Query 004901
Match_columns 724
No_of_seqs 523 out of 2409
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 14:46:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4271 Rho-GTPase activating 100.0 5.1E-46 1.1E-50 420.5 21.0 607 97-721 286-936 (1100)
2 cd04402 RhoGAP_ARHGAP20 RhoGAP 100.0 3.6E-40 7.9E-45 331.2 18.0 192 165-376 1-192 (192)
3 cd04372 RhoGAP_chimaerin RhoGA 100.0 9E-40 1.9E-44 328.8 19.8 189 166-372 1-194 (194)
4 cd04386 RhoGAP_nadrin RhoGAP_n 100.0 1.3E-39 2.9E-44 329.8 20.0 197 163-375 2-202 (203)
5 cd04390 RhoGAP_ARHGAP22_24_25 100.0 2.3E-39 5.1E-44 327.1 19.2 191 164-372 1-199 (199)
6 cd04407 RhoGAP_myosin_IXB RhoG 100.0 6.4E-39 1.4E-43 320.5 19.6 185 166-367 1-186 (186)
7 cd04391 RhoGAP_ARHGAP18 RhoGAP 100.0 5.9E-39 1.3E-43 328.1 19.6 200 165-376 1-209 (216)
8 KOG1451 Oligophrenin-1 and rel 100.0 2.2E-37 4.9E-42 336.5 31.7 303 15-376 261-571 (812)
9 cd04375 RhoGAP_DLC1 RhoGAP_DLC 100.0 8.7E-39 1.9E-43 327.3 18.9 209 163-375 2-217 (220)
10 cd04381 RhoGap_RalBP1 RhoGap_R 100.0 5.5E-39 1.2E-43 320.0 16.9 176 166-374 1-181 (182)
11 cd04384 RhoGAP_CdGAP RhoGAP_Cd 100.0 1.8E-38 3.9E-43 319.4 18.1 190 164-367 1-195 (195)
12 cd04397 RhoGAP_fLRG1 RhoGAP_fL 100.0 1.8E-38 3.9E-43 323.8 18.2 192 166-376 1-211 (213)
13 cd04383 RhoGAP_srGAP RhoGAP_sr 100.0 2.9E-38 6.3E-43 316.3 18.6 184 164-367 1-188 (188)
14 cd04404 RhoGAP-p50rhoGAP RhoGA 100.0 4.4E-38 9.4E-43 316.8 19.8 190 162-372 2-195 (195)
15 cd04403 RhoGAP_ARHGAP27_15_12_ 100.0 3.7E-38 8.1E-43 315.3 18.6 183 166-367 1-187 (187)
16 cd04395 RhoGAP_ARHGAP21 RhoGAP 100.0 5.6E-38 1.2E-42 316.3 19.8 190 165-372 1-196 (196)
17 cd04408 RhoGAP_GMIP RhoGAP_GMI 100.0 7E-38 1.5E-42 316.4 18.7 186 166-367 1-200 (200)
18 cd04406 RhoGAP_myosin_IXA RhoG 100.0 6.8E-38 1.5E-42 313.1 17.9 183 166-365 1-184 (186)
19 cd04394 RhoGAP-ARHGAP11A RhoGA 100.0 1.2E-37 2.5E-42 315.3 19.2 195 165-376 1-199 (202)
20 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 100.0 2.3E-37 5E-42 313.8 19.2 187 177-376 6-204 (206)
21 cd04396 RhoGAP_fSAC7_BAG7 RhoG 100.0 2.9E-37 6.4E-42 317.3 19.2 188 165-372 1-225 (225)
22 cd04377 RhoGAP_myosin_IX RhoGA 100.0 4.1E-37 8.8E-42 307.6 18.7 185 166-367 1-186 (186)
23 cd04398 RhoGAP_fRGD1 RhoGAP_fR 100.0 2.9E-37 6.2E-42 310.1 17.6 185 166-372 1-192 (192)
24 cd04400 RhoGAP_fBEM3 RhoGAP_fB 100.0 2.6E-37 5.7E-42 310.0 17.3 177 165-374 1-189 (190)
25 cd04378 RhoGAP_GMIP_PARG1 RhoG 100.0 3.4E-37 7.3E-42 312.3 18.2 187 166-367 1-203 (203)
26 cd04373 RhoGAP_p190 RhoGAP_p19 100.0 7.4E-37 1.6E-41 305.4 18.7 161 166-327 1-163 (185)
27 cd04409 RhoGAP_PARG1 RhoGAP_PA 100.0 7.8E-37 1.7E-41 311.2 19.0 187 166-367 1-211 (211)
28 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 100.0 2.8E-36 6E-41 303.7 19.8 163 166-329 1-167 (196)
29 cd04393 RhoGAP_FAM13A1a RhoGAP 100.0 2.5E-36 5.4E-41 302.7 19.1 184 164-367 1-189 (189)
30 cd04379 RhoGAP_SYD1 RhoGAP_SYD 100.0 4.3E-36 9.4E-41 304.5 20.0 195 166-368 1-206 (207)
31 cd04392 RhoGAP_ARHGAP19 RhoGAP 100.0 2.7E-36 5.8E-41 306.5 18.4 186 166-376 1-200 (208)
32 KOG4407 Predicted Rho GTPase-a 100.0 5.3E-37 1.1E-41 352.9 10.8 336 18-376 922-1358(1973)
33 cd04385 RhoGAP_ARAP RhoGAP_ARA 100.0 2.6E-35 5.6E-40 294.1 18.6 180 167-368 2-184 (184)
34 cd04382 RhoGAP_MgcRacGAP RhoGA 100.0 5E-35 1.1E-39 293.9 19.1 178 177-371 14-192 (193)
35 cd04399 RhoGAP_fRGD2 RhoGAP_fR 100.0 2.9E-35 6.3E-40 299.7 17.6 189 166-374 1-210 (212)
36 cd04389 RhoGAP_KIAA1688 RhoGAP 100.0 4.4E-35 9.6E-40 293.0 17.2 178 166-367 1-187 (187)
37 cd04374 RhoGAP_Graf RhoGAP_Gra 100.0 1.1E-34 2.4E-39 293.4 17.5 171 178-367 26-203 (203)
38 cd04388 RhoGAP_p85 RhoGAP_p85: 100.0 3.2E-34 6.9E-39 288.0 17.7 177 170-368 5-184 (200)
39 KOG1450 Predicted Rho GTPase-a 100.0 1.1E-31 2.5E-36 301.9 19.2 321 34-373 270-649 (650)
40 KOG1117 Rho- and Arf-GTPase ac 100.0 8.9E-32 1.9E-36 302.3 17.8 324 16-376 489-900 (1186)
41 smart00324 RhoGAP GTPase-activ 100.0 4.1E-31 8.8E-36 260.6 17.8 170 179-367 2-173 (174)
42 KOG4270 GTPase-activator prote 100.0 3.7E-29 8.1E-34 281.2 28.7 203 159-377 140-348 (577)
43 KOG2200 Tumour suppressor prot 100.0 3.1E-30 6.8E-35 282.6 15.2 211 162-376 297-514 (674)
44 cd04380 RhoGAP_OCRL1 RhoGAP_OC 100.0 8.6E-30 1.9E-34 261.2 15.3 142 179-327 49-195 (220)
45 cd00159 RhoGAP RhoGAP: GTPase- 100.0 6.2E-29 1.3E-33 242.5 18.4 168 181-367 1-169 (169)
46 KOG4269 Rac GTPase-activating 100.0 6.9E-30 1.5E-34 288.7 12.6 184 160-376 894-1087(1112)
47 KOG4406 CDC42 Rho GTPase-activ 100.0 5.1E-28 1.1E-32 257.3 15.1 201 157-377 245-450 (467)
48 PF00620 RhoGAP: RhoGAP domain 100.0 2.1E-28 4.6E-33 235.2 10.1 145 181-326 1-147 (151)
49 KOG2710 Rho GTPase-activating 99.9 1.5E-26 3.3E-31 251.3 15.2 205 161-376 62-295 (412)
50 KOG4724 Predicted Rho GTPase-a 99.9 3.2E-26 7E-31 253.9 7.9 241 159-422 76-316 (741)
51 PF14389 Lzipper-MIP1: Leucine 99.9 1.5E-24 3.2E-29 190.6 10.3 87 614-700 1-88 (88)
52 KOG1453 Chimaerin and related 99.9 3E-24 6.4E-29 258.5 11.6 162 165-327 602-771 (918)
53 KOG3564 GTPase-activating prot 99.9 1E-22 2.3E-27 218.7 16.1 182 178-376 360-546 (604)
54 KOG1452 Predicted Rho GTPase-a 99.7 4.7E-18 1E-22 175.4 11.6 164 163-327 182-353 (442)
55 KOG4271 Rho-GTPase activating 99.7 5.3E-18 1.2E-22 194.1 8.5 161 162-323 914-1076(1100)
56 cd01233 Unc104 Unc-104 pleckst 99.7 4.1E-16 8.9E-21 140.8 11.8 92 19-124 2-98 (100)
57 cd01251 PH_centaurin_alpha Cen 99.7 5.5E-16 1.2E-20 140.8 11.3 91 21-125 1-101 (103)
58 cd04405 RhoGAP_BRCC3-like RhoG 99.6 7.6E-16 1.6E-20 156.0 12.1 185 164-376 20-232 (235)
59 cd01264 PH_melted Melted pleck 99.6 1.3E-15 2.7E-20 137.3 9.9 91 21-124 2-101 (101)
60 cd01260 PH_CNK Connector enhan 99.6 5.9E-15 1.3E-19 131.8 11.0 92 21-123 2-96 (96)
61 cd01265 PH_PARIS-1 PARIS-1 ple 99.6 7.5E-15 1.6E-19 131.4 11.0 88 22-123 2-93 (95)
62 cd01238 PH_Tec Tec pleckstrin 99.6 6.4E-15 1.4E-19 134.5 10.0 94 20-123 1-106 (106)
63 cd01235 PH_SETbf Set binding f 99.6 2.2E-14 4.7E-19 128.9 10.6 89 22-124 2-101 (101)
64 cd04401 RhoGAP_fMSB1 RhoGAP_fM 99.6 2.2E-14 4.7E-19 144.0 11.5 145 181-327 7-166 (198)
65 cd01247 PH_GPBP Goodpasture an 99.5 2.4E-14 5.2E-19 127.2 10.3 89 22-122 2-90 (91)
66 cd01252 PH_cytohesin Cytohesin 99.5 3.6E-14 7.7E-19 133.2 12.0 99 20-129 1-118 (125)
67 cd01236 PH_outspread Outspread 99.5 4.5E-14 9.8E-19 128.2 9.4 89 21-121 1-101 (104)
68 cd01241 PH_Akt Akt pleckstrin 99.5 9E-14 1.9E-18 126.1 10.9 97 19-123 1-101 (102)
69 cd01257 PH_IRS Insulin recepto 99.5 1.5E-13 3.3E-18 124.2 10.3 91 19-122 2-100 (101)
70 cd01266 PH_Gab Gab (Grb2-assoc 99.5 3.1E-13 6.7E-18 123.7 10.3 88 22-123 2-107 (108)
71 cd01246 PH_oxysterol_bp Oxyste 99.4 7.5E-13 1.6E-17 115.9 9.8 91 21-123 1-91 (91)
72 cd01250 PH_centaurin Centaurin 99.4 9.9E-13 2.2E-17 115.8 9.6 91 21-122 1-93 (94)
73 cd01244 PH_RasGAP_CG9209 RAS_G 99.4 2.6E-12 5.7E-17 115.6 9.8 76 34-123 18-98 (98)
74 cd01245 PH_RasGAP_CG5898 RAS G 99.4 1.9E-12 4E-17 116.3 8.8 88 22-122 2-97 (98)
75 cd01263 PH_anillin Anillin Ple 99.4 3.2E-12 7E-17 119.1 10.0 98 20-123 2-122 (122)
76 PF00169 PH: PH domain; Inter 99.3 2.4E-11 5.3E-16 107.1 12.4 101 19-124 1-103 (104)
77 cd01230 PH_EFA6 EFA6 Pleckstri 99.3 1.7E-11 3.7E-16 113.7 11.5 101 21-125 2-112 (117)
78 cd01253 PH_beta_spectrin Beta- 99.3 1.6E-11 3.4E-16 111.3 9.7 94 22-122 2-103 (104)
79 KOG4370 Ral-GTPase effector RL 99.2 1.8E-11 3.9E-16 131.3 8.0 170 179-381 70-280 (514)
80 KOG0930 Guanine nucleotide exc 99.2 5.5E-11 1.2E-15 121.8 9.3 101 19-129 260-380 (395)
81 cd01237 Unc112 Unc-112 pleckst 99.2 1.1E-10 2.4E-15 105.5 10.0 91 29-124 12-103 (106)
82 PF15413 PH_11: Pleckstrin hom 99.2 9.6E-11 2.1E-15 108.1 9.3 97 21-123 1-112 (112)
83 cd01219 PH_FGD FGD (faciogenit 99.1 5.8E-10 1.3E-14 101.0 11.4 98 19-125 2-100 (101)
84 cd01254 PH_PLD Phospholipase D 99.1 7.3E-10 1.6E-14 103.6 10.3 76 36-123 32-121 (121)
85 KOG3565 Cdc42-interacting prot 99.1 2.2E-10 4.7E-15 133.0 7.9 146 179-326 217-366 (640)
86 PF15410 PH_9: Pleckstrin homo 99.0 1.5E-09 3.2E-14 101.3 11.2 103 20-124 1-118 (119)
87 PF15409 PH_8: Pleckstrin homo 99.0 1.5E-09 3.3E-14 95.5 10.3 86 23-123 1-88 (89)
88 smart00233 PH Pleckstrin homol 99.0 4.8E-09 1E-13 90.8 12.0 97 19-124 1-101 (102)
89 KOG0690 Serine/threonine prote 98.8 5.2E-09 1.1E-13 110.4 6.4 108 14-127 10-119 (516)
90 cd01256 PH_dynamin Dynamin ple 98.8 4.1E-08 8.9E-13 86.7 9.2 99 19-123 1-104 (110)
91 cd01249 PH_oligophrenin Oligop 98.7 7E-08 1.5E-12 87.1 10.3 97 21-121 1-102 (104)
92 cd01234 PH_CADPS CADPS (Ca2+-d 98.7 1E-08 2.2E-13 91.2 4.6 98 20-127 3-113 (117)
93 cd00821 PH Pleckstrin homology 98.7 4.4E-08 9.6E-13 83.9 8.5 93 21-122 1-95 (96)
94 cd00900 PH-like Pleckstrin hom 98.7 1.6E-07 3.4E-12 81.0 10.9 96 22-123 2-99 (99)
95 KOG4724 Predicted Rho GTPase-a 98.6 6.1E-08 1.3E-12 109.6 5.3 168 159-326 410-589 (741)
96 cd01220 PH_CDEP Chondrocyte-de 98.5 1.1E-06 2.5E-11 79.3 11.2 97 19-125 2-98 (99)
97 cd01259 PH_Apbb1ip Apbb1ip (Am 98.5 4.3E-07 9.3E-12 82.5 7.7 95 21-124 2-108 (114)
98 KOG1090 Predicted dual-specifi 98.5 6E-08 1.3E-12 112.7 2.7 95 16-124 1631-1731(1732)
99 cd01243 PH_MRCK MRCK (myotonic 98.5 2.1E-06 4.6E-11 79.1 11.8 104 20-123 3-118 (122)
100 cd01242 PH_ROK Rok (Rho- assoc 98.3 9.3E-06 2E-10 73.8 11.7 103 21-125 2-111 (112)
101 KOG3640 Actin binding protein 98.2 1.3E-06 2.9E-11 102.1 6.4 103 17-125 988-1107(1116)
102 PF08101 DUF1708: Domain of un 98.2 8.6E-06 1.9E-10 90.9 11.9 147 180-328 8-169 (420)
103 PF14593 PH_3: PH domain; PDB: 98.1 1.7E-05 3.7E-10 72.2 9.4 91 16-126 10-101 (104)
104 KOG2059 Ras GTPase-activating 98.0 1.4E-05 3.1E-10 91.6 9.1 114 16-144 562-683 (800)
105 KOG3751 Growth factor receptor 97.9 2.6E-05 5.7E-10 86.8 7.2 104 16-125 314-425 (622)
106 KOG0932 Guanine nucleotide exc 97.8 7.1E-06 1.5E-10 91.6 2.2 112 12-131 499-626 (774)
107 cd01218 PH_phafin2 Phafin2 Pl 97.7 0.00023 5E-09 65.0 10.3 98 18-126 3-100 (104)
108 cd01261 PH_SOS Son of Sevenles 97.7 0.00034 7.3E-09 64.7 10.6 103 17-126 2-111 (112)
109 cd01258 PH_syntrophin Syntroph 97.7 0.00014 3E-09 66.6 7.3 89 33-122 15-107 (108)
110 PLN00188 enhanced disease resi 97.6 0.00022 4.8E-09 83.3 10.4 104 17-127 2-112 (719)
111 cd01239 PH_PKD Protein kinase 97.5 0.00032 6.9E-09 64.4 7.6 90 20-123 1-117 (117)
112 PTZ00267 NIMA-related protein 97.4 0.00028 6E-09 80.8 8.0 102 15-125 373-477 (478)
113 KOG0521 Putative GTPase activa 97.4 7.4E-05 1.6E-09 89.6 2.9 98 18-127 273-371 (785)
114 KOG3723 PH domain protein Melt 96.8 0.00065 1.4E-08 76.4 2.4 95 20-127 736-839 (851)
115 KOG3543 Ca2+-dependent activat 96.8 0.00029 6.2E-09 79.6 -0.6 106 17-127 462-568 (1218)
116 KOG0248 Cytoplasmic protein Ma 96.7 0.00093 2E-08 76.6 3.1 95 17-125 247-342 (936)
117 cd01262 PH_PDK1 3-Phosphoinosi 96.7 0.0082 1.8E-07 53.0 8.3 86 19-123 1-87 (89)
118 cd01222 PH_clg Clg (common-sit 96.5 0.029 6.3E-07 50.6 10.8 93 18-124 3-95 (97)
119 KOG3531 Rho guanine nucleotide 96.5 0.0011 2.4E-08 77.5 1.8 93 22-124 927-1019(1036)
120 PF15408 PH_7: Pleckstrin homo 96.5 0.0011 2.4E-08 57.4 1.3 88 22-123 1-96 (104)
121 PF12814 Mcp5_PH: Meiotic cell 96.5 0.043 9.2E-07 51.6 11.9 99 24-125 14-122 (123)
122 cd01240 PH_beta-ARK Beta adren 96.2 0.006 1.3E-07 55.5 4.5 94 18-125 2-99 (116)
123 KOG1453 Chimaerin and related 96.2 0.0025 5.4E-08 78.5 2.4 161 165-326 462-668 (918)
124 PLN02866 phospholipase D 96.1 0.035 7.6E-07 67.9 11.8 88 35-128 216-311 (1068)
125 PTZ00283 serine/threonine prot 96.1 0.017 3.7E-07 66.7 8.8 37 87-125 454-490 (496)
126 KOG1739 Serine/threonine prote 95.8 0.01 2.2E-07 66.1 4.6 94 19-125 24-117 (611)
127 cd01224 PH_Collybistin Collybi 95.2 0.29 6.2E-06 45.1 11.1 100 19-122 2-105 (109)
128 KOG4424 Predicted Rho/Rac guan 95.0 0.03 6.4E-07 64.0 5.0 105 13-126 266-371 (623)
129 cd01221 PH_ephexin Ephexin Ple 94.9 0.3 6.5E-06 46.1 10.8 80 36-121 26-119 (125)
130 cd01232 PH_TRIO Trio pleckstri 94.7 0.77 1.7E-05 42.8 12.9 88 37-125 24-113 (114)
131 cd01228 PH_BCR-related BCR (br 94.6 0.14 3E-06 45.8 7.3 88 19-123 3-93 (96)
132 PF15406 PH_6: Pleckstrin homo 94.3 0.093 2E-06 47.9 5.7 69 40-121 42-110 (112)
133 KOG1449 Predicted Rho GTPase-a 94.2 0.01 2.2E-07 67.5 -0.9 174 164-376 208-390 (670)
134 KOG0804 Cytoplasmic Zn-finger 93.6 0.52 1.1E-05 52.7 10.8 111 585-702 347-457 (493)
135 KOG1449 Predicted Rho GTPase-a 93.5 0.017 3.8E-07 65.6 -0.6 74 294-376 1-74 (670)
136 PF15404 PH_4: Pleckstrin homo 93.3 0.37 8.1E-06 48.5 8.5 34 21-56 1-34 (185)
137 COG1579 Zn-ribbon protein, pos 92.5 3.5 7.7E-05 43.2 14.5 70 582-651 10-82 (239)
138 cd01227 PH_Dbs Dbs (DBL's big 92.0 1.7 3.6E-05 41.7 10.5 87 38-125 30-116 (133)
139 cd01225 PH_Cool_Pix Cool (clon 91.9 0.91 2E-05 41.9 8.3 82 37-124 28-109 (111)
140 cd01226 PH_exo84 Exocyst compl 91.9 1.3 2.8E-05 40.3 9.1 79 38-124 20-98 (100)
141 KOG3549 Syntrophins (type gamm 91.8 0.29 6.2E-06 52.9 5.7 102 14-125 276-387 (505)
142 PF10186 Atg14: UV radiation r 90.8 2.4 5.2E-05 45.1 11.8 125 579-704 24-157 (302)
143 PF12240 Angiomotin_C: Angiomo 90.7 1.6 3.6E-05 44.2 9.5 72 606-690 13-88 (205)
144 KOG1737 Oxysterol-binding prot 90.6 0.17 3.6E-06 60.8 2.9 90 20-123 78-167 (799)
145 PF09726 Macoilin: Transmembra 90.4 50 0.0011 40.1 28.2 31 666-696 545-575 (697)
146 cd01223 PH_Vav Vav pleckstrin 90.2 1.9 4.1E-05 40.2 8.7 86 37-125 20-112 (116)
147 cd01231 PH_Lnk LNK-family Plec 90.0 1.3 2.9E-05 40.0 7.3 83 34-122 18-106 (107)
148 PF15405 PH_5: Pleckstrin homo 89.7 0.82 1.8E-05 43.8 6.2 35 89-123 100-134 (135)
149 KOG1117 Rho- and Arf-GTPase ac 88.9 0.18 4E-06 59.9 1.4 93 17-125 85-178 (1186)
150 KOG2391 Vacuolar sorting prote 88.6 5.5 0.00012 43.4 11.9 99 587-687 212-324 (365)
151 KOG0995 Centromere-associated 88.2 7.8 0.00017 45.0 13.5 103 580-699 219-327 (581)
152 KOG1738 Membrane-associated gu 86.5 0.1 2.2E-06 60.4 -2.5 55 19-77 562-617 (638)
153 cd00089 HR1 Protein kinase C-r 86.0 2 4.4E-05 36.4 5.8 67 622-700 3-69 (72)
154 PF00038 Filament: Intermediat 84.2 7.1 0.00015 42.2 10.5 65 585-649 50-124 (312)
155 KOG3551 Syntrophins (type beta 83.3 0.87 1.9E-05 50.1 2.8 104 18-125 291-402 (506)
156 PF15411 PH_10: Pleckstrin hom 82.3 13 0.00029 34.7 10.0 86 35-120 19-116 (116)
157 PRK10884 SH3 domain-containing 80.5 20 0.00044 36.9 11.5 70 608-701 105-174 (206)
158 PF00038 Filament: Intermediat 79.6 63 0.0014 34.8 15.7 113 581-693 74-193 (312)
159 KOG4047 Docking protein 1 (p62 78.5 1.1 2.3E-05 50.7 1.6 103 17-124 6-117 (429)
160 KOG0517 Beta-spectrin [Cytoske 77.9 0.048 1E-06 68.9 -9.8 102 18-125 2298-2410(2473)
161 KOG3727 Mitogen inducible gene 77.3 0.3 6.6E-06 55.8 -3.1 87 34-124 372-458 (664)
162 KOG0248 Cytoplasmic protein Ma 76.8 1.1 2.4E-05 52.4 1.2 89 20-124 260-348 (936)
163 PF15619 Lebercilin: Ciliary p 75.6 20 0.00044 36.5 9.8 35 584-618 14-48 (194)
164 KOG4807 F-actin binding protei 74.6 0.046 9.9E-07 59.5 -9.9 112 583-697 419-536 (593)
165 PF09726 Macoilin: Transmembra 74.3 2.2E+02 0.0047 34.9 20.9 19 631-649 491-509 (697)
166 PF08317 Spc7: Spc7 kinetochor 74.2 55 0.0012 35.9 13.5 97 602-698 127-241 (325)
167 PF09755 DUF2046: Uncharacteri 73.7 97 0.0021 33.9 14.6 35 623-657 169-207 (310)
168 PRK11637 AmiB activator; Provi 73.7 23 0.0005 40.3 10.8 36 670-705 100-135 (428)
169 PF14197 Cep57_CLD_2: Centroso 73.0 16 0.00036 30.9 7.0 55 585-639 1-65 (69)
170 PF07106 TBPIP: Tat binding pr 72.5 16 0.00036 36.0 8.1 65 622-694 73-137 (169)
171 KOG0996 Structural maintenance 71.6 1.6E+02 0.0034 37.7 17.2 76 613-696 812-894 (1293)
172 KOG1264 Phospholipase C [Lipid 71.6 4.2 9E-05 48.8 4.1 41 87-127 873-913 (1267)
173 PF00769 ERM: Ezrin/radixin/mo 71.1 1.1E+02 0.0025 32.2 14.4 112 586-701 2-117 (246)
174 TIGR03185 DNA_S_dndD DNA sulfu 71.1 53 0.0012 39.5 13.5 101 584-698 184-287 (650)
175 PF10168 Nup88: Nuclear pore c 71.0 55 0.0012 40.0 13.5 109 583-701 552-667 (717)
176 COG1579 Zn-ribbon protein, pos 70.3 93 0.002 32.8 13.3 43 609-651 91-133 (239)
177 PF12240 Angiomotin_C: Angiomo 70.1 1.2E+02 0.0026 31.1 13.5 115 583-697 18-153 (205)
178 cd01248 PH_PLC Phospholipase C 70.1 36 0.00079 31.2 9.4 34 89-122 80-114 (115)
179 KOG0977 Nuclear envelope prote 70.1 59 0.0013 38.2 12.9 97 579-695 110-230 (546)
180 PF03148 Tektin: Tektin family 69.9 35 0.00076 38.4 10.9 105 587-698 231-349 (384)
181 KOG4674 Uncharacterized conser 69.1 22 0.00048 46.9 9.9 90 608-697 792-882 (1822)
182 PF10186 Atg14: UV radiation r 68.9 1.1E+02 0.0025 32.3 14.3 45 583-627 64-108 (302)
183 KOG0161 Myosin class II heavy 68.3 87 0.0019 42.2 15.2 79 618-696 1010-1092(1930)
184 TIGR01843 type_I_hlyD type I s 68.3 82 0.0018 35.1 13.6 23 673-695 210-232 (423)
185 KOG2129 Uncharacterized conser 67.9 22 0.00047 39.8 8.3 69 584-652 210-316 (552)
186 PRK11637 AmiB activator; Provi 67.8 1.4E+02 0.003 34.0 15.4 87 580-694 168-254 (428)
187 PF12761 End3: Actin cytoskele 67.8 75 0.0016 32.4 11.6 115 560-700 74-194 (195)
188 COG5185 HEC1 Protein involved 67.6 78 0.0017 36.3 12.6 40 662-701 326-365 (622)
189 PF05911 DUF869: Plant protein 66.9 40 0.00087 41.3 11.2 99 582-701 596-694 (769)
190 PF15175 SPATA24: Spermatogene 66.9 10 0.00022 36.7 4.9 85 629-716 39-130 (153)
191 cd01255 PH_TIAM TIAM Pleckstri 65.1 50 0.0011 32.0 9.1 104 19-125 28-155 (160)
192 KOG3523 Putative guanine nucle 64.3 10 0.00023 44.3 5.3 82 34-121 496-591 (695)
193 KOG4236 Serine/threonine prote 63.5 7.4 0.00016 45.0 3.9 97 14-125 408-524 (888)
194 PF08826 DMPK_coil: DMPK coile 63.2 38 0.00082 28.1 7.0 28 612-639 30-57 (61)
195 PHA02562 46 endonuclease subun 62.5 1.6E+02 0.0035 34.3 15.1 32 665-696 298-329 (562)
196 KOG4807 F-actin binding protei 62.5 1.9E+02 0.0041 32.5 14.1 82 35-125 33-115 (593)
197 PF07888 CALCOCO1: Calcium bin 62.3 38 0.00082 39.7 9.3 51 594-648 141-191 (546)
198 PF02185 HR1: Hr1 repeat; Int 62.2 23 0.00049 29.8 5.8 60 628-701 1-61 (70)
199 TIGR01000 bacteriocin_acc bact 61.8 1.4E+02 0.003 34.3 14.0 43 609-651 160-202 (457)
200 KOG1029 Endocytic adaptor prot 60.8 64 0.0014 39.1 10.8 8 612-619 329-336 (1118)
201 PF02403 Seryl_tRNA_N: Seryl-t 60.5 67 0.0015 29.1 9.0 72 621-699 29-100 (108)
202 PF08614 ATG16: Autophagy prot 59.8 1E+02 0.0022 31.2 11.1 98 586-700 85-185 (194)
203 PHA02562 46 endonuclease subun 59.2 1.1E+02 0.0025 35.6 13.1 34 675-708 257-290 (562)
204 PF05508 Ran-binding: RanGTP-b 59.1 63 0.0014 35.1 9.7 81 585-691 45-136 (302)
205 KOG0161 Myosin class II heavy 58.7 1.6E+02 0.0035 39.9 15.0 66 586-651 856-931 (1930)
206 PF12128 DUF3584: Protein of u 58.2 1E+02 0.0022 40.0 13.2 108 580-697 382-493 (1201)
207 PF07926 TPR_MLP1_2: TPR/MLP1/ 57.5 1.7E+02 0.0038 27.6 14.7 59 580-638 19-83 (132)
208 PF06637 PV-1: PV-1 protein (P 56.4 1.4E+02 0.003 33.5 11.8 60 580-639 302-374 (442)
209 TIGR02231 conserved hypothetic 56.3 30 0.00066 40.4 7.6 37 663-699 135-171 (525)
210 PRK00409 recombination and DNA 55.8 1.6E+02 0.0035 36.4 13.8 79 579-677 517-595 (782)
211 PLN02372 violaxanthin de-epoxi 55.7 36 0.00079 38.3 7.4 88 576-685 355-447 (455)
212 PF13851 GAS: Growth-arrest sp 55.5 1.6E+02 0.0035 30.1 11.7 103 583-696 28-130 (201)
213 PF06637 PV-1: PV-1 protein (P 55.5 2.3E+02 0.0051 31.8 13.3 104 586-712 282-390 (442)
214 PRK09039 hypothetical protein; 54.8 2.1E+02 0.0046 31.7 13.4 18 583-600 47-64 (343)
215 PF07798 DUF1640: Protein of u 54.5 2E+02 0.0043 28.6 12.1 35 608-642 67-101 (177)
216 PRK10884 SH3 domain-containing 52.9 1.6E+02 0.0034 30.4 11.2 15 673-687 153-167 (206)
217 KOG4424 Predicted Rho/Rac guan 52.9 17 0.00038 42.3 4.6 85 33-125 509-596 (623)
218 PF03962 Mnd1: Mnd1 family; I 52.7 78 0.0017 32.1 8.8 28 666-693 103-130 (188)
219 KOG4460 Nuclear pore complex, 52.5 1.8E+02 0.0039 34.1 12.3 122 581-712 573-701 (741)
220 KOG3520 Predicted guanine nucl 52.2 23 0.0005 44.7 5.8 45 85-129 682-726 (1167)
221 PF11083 Streptin-Immun: Lanti 51.3 69 0.0015 29.1 7.1 59 584-642 1-73 (99)
222 KOG0705 GTPase-activating prot 51.2 11 0.00024 43.8 2.7 35 89-125 446-480 (749)
223 PF11559 ADIP: Afadin- and alp 50.5 2.4E+02 0.0052 27.1 11.7 21 677-697 130-150 (151)
224 COG1196 Smc Chromosome segrega 50.4 2.6E+02 0.0057 36.2 15.1 8 101-108 110-117 (1163)
225 PF03938 OmpH: Outer membrane 49.8 1.8E+02 0.0039 27.9 10.7 74 607-702 36-109 (158)
226 PF02841 GBP_C: Guanylate-bind 49.5 2.6E+02 0.0057 30.1 12.9 35 608-642 223-257 (297)
227 KOG0996 Structural maintenance 48.5 2.4E+02 0.0052 36.1 13.3 71 583-654 364-438 (1293)
228 PF15188 CCDC-167: Coiled-coil 48.1 1.1E+02 0.0023 27.2 7.7 40 662-707 31-70 (85)
229 COG2433 Uncharacterized conser 47.8 1E+02 0.0023 36.4 9.7 102 582-683 429-541 (652)
230 PF09304 Cortex-I_coil: Cortex 47.7 1.4E+02 0.0029 27.7 8.5 16 584-599 4-19 (107)
231 KOG0977 Nuclear envelope prote 47.0 1.6E+02 0.0035 34.7 11.2 78 620-700 105-189 (546)
232 TIGR02168 SMC_prok_B chromosom 47.0 3.4E+02 0.0074 34.4 15.4 26 672-697 914-939 (1179)
233 PF13094 CENP-Q: CENP-Q, a CEN 46.9 2.5E+02 0.0054 27.3 11.2 73 578-650 16-92 (160)
234 COG2433 Uncharacterized conser 46.9 2.7E+02 0.0059 33.2 12.8 88 581-700 421-508 (652)
235 PRK02224 chromosome segregatio 46.7 2.1E+02 0.0045 35.7 13.1 48 664-711 410-460 (880)
236 PF06785 UPF0242: Uncharacteri 46.5 2.7E+02 0.0058 30.8 11.8 83 602-701 140-222 (401)
