+02 Score=34.79 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=51.5
Q ss_pred HHHHcCCCeEEEEcCcHHHHHHHHHHHHHcC------------------------------------CceeeecccchHH
Q 004900 72 IPALAKPGIVLVVSPLIALMENQVIGLKEKG------------------------------------IAGEFLSSTQTMQ 115 (724)
Q Consensus 72 lpal~~~~~vLVlsPl~aL~~qqv~~l~~~g------------------------------------i~~~~l~s~~~~~ 115 (724)
.-.+..++.+||.+|++.-+......+.... ..+.+++++....
T Consensus 246 ~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 325 (715)
T 2va8_A 246 LDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKA 325 (715)
T ss_dssp HHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHH
Confidence 3445577899999999999888888877642 1367788999999
Q ss_pred HHHHHHhhhhcCCCCccEEEeCcc
Q 004900 116 VKTKIYEDLDSGKPSLRLLYVTPE 139 (724)
Q Consensus 116 ~~~~i~~~l~~~~~~~~il~~TPE 139 (724)
.+..+......+. .+++++|..
T Consensus 326 ~r~~v~~~f~~g~--~~vlvaT~~ 347 (715)
T 2va8_A 326 LRDLIEEGFRQRK--IKVIVATPT 347 (715)
T ss_dssp HHHHHHHHHHTTC--SCEEEECGG
T ss_pred HHHHHHHHHHcCC--CeEEEEChH
Confidence 8888888887774 888888864
No 427
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=33.17 E-value=21 Score=33.16 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=15.6
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
+.-+++.+++|+|||.....
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34578899999999986543
No 428
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=33.13 E-value=48 Score=38.31 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=45.9
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE 139 (724)
..+.+||++|++.-++.....|+..++.+..+++. .+..+......+. .+||++|..
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~--~~VLVaTdv 465 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGD--WDFVITTDI 465 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCC--CSEEEECGG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCC--ceEEEECch
Confidence 46789999999999999999999999999999873 4555666666664 788888853
No 429
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=33.08 E-value=2.4e+02 Score=24.42 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=30.1
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHH
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~ 209 (724)
..++||+|-.- .. ...+.-+..++...+++|++++|+........
T Consensus 47 ~~dliild~~l--~~-----~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~ 91 (155)
T 1qkk_A 47 FAGIVISDIRM--PG-----MDGLALFRKILALDPDLPMILVTGHGDIPMAV 91 (155)
T ss_dssp CCSEEEEESCC--SS-----SCHHHHHHHHHHHCTTSCEEEEECGGGHHHHH
T ss_pred CCCEEEEeCCC--CC-----CCHHHHHHHHHhhCCCCCEEEEECCCChHHHH
Confidence 47889998431 11 12345567777778899999999987655433
No 430
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=33.02 E-value=21 Score=37.83 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=19.7
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCYQ 71 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~~ 71 (724)
.+..++.|.++ ++-+.||+|||.+..
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 55666788775 567899999998753
No 431
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=32.97 E-value=27 Score=37.22 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=18.0
Q ss_pred HHHHH-cCCc--EEEEcCCCchHHHHHH
Q 004900 47 IQAVL-SGRD--CFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 47 I~ail-~g~d--vlv~apTGsGKTl~~~ 71 (724)
+..++ .|.+ +++-+.||+|||.+..
T Consensus 76 v~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 76 IIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp HHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred hhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 33445 4776 4788999999998743
No 432
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=32.92 E-value=25 Score=34.49 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=16.7
Q ss_pred HcCCcEEEEcCCCchHHHHHH
Q 004900 51 LSGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 51 l~g~dvlv~apTGsGKTl~~~ 71 (724)
-.|.-+++++|.|+|||...-
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 467778899999999998543
No 433
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=32.91 E-value=24 Score=31.99 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=30.7
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCc-eeeecCCC
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGL 292 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~-v~~~H~~l 292 (724)
.+.++||||.+-..+...+..|...|+. +..+.||+
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~ 91 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGL 91 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHH
Confidence 3567999999988889999999999985 77888886
No 434
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=32.91 E-value=23 Score=34.37 Aligned_cols=22 Identities=14% Similarity=0.033 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lp 73 (724)
.+.-+++.+++|+|||.....-
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~L 27 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRI 27 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHH
Confidence 3456889999999999865443
No 435
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=32.85 E-value=26 Score=36.07 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.4
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
...+++.+|+|+|||.....
T Consensus 45 ~~~vLl~G~~GtGKT~la~~ 64 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRA 64 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 45799999999999986543
No 436
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=32.61 E-value=21 Score=38.82 Aligned_cols=16 Identities=31% Similarity=0.102 Sum_probs=13.0
Q ss_pred EEEEcCCCchHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 56 vlv~apTGsGKTl~~~ 71 (724)
+++.+|||+|||....
T Consensus 5 i~i~GptgsGKttla~ 20 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEECSSSSHHHHHH
T ss_pred EEEECcchhhHHHHHH
Confidence 5788999999997543
No 437
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=32.44 E-value=24 Score=33.95 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=15.6
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp 73 (724)
.-+.+.+|+|+|||...-+-
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45778999999999865443
No 438
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=32.32 E-value=4.3e+02 Score=27.05 Aligned_cols=139 Identities=12% Similarity=0.146 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHc--CCCCCCHHHHH---HHHHHHcCCcEEEEcCCCchHHHHHHHHHH-------cC-CCeEEEEcCcHH
Q 004900 23 KEALVKLLRWHF--GHAQFRDKQLD---AIQAVLSGRDCFCLMPTGGGKSMCYQIPAL-------AK-PGIVLVVSPLIA 89 (724)
Q Consensus 23 ~~~l~~~L~~~f--G~~~lr~~Q~e---aI~ail~g~dvlv~apTGsGKTl~~~lpal-------~~-~~~vLVlsPl~a 89 (724)
.+++.+++.+.+ ++....+...+ .+...+...++ +...+|+. .+...+.++ .. +..+|+..|+-.