237 KOG0018 Structural maintenance 46.5 3.6E+02 0.0079 34.3 14.3 109 580-699 650-758 (1141)
238 PF08317 Spc7: Spc7 kinetochor 46.5 4.3E+02 0.0094 29.0 14.8 22 617-638 180-201 (325)
239 KOG1853 LIS1-interacting prote 46.1 3.8E+02 0.0083 28.5 12.5 110 581-697 51-181 (333)
240 KOG2077 JNK/SAPK-associated pr 46.1 49 0.0011 38.6 6.7 54 586-639 319-375 (832)
241 PF15397 DUF4618: Domain of un 46.0 1.7E+02 0.0037 31.3 10.3 29 673-701 200-228 (258)
242 PLN02678 seryl-tRNA synthetase 45.8 58 0.0013 37.5 7.4 74 621-701 33-106 (448)
243 TIGR03007 pepcterm_ChnLen poly 45.4 5.3E+02 0.012 29.7 15.5 34 668-701 312-345 (498)
244 PRK05431 seryl-tRNA synthetase 45.3 1.1E+02 0.0025 34.9 9.7 73 623-702 30-102 (425)
245 PF14992 TMCO5: TMCO5 family 45.2 1.3E+02 0.0027 32.6 9.2 33 662-694 112-144 (280)
246 PF08581 Tup_N: Tup N-terminal 45.2 1.1E+02 0.0023 26.8 7.3 53 587-639 23-75 (79)
247 PRK02224 chromosome segregatio 45.1 2.7E+02 0.0059 34.6 13.8 13 108-120 109-121 (880)
248 PF07106 TBPIP: Tat binding pr 45.0 78 0.0017 31.1 7.4 58 582-639 72-134 (169)
249 KOG0612 Rho-associated, coiled 44.7 1.7E+02 0.0036 37.5 11.3 71 620-705 748-818 (1317)
250 PRK12704 phosphodiesterase; Pr 44.7 4.2E+02 0.009 31.3 14.3 35 673-707 117-151 (520)
251 PF12325 TMF_TATA_bd: TATA ele 44.7 2.8E+02 0.006 26.2 11.0 47 583-637 38-84 (120)
252 KOG1060 Vesicle coat complex A 44.5 7.1E+02 0.015 30.9 18.0 134 164-301 321-479 (968)
253 PRK03918 chromosome segregatio 43.9 3.4E+02 0.0074 33.7 14.4 25 624-648 348-372 (880)
254 PF12128 DUF3584: Protein of u 43.9 3.6E+02 0.0079 35.1 14.9 42 558-601 582-623 (1201)
255 PRK03918 chromosome segregatio 43.4 4.1E+02 0.0089 32.9 15.0 9 313-321 16-24 (880)
256 KOG4593 Mitotic checkpoint pro 43.4 4.8E+02 0.01 31.6 14.3 114 582-696 248-393 (716)
257 PF06248 Zw10: Centromere/kine 43.3 3E+02 0.0065 32.8 13.2 102 579-697 11-113 (593)
258 smart00787 Spc7 Spc7 kinetocho 43.3 4.9E+02 0.011 28.6 14.0 103 581-697 171-288 (312)
259 PF04156 IncA: IncA protein; 42.7 3.5E+02 0.0076 26.8 15.3 42 581-622 80-121 (191)
260 KOG1937 Uncharacterized conser 42.5 3.5E+02 0.0077 31.1 12.4 127 572-699 283-422 (521)
261 KOG0976 Rho/Rac1-interacting s 42.0 2.7E+02 0.0059 34.2 11.9 55 586-644 327-381 (1265)
262 TIGR03185 DNA_S_dndD DNA sulfu 42.0 3.1E+02 0.0067 33.1 13.2 99 582-699 421-521 (650)
263 KOG1899 LAR transmembrane tyro 41.9 2.3E+02 0.005 33.8 11.2 89 574-686 100-194 (861)
264 KOG3915 Transcription regulato 41.7 1.2E+02 0.0026 34.7 8.6 64 587-652 501-566 (641)
265 KOG4270 GTPase-activator prote 41.6 21 0.00045 42.1 3.1 155 157-325 31-196 (577)
266 PF09486 HrpB7: Bacterial type 41.6 3.6E+02 0.0079 26.7 12.4 99 601-700 13-113 (158)
267 TIGR03319 YmdA_YtgF conserved 41.6 4.7E+02 0.01 30.8 14.1 21 617-637 58-78 (514)
268 cd07596 BAR_SNX The Bin/Amphip 41.5 2.1E+02 0.0046 28.5 10.1 39 663-701 142-180 (218)
269 PF07820 TraC: TraC-like prote 41.5 88 0.0019 28.1 6.2 30 623-652 4-39 (92)
270 PF08172 CASP_C: CASP C termin 41.3 1.5E+02 0.0032 31.5 9.1 27 625-651 3-29 (248)
271 PRK10929 putative mechanosensi 40.9 5.5E+02 0.012 33.2 15.3 111 580-694 171-286 (1109)
272 PRK11519 tyrosine kinase; Prov 40.8 3.7E+02 0.0081 32.9 13.7 80 604-692 250-330 (719)
273 PF09730 BicD: Microtubule-ass 40.8 2.8E+02 0.0061 33.9 12.3 26 669-694 93-118 (717)
274 KOG1656 Protein involved in gl 40.7 4E+02 0.0087 27.5 11.4 121 559-686 7-177 (221)
275 PF07798 DUF1640: Protein of u 40.6 1.8E+02 0.0039 29.0 9.3 76 606-690 76-155 (177)
276 TIGR01837 PHA_granule_1 poly(h 40.5 1.2E+02 0.0025 28.5 7.3 20 674-693 97-116 (118)
277 TIGR01010 BexC_CtrB_KpsE polys 40.3 2.7E+02 0.0059 30.7 11.6 21 619-639 168-188 (362)
278 TIGR01005 eps_transp_fam exopo 40.2 2.1E+02 0.0045 35.1 11.5 62 581-646 287-352 (754)
279 PLN02320 seryl-tRNA synthetase 40.0 1.5E+02 0.0033 34.7 9.6 37 666-702 130-166 (502)
280 PF09744 Jnk-SapK_ap_N: JNK_SA 39.9 1.3E+02 0.0028 29.8 7.8 66 625-696 54-119 (158)
281 PF14362 DUF4407: Domain of un 39.8 5.1E+02 0.011 27.8 15.4 84 609-697 130-213 (301)
282 PF06005 DUF904: Protein of un 39.8 98 0.0021 26.5 6.1 28 666-693 11-38 (72)
283 PRK13729 conjugal transfer pil 39.7 81 0.0018 36.4 7.2 62 572-637 56-120 (475)
284 PRK04863 mukB cell division pr 39.6 3.8E+02 0.0082 35.8 14.1 29 674-702 450-478 (1486)
285 PF10805 DUF2730: Protein of u 39.6 2.9E+02 0.0063 25.3 9.7 74 606-697 21-96 (106)
286 PF10146 zf-C4H2: Zinc finger- 39.6 3.6E+02 0.0078 28.3 11.5 68 620-697 38-106 (230)
287 PF04111 APG6: Autophagy prote 39.4 3.6E+02 0.0078 29.6 12.1 26 613-638 70-95 (314)
288 TIGR01843 type_I_hlyD type I s 39.4 4.1E+02 0.0089 29.4 13.0 27 671-697 244-270 (423)
289 PF05557 MAD: Mitotic checkpoi 39.2 32 0.00069 42.0 4.3 79 620-698 453-535 (722)
290 PF10458 Val_tRNA-synt_C: Valy 39.1 1.1E+02 0.0025 25.3 6.3 64 626-692 2-65 (66)
291 PF07246 Phlebovirus_NSM: Phle 38.9 3.6E+02 0.0078 28.9 11.3 85 596-706 155-242 (264)
292 COG4026 Uncharacterized protei 38.8 4.6E+02 0.01 27.4 11.6 29 669-697 173-201 (290)
293 TIGR03752 conj_TIGR03752 integ 38.7 2.4E+02 0.0053 32.6 10.7 30 669-698 112-141 (472)
294 TIGR02169 SMC_prok_A chromosom 38.6 5.4E+02 0.012 32.8 15.3 14 183-196 118-131 (1164)
295 PF08232 Striatin: Striatin fa 38.5 96 0.0021 29.7 6.6 52 587-649 23-74 (134)
296 PF05667 DUF812: Protein of un 38.4 3.7E+02 0.0081 32.2 12.7 23 667-689 441-463 (594)
297 PF07888 CALCOCO1: Calcium bin 38.4 7.4E+02 0.016 29.4 14.8 39 581-619 142-180 (546)
298 KOG3156 Uncharacterized membra 38.3 2.3E+02 0.005 29.3 9.4 74 625-701 127-202 (220)
299 TIGR02169 SMC_prok_A chromosom 38.3 5.4E+02 0.012 32.7 15.3 19 201-219 109-127 (1164)
300 KOG2070 Guanine nucleotide exc 38.0 44 0.00096 38.4 4.7 58 598-655 597-657 (661)
301 KOG0837 Transcriptional activa 37.9 2.3E+02 0.005 30.2 9.6 60 614-704 213-272 (279)
302 KOG4673 Transcription factor T 37.8 3.9E+02 0.0084 32.4 12.2 113 554-702 654-768 (961)
303 PRK13182 racA polar chromosome 37.8 1.7E+02 0.0036 29.4 8.4 67 610-688 81-147 (175)
304 TIGR03007 pepcterm_ChnLen poly 37.5 3.3E+02 0.0071 31.4 12.1 85 604-698 140-229 (498)
305 PF08647 BRE1: BRE1 E3 ubiquit 37.2 2.8E+02 0.006 24.9 9.0 68 582-649 3-80 (96)
306 cd00890 Prefoldin Prefoldin is 37.1 3E+02 0.0065 25.2 9.7 39 613-651 5-43 (129)
307 PF03962 Mnd1: Mnd1 family; I 37.0 1.1E+02 0.0023 31.0 7.0 18 621-638 110-127 (188)
308 PRK11281 hypothetical protein; 37.0 4E+02 0.0086 34.5 13.3 41 599-639 212-252 (1113)
309 COG3937 Uncharacterized conser 36.9 1E+02 0.0022 28.4 6.0 22 675-696 85-106 (108)
310 PF03148 Tektin: Tektin family 36.8 3.2E+02 0.007 30.8 11.5 90 610-699 46-149 (384)
311 PF12709 Kinetocho_Slk19: Cent 36.8 91 0.002 27.8 5.5 34 610-643 45-78 (87)
312 PF09787 Golgin_A5: Golgin sub 36.5 5.5E+02 0.012 30.0 13.8 100 601-704 212-312 (511)
313 PRK04863 mukB cell division pr 36.1 2.8E+02 0.0061 36.9 12.2 76 623-698 515-590 (1486)
314 COG1196 Smc Chromosome segrega 36.0 6.1E+02 0.013 33.0 15.1 63 583-645 296-368 (1163)
315 PF14389 Lzipper-MIP1: Leucine 35.9 90 0.002 27.7 5.5 55 584-638 10-78 (88)
316 PF05483 SCP-1: Synaptonemal c 35.9 3.9E+02 0.0085 32.4 11.9 120 583-702 609-768 (786)
317 TIGR01005 eps_transp_fam exopo 35.8 8.6E+02 0.019 29.8 15.9 43 664-706 286-342 (754)
318 KOG4674 Uncharacterized conser 35.8 3.3E+02 0.0071 36.7 12.4 113 581-699 1256-1379(1822)
319 PF13514 AAA_27: AAA domain 35.7 7.1E+02 0.015 32.1 15.7 131 571-702 231-382 (1111)
320 PF07321 YscO: Type III secret 35.4 4.4E+02 0.0096 25.9 13.8 96 583-701 7-102 (152)
321 TIGR00414 serS seryl-tRNA synt 35.4 2.4E+02 0.0053 32.1 10.3 35 668-702 71-105 (418)
322 PF10211 Ax_dynein_light: Axon 35.3 4.9E+02 0.011 26.3 13.4 67 615-697 121-187 (189)
323 PF08687 ASD2: Apx/Shroom doma 35.1 4.3E+02 0.0092 28.4 11.3 97 594-693 108-261 (264)
324 KOG0993 Rab5 GTPase effector R 35.1 2.1E+02 0.0045 32.4 9.1 86 612-712 105-197 (542)
325 KOG0993 Rab5 GTPase effector R 34.9 3.2E+02 0.0069 31.0 10.5 53 626-695 439-491 (542)
326 PF05565 Sipho_Gp157: Siphovir 34.8 2.6E+02 0.0056 27.6 9.1 66 578-643 22-90 (162)
327 PF06698 DUF1192: Protein of u 34.7 1.2E+02 0.0025 25.2 5.5 33 618-650 25-57 (59)
328 PF11932 DUF3450: Protein of u 34.7 1.7E+02 0.0037 30.7 8.4 94 584-681 44-139 (251)
329 TIGR00606 rad50 rad50. This fa 34.6 6.5E+02 0.014 33.1 15.3 39 663-701 967-1005(1311)
330 TIGR00606 rad50 rad50. This fa 34.5 5.2E+02 0.011 34.0 14.4 120 570-696 780-918 (1311)
331 PRK14127 cell division protein 34.5 65 0.0014 29.9 4.5 32 669-700 40-71 (109)
332 PF05700 BCAS2: Breast carcino 34.5 5.4E+02 0.012 26.6 16.0 36 664-699 180-215 (221)
333 PF10267 Tmemb_cc2: Predicted 34.5 7.4E+02 0.016 28.2 16.5 66 623-701 239-304 (395)
334 KOG2685 Cystoskeletal protein 34.4 6.7E+02 0.015 28.6 13.0 109 581-697 252-375 (421)
335 KOG2072 Translation initiation 33.8 5.9E+02 0.013 31.6 13.1 61 623-702 672-732 (988)
336 PF06705 SF-assemblin: SF-asse 33.7 5.7E+02 0.012 26.7 12.2 43 603-645 45-87 (247)
337 PRK11239 hypothetical protein; 33.5 65 0.0014 33.3 4.7 28 669-696 186-213 (215)
338 PF07926 TPR_MLP1_2: TPR/MLP1/ 33.3 3.4E+02 0.0073 25.7 9.4 67 583-649 60-126 (132)
339 PF08458 PH_2: Plant pleckstri 33.2 3.1E+02 0.0067 25.6 8.6 38 87-127 69-106 (110)
340 KOG0933 Structural maintenance 33.1 5.5E+02 0.012 32.6 13.0 31 667-697 844-874 (1174)
341 PF14282 FlxA: FlxA-like prote 32.9 2.8E+02 0.006 25.4 8.4 62 625-706 23-84 (106)
342 PTZ00186 heat shock 70 kDa pre 32.6 2E+02 0.0043 34.9 9.4 39 680-718 607-646 (657)
343 cd00632 Prefoldin_beta Prefold 32.0 3.6E+02 0.0078 24.3 9.0 78 623-700 15-97 (105)
344 KOG1760 Molecular chaperone Pr 31.9 3E+02 0.0065 26.1 8.3 80 617-699 26-121 (131)
345 KOG1029 Endocytic adaptor prot 31.8 7.6E+02 0.016 30.5 13.4 20 598-617 363-382 (1118)
346 COG0419 SbcC ATPase involved i 31.6 3.7E+02 0.0081 33.8 12.0 49 664-712 408-464 (908)
347 PF12761 End3: Actin cytoskele 31.6 1.8E+02 0.004 29.7 7.5 27 674-700 161-187 (195)
348 PF01920 Prefoldin_2: Prefoldi 31.5 3.5E+02 0.0076 23.8 8.9 88 617-704 8-100 (106)
349 COG1842 PspA Phage shock prote 31.3 6.3E+02 0.014 26.4 13.6 22 615-636 53-74 (225)
350 PRK11020 hypothetical protein; 31.2 1.8E+02 0.004 27.1 6.7 62 625-701 2-63 (118)
351 TIGR03752 conj_TIGR03752 integ 30.8 2.6E+02 0.0056 32.4 9.3 62 583-648 64-136 (472)
352 PF13514 AAA_27: AAA domain 30.7 6.8E+02 0.015 32.3 14.3 39 659-697 235-273 (1111)
353 TIGR03755 conj_TIGR03755 integ 30.7 92 0.002 35.4 5.8 65 629-694 308-377 (418)
354 PF07957 DUF3294: Protein of u 30.6 1.1E+02 0.0025 31.6 5.9 34 625-658 74-109 (216)
355 PRK12787 fliX flagellar assemb 30.5 2.3E+02 0.0051 27.4 7.6 26 662-687 111-137 (138)
356 KOG0250 DNA repair protein RAD 30.1 5.3E+02 0.011 32.9 12.4 58 582-642 661-724 (1074)
357 PRK10929 putative mechanosensi 30.1 2.7E+02 0.0058 35.9 10.2 23 665-687 172-194 (1109)
358 TIGR01069 mutS2 MutS2 family p 29.8 6.3E+02 0.014 31.4 13.2 57 579-639 512-568 (771)
359 PF05266 DUF724: Protein of un 29.7 6.1E+02 0.013 25.8 12.1 28 669-696 155-182 (190)
360 PF04714 BCL_N: BCL7, N-termin 29.6 30 0.00066 27.5 1.3 22 34-55 27-48 (52)
361 PF14817 HAUS5: HAUS augmin-li 29.4 1.4E+02 0.003 36.0 7.3 41 599-639 52-97 (632)
362 PRK09841 cryptic autophosphory 29.3 5.3E+02 0.011 31.6 12.5 77 608-693 254-331 (726)
363 COG3750 Uncharacterized protei 29.2 1.2E+02 0.0025 26.5 4.8 40 583-622 22-68 (85)
364 PF04880 NUDE_C: NUDE protein, 28.9 88 0.0019 31.2 4.7 28 670-697 21-48 (166)
365 PF11180 DUF2968: Protein of u 28.8 6.5E+02 0.014 25.8 10.8 76 578-653 101-186 (192)
366 PF10234 Cluap1: Clusterin-ass 28.7 2.2E+02 0.0049 30.5 8.0 74 624-697 127-207 (267)
367 PRK12704 phosphodiesterase; Pr 28.3 5.4E+02 0.012 30.3 11.8 21 617-637 64-84 (520)
368 PRK11239 hypothetical protein; 28.1 80 0.0017 32.6 4.3 29 673-701 183-211 (215)
369 PF07439 DUF1515: Protein of u 28.1 4E+02 0.0086 24.8 8.2 63 619-694 6-68 (112)
370 PF04880 NUDE_C: NUDE protein, 27.9 61 0.0013 32.3 3.4 23 592-614 3-25 (166)
371 PF12718 Tropomyosin_1: Tropom 27.7 5.7E+02 0.012 24.7 13.7 28 670-697 77-104 (143)
372 PRK11546 zraP zinc resistance 27.5 2E+02 0.0043 28.0 6.7 57 588-649 60-118 (143)
373 KOG4348 Adaptor protein CMS/SE 27.2 1.3E+02 0.0028 34.3 6.0 22 628-649 594-615 (627)
374 PF06705 SF-assemblin: SF-asse 27.2 7.4E+02 0.016 25.9 12.9 81 608-701 108-189 (247)
375 PF11285 DUF3086: Protein of u 26.9 84 0.0018 33.3 4.3 25 617-641 7-34 (283)
376 PF15030 DUF4527: Protein of u 26.7 1.5E+02 0.0032 31.3 6.0 50 582-635 16-65 (277)
377 PRK13848 conjugal transfer pro 26.7 2E+02 0.0044 25.9 5.9 28 625-652 7-40 (98)
378 TIGR02473 flagell_FliJ flagell 26.3 5.3E+02 0.011 23.9 10.1 37 664-700 66-102 (141)
379 PRK12705 hypothetical protein; 26.2 5.8E+02 0.013 30.1 11.4 24 617-640 59-82 (508)
380 KOG3156 Uncharacterized membra 26.2 1.3E+02 0.0028 31.1 5.4 60 579-639 124-192 (220)
381 KOG4403 Cell surface glycoprot 26.1 1E+03 0.023 27.3 12.9 108 580-699 250-366 (575)
382 KOG3433 Protein involved in me 25.9 7.2E+02 0.016 25.3 11.5 64 583-649 75-141 (203)
383 PF10073 DUF2312: Uncharacteri 25.8 2.2E+02 0.0047 24.7 5.9 36 583-618 12-54 (74)
384 PRK11281 hypothetical protein; 25.8 7.2E+02 0.016 32.2 12.9 35 579-614 57-91 (1113)
385 PRK10361 DNA recombination pro 25.6 1.1E+03 0.024 27.5 15.4 42 593-634 71-112 (475)
386 PF08112 ATP-synt_E_2: ATP syn 25.6 1.4E+02 0.0031 24.0 4.3 32 584-621 17-48 (56)
387 COG5509 Uncharacterized small 24.9 1.6E+02 0.0034 24.5 4.5 35 618-652 29-63 (65)
388 PRK15178 Vi polysaccharide exp 24.9 1.1E+03 0.024 27.2 13.3 72 581-652 222-310 (434)
389 KOG1118 Lysophosphatidic acid 24.8 9.7E+02 0.021 26.4 13.0 115 570-697 96-219 (366)
390 KOG4095 Uncharacterized conser 24.8 31 0.00067 33.5 0.7 25 34-58 28-52 (165)
391 PF05837 CENP-H: Centromere pr 24.7 4.3E+02 0.0094 24.1 8.2 70 583-652 4-82 (106)
392 KOG4643 Uncharacterized coiled 24.6 1.6E+03 0.034 28.8 15.3 121 577-697 59-201 (1195)
393 PF09727 CortBP2: Cortactin-bi 24.3 2.6E+02 0.0056 28.6 7.1 47 626-692 139-185 (192)
394 KOG0689 Guanine nucleotide exc 23.9 61 0.0013 37.3 2.9 39 86-124 321-360 (448)
395 COG4717 Uncharacterized conser 23.8 7.3E+02 0.016 31.1 11.7 45 584-630 184-228 (984)
396 PF02841 GBP_C: Guanylate-bind 23.4 5.5E+02 0.012 27.6 10.1 20 232-251 8-27 (297)
397 PF10828 DUF2570: Protein of u 23.3 3.9E+02 0.0085 24.5 7.7 34 584-617 27-60 (110)
398 COG0172 SerS Seryl-tRNA synthe 23.2 4.6E+02 0.0099 30.2 9.6 87 607-699 13-101 (429)
399 KOG4673 Transcription factor T 23.2 4.9E+02 0.011 31.6 9.9 88 593-683 541-654 (961)
400 KOG0250 DNA repair protein RAD 23.1 9.3E+02 0.02 30.9 12.7 28 610-637 361-388 (1074)
401 KOG4140 Nuclear protein Ataxin 23.1 4.1E+02 0.0089 30.9 9.0 30 624-653 291-320 (659)
402 KOG0976 Rho/Rac1-interacting s 23.1 1.2E+03 0.027 28.9 13.1 60 579-638 45-109 (1265)
403 PRK13729 conjugal transfer pil 22.8 2E+02 0.0042 33.4 6.6 22 673-694 104-125 (475)
404 PF05597 Phasin: Poly(hydroxya 22.7 5E+02 0.011 24.9 8.4 31 604-634 37-67 (132)
405 PF14662 CCDC155: Coiled-coil 22.7 8.4E+02 0.018 25.0 11.8 88 602-696 21-111 (193)
406 PF11853 DUF3373: Protein of u 22.6 1E+02 0.0023 35.7 4.5 29 669-697 27-55 (489)
407 PF10481 CENP-F_N: Cenp-F N-te 22.5 3.7E+02 0.008 29.0 8.0 85 611-696 26-111 (307)
408 PRK06231 F0F1 ATP synthase sub 22.3 3.6E+02 0.0077 27.7 7.9 25 618-642 145-169 (205)
409 PF06698 DUF1192: Protein of u 22.2 1.4E+02 0.0029 24.8 3.8 26 668-693 23-48 (59)
410 TIGR01069 mutS2 MutS2 family p 22.1 1.5E+03 0.033 28.1 14.5 17 109-125 39-55 (771)
411 PF12017 Tnp_P_element: Transp 22.1 2.5E+02 0.0054 29.6 6.8 39 613-651 17-55 (236)
412 PF04156 IncA: IncA protein; 22.0 7.8E+02 0.017 24.3 13.7 23 619-641 100-122 (191)
413 TIGR02338 gimC_beta prefoldin, 22.0 6.1E+02 0.013 23.1 9.3 41 661-701 62-102 (110)
414 PF05529 Bap31: B-cell recepto 21.8 6.4E+02 0.014 25.2 9.6 27 670-696 158-184 (192)
415 PF05529 Bap31: B-cell recepto 21.7 7.3E+02 0.016 24.8 10.0 31 664-694 159-189 (192)
416 KOG0612 Rho-associated, coiled 21.5 8.3E+02 0.018 31.7 11.9 75 617-701 504-581 (1317)
417 PRK13411 molecular chaperone D 21.5 6.3E+02 0.014 30.6 11.0 26 613-638 521-546 (653)
418 PF15030 DUF4527: Protein of u 21.5 6.4E+02 0.014 26.8 9.3 92 591-685 39-133 (277)
419 KOG0971 Microtubule-associated 21.5 8E+02 0.017 30.9 11.3 116 583-706 425-551 (1243)
420 KOG0249 LAR-interacting protei 21.4 1E+03 0.022 29.3 11.9 23 670-692 213-235 (916)
421 KOG0577 Serine/threonine prote 21.3 3.3E+02 0.0071 32.8 8.0 68 242-326 218-285 (948)
422 PF13870 DUF4201: Domain of un 21.2 8E+02 0.017 24.2 13.1 71 626-697 103-176 (177)
423 PF13166 AAA_13: AAA domain 21.1 1.5E+03 0.032 27.3 14.5 67 623-693 324-390 (712)
424 PF03471 CorC_HlyC: Transporte 20.9 98 0.0021 26.5 3.0 45 198-247 4-48 (81)
425 PTZ00464 SNF-7-like protein; P 20.8 9.4E+02 0.02 24.9 11.0 22 579-600 15-36 (211)
426 PF07544 Med9: RNA polymerase 20.8 4.6E+02 0.0099 22.9 7.2 57 625-695 25-81 (83)
427 PRK13694 hypothetical protein; 20.5 1.6E+02 0.0035 25.9 4.1 37 583-619 20-63 (83)
428 PF10768 FliX: Class II flagel 20.5 3.7E+02 0.0079 26.1 7.0 26 662-687 113-139 (139)
429 smart00338 BRLZ basic region l 20.4 2.2E+02 0.0047 23.4 4.9 30 670-699 30-59 (65)
430 PF15277 Sec3-PIP2_bind: Exocy 20.3 2.2E+02 0.0048 25.3 5.2 32 89-124 57-88 (91)
431 PF03915 AIP3: Actin interacti 20.2 9.1E+02 0.02 27.8 11.2 74 609-697 201-277 (424)
432 PF06005 DUF904: Protein of un 20.1 4.5E+02 0.0097 22.5 6.7 45 593-637 8-55 (72)
433 PF10234 Cluap1: Clusterin-ass 20.1 4.1E+02 0.0089 28.6 8.0 40 582-621 169-208 (267)
434 KOG0642 Cell-cycle nuclear pro 20.1 1.5E+02 0.0032 34.8 4.9 97 581-688 33-129 (577)
No 1
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.1e-46 Score=420.52 Aligned_cols=607 Identities=31% Similarity=0.359 Sum_probs=494.0
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCcc-hhhccCCccccCCCCccccCc-cccccCCCCCCCcccccchHHHh
Q 004901 97 GRDGRAFTLKAETSEDLYEWKTALELALAQAPSA-ALVMGHNGIFRNDTNDTIEGS-FHQWRDKRPVKSLVVGRPILLAL 174 (724)
Q Consensus 97 ~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~~-a~~~g~~~~f~~~~~~~~~~~-~~~~k~k~~~~~~vFG~pL~~ll 174 (724)
+.+++.+...+++.++..+|-.++..+...||++ +.+++|.|+|+.+...+..++ +-.+++..++.+.+||+|..-.+
T Consensus 286 ~~~a~~fsdKmeti~d~le~e~rye~~~~~Aperdalil~higfv~~~t~~tc~s~~~c~d~~~t~llss~~~rps~g~l 365 (1100)
T KOG4271|consen 286 ELDAKPFSDKMETIQDVLEEEARYEAALKQAPERDALILKHIGFVYHPTKETCPSCPACVDAKITPLLSSVLGRPSLGAL 365 (1100)
T ss_pred hhccccccchhHHHHHHHHhHHHHHHHHHhCcchhhhhhhcCceeeCCCCCCCCCccchhhhccchhhhhhhcCcchhhh
Confidence 4557888999999999999999999999999998 889999999999988877664 56677778889999999998888
Q ss_pred hhcCCCcHHHHHHHHHHHhcCCCcCC---eeecCC-CHHHHHHHHHHHh-cCCcCC--CCCCCcc--chhhhHH--HHHh
Q 004901 175 EDIDGGPSFLEKALRFLEKFGTKVEG---ILRQAA-DVEEVDRRVQEYE-QGKTEF--SADEDAH--VIGDCVK--HVLR 243 (724)
Q Consensus 175 ~~~~~VP~il~~~i~~L~~~Gl~~EG---IFR~sg-~~~~v~~L~~~ld-~g~~~~--~~~~d~h--~vA~lLK--~fLR 243 (724)
+..++-|.+..+.+.+|...|+..|| |-|.++ ++..|+.-...|+ .|...+ ....+|| .|...++ .-||
T Consensus 366 e~~d~sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr 445 (1100)
T KOG4271|consen 366 ENSDGSPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLR 445 (1100)
T ss_pred hhhcCCcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhh
Confidence 88899999999999999999999999 999999 7788887777776 465433 3335899 5788888 8899
Q ss_pred hCCCCCCChhhHHHHHHH--HhcCCHHHHHHHHHHHHHcc--CChhHHH----HHHHHHHHHHHhhcccccCCCCcc-ch
Q 004901 244 ELPSSPVPASCCTALLEA--YKIDRKEARISAMRSAILET--FPEPNRR----LLQRILRMMHTISSHAHENRMTPS-AV 314 (724)
Q Consensus 244 eLPePLlp~~l~~~ll~~--~~~~~~~~ri~~l~~lIl~~--LP~~n~~----lL~~Ll~~L~~V~~~s~~NkMt~~-NL 314 (724)
.++..+.|..+|..+..+ +...-.+.|+..++..|++. .|.+|+. ++.+|+..+..+..++..|.|++. ..
T Consensus 446 ~~~~~~~~~~~C~~ld~a~gY~~~~Ne~riss~~~aices~~~p~pnnk~~~d~~LRivm~m~~g~~~s~~ni~n~~~~s 525 (1100)
T KOG4271|consen 446 QQGQQIAPKLQCVFLDEASGYGRDINEKRISSVLKAICESRNSPEPNNKDLADLDLRIVMCMMCGDPFSADNILNPVLAS 525 (1100)
T ss_pred hcccccCCccccccccccccccccccHHHHHHHHHHHHhhcCCCccccchhHHHHHHHHHHHhcCCchhhhhhcChhhHH
Confidence 999999999999888877 66655678999999889888 8998888 888999999999999999999999 99
Q ss_pred hhhccc-cccC-CCCCCCCccccc-cCCCCCcHHH----HHHHHHHHH-HHHHHHHHHHHhcccccCCCccccCCCCCCC
Q 004901 315 AACMAP-LLLR-PLLAGECELEDD-FDMNGDNSAQ----LLAAANAAN-NAQAIIATLLEEYENIFDDESLHRCSISADS 386 (724)
Q Consensus 315 AivfgP-~Llr-~~~~~~~~~ed~-~~~~~~~s~q----~~a~~~~~~-~~~~iVe~LIen~~~IF~~~~~~~~s~s~~~ 386 (724)
+.|++| .|++ |-..+.|.++.. |+..++..++ ++.|...++ .++.+|-.+++.|..||.++.+..+..+..+
T Consensus 526 ~aCkS~~llL~~pI~~~krrie~~~f~v~~de~vh~~~~~~sA~~~An~~aQ~iI~~~l~D~~si~~~~gl~~~~~s~~s 605 (1100)
T KOG4271|consen 526 AACKSPHLLLRLPIGAGKRRIELSSFDVRKDELVHGYIVLYSAKRKANMEAQDIIPVALTDYASIFLDNGLSREQLSEGS 605 (1100)
T ss_pred HHhcChHHHHhcccccccceecccccccccchhHHHHHHHHHHHhhccchHhhhhhHHhhcchhhhcccchhhhhccccc
Confidence 999999 5777 556888988887 9999999999 888888777 5899999999999999999987777666655
Q ss_pred CCCCCCC--CCCCcccccccCCCCCCCCCCCCCCCCCCchhhccCCCCCcCCCCCCCCccccccCCCCCCCCCCCCCCCc
Q 004901 387 HVDNSGS--EDSSDEENLDMKNNGYHDAQNEVDPESDDDPERAHSGKLSESSGYAGSDLYDYKALGGDDSDVGSPRNNNA 464 (724)
Q Consensus 387 ~~~~s~~--e~ssd~~~~~~~d~s~~s~e~e~~~~~d~~~e~~~~~~~s~~~~~~~~d~~~~~~~~~~~s~~~~~~~~~~ 464 (724)
.+..+.. .++.+.+.+...-..-.+..+..+-..+.+..........+.+..+.+|++.|.+.+.++++.++++.-..