T Consensus 14 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-i~~~sGt~-a~~~al~~~~~~~~~~~~~g~~Vi~~~~~~~ 91 (390)
T 3b8x_A 14 DDLEYKAIQSVLDSKMFTMGEYVKQYETQFAKTFGSKYA-VMVSSGST-ANLLMIAALFFTKKPRLKKGDEIIVPAVSWS 91 (390)
T ss_dssp CHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHTCSEE-EEESCHHH-HHHHHHHHTTSSSSCSCCTTCEEEEESSSCH
T ss_pred CHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHCCCcE-EEECCHHH-HHHHHHHHHHhhhhcCCCCcCEEEECCCCcH
Confidence 344555554433 33333444333 33444444443 33344442 333344444 23 345666677754
Q ss_pred HHHHHHHHHHHcCCceeeecccch-HH-HHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEccc
Q 004900 90 LMENQVIGLKEKGIAGEFLSSTQT-MQ-VKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEA 167 (724)
Q Consensus 90 L~~qqv~~l~~~gi~~~~l~s~~~-~~-~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEA 167 (724)
-... .+...|.....+..... .. ....+...+. +..+++++++ ...++..+..+..+..... -+||+||+
T Consensus 92 ~~~~---~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~-~~g~~~~~~~i~~l~~~~~-~~li~D~a 163 (390)
T 3b8x_A 92 TTYY---PLQQYGLRVKFVDIDINTLNIDIESLKEAVT---DSTKAILTVN-LLGNPNNFDEINKIIGGRD-IILLEDNC 163 (390)
T ss_dssp HHHH---HHHHTTCEEEEECBCTTTCSBCHHHHHHHCC---TTEEEEEEEC-GGGCCCCHHHHHHHHTTSC-CEEEEECT
T ss_pred HHHH---HHHHcCCEEEEEecCccccCcCHHHHHHHhC---cCCeEEEEEC-CccChhhHHHHHHHHHHcC-CEEEEECc
Confidence 4333 34456776655543211 00 1112222222 2356666653 3455555666665554433 36899999
Q ss_pred cccc
Q 004900 168 HCIS 171 (724)
Q Consensus 168 H~l~ 171 (724)
|...
T Consensus 164 ~~~g 167 (390)
T 3b8x_A 164 ESMG 167 (390)
T ss_dssp TCTT
T ss_pred Cccc
Confidence 9853
No 439
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=32.15 E-value=3.7e+02 Score=26.29 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 247 ADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 247 ~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
..+.++|... ..+.-|||.+...+.-+...|++.|+.
T Consensus 186 ~~~~~~l~~~-~~~~ai~~~~d~~A~g~~~al~~~g~~ 222 (301)
T 3miz_A 186 AAATEMLKQD-DRPTAIMSGNDEMAIQIYIAAMALGLR 222 (301)
T ss_dssp HHHHHHHTST-TCCSEEEESSHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 4566666543 345688898888888888999888765
No 440
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=32.08 E-value=22 Score=38.32 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=21.0
Q ss_pred HHHHHHH--------HHHcCCcE--EEEcCCCchHHHHH
Q 004900 42 KQLDAIQ--------AVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 42 ~Q~eaI~--------ail~g~dv--lv~apTGsGKTl~~ 70 (724)
-|.++.. .++.|.++ ++-+.||+|||.+.
T Consensus 78 tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 78 TQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp CHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 5666554 46688764 56789999999864
No 441
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=31.99 E-value=39 Score=33.71 Aligned_cols=19 Identities=21% Similarity=-0.060 Sum_probs=15.0
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
.-+++.++.|+|||.....
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 3578899999999986543
No 442
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=31.95 E-value=19 Score=38.31 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=13.5
Q ss_pred cEEEEcCCCchHHHHH
Q 004900 55 DCFCLMPTGGGKSMCY 70 (724)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (724)
-.++++|+|+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999765
No 443
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=31.74 E-value=33 Score=32.74 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=15.2
Q ss_pred cEEEEcCCCchHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lp 73 (724)
.+++.+|.|+|||.....-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3788999999999866543
No 444
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=31.69 E-value=28 Score=32.13 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=15.9
Q ss_pred CcEEEEcCCCchHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lp 73 (724)
+.+++.++.|+|||.....-
T Consensus 5 ~~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHH
Confidence 35889999999999866543
No 445
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=31.58 E-value=3.1e+02 Score=28.00 Aligned_cols=147 Identities=15% Similarity=-0.007 Sum_probs=68.5
Q ss_pred CchHHHHHHHHHHc------CCCCC--CHHHHHHHHHHHcC-----CcEEEEcCCCchHHHHHHHH-HH---cCCCeEEE
Q 004900 21 HEKEALVKLLRWHF------GHAQF--RDKQLDAIQAVLSG-----RDCFCLMPTGGGKSMCYQIP-AL---AKPGIVLV 83 (724)
Q Consensus 21 ~~~~~l~~~L~~~f------G~~~l--r~~Q~eaI~ail~g-----~dvlv~apTGsGKTl~~~lp-al---~~~~~vLV 83 (724)
...+.+.+++.+.+ +|... .+.=++++...+.+ .++++ ..|.+|-....++. ++ ..+..+|+
T Consensus 44 ~~~~~v~~a~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~-~~~~g~~~a~~~~~~~~~~~~~gd~vl~ 122 (394)
T 2ay1_A 44 PIMRAVHAAEQRMLETETTKTYAGLSGEPEFQKAMGELILGDGLKSETTAT-LATVGGTGALRQALELARMANPDLRVFV 122 (394)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEE-EEEEHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred cCcHHHHHHHHHhcCCcccCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEE-EecCCchhHHHHHHHHHHhcCCCCEEEE
Confidence 44577777776642 34322 23344555555432 23443 23444554433322 12 25567888
Q ss_pred EcCcHHHHHHHHHHHHHcCCceeeeccc---chHHHHHHHHhhhhcCCCCccEEE-eCcc----cccChhHHHHHHhhhh
Q 004900 84 VSPLIALMENQVIGLKEKGIAGEFLSST---QTMQVKTKIYEDLDSGKPSLRLLY-VTPE----LTATPGFMSKLKKIHS 155 (724)
Q Consensus 84 lsPl~aL~~qqv~~l~~~gi~~~~l~s~---~~~~~~~~i~~~l~~~~~~~~il~-~TPE----~i~T~~~l~~L~~~~~ 155 (724)
..|+-.-... .+...|.....+... ...-....+...+....+...+++ .+|. .+.+...+..+.....
T Consensus 123 ~~p~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~ 199 (394)
T 2ay1_A 123 SDPTWPNHVS---IMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANLTLDQWAEIASILE 199 (394)
T ss_dssp EESCCHHHHH---HHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred cCCCChhHHH---HHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 8898665443 334456665544321 100011112222222111233333 3333 3344455555544443
Q ss_pred cCCccEEEEcccccccc
Q 004900 156 RGLLNLVAIDEAHCISS 172 (724)
Q Consensus 156 ~~~l~lIVIDEAH~l~~ 172 (724)
... -+||+||+|....
T Consensus 200 ~~~-~~li~De~~~~~~ 215 (394)
T 2ay1_A 200 KTG-ALPLIDLAYQGFG 215 (394)
T ss_dssp HHT-CEEEEEECCTTSS
T ss_pred HCC-CEEEEecCccccc
Confidence 222 3789999997554
No 446
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=31.48 E-value=2.6e+02 Score=24.23 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=31.3
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHH
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKD 210 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~d 210 (724)
.+++||+|-.- .+ ...+.-+..++...+++|++++|+.........
T Consensus 58 ~~dlvi~D~~l--~~-----~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~ 103 (153)
T 3hv2_A 58 EVDLVISAAHL--PQ-----MDGPTLLARIHQQYPSTTRILLTGDPDLKLIAK 103 (153)
T ss_dssp CCSEEEEESCC--SS-----SCHHHHHHHHHHHCTTSEEEEECCCCCHHHHHH
T ss_pred CCCEEEEeCCC--Cc-----CcHHHHHHHHHhHCCCCeEEEEECCCCHHHHHH
Confidence 47889988431 11 112455677788889999999999877665443
No 447
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=31.47 E-value=22 Score=37.75 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=19.0
Q ss_pred HHHHHHcCCcE--EEEcCCCchHHHHHH
Q 004900 46 AIQAVLSGRDC--FCLMPTGGGKSMCYQ 71 (724)
Q Consensus 46 aI~ail~g~dv--lv~apTGsGKTl~~~ 71 (724)
.+..++.|.++ ++-+.||+|||.+..
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 44555688764 567899999998753
No 448
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=31.38 E-value=29 Score=32.11 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=14.2
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
-.++++|+|+|||...-.
T Consensus 28 ~~~i~G~NGsGKStll~a 45 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDA 45 (182)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 457899999999986543
No 449
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=31.25 E-value=26 Score=32.61 Aligned_cols=21 Identities=19% Similarity=0.185 Sum_probs=16.8
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.+.-+++.++.|+|||.....
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456788999999999986544
No 450
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=31.14 E-value=4.2e+02 Score=26.58 Aligned_cols=180 Identities=13% Similarity=0.025 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccc
Q 004900 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (724)
Q Consensus 89 aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH 168 (724)
.++....+.+.+.|....+................+.... ++-++..|-.. .......+.. ..+-+|++|...
T Consensus 79 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdGiIi~~~~~-~~~~~~~l~~----~~iPvV~~~~~~ 151 (339)
T 3h5o_A 79 ETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHR--PDGVLITGLSH-AEPFERILSQ----HALPVVYMMDLA 151 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTC--CSEEEEECSCC-CTTHHHHHHH----TTCCEEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCC--CCEEEEeCCCC-CHHHHHHHhc----CCCCEEEEeecC
Confidence 4455555666777877766555444443334444443332 44444333211 1222222222 236677776532
Q ss_pred cc--ccCCCCC-hHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHH---HHhhccCCCeEeeccCCCCceEEEEEeccch
Q 004900 169 CI--SSWGHDF-RPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV---MESLCLQNPLVLKSSFNRPNLFYEVRYKDLL 242 (724)
Q Consensus 169 ~l--~~~G~dF-rp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di---~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~~ 242 (724)
.- ...+.|. ...+.....|.. ..+..+.+++..........+ .+.+.-.. ...+...+........
T Consensus 152 ~~~~~~V~~D~~~~~~~a~~~L~~-~G~~~I~~i~~~~~~~~~~R~~Gf~~al~~~g-------~~~~~~~~~~~~~~~~ 223 (339)
T 3h5o_A 152 DDGRCCVGFSQEDAGAAITRHLLS-RGKRRIGFLGAQLDERVMKRLDGYRAALDAAD-------CRDAGLEWLDPQPSSM 223 (339)
T ss_dssp SSSCCEEECCHHHHHHHHHHHHHH-TTCCSEEEEEESCCHHHHHHHHHHHHHHHHTT-------CCCGGGEEEECSCCCH
T ss_pred CCCCeEEEECHHHHHHHHHHHHHH-CCCCeEEEEeCCCCccHHHHHHHHHHHHHHCC-------CCCCChheEecCCCCH
Confidence 11 0112232 233333444444 366778788776543322211 11111000 0011111111111222
Q ss_pred hhHHHHHHHHHHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 243 DDAYADLCSVLKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 243 ~~k~~~L~~lLk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
..-...+.++|...+ .+.-|||.+...+.-+...|++.|+.
T Consensus 224 ~~~~~~~~~ll~~~~-~~~ai~~~nD~~A~g~~~al~~~G~~ 264 (339)
T 3h5o_A 224 QMGADMLDRALAERP-DCDALFCCNDDLAIGALARSQQLGIA 264 (339)
T ss_dssp HHHHHHHHHHHHHCT-TCCEEEESSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCC-CCcEEEECChHHHHHHHHHHHHcCCC
Confidence 345566777777654 45788898888888888888887765
No 451
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=31.01 E-value=26 Score=33.44 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=14.7
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
.+++.+|.|+|||.....
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999986544
No 452
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=30.99 E-value=27 Score=31.87 Aligned_cols=21 Identities=24% Similarity=0.097 Sum_probs=16.9
Q ss_pred CcEEEEcCCCchHHHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~lpa 74 (724)
+.+++.++.|+|||.+..+-+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 568899999999998765543
No 453
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=30.79 E-value=4e+02 Score=26.20 Aligned_cols=179 Identities=11% Similarity=0.005 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHHHHHhhhhcCCccEEEEcccc
Q 004900 89 ALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMSKLKKIHSRGLLNLVAIDEAH 168 (724)
Q Consensus 89 aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~~L~~~~~~~~l~lIVIDEAH 168 (724)
.++....+.+.+.|....+................+.... ++-++..|.....+..+..+. . .+-+|++|...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiI~~~~~~~~~~~~~~l~---~--~iPvV~i~~~~ 104 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGR--VDGVLLQRREDFDDDMLAAVL---E--GVPAVTINSRV 104 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCS--SSEEEECCCTTCCHHHHHHHH---T--TSCEEEESCCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CcEEEEecCCCCcHHHHHHHh---C--CCCEEEECCcC
Confidence 3444445566777887776665544443344444444432 555555554333221222222 2 46788887432
Q ss_pred c--cccCCCCC-hHHHHHHHHHHhhCCCCCEEEEeecCChhhHH----HHHHhhccCCCeEeeccCCCCceEEEEEeccc
Q 004900 169 C--ISSWGHDF-RPSYRKLSSLRNYLPDVPILALTATAAPKVQK----DVMESLCLQNPLVLKSSFNRPNLFYEVRYKDL 241 (724)
Q Consensus 169 ~--l~~~G~dF-rp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~----di~~~l~l~~~~vi~~s~~r~ni~~~v~~~~~ 241 (724)
. +...+.|. ...+.....+.. .....+.+++......... -+.+.+.-.... . .+... ......
T Consensus 105 ~~~~~~V~~D~~~~g~~a~~~L~~-~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~g~~-----~-~~~~~--~~~~~~ 175 (303)
T 3kke_A 105 PGRVGSVILDDQKGGGIATEHLIT-LGHSRIAFISGTAIHDTAQRRKEGYLETLASAGLR-----S-EAAWV--VDAGWE 175 (303)
T ss_dssp TTCCCEEEECHHHHHHHHHHHHHH-TTCCSEEEEESCSSCHHHHHHHHHHHHHHHHTTCC-----C-CGGGE--EECCSS
T ss_pred CCCCCEEEECcHHHHHHHHHHHHH-CCCCeEEEEeCCCcCccHHHHHHHHHHHHHHcCCC-----C-CcceE--EecCCC
Confidence 1 11112222 233333334444 4667788887765432211 111111111100 0 00011 111112
Q ss_pred hhhHHHHHHHH-----HHhcCCceEEEEecccccHHHHHHHHHhCCCc
Q 004900 242 LDDAYADLCSV-----LKANGDTCAIVYCLERTTCDELSAYLSAGGIS 284 (724)
Q Consensus 242 ~~~k~~~L~~l-----Lk~~~~~~~IIf~~sr~~~e~La~~L~~~gi~ 284 (724)
.+.-+..+.++ |... ..+.-|||.+...+.-+...|++.|+.