T Consensus 606 ~iats~pl~q~~~~~es~~~~~~D~~e~~im~e~s~~~dn~~~a~~~tee~~~~Sp~~s~~~~~~~~~d~d~ds~p~~Sp 685 (1100)
T KOG4271|consen 606 EIATSIPLSQPSHKLESFTPFFSDVVEKKIMIEGSHMSDNAAEACSTTEEVFNFSPRDSSPYCNSNLQDSDEDSPPSYSP 685 (1100)
T ss_pred ccccccccCCCchhccccccccccccchhhccccccCCccccccccCchhhcCCChhhcccccCCCccccCCCCCCCcCC
Confidence 5443331 33333333332222222222222222222223334466667778888999999999999999998876555
Q ss_pred ccccCCCCCCCCCCCCCCchhHHhhhhcccCCCCccccccccccCCCCCCcCccccccccCCCCCCCC-CCCCCCccccc
Q 004901 465 SAESSKLPIDPIQIGDPGDQVVEQQGKQKKGNENSITEMEVSSVLPAGESYHSMGEILSSVDPGHPLS-VSGLESSAEKP 543 (724)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 543 (724)
+.+...++..+...|...... .....+.....+.+++...|+....|+.+.+ +++....+.|+
T Consensus 686 ~~e~t~lsst~k~~S~~~~d~----------------g~~~~~i~~~~~n~~~~r~i~~Vs~pi~Pk~vs~dvt~~a~kp 749 (1100)
T KOG4271|consen 686 FREDTSLSSTSKDHSKLSMDL----------------GGNDVGISFTMNNFESKRNINKVSPPIKPKAVSPDVTFDATKP 749 (1100)
T ss_pred ccCcccccCCccccccccccc----------------cCCCCCcccccchhHhhhhcccCCCCCCCCcCCCCcccccccC
Confidence 566666655443333222111 1123355566677788888888888877776 45566778888
Q ss_pred -CCCCCCCCCCCCcccccccCcccCCCCcccCCCCchHHHHHHH-----hhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH
Q 004901 544 -VGKGTSSNFSAKRSAFWGRSNARKTSSVESIDSSGEEELAIQR-----LEITKNDLRHRIAKEARGNAILQASLERRKQ 617 (724)
Q Consensus 544 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 617 (724)
.+.+..+...++|...|||+.+.|++.+|++|.+++|.+.||| ++.+|.|+|+||+||+|+|+.+||++|+|++
T Consensus 750 ~~sls~asi~~~~Rks~~~~~~g~~~l~~es~~~s~eD~~~~~r~e~~ni~~~k~dsq~Ri~k~~k~~~~~QaSder~nk 829 (1100)
T KOG4271|consen 750 DLSLSDASIRDGQRKSVSGRTWGPKDLFDESDYASPEDAVVKPRNEEENIYSVKDDSQQRIIKEIKNNNKLQASDERRNK 829 (1100)
T ss_pred cccccccccccCccccccCCCCCcccCCchhcccCcchhhhcccccccceeecchhhhhHHHHHhhcchhhhhhhhhccc
Confidence 4456667778899999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh--hCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 618 ALHERRLALE-QDVSRLQEQLQAERDLRAALEVG--LSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 618 ~~~~~r~~Le-~~V~~L~~~L~~e~~~~~~le~~--l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
+++++|.+|| +++.+||.++|.++..|.+...+ +....|.. ...-.|.++++-|++++..|.+ ++|++++.+...
T Consensus 830 s~~~~rts~E~~ekgr~rs~~qapr~~rka~~k~~~lt~~~~~~-d~~~~~sktskkl~k~k~a~hD-a~lktk~~n~pa 907 (1100)
T KOG4271|consen 830 SDSERRTSLEFLEKGRLRSIVQAPRLYRKACLKGGLLTNSAGGS-DLSAGPSKTSKKLEKNKLAKHD-AKLKTKTKNTPA 907 (1100)
T ss_pred ccccccccccHhhhhhhhhccccchhHHHHHHhccCcccccccc-ccccCcccchHHHhhhcccccc-ccccccccCCcc
Confidence 9999999999 99999999999999999999987 55554433 3466899999999999999999 999999999999
Q ss_pred HHH--HHHhhhcCCCcccccccccccccC
Q 004901 695 QLN--QQRQHHYGSLSDACDRYQNVQNHN 721 (724)
Q Consensus 695 ~l~--~~~~~~~~s~~~~~~~~~~~~~~~ 721 (724)
+.+ ++++.+..++.+.....+++++|.
T Consensus 908 ~~stt~~s~~~~~~l~~~~t~~k~ip~~~ 936 (1100)
T KOG4271|consen 908 RRSTTWESNYFLTPLQDAVTSEKPIPIFL 936 (1100)
T ss_pred cccchhhhhccCCcccccccCCcccchHH
Confidence 999 999999999999999988888873
No 2
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.6e-40 Score=331.16 Aligned_cols=192 Identities=23% Similarity=0.423 Sum_probs=175.5
Q ss_pred ccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccchhhhHHHHHhh
Q 004901 165 VVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRE 244 (724)
Q Consensus 165 vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~fLRe 244 (724)
+||+||..+++ +..||.+|.+|+.||+++|+.+|||||++|+...+++++..+|+|.......+|+|+||++||.|||+
T Consensus 1 ~FG~~L~~~~~-~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~~~~~~~~~~va~~lK~flre 79 (192)
T cd04402 1 LFGQPLSNICE-DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEVDLKAEPVLLLASVLKDFLRN 79 (192)
T ss_pred CCCCcHHHHhC-CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCCccCCHHHHHHHHHHHHHh
Confidence 69999999998 67899999999999999999999999999999999999999999976556789999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccC
Q 004901 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (724)
Q Consensus 245 LPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr 324 (724)
||+||+|.+.|+.|+.++...+...++..++.++ .+||..|+.+|+||+.||++|+.+++.|+||+.|||+||||+|||
T Consensus 80 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~ 158 (192)
T cd04402 80 IPGSLLSSDLYEEWMSALDQENEEEKIAELQRLL-DKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLW 158 (192)
T ss_pred CCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccC
Confidence 9999999999999999998888889999999966 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 325 ~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
++..+ .........+..+|++||+||+.||+++.
T Consensus 159 ~~~~~------------------~~~~~~~~~~~~~~~~LI~~~~~IF~~~~ 192 (192)
T cd04402 159 PPASS------------------ELQNEDLKKVTSLVQFLIENCQEIFGEDI 192 (192)
T ss_pred CCCcc------------------HHHHHHHHhhhHHHHHHHHhHHHhCCCCC
Confidence 88321 01133456678999999999999999863
No 3
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=100.00 E-value=9e-40 Score=328.85 Aligned_cols=189 Identities=20% Similarity=0.377 Sum_probs=168.0
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC-C-cCCC--CCCCccchhhhHHH
Q 004901 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDCVKH 240 (724)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~-~~~~--~~~d~h~vA~lLK~ 240 (724)
||+||..++++. ..||.+|.+|++||+++|+.+|||||++|+..+|+++++.|+++ . ..+. ...|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 999999999875 46999999999999999999999999999999999999999974 3 2332 23589999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccc
Q 004901 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (724)
Q Consensus 241 fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP 320 (724)
|||+||+||||.++|+.|+.+.+..+..+++..++.++ .+||+.|+.+|+||+.||++|+.+++.||||+.|||+||||
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLaivf~P 159 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAKISNPDERLEAVHEAL-MLLPPAHYETLRYLMEHLKRVTLHEKDNKMNAENLGIVFGP 159 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhc
Confidence 99999999999999999999998888889999999966 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004901 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (724)
Q Consensus 321 ~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF 372 (724)
+|||++... . ...+....+.+.+|++||+||+.||
T Consensus 160 ~Ll~~~~~~--------------~---~~~~~~~~~~~~iv~~LI~~~~~iF 194 (194)
T cd04372 160 TLMRPPEDS--------------A---LTTLNDMRYQILIVQLLITNEDVLF 194 (194)
T ss_pred ccCCCCCcc--------------H---HHHHHhHHHHHHHHHHHHHhhHhhC
Confidence 999987321 0 1223344567899999999999998
No 4
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.3e-39 Score=329.81 Aligned_cols=197 Identities=22% Similarity=0.348 Sum_probs=174.3
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCC---CCCCCccchhhhH
Q 004901 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCV 238 (724)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~---~~~~d~h~vA~lL 238 (724)
+++||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+...++.++..+|.|.... ....|||+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 46999999999976 4579999999999999999999999999999999999999999996432 3456999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhc
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (724)
|.|||+||+||+|.++|+.|+.+.+..+...++..++.+| .+||+.|+.+|+||+.||++|+.|++.|+|++.|||+||
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~f 160 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAANKPDEDERLQAIWRIL-NKLPRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVL 160 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHh
Confidence 9999999999999999999999998888888999999965 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 004901 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (724)
Q Consensus 319 gP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~ 375 (724)
||+|+|++..+. . .+.+.....+.+.+|++||+||+.||+++
T Consensus 161 aP~ll~~~~~~~--------------~-~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 161 APNLLWAKNEGS--------------L-AEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred ccccCCCCCCCh--------------h-hhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 999999884211 0 11112334568899999999999999986
No 5
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=100.00 E-value=2.3e-39 Score=327.07 Aligned_cols=191 Identities=23% Similarity=0.420 Sum_probs=168.5
Q ss_pred cccccchHHHhhhc-----CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-CCCCCCCccchhhh
Q 004901 164 LVVGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDC 237 (724)
Q Consensus 164 ~vFG~pL~~ll~~~-----~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~l 237 (724)
.|||+||++++... ..||.+|.+|+.||+++|+.+|||||++|+...++++++.||+|.. .+....|||+||++
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~d~h~va~l 80 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFDSDTDVHTVASL 80 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCccccCCHHHHHHH
Confidence 38999999998642 3499999999999999999999999999999999999999999963 44567899999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhc--CCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchh
Q 004901 238 VKHVLRELPSSPVPASCCTALLEAYKI--DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (724)
Q Consensus 238 LK~fLReLPePLlp~~l~~~ll~~~~~--~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 315 (724)
||.|||+||+||+|.+.|+.|+.+... .+...++..++.+| .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 LK~fLReLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~l~~~l-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (199)
T cd04390 81 LKLYLRELPEPVIPWAQYEDFLSCAQLLSKDEEKGLGELMKQV-SILPKVNYNLLSYICRFLDEVQSNSSVNKMSVQNLA 159 (199)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhccCccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHH
Confidence 999999999999999999999988764 34567788888855 699999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004901 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (724)
Q Consensus 316 ivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF 372 (724)
+||||+|||++.. + ..+++..+.+++.+|++||+||+.||
T Consensus 160 ivf~P~llr~~~~------~-----------~~~~~~~~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 160 TVFGPNILRPKVE------D-----------PATIMEGTPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred HHhccccCCCCCC------C-----------HHHHHhccHHHHHHHHHHHHhhhhcC
Confidence 9999999998732 2 12334556778899999999999998
No 6
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=6.4e-39 Score=320.45 Aligned_cols=185 Identities=24% Similarity=0.345 Sum_probs=167.0
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-cCCCCCCCccchhhhHHHHHhh
Q 004901 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (724)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLRe 244 (724)
||+||+.++.+...||.+|.+|++||+++|+.+|||||++|+..+++.+++.|+.|. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~~~~~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~~~~~~d~h~va~lLK~flRe 80 (186)
T cd04407 1 FGVRVGSLTSNKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENVKLENYPIHAITGLLKQWLRE 80 (186)
T ss_pred CCCcHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCcccCcccCCHHHHHHHHHHHHHh
Confidence 999999999888899999999999999999999999999999999999999999885 3334568999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccC
Q 004901 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (724)
Q Consensus 245 LPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr 324 (724)
||+||||+++|+.|+.+....+..+++.+++.+| .+||+.|+.+|++|+.||++|+.+++.|||++.|||+||||+|||
T Consensus 81 LPepLi~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~ 159 (186)
T cd04407 81 LPEPLMTFAQYNDFLRAVELPEKQEQLQAIYRVL-EQLPTANHNTLERLIFHLVKVALEEDVNRMSPNALAIVFAPCLLR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccCCCChhHHHHhhhccccC
Confidence 9999999999999999998888888999999965 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 325 ~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
++... + .++.+....++..+|++||+.
T Consensus 160 ~~~~~-----d-----------~~~~~~~~~~~~~~v~~li~~ 186 (186)
T cd04407 160 CPDSS-----D-----------PLTSMKDVAKTTTCVEMLIKE 186 (186)
T ss_pred CCCCC-----C-----------HHHHHHhhhhhHHHHHHHhhC
Confidence 87321 1 133456677888999999973
No 7
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.9e-39 Score=328.06 Aligned_cols=200 Identities=25% Similarity=0.327 Sum_probs=175.2
Q ss_pred ccccchHHHhhhc------CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC---cCCCCCCCccchh
Q 004901 165 VVGRPILLALEDI------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIG 235 (724)
Q Consensus 165 vFG~pL~~ll~~~------~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~---~~~~~~~d~h~vA 235 (724)
|||+||..++.+. ..||.+|.+|++||+++|+.+|||||++|+..+++.++..++.+. .......|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 7999999999763 369999999999999999999999999999999999999999863 2234567999999
Q ss_pred hhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchh
Q 004901 236 DCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (724)
Q Consensus 236 ~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 315 (724)
++||.|||+||+||||.++|+.|+.+....+..+++.+++.++ .+||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA 159 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQGLPSKKDQLQALNLLV-LLLPEANRDTLKALLEFLQKVVDHEEKNKMNLWNVA 159 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHccccCCCChHHHH
Confidence 9999999999999999999999999988888888999999865 699999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 316 ivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
+||||+||++...+... .......+..+..++.+|++||+|++.||..+.
T Consensus 160 ivfaP~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~iv~~lI~~~~~if~~p~ 209 (216)
T cd04391 160 MIMAPNLFPPRGKHSKD-----------NESLQEEVNMAAGCANIMRLLIRYQDLLWTVPS 209 (216)
T ss_pred HHhccccCCCCCCCCCc-----------chhHHHHHHHHHHHHHHHHHHHHhHHHHhcCCH
Confidence 99999999987432211 122334456667788999999999999998764
No 8
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms]
Probab=100.00 E-value=2.2e-37 Score=336.47 Aligned_cols=303 Identities=23% Similarity=0.349 Sum_probs=237.0
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCC--CCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS--ALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~--~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fv 92 (724)
.....+++||||.+.|....++|.|+||+....+-.+---+-+ ...+.|...++.+..|.-....+ -+|+|||.
T Consensus 261 ~p~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRktdS----IdKRFCFD 336 (812)
T KOG1451|consen 261 RPTPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKTDS----IDKRFCFD 336 (812)
T ss_pred CCCCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcccc----cccceeee
Confidence 3445689999999999888889999999998753333222222 22233444445555555443222 47899999
Q ss_pred EEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCcchhhccCCccccCCCCccccCccccccCCCCCCCcccccchHH
Q 004901 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDTNDTIEGSFHQWRDKRPVKSLVVGRPILL 172 (724)
Q Consensus 93 it~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~~a~~~g~~~~f~~~~~~~~~~~~~~~k~k~~~~~~vFG~pL~~ 172 (724)
+....+. .+.++||-+++++..||.|+..+ .+++..+..-...+. ..|.
T Consensus 337 ve~~erp-gviTmQALSE~drrlWmeAMDG~-------------ep~Y~s~~~~~~~~~----------------~qLd- 385 (812)
T KOG1451|consen 337 VEVEERP-GVITMQALSEKDRRLWMEAMDGA-------------EPSYTSGENCSTYKQ----------------TQLD- 385 (812)
T ss_pred eeecccC-CeeehHhhhhhHHHHHHHHhcCC-------------CccccCccccchhhh----------------hhhh-
Confidence 9875544 48999999999999999998633 233333211000000 0111
Q ss_pred HhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHH-hc---CCc--CCCCCCCccchhhhHHHHHhhCC
Q 004901 173 ALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEY-EQ---GKT--EFSADEDAHVIGDCVKHVLRELP 246 (724)
Q Consensus 173 ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~l-d~---g~~--~~~~~~d~h~vA~lLK~fLReLP 246 (724)
+--=.||.+||.+|+..|++++|+||..|...+|++|...+ +- ++. .....+|+-+|.+.||.|||.||
T Consensus 386 -----~iGF~fvrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRnLp 460 (812)
T KOG1451|consen 386 -----DIGFEFVRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRNLP 460 (812)
T ss_pred -----hhhHHHHHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHhCC
Confidence 11135899999999999999999999999999999998764 32 222 22356899999999999999999
Q ss_pred CCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCC
Q 004901 247 SSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (724)
Q Consensus 247 ePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~ 326 (724)
+||+++.++..|+.++...+.+.|+.+|+.++ .+||..|+..|..|+.||..|+.|+..|.||+.||++||||+|||+.
T Consensus 461 EPLMTY~LHk~FI~AAKsdnq~yRv~aIHsLV-HkLPEKNReMLelLirHLvnVa~hSkeNLMTVSNLGViFGPTLlRpQ 539 (812)
T KOG1451|consen 461 EPLMTYELHKVFINAAKSDNQTYRVDAIHSLV-HKLPEKNREMLELLIRHLVNVADHSKENLMTVSNLGVIFGPTLLRPQ 539 (812)
T ss_pred chhhHHHHHHHHHHHHhccchhhhHHHHHHHH-HhccHhhHHHHHHHHHHHHHHHhhhhcccccccccceeecccccCch
Confidence 99999999999999999999999999999966 69999999999999999999999999999999999999999999987
Q ss_pred CCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 327 LAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 327 ~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
. ...||+|.++.++-||++||+||+.||...+
T Consensus 540 E------------------ETVAAiMdIKFQNIVVEILIEnyeKIF~t~P 571 (812)
T KOG1451|consen 540 E------------------ETVAAIMDIKFQNIVVEILIENYEKIFKTKP 571 (812)
T ss_pred H------------------HHHHHHHcchhhhhhHHHHHhhhHHHhcCCC
Confidence 2 2578889999888899999999999998765
No 9
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=8.7e-39 Score=327.31 Aligned_cols=209 Identities=22% Similarity=0.347 Sum_probs=173.7
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-cCCCCCCCccchhhhHHH
Q 004901 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKH 240 (724)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~ 240 (724)
++|||+||..++++ +..||.+|.+|+.||+.+|+.+|||||++|+..+++.|++.++.+. .......++|+||++||.
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lLK~ 81 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDNVNYDGQQAYDVADMLKQ 81 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCccCcccccHHHHHHHHHH
Confidence 46999999988886 4579999999999999999999999999999999999999999863 444556899999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccc
Q 004901 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (724)
Q Consensus 241 fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP 320 (724)
|||+||+||||.++|+.|+.+.+..+.++++.+++.++ ..||+.|+.+|++|+.||++|+.|++.|||++.|||+||||
T Consensus 82 flReLPePLlt~~l~~~fi~~~~~~~~~~~~~~l~~~i-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 160 (220)
T cd04375 82 YFRDLPEPLLTNKLSETFIAIFQYVPKEQRLEAVQCAI-LLLPDENREVLQTLLYFLSDVAANSQENQMTATNLAVCLAP 160 (220)
T ss_pred HHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhh
Confidence 99999999999999999999988888889999999966 59999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcccc---ccC--CCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 004901 321 LLLRPLLAGECELED---DFD--MNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (724)
Q Consensus 321 ~Llr~~~~~~~~~ed---~~~--~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~ 375 (724)
+||+........+.. .+. ..|... ...+.....+..+|.+||+||+.||.-.
T Consensus 161 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~e~~~~~~~v~~lI~~~~~lf~vp 217 (220)
T cd04375 161 SLFHLNTSRRENSSPARRMQRKKSLGKPD---QKELSENKAAHQCLAYMIEECNTLFMVP 217 (220)
T ss_pred hhcCCCCCCcccccchhhhccccccCCCc---HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999986432110000 000 001111 1123334456788999999999999753
No 10
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=100.00 E-value=5.5e-39 Score=320.02 Aligned_cols=176 Identities=21% Similarity=0.348 Sum_probs=164.7
Q ss_pred cccchHHHhhhc-----CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccchhhhHHH
Q 004901 166 VGRPILLALEDI-----DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (724)
Q Consensus 166 FG~pL~~ll~~~-----~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~ 240 (724)
||+||..++++. ..||.+|.+|+.||+++|+++|||||++|+...++++++.|++|......++|||+||++||.
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~~~~~~~d~h~va~lLK~ 80 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRESPNLEEYEPPTVASLLKQ 80 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCCCCccccChHHHHHHHHH
Confidence 999999999863 359999999999999999999999999999999999999999997665667899999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccc
Q 004901 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (724)
Q Consensus 241 fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP 320 (724)
|||+||+||||.++|+.|+++....+..+++..++.++ .+||+.|+.+|+||+.||++|+.|++.|+||+.|||+||||
T Consensus 81 fLReLP~pLi~~~~~~~~~~~~~~~~~~~r~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP 159 (182)
T cd04381 81 YLRELPEPLLTKELMPRFEEACGRPTEAEREQELQRLL-KELPECNRLLLAWLIVHMDHVIAQELETKMNIQNISIVLSP 159 (182)
T ss_pred HHHhCCCccCCHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhCcccCCCHHHHHHHhCc
Confidence 99999999999999999999998888889999999965 69999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 004901 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (724)
Q Consensus 321 ~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~ 374 (724)
+|+.+. .+++.||+||+.||++
T Consensus 160 ~l~~~~--------------------------------~~~~~li~~~~~if~~ 181 (182)
T cd04381 160 TVQISN--------------------------------RLLYALLTHCQELFGN 181 (182)
T ss_pred cccCcH--------------------------------HHHHHHHHHHHHHcCC
Confidence 998643 6799999999999986
No 11
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-38 Score=319.44 Aligned_cols=190 Identities=22% Similarity=0.298 Sum_probs=165.6
Q ss_pred cccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCC----CCCCccchhhhH
Q 004901 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFS----ADEDAHVIGDCV 238 (724)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~----~~~d~h~vA~lL 238 (724)
++||+||..++.+ +..||.+|.+|++||+++|+ +|||||++|+..++++++..||+|..... ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 4899999999876 46899999999999999999 69999999999999999999999863221 346999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhc
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (724)
|.|||+||+||||.++|+.|+++....+..+++..++.+| .+||+.|+.+|+||+.||++|+.+++.||||+.|||+||
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 158 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAVSAASDEERLEKIHDVI-QQLPPPHYRTLEFLMRHLSRLAKYCSITNMHAKNLAIVW 158 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHhhHhh
Confidence 9999999999999999999999999888899999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 319 gP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
||+|||++...... .+-.++.+....++.||+|||.|
T Consensus 159 ~P~L~~~~~~~~~~------------~~~~~~~~~~~~q~~v~~~~~~~ 195 (195)
T cd04384 159 APNLLRSKQIESAC------------FSGTAAFMEVRIQSVVVEFILNH 195 (195)
T ss_pred hhhcCCCCcccccc------------chHHHHHHHHhhhhhheehhhcC
Confidence 99999988421100 11123455566778899999986
No 12
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.8e-38 Score=323.76 Aligned_cols=192 Identities=18% Similarity=0.321 Sum_probs=167.4
Q ss_pred cccchHHHhhhcC------------CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcC--CCCCCCc
Q 004901 166 VGRPILLALEDID------------GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDA 231 (724)
Q Consensus 166 FG~pL~~ll~~~~------------~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~--~~~~~d~ 231 (724)
||+||..++++.+ .||.+|.+|+.||+++|+.+|||||++|+..+++.++..|++|... .....++
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 9999999998843 3999999999999999999999999999999999999999998532 3446799
Q ss_pred cchhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccc-----c
Q 004901 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----E 306 (724)
Q Consensus 232 h~vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~-----~ 306 (724)
|+||++||.|||+||+||||.++|+.|+.+....+.+.++..++.++ .+||+.|+.+|+||+.||++|+.++. .
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~~~~~~~~~~~l~~l~-~~LP~~n~~~L~~L~~~L~~V~~~s~i~~~~~ 159 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQKIEDEEERKRVLHLVY-CLLPKYHRDTMEVLFSFLKWVSSFSHIDEETG 159 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999999999999999999998888888888888754 69999999999999999999998764 5
Q ss_pred CCCCccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 307 NRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 307 NkMt~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
|||++.|||+||||+|||++..... .+........+|++||+||+.||....
T Consensus 160 NkM~~~NLAivf~P~Ll~~~~~~~~------------------~~~~~~~~~~vv~~LI~n~~~if~vp~ 211 (213)
T cd04397 160 SKMDIHNLATVITPNILYSKTDNPN------------------TGDEYFLAIEAVNYLIENNEEFCEVPD 211 (213)
T ss_pred CcCChHHhHHhhcccccCCCCCCcc------------------hHHHHHHHHHHHHHHHHhHHHHhcCCC
Confidence 9999999999999999998743210 112233466899999999999998753
No 13
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=100.00 E-value=2.9e-38 Score=316.30 Aligned_cols=184 Identities=20% Similarity=0.374 Sum_probs=165.1
Q ss_pred cccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcC---CCCCCCccchhhhHH
Q 004901 164 LVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVK 239 (724)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~---~~~~~d~h~vA~lLK 239 (724)
++||++|..+++. +..||.+|.+|++||+++|+.+|||||++|+..+++.+++.|++|... .....|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 4899999999986 457999999999999999999999999999999999999999998643 234679999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhcc
Q 004901 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (724)
Q Consensus 240 ~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfg 319 (724)
.|||+||+||||.++|+.|+.+....+..+++..++.+| .+||+.|+.+|+||+.||++|++|++.||||+.|||+|||
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~ 159 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCVKLENPTERVHQIREIL-STLPRSVIIVMRYLFAFLNHLSQFSDENMMDPYNLAICFG 159 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCCCcccceeeee
Confidence 999999999999999999999999888889999999966 6999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 320 PLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 320 P~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
|+|||.+... ..+....+++++++.||.|
T Consensus 160 P~L~~~p~~~-------------------~~~~~~~~~~~~~~~li~~ 188 (188)
T cd04383 160 PTLMPVPEGQ-------------------DQVSCQAHVNELIKTIIIH 188 (188)
T ss_pred ccccCCCCCc-------------------cHHHHHHHHHHHHHHHhcC
Confidence 9999987321 1134456788999999975
No 14
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-38 Score=316.83 Aligned_cols=190 Identities=25% Similarity=0.417 Sum_probs=168.4
Q ss_pred CCcccccchHHHhhhc---CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCC-CCccchhhh
Q 004901 162 KSLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDAHVIGDC 237 (724)
Q Consensus 162 ~~~vFG~pL~~ll~~~---~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~-~d~h~vA~l 237 (724)
++.+||+||+.++++. ..||.+|.+|++||+++|+++|||||++|+..+++.+++.+|+|....... .|+|+||++
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~va~~ 81 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPVDFDQYEDVHLPAVI 81 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCCcccccCHHHHHHH
Confidence 5689999999998764 579999999999999999999999999999999999999999996433333 499999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhh
Q 004901 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (724)
Q Consensus 238 LK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAiv 317 (724)
||.|||+||+||+|.++|+.|+.+.... ...++..++.++ .+||+.|+.+|.+|+.||++|+.|++.|+|++.|||+|
T Consensus 82 LK~~lr~Lp~pLi~~~~~~~l~~~~~~~-~~~~~~~~~~~i-~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~v 159 (195)
T cd04404 82 LKTFLRELPEPLLTFDLYDDIVGFLNVD-KEERVERVKQLL-QTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVV 159 (195)
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhhee
Confidence 9999999999999999999999987654 577889999866 58999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004901 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (724)
Q Consensus 318 fgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF 372 (724)
|||+|||++... . .+.....++.+|++||+||+.||
T Consensus 160 faP~l~~~~~~~-~------------------~l~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 160 FGPNLLWAKDAS-M------------------SLSAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred eeccccCCCCcc-c------------------CHHHHHHHHHHHHHHHHhHHhhC
Confidence 999999987321 0 12345667889999999999999
No 15
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=3.7e-38 Score=315.34 Aligned_cols=183 Identities=27% Similarity=0.410 Sum_probs=163.1
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcC-C--CCCCCccchhhhHHHH
Q 004901 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-F--SADEDAHVIGDCVKHV 241 (724)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~-~--~~~~d~h~vA~lLK~f 241 (724)
||+||..++++. ..||.+|.+|+.||+.+|+++|||||++|+...+++++..+|.|... + ....|+|+||++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 999999999874 56999999999999999999999999999999999999999998632 2 3456999999999999
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhcccc
Q 004901 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (724)
Q Consensus 242 LReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~ 321 (724)
||+||+||||.++|+.|+.+....+..+++..++.++ .+||+.|+.+|+||+.||++|+.+++.||||+.|||+||||+
T Consensus 81 LReLPepLi~~~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~~~NLAivf~P~ 159 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIKLSDYEQRVSAVKDLI-KSLPKPNHDTLKMLFRHLCRVIEHGEKNRMTTQNLAIVFGPT 159 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccccccCChHHhhhhcccc
Confidence 9999999999999999999999888899999999966 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 322 LLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 322 Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
|||++... . ..+....+++.+|++||+|
T Consensus 160 ll~~~~~~-------------~-----~~~~~~~~~~~~ve~l~~~ 187 (187)
T cd04403 160 LLRPEQET-------------G-----NIAVHMVYQNQIVELILLE 187 (187)
T ss_pred ccCCCCcc-------------h-----HHHHHhHHHHHHHHHHhhC
Confidence 99987321 0 1122345688999999985
No 16
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=5.6e-38 Score=316.32 Aligned_cols=190 Identities=21% Similarity=0.354 Sum_probs=168.7
Q ss_pred ccccchHHHhhhc--CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCC----CCCCCccchhhhH
Q 004901 165 VVGRPILLALEDI--DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF----SADEDAHVIGDCV 238 (724)
Q Consensus 165 vFG~pL~~ll~~~--~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~----~~~~d~h~vA~lL 238 (724)
+||+||+..+... ..||.+|.+|+.+|+++|+++|||||++|+..+++++++.+++|.... ....|+|+||++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 5999999877653 579999999999999999999999999999999999999999986432 2346899999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhc
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (724)
|.|||+||+||||.+.|+.|+.+....+..+++..++.++ .+||+.|+.+|.||+.||++|+.|++.|+|++.|||+||
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~~~~NkM~~~nLAi~f 159 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEANRIEDPVERLKELRRLI-HSLPDHHYETLKHLIRHLKTVADNSEVNKMEPRNLAIVF 159 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhccccccccchHHhh
Confidence 9999999999999999999999988888899999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004901 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (724)
Q Consensus 319 gP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF 372 (724)
||+|+|++..+ . ..........+.+|+.||+||+.||
T Consensus 160 aP~l~r~~~~~--------------~---~~~~~~~~~~~~ii~~LI~~~d~~f 196 (196)
T cd04395 160 GPTLVRTSDDN--------------M---ETMVTHMPDQCKIVETLIQHYDWFF 196 (196)
T ss_pred ccccCCCCCCC--------------H---HHHHHhHHHHHHHHHHHHHhCcccC
Confidence 99999987321 0 1223345567899999999999998
No 17
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7e-38 Score=316.43 Aligned_cols=186 Identities=20% Similarity=0.345 Sum_probs=163.1
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-CCCCCCCccchhhhHHHHHh
Q 004901 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (724)
Q Consensus 166 FG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLR 243 (724)
||+||..++++ ++.||.+|.+|++||+++|+.+|||||++|+..+++++++.|++|.. ......|||+||++||.|||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLR 80 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDLVDLSGHSPHDITSVLKHFLK 80 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCccCcccCCHHHHHHHHHHHHH
Confidence 99999999987 56799999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC------------CHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCc
Q 004901 244 ELPSSPVPASCCTALLEAYKID------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (724)
Q Consensus 244 eLPePLlp~~l~~~ll~~~~~~------------~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~ 311 (724)
+||+||||.++|+.|+.+.+.. ...+++..++.+| ..||+.|+.+|+||+.||++|+.+++.|+|++
T Consensus 81 eLPePLi~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lk~li-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~ 159 (200)
T cd04408 81 ELPEPVLPFQLYDDFIALAKELQRDSEKAAESPSIVENIIRSLKELL-GRLPVSNYNTLRHLMAHLYRVAERFEDNKMSP 159 (200)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhhccCCCH
Confidence 9999999999999999876531 2357899999966 69999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 312 ~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
.|||+||||+|||++..+.. .+..+....+...+|++||.|
T Consensus 160 ~NLAivf~P~Ll~~~~~~~~---------------~~~~~~~~~~q~~~ve~li~~ 200 (200)
T cd04408 160 NNLGIVFGPTLLRPLVGGDV---------------SMICLLDTGYQAQLVEFLISN 200 (200)
T ss_pred hHhhhhhccccCCCCCCCch---------------HHHHHhccchHHHHHHHHhhC
Confidence 99999999999999843221 123345567788999999986
No 18
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=100.00 E-value=6.8e-38 Score=313.07 Aligned_cols=183 Identities=21% Similarity=0.329 Sum_probs=163.8
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-cCCCCCCCccchhhhHHHHHhh
Q 004901 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (724)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLRe 244 (724)
||+||+.++..++.||.+|.+|+.||+.+|+.+|||||++|+..+++.+++.|+.|. ......+|+|+||++||.|||+
T Consensus 1 FGv~L~~l~~~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~~~~~~~d~h~va~lLK~fLRe 80 (186)
T cd04406 1 FGVELSRLTSEDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANSVNLDDYNIHVIASVFKQWLRD 80 (186)
T ss_pred CCCchHHHHHCCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCCCCcccCCHHHHHHHHHHHHHh
Confidence 999999998877899999999999999999999999999999999999999999875 3344578999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccC
Q 004901 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (724)
Q Consensus 245 LPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr 324 (724)
||+||||.++|+.|+.+....+..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LPePLi~~~~y~~~~~~~~~~~~~~~i~~~~~li-~~LP~~n~~~L~~l~~~L~~V~~~s~~NkM~~~NLAivf~P~ll~ 159 (186)
T cd04406 81 LPNPLMTFELYEEFLRAMGLQERRETVRGVYSVI-DQLSRTHLNTLERLIFHLVRIALQEETNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhCCCccCCChHHHHHHhcccccC
Confidence 9999999999999999998888888999999855 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 004901 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLL 365 (724)
Q Consensus 325 ~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LI 365 (724)
++... | .++.++...++..+|++||
T Consensus 160 ~p~~~-----d-----------~~~~~~~~~~~~~~~~~~~ 184 (186)
T cd04406 160 CPDTT-----D-----------PLQSVQDISKTTTCVELIV 184 (186)
T ss_pred CCCCC-----C-----------HHHHHHHHhhccchhhhhc
Confidence 87321 1 1233455666778899887
No 19
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.2e-37 Score=315.29 Aligned_cols=195 Identities=24% Similarity=0.328 Sum_probs=167.7
Q ss_pred ccccchHHHhhh----cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccchhhhHHH
Q 004901 165 VVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKH 240 (724)
Q Consensus 165 vFG~pL~~ll~~----~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~ 240 (724)
|||+||..++.. ...||.+|.+|+.||++ |+.+|||||++|+..+++.+++.||+|.... ...++|+||++||.