T Consensus 176 ~~~~~~~~~~l~~~~~l~~~-~~~~ai~~~nd~~A~g~~~al~~~G~~ 222 (303)
T 3kke_A 176 ADAGSAALNTLYRGANLGKP-DGPTAVVVASVNAAVGALSTALRLGLR 222 (303)
T ss_dssp HHHHHHHHHHHHHHHCTTST-TSCSEEEESSHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHhcchhhhcCC-CCCcEEEECCHHHHHHHHHHHHHcCCC
Confidence 23445556666 6543 346788998888888888888877654
No 454
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=30.66 E-value=43 Score=36.74 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (724)
..++++.+|+|+|||....
T Consensus 201 ~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 3589999999999998654
No 455
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=30.53 E-value=3.3e+02 Score=25.28 Aligned_cols=51 Identities=18% Similarity=-0.042 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCchHHHHHHHHHHc----------------CCCeEEEEcCcHHHHHHHHHHHHHcCC
Q 004900 53 GRDCFCLMPTGGGKSMCYQIPALA----------------KPGIVLVVSPLIALMENQVIGLKEKGI 103 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~lpal~----------------~~~~vLVlsPl~aL~~qqv~~l~~~gi 103 (724)
|-.+-+....|-|=|+.+.+|... .+.++|||-.-..........|...|.
T Consensus 20 gG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~ 86 (206)
T 3mm4_A 20 MASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGV 86 (206)
T ss_dssp -----------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred CCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 345566677788888887777532 123567776665555555555666554
No 456
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=30.49 E-value=2.5e+02 Score=23.77 Aligned_cols=45 Identities=20% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHH
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQK 209 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~ 209 (724)
...++||+|- +.. ...+.-+..++...+++|++++|+........
T Consensus 47 ~~~dlvi~d~---~~~-----~~g~~~~~~l~~~~~~~pii~ls~~~~~~~~~ 91 (142)
T 2qxy_A 47 EKIDLVFVDV---FEG-----EESLNLIRRIREEFPDTKVAVLSAYVDKDLII 91 (142)
T ss_dssp SCCSEEEEEC---TTT-----HHHHHHHHHHHHHCTTCEEEEEESCCCHHHHH
T ss_pred cCCCEEEEeC---CCC-----CcHHHHHHHHHHHCCCCCEEEEECCCCHHHHH
Confidence 3478999995 221 22345567778888899999999987765444
No 457
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=30.48 E-value=49 Score=33.67 Aligned_cols=17 Identities=24% Similarity=0.032 Sum_probs=14.4
Q ss_pred CcEEEEcCCCchHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~ 70 (724)
.-+++.+|.|+|||...
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57889999999999743
No 458
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=30.09 E-value=2.4e+02 Score=23.45 Aligned_cols=48 Identities=21% Similarity=0.198 Sum_probs=30.9
Q ss_pred CCccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhHHHH
Q 004900 157 GLLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQKDV 211 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~~di 211 (724)
...++||+|-. +.+ ...+.-+..++...+++|++++|+..........
T Consensus 50 ~~~dlvi~d~~--l~~-----~~g~~~~~~l~~~~~~~~ii~~t~~~~~~~~~~~ 97 (130)
T 3eod_A 50 FTPDLMICDIA--MPR-----MNGLKLLEHIRNRGDQTPVLVISATENMADIAKA 97 (130)
T ss_dssp CCCSEEEECCC------------CHHHHHHHHHTTCCCCEEEEECCCCHHHHHHH
T ss_pred CCCCEEEEecC--CCC-----CCHHHHHHHHHhcCCCCCEEEEEcCCCHHHHHHH
Confidence 34788888842 111 1123556677788889999999999877654433
No 459
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=30.07 E-value=51 Score=33.09 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=33.0
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCc-eeeecCCCCH
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGIS-CAAYHAGLND 294 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~-v~~~H~~l~~ 294 (724)
.+.++||||.+-..+...+..|...|+. +..|.||+..
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~ 267 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSE 267 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHH
Confidence 4568999999988899999999999994 8899999853
No 460
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=30.05 E-value=4.5e+02 Score=26.75 Aligned_cols=146 Identities=14% Similarity=0.052 Sum_probs=67.6
Q ss_pred CCCchHHHHHHHHHHc-----CCCCC--CHHHHHHHHHHHc-------C-CcEEEEcCCCchHHHHHH-HHHHc-CCCeE
Q 004900 19 PLHEKEALVKLLRWHF-----GHAQF--RDKQLDAIQAVLS-------G-RDCFCLMPTGGGKSMCYQ-IPALA-KPGIV 81 (724)
Q Consensus 19 ~~~~~~~l~~~L~~~f-----G~~~l--r~~Q~eaI~ail~-------g-~dvlv~apTGsGKTl~~~-lpal~-~~~~v 81 (724)
+++.++++.+++.+.+ +|... .+-=++.+...+. . .++++ |++|-....+ +-++. .+..+
T Consensus 42 ~~~~~~~v~~a~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~---t~g~~~al~~~~~~l~~~gd~v 118 (391)
T 3h14_A 42 GTGAPRGAVEALAKSLETDALGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVI---TPGSSGGFLLAFTALFDSGDRV 118 (391)
T ss_dssp SSCSCHHHHHHHHHHHC----------CCHHHHHHHHHHHHHHHCCCCCGGGEEE---ESSHHHHHHHHHHHHCCTTCEE
T ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEE---ecChHHHHHHHHHHhcCCCCEE
Confidence 3555677777776644 33322 1222344444442 2 34443 3344443332 33343 35677
Q ss_pred EEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCcc-EEEeCcc----cccChhHHHHHHhhhhc
Q 004900 82 LVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLR-LLYVTPE----LTATPGFMSKLKKIHSR 156 (724)
Q Consensus 82 LVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~-il~~TPE----~i~T~~~l~~L~~~~~~ 156 (724)
|+..|+-.-.. ..+...|.....+......... ...+.+... ..+ +++++|. .+.....+..+......
T Consensus 119 l~~~p~~~~~~---~~~~~~g~~~~~v~~~~~~~~~-~d~~~l~~~--~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~ 192 (391)
T 3h14_A 119 GIGAPGYPSYR---QILRALGLVPVDLPTAPENRLQ-PVPADFAGL--DLAGLMVASPANPTGTMLDHAAMGALIEAAQA 192 (391)
T ss_dssp EEEESCCHHHH---HHHHHTTCEEEEEECCGGGTTS-CCHHHHTTS--CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred EEcCCCCccHH---HHHHHcCCEEEEeecCcccCCC-CCHHHHHhc--CCeEEEECCCCCCCCccCCHHHHHHHHHHHHH
Confidence 88888865443 3445667776655432111000 001111111 234 4445553 23333445555554433
Q ss_pred CCccEEEEccccccccCC
Q 004900 157 GLLNLVAIDEAHCISSWG 174 (724)
Q Consensus 157 ~~l~lIVIDEAH~l~~~G 174 (724)
.. -+||+||+|....++
T Consensus 193 ~~-~~li~De~~~~~~~~ 209 (391)
T 3h14_A 193 QG-ASFISDEIYHGIEYE 209 (391)
T ss_dssp TT-CEEEEECTTTTCBSS
T ss_pred cC-CEEEEECcchhcccC
Confidence 33 378999999865443
No 461
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=29.99 E-value=25 Score=33.50 Aligned_cols=19 Identities=21% Similarity=-0.143 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCchHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~ 71 (724)
|.-+.+.+|+|+|||...-
T Consensus 6 ~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH
Confidence 4456789999999997653
No 462
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=29.96 E-value=27 Score=32.45 Aligned_cols=20 Identities=15% Similarity=-0.056 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
+.-+++.++.|+|||.....
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34578899999999986543
No 463
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=29.89 E-value=29 Score=32.76 Aligned_cols=16 Identities=19% Similarity=0.117 Sum_probs=13.4
Q ss_pred cEEEEcCCCchHHHHH
Q 004900 55 DCFCLMPTGGGKSMCY 70 (724)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (724)
.+.+++|.|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999754
No 464
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=29.87 E-value=23 Score=33.89 Aligned_cols=18 Identities=22% Similarity=0.049 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCchHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (724)
|.-+.+.+|+|+|||...
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445678999999999644
No 465
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=29.82 E-value=56 Score=33.08 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=35.0
Q ss_pred HHHHHcC-----CcEEEE-cCCCchHHHHHHH--HHHcCCCeEEEEcCcHHHHHHHHHHHHHcCCce
Q 004900 47 IQAVLSG-----RDCFCL-MPTGGGKSMCYQI--PALAKPGIVLVVSPLIALMENQVIGLKEKGIAG 105 (724)
Q Consensus 47 I~ail~g-----~dvlv~-apTGsGKTl~~~l--pal~~~~~vLVlsPl~aL~~qqv~~l~~~gi~~ 105 (724)
+..++.| ..+++. .|.|+|||+++++ ..+.++..+++++-.-.. .+..+.+..+|+..
T Consensus 10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~-~~l~~~~~~~G~dl 75 (260)
T 3bs4_A 10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPL-QLIIRILSRFGVDV 75 (260)
T ss_dssp HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCH-HHHHHHHHHTTCCH
T ss_pred HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCH-HHHHHHHHHcCCCH
Confidence 4455544 456777 4555555565543 456778888888744332 45556677777654
No 466
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=29.79 E-value=31 Score=32.40 Aligned_cols=21 Identities=14% Similarity=-0.081 Sum_probs=16.7
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.|.-+++.++.|+|||...-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 456688999999999986543
No 467
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=29.63 E-value=31 Score=33.19 Aligned_cols=20 Identities=20% Similarity=0.193 Sum_probs=16.0
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
+..+++.++.|+|||.....
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45688999999999986543
No 468
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=29.63 E-value=33 Score=32.76 Aligned_cols=32 Identities=16% Similarity=-0.020 Sum_probs=21.9
Q ss_pred EEEEcCCCchHHHHHHHHHHcCCCeEEEEcCcH
Q 004900 56 CFCLMPTGGGKSMCYQIPALAKPGIVLVVSPLI 88 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lpal~~~~~vLVlsPl~ 88 (724)
++|.+++|||||.-..--+.. +..+++|..-.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999755433333 55677776543
No 469
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=29.57 E-value=34 Score=31.72 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
.-+++.++.|+|||.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3578999999999987544
No 470
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=29.50 E-value=36 Score=31.72 Aligned_cols=21 Identities=19% Similarity=0.207 Sum_probs=16.6
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.+.-+++.+++|+|||.....
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456688999999999986543
No 471
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=29.46 E-value=25 Score=33.66 Aligned_cols=21 Identities=14% Similarity=0.029 Sum_probs=15.9
Q ss_pred cCCcEEEEcCCCchHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~l 72 (724)
.|.-+.+++|+|+|||.....
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345678899999999975543
No 472
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=29.44 E-value=34 Score=32.44 Aligned_cols=20 Identities=15% Similarity=-0.228 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
+.-+.+.+++|+|||....+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~ 40 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKN 40 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44567899999999986544
No 473
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=29.40 E-value=22 Score=42.78 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=46.6
Q ss_pred CceEEEEecccccHHHHHHHHHhC----CCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcccc-----ccc-c-CCCC
Q 004900 258 DTCAIVYCLERTTCDELSAYLSAG----GISCAAYHAGLNDKARSSVLDDWISSRKQVVVATVAF-----GMG-I-DRKD 326 (724)
Q Consensus 258 ~~~~IIf~~sr~~~e~La~~L~~~----gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~a~-----g~G-I-Dip~ 326 (724)
+.++||.|+++.-+.+++..+... ++.+..+||+.+...+...+. +..+|+|+|.-. ..+ + .+.+
T Consensus 296 ~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~G~~~~~~~~~~~~----~~~~IvI~Tp~~L~~~l~~~~~~~l~~ 371 (936)
T 4a2w_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (936)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECCC-----CCHHHH----HHCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEECCcchhhHHHHhc----cCCCEEEecHHHHHHHHHcCccccccC
Confidence 567999999999998888777664 899999999987655332221 236799999532 222 2 4566
Q ss_pred cceEEe
Q 004900 327 VRLVCH 332 (724)
Q Consensus 327 V~~VI~ 332 (724)
+++||.