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~-~~~~~~~vaslLK~ 78 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL-SSALPCDVAGLLKQ 78 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc-cccCHHHHHHHHHH
Confidence 799999988753 46799999999999986 6999999999999999999999999986443 35789999999999
Q ss_pred HHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccc
Q 004901 241 VLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAP 320 (724)
Q Consensus 241 fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP 320 (724)
|||+||+||||.++|+.|+.+....+..+++.+++.+ +.+||+.|+.+|+||+.||++|+.|++.||||+.|||+||||
T Consensus 79 flReLPePLi~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivfaP 157 (202)
T cd04394 79 FFRELPEPLLPYDLHEALLKAQELPTDEERKSATLLL-TCLLPDEHVNTLRYFFSFLYDVAQRCSENKMDSSNLAVIFAP 157 (202)
T ss_pred HHhcCCCcCCCHHHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHhhcc
Confidence 9999999999999999999998888778888888874 469999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 321 LLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 321 ~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
+|||+...+. .|.. .+......++.+|++||+||+.||--.+
T Consensus 158 ~L~~~~~~~~-------~~s~-------~~~~~~~~~~~vv~~lI~~~~~i~~vp~ 199 (202)
T cd04394 158 NLFQSEEGGE-------KMSS-------STEKRLRLQAAVVQTLIDNASNIGIVPD 199 (202)
T ss_pred eeecCCCccc-------ccch-------hHHHhHHHHHHHHHHHHHHHHHHccCCc
Confidence 9999873211 1110 0112345568999999999999997644
No 20
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.3e-37 Score=313.79 Aligned_cols=187 Identities=24% Similarity=0.429 Sum_probs=163.5
Q ss_pred cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-cCCCCCCCccchhhhHHHHHhhCCCCCCChhhH
Q 004901 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (724)
Q Consensus 177 ~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~ 255 (724)
.+.||.+|.+|++||+++|+++|||||++|+..+++++++.|++|. ..+....|+|+||++||.|||+||+||+|.++|
T Consensus 6 ~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~lLK~fLReLPePLi~~~~y 85 (206)
T cd04376 6 ARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVVLDENHSVHDVAALLKEFFRDMPDPLLPRELY 85 (206)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCCCcccCCHHHHHHHHHHHHHhCCCccCCHHHH
Confidence 4579999999999999999999999999999999999999999996 345556899999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccc-----------cCCCCccchhhhccccccC
Q 004901 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH-----------ENRMTPSAVAACMAPLLLR 324 (724)
Q Consensus 256 ~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~-----------~NkMt~~NLAivfgP~Llr 324 (724)
+.|+.+.... .++++..++.+| .+||+.|+.+|+||+.||++|+.|++ .||||+.|||+||||+|||
T Consensus 86 ~~~i~~~~~~-~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~~~~~~~~~~~~NkM~~~NLAivf~P~Ll~ 163 (206)
T cd04376 86 TAFIGTALLE-PDEQLEALQLLI-YLLPPCNCDTLHRLLKFLHTVAEHAADSIDEDGQEVSGNKMTSLNLATIFGPNLLH 163 (206)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCCCCHHHHHHHhhccccC
Confidence 9999988765 678899999866 69999999999999999999999986 7999999999999999999
Q ss_pred CCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 325 ~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
++..+...+++ ..+.+.....+..||++||+||+.||..++
T Consensus 164 ~~~~~~~~~~~-----------~~~~~~~~~~~~~vv~~LI~~~~~iF~~~~ 204 (206)
T cd04376 164 KQKSGEREFVQ-----------ASLRIEESTAIINVVQTMIDNYEELFMVSP 204 (206)
T ss_pred CCCCcccccch-----------hhhhHHHHHHHHHHHHHHHHhHHHHcCCCC
Confidence 98544322221 123345556678999999999999998764
No 21
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.9e-37 Score=317.25 Aligned_cols=188 Identities=21% Similarity=0.279 Sum_probs=161.1
Q ss_pred ccccchHHHhhhc----------------CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC----cC
Q 004901 165 VVGRPILLALEDI----------------DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK----TE 224 (724)
Q Consensus 165 vFG~pL~~ll~~~----------------~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~----~~ 224 (724)
|||++|++.++.. +.||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|+.+. ..
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 7999998887642 358999999999999999999999999999999999999999863 22
Q ss_pred CCCCCCccchhhhHHHHHhhCCCCCCChhhHHHHHHHHhc-----------------CCHHHHHHHHHHHHHccCChhHH
Q 004901 225 FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKI-----------------DRKEARISAMRSAILETFPEPNR 287 (724)
Q Consensus 225 ~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~ll~~~~~-----------------~~~~~ri~~l~~lIl~~LP~~n~ 287 (724)
....+++|+||++||.|||+||+||||.++|+.|+.+... .+..+++..++.+| .+||+.|+
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~ 159 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPLRKRPRILQYMKGRINEPLNTDIDQAIKEYRDLI-TRLPNLNR 159 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHhcchhhhhhccccccccccCHHHHHHHHHHHH-HHCCHHHH
Confidence 3356799999999999999999999999999999887643 34578889999865 69999999
Q ss_pred HHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 288 RLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 288 ~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
.+|+||+.||++|++|++.|||++.|||+||||+||+++... |. .......+.+|++||+|
T Consensus 160 ~~L~~L~~~L~~V~~~s~~NkM~~~NLAivfaP~Ll~~~~~~---------~~----------~~~~~~~~~~ve~lI~~ 220 (225)
T cd04396 160 QLLLYLLDLLAVFARNSDKNLMTASNLAAIFQPGILSHPDHE---------MD----------PKEYKLSRLVVEFLIEH 220 (225)
T ss_pred HHHHHHHHHHHHHHHhhccccCChhhhheeeccccCCCCccc---------cC----------HHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999987321 10 11223467899999999
Q ss_pred ccccc
Q 004901 368 YENIF 372 (724)
Q Consensus 368 ~~~IF 372 (724)
++.+.
T Consensus 221 ~~~~~ 225 (225)
T cd04396 221 QDKFL 225 (225)
T ss_pred HHhhC
Confidence 99863
No 22
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=100.00 E-value=4.1e-37 Score=307.60 Aligned_cols=185 Identities=25% Similarity=0.375 Sum_probs=167.5
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-cCCCCCCCccchhhhHHHHHhh
Q 004901 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRE 244 (724)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLRe 244 (724)
||+||..++.++..||.+|.+|++||+.+|+++|||||++|+..+++++++.+++|. ......+|+|+||++||.|||+
T Consensus 1 FG~~L~~~~~~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~~va~~LK~flr~ 80 (186)
T cd04377 1 FGVSLSSLTSEDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDSVNLEDYPIHVITSVLKQWLRE 80 (186)
T ss_pred CCCCHHHHHhCCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcccCcccCCHHHHHHHHHHHHHc
Confidence 999999999888899999999999999999999999999999999999999999984 3334668999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccC
Q 004901 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (724)
Q Consensus 245 LPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr 324 (724)
||+||||+++|+.|+.+....+..+++..++.+| .+||+.|+.+|.||+.||++|+.|++.|+|++.|||+||||+|||
T Consensus 81 LpepLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf~P~ll~ 159 (186)
T cd04377 81 LPEPLMTFELYENFLRAMELEEKQERVRALYSVL-EQLPRANLNTLERLIFHLVRVALQEEVNRMSANALAIVFAPCILR 159 (186)
T ss_pred CCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHhhHhcC
Confidence 9999999999999999998888888999999865 699999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 325 ~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
++.... .+.+++...+...+|++||+.
T Consensus 160 ~~~~~~----------------~~~~~~d~~~~~~~~e~li~~ 186 (186)
T cd04377 160 CPDTAD----------------PLQSLQDVSKTTTCVETLIKE 186 (186)
T ss_pred CCCCCC----------------HHHHHHHHHHHHHHHHHHhhC
Confidence 873211 123566778889999999974
No 23
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.9e-37 Score=310.05 Aligned_cols=185 Identities=24% Similarity=0.406 Sum_probs=165.7
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc--CC----CCCCCccchhhhH
Q 004901 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT--EF----SADEDAHVIGDCV 238 (724)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~--~~----~~~~d~h~vA~lL 238 (724)
||+||..++.+. ..||.+|.+|+.||+++|+.+|||||++|+..+++++++.+++|.. .+ ....|||+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 999999998764 5799999999999999999999999999999999999999999852 21 1246999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhc
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (724)
|.|||+||+||+|.++|+.|+.+.+..+...++..++.++ .+||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~nLaivf 159 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAKIEDESRRRDALHGLI-NDLPDANYATLRALMFHLARIKEHESVNRMSVNNLAIIW 159 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhhhCCCHhHHHHHH
Confidence 9999999999999999999999998888888999999966 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004901 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (724)
Q Consensus 319 gP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF 372 (724)
||+|||++..+ .....+...++++||+||+.||
T Consensus 160 ~P~l~~~~~~~---------------------~~~~~~~~~~~~~LI~~~~~iF 192 (192)
T cd04398 160 GPTLMNAAPDN---------------------AADMSFQSRVIETLLDNAYQIF 192 (192)
T ss_pred hhhhCCCCccc---------------------hhhHHHHHHHHHHHHHHHHHhC
Confidence 99999987320 1123446789999999999998
No 24
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-37 Score=309.98 Aligned_cols=177 Identities=21% Similarity=0.369 Sum_probs=161.4
Q ss_pred ccccchHHHhhh------cCCCcHHHHHHHHHHHhcC-CCcCCeeecCCCHHHHHHHHHHHhcCC-cCC---CCCCCccc
Q 004901 165 VVGRPILLALED------IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGK-TEF---SADEDAHV 233 (724)
Q Consensus 165 vFG~pL~~ll~~------~~~VP~il~~~i~~L~~~G-l~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~---~~~~d~h~ 233 (724)
|||+||..+++. +..||.+|.+|+.||+++| +.+|||||++|+...++++++.|+.|. ..+ ....|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 799999999875 3469999999999999987 799999999999999999999999984 222 23579999
Q ss_pred hhhhHHHHHhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCcc
Q 004901 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (724)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~-~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~ 312 (724)
||++||.|||+||+||+|.++|+.|..+.+.. +..+++..++.+| .+||+.|+.+|++|+.||++|+.|++.|+||++
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~ 159 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLVEENHDRSQRALELKDLV-SQLPQANYDLLYVLFSFLRKIIEHSDVNKMNLR 159 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCChH
Confidence 99999999999999999999999999988766 7788999999966 689999999999999999999999999999999
Q ss_pred chhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 004901 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (724)
Q Consensus 313 NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~ 374 (724)
|||+||||+|++|. .++..||++|+.||++
T Consensus 160 NLa~vf~P~L~~~~--------------------------------~~~~~~~~~~~~~f~~ 189 (190)
T cd04400 160 NVCIVFSPTLNIPA--------------------------------GIFVLFLTDFDCIFGG 189 (190)
T ss_pred HhhhhcCCCCCCCH--------------------------------HHHHHHHHHHHHHcCC
Confidence 99999999999875 5799999999999986
No 25
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=100.00 E-value=3.4e-37 Score=312.26 Aligned_cols=187 Identities=20% Similarity=0.304 Sum_probs=162.3
Q ss_pred cccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-CCCCCCCccchhhhHHHHHh
Q 004901 166 VGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (724)
Q Consensus 166 FG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLR 243 (724)
||+||..++.+ ++.||.+|.+|++||+++|+.+|||||++|+...+++++..|++|.. ......|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~~~~~~~~~h~va~~LK~fLR 80 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDLVELSELSPHDISSVLKLFLR 80 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCccccccCCHHHHHHHHHHHHH
Confidence 99999999986 57899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC--------------CHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCC
Q 004901 244 ELPSSPVPASCCTALLEAYKID--------------RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (724)
Q Consensus 244 eLPePLlp~~l~~~ll~~~~~~--------------~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkM 309 (724)
+||+||||.++|+.|+.+.... +...++..++.+| ..||+.|+.+|+||+.||++|+.|++.|||
T Consensus 81 eLpePlip~~~y~~~~~~~~~~~~~~e~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 159 (203)
T cd04378 81 QLPEPLILFRLYNDFIALAKEIQRDTEEDKAPNTPIEVNRIIRKLKDLL-RQLPASNYNTLQHLIAHLYRVAEQFEENKM 159 (203)
T ss_pred hCCCccCCHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999999986531 2245788999855 699999999999999999999999999999
Q ss_pred CccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 310 t~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
++.|||+||||+|||++.... ...+..+....++..||++||.|
T Consensus 160 ~~~NLaivf~P~Ll~~~~~~~--------------~~~~~~l~~~~~q~~~ve~li~~ 203 (203)
T cd04378 160 SPNNLGIVFGPTLIRPRPGDA--------------DVSLSSLVDYGYQARLVEFLITN 203 (203)
T ss_pred CHHHhhhhhccccCCCCCCCc--------------chhHHHHHhhhhhHHHHHHHhhC
Confidence 999999999999999984211 00123345567788999999986
No 26
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.4e-37 Score=305.44 Aligned_cols=161 Identities=27% Similarity=0.506 Sum_probs=151.3
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-cCC-CCCCCccchhhhHHHHHh
Q 004901 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEF-SADEDAHVIGDCVKHVLR 243 (724)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~-~~~~d~h~vA~lLK~fLR 243 (724)
||+||..++..+..||.+|.+|+.||+++|+.+|||||++|+..+++++++.|++|. ..+ ..++|+|+||++||.|||
T Consensus 1 FG~pL~~~~~~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~fLr 80 (185)
T cd04373 1 FGVPLANVVTSEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLVSKDFTVNAVAGALKSFFS 80 (185)
T ss_pred CCCchHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHHHHHHHh
Confidence 999999999988899999999999999999999999999999999999999999975 333 245789999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhcccccc
Q 004901 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (724)
Q Consensus 244 eLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Ll 323 (724)
+||+||+|+++|+.|+++....+..+++..++.+| ++||+.|+.+|+||+.||++|+++++.|+||+.|||+||||+||
T Consensus 81 eLPePlip~~~~~~~~~~~~~~~~~~~i~~l~~li-~~LP~~n~~~L~~l~~~L~~v~~~s~~NkM~~~NLAi~f~P~L~ 159 (185)
T cd04373 81 ELPDPLIPYSMHLELVEAAKINDREQRLHALKELL-KKFPPENFDVFKYVITHLNKVSQNSKVNLMTSENLSICFWPTLM 159 (185)
T ss_pred cCCchhccHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHHHHHHccccC
Confidence 99999999999999999999888889999999966 69999999999999999999999999999999999999999999
Q ss_pred CCCC
Q 004901 324 RPLL 327 (724)
Q Consensus 324 r~~~ 327 (724)
|+..
T Consensus 160 ~~~~ 163 (185)
T cd04373 160 RPDF 163 (185)
T ss_pred CCCC
Confidence 9873
No 27
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=7.8e-37 Score=311.22 Aligned_cols=187 Identities=21% Similarity=0.314 Sum_probs=158.7
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-CCCCCCCccchhhhHHHHHh
Q 004901 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLR 243 (724)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLR 243 (724)
||+||..++.+. ++||.+|.+|++||+++|+.+|||||++|+..++++++..|++|.. .....+|+|+||++||.|||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~~~~~~~~~h~va~~LK~fLR 80 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDLVELSELSPHDISNVLKLYLR 80 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCccccccCCHHHHHHHHHHHHH
Confidence 999999998774 6899999999999999999999999999999999999999999863 33456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcC---C-------------------HHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhh
Q 004901 244 ELPSSPVPASCCTALLEAYKID---R-------------------KEARISAMRSAILETFPEPNRRLLQRILRMMHTIS 301 (724)
Q Consensus 244 eLPePLlp~~l~~~ll~~~~~~---~-------------------~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~ 301 (724)
+||+||||.++|+.|+.+.... + ...++.+++.+| .+||++|+.+|+||+.||++|+
T Consensus 81 eLPePLi~~~~~~~~~~~~~~~~~~~e~~~~~~~s~~~~~~~~~~~~~~~~~l~~li-~~LP~~n~~~L~~L~~~L~~V~ 159 (211)
T cd04409 81 QLPEPLILFRLYNEFIGLAKESQHVNETQEAKKNSDKKWPNMCTELNRILLKSKDLL-RQLPAPNYNTLQFLIVHLHRVS 159 (211)
T ss_pred hCCCcccCHHHHHHHHHHHHhhcccccccccccccccccccchhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876421 0 012466788855 6999999999999999999999
Q ss_pred cccccCCCCccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 302 SHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 302 ~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
+|++.|+|++.|||+||||+||||...+. ...++.+....++..||++||.+
T Consensus 160 ~~s~~NkM~~~NLAivf~P~Llrp~~~~~--------------~~~~~~~~~~~~~~~~ve~li~~ 211 (211)
T cd04409 160 EQAEENKMSASNLGIIFGPTLIRPRPTDA--------------TVSLSSLVDYPHQARLVELLITY 211 (211)
T ss_pred cccccCCCChHHhhhhccccccCCCCCCc--------------chhHHHHhhhhhHHHHHHHHhhC
Confidence 99999999999999999999999873211 00122344556788999999974
No 28
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=100.00 E-value=2.8e-36 Score=303.67 Aligned_cols=163 Identities=19% Similarity=0.308 Sum_probs=151.3
Q ss_pred cccchHHHhhhcC-CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcC---CCCCCCccchhhhHHHH
Q 004901 166 VGRPILLALEDID-GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHV 241 (724)
Q Consensus 166 FG~pL~~ll~~~~-~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~---~~~~~d~h~vA~lLK~f 241 (724)
||+||..++++.. .||.+|.+|++||+++|+.+|||||++|+..+++++++.||+|... .....|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 9999999998754 6999999999999999999999999999999999999999997532 23568999999999999
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhcccc
Q 004901 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (724)
Q Consensus 242 LReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~ 321 (724)
||+||+||||.++|+.|+.+....+...++.+++.++ .+||+.|+.+|.||+.||++|+.+++.|||++.|||+||||+
T Consensus 81 LReLPePLip~~~y~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~ 159 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGIALSDPVAKESCMLNLL-LSLPDPNLVTFLFLLHHLKRVAEREEVNKMSLHNLATVFGPT 159 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHccc
Confidence 9999999999999999999998888888999999855 699999999999999999999999999999999999999999
Q ss_pred ccCCCCCC
Q 004901 322 LLRPLLAG 329 (724)
Q Consensus 322 Llr~~~~~ 329 (724)
|||++...
T Consensus 160 Llr~~~~~ 167 (196)
T cd04387 160 LLRPSEKE 167 (196)
T ss_pred cCCCCccc
Confidence 99998543
No 29
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=100.00 E-value=2.5e-36 Score=302.69 Aligned_cols=184 Identities=26% Similarity=0.434 Sum_probs=162.5
Q ss_pred cccccchHHHhhh---cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-CCCCCCCccchhhhHH
Q 004901 164 LVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVK 239 (724)
Q Consensus 164 ~vFG~pL~~ll~~---~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~lLK 239 (724)
++||+||..++++ .++||.+|.+|++||+++|+.+|||||++|+...++.+++.+++|.. .+....|||++|++||
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~~~~~~~d~~~va~~lK 80 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEVDLSKEADVCSAASLLR 80 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCCCccccCCHHHHHHHHH
Confidence 4899999999876 35799999999999999999999999999999999999999999974 3445689999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcC-CHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhc
Q 004901 240 HVLRELPSSPVPASCCTALLEAYKID-RKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (724)
Q Consensus 240 ~fLReLPePLlp~~l~~~ll~~~~~~-~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (724)
.|||+||+||+|.++|+.|+.+++.. ...+++..++.+| .+||+.|+.+|.+|+.||++|+.|++.|+||+.|||+||
T Consensus 81 ~flr~Lp~pLi~~~~~~~l~~~~~~~~~~~~~~~~l~~li-~~Lp~~n~~~L~~l~~~l~~V~~~s~~NkMt~~nLA~vf 159 (189)
T cd04393 81 LFLQELPEGLIPASLQIRLMQLYQDYNGEDEFGRKLRDLL-QQLPPVNYSLLKFLCHFLSNVASQHHENRMTAENLAAVF 159 (189)
T ss_pred HHHHhCCCccCCHHHHHHHHHHHHHccChHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHhhhhc
Confidence 99999999999999999999987654 5677888999965 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 319 gP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
||+|||.+.. .++ +.....++.|+..||+|
T Consensus 160 ~P~l~~~~~~----~~~---------------~~~~~~~~~~~~~li~~ 189 (189)
T cd04393 160 GPDVFHVYTD----VED---------------MKEQEICSRIMAKLLEN 189 (189)
T ss_pred cCceeCCCCC----ccc---------------HHHHHHHHHHHHHHhcC
Confidence 9999998731 111 22345577899999987
No 30
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.3e-36 Score=304.48 Aligned_cols=195 Identities=22% Similarity=0.322 Sum_probs=159.8
Q ss_pred cccchHHHhhhc---CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC--cCCC--CCCCccchhhhH
Q 004901 166 VGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDCV 238 (724)
Q Consensus 166 FG~pL~~ll~~~---~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~--~~~~--~~~d~h~vA~lL 238 (724)
||+||..++.+. ..||.+|.+|++||+.+|+.+|||||++|+..+++.|++.|+++. ..+. ...|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 999999999873 469999999999999999999999999999999999999999874 2222 234899999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCC---HHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchh
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYKIDR---KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~~~~---~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 315 (724)
|.|||+||+||||.++|+.|+.+..... ...++..++.+| ++||+.|+.+|+||+.||++|+.|++.||||+.|||
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~~~~~~~~~~~~~~~~~~li-~~LP~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLA 159 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEALAVALPNDVQTNTHLTLSII-DCLPLSAKATLLLLLDHLSLVLSNSERNKMTPQNLA 159 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhccChhhHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhH
Confidence 9999999999999999999999876543 233456777755 699999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCC-ccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004901 316 ACMAPLLLRPLLAGEC-ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (724)
Q Consensus 316 ivfgP~Llr~~~~~~~-~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~ 368 (724)
+||||+||+++..... .+....+|....+. ...+...++.+||+-|
T Consensus 160 ivf~P~Ll~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 206 (207)
T cd04379 160 VCFGPVLMFCSQEFSRYGISPTSKMAAVSTV-------DFKQHIEVLHYLLQIW 206 (207)
T ss_pred HhhccccCCCCcccccccCCCCccccccchh-------hHHHHHHHHHHHHHhc
Confidence 9999999999865432 11112223222222 2345668899999865
No 31
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.7e-36 Score=306.46 Aligned_cols=186 Identities=23% Similarity=0.379 Sum_probs=156.8
Q ss_pred cccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-CCC-CCCCccchhhhHHHHHh
Q 004901 166 VGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFS-ADEDAHVIGDCVKHVLR 243 (724)
Q Consensus 166 FG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~-~~~d~h~vA~lLK~fLR 243 (724)
||.||.+ ++++ +|.+|++||++ |+.+|||||++|+..+++.|++.|++|.. .+. ..+|+|+||++||.|||
T Consensus 1 ~~~~~~~-----~~~~-~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~~~~~~~~h~va~lLK~flR 73 (208)
T cd04392 1 FGAPLTE-----EGIA-QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDLESGGFHAHDCATVLKGFLG 73 (208)
T ss_pred CCCCccc-----cccH-HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCcccccCCHHHHHHHHHHHHH
Confidence 7888832 3455 77899999998 99999999999999999999999999964 333 35799999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHh------------cCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCc
Q 004901 244 ELPSSPVPASCCTALLEAYK------------IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (724)
Q Consensus 244 eLPePLlp~~l~~~ll~~~~------------~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~ 311 (724)
+||+||||.++|+.|+.+.. ..+.+.++.+++.++ .+||+.|+.+|+||+.||++|+.|++.||||+
T Consensus 74 eLPePLi~~~~y~~~~~i~~l~~~~~~~~~~~~~~~~~~i~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~ 152 (208)
T cd04392 74 ELPEPLLTHAHYPAHLQIADLCQFDEKGNKTSAPDKERLLEALQLLL-LLLPEENRNLLKLILDLLYQTAKHEDKNKMSA 152 (208)
T ss_pred hCCCccCCHHHHHHHHHHHHhhcccccccccCCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccCCCCH
Confidence 99999999999999987654 234566788898855 69999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 312 ~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
.|||+||||+||||+..+. ..+ ......++.||++||+||+.||+...
T Consensus 153 ~NLAivf~P~Ll~~~~~~~--------------~~~---~~~~~~~~~iv~~lI~~~~~iF~~~~ 200 (208)
T cd04392 153 DNLALLFTPHLICPRNLTP--------------EDL---HENAQKLNSIVTFMIKHSQKLFKAPA 200 (208)
T ss_pred HHHHHHhCcccCCCCCCCH--------------HHH---HHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 9999999999999863211 111 12345678999999999999999865
No 32
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only]
Probab=100.00 E-value=5.3e-37 Score=352.87 Aligned_cols=336 Identities=18% Similarity=0.227 Sum_probs=244.1
Q ss_pred ceEEEeeeeee----ccC----CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCc----------eeeeeeCcEEcCCCc
Q 004901 18 TVFKSGPLFIS----SKG----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGG----------EVNLTLGGIDLNNSG 79 (724)
Q Consensus 18 ~V~KeG~L~l~----Kkg----~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~----------~~~l~L~~I~L~~~~ 79 (724)
...|+||||+. |+| .....|+..|.+|.++.|+.|++.....++..+ .-.+++..|.+.-..
T Consensus 922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y 1001 (1973)
T KOG4407|consen 922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY 1001 (1973)
T ss_pred hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh
Confidence 36789999955 343 457789999999999999999987663222111 111223322222111
Q ss_pred ceeeccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCcchhhccC-------------CccccCCC--
Q 004901 80 SVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGH-------------NGIFRNDT-- 144 (724)
Q Consensus 80 sv~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~~a~~~g~-------------~~~f~~~~-- 144 (724)
. ....+..|.++. -+--.+.|+|++.++|-.|+..+++......-...|++. +++.-++.
T Consensus 1002 s---etkrn~vfRLTt--~d~ce~lfqaeDrddmlgG~~ttq~St~~na~~~~V~~r~~a~~s~~~s~~~~~kae~~pst 1076 (1973)
T KOG4407|consen 1002 S---ETKRNQVFRLTT--NDLCEGLFQAEDRDDMLGGLSTTQSSTTENAKNRLVMHRYIAKNSQLQSPTANKKAETDPST 1076 (1973)
T ss_pred h---hhhhhhHHHhHH--HHHHhHhhccCccccccchhhhhhhcccccccccccccchhhhcccccCccccchhhcCCCC
Confidence 1 122334444442 223679999999999999999997665432222222221 00000000
Q ss_pred -------------------Ccc------------ccCccccccCCCCC-----------------------------CCc
Q 004901 145 -------------------NDT------------IEGSFHQWRDKRPV-----------------------------KSL 164 (724)
Q Consensus 145 -------------------~~~------------~~~~~~~~k~k~~~-----------------------------~~~ 164 (724)
+.. -..+...+|+|+.- +-.
T Consensus 1077 ~~ssl~~~at~~~a~s~~~sq~~~p~~~se~k~~p~~d~~~PKsk~~Wkk~~~~~~gsg~g~~~~~~g~~~~~~a~~~~~ 1156 (1973)
T KOG4407|consen 1077 VPSSLQTMATTSSAFSHHSSQAMGPSRDSENKEAPTADATTPKSKRKWKKSKAAKQGSGGGSSGSSSGSQQQGAAGAPQP 1156 (1973)
T ss_pred CcchhHHHHHHhhhccCccccccCcccccccccCCcccCCCCccccchhhhhhhhccCCCCCCCCcccccccccccCcCc
Confidence 000 01111223332111 114
Q ss_pred ccccchHHHhhh--cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc------CCCCCCCccchhh
Q 004901 165 VVGRPILLALED--IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT------EFSADEDAHVIGD 236 (724)
Q Consensus 165 vFG~pL~~ll~~--~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~------~~~~~~d~h~vA~ 236 (724)
+|||+|...--. .+.||.+|..|+..++.+||.+.||||++||...|..|.+.++++.+ .++.+.|+++|.+
T Consensus 1157 ~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvNVVSS 1236 (1973)
T KOG4407|consen 1157 VLGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVNVVSS 1236 (1973)
T ss_pred ccccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhHHHHH
Confidence 999999543211 35699999999999999999999999999999999999999999842 2345679999999
Q ss_pred hHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhh
Q 004901 237 CVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (724)
Q Consensus 237 lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAi 316 (724)
|||.|||.||+||||..+|..||++-+..+.-+|+..|+.+| +.||.++|.+|++|+.||.+|+.|+++|||-+.||||
T Consensus 1237 LLK~F~RkLPepL~t~~~Y~~FIeAnrk~~~l~Rl~~Lr~l~-~~LPrhhYeTlkfLi~HL~~Vt~nsdvNkMEprNLAi 1315 (1973)
T KOG4407|consen 1237 LLKMFLRKLPEPLLTDKLYPFFIEANRKSTHLNRLHKLRNLL-RKLPRHHYETLKFLIVHLSEVTKNSDVNKMEPRNLAI 1315 (1973)
T ss_pred HHHHHHHhCCcccccccchhhhhhhcccccHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHHHhcccccccccccceeE
Confidence 999999999999999999999999999999899999999955 7999999999999999999999999999999999999
Q ss_pred hccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 317 vfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
+|||+|+|++. |+.+. +..+...+++||+.||.+|+++|++.-
T Consensus 1316 ~FGPsiVRts~--------------Dnm~t---mVthM~dQckIVEtLI~~~dwfF~esg 1358 (1973)
T KOG4407|consen 1316 MFGPSIVRTSD--------------DNMAT---MVTHMSDQCKIVETLIHYNDWFFDESG 1358 (1973)
T ss_pred EeccceeccCC--------------ccHHH---HhhcchhhhhHHHHHHhhhhheeccCC
Confidence 99999999872 23333 345567789999999999999999854
No 33
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.6e-35 Score=294.12 Aligned_cols=180 Identities=21% Similarity=0.392 Sum_probs=161.3
Q ss_pred ccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcC---CCCCCCccchhhhHHHHHh
Q 004901 167 GRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE---FSADEDAHVIGDCVKHVLR 243 (724)
Q Consensus 167 G~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~---~~~~~d~h~vA~lLK~fLR 243 (724)
|.+|+...-...+||.+|.+|+.||+++|+.+|||||++|+...+++|++.|+.+... .....|||+||++||.|||
T Consensus 2 ~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yLr 81 (184)
T cd04385 2 GPALEDQQLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFLR 81 (184)
T ss_pred CccHHHhhhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHHH
Confidence 6778777777789999999999999999999999999999999999999999886422 2456899999999999999
Q ss_pred hCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhcccccc
Q 004901 244 ELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLL 323 (724)
Q Consensus 244 eLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Ll 323 (724)
+||+||||.++|+.|+.+.+..+...++..++.+| .+||+.|+.+|++|+.||++|+.|++.|+|++.|||+||||+||
T Consensus 82 eLP~pLi~~~~~~~~~~~~~~~~~~~~i~~l~~~i-~~LP~~n~~~L~~l~~~l~~V~~~~~~NkM~~~nLaiv~~P~ll 160 (184)
T cd04385 82 DLPDPLLTSELHAEWIEAAELENKDERIARYKELI-RRLPPINRATLKVLIGHLYRVQKHSDENQMSVHNLALVFGPTLF 160 (184)
T ss_pred hCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHcccccCCChHHhhhhhccccC
Confidence 99999999999999999999888889999999966 69999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004901 324 RPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (724)
Q Consensus 324 r~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~ 368 (724)
|++.. .........+||+.||+||
T Consensus 161 ~~~~~---------------------~~~~~~~~~~v~~~Li~~~ 184 (184)
T cd04385 161 QTDEH---------------------SVGQTSHEVKVIEDLIDNY 184 (184)
T ss_pred CCCcc---------------------chhHHHHHHHHHHHHHhcC
Confidence 98731 0122345779999999998
No 34
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=100.00 E-value=5e-35 Score=293.90 Aligned_cols=178 Identities=21% Similarity=0.318 Sum_probs=157.8
Q ss_pred cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-cCCCCCCCccchhhhHHHHHhhCCCCCCChhhH
Q 004901 177 IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSSPVPASCC 255 (724)
Q Consensus 177 ~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~ 255 (724)
...||.+|.+|+.||+++|+.+|||||++|+..+++.+++.|++|. .......|+|+||++||.|||+||+||||.++|
T Consensus 14 ~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~~~~~~~d~h~vaslLK~fLReLPePLi~~~~y 93 (193)
T cd04382 14 SPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTVPNLSKVDIHVICGCLKDFLRSLKEPLITFALW 93 (193)
T ss_pred CCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCCcccccCCHHHHHHHHHHHHHhCCCcCCCHHHH
Confidence 3579999999999999999999999999999999999999999885 334455699999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCCCCCCCcccc
Q 004901 256 TALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELED 335 (724)
Q Consensus 256 ~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~~ed 335 (724)
+.|+++.+..+.+.++..++.+| ..||+.|+.+|+||+.||++|+. ++.||||+.|||+||||+||+++..+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~-s~~NkM~~~NLAivf~P~L~~~~~~~~----- 166 (193)
T cd04382 94 KEFMEAAEILDEDNSRAALYQAI-SELPQPNRDTLAFLILHLQRVAQ-SPECKMDINNLARVFGPTIVGYSVPNP----- 166 (193)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhc-cccCCCChHHhhhhhhchhcCCCCCCc-----
Confidence 99999999888889999999966 69999999999999999999999 999999999999999999999873211
Q ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004901 336 DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (724)
Q Consensus 336 ~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~I 371 (724)
..++++..+..++.+|+.||++-+..
T Consensus 167 ----------~~~~~~~~~~~~~~vve~Li~~~~~~ 192 (193)
T cd04382 167 ----------DPMTILQDTVRQPRVVERLLEIPSDY 192 (193)
T ss_pred ----------cHHHHHHHhHHHHHHHHHHHhCCccc
Confidence 11345666777889999999987653
No 35
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=2.9e-35 Score=299.72 Aligned_cols=189 Identities=16% Similarity=0.240 Sum_probs=161.2
Q ss_pred cccchHHHhhhc-CCCcHHHHHHHHHHHhcC--CCcC----CeeecCCCHHHHHHHHHHHhcCCcCC-----CCCCCccc
Q 004901 166 VGRPILLALEDI-DGGPSFLEKALRFLEKFG--TKVE----GILRQAADVEEVDRRVQEYEQGKTEF-----SADEDAHV 233 (724)
Q Consensus 166 FG~pL~~ll~~~-~~VP~il~~~i~~L~~~G--l~~E----GIFR~sg~~~~v~~L~~~ld~g~~~~-----~~~~d~h~ 233 (724)
||+||..++... ..||.+|.+|+.||+++| +..+ ||||++|+...+++|++.|++|.... ...+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 999999999874 479999999999999965 3333 99999999999999999999985332 34689999
Q ss_pred hhhhHHHHHhhCCCCCCChhhHHHHHHHHhc------CCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccC
Q 004901 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKI------DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHEN 307 (724)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~ll~~~~~------~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~N 307 (724)
||++||.|||+||+||+|+++|+.|+.+... .+.++++.+++.++ .+||.+|+.+|++|+.||++|+.++..|
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~~~~~~~~~~~~~~~r~~~l~~~l-~~LP~~n~~~L~~li~hL~rv~~~~~~~ 159 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSLYSAYPPSQEDSDTARIQGLQSTL-SQLPKSHIATLDAIITHFYRLIEITKMG 159 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHHHHhccccccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999887532 45788999999965 6999999999999999999999887666
Q ss_pred ---CCCccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 004901 308 ---RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (724)
Q Consensus 308 ---kMt~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~ 374 (724)
||++.|||+||||+|+|+....... ....++..+|++||+||+.||++
T Consensus 160 ~~~kM~~~nLa~vfgp~llr~~~~~~~~-------------------~~~~~~~~~~e~Li~~~~~iF~~ 210 (212)
T cd04399 160 ESEEEYADKLATSLSREILRPIIESLLT-------------------IGDKHGYKFFRDLLTHKDQIFSE 210 (212)
T ss_pred cccccCHHHHHHHhhhhhcCCCcccccc-------------------cccHHHHHHHHHHHHhHHHhccc
Confidence 6999999999999999987432110 11245679999999999999986
No 36
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=4.4e-35 Score=293.03 Aligned_cols=178 Identities=21% Similarity=0.245 Sum_probs=152.5
Q ss_pred cccchHHHhhhc------CCCcHHHHHHHHHHHh-cCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccchhhhH
Q 004901 166 VGRPILLALEDI------DGGPSFLEKALRFLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (724)
Q Consensus 166 FG~pL~~ll~~~------~~VP~il~~~i~~L~~-~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (724)
||+||++++.+. ..||.+|..|+++|.+ +|+.+|||||++|+...++++++.|++|...+....|+|+||++|
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~~~~~d~h~va~lL 80 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPLSGLEDPHVPASLL 80 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCccccCCHHHHHHHH
Confidence 999999998652 3599999999999865 899999999999999999999999999987666678999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcc--cccCCCCccchhh
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSH--AHENRMTPSAVAA 316 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~--s~~NkMt~~NLAi 316 (724)
|.|||+||+||+|.++|+.++.+... ...++.+| .+||+.|+.+|.||+.||+.|+.+ ++.|||++.|||+
T Consensus 81 K~fLReLpePli~~~~~~~~i~~~~~------~~~~~~li-~~LP~~n~~~L~~l~~~L~~v~~~~~~~~NkM~~~NLAi 153 (187)
T cd04389 81 KLWLRELEEPLIPDALYQQCISASED------PDKAVEIV-QKLPIINRLVLCYLINFLQVFAQPENVAHTKMDVSNLAM 153 (187)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHhhcC------HHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHH
Confidence 99999999999999999999886532 23456644 699999999999999999999975 4789999999999
Q ss_pred hccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 317 CMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 317 vfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
||||+|||++..++ ...+.+..+...+|+.||+|
T Consensus 154 vf~P~l~~~~~~~~-----------------~~~~~~~~~~~~~~~~lI~~ 187 (187)
T cd04389 154 VFAPNILRCTSDDP-----------------RVIFENTRKEMSFLRTLIEH 187 (187)
T ss_pred HHccccCCCCCCCH-----------------HHHHHccHHHHHHHHHHhcC
Confidence 99999999873211 12344566788999999987
No 37
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=100.00 E-value=1.1e-34 Score=293.40 Aligned_cols=171 Identities=24% Similarity=0.403 Sum_probs=149.7
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHH-HhcC-----CcCCCC-CCCccchhhhHHHHHhhCCCCCC
Q 004901 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE-YEQG-----KTEFSA-DEDAHVIGDCVKHVLRELPSSPV 250 (724)
Q Consensus 178 ~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~-ld~g-----~~~~~~-~~d~h~vA~lLK~fLReLPePLl 250 (724)
+..|.||.+|++||+++|+.+|||||++|+...|++++.. ++.+ ..++.. .+|+|+||++||.|||+||+|||
T Consensus 26 ~~~~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~~~~d~h~va~lLK~fLReLPePLi 105 (203)
T cd04374 26 DIGFKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDNSEWEIKTITSALKTYLRNLPEPLM 105 (203)
T ss_pred cccHHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCccccccccccccHHHHHHHHHHHHHcCCCCcC
Confidence 4456789999999999999999999999999999999875 5654 233333 57999999999999999999999
Q ss_pred ChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCCCCCC
Q 004901 251 PASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGE 330 (724)
Q Consensus 251 p~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~ 330 (724)
|+++|+.|+.+....+.+.++..++.+| ..||+.|+.+|++|+.||++|+.|++.|||++.|||+||||+|||++...
T Consensus 106 ~~~~y~~~i~~~~~~~~~~ri~~l~~li-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Llr~~~~~- 183 (203)
T cd04374 106 TYELHNDFINAAKSENLESRVNAIHSLV-HKLPEKNREMLELLIKHLTNVSDHSKKNLMTVSNLGVVFGPTLLRPQEET- 183 (203)
T ss_pred CHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHhccccCCCCCcc-
Confidence 9999999999999888899999999966 69999999999999999999999999999999999999999999987211
Q ss_pred CccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 331 CELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 331 ~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
.+++......+.||++||+|
T Consensus 184 -----------------~~~~~~~~~~~~vve~LIeN 203 (203)
T cd04374 184 -----------------VAAIMDIKFQNIVVEILIEN 203 (203)
T ss_pred -----------------HHHHHHhHHHHHHhhhHhcC
Confidence 12344566778899999987
No 38
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=100.00 E-value=3.2e-34 Score=288.01 Aligned_cols=177 Identities=19% Similarity=0.280 Sum_probs=150.0
Q ss_pred hHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-cCCCCCCCccchhhhHHHHHhhCCCC
Q 004901 170 ILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVLRELPSS 248 (724)
Q Consensus 170 L~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fLReLPeP 248 (724)
|.+.+...+.+|.+|.+|+++|+++|+++|||||++|+.. +.++++.|+.+. ......+|+|+||++||.|||+||+|
T Consensus 5 ~~~~~~~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~d~~~~dv~~va~~LK~ylReLPeP 83 (200)
T cd04388 5 LTEQFSPPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASVDLEQFDVAALADALKRYLLDLPNP 83 (200)
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhCCCc
Confidence 4444445678999999999999999999999999999775 778999999853 23345689999999999999999999
Q ss_pred CCChhhHHHHHHHHh-cCCHHHHHHHHHHHHH-ccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCC
Q 004901 249 PVPASCCTALLEAYK-IDRKEARISAMRSAIL-ETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (724)
Q Consensus 249 Llp~~l~~~ll~~~~-~~~~~~ri~~l~~lIl-~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~ 326 (724)
|||+.+|+.|+.+.. ..+.++++..++.+|. ..||+.|+.+|+||+.||++|++|+..|+|++.|||+||||+|||++
T Consensus 84 Lip~~~y~~fi~~~~~~~~~~~~~~~l~~li~~~~LP~~n~~tL~~Li~HL~rV~~~s~~NkM~~~NLAiVFgPtL~r~~ 163 (200)
T cd04388 84 VIPAPVYSEMISRAQEVQSSDEYAQLLRKLIRSPNLPHQYWLTLQYLLKHFFRLCQSSSKNLLSARALAEIFSPLLFRFQ 163 (200)
T ss_pred cCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHhHHHhhhhhcCCC
Confidence 999999999999874 5567788999998552 27999999999999999999999999999999999999999999998
Q ss_pred CCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Q 004901 327 LAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEY 368 (724)
Q Consensus 327 ~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~ 368 (724)
.... . ...+...+|++||.++
T Consensus 164 ~~~~---~------------------~~~~~~~vvE~Li~~~ 184 (200)
T cd04388 164 PASS---D------------------SPEFHIRIIEVLITSE 184 (200)
T ss_pred cccc---c------------------chhhHHHHHHHHHHHH
Confidence 4311 1 1234678999999863
No 39
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.1e-31 Score=301.92 Aligned_cols=321 Identities=18% Similarity=0.282 Sum_probs=234.7
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCC---CceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEeCCH
Q 004901 34 WKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (724)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd~~~~~p~~---~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr~y~fqAdSe 110 (724)
...|..-|..+.++.++||.+...+..-+ .+..........+............+.-+.+......+..|+++..++
T Consensus 270 ~~~~~~~~~~~t~~~~~~~~~~~~~~~s~~~~~~~~~~~~~sps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ne 349 (650)
T KOG1450|consen 270 STVWETSTDALTGNPLYYYSDTGSTTWSGHHSPPEKAEIAQSPSLSPAMVSASKNKSTRKNTLWLTTNRTSKVLNRSHNE 349 (650)
T ss_pred CcccccchhhcccccceeecccCcccccCCCCccccccCCCCcccchhhhccccccCCccceeeeeecCCceeeecCCCC
Confidence 44599999999999999999866543222 111111112222222111111111112234444344567899999999
Q ss_pred HHHHHHHHHHHHHHhcCCcchhhccCC------ccccCCC---------------------Cc---cccCc---------
Q 004901 111 EDLYEWKTALELALAQAPSAALVMGHN------GIFRNDT---------------------ND---TIEGS--------- 151 (724)
Q Consensus 111 eE~~eWi~AL~~ai~~ap~~a~~~g~~------~~f~~~~---------------------~~---~~~~~--------- 151 (724)
.....|..++..++...++.+....++ +.-.... +. +..+.
T Consensus 350 t~~~d~~~~~~~~~~~~~~~~s~~s~g~~~~~~P~s~~~~~~~~~~~~~~sp~ss~p~~~~ss~ist~~~~~~~~~~~~~ 429 (650)
T KOG1450|consen 350 TSFEDWSSNLPEVINELPNSASPNSQGDLESTLPESDSPESHTSEPEEDVSPVSSKPLEGLSSPISTTLGPECHEQQDPQ 429 (650)
T ss_pred ccccchhhcchhhhhccCCCCCCCCCCCCCCCCCCCccccccccCcccccCcccccccccccccceecCCcccccccchH
Confidence 999999999999998655533221111 0000000 00 00000
Q ss_pred ------------cccccCCCC-CCCcccccchHHHhhhc-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHH
Q 004901 152 ------------FHQWRDKRP-VKSLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQE 217 (724)
Q Consensus 152 ------------~~~~k~k~~-~~~~vFG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ 217 (724)
....+.++. ....+||++|..+|++. +.||.+|.+|+..|+..|++..||||++|+...|.+|+.+
T Consensus 430 ~~l~~~~s~rp~v~s~~~~g~~k~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~ 509 (650)
T KOG1450|consen 430 KKLTKNFSTRPIVQSSREPGKPKFDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQ 509 (650)
T ss_pred HHHHHhhhccchhhhccccCccccCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHh
Confidence 001122222 23789999999999875 5699999999999999999999999999999999999999
Q ss_pred HhcCC-cCC--CCCCCccchhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHH
Q 004901 218 YEQGK-TEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRIL 294 (724)
Q Consensus 218 ld~g~-~~~--~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll 294 (724)
+|... ..+ ..+.|+|+|+++||.|||+||+||+|..++..|..+........+...+..+| ..||.+|+.||+||+
T Consensus 510 ~d~d~~l~l~~~~~~dihai~galK~ffreLpdpL~p~~l~~~f~~a~~~~~~~~r~~~~~~li-~~lP~~n~~Tlr~lv 588 (650)
T KOG1450|consen 510 SDQDNSLDLADDRWDDIHAITGALKTFFRELPDPLFPKALSKDFTVALQGELSHTRVDKVEELI-GLLPDANYQTLRYLV 588 (650)
T ss_pred cCccccccccccchhHHHHHHHHHHHHHHhcCCcccChhHhHHHHHHhcccchhhHHHHHHHHH-hhCCCcchhHHHHHH
Confidence 99543 333 33479999999999999999999999999999999999998899999999977 599999999999999
Q ss_pred HHHHHhhcccccCCCCccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 004901 295 RMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (724)
Q Consensus 295 ~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~ 373 (724)
.||++|..|+..|||+.+||||||||+|+.+.... ++ .+....++..||+.||+++..+|+
T Consensus 589 ~HL~rv~shs~kNrMs~~NLaIVfgpTl~~~~~~~-----------~~-------~a~~~~~~~~ivq~lle~~~~~f~ 649 (650)
T KOG1450|consen 589 RHLRRVLSHSDKNRMSRHNLAIVFGPTLIKPEQET-----------SS-------EAIHSTYQSQIVQLLLENVSSAFG 649 (650)
T ss_pred HHHHHHHhccccccccccceEEEeccccccccccc-----------cc-------hhhHHhHHHHHHHHHHHhhHhhcc
Confidence 99999999999999999999999999999976321 01 133456688999999999999996
No 40
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=99.97 E-value=8.9e-32 Score=302.26 Aligned_cols=324 Identities=19% Similarity=0.315 Sum_probs=239.5
Q ss_pred CCceEEEeeeeeeccCC--------CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc--eeecc
Q 004901 16 SNTVFKSGPLFISSKGI--------GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVRE 85 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~--------~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~s--v~~~~ 85 (724)
++.+...|+||..-... .+.--.++||||.|+.|+||.+.....|.+ .|.+..... +.+.+
T Consensus 489 s~s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~---------lI~~~Eivclav~~pd 559 (1186)
T KOG1117|consen 489 SQSTFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNG---------LININEIVCLAVHPPD 559 (1186)
T ss_pred cccccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCc---------eeeccceEEEeecCCC
Confidence 34567779999663211 134468999999999999999988776544 233333211 11122
Q ss_pred ---CCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCcchh--------hc-------------cCCcccc
Q 004901 86 ---DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAAL--------VM-------------GHNGIFR 141 (724)
Q Consensus 86 ---~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~~a~--------~~-------------g~~~~f~ 141 (724)
...++|++..-...+|.|+|.+++.+++..|..+|-++.. |.-+. .. .++++|.
T Consensus 560 ~~pn~~~~f~fE~~l~~er~~~fgle~ad~l~~wt~aiaKhfv--p~~~e~l~a~~~~llg~l~~kd~~~~~~~r~gwfs 637 (1186)
T KOG1117|consen 560 TYPNTGFIFIFEIYLPGERVFLFGLETADALRKWTEAIAKHFV--PLFAENLLAADYDLLGRLFYKDCHALDQARKGWFS 637 (1186)
T ss_pred CCCCcCceeEEEEeecccceEEeecccHHHHHHHHHHHHHhcC--chHHHHhccchhhhhhhhhhcChhhhhhcccccee
Confidence 2235666655556789999999999999999999987652 32111 11 1367776
Q ss_pred CCCCccc--------c---------------CccccccCCCCCCCcccccch----------------------------
Q 004901 142 NDTNDTI--------E---------------GSFHQWRDKRPVKSLVVGRPI---------------------------- 170 (724)
Q Consensus 142 ~~~~~~~--------~---------------~~~~~~k~k~~~~~~vFG~pL---------------------------- 170 (724)
.+.+... + ++..+.-++...--..=|+.|
T Consensus 638 l~gssl~~~~~~~~ve~d~~hlrrlqElsi~s~~~n~~K~~~l~lve~grTLYI~g~~rldft~W~~AIekaa~~~gt~L 717 (1186)
T KOG1117|consen 638 LDGSSLHFCLQMQPVEEDRMHLRRLQELSISSMVQNGEKLDVLVLVEKGRTLYIQGETRLDFTVWHTAIEKAAGTDGTAL 717 (1186)
T ss_pred cCCCeeEEecCCCcCchhHHHHHHHHHHhhhhccCCcccccceEEEeeccEEEEecCCcchHHHHHHHHHHHhcCCcchh
Confidence 5544311 1 111111111111011112222
Q ss_pred HHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCC---CCCCCccchhhhHHHHHhhCCC
Q 004901 171 LLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF---SADEDAHVIGDCVKHVLRELPS 247 (724)
Q Consensus 171 ~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~---~~~~d~h~vA~lLK~fLReLPe 247 (724)
.+.--..+.||.||..||.|+.++|+..|||||++|...++.+|...|-+....+ ..+.-+.+|+++||.|||+|++
T Consensus 718 qeqqLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Flrdldd 797 (1186)
T KOG1117|consen 718 QEQQLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFLRDLDD 797 (1186)
T ss_pred hhhhccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHHHhCCc
Confidence 1111114679999999999999999999999999999999999999998764332 2345788999999999999999
Q ss_pred CCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCCC
Q 004901 248 SPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (724)
Q Consensus 248 PLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~ 327 (724)
||+|.++|..|+++....+.++++..+..+| ..||..||.||+.||.||++|..+++.|+|+++|||+||||+||...-
T Consensus 798 pLft~~~~~~w~eaae~~d~~Er~~rY~~lI-~~lp~VnRaTLkalIgHLy~Vqk~s~~N~mnvhNLAlVFa~sLFqTdg 876 (1186)
T KOG1117|consen 798 PLFTKELYPYWIEAAETQDDKERIKRYGALI-RSLPGVNRATLKALIGHLYRVQKCSEINQMNVHNLALVFAPSLFQTDG 876 (1186)
T ss_pred cccchhhhhhHHHhhhccchHHHHHHHHHHH-hhcccccHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhhhheecCC
Confidence 9999999999999999999999999999977 599999999999999999999999999999999999999999998651
Q ss_pred CCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 328 AGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 328 ~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
. ..+..+|++-||.+|..||.-++
T Consensus 877 q-------------------------dehevnVledLingYvvVF~v~e 900 (1186)
T KOG1117|consen 877 Q-------------------------DEHEVNVLEDLINGYVVVFEVDE 900 (1186)
T ss_pred C-------------------------chhhhhHHHHHhcCceEEEEecH
Confidence 1 12467899999999999998665
No 41
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.97 E-value=4.1e-31 Score=260.58 Aligned_cols=170 Identities=29% Similarity=0.480 Sum_probs=154.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCC--CCCCCccchhhhHHHHHhhCCCCCCChhhHH
Q 004901 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (724)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~--~~~~d~h~vA~lLK~fLReLPePLlp~~l~~ 256 (724)
.||.+|..|+.||+++|+++|||||++|+..+++++++.++.|.... ...+|||++|++||.|||+||+||||.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999987543 6779999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCCCCCCCccccc
Q 004901 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD 336 (724)
Q Consensus 257 ~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~~ed~ 336 (724)
.|+.+....+..+++..++.++ .+||+.|+.+|.+|+.||+.|+.+++.|+|++.|||+||||+|+|++....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~Lp~~~~~~L~~l~~~l~~i~~~~~~n~M~~~nLa~~f~P~l~~~~~~~~------ 154 (174)
T smart00324 82 EFIEAAKVEDETERLRALRELI-SLLPPANRATLRYLLAHLNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEV------ 154 (174)
T ss_pred HHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHhcccCCCCcccH------
Confidence 9999998888889999999966 699999999999999999999999999999999999999999999873211
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 337 FDMNGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 337 ~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
.......+...+|++||+|
T Consensus 155 ------------~~~~~~~~~~~~i~~li~~ 173 (174)
T smart00324 155 ------------ASLKDIRHQNTVVETLIEN 173 (174)
T ss_pred ------------HHHHHHHHHHHHHHHHHhc
Confidence 1234556788999999987
No 42
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=99.97 E-value=3.7e-29 Score=281.21 Aligned_cols=203 Identities=21% Similarity=0.269 Sum_probs=171.9
Q ss_pred CCCCCcccccchHHHhhh----cCCCcHHHHHHHH-HHHh-cCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCcc
Q 004901 159 RPVKSLVVGRPILLALED----IDGGPSFLEKALR-FLEK-FGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAH 232 (724)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~----~~~VP~il~~~i~-~L~~-~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h 232 (724)
......||||++..+-.. .+.||.++..+.. +|+. .|++.|||||+.|...+++.+|++||.|.+......|||
T Consensus 140 ls~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH 219 (577)
T KOG4270|consen 140 LSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSGRLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVH 219 (577)
T ss_pred ccchhhhhcchHHhhhcccccCCCcchhhhHhhhhhhhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHH
Confidence 334568999999766543 3457999998888 6664 889999999999999999999999999964443378999
Q ss_pred chhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCcc
Q 004901 233 VIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPS 312 (724)
Q Consensus 233 ~vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~ 312 (724)
+||++||.|||+||+|++++.+|+.|+.+.+..+.++++..++.++ .+||+.|+.+|+|+|.||+.|+++++.||||++
T Consensus 220 ~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~~~~q~lr~~~-~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~ 298 (577)
T KOG4270|consen 220 CLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENEDEKVQLLRQCL-QKLPPTNYSLLRYLIRFLADVVEKEHVNKMSAR 298 (577)
T ss_pred HHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHHHHHHHHHHHH-HhCCcchHHHHHHHHHHHHHHHHHhhhcccchh
Confidence 9999999999999999999999999999999999999999999855 699999999999999999999999999999999
Q ss_pred chhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcc
Q 004901 313 AVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (724)
Q Consensus 313 NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (724)
||||||||+|+|+... ...++.+....+.+..+|+..|++++..|+....
T Consensus 299 NlAiV~gPNl~~~~~p---------------~~~l~~avqvs~~~~~lie~~l~~~~~~~~g~~~ 348 (577)
T KOG4270|consen 299 NLAIVFGPNLLWMKDP---------------LTALMYAVQVSNFLKGLIEKTLEERDTSFPGELE 348 (577)
T ss_pred hceeEecCCccccCCh---------------HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccc
Confidence 9999999999998731 1233344444455666778888888888887663
No 43
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms]
Probab=99.97 E-value=3.1e-30 Score=282.62 Aligned_cols=211 Identities=24% Similarity=0.352 Sum_probs=173.4
Q ss_pred CCcccccchHHHhhhc-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC---cCCCCCCCccchhhh
Q 004901 162 KSLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK---TEFSADEDAHVIGDC 237 (724)
Q Consensus 162 ~~~vFG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~---~~~~~~~d~h~vA~l 237 (724)
-+.||||||..++++. -.||.+|.+++.||+++|++++||||++|...+|+.|++.++..- ...++....|+||.+
T Consensus 297 d~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdl 376 (674)
T KOG2200|consen 297 DGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRERGLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADL 376 (674)
T ss_pred CCceeecCceeeeccCCCcCcHHHHHHHHHHHHhCccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHH
Confidence 3679999999999874 469999999999999999999999999999999999999988742 123455678999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhh
Q 004901 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (724)
Q Consensus 238 LK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAiv 317 (724)
||.|||+||+||||.++.+.|+.+++.....+++.+++.+|+ .||.+||.+|+.|+.||.+|+.+++.|+||+.|||+|
T Consensus 377 LKqffRdLPePL~t~k~~~aF~~i~~~~pkkqrlqAl~~ail-lLPDeNReaLktLL~FL~~V~an~e~N~MT~~Nlsvc 455 (674)
T KOG2200|consen 377 LKQFFRDLPEPLFTVKYSEAFAQIYQLVPKKQRLQALQLAIL-LLPDENREALKTLLEFLNDVIANEEENQMTLMNLSVC 455 (674)
T ss_pred HHHHHHhCCcccchhhHHHHHHHHHhcCcHHHHHHHHHHHHH-hCCcccHHHHHHHHHHHHHHHHhHhhcccchhhhhhh
Confidence 999999999999999999999999999999999999999888 8999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCC---ccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 318 MAPLLLRPLLAGEC---ELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 318 fgP~Llr~~~~~~~---~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
|||+||........ .+-.-....|-.. + ..+....-+..++..||.+++.+|....
T Consensus 456 mAPsLF~l~~~~~d~spr~~~~k~~~g~p~-~--kel~~a~aaa~~l~~mI~y~k~Lf~VP~ 514 (674)
T KOG2200|consen 456 MAPSLFHLNALKLDSSPRVRQKKSETGKPD-Q--KELNEALAAAQGLAHMIKYQKLLFTVPS 514 (674)
T ss_pred hcchHHhhccCCCCCCccccccccccCCCc-h--HHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 99999976532211 0000000000000 1 0122233356889999999999998755
No 44
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.96 E-value=8.6e-30 Score=261.24 Aligned_cols=142 Identities=18% Similarity=0.288 Sum_probs=128.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHH----HHHHHHHHhcCCcCCCCCCCccchhhhHHHHHhhCCCCCCChhh
Q 004901 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEE----VDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASC 254 (724)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~----v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l 254 (724)
.||.+|.+|++||+++|+.+|||||++|+... ++.+++.+|+|.... ...|+|+||++||.|||+||+||||..+
T Consensus 49 ~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l~~~ld~~~~~~-~~~~~~~va~~LK~fLr~LpePlip~~~ 127 (220)
T cd04380 49 SIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEIRDALDTGSPFN-SPGSAESVAEALLLFLESLPDPIIPYSL 127 (220)
T ss_pred ccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHHhCCCCccCHHH
Confidence 48999999999999999999999999999999 999999999985433 6789999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc-cCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCCC
Q 004901 255 CTALLEAYKIDRKEARISAMRSAILE-TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (724)
Q Consensus 255 ~~~ll~~~~~~~~~~ri~~l~~lIl~-~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~ 327 (724)
|+.|+++... + . ..++. +++ .||+.|+.+|.||+.||++|+.+++.|+|++.|||+||||+|||++.
T Consensus 128 y~~~~~~~~~-~-~---~~~~~-ll~~~LP~~n~~~l~~L~~fL~~v~~~~~~nkM~~~nLA~vF~P~Llr~~~ 195 (220)
T cd04380 128 YERLLEAVAN-N-E---EDKRQ-VIRISLPPVHRNVFVYLCSFLRELLSESADRGLDENTLATIFGRVLLRDPP 195 (220)
T ss_pred HHHHHHHhcC-c-H---HHHHH-HHHhhCCHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHhHHHhcchhccCCc
Confidence 9999998622 2 1 23445 446 89999999999999999999999999999999999999999999884
No 45
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.96 E-value=6.2e-29 Score=242.51 Aligned_cols=168 Identities=31% Similarity=0.529 Sum_probs=151.7
Q ss_pred cHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcC-CCCCCCccchhhhHHHHHhhCCCCCCChhhHHHHH
Q 004901 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FSADEDAHVIGDCVKHVLRELPSSPVPASCCTALL 259 (724)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~-~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~ll 259 (724)
|.+|..|+.||+++|+.++||||++|+...++.+++.++.|... .....|+|++|++||.|||+||+||||.+.|+.|+
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~~ 80 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDIDDLEDYDVHDVASLLKLYLRELPEPLIPFELYDEFI 80 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHcCCCccCCHHHHHHHH
Confidence 88999999999999999999999999999999999999999754 56678999999999999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCCCCCCCccccccCC
Q 004901 260 EAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDM 339 (724)
Q Consensus 260 ~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~~ed~~~~ 339 (724)
.+....+...++..++.++ ..||+.|+.+|.+|+.||++|+.+++.|+|++.|||+||||+||+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~i-~~Lp~~~~~~L~~l~~~l~~v~~~~~~n~M~~~nLa~~f~p~l~~~~~~~---------- 149 (169)
T cd00159 81 ELAKIEDEEERIEALKELL-KSLPPENRDLLKYLLKLLHKISQNSEVNKMTASNLAIVFAPTLLRPPDSD---------- 149 (169)
T ss_pred HHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHccccCCCCCcc----------
Confidence 9998888889999999966 59999999999999999999999999999999999999999999987321
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 340 NGDNSAQLLAAANAANNAQAIIATLLEE 367 (724)
Q Consensus 340 ~~~~s~q~~a~~~~~~~~~~iVe~LIen 367 (724)
............+|++||.|
T Consensus 150 --------~~~~~~~~~~~~~~~~li~~ 169 (169)
T cd00159 150 --------DELLEDIKKLNEIVEFLIEN 169 (169)
T ss_pred --------HHHHHHhHHHHHHHHHHHhC
Confidence 11233455678899999975
No 46
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=99.96 E-value=6.9e-30 Score=288.67 Aligned_cols=184 Identities=21% Similarity=0.382 Sum_probs=162.9
Q ss_pred CCCCcccccchHHHhh-----hcCCCcHHHHHHHHHHH-hcCCCcCCeeecCCCHHHHHHHHHHHhcC-CcCC---CCCC
Q 004901 160 PVKSLVVGRPILLALE-----DIDGGPSFLEKALRFLE-KFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF---SADE 229 (724)
Q Consensus 160 ~~~~~vFG~pL~~ll~-----~~~~VP~il~~~i~~L~-~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~~~~---~~~~ 229 (724)
..++.|||.|+...+. +.-++|.||.+|++||+ .+|++.|||||++|.+..|+.|++.||.+ +.++ ..+.