T Consensus 372 ~~liVi 377 (936)
T 4a2w_A 372 FTLMIF 377 (936)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 788773
No 474
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=29.36 E-value=30 Score=31.53 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=15.4
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
+-+++.++.|+|||.....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3578999999999986544
No 475
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=29.35 E-value=4.9e+02 Score=26.80 Aligned_cols=147 Identities=11% Similarity=-0.001 Sum_probs=68.9
Q ss_pred CCCchHHHHHHHHH-----HcCCCCC--CHHHHHHHHHHHcC---Cc---EEEEcCCCchHHHHHH-HHHHcC-CCeEEE
Q 004900 19 PLHEKEALVKLLRW-----HFGHAQF--RDKQLDAIQAVLSG---RD---CFCLMPTGGGKSMCYQ-IPALAK-PGIVLV 83 (724)
Q Consensus 19 ~~~~~~~l~~~L~~-----~fG~~~l--r~~Q~eaI~ail~g---~d---vlv~apTGsGKTl~~~-lpal~~-~~~vLV 83 (724)
++...+.+.+++.+ .++|... .+.=++++...+.+ .+ -++. |.+|....+. +-++.. +..+|+
T Consensus 53 ~~~~~~~v~~a~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~--t~g~~~al~~~~~~~~~~gd~Vl~ 130 (413)
T 3t18_A 53 KIIALPSVYDRLDEMDRSHIASYAPIEGEKDYRKIVIDTLFGPYKPEGYISAIA--TPGGTGAIRSAIFSYLDEGDPLIC 130 (413)
T ss_dssp CBCCCHHHHHHHHHSCHHHHHSCCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEE--ESHHHHHHHHHHHHHCCSSCEEEE
T ss_pred CcCChHHHHHHHHhcCcccccCcCCCCCCHHHHHHHHHHHhcccCccccCcEEE--cCccHHHHHHHHHHhcCCCCEEEE
Confidence 45566777777665 2355433 23334445443322 22 3333 4455554433 334444 457778
Q ss_pred EcCcHHHHHHHHHHHHHcCCceeeecc-----cchHHHHHHHHhhhhcCCCCccEEEeCc-c----cccChhHHHHHHhh
Q 004900 84 VSPLIALMENQVIGLKEKGIAGEFLSS-----TQTMQVKTKIYEDLDSGKPSLRLLYVTP-E----LTATPGFMSKLKKI 153 (724)
Q Consensus 84 lsPl~aL~~qqv~~l~~~gi~~~~l~s-----~~~~~~~~~i~~~l~~~~~~~~il~~TP-E----~i~T~~~l~~L~~~ 153 (724)
..|+-.-..+. +...|.....+.. .....................-+++.+| . .+.+...+..+.+.
T Consensus 131 ~~p~~~~~~~~---~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~ 207 (413)
T 3t18_A 131 HDYYWAPYRKI---CEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLINSPGNNPTGYSLSDEEWDEVITF 207 (413)
T ss_dssp ESSCCTHHHHH---HHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCCCHHHHHHHHHH
T ss_pred CCCCcccHHHH---HHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEeCCCCCCCCCCCCHHHHHHHHHH
Confidence 88876554433 3445666554432 1222222222211100011122445556 2 34444555555554
Q ss_pred hh------cCCccEEEEccccccc
Q 004900 154 HS------RGLLNLVAIDEAHCIS 171 (724)
Q Consensus 154 ~~------~~~l~lIVIDEAH~l~ 171 (724)
.. ... -+||+||+|.-.
T Consensus 208 ~~~~~~~~~~~-~~li~De~y~~~ 230 (413)
T 3t18_A 208 LKEKAEDKDKK-ITLIVDVAYLEF 230 (413)
T ss_dssp HHHHTTSTTCE-EEEEEECTTGGG
T ss_pred HHHHhhccCCc-EEEEEecccccc
Confidence 43 222 378999998543
No 476
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=29.33 E-value=32 Score=33.16 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
+.-+++.+|.|+|||.....
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999986544
No 477
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=29.18 E-value=40 Score=34.81 Aligned_cols=32 Identities=19% Similarity=0.225 Sum_probs=20.8
Q ss_pred CcEEEEcCCCchHHHHHH-HHHHc--CCCeEEEEc
Q 004900 54 RDCFCLMPTGGGKSMCYQ-IPALA--KPGIVLVVS 85 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~-lpal~--~~~~vLVls 85 (724)
.-+.+++|+|+|||...- +..+. .++.+++..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 346789999999997543 33222 456666664
No 478
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=28.93 E-value=28 Score=32.15 Aligned_cols=17 Identities=24% Similarity=0.050 Sum_probs=13.8
Q ss_pred cEEEEcCCCchHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~ 71 (724)
-+++.++.|+|||....
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999997653
No 479
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=28.87 E-value=1.1e+02 Score=32.89 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=13.8
Q ss_pred EEEEcCCCchHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 56 vlv~apTGsGKTl~~~l 72 (724)
++++++.|+|||.....
T Consensus 261 Iil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp EEEESCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986543
No 480
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=28.81 E-value=1.9e+02 Score=30.32 Aligned_cols=107 Identities=14% Similarity=0.127 Sum_probs=54.4
Q ss_pred CchHHHHH-HHHHHcC-CCeEEEEcCcHHHHHHHHHHHHHcCCceeeeccc---chHHHHHHHHhhhh------cCCCCc
Q 004900 63 GGGKSMCY-QIPALAK-PGIVLVVSPLIALMENQVIGLKEKGIAGEFLSST---QTMQVKTKIYEDLD------SGKPSL 131 (724)
Q Consensus 63 GsGKTl~~-~lpal~~-~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~---~~~~~~~~i~~~l~------~~~~~~ 131 (724)
.+|....+ ++-++.. +..+++..|+-.-..+. +...|.....+... .............. ...+..
T Consensus 115 ~G~~~al~~~~~~l~~~gd~Vlv~~p~y~~~~~~---~~~~g~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~ 191 (425)
T 2r2n_A 115 SGSQQGLCKVFEMIINPGDNVLLDEPAYSGTLQS---LHPLGCNIINVASDESGIVPDSLRDILSRWKPEDAKNPQKNTP 191 (425)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEESSCCHHHHHH---HGGGTCEEEEECEETTEECHHHHHHHHTTSCSTTSSSTTSCCC
T ss_pred CcHHHHHHHHHHHhCCCCCEEEEeCCCcHHHHHH---HHHcCCEEEEeCcCCCCCCHHHHHHHHHhhhccccccccCCCc
Confidence 34444433 3344444 45788888986654433 34566665544321 11222222221100 011246
Q ss_pred cEEEeCcc------cccChhHHHHHHhhhhcCCccEEEEccccccccC
Q 004900 132 RLLYVTPE------LTATPGFMSKLKKIHSRGLLNLVAIDEAHCISSW 173 (724)
Q Consensus 132 ~il~~TPE------~i~T~~~l~~L~~~~~~~~l~lIVIDEAH~l~~~ 173 (724)
+++|++|- .+.+...+..+........+ +||+||+|....+
T Consensus 192 ~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~-~li~De~~~~~~~ 238 (425)
T 2r2n_A 192 KFLYTVPNGNNPTGNSLTSERKKEIYELARKYDF-LIIEDDPYYFLQF 238 (425)
T ss_dssp SEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTC-EEEEECTTGGGBS
T ss_pred eEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCC-EEEEECCcccccC
Confidence 77776542 44555556666555544333 7899999986544
No 481
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=28.66 E-value=29 Score=32.04 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
-+++.++.|+|||.....