T Consensus 894 ~~qTgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~ 973 (1112)
T KOG4269|consen 894 VKQTGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEM 973 (1112)
T ss_pred ceeceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccccc
Confidence 3568999987754442 23479999999999999 59999999999999999999999999998 3222 4567
Q ss_pred CccchhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCC
Q 004901 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (724)
Q Consensus 230 d~h~vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkM 309 (724)
|||+|||+||+|||+||+|||+.++|..|.......+...+...|..+|. .||++|+.+|.+|+.||++|+.++.+|||
T Consensus 974 dVn~IaGlLKLYlR~LP~~Ll~de~~~~F~~~i~~~npva~~~~~~~li~-slP~aNl~l~~~LlehL~RI~e~ekvNKM 1052 (1112)
T KOG4269|consen 974 DVNAIAGLLKLYLRELPEPLLTDEMYPLFEEGIALSNPVAKEGCMCDLIS-SLPPANLALFLFLLEHLKRIAEKEKVNKM 1052 (1112)
T ss_pred cHHHHHHHHHHHHHhCCccccchhhhHHHHhhccCCCHHHHHhhHHHHHH-hCCChhHHHHHHHHHHHHHHHhhcccccc
Confidence 99999999999999999999999999999999999998999999999774 89999999999999999999999999999
Q ss_pred CccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 310 t~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
+++||||||+|+|.+|. .+...+|.||+.||.+..
T Consensus 1053 nlrNlciVFsPTLniPs--------------------------------e~~~~li~n~d~if~dv~ 1087 (1112)
T KOG4269|consen 1053 NLRNLCIVFSPTLNIPS--------------------------------EIESKLILNYDHIFTDVM 1087 (1112)
T ss_pred cccceeeeecccccCcH--------------------------------Hhhhhhccchhhhhccch
Confidence 99999999999999986 335567788999998865
No 47
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.95 E-value=5.1e-28 Score=257.29 Aligned_cols=201 Identities=24% Similarity=0.341 Sum_probs=174.6
Q ss_pred CCCCCCCcccccchHHHhhh---cCCCcHHHHHHHHHHHhcC-CCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCC-CCc
Q 004901 157 DKRPVKSLVVGRPILLALED---IDGGPSFLEKALRFLEKFG-TKVEGILRQAADVEEVDRRVQEYEQGKTEFSAD-EDA 231 (724)
Q Consensus 157 ~k~~~~~~vFG~pL~~ll~~---~~~VP~il~~~i~~L~~~G-l~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~-~d~ 231 (724)
.+.++.+..||+||..+.+. +..+|.+|..|+.+|..+| +.+|||||++++...+.++.+.+++|..+.... -|+
T Consensus 245 pr~pl~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle~~~~~ 324 (467)
T KOG4406|consen 245 PRPPLPTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLEVYKDL 324 (467)
T ss_pred CCCCCchhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHHHhccc
Confidence 35677899999999888765 4679999999999999999 999999999999999999999999998555444 459
Q ss_pred cchhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCc
Q 004901 232 HVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTP 311 (724)
Q Consensus 232 h~vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~ 311 (724)
|..|.+||.|||+||+||++.++|..+...... +...+..++++++-.+||+.|+.++++++.||.+|++|+..|+||+
T Consensus 325 h~~avllKtF~R~LpePL~t~~~y~~lt~~~~~-~~~~~s~s~~qli~~~lp~~ny~L~r~i~sfL~~Is~~~~~N~M~~ 403 (467)
T KOG4406|consen 325 HAPAVLLKTFLRSLPEPLLTFRLYESLTGFSNV-DKSLRSSSTDQLIRPTLPEENYSLLRYISSFLVQISDNSKENKMTA 403 (467)
T ss_pred hhhHHHHHHHHhcCCcccchhhhhhhhhccccc-hHHhhhhHHHHHhhccCChhHHHHHHHHHHHHHHHHHhHHHhhhcc
Confidence 999999999999999999999999988776554 3467888899878667999999999999999999999999999999
Q ss_pred cchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcc
Q 004901 312 SAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (724)
Q Consensus 312 ~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (724)
.|||+||||+|+|+..... .....+.++.++++||+||..||..+..
T Consensus 404 sNLa~vfGpnl~w~~~~s~-------------------tl~q~npin~F~~~li~~~~~~f~~~~~ 450 (467)
T KOG4406|consen 404 SNLAVVFGPNLLWAQDESL-------------------TLKQINPINKFTKFLIEHYKKLFTTPEN 450 (467)
T ss_pred ccceeeecccccccccccc-------------------cHHHhccHHHHHHHHHHhhhhccCCCCC
Confidence 9999999999999873211 0233466889999999999999998763
No 48
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.95 E-value=2.1e-28 Score=235.24 Aligned_cols=145 Identities=30% Similarity=0.529 Sum_probs=135.8
Q ss_pred cHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcC--CCCCCCccchhhhHHHHHhhCCCCCCChhhHHHH
Q 004901 181 PSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (724)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~--~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~l 258 (724)
|.+|..|++||+++|+.++||||++|+...++++++.|+.|... ....+|+|+||++||.||++||+||+|.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 88999999999999999999999999999999999999999755 6778999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCC
Q 004901 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (724)
Q Consensus 259 l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~ 326 (724)
+.+....+..+++..++.++ .+||..|+.+|.+|+.||+.|+.+++.|+||+.|||+||||+||+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l-~~lp~~~~~~l~~l~~~l~~v~~~~~~n~m~~~~La~~f~P~l~~~~ 147 (151)
T PF00620_consen 81 IAASKSADEEEQIEAIRSLL-QSLPPSNRSLLKYLIELLSKVSDNSEINKMTAENLAIIFAPSLFRPP 147 (151)
T ss_dssp HHHHTSSSHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTGS
T ss_pred hhhhccchhhHHHHHHHHhh-hccccccceeehhcccchhhhhcccccccCCHHHHHHHHHhHcCCCC
Confidence 99888888899999999965 69999999999999999999999999999999999999999999987
No 49
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]
Probab=99.94 E-value=1.5e-26 Score=251.31 Aligned_cols=205 Identities=21% Similarity=0.382 Sum_probs=168.1
Q ss_pred CCCcccccchHHHhhh-------------cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC-----C
Q 004901 161 VKSLVVGRPILLALED-------------IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-----K 222 (724)
Q Consensus 161 ~~~~vFG~pL~~ll~~-------------~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-----~ 222 (724)
....+||+++...+.. ...||.+|.+|+.||.++|+.+.||||++|+..+|++|++.|+++ +
T Consensus 62 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~ 141 (412)
T KOG2710|consen 62 LDGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGID 141 (412)
T ss_pred cceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCcccccc
Confidence 3455666666544321 235899999999999999999999999999999999999999997 3
Q ss_pred cCCCCCCCccchhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhc
Q 004901 223 TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (724)
Q Consensus 223 ~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~ 302 (724)
...++.+++|+||++||.|||+||+||||.++|+.|+..+......+++..++.++ ..||+.|+.+|.+|+.||+.|+.
T Consensus 142 ~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~kl~~e~e~~~~l~l~~-~llp~~nr~~l~~ll~fL~~~a~ 220 (412)
T KOG2710|consen 142 VNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAKLEPETEQLGVLQLLI-YLLPKCNRDTLEVLLGFLSVVAS 220 (412)
T ss_pred ccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhcCCcHHHHHHHHHHHH-HhcCccchhHHHHHHhhhhhhhc
Confidence 55677889999999999999999999999999999999999998879999999866 49999999999999999999999
Q ss_pred ccccC-----------CCCccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004901 303 HAHEN-----------RMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (724)
Q Consensus 303 ~s~~N-----------kMt~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~I 371 (724)
|+..| +|++.|||+||+|+|+....... +..++.+-. -......+..++.+||+||+.+
T Consensus 221 ~s~d~~~kdg~~~~gnkm~~~nlatIf~P~iL~k~~~~~----~~~s~~~~~------~~s~~~~i~~~~~~~~~N~e~~ 290 (412)
T KOG2710|consen 221 HAEDNIGKDGQEVNGNKMTSENLATIFGPNILYKLKGSH----KELSVTGVA------NESESEAIVNFAQMMIENLEAL 290 (412)
T ss_pred ccccccccccccccCcccchhhhhhhhcchhhhcccCCC----ccccccccc------chhhHHHHHHHHHHhhhhHHHh
Confidence 99998 99999999999999999532111 111111101 0112234668899999999999
Q ss_pred cCCCc
Q 004901 372 FDDES 376 (724)
Q Consensus 372 F~~~~ 376 (724)
|..++
T Consensus 291 f~ip~ 295 (412)
T KOG2710|consen 291 FQIPP 295 (412)
T ss_pred hcCCc
Confidence 99443
No 50
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.93 E-value=3.2e-26 Score=253.88 Aligned_cols=241 Identities=19% Similarity=0.192 Sum_probs=213.1
Q ss_pred CCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccchhhhH
Q 004901 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (724)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (724)
.+.+..+||.||..+|.+.+ +|..+.+++-+|...|.-++||||..++...++.|++.+++|..+-.....++++|.++
T Consensus 76 ~~~~~~Lfg~pl~nic~~~~-lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~v~l~~~~i~v~a~v~ 154 (741)
T KOG4724|consen 76 NTADSFLFGWPLTNICVHFR-LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVDVGLKSGEIVVDAAVD 154 (741)
T ss_pred CCCCccccCccchhhcccCC-CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhcccccccccccceEEeehhh
Confidence 34567899999999999877 99999999999999999999999999999999999999999976666778999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhc
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (724)
|.|||.+|..+|...+|+.|+-.....+.+++|..|+++ ..+||..|..+|++|+..| .|..++..|.|+..|||+|+
T Consensus 155 kdflr~ip~~~lSsdl~~hw~~~~~~~~~e~~i~~i~r~-~d~Lpr~n~~lL~~l~~vl-~i~~~S~~n~m~~~nla~cv 232 (741)
T KOG4724|consen 155 KDFLRTIPQLTLSSDLNSHWQLQGPENVYEAIISEIERQ-GDRLPRSNKQLLDTLPIVL-CILILSTINSMSGPNLAQCV 232 (741)
T ss_pred hchhhhchhhhhccccHHHHhhccccccHHHHHHHHHHH-HhhCCchHHHHHHHhHHHH-HHHHhhhhccccCccHHHHh
Confidence 999999999999999999999999999999999999994 4799999999999999999 89999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCCCCCCCCCCCCCCCCCCc
Q 004901 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESLHRCSISADSHVDNSGSEDSSD 398 (724)
Q Consensus 319 gP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~~~~~s~s~~~~~~~s~~e~ssd 398 (724)
+|+++++......+.+.++ .+++.-+++|||+||-.||++++.. ++..++..+...|+.+|
T Consensus 233 ~p~~l~~~~~~s~e~~k~l----------------n~kv~~l~~flI~nclrifGe~i~~---~fr~~s~~s~~~e~~sd 293 (741)
T KOG4724|consen 233 NPIKLKVLTRTSSEFGKGL----------------NGKVPPLPIFLIVNCLRIFGEDIEG---IFRKSSKQSTFKELKSD 293 (741)
T ss_pred cchhcccccccChhhhccc----------------cCCCCCceeeehhhhHHhhcccccc---eeecccccccchhhhhh
Confidence 9999999865444333322 2345678999999999999999965 45556666777888888
Q ss_pred ccccccCCCCCCCCCCCCCCCCCC
Q 004901 399 EENLDMKNNGYHDAQNEVDPESDD 422 (724)
Q Consensus 399 ~~~~~~~d~s~~s~e~e~~~~~d~ 422 (724)
-+.++. |+.||+.+++++...|-
T Consensus 294 ~s~~q~-Ds~yds~~~~~~~~~~~ 316 (741)
T KOG4724|consen 294 LSKGQV-DSHYDSTHVLASILKEY 316 (741)
T ss_pred hccccc-cccccccchhhhhhhhh
Confidence 888887 99999999988876654
No 51
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=99.91 E-value=1.5e-24 Score=190.58 Aligned_cols=87 Identities=61% Similarity=0.747 Sum_probs=84.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (724)
Q Consensus 614 ~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~-~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (724)
+||.+.+++|.+|||||.+||+||++|+++|.|||+||++++|++ ++|.+||+++++||+|||+||+||++||++|++|
T Consensus 1 ~rk~~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~~L 80 (88)
T PF14389_consen 1 KRKQALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVLSL 80 (88)
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999999999999999999988 5889999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 004901 693 HHQLNQQR 700 (724)
Q Consensus 693 ~~~l~~~~ 700 (724)
+++|++||
T Consensus 81 ~~~l~~q~ 88 (88)
T PF14389_consen 81 YRQLFQQR 88 (88)
T ss_pred HHHHHhcC
Confidence 99999986
No 52
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=99.90 E-value=3e-24 Score=258.45 Aligned_cols=162 Identities=26% Similarity=0.430 Sum_probs=149.7
Q ss_pred ccccchHHHhh-hcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-cCCCCCCCccchhhhHHHHH
Q 004901 165 VVGRPILLALE-DIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCVKHVL 242 (724)
Q Consensus 165 vFG~pL~~ll~-~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lLK~fL 242 (724)
+||..|..++. ....||.++.+|+.||+.+|+.++||||++|...+++.|...|+.|. .+.....|+|+++++||.||
T Consensus 602 ~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~dih~vtsVlK~yL 681 (918)
T KOG1453|consen 602 LFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTPDIHAVTSVLKLYL 681 (918)
T ss_pred cccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCCChHHHHHHHHHHH
Confidence 99999999987 56789999999999999999999999999999999999999999986 55567889999999999999
Q ss_pred hhCCCCCCChhhHHHHHHHHhcCCHH------HHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhh
Q 004901 243 RELPSSPVPASCCTALLEAYKIDRKE------ARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAA 316 (724)
Q Consensus 243 ReLPePLlp~~l~~~ll~~~~~~~~~------~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAi 316 (724)
|+||+|||++.+|+.|+.+.+..... +++..+..++ ..||+.|+.+|++|+.||.+|+.++..|+|++.|||+
T Consensus 682 r~Lp~pIi~f~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~LP~~~~~vl~~li~Hl~RV~~~~~~NrM~~~nlai 760 (918)
T KOG1453|consen 682 RKLPEPIIIFNLYDEFLSAAKLPEKDEPSRSTEPLRKLKEVL-EQLPRAHYEVLRRLIAHLKRVARYEDVNRMTPKNLAI 760 (918)
T ss_pred HhccccccccchHHHHHhhhccccccccccccccchhHHHHH-HhcCHhHHHHHHHHHHHHHHHHHhhHhhcCCCCCccc
Confidence 99999999999999999998873333 3888888844 6999999999999999999999999999999999999
Q ss_pred hccccccCCCC
Q 004901 317 CMAPLLLRPLL 327 (724)
Q Consensus 317 vfgP~Llr~~~ 327 (724)
||||+|||++.
T Consensus 761 vF~Ptllr~~d 771 (918)
T KOG1453|consen 761 VFAPTLLRPPD 771 (918)
T ss_pred cccCcccCCCC
Confidence 99999999984
No 53
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=99.89 E-value=1e-22 Score=218.75 Aligned_cols=182 Identities=22% Similarity=0.344 Sum_probs=152.4
Q ss_pred CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-CCCCCCCccchhhhHHHHHhhCCCCCCChhhHH
Q 004901 178 DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVIGDCVKHVLRELPSSPVPASCCT 256 (724)
Q Consensus 178 ~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~ 256 (724)
.-||.+|..|+..|+.+|+..+||||++|....+++|++.|-+|+. ......|+|+||++||+|||+|.+||||..+..
T Consensus 360 PMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt~p~~g~~Dihvic~~lKdFLR~LkePLip~~~~r 439 (604)
T KOG3564|consen 360 PMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKTTPHLGNDDIHVICCCLKDFLRNLKEPLIPFRLRR 439 (604)
T ss_pred ccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCCCCccCCcchhHHHHHHHHHHHhcccccccchHHH
Confidence 4589999999999999999999999999999999999999999974 445668999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCCCCCCCccccc
Q 004901 257 ALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDD 336 (724)
Q Consensus 257 ~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~~ed~ 336 (724)
+|+++....+...-+.++-..|. .||..|+.+|.|||-|+++||+ +..|+|+..|||.+|||+++.-+..++ +
T Consensus 440 df~eAa~~tD~dn~~~aly~aV~-ELpQAnRDTLAfLmiH~qrIAQ-sp~~kM~v~nlA~ifgPtivgh~vp~p----d- 512 (604)
T KOG3564|consen 440 DFMEAAEITDEDNSILALYQAVG-ELPQANRDTLAFLMIHWQRIAQ-SPRVKMNVANLARIFGPTIVGHAVPNP----D- 512 (604)
T ss_pred HHHHHhcCCCchhHHHHHHHHHH-hhhhcchhHHHHHHHHHHHHHh-CCcccccHHHHHHHhcchhhccCCCCc----c-
Confidence 99999999888888888887675 8999999999999999999988 789999999999999999998663321 1
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHHHHHH----HhcccccCCCc
Q 004901 337 FDMNGDNSAQLLAAANAANNAQAIIATLL----EEYENIFDDES 376 (724)
Q Consensus 337 ~~~~~~~s~q~~a~~~~~~~~~~iVe~LI----en~~~IF~~~~ 376 (724)
..++.........+|+.|+ ++|.++...++
T Consensus 513 ----------~~~~l~dv~~q~rvmkaLlelp~~yWsqfl~v~~ 546 (604)
T KOG3564|consen 513 ----------QVTMLQDVKTQPRVMKALLELPLEYWSQFLGVEP 546 (604)
T ss_pred ----------HhHHHHhhhhhHHHHHHHHhCCHHHHHHhhcccc
Confidence 1223344445556666665 45555544443
No 54
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=99.75 E-value=4.7e-18 Score=175.37 Aligned_cols=164 Identities=21% Similarity=0.271 Sum_probs=138.9
Q ss_pred CcccccchHHHhhhc-CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCC--C--CCCCccchhhh
Q 004901 163 SLVVGRPILLALEDI-DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEF--S--ADEDAHVIGDC 237 (724)
Q Consensus 163 ~~vFG~pL~~ll~~~-~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~--~--~~~d~h~vA~l 237 (724)
..+||.+|+.++++. ..-|+++.+|+..|+++|++.-|+|+++|++.+-+.|+..|+.....+ - ...|.++|+|+
T Consensus 182 rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~ 261 (442)
T KOG1452|consen 182 RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGD 261 (442)
T ss_pred ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecc
Confidence 349999999999875 467889999999999999999999999999999999999998854222 1 23588899999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhc---CCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccch
Q 004901 238 VKHVLRELPSSPVPASCCTALLEAYKI---DRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (724)
Q Consensus 238 LK~fLReLPePLlp~~l~~~ll~~~~~---~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NL 314 (724)
+|.||||||+||++..+|...+++... .+.+.-...+-. |+..||..++.+|..++.||..|..+++.|+||+..|
T Consensus 262 ~kD~lrElpEPl~t~~~f~m~~dA~sV~LP~dp~~N~kl~l~-iidcL~r~~~~~l~~~LDHLS~Vl~sS~~N~lt~~~L 340 (442)
T KOG1452|consen 262 SKDELRELPEPLVTGQDFEMDFDAASVALPFDPHLNLKLFLA-IIDCLERELSKQLNVCLDHLSTVLCSSPHNGLTPTRL 340 (442)
T ss_pred cHhHHHhCCCccccchhhhhhhhhhhhcCCCCccccHHHHHH-HHHHHHHHhhhhHhHHHhhhhHheecCCcCCcCHHHH
Confidence 999999999999999999888887542 222333344444 5578999999999999999999999999999999999
Q ss_pred hhhccccccCCCC
Q 004901 315 AACMAPLLLRPLL 327 (724)
Q Consensus 315 AivfgP~Llr~~~ 327 (724)
|.||||.||....
T Consensus 341 s~i~~P~L~~~~~ 353 (442)
T KOG1452|consen 341 SLIFAPLLFFCLD 353 (442)
T ss_pred HHHhhhhHHHhhc
Confidence 9999999987653
No 55
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms]
Probab=99.72 E-value=5.3e-18 Score=194.07 Aligned_cols=161 Identities=23% Similarity=0.398 Sum_probs=147.1
Q ss_pred CCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC-CcCC-CCCCCccchhhhHH
Q 004901 162 KSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEF-SADEDAHVIGDCVK 239 (724)
Q Consensus 162 ~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~~~~-~~~~d~h~vA~lLK 239 (724)
....||.||..+......+|.++.+|+.||+..|+.+|||||++|+......++.+|.+. +.++ ..+..+|++|+.+|
T Consensus 914 ~s~~~~~~l~~~~t~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s~d~~v~~vagAlk 993 (1100)
T KOG4271|consen 914 ESNYFLTPLQDAVTSEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSSMDTTVNVVAGALK 993 (1100)
T ss_pred hhhccCCcccccccCCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccccccccccccCcch
Confidence 356899999888877789999999999999999999999999999999999999999873 3332 23567999999999
Q ss_pred HHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhcc
Q 004901 240 HVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMA 319 (724)
Q Consensus 240 ~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfg 319 (724)
.||..||+||+|+.+...|.+++.+.+...++..++..+ ..||+.|+.+++|++.||.+|+....+|.||..||.|||+
T Consensus 994 sffa~Lpeplipys~h~~~~e~~kI~D~~rklhglr~~~-a~l~~~n~dvfry~ithL~kvs~~~k~~l~t~~~~~i~~~ 1072 (1100)
T KOG4271|consen 994 SFFACLPEPLIPYSYHPRLKEAMKISDRGRKLHGLREAS-AKLHPSNQDVFRYVITHLNKVSCSPKTNLMTNNNLSICFP 1072 (1100)
T ss_pred hhhhhCCCcccCccCCcchhhhhhcccchhhccchhhHh-hhcCchHHHHHHHHHHHHhhhccccccccccccccccccc
Confidence 999999999999999999999999999999999999855 6999999999999999999999999999999999999999
Q ss_pred cccc
Q 004901 320 PLLL 323 (724)
Q Consensus 320 P~Ll 323 (724)
|.|+
T Consensus 1073 ~~~~ 1076 (1100)
T KOG4271|consen 1073 TLLM 1076 (1100)
T ss_pred chHH
Confidence 8776
No 56
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=99.67 E-value=4.1e-16 Score=140.79 Aligned_cols=92 Identities=18% Similarity=0.320 Sum_probs=70.2
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-----CCcceEEE
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-----DKKLLTVL 93 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~-----~Kk~~fvi 93 (724)
|+|+|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.+.|+|..+....... .++++|.|
T Consensus 2 v~k~G~L~--Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~---------~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I 70 (100)
T cd01233 2 VSKKGYLN--FPEETNSGWTRRFVVVRRPYLHIYRSDKDPV---------ERGVINLSTARVEHSEDQAAMVKGPNTFAV 70 (100)
T ss_pred cceeEEEE--eeCCCCCCcEEEEEEEECCEEEEEccCCCcc---------EeeEEEecccEEEEccchhhhcCCCcEEEE
Confidence 68999555 7888889999999999999999999987655 44556666432211111 24567766
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
.. ..|+|+|+|+|++|+++||.+|+..+
T Consensus 71 ~t---~~rt~~~~A~s~~e~~~Wi~ai~~~~ 98 (100)
T cd01233 71 CT---KHRGYLFQALSDKEMIDWLYALNPLY 98 (100)
T ss_pred EC---CCCEEEEEcCCHHHHHHHHHHhhhhh
Confidence 43 27999999999999999999998765
No 57
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=99.66 E-value=5.5e-16 Score=140.77 Aligned_cols=91 Identities=29% Similarity=0.482 Sum_probs=66.1
Q ss_pred EEeeeeeeccCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCc---cee----e--ccCCcce
Q 004901 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSG---SVV----V--REDKKLL 90 (724)
Q Consensus 21 KeG~L~l~Kkg~~-~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~---sv~----~--~~~Kk~~ 90 (724)
|+| |+.|+|+. .++|++|||||+++.|+||+++.+..|.| .|+|..+. .|. . .....++
T Consensus 1 KeG--~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G---------~I~L~~~~~~~~v~~~~~~~~~~~~~~~ 69 (103)
T cd01251 1 KEG--FMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAKG---------EVFLGSQEDGYEVREGLPPGTQGNHWYG 69 (103)
T ss_pred Cce--eEEecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcCc---------EEEeeccccceeEeccCCccccccccce
Confidence 689 55588875 69999999999999999999988766443 33333221 110 0 1112235
Q ss_pred EEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 91 fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
|.|... +|+|+|+|+|++|+.+||.||+.++.
T Consensus 70 F~i~t~---~Rty~l~a~s~~e~~~Wi~ai~~v~~ 101 (103)
T cd01251 70 VTLVTP---ERKFLFACETEQDRREWIAAFQNVLS 101 (103)
T ss_pred EEEEeC---CeEEEEECCCHHHHHHHHHHHHHHhc
Confidence 655432 79999999999999999999999986
No 58
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.65 E-value=7.6e-16 Score=156.01 Aligned_cols=185 Identities=16% Similarity=0.197 Sum_probs=143.3
Q ss_pred cccccchHHHhhh-cCCCcHHHHHHH--HHHHhcCCCc--CCeeecCCCHHHHHHHHHHHhcCCcC--CCCCCCcc----
Q 004901 164 LVVGRPILLALED-IDGGPSFLEKAL--RFLEKFGTKV--EGILRQAADVEEVDRRVQEYEQGKTE--FSADEDAH---- 232 (724)
Q Consensus 164 ~vFG~pL~~ll~~-~~~VP~il~~~i--~~L~~~Gl~~--EGIFR~sg~~~~v~~L~~~ld~g~~~--~~~~~d~h---- 232 (724)
.+||+|+.+-+.+ +...|..+.... +++..+.++. -|+||.++...-+...++.++..... .......+
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 4899988555444 445677776555 5555555444 69999998888888888888765311 11111112
Q ss_pred -------chhhhHHHHHhhCCCCCCChhhHHHHHHHHh---cCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhc
Q 004901 233 -------VIGDCVKHVLRELPSSPVPASCCTALLEAYK---IDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISS 302 (724)
Q Consensus 233 -------~vA~lLK~fLReLPePLlp~~l~~~ll~~~~---~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~ 302 (724)
+||.+++.||++||+||+|..+|+.|+.++. ....+..+.+++.+++ .||++||..|+.|+.||+.|+.
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~~ll~~~~~e~aleAlQl~~l-LLP~enRe~Lq~LL~fl~~va~ 178 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGILELLGNGKEEVALEALQLCLL-LLPPASRRELRRLLRFMARAAK 178 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHHHHhcCccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999999999999998888877 3347889999998776 9999999999999999999999
Q ss_pred cc-------ccCCCCccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 004901 303 HA-------HENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (724)
Q Consensus 303 ~s-------~~NkMt~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~ 375 (724)
+. ..|+| |++..|+|++++++.- . ..+...+|.|||+|+..||.-.
T Consensus 179 ~~~~~L~~~~~nR~---~v~~~Fs~~ii~~~~l-----~-------------------~~~~~~LV~Fmmd~~~~ifkvP 231 (235)
T cd04405 179 NDMPRLHKEIENRM---LVKQTFSRAILCSKDL-----D-------------------EGLADLLVLFLMDHHQDIFKVP 231 (235)
T ss_pred cCccccccccchHH---HHHHHhhhHhcCcccc-----C-------------------HHHHHHHHHHHHHcchhhhcCC
Confidence 84 26777 8999999999998721 1 1235689999999999999864
Q ss_pred c
Q 004901 376 S 376 (724)
Q Consensus 376 ~ 376 (724)
.
T Consensus 232 ~ 232 (235)
T cd04405 232 G 232 (235)
T ss_pred c
Confidence 4
No 59
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.63 E-value=1.3e-15 Score=137.26 Aligned_cols=91 Identities=27% Similarity=0.405 Sum_probs=71.9
Q ss_pred EEeeeeeeccCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------CcceE
Q 004901 21 KSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------KKLLT 91 (724)
Q Consensus 21 KeG~L~l~Kkg~---~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~------Kk~~f 91 (724)
.+| |+.|+|+ .+|+|++|||+|+++.|+|||+.....|. .+.|+|+.+.+|....+ ++++|
T Consensus 2 ~~G--~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~--------~g~IdL~~~~sVk~~~~~~~~~~~~~~F 71 (101)
T cd01264 2 IEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPD--------DCSIDLSKIRSVKAVAKKRRDRSLPKAF 71 (101)
T ss_pred cce--EEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCC--------CceEEcccceEEeeccccccccccCcEE
Confidence 479 7778887 79999999999999999999988665421 25688888877655432 23688
Q ss_pred EEEecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 92 vit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
.+... .|+|||+|+|++++++||++|+.|+
T Consensus 72 ei~tp---~rt~~l~A~se~e~e~WI~~i~~a~ 101 (101)
T cd01264 72 EIFTA---DKTYILKAKDEKNAEEWLQCLNIAV 101 (101)
T ss_pred EEEcC---CceEEEEeCCHHHHHHHHHHHHhhC
Confidence 76542 6999999999999999999998763
No 60
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=99.60 E-value=5.9e-15 Score=131.84 Aligned_cols=92 Identities=27% Similarity=0.370 Sum_probs=66.6
Q ss_pred EEeeeeeecc-CC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEecC
Q 004901 21 KSGPLFISSK-GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (724)
Q Consensus 21 KeG~L~l~Kk-g~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-~~~Kk~~fvit~~~ 97 (724)
++|||+++.+ ++ ..+.|++|||||+++.|+||+++.+..+ .+.|.|..+..... ...++++|.|..
T Consensus 2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~---------~~~I~L~~~~v~~~~~~~k~~~F~I~~-- 70 (96)
T cd01260 2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKA---------EGLIFLSGFTIESAKEVKKKYAFKVCH-- 70 (96)
T ss_pred ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCcc---------ceEEEccCCEEEEchhcCCceEEEECC--
Confidence 6898875533 22 4679999999999999999999877653 23345544332212 234567777753
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 98 ~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
++.++|+|+|+|++++++||.+|+.|
T Consensus 71 ~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 71 PVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 34599999999999999999999864
No 61
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.59 E-value=7.5e-15 Score=131.42 Aligned_cols=88 Identities=23% Similarity=0.379 Sum_probs=65.5
Q ss_pred EeeeeeeccCC--CCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecC
Q 004901 22 SGPLFISSKGI--GWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (724)
Q Consensus 22 eG~L~l~Kkg~--~~k~WKKRWFVL~~--~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (724)
+|||+ |.|. ..++|++|||||++ +.|+||+++.+.. +++.|+|..+..+.....++..|.|..
T Consensus 2 ~GyL~--K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~---------p~G~I~L~~~~~~~~~~~~~~~F~i~t-- 68 (95)
T cd01265 2 CGYLH--KIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAK---------PLGRVDLSGAAFTYDPREEKGRFEIHS-- 68 (95)
T ss_pred cccEE--EecCCCCCcCceeEEEEEcCCCcEEEEECCCCccc---------ccceEECCccEEEcCCCCCCCEEEEEc--
Confidence 59666 5543 48999999999984 5899999987765 556677776544333333355665543
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 98 ~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
.+|+|+|+|+|++|+++||.+|+.+
T Consensus 69 -~~r~y~l~A~s~~e~~~Wi~al~~~ 93 (95)
T cd01265 69 -NNEVIALKASSDKQMNYWLQALQSK 93 (95)
T ss_pred -CCcEEEEECCCHHHHHHHHHHHHhh
Confidence 2799999999999999999999865
No 62
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=99.58 E-value=6.4e-15 Score=134.49 Aligned_cols=94 Identities=23% Similarity=0.260 Sum_probs=66.5
Q ss_pred EEEeeeeeeccC---CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---c------CC
Q 004901 20 FKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---E------DK 87 (724)
Q Consensus 20 ~KeG~L~l~Kkg---~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~---~------~K 87 (724)
+|+||||++.+| .++++|++|||||+++.|+||+++.+... . +.|.|+|..+..+... . .+
T Consensus 1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~--~-----~kG~I~L~~~~~ve~~~~~~~~~~~~~~ 73 (106)
T cd01238 1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRG--S-----KKGSIDLSKIKCVETVKPEKNPPIPERF 73 (106)
T ss_pred CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCccccc--C-----cceeEECCcceEEEEecCCcCccccccc
Confidence 589988865333 23569999999999999999999765310 1 3445666655443211 1 23
Q ss_pred cceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
+++|.|.+. +++|||+|+|++|+++||.+|+.+
T Consensus 74 ~~~F~i~t~---~r~~yl~A~s~~er~~WI~ai~~~ 106 (106)
T cd01238 74 KYPFQVVHD---EGTLYVFAPTEELRKRWIKALKQV 106 (106)
T ss_pred CccEEEEeC---CCeEEEEcCCHHHHHHHHHHHHhC
Confidence 566766543 689999999999999999999863
No 63
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=99.55 E-value=2.2e-14 Score=128.92 Aligned_cols=89 Identities=27% Similarity=0.520 Sum_probs=64.9
Q ss_pred EeeeeeeccCCCCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---------cCCcce
Q 004901 22 SGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---------EDKKLL 90 (724)
Q Consensus 22 eG~L~l~Kkg~~~k~WKKRWFVL~~--~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~---------~~Kk~~ 90 (724)
+|||+ |+|...+.|++|||||.+ +.|+||+++.+..|. +.|+|..+..+... ....++
T Consensus 2 ~G~L~--K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~---------g~I~L~~~~~v~~~~~~~~~~~~~~~~~~ 70 (101)
T cd01235 2 EGYLY--KRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEK---------GCIDLAEVKSVNLAQPGMGAPKHTSRKGF 70 (101)
T ss_pred eEEEE--EcCCCCCCccceEEEEECCCCEEEEecCCCCCccc---------eEEEcceeEEEeecCCCCCCCCCCCCceE
Confidence 79554 888889999999999994 499999998776533 34555544332211 123345
Q ss_pred EEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 91 fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
|.+.. ..|+|+|+|++++|+.+|+.+|+.+|
T Consensus 71 f~i~t---~~r~~~~~a~s~~e~~~Wi~ai~~~i 101 (101)
T cd01235 71 FDLKT---SKRTYNFLAENINEAQRWKEKIQQCI 101 (101)
T ss_pred EEEEe---CCceEEEECCCHHHHHHHHHHHHhhC
Confidence 55543 37999999999999999999999764
No 64
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.55 E-value=2.2e-14 Score=144.01 Aligned_cols=145 Identities=12% Similarity=0.156 Sum_probs=120.5
Q ss_pred cHHHHHHHHHHHhcCCCcCCe---eecCCCHHHHHHHHH-HHhcCC--cCC-------CCCCCccchhhhHHHHHhhCCC
Q 004901 181 PSFLEKALRFLEKFGTKVEGI---LRQAADVEEVDRRVQ-EYEQGK--TEF-------SADEDAHVIGDCVKHVLRELPS 247 (724)
Q Consensus 181 P~il~~~i~~L~~~Gl~~EGI---FR~sg~~~~v~~L~~-~ld~g~--~~~-------~~~~d~h~vA~lLK~fLReLPe 247 (724)
=.+|..|.+.|+.+|+++++| ||..++...++.+.. .|+.+. ... ....|||+++++||.|||.||.
T Consensus 7 ~~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~ 86 (198)
T cd04401 7 KGLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPG 86 (198)
T ss_pred HHHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCC
Confidence 347889999999999999999 999999999998855 556542 111 2336999999999999999999
Q ss_pred CCCCh-hhHHHHHHHHhcCCHHHHHHHHHHHHHccC-ChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCC
Q 004901 248 SPVPA-SCCTALLEAYKIDRKEARISAMRSAILETF-PEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRP 325 (724)
Q Consensus 248 PLlp~-~l~~~ll~~~~~~~~~~ri~~l~~lIl~~L-P~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~ 325 (724)
++++. +.|..|...-+..+ ....+++.+|-..+ |+.|+.++..++.+|..|+.|+..|+|+..+|+.+|||.+|..
T Consensus 87 ~~v~~~~~Y~~F~~~E~~~~--~p~~aF~~~l~~~~~~~a~~~il~~ffdlL~~Iaa~s~~N~ms~~kLs~~fg~waF~~ 164 (198)
T cd04401 87 SKVIWWEVYEEFKARERRSN--YPADAFLDLLPQCLSSPAHASILYDFFDLLSSIAAHSSVNGMSGRKLSKMAGPWAFGK 164 (198)
T ss_pred CccCCHHHHHHHHHHHHhcC--CcHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHhcCccCCcHhHHHHHhhHHHcCC
Confidence 99999 99999999644332 22337777664334 7889999999999999999999999999999999999999998
Q ss_pred CC
Q 004901 326 LL 327 (724)
Q Consensus 326 ~~ 327 (724)
+.
T Consensus 165 ~~ 166 (198)
T cd04401 165 PT 166 (198)
T ss_pred CC
Confidence 74
No 65
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=99.55 E-value=2.4e-14 Score=127.19 Aligned_cols=89 Identities=20% Similarity=0.316 Sum_probs=67.9
Q ss_pred EeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCc
Q 004901 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR 101 (724)
Q Consensus 22 eG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr 101 (724)
+| |+.|+|...++|++|||||+++.|.||+++.+..+ + +.+.|+|..+..+.. ..++..|.|... .++
T Consensus 2 ~G--~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~--~-----~~G~I~L~~~~i~~~-~~~~~~F~i~~~--~~r 69 (91)
T cd01247 2 NG--VLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSH--G-----CRGSIFLKKAIIAAH-EFDENRFDISVN--ENV 69 (91)
T ss_pred ce--EEEEeccccCCCceEEEEEECCEEEEEecCccCcC--C-----CcEEEECcccEEEcC-CCCCCEEEEEeC--CCe
Confidence 69 55599999999999999999999999999876432 1 345566666544322 334566776432 259
Q ss_pred eEEEEeCCHHHHHHHHHHHHH
Q 004901 102 AFTLKAETSEDLYEWKTALEL 122 (724)
Q Consensus 102 ~y~fqAdSeeE~~eWi~AL~~ 122 (724)
+|+|.|++++|+++|+.||++
T Consensus 70 ~~~L~A~s~~e~~~Wi~al~~ 90 (91)
T cd01247 70 VWYLRAENSQSRLLWMDSVVR 90 (91)
T ss_pred EEEEEeCCHHHHHHHHHHHhh
Confidence 999999999999999999974
No 66
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.55 E-value=3.6e-14 Score=133.22 Aligned_cols=99 Identities=27% Similarity=0.491 Sum_probs=72.1
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEecCC
Q 004901 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDGR 98 (724)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-~~~Kk~~fvit~~~~ 98 (724)
.|+|||+ |+|+..+.|++|||||.++.|+||+++.+.. +.+.|.|..+..... ...++++|.|.....
T Consensus 1 ~k~G~L~--K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~---------~~g~I~L~~~~v~~~~~~~~~~~F~i~~~~~ 69 (125)
T cd01252 1 DREGWLL--KQGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENVSIREVEDPSKPFCFELFSPSD 69 (125)
T ss_pred CcEEEEE--EeCCCCCCeEeEEEEEECCEEEEEcCCCCCC---------ceEEEECCCcEEEEcccCCCCeeEEEECCcc
Confidence 3789665 7887789999999999999999999977654 344556654332211 234566676543221
Q ss_pred ------------------CCceEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 99 ------------------DGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 99 ------------------~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
..++|+|+|+|++|+.+|+.+|+.++...|.
T Consensus 70 ~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~~~~~ 118 (125)
T cd01252 70 KQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIKSIKASISPNPF 118 (125)
T ss_pred ccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCch
Confidence 2368999999999999999999999975543
No 67
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.52 E-value=4.5e-14 Score=128.18 Aligned_cols=89 Identities=30% Similarity=0.531 Sum_probs=64.5
Q ss_pred EEeeeeeeccC-------CCCCCcEEEEEEEe-CCeEEEEcCCC-CCCCCCCceeeeeeCcEEcCCCcceeecc---CCc
Q 004901 21 KSGPLFISSKG-------IGWKSWKKRWFILT-RTSLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSVVVRE---DKK 88 (724)
Q Consensus 21 KeG~L~l~Kkg-------~~~k~WKKRWFVL~-~~~L~yYKd~~-~~~p~~~~~~~l~L~~I~L~~~~sv~~~~---~Kk 88 (724)
++|||++.--| ..+|+||||||||+ ++.|+||++.. +.. +.+.|+|+.|..|.... .+.
T Consensus 1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~---------p~G~IdL~~~~~V~~~~~~~~~~ 71 (104)
T cd01236 1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTL---------PQGTIDMNQCTDVVDAEARTGQK 71 (104)
T ss_pred CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcc---------cceEEEccceEEEeecccccCCc
Confidence 47977755333 34889999999998 57888887763 444 44567887776654332 233
Q ss_pred ceEEEEecCCCCceEEEEeCCHHHHHHHHHHHH
Q 004901 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALE 121 (724)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~ 121 (724)
++|.|... +|+|||.|+|++|+++|+.+|.
T Consensus 72 ~~f~I~tp---~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 72 FSICILTP---DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred cEEEEECC---CceEEEEeCCHHHHHHHHHHHH
Confidence 56665432 7999999999999999999986
No 68
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.51 E-value=9e-14 Score=126.08 Aligned_cols=97 Identities=21% Similarity=0.342 Sum_probs=69.3
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEe-CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecC
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~-~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (724)
|+|+| |+.|+|...+.|++|||+|+ ++.|+||++++..... ..++++++.+..|........+++.|.|....
T Consensus 1 v~k~G--~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~----~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~ 74 (102)
T cd01241 1 VVKEG--WLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDP----FLPPLNNFSVAECQLMKTERPRPNTFIIRCLQ 74 (102)
T ss_pred CcEEE--EEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCc----cccccCCeEEeeeeeeeccCCCcceEEEEecc
Confidence 57999 55589999999999999999 7889999887643322 23467777776654433334455667765211
Q ss_pred ---CCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 98 ---RDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 98 ---~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
...| +|+|+|++|+++||.||+.+
T Consensus 75 ~~~~~~r--~f~a~s~ee~~eWi~ai~~v 101 (102)
T cd01241 75 WTTVIER--TFHVESPEEREEWIHAIQTV 101 (102)
T ss_pred CCcccCE--EEEeCCHHHHHHHHHHHHhh
Confidence 1234 55799999999999999876
No 69
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=99.48 E-value=1.5e-13 Score=124.17 Aligned_cols=91 Identities=29% Similarity=0.399 Sum_probs=66.9
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--Ccce
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLL 90 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~------~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~--Kk~~ 90 (724)
|+|+|||. |+ +.|+||||||+++ .|.||++++.....+ ..+.+.|.|..|..+....+ ++++
T Consensus 2 v~k~GyL~--K~----K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~----~~p~~vI~L~~c~~v~~~~d~k~~~~ 71 (101)
T cd01257 2 VRKSGYLR--KQ----KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKG----SAPKRVIPLESCFNINKRADAKHRHL 71 (101)
T ss_pred ccEEEEEe--Ee----cCcEeEEEEEecCCCCCCceEEEECChhhccccC----CCceEEEEccceEEEeeccccccCeE
Confidence 78999555 54 7899999999987 799999987532111 11566788888777644322 2356
Q ss_pred EEEEecCCCCceEEEEeCCHHHHHHHHHHHHH
Q 004901 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (724)
Q Consensus 91 fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ 122 (724)
|.|... .++|+|.|+|++|+++|+.+|..
T Consensus 72 f~i~t~---dr~f~l~aese~E~~~Wi~~i~~ 100 (101)
T cd01257 72 IALYTR---DEYFAVAAENEAEQDSWYQALLE 100 (101)
T ss_pred EEEEeC---CceEEEEeCCHHHHHHHHHHHhh
Confidence 655432 58999999999999999999863
No 70
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=99.46 E-value=3.1e-13 Score=123.74 Aligned_cols=88 Identities=18% Similarity=0.209 Sum_probs=61.4
Q ss_pred EeeeeeeccCC----CCCCcEEEEEEEeCCe-------EEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----cc
Q 004901 22 SGPLFISSKGI----GWKSWKKRWFILTRTS-------LVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RE 85 (724)
Q Consensus 22 eG~L~l~Kkg~----~~k~WKKRWFVL~~~~-------L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-----~~ 85 (724)
+| |+.|+|. ..++|++|||||+++. |.||++..+.. +.+.|+|..+..+.. ..
T Consensus 2 eG--wL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k---------~~g~I~L~~~~~v~~~~~~~~~ 70 (108)
T cd01266 2 EG--WLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFK---------LEFVIDLESCSQVDPGLLCTAG 70 (108)
T ss_pred ce--eeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCc---------cceEEECCccEEEccccccccc
Confidence 79 4456665 3459999999999876 59999987765 344566665433211 11
Q ss_pred C--CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 86 D--KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 86 ~--Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
. ..+.|.+.. ..|+|||.|+|++|+++||.+|+++
T Consensus 71 ~~~~~~~f~i~t---~~r~y~l~A~s~ee~~~Wi~~I~~~ 107 (108)
T cd01266 71 NCIFGYGFDIET---IVRDLYLVAKNEEEMTLWVNCICKL 107 (108)
T ss_pred CcccceEEEEEe---CCccEEEEECCHHHHHHHHHHHHhh
Confidence 1 123454432 3699999999999999999999864
No 71
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.42 E-value=7.5e-13 Score=115.90 Aligned_cols=91 Identities=27% Similarity=0.407 Sum_probs=64.8
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCC
Q 004901 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (724)
Q Consensus 21 KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~g 100 (724)
++|||+ |++...+.|++|||+|+++.|+||+++.... .. +.+.|.|..+.. .....++++|.|.. .++
T Consensus 1 ~~G~L~--k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~--~~-----~~~~i~l~~~~~-~~~~~~~~~F~i~~--~~~ 68 (91)
T cd01246 1 VEGWLL--KWTNYLKGWQKRWFVLDNGLLSYYKNKSSMR--GK-----PRGTILLSGAVI-SEDDSDDKCFTIDT--GGD 68 (91)
T ss_pred CeEEEE--EecccCCCceeeEEEEECCEEEEEecCccCC--CC-----ceEEEEeceEEE-EECCCCCcEEEEEc--CCC
Confidence 479555 6666678999999999999999999987651 01 233344444322 22233356666653 346
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHH
Q 004901 101 RAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 101 r~y~fqAdSeeE~~eWi~AL~~a 123 (724)
++|+|+|+|.+|+.+|+.||+.|
T Consensus 69 ~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 69 KTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CEEEEECCCHHHHHHHHHHHHhC
Confidence 99999999999999999999864
No 72
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.41 E-value=9.9e-13 Score=115.83 Aligned_cols=91 Identities=20% Similarity=0.444 Sum_probs=61.7
Q ss_pred EEeeeeeeccCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-CCcceEEEEecCC
Q 004901 21 KSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-DKKLLTVLFPDGR 98 (724)
Q Consensus 21 KeG~L~l~Kkg~~-~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~-~Kk~~fvit~~~~ 98 (724)
|+|||+ |++.. .+.|++|||+|+++.|+||++..... ..+...+.+..+.+... ... .++++|.|...
T Consensus 1 k~G~L~--kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~--~~~~~~i~l~~~~v~~~----~~~~~~~~~f~i~~~-- 70 (94)
T cd01250 1 KQGYLY--KRSSKSNKEWKKRWFVLKNGQLTYHHRLKDYD--NAHVKEIDLRRCTVRHN----GKQPDRRFCFEVISP-- 70 (94)
T ss_pred CcceEE--EECCCcCCCceEEEEEEeCCeEEEEcCCcccc--cccceEEeccceEEecC----ccccCCceEEEEEcC--
Confidence 589766 44433 78899999999999999999987531 11112233333322221 112 25677777543
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHH
Q 004901 99 DGRAFTLKAETSEDLYEWKTALEL 122 (724)
Q Consensus 99 ~gr~y~fqAdSeeE~~eWi~AL~~ 122 (724)
.++|+|+|+|.+++++|+.||+.
T Consensus 71 -~~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 71 -TKTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred -CcEEEEECCCHHHHHHHHHHHhc
Confidence 49999999999999999999974
No 73
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.37 E-value=2.6e-12 Score=115.57 Aligned_cols=76 Identities=22% Similarity=0.232 Sum_probs=55.9
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceEEE-EecCCCCceEEEEeC
Q 004901 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVL-FPDGRDGRAFTLKAE 108 (724)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~----~Kk~~fvi-t~~~~~gr~y~fqAd 108 (724)
.++||+|||+|+++.|+||+++.. . +.+.|+|.....+.... ...++|.| ++ .++|||+|+
T Consensus 18 ~~n~KkRwF~Lt~~~L~Y~k~~~~-~---------~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt~----~r~~yi~a~ 83 (98)
T cd01244 18 VLHFKKRYFQLTTTHLSWAKDVQC-K---------KSALIKLAAIKGTEPLSDKSFVNVDIITIVCE----DDTMQLQFE 83 (98)
T ss_pred CcCCceeEEEECCCEEEEECCCCC-c---------eeeeEEccceEEEEEcCCcccCCCceEEEEeC----CCeEEEECC
Confidence 478999999999999999998653 2 45556666655433221 22345544 44 589999999
Q ss_pred CHHHHHHHHHHHHHH
Q 004901 109 TSEDLYEWKTALELA 123 (724)
Q Consensus 109 SeeE~~eWi~AL~~a 123 (724)
|+.|+++||.||+++
T Consensus 84 s~~E~~~Wi~al~k~ 98 (98)
T cd01244 84 APVEATDWLNALEKQ 98 (98)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999999863
No 74
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.36 E-value=1.9e-12 Score=116.31 Aligned_cols=88 Identities=17% Similarity=0.227 Sum_probs=65.3
Q ss_pred EeeeeeeccCCC-CCCcEEEEEEEeC----CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceEEE
Q 004901 22 SGPLFISSKGIG-WKSWKKRWFILTR----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVL 93 (724)
Q Consensus 22 eG~L~l~Kkg~~-~k~WKKRWFVL~~----~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~---~~Kk~~fvi 93 (724)
.|||. |+|+. .|.||+|||+|.+ +.|+||++..++. +++.|++..+...... ..+++||.+
T Consensus 2 ~G~l~--K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~---------p~gli~l~~~~V~~v~ds~~~r~~cFel 70 (98)
T cd01245 2 KGNLL--KRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTK---------PIGLIDLSDAYLYPVHDSLFGRPNCFQI 70 (98)
T ss_pred CCccc--cCCCCcccccceeEEEEecCCCCceEEEEcCCCCCC---------ccceeeccccEEEEccccccCCCeEEEE
Confidence 58544 77777 9999999999987 8999999998876 4455666665221111 255688887
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHH
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ 122 (724)
.... ...+||++|++ +|+++||.+|+.
T Consensus 71 ~~~~-~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 71 VERA-LPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred ecCC-CCeEEEEeCCH-HHHHHHHHHHhc
Confidence 6431 12689999999 999999999975
No 75
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.35 E-value=3.2e-12 Score=119.15 Aligned_cols=98 Identities=22% Similarity=0.275 Sum_probs=67.6
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee------ccCCcceEEE
Q 004901 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------REDKKLLTVL 93 (724)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~------~~~Kk~~fvi 93 (724)
...|||.+....++.++|++|||||+|+.|+||+.+.+.. .. .+++.|+|..|..... .-.+++.|.+
T Consensus 2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~-~~-----~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i 75 (122)
T cd01263 2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEK-RK-----GPTGLIDLSTCTSSEGASAVRDICARPNTFHL 75 (122)
T ss_pred ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccc-cC-----CceEEEEhhhCcccccccCChhhcCCCCeEEE
Confidence 4569888766656799999999999999999999877632 11 2566677766655322 2234555665
Q ss_pred EecCCC--------------C--c-eEEEEeCCHHHHHHHHHHHHHH
Q 004901 94 FPDGRD--------------G--R-AFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 94 t~~~~~--------------g--r-~y~fqAdSeeE~~eWi~AL~~a 123 (724)
...... . + -|+|.|||.+|+++|+.+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~ 122 (122)
T cd01263 76 DVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST 122 (122)
T ss_pred EEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence 321111 1 1 2679999999999999999753
No 76
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=99.31 E-value=2.4e-11 Score=107.08 Aligned_cols=101 Identities=23% Similarity=0.420 Sum_probs=70.2
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee--eccCCcceEEEEec
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV--VREDKKLLTVLFPD 96 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~--~~~~Kk~~fvit~~ 96 (724)
++++|||+ +++...+.|++|||+|.++.|+||++..... ...+...+++..+.+....... .....+++|.+...
T Consensus 1 ~~~~G~L~--~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~-~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~ 77 (104)
T PF00169_consen 1 CIKEGWLL--KKSSSRKKWKKRYFVLRDSYLLYYKSSKDKS-DSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTP 77 (104)
T ss_dssp EEEEEEEE--EEESSSSSEEEEEEEEETTEEEEESSTTTTT-ESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEET
T ss_pred CEEEEEEE--EECCCCCCeEEEEEEEECCEEEEEecCcccc-ceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeC
Confidence 58999776 4446688899999999999999999987411 1123334444444443322110 11234577777653
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 97 GRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 97 ~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
.+..|+|+|+|++++..|+.+|+.++
T Consensus 78 --~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 78 --NGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp --TSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred --CCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 24699999999999999999999886
No 77
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.30 E-value=1.7e-11 Score=113.67 Aligned_cols=101 Identities=21% Similarity=0.262 Sum_probs=66.9
Q ss_pred EEeeeeee-------ccC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc-eeec-cCCcce
Q 004901 21 KSGPLFIS-------SKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVR-EDKKLL 90 (724)
Q Consensus 21 KeG~L~l~-------Kkg-~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~s-v~~~-~~Kk~~ 90 (724)
|+|+|..+ ||. .+.+.|+++||||+|+.|++|||....... ....-....|.|..+.. +... ..+++.
T Consensus 2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~--~~~~~~~~~Isi~~a~~~ia~dy~Kr~~V 79 (117)
T cd01230 2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKS--LSETELKNAISIHHALATRASDYSKKPHV 79 (117)
T ss_pred CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccc--cccccccceEEeccceeEeeccccCCCcE
Confidence 68877754 111 125789999999999999999998642211 00000123355655542 2222 233344
Q ss_pred EEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 91 fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
|.| ...+++.|+|||.+.+||+.|+.+|+.+++
T Consensus 80 F~L--~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~ 112 (117)
T cd01230 80 FRL--RTADWREFLFQTSSLKELQSWIERINVVAA 112 (117)
T ss_pred EEE--EcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence 544 456789999999999999999999998875
No 78
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.28 E-value=1.6e-11 Score=111.31 Aligned_cols=94 Identities=29% Similarity=0.411 Sum_probs=61.5
Q ss_pred Eeeeeeec------cCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceEEE
Q 004901 22 SGPLFISS------KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTVL 93 (724)
Q Consensus 22 eG~L~l~K------kg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~--~~Kk~~fvi 93 (724)
+|+|..+. +....+.|++|||+|+++.|+||+++........+.+ .|++..+...... ..++++|.+
T Consensus 2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~-----~i~l~~~~i~~~~~~~k~~~~F~l 76 (104)
T cd01253 2 EGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEP-----PVDLTGAQCEVASDYTKKKHVFRL 76 (104)
T ss_pred CceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCC-----cEeccCCEEEecCCcccCceEEEE
Confidence 57666331 2234778999999999999999998764422211111 2333322211111 234466766
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHH
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALEL 122 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ 122 (724)
.. +++++|+|+|+++++++.|+.+|+.
T Consensus 77 ~~--~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 77 RL--PDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred Ee--cCCCEEEEECCCHHHHHHHHHHHhc
Confidence 53 4689999999999999999999974
No 79
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=99.22 E-value=1.8e-11 Score=131.34 Aligned_cols=170 Identities=16% Similarity=0.219 Sum_probs=140.4
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC------------------------------------
Q 004901 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK------------------------------------ 222 (724)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~------------------------------------ 222 (724)
..|.++...+.+.+.+|..++|++|.++.....+.+++.-..|+
T Consensus 70 ~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~~k~~~~~i~Epvvpi~~p~V~r~ 149 (514)
T KOG4370|consen 70 PLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGLIKRFLRQIPEPVVPIEFPSVARS 149 (514)
T ss_pred cCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhHHHHhhhccCCccccccchHHHHH
Confidence 46899999999999999999999999988766655554332211
Q ss_pred -----cCCCCCCCccchhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHH
Q 004901 223 -----TEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMM 297 (724)
Q Consensus 223 -----~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L 297 (724)
......+.|.+||+|||.|||+||+||++.++...|..++.........+.++.++ ..||.+||.++.+|+-|+
T Consensus 150 Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~~h~~~t~~q~efq~ll-k~Lp~cNyll~swl~lH~ 228 (514)
T KOG4370|consen 150 CIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVFLHAQHTMGQNEFQFLL-KILPKCNYLLYSWLNLHK 228 (514)
T ss_pred HhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHHccchhhHHHHHHHHHH-HhccccchHHHHHHHHHH
Confidence 00112457889999999999999999999999999999998887778888888854 799999999999999999
Q ss_pred HHhhcccccCCCCccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcc
Q 004901 298 HTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (724)
Q Consensus 298 ~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (724)
-.|....-.|||+..||+|+..|++--+ +.++..|.-|+..||++..+
T Consensus 229 d~vi~~e~~~Kln~q~i~i~lspt~q~s--------------------------------~r~l~al~~h~q~lf~~v~l 276 (514)
T KOG4370|consen 229 DKVIEEEYCLKLNKQQIFINLSPTEQES--------------------------------KRGLQALGLHLQTLFEMVRL 276 (514)
T ss_pred HHHHHHHHHhhcchhheeeecchHHHHH--------------------------------HHHHHHHHHHHHHHHhhhee
Confidence 9999999999999999999998876532 24577788889999998876
Q ss_pred ccCC
Q 004901 378 HRCS 381 (724)
Q Consensus 378 ~~~s 381 (724)
..|.
T Consensus 277 ~~~~ 280 (514)
T KOG4370|consen 277 MVCF 280 (514)
T ss_pred eeee
Confidence 6654
No 80
>KOG0930 consensus Guanine nucleotide exchange factor Cytohesin, contains PH and Sec7 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=5.5e-11 Score=121.77 Aligned_cols=101 Identities=28% Similarity=0.512 Sum_probs=73.0
Q ss_pred eEEEeeeeeeccCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe-c
Q 004901 19 VFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-D 96 (724)
Q Consensus 19 V~KeG~L~l~Kkg~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~-~ 96 (724)
..++|||+ |.|+ +.++||+|||+|+.++||||.--.+..|.|. ++|....+... ....|++||.+.. .
T Consensus 260 pdREGWLl--Klgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrGI----IpLeNlsir~V----edP~kP~cfEly~ps 329 (395)
T KOG0930|consen 260 PDREGWLL--KLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRGI----IPLENLSIREV----EDPKKPNCFELYIPS 329 (395)
T ss_pred ccccceee--eecCCcccchhheeEEeecceeeeeeeccCCCCCcc----eeccccceeec----cCCCCCCeEEEecCC
Confidence 46899776 4444 7899999999999999999998777775542 24444333332 2245668887643 2
Q ss_pred CC-----------CCc-------eEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 97 GR-----------DGR-------AFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 97 ~~-----------~gr-------~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
.. +|| +|.++|.+.+|+.+||.+|+.+|+..|-
T Consensus 330 ~~gq~IKACKTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is~~Pf 380 (395)
T KOG0930|consen 330 NKGQVIKACKTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAISRDPF 380 (395)
T ss_pred CCcCeeeeecccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhccCcH
Confidence 21 222 6999999999999999999999986664
No 81
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.18 E-value=1.1e-10 Score=105.47 Aligned_cols=91 Identities=22% Similarity=0.396 Sum_probs=68.6
Q ss_pred ccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE-EecCCCCceEEEEe
Q 004901 29 SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-FPDGRDGRAFTLKA 107 (724)
Q Consensus 29 Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi-t~~~~~gr~y~fqA 107 (724)
-+...+++||+|||+|+++.|+|||++.+.. +.+.+.+.+.+|.+.....+ ..+++++.+ +|.....++|+|.|
T Consensus 12 ~~~~~~K~~KrrwF~lk~~~L~YyK~kee~~--~~p~i~lnl~gcev~~dv~~---~~~kf~I~l~~ps~~~~r~y~l~c 86 (106)
T cd01237 12 PKKLTLKGYKQYWFTFRDTSISYYKSKEDSN--GAPIGQLNLKGCEVTPDVNV---AQQKFHIKLLIPTAEGMNEVWLRC 86 (106)
T ss_pred cchhhhhhheeEEEEEeCCEEEEEccchhcC--CCCeEEEecCceEEcccccc---cccceEEEEecCCccCCeEEEEEC
Confidence 3445588899999999999999999987643 55666777778877764332 234555544 44344458999999
Q ss_pred CCHHHHHHHHHHHHHHH
Q 004901 108 ETSEDLYEWKTALELAL 124 (724)
Q Consensus 108 dSeeE~~eWi~AL~~ai 124 (724)
+|++++.+||.|++.|-
T Consensus 87 dsEeqya~Wmaa~rlas 103 (106)
T cd01237 87 DNEKQYAKWMAACRLAS 103 (106)
T ss_pred CCHHHHHHHHHHHHHhh
Confidence 99999999999999763
No 82
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=99.17 E-value=9.6e-11 Score=108.11 Aligned_cols=97 Identities=33% Similarity=0.572 Sum_probs=49.1
Q ss_pred EEeeeeeeccCCC-CCCcEEEEEEEe-CCeEEEEcCCCCCCCCC--C--ceeeeeeCcEEcCCCcc-ee--------ecc
Q 004901 21 KSGPLFISSKGIG-WKSWKKRWFILT-RTSLVFFKNDPSALPQR--G--GEVNLTLGGIDLNNSGS-VV--------VRE 85 (724)
Q Consensus 21 KeG~L~l~Kkg~~-~k~WKKRWFVL~-~~~L~yYKd~~~~~p~~--~--~~~~l~L~~I~L~~~~s-v~--------~~~ 85 (724)
|+|||| |++.. .+.|++|||+|. ++.|.|||.+.+..... + ....+..+.+....... .. ...
T Consensus 1 k~G~l~--K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (112)
T PF15413_consen 1 KEGYLY--KWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEI 78 (112)
T ss_dssp EEEEEE--E--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-
T ss_pred CCceEE--EecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCc
Confidence 689666 77776 899999999999 99999999933221000 0 00000000111110000 00 001
Q ss_pred CCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 86 ~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
..+.+.++++ .++|+|.|+|.+|+.+|+.||+.|
T Consensus 79 ~~~~~~i~T~----~kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 79 HLKVFSIFTP----TKTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SSEEEEEE-S----S-EEEEEESSHHHHHHHHHHHHH-
T ss_pred CCCCcEEECC----CcEEEEEECCHHHHHHHHHHHHhC
Confidence 1122223343 689999999999999999999865
No 83
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=99.11 E-value=5.8e-10 Score=100.98 Aligned_cols=98 Identities=14% Similarity=0.168 Sum_probs=68.3
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEecC
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPDG 97 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-~~~Kk~~fvit~~~ 97 (724)
.+|+| |+.|.+...+.|+.|||+|-++.|.|++...... +.. ....+.|++........ ....++.|.|...
T Consensus 2 ~ikeG--~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~---~~~-y~~~~~i~l~~~~v~~~~~~~~~~~F~I~~~- 74 (101)
T cd01219 2 LLKEG--SVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIG---GSK-FKVRARIDVSGMQVCEGDNLERPHSFLVSGK- 74 (101)
T ss_pred cccce--EEEEEecCCCCceeEEEEEeCCEEEEEEcccccC---CCc-EEEEEEEecccEEEEeCCCCCcCceEEEecC-
Confidence 57999 6668888788999999999999999998643211 111 11223344443222111 1234577877643
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 98 RDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 98 ~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.++|+|+|+|++|+.+|+.+|+.+|.
T Consensus 75 --~rsf~l~A~s~eEk~~W~~ai~~~i~ 100 (101)
T cd01219 75 --QRCLELQARTQKEKNDWVQAIFSIID 100 (101)
T ss_pred --CcEEEEEcCCHHHHHHHHHHHHHHhh
Confidence 49999999999999999999999985
No 84
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=99.07 E-value=7.3e-10 Score=103.64 Aligned_cols=76 Identities=26% Similarity=0.424 Sum_probs=56.4
Q ss_pred CcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--------------cCCcceEEEEecCCCCc
Q 004901 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------------EDKKLLTVLFPDGRDGR 101 (724)
Q Consensus 36 ~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~--------------~~Kk~~fvit~~~~~gr 101 (724)
+|++|||+|+++.|.||+++.++. +++.|.++....+... ..+++.|.|.. ..|
T Consensus 32 ~w~kRWFvlr~s~L~Y~~~~~~~~---------~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t---~~R 99 (121)
T cd01254 32 RWQKRWFIVKESFLAYMDDPSSAQ---------ILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITN---SNR 99 (121)
T ss_pred CCcceeEEEeCCEEEEEcCCCCCc---------eeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEc---CCc
Confidence 699999999999999999988755 3444444443333221 23455666644 279
Q ss_pred eEEEEeCCHHHHHHHHHHHHHH
Q 004901 102 AFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 102 ~y~fqAdSeeE~~eWi~AL~~a 123 (724)
+|.|.|+|+.++.+|+.+|+.|
T Consensus 100 ~~~l~a~s~~~~~~Wi~~i~~a 121 (121)
T cd01254 100 SLKLKCKSSRKLKQWMASIEDA 121 (121)
T ss_pred EEEEEeCCHHHHHHHHHHHHhC
Confidence 9999999999999999999864
No 85
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton]
Probab=99.06 E-value=2.2e-10 Score=133.01 Aligned_cols=146 Identities=22% Similarity=0.294 Sum_probs=129.3
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeee-cCCCHHHHHHHHHHHhcCCcCC--CCCCCccchhhhHHHHHhhCCCC-CCChhh
Q 004901 179 GGPSFLEKALRFLEKFGTKVEGILR-QAADVEEVDRRVQEYEQGKTEF--SADEDAHVIGDCVKHVLRELPSS-PVPASC 254 (724)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR-~sg~~~~v~~L~~~ld~g~~~~--~~~~d~h~vA~lLK~fLReLPeP-Llp~~l 254 (724)
.||.++..|+.+++.+|+..+|||| +++....+..++.++.+|.... ..+.+... |+++|.|+|.|.+| +|+++.