T Consensus 8 ~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999986544
No 482
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=28.57 E-value=32 Score=35.57 Aligned_cols=32 Identities=13% Similarity=-0.022 Sum_probs=22.2
Q ss_pred EEEEcCCCchHHHHHHHH-HHcCCCeEEEEcCc
Q 004900 56 CFCLMPTGGGKSMCYQIP-ALAKPGIVLVVSPL 87 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lp-al~~~~~vLVlsPl 87 (724)
+++.++.|+|||...-.- ....+.++.||.|.
T Consensus 7 ~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred EEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 578999999999864332 23345677777775
No 483
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=28.55 E-value=1.8e+02 Score=32.46 Aligned_cols=81 Identities=10% Similarity=0.023 Sum_probs=53.2
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCc--------eeeecccchHHHHHHHHhhhhcCCCCccEEEeCcccccChhHHH
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIA--------GEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPELTATPGFMS 148 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~--------~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE~i~T~~~l~ 148 (724)
..+++||+++++.-+....+.|...+.. +..+++... ..+..+......+...+.++++|..++.+-
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~G---- 512 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTG---- 512 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTT----
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcC----
Confidence 4589999999999999988888876543 334555443 346677777777655566666665555441
Q ss_pred HHHhhhhcCCccEEEEccc
Q 004900 149 KLKKIHSRGLLNLVAIDEA 167 (724)
Q Consensus 149 ~L~~~~~~~~l~lIVIDEA 167 (724)
.+...+++||++..
T Consensus 513 -----iDip~v~~Vi~~~~ 526 (590)
T 3h1t_A 513 -----VDAPTCKNVVLARV 526 (590)
T ss_dssp -----CCCTTEEEEEEESC
T ss_pred -----ccchheeEEEEEec
Confidence 12334677777554
No 484
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=28.49 E-value=2.9e+02 Score=23.86 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=29.6
Q ss_pred CccEEEEccccccccCCCCChHHHHHHHHHHhhCCCCCEEEEeecCChhhH
Q 004900 158 LLNLVAIDEAHCISSWGHDFRPSYRKLSSLRNYLPDVPILALTATAAPKVQ 208 (724)
Q Consensus 158 ~l~lIVIDEAH~l~~~G~dFrp~y~~L~~l~~~~p~~pil~LSAT~~~~v~ 208 (724)
..++||+|-.- .+ ...+.-+..++...+.+|++++|+.......
T Consensus 51 ~~dlvi~d~~l--~~-----~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~~ 94 (154)
T 2rjn_A 51 SVQLVISDMRM--PE-----MGGEVFLEQVAKSYPDIERVVISGYADAQAT 94 (154)
T ss_dssp CCSEEEEESSC--SS-----SCHHHHHHHHHHHCTTSEEEEEECGGGHHHH
T ss_pred CCCEEEEecCC--CC-----CCHHHHHHHHHHhCCCCcEEEEecCCCHHHH
Confidence 37889998421 11 1124556677778889999999998765443
No 485
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=28.38 E-value=27 Score=37.47 Aligned_cols=24 Identities=33% Similarity=0.571 Sum_probs=17.8
Q ss_pred HHHHHcCCcE--EEEcCCCchHHHHH
Q 004900 47 IQAVLSGRDC--FCLMPTGGGKSMCY 70 (724)
Q Consensus 47 I~ail~g~dv--lv~apTGsGKTl~~ 70 (724)
+..++.|.++ ++-+.||+|||.+.
T Consensus 108 v~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 108 VQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHHhcCCCceEEEEeCCCCCCCceEe
Confidence 4455678764 56779999999864
No 486
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=28.31 E-value=42 Score=34.93 Aligned_cols=31 Identities=16% Similarity=0.142 Sum_probs=20.0
Q ss_pred cEEEEcCCCchHHHHHH-HHHH--cCCCeEEEEc
Q 004900 55 DCFCLMPTGGGKSMCYQ-IPAL--AKPGIVLVVS 85 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~-lpal--~~~~~vLVls 85 (724)
-+++++++|+|||.... +... ..+++++++-
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 36678999999996543 3222 2466666663
No 487
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=28.29 E-value=35 Score=32.56 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCchHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCY 70 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~ 70 (724)
|.-+.+++|+|+|||...
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 345789999999999754
No 488
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=28.27 E-value=31 Score=32.67 Aligned_cols=18 Identities=17% Similarity=0.010 Sum_probs=14.3
Q ss_pred EEEEcCCCchHHHHHHHH
Q 004900 56 CFCLMPTGGGKSMCYQIP 73 (724)
Q Consensus 56 vlv~apTGsGKTl~~~lp 73 (724)
+.+.+|.|+|||...-+-
T Consensus 5 i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 578999999999865443
No 489
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=28.19 E-value=23 Score=37.62 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=12.8
Q ss_pred EEEEcCCCchHHHHH
Q 004900 56 CFCLMPTGGGKSMCY 70 (724)
Q Consensus 56 vlv~apTGsGKTl~~ 70 (724)
.++.+|||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 578999999999753
No 490
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=27.84 E-value=33 Score=34.09 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=17.3
Q ss_pred cCCcEEEEcCCCchHHHHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~lpa 74 (724)
.|.-+.+.+|+|+|||...-+-+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 34567889999999998655433
No 491
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=27.83 E-value=30 Score=31.98 Aligned_cols=20 Identities=20% Similarity=0.262 Sum_probs=15.7
Q ss_pred cCCcEEEEcCCCchHHHHHH
Q 004900 52 SGRDCFCLMPTGGGKSMCYQ 71 (724)
Q Consensus 52 ~g~dvlv~apTGsGKTl~~~ 71 (724)
.|.-+++.++.|+|||...-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35567889999999997643
No 492
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=27.68 E-value=40 Score=37.79 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=16.8
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
|..+++.+|+|+|||.....
T Consensus 108 g~~vll~Gp~GtGKTtlar~ 127 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKS 127 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56799999999999986544
No 493
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=27.54 E-value=24 Score=40.28 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=14.6
Q ss_pred cEEEEcCCCchHHHHH
Q 004900 55 DCFCLMPTGGGKSMCY 70 (724)
Q Consensus 55 dvlv~apTGsGKTl~~ 70 (724)
++++.+|+|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999854
No 494
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=27.46 E-value=34 Score=42.02 Aligned_cols=64 Identities=14% Similarity=0.033 Sum_probs=49.3
Q ss_pred CCceEEEEecccccHHHHHHHHHhCCCceeeecCCCCHHHHHHHHHHhhcCCceEEEEcc-----ccccc-cCCCCcceE
Q 004900 257 GDTCAIVYCLERTTCDELSAYLSAGGISCAAYHAGLNDKARSSVLDDWISSRKQVVVATV-----AFGMG-IDRKDVRLV 330 (724)
Q Consensus 257 ~~~~~IIf~~sr~~~e~La~~L~~~gi~v~~~H~~l~~~eR~~vl~~F~~g~~~VLVAT~-----a~g~G-IDip~V~~V 330 (724)
.+.++||.++++.-+.+.+..|......+..++|+++ .+++.+|+|+|. .+..| ..+.++.+|
T Consensus 226 ~g~rvlvl~PtraLa~Q~~~~l~~~~~~VglltGd~~-----------~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lV 294 (1108)
T 3l9o_A 226 NKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDIT-----------INPDAGCLVMTTEILRSMLYRGSEVMREVAWV 294 (1108)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHHHTSSEEEECSSCB-----------CCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEE
T ss_pred cCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEeCccc-----------cCCCCCEEEeChHHHHHHHHcCccccccCCEE
Confidence 3568999999999999999999886558888999886 346788999993 44444 335567777
Q ss_pred E
Q 004900 331 C 331 (724)
Q Consensus 331 I 331 (724)
|
T Consensus 295 V 295 (1108)
T 3l9o_A 295 I 295 (1108)
T ss_dssp E
T ss_pred E
Confidence 7
No 495
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=27.39 E-value=36 Score=32.10 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.3
Q ss_pred CcEEEEcCCCchHHHHHHH
Q 004900 54 RDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 54 ~dvlv~apTGsGKTl~~~l 72 (724)
.-+++.++.|+|||.....
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4578899999999986544
No 496
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=27.13 E-value=32 Score=32.49 Aligned_cols=20 Identities=25% Similarity=0.006 Sum_probs=15.4
Q ss_pred cEEEEcCCCchHHHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQIPA 74 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~lpa 74 (724)
.+.+.++.|+|||...-+-+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 46789999999998755433
No 497
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=27.09 E-value=36 Score=33.16 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCchHHHHHHH
Q 004900 53 GRDCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 53 g~dvlv~apTGsGKTl~~~l 72 (724)
+..+++.+++|+|||.....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45788999999999986544
No 498
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=27.02 E-value=49 Score=31.12 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=14.4
Q ss_pred cEEEEcCCCchHHHHHHH
Q 004900 55 DCFCLMPTGGGKSMCYQI 72 (724)
Q Consensus 55 dvlv~apTGsGKTl~~~l 72 (724)
-+++.++.|+|||.....
T Consensus 17 ~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467899999999986533
No 499
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=26.92 E-value=4.9e+02 Score=26.29 Aligned_cols=142 Identities=13% Similarity=0.165 Sum_probs=68.0
Q ss_pred CCCchHHHHHHHHHHc-----CCCCCCHHHHHHHHHHHc---C-----CcEEEEcCCCchHHHHH-HHHHHcC-CCeEEE
Q 004900 19 PLHEKEALVKLLRWHF-----GHAQFRDKQLDAIQAVLS---G-----RDCFCLMPTGGGKSMCY-QIPALAK-PGIVLV 83 (724)
Q Consensus 19 ~~~~~~~l~~~L~~~f-----G~~~lr~~Q~eaI~ail~---g-----~dvlv~apTGsGKTl~~-~lpal~~-~~~vLV 83 (724)
+++.++.+.+++.+.+ ++....+--.+.+...+. | .++++ |.+|-.... .+-++.. +..+|+
T Consensus 38 ~~~~~~~v~~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~---~~g~~~a~~~~~~~l~~~gd~vl~ 114 (391)
T 3dzz_A 38 DFKIAPEIMASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVF---ASGVVPAISAMVRQFTSPGDQILV 114 (391)
T ss_dssp SSCCCHHHHHHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEE---ESCHHHHHHHHHHHHSCTTCEEEE
T ss_pred CCCCCHHHHHHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEE---CCCHHHHHHHHHHHhCCCCCeEEE
Confidence 4566788888887764 333332222333333321 1 23443 233443333 3334444 456677
Q ss_pred EcCcHHHHHHHHHHHHHcCCceeeeccc-------chHHHHHHHHhhhhcCCCCccEE-EeCcc----cccChhHHHHHH
Q 004900 84 VSPLIALMENQVIGLKEKGIAGEFLSST-------QTMQVKTKIYEDLDSGKPSLRLL-YVTPE----LTATPGFMSKLK 151 (724)
Q Consensus 84 lsPl~aL~~qqv~~l~~~gi~~~~l~s~-------~~~~~~~~i~~~l~~~~~~~~il-~~TPE----~i~T~~~l~~L~ 151 (724)
..|+-.-..+ .+...|.....+... ..... +...+.. +..+++ +.+|. .+.++..+..+.
T Consensus 115 ~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~---l~~~l~~--~~~~~v~i~~p~nptG~~~~~~~l~~i~ 186 (391)
T 3dzz_A 115 QEPVYNMFYS---VIEGNGRRVISSDLIYENSKYSVNWAD---LEEKLAT--PSVRMMVFCNPHNPIGYAWSEEEVKRIA 186 (391)
T ss_dssp CSSCCHHHHH---HHHHTTCEEEECCCEEETTEEECCHHH---HHHHHTS--TTEEEEEEESSBTTTTBCCCHHHHHHHH
T ss_pred CCCCcHHHHH---HHHHcCCEEEEeeeeecCCceeecHHH---HHHHHhc--cCceEEEEECCCCCCCcccCHHHHHHHH
Confidence 7787654333 344567665554331 12222 2222221 234444 44453 233334555555
Q ss_pred hhhhcCCccEEEEcccccccc
Q 004900 152 KIHSRGLLNLVAIDEAHCISS 172 (724)
Q Consensus 152 ~~~~~~~l~lIVIDEAH~l~~ 172 (724)
....... -+||+||+|....
T Consensus 187 ~~~~~~~-~~li~De~~~~~~ 206 (391)
T 3dzz_A 187 ELCAKHQ-VLLISDEIHGDLV 206 (391)
T ss_dssp HHHHHTT-CEEEEECTTTTCB
T ss_pred HHHHHCC-CEEEEeccccccc
Confidence 5444333 3789999997544
No 500
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=26.92 E-value=95 Score=33.60 Aligned_cols=57 Identities=16% Similarity=0.067 Sum_probs=44.3
Q ss_pred CCCeEEEEcCcHHHHHHHHHHHHHcCCceeeecccchHHHHHHHHhhhhcCCCCccEEEeCcc
Q 004900 77 KPGIVLVVSPLIALMENQVIGLKEKGIAGEFLSSTQTMQVKTKIYEDLDSGKPSLRLLYVTPE 139 (724)
Q Consensus 77 ~~~~vLVlsPl~aL~~qqv~~l~~~gi~~~~l~s~~~~~~~~~i~~~l~~~~~~~~il~~TPE 139 (724)
..+.+||++|++.-++.....|+..|+.+..+++... ..+......+. .+++++|..
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~--~~vLVaT~v 243 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTD--WDFVVTTDI 243 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSC--CSEEEECGG
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCC--ceEEEECCH
Confidence 3678999999999999999999999999888887554 34555555554 788888753
Done!