T Consensus 217 ~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~e~ 295 (640)
T KOG3565|consen 217 FIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPFED 295 (640)
T ss_pred cccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcccc
Confidence 5899999999999999999999999 8899999999999999984221 22234445 99999999999999 999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCC
Q 004901 255 CTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPL 326 (724)
Q Consensus 255 ~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~ 326 (724)
|..++.+....+.-.++..++.++. .+|..+..++.+++.|+...+.++..|-|++.|+|+||||.++..+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~~~~l~~f~~~l~~~~~~~~~~~~n~~~~~g~~~~~~~ 366 (640)
T KOG3565|consen 296 FGQPHDCAARDNLLSRALHVRKLLK-SLPNQVGIELRKLFAFLSKLSQLSDENMMDPYNLAICFGPTLEPVP 366 (640)
T ss_pred ccchhhhhhhcCchhhhhhhhhhhh-ccccHHHHHHHHHHHhhhhhhhhccccccCccccccccccccccCc
Confidence 9999999888777777788887664 8999999999999999999999999999999999999999997655
No 86
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=99.04 E-value=1.5e-09 Score=101.30 Aligned_cols=103 Identities=24% Similarity=0.395 Sum_probs=58.6
Q ss_pred EEEeeeeee-------cc-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCC-----CceeeeeeCcEEcCCCcceeec--
Q 004901 20 FKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQR-----GGEVNLTLGGIDLNNSGSVVVR-- 84 (724)
Q Consensus 20 ~KeG~L~l~-------Kk-g~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~-----~~~~~l~L~~I~L~~~~sv~~~-- 84 (724)
.|+|||..+ |+ +.+.++|+..|+||+|+.|++||+........ .....-+...|.|..+......
T Consensus 1 ~keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY 80 (119)
T PF15410_consen 1 YKEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDY 80 (119)
T ss_dssp --EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTB
T ss_pred CceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCccc
Confidence 378988754 11 12467899999999999999999943211100 1111223444666665443222
Q ss_pred cCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 85 ~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
..+++.|.+. +.+|..|+|||.|.++|++||.+|+.+.
T Consensus 81 ~Kr~~VFrL~--~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A 118 (119)
T PF15410_consen 81 TKRKNVFRLR--TADGSEYLFQASDEEEMNEWIDAINYAA 118 (119)
T ss_dssp TTCSSEEEEE---TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred ccCCeEEEEE--eCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence 3345666665 4579999999999999999999998764
No 87
>PF15409 PH_8: Pleckstrin homology domain
Probab=99.04 E-value=1.5e-09 Score=95.49 Aligned_cols=86 Identities=27% Similarity=0.477 Sum_probs=60.0
Q ss_pred eeeeeeccCCCCCCcEEEEEEE--eCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCC
Q 004901 23 GPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (724)
Q Consensus 23 G~L~l~Kkg~~~k~WKKRWFVL--~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~g 100 (724)
|||.++ +....++|++|||+| ..+.|.||+++.+.. .-+.|+|..+. +... .+...+.|.. ..
T Consensus 1 G~llKk-rr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~---------~rGsi~v~~a~-is~~-~~~~~I~ids---g~ 65 (89)
T PF15409_consen 1 GWLLKK-RRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGK---------LRGSIDVSLAV-ISAN-KKSRRIDIDS---GD 65 (89)
T ss_pred Ccceee-ccccCCCceeEEEEEEcCCcEEEEEecCCCCe---------eEeEEEccceE-EEec-CCCCEEEEEc---CC
Confidence 666533 344588999999999 889999999876542 23345555432 2222 2333444433 36
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHH
Q 004901 101 RAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 101 r~y~fqAdSeeE~~eWi~AL~~a 123 (724)
.+|+|.|.++++.+.|+.||+.|
T Consensus 66 ~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 66 EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred eEEEEEcCCHHHHHHHHHHHHhc
Confidence 89999999999999999999865
No 88
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=99.00 E-value=4.8e-09 Score=90.76 Aligned_cols=97 Identities=33% Similarity=0.512 Sum_probs=67.0
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceEEEE
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLTVLF 94 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~----~Kk~~fvit 94 (724)
++++|||+....+ ....|++|||+|.++.|.||++...... .. ....|.|..+....... ..+++|.+.
T Consensus 1 ~~~~G~l~~~~~~-~~~~~~~~~~~L~~~~l~~~~~~~~~~~-~~-----~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~ 73 (102)
T smart00233 1 VIKEGWLYKKSGG-KKKSWKKRYFVLFNSTLLYYKSEKAKKD-YK-----PKGSIDLSGITVREAPDPDSAKKPHCFEIK 73 (102)
T ss_pred CceeEEEEEeCCC-ccCCceEEEEEEECCEEEEEeCCCcccc-CC-----CceEEECCcCEEEeCCCCccCCCceEEEEE
Confidence 3689977754443 5678999999999999999998765321 11 23335555542221222 245677776
Q ss_pred ecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 95 PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 95 ~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
.. ++..|+|+|+|..++..|+.+|+.++
T Consensus 74 ~~--~~~~~~f~~~s~~~~~~W~~~i~~~~ 101 (102)
T smart00233 74 TA--DRRSYLLQAESEEEREEWVDALRKAI 101 (102)
T ss_pred ec--CCceEEEEcCCHHHHHHHHHHHHHhh
Confidence 53 23599999999999999999999875
No 89
>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=98.81 E-value=5.2e-09 Score=110.37 Aligned_cols=108 Identities=17% Similarity=0.317 Sum_probs=84.6
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEe-CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~-~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fv 92 (724)
.....|+|+| |++|+|...++|+.|||+|. ++.|.-|+.++....+. ..+|..+.+..|........++..|+
T Consensus 10 ~~~~~vvkEg--WlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~----p~pLNnF~v~~cq~m~~erPrPntFi 83 (516)
T KOG0690|consen 10 MSQEDVVKEG--WLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPT----PEPLNNFMVRDCQTMKTERPRPNTFI 83 (516)
T ss_pred cchhhhHHhh--hHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCC----cccccchhhhhhhhhhccCCCCceEE
Confidence 4556799999 66699999999999999997 47999999876543222 24777888888777656666777777
Q ss_pred E-EecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 93 L-FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 93 i-t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
| +..++.-...+|++++.+++++|+.||+.+....
T Consensus 84 iRcLQWTTVIERTF~ves~~eRq~W~~AIq~vsn~l 119 (516)
T KOG0690|consen 84 IRCLQWTTVIERTFYVESAEERQEWIEAIQAVSNRL 119 (516)
T ss_pred EEeeeeeeeeeeeeecCCHHHHHHHHHHHHHHhhhh
Confidence 6 4566666778999999999999999999887644
No 90
>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain. Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.76 E-value=4.1e-08 Score=86.70 Aligned_cols=99 Identities=33% Similarity=0.462 Sum_probs=71.4
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe-cC
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG 97 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~-~~ 97 (724)
|++.|||-+..-|.....=|.|||||+..+|+|||+..+..+++ .++|.++.+.....- -..+++||.+.. ..
T Consensus 1 virkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~ky----ilpLdnLk~Rdve~g--f~sk~~~FeLfnpd~ 74 (110)
T cd01256 1 VIRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKY----MLPLDGLKLRDIEGG--FMSRNHKFALFYPDG 74 (110)
T ss_pred CeeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccc----eeeccccEEEeeccc--ccCCCcEEEEEcCcc
Confidence 57899887766665555569999999999999999998876444 456666666553221 135668887753 22
Q ss_pred C----CCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 98 R----DGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 98 ~----~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
+ +-++.-|.|+|+++++.|...+-+|
T Consensus 75 rnvykd~k~lel~~~~~e~vdswkasflra 104 (110)
T cd01256 75 RNVYKDYKQLELGCETLEEVDSWKASFLRA 104 (110)
T ss_pred cccccchheeeecCCCHHHHHHHHHHHHhc
Confidence 1 3367889999999999999887544
No 91
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.74 E-value=7e-08 Score=87.11 Aligned_cols=97 Identities=19% Similarity=0.283 Sum_probs=61.8
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCC--eEE--EEcCCCCCCCCCCceeeeeeCcEEcCCCcc-eeeccCCcceEEEEe
Q 004901 21 KSGPLFISSKGIGWKSWKKRWFILTRT--SLV--FFKNDPSALPQRGGEVNLTLGGIDLNNSGS-VVVREDKKLLTVLFP 95 (724)
Q Consensus 21 KeG~L~l~Kkg~~~k~WKKRWFVL~~~--~L~--yYKd~~~~~p~~~~~~~l~L~~I~L~~~~s-v~~~~~Kk~~fvit~ 95 (724)
|+||||++.+......|.++||...+. .+. -+...... +.++. +. .-..+.|..|.. .....+++|||.|+.
T Consensus 1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~-~~~g~-v~-~~e~~~l~sc~~r~~~~~dRRFCFei~~ 77 (104)
T cd01249 1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKT-DMKGA-VA-QDETLTLKSCSRRKTESIDKRFCFDVEV 77 (104)
T ss_pred CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEeccccccc-ccCcc-cc-cceEEeeeeccccccCCccceeeEeeee
Confidence 589999998777677899999998874 321 22222100 11111 10 111233444333 223468899999876
Q ss_pred cCCCCceEEEEeCCHHHHHHHHHHHH
Q 004901 96 DGRDGRAFTLKAETSEDLYEWKTALE 121 (724)
Q Consensus 96 ~~~~gr~y~fqAdSeeE~~eWi~AL~ 121 (724)
.... .+++|||+++.++..||.||.
T Consensus 78 ~~~~-~~~~lQA~Se~~~~~Wi~A~d 102 (104)
T cd01249 78 EEKP-GVITMQALSEKDRRLWIEAMD 102 (104)
T ss_pred cCCC-CeEEEEecCHHHHHHHHHhhc
Confidence 5444 479999999999999999984
No 92
>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.73 E-value=1e-08 Score=91.22 Aligned_cols=98 Identities=19% Similarity=0.349 Sum_probs=67.3
Q ss_pred EEEeeeeeeccCC-CCCCcEEEEEEEeCCeEE-----EEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-------ccC
Q 004901 20 FKSGPLFISSKGI-GWKSWKKRWFILTRTSLV-----FFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------RED 86 (724)
Q Consensus 20 ~KeG~L~l~Kkg~-~~k~WKKRWFVL~~~~L~-----yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-------~~~ 86 (724)
.++|||| +.|+ .+|.||||||+|.+-+-| -|+.++ ..+...+.|.|+.++-+..... -..
T Consensus 3 k~sGyL~--k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekk-----s~P~e~~qldGyTvDy~~~~~~~~~~~~~~~g 75 (117)
T cd01234 3 KHCGYLY--AIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKK-----AEPTEFIQLDGYTVDYMPESDPDPNSELSLQG 75 (117)
T ss_pred ceeEEEE--eccchhhhhhheeEEEEEchhHHHHHHHhhhhhc-----CCchhheeecceEEeccCCCCCCccccccccc
Confidence 4899776 6666 799999999999986433 343332 2344456788877776544221 123
Q ss_pred CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 87 Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
.++||-..- .|-...|..+++.|+.-|++||-+|..++
T Consensus 76 g~~ff~avk---egd~~~fa~~de~~r~lwvqa~yratgqs 113 (117)
T cd01234 76 GRHFFNAVK---EGDELKFATDDENERHLWVQAMYRATGQS 113 (117)
T ss_pred chhhhheec---cCcEEEEeccchHHHHHHHHHHHHHcCcc
Confidence 455554332 27789999999999999999999887643
No 93
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.73 E-value=4.4e-08 Score=83.88 Aligned_cols=93 Identities=31% Similarity=0.538 Sum_probs=61.8
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--CcceEEEEecCC
Q 004901 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--KKLLTVLFPDGR 98 (724)
Q Consensus 21 KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~--Kk~~fvit~~~~ 98 (724)
++|||+....+. ...|++|||+|.++.|.+|+...... ... +.+.+.+........... ..++|.|...
T Consensus 1 ~~G~l~~~~~~~-~~~w~~~~~~L~~~~l~~~~~~~~~~-~~~-----~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~-- 71 (96)
T cd00821 1 KEGYLLKKTGKL-RKGWKRRWFVLFNDLLLYYKKKSSKK-SYK-----PKGSIPLSGAEVEESPDDSGRKNCFEIRTP-- 71 (96)
T ss_pred CcchhhhhhChh-hCCccEEEEEEECCEEEEEECCCCCc-CCC-----CcceEEcCCCEEEECCCcCCCCcEEEEecC--
Confidence 468666433332 47899999999999999998876531 011 223344444222212222 3577777653
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHH
Q 004901 99 DGRAFTLKAETSEDLYEWKTALEL 122 (724)
Q Consensus 99 ~gr~y~fqAdSeeE~~eWi~AL~~ 122 (724)
+++.|+|+|+|..++..|+.+|+.
T Consensus 72 ~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 72 DGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCcEEEEEeCCHHHHHHHHHHHhc
Confidence 248999999999999999999975
No 94
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=98.69 E-value=1.6e-07 Score=81.04 Aligned_cols=96 Identities=26% Similarity=0.458 Sum_probs=62.5
Q ss_pred EeeeeeeccCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCC
Q 004901 22 SGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (724)
Q Consensus 22 eG~L~l~Kkg~--~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~ 99 (724)
+|||.....+. ....|++|||+|.++.|+||+++....... ..+++..+.+..... ....+++|.+......
T Consensus 2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~---~~~~l~~~~v~~~~~---~~~~~~~F~i~~~~~~ 75 (99)
T cd00900 2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKP---GSIPLSEISVEEDPD---GSDDPNCFAIVTKDRG 75 (99)
T ss_pred ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCC---CEEEccceEEEECCC---CCCCCceEEEECCCCC
Confidence 57555333332 257899999999999999999987654221 123333333222110 0124567777643213
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Q 004901 100 GRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 100 gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
.+.|+|+|+|.+++..|+.+|+.+
T Consensus 76 ~~~~~~~~~~~~~~~~W~~al~~~ 99 (99)
T cd00900 76 RRVFVFQADSEEEAQEWVEALQQA 99 (99)
T ss_pred cEEEEEEcCCHHHHHHHHHHHhcC
Confidence 689999999999999999999853
No 95
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=98.55 E-value=6.1e-08 Score=109.64 Aligned_cols=168 Identities=15% Similarity=0.175 Sum_probs=140.2
Q ss_pred CCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHH----HH-HHHhcCCcCCCCCCCccc
Q 004901 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDR----RV-QEYEQGKTEFSADEDAHV 233 (724)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~----L~-~~ld~g~~~~~~~~d~h~ 233 (724)
...+...||+||+..+.+.+.+|..+......|...+..++++||..-...-+.+ .. +....|.....+...+|+
T Consensus 410 ~~l~kv~fdaPlS~~c~d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr~vdv~sspv~t 489 (741)
T KOG4724|consen 410 SELAKVPFDAPLSVFCADQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGRPVDVPSSPVHT 489 (741)
T ss_pred hhhhhCcCCCchhhcccccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCCcccCCCCCchH
Confidence 4455679999999999999999999988888899999999999998544433322 22 222336666666779999
Q ss_pred hhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHH-------HHHccCChhHHHHHHHHHHHHHHhhccccc
Q 004901 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRS-------AILETFPEPNRRLLQRILRMMHTISSHAHE 306 (724)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~-------lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~ 306 (724)
++.++|.|+|.+|..++..+++.+++++....+++++.++++. +.....|..+..+....+.-...+..++..
T Consensus 490 aasv~KdfnRKtpRgi~sr~ihke~~ea~~lq~EedrtEaLk~~~gks~~fv~~~~Prg~s~~~shsvf~~~i~S~nse~ 569 (741)
T KOG4724|consen 490 AASVHKDFNRKTPRGIPSREIHKESMEATFLQHEEDRTEALKAGSGKSQDFVRDHVPRGGSNVRKHSVFAGRIVSENSEE 569 (741)
T ss_pred HHHHHHHhhhhcCCCccchHHHHHhhhhhhccchHHHHHHHHhhcCCcccccccCCCCCcccccccccccceeccccccc
Confidence 9999999999999999999999999999998888899999987 133688999888888888888888899999
Q ss_pred CCCCccchhhhccccccCCC
Q 004901 307 NRMTPSAVAACMAPLLLRPL 326 (724)
Q Consensus 307 NkMt~~NLAivfgP~Llr~~ 326 (724)
+.|+..|++.|..|+++...
T Consensus 570 ~s~dsSn~~~csrpn~~tvd 589 (741)
T KOG4724|consen 570 TSNDSSNPGFCSRPNALTVD 589 (741)
T ss_pred ccccccccCCCCCccccchh
Confidence 99999999999999998754
No 96
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=98.50 E-value=1.1e-06 Score=79.33 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=55.8
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCC
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~ 98 (724)
.+|+|+|. |.+. ...|+|+||.+. +.|.|+.-......+-.....++|.++.+..... ....+++|.|...
T Consensus 2 ~ikEG~L~--K~~~-k~~~~R~~FLFn-D~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~---~~~~~~~F~I~~~-- 72 (99)
T cd01220 2 FIRQGCLL--KLSK-KGLQQRMFFLFS-DLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEH---EWGVPHCFTIFGG-- 72 (99)
T ss_pred eeeEEEEE--EEeC-CCCceEEEEEcc-ceEEEEEeecCCCceEEEEEEEEcCceEEeeccC---CcCCceeEEEEcC--
Confidence 58999665 5443 335665555544 4555554321100000112233444444332111 1134577877643
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 99 ~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.+.|.|+|.|++|+.+|+.+|+.+|.
T Consensus 73 -~ks~~l~A~s~~Ek~~Wi~~i~~aI~ 98 (99)
T cd01220 73 -QCAITVAASTRAEKEKWLADLSKAIA 98 (99)
T ss_pred -CeEEEEECCCHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999985
No 97
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.47 E-value=4.3e-07 Score=82.51 Aligned_cols=95 Identities=25% Similarity=0.373 Sum_probs=59.9
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc-EEcCCCcc--e-----eeccCCcceEE
Q 004901 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGS--V-----VVREDKKLLTV 92 (724)
Q Consensus 21 KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~-I~L~~~~s--v-----~~~~~Kk~~fv 92 (724)
.+|+||++.-| .++|||+||+|++.-|+|+-..+...+. .|.. +.+.+... . .-.....++|+
T Consensus 2 ~~g~LylK~~g--kKsWKk~~f~LR~SGLYy~~Kgksk~sr-------dL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~ 72 (114)
T cd01259 2 MEGPLYLKADG--KKSWKKYYFVLRSSGLYYFPKEKTKNTR-------DLACLNLLHGHNVYTGLGWRKKYKSPTDYCFG 72 (114)
T ss_pred ccceEEEccCC--CccceEEEEEEeCCeeEEccCCCcCCHH-------HHHHHHhcccCcEEEEechhhccCCCCCceEE
Confidence 47999976555 6889999999999999887543332221 1111 11111110 0 11123348898
Q ss_pred EEecCC----CCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 93 LFPDGR----DGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 93 it~~~~----~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
+.+... ..-.-+|+|+++..+..|+.|||-+.
T Consensus 73 ~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~K 108 (114)
T cd01259 73 FKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIAK 108 (114)
T ss_pred EeccccCcccchhheeeccCCHHHHHHHHHHHHHHh
Confidence 865321 12367899999999999999999664
No 98
>KOG1090 consensus Predicted dual-specificity phosphatase [General function prediction only]
Probab=98.47 E-value=6e-08 Score=112.73 Aligned_cols=95 Identities=25% Similarity=0.469 Sum_probs=73.2
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeC--CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee----ccCCcc
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTR--TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKL 89 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~--~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~----~~~Kk~ 89 (724)
..+-+.+|||| |+|...|.||.|||||.. ..|+||.+..++.|+| .|+|....++.. ..+.|-
T Consensus 1631 teNr~~eG~Ly--KrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG---------~IdLaevesv~~~~~k~vdekg 1699 (1732)
T KOG1090|consen 1631 TENRIPEGYLY--KRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKG---------CIDLAEVESVALIGPKTVDEKG 1699 (1732)
T ss_pred ccccCcccchh--hcchhhcccccceeEecCCccceeeecccccccccc---------hhhhhhhhhhcccCccccCccc
Confidence 34456699777 999999999999999986 5999999998887444 466665544433 123445
Q ss_pred eEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 90 ~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
||.+... .|+|-|+|.+....++|+..|+.++
T Consensus 1700 ffdlktt---~rvynf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1700 FFDLKTT---NRVYNFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred eeeeehh---hHHHHHHhccchHHHHHHHHHHHhh
Confidence 5666542 6999999999999999999999876
No 99
>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.46 E-value=2.1e-06 Score=79.06 Aligned_cols=104 Identities=15% Similarity=0.167 Sum_probs=71.3
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCC--CCceeeeee--CcEEcCCCcc--ee--eccCCcceE
Q 004901 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ--RGGEVNLTL--GGIDLNNSGS--VV--VREDKKLLT 91 (724)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~--~~~~~~l~L--~~I~L~~~~s--v~--~~~~Kk~~f 91 (724)
..+|||.+.+.++..++|+++|+||.+..|++|..+.+...+ ......+++ +.+.+...+. +. ...+-++.|
T Consensus 3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If 82 (122)
T cd01243 3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF 82 (122)
T ss_pred cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence 468988888887777899999999999999999876654332 223344444 2355543222 11 123334667
Q ss_pred EEEe----cCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 92 VLFP----DGRDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 92 vit~----~~~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
.|+. ....+...||-|+++.|.+.|+.||...
T Consensus 83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l 118 (122)
T cd01243 83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL 118 (122)
T ss_pred EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence 6654 2224578999999999999999999864
No 100
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=98.29 E-value=9.3e-06 Score=73.84 Aligned_cols=103 Identities=13% Similarity=0.268 Sum_probs=68.4
Q ss_pred EEeeeeeeccCCC--CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeC-cEEcCCCcc--ee--eccCCcceEEE
Q 004901 21 KSGPLFISSKGIG--WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLG-GIDLNNSGS--VV--VREDKKLLTVL 93 (724)
Q Consensus 21 KeG~L~l~Kkg~~--~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~-~I~L~~~~s--v~--~~~~Kk~~fvi 93 (724)
.+|||-+.+.+.. .++|+++|+||.+..|++|..+.+.... .+...+.++ .+.+...+. +. ...+-++.|.|
T Consensus 2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~-~p~~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I 80 (112)
T cd01242 2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENS-TPSMILDIDKLFHVRPVTQGDVYRADAKEIPKIFQI 80 (112)
T ss_pred cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCC-CcEEEEEccceeeeecccHHHeeecCcccCCeEEEE
Confidence 4897766666554 4689999999999999999877654321 233333332 233333222 11 12333467777
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
+.. ..+++.+|-|+++.|.+.|+.+|.+-|.
T Consensus 81 ~~~-~~~~~lllLA~s~~ek~kWV~~L~~~~~ 111 (112)
T cd01242 81 LYA-NEARDLLLLAPQTDEQNKWVSRLVKKIP 111 (112)
T ss_pred EeC-CccceEEEEeCCchHHHHHHHHHHHhcc
Confidence 653 3469999999999999999999988763
No 101
>KOG3640 consensus Actin binding protein Anillin [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=98.24 E-value=1.3e-06 Score=102.06 Aligned_cols=103 Identities=25% Similarity=0.399 Sum_probs=76.2
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC------C-cc
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED------K-KL 89 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~------K-k~ 89 (724)
-.|.--|||++..-+.++..|+||||+|.|+.+.|||.+.+.+.+. +++.|+|+.|+.-..... + +.
T Consensus 988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~------Pig~IDLt~CTsq~ie~a~rdicar~nt 1061 (1116)
T KOG3640|consen 988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKV------PIGQIDLTKCTSQSIEEARRDICARPNT 1061 (1116)
T ss_pred cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccC------cceeeehhhhhccccccchhhhccCCce
Confidence 3467779999888888889999999999999999999988765333 788899999887322211 1 23
Q ss_pred eEEEEe--cCCC-------Cc-eEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 90 LTVLFP--DGRD-------GR-AFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 90 ~fvit~--~~~~-------gr-~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
|++.+. ...+ .| ..+|.|+|.++++.|+.+|..++.
T Consensus 1062 Fhie~~rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1062 FHIEVWRPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred eEEEeecccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence 333321 0000 12 578999999999999999999875
No 102
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=98.21 E-value=8.6e-06 Score=90.85 Aligned_cols=147 Identities=12% Similarity=0.160 Sum_probs=118.0
Q ss_pred CcHHHHHHHHHHHhcCCCcCCee---ecCCCHHHHHHHHHHH-hcCCcC----------CCCCCCccchhhhHHHHHhhC
Q 004901 180 GPSFLEKALRFLEKFGTKVEGIL---RQAADVEEVDRRVQEY-EQGKTE----------FSADEDAHVIGDCVKHVLREL 245 (724)
Q Consensus 180 VP~il~~~i~~L~~~Gl~~EGIF---R~sg~~~~v~~L~~~l-d~g~~~----------~~~~~d~h~vA~lLK~fLReL 245 (724)
|=.+|+.|...|..+|+++++|| |-.-+...++.+...| ..+... .....++|+++++||-.+..|
T Consensus 8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL 87 (420)
T PF08101_consen 8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL 87 (420)
T ss_pred HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 34578899999999999999998 7777888888877754 433211 123469999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCC-hhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccC
Q 004901 246 PSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFP-EPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (724)
Q Consensus 246 PePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP-~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr 324 (724)
|..+|+++.|..|...-+..+ -...++..+|-..|| +.|..++.-++.+|..|+.|+..|+|+..-|+-.+|+-+|-
T Consensus 88 p~gvVgW~~Y~~Fk~~E~~~~--yp~~AF~~~lp~~l~s~a~~~Iv~dFfdLL~sIaa~s~~NglsgrKlsrm~g~WaF~ 165 (420)
T PF08101_consen 88 PGGVVGWDSYEEFKRREREAG--YPRDAFLTFLPQCLPSPAHASIVYDFFDLLSSIAAHSKKNGLSGRKLSRMAGIWAFG 165 (420)
T ss_pred CCCccccHHHHHHHHHHhhcC--CChHHHHHhccccCCChhHHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHCC
Confidence 999999999999987644332 234556666666774 66788999999999999999999999999999999999998
Q ss_pred CCCC
Q 004901 325 PLLA 328 (724)
Q Consensus 325 ~~~~ 328 (724)
....
T Consensus 166 ~~~~ 169 (420)
T PF08101_consen 166 HPDF 169 (420)
T ss_pred CCCc
Confidence 7743
No 103
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=98.10 E-value=1.7e-05 Score=72.24 Aligned_cols=91 Identities=24% Similarity=0.289 Sum_probs=59.2
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCC-eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~-~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit 94 (724)
...++++|++. |+.+.+ +++|||+|+++ .|+|+...... .-+.|.++....+.... .+.|++.+
T Consensus 10 ge~Il~~g~v~--K~kgl~--~kkR~liLTd~PrL~Yvdp~~~~----------~KGeI~~~~~l~v~~k~-~~~F~I~t 74 (104)
T PF14593_consen 10 GELILKQGYVK--KRKGLF--AKKRQLILTDGPRLFYVDPKKMV----------LKGEIPWSKELSVEVKS-FKTFFIHT 74 (104)
T ss_dssp T--EEEEEEEE--EEETTE--EEEEEEEEETTTEEEEEETTTTE----------EEEEE--STT-EEEECS-SSEEEEEE
T ss_pred CCeEEEEEEEE--EeeceE--EEEEEEEEccCCEEEEEECCCCe----------ECcEEecCCceEEEEcc-CCEEEEEC
Confidence 67899999666 443334 89999999987 77666543321 23568888766655533 34556666
Q ss_pred ecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 95 ~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
+ +|+|+|... ...+..|+.+|+.++.+
T Consensus 75 p----~RtY~l~d~-~~~A~~W~~~I~~~~~~ 101 (104)
T PF14593_consen 75 P----KRTYYLEDP-EGNAQQWVEAIEEVKKQ 101 (104)
T ss_dssp T----TEEEEEE-T-TS-HHHHHHHHHHHHHH
T ss_pred C----CcEEEEECC-CCCHHHHHHHHHHHHHH
Confidence 6 899999884 56788999999998753
No 104
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.03 E-value=1.4e-05 Score=91.57 Aligned_cols=114 Identities=27% Similarity=0.402 Sum_probs=74.9
Q ss_pred CCceEEEeeeeeeccCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-----cCC
Q 004901 16 SNTVFKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----EDK 87 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~---~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~-----~~K 87 (724)
...|.|+|.++.+-+|. +.+.+|||||.|++..|.|.|++... +...|.+.+...|..- ..+
T Consensus 562 ~p~v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q----------~~~~Ipl~nI~avEklee~sF~~k 631 (800)
T KOG2059|consen 562 EPVVLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ----------PIYTIPLSNIRAVEKLEEKSFKMK 631 (800)
T ss_pred CCceecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC----------cccceeHHHHHHHHHhhhhccCCC
Confidence 34466666555443332 24678999999999999999997654 3444566555443211 233
Q ss_pred cceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCcchhhccCCccccCCC
Q 004901 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPSAALVMGHNGIFRNDT 144 (724)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~~a~~~g~~~~f~~~~ 144 (724)
+.+.||.. .|+.||||.+..|.++|+.+|+++-..+++. ...-|.|.|+.+.
T Consensus 632 nv~qVV~~----drtly~Q~~n~vEandWldaL~kvs~~N~~r-Las~HPgaF~s~~ 683 (800)
T KOG2059|consen 632 NVFQVVHT----DRTLYVQAKNCVEANDWLDALRKVSCCNQNR-LASYHPGAFRSDS 683 (800)
T ss_pred ceEEEEec----CcceeEecCCchHHHHHHHHHHHHhccCcch-hhhcCCcccccCc
Confidence 44556655 3899999999999999999999987533221 1123456676654
No 105
>KOG3751 consensus Growth factor receptor-bound proteins (GRB7, GRB10, GRB14) [Signal transduction mechanisms]
Probab=97.86 E-value=2.6e-05 Score=86.78 Aligned_cols=104 Identities=24% Similarity=0.287 Sum_probs=63.2
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-----cCCcce
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----EDKKLL 90 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~-----~~Kk~~ 90 (724)
.+...+.|+||++..| +|+|||.||||+...|||+-..+...+.... .+..+.-.+......+ ....++
T Consensus 314 ~~~pei~GfL~~K~dg--kKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq----~l~~~~~snVYt~i~~rKkyksPTd~~ 387 (622)
T KOG3751|consen 314 SSPPEIQGFLYLKEDG--KKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQ----CLADLHSSNVYTGIGGRKKYKSPTDYG 387 (622)
T ss_pred CCCccccceeeecccc--cccceeEEEEEecCcceEccCCCCCCchhhH----HHHhcccCceEEeecchhccCCCCCce
Confidence 3446789999865444 7899999999999999888554433332111 1111111111111111 122366
Q ss_pred EEEEecCCCC---ceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 91 TVLFPDGRDG---RAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 91 fvit~~~~~g---r~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
|-|.+....+ -.-+|||+++..+..|+.|||-+..
T Consensus 388 f~~K~~~~~~~~r~lk~lCAEDe~t~~~WltAiRl~Ky 425 (622)
T KOG3751|consen 388 FCIKPNKLRNKRRFLKMLCAEDEQTRTCWLTAIRLLKY 425 (622)
T ss_pred EEeeeccccCcccceeeeecccchhHHHHHHHHHHHHH
Confidence 7666522211 2568999999999999999986653
No 106
>KOG0932 consensus Guanine nucleotide exchange factor EFA6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=7.1e-06 Score=91.55 Aligned_cols=112 Identities=28% Similarity=0.363 Sum_probs=72.8
Q ss_pred CCCCCCceEEEeeeeee-------cc-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce--
Q 004901 12 RPGASNTVFKSGPLFIS-------SK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-- 81 (724)
Q Consensus 12 ~~~~~~~V~KeG~L~l~-------Kk-g~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv-- 81 (724)
.+.++-.+.|.|+|-.+ || -.++++||.-|.+|+|-.||+-||.-... . .+..-+|.+..++
T Consensus 499 ~~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~--k------alse~~lknavsvHH 570 (774)
T KOG0932|consen 499 PPDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPG--K------ALSESDLKNAVSVHH 570 (774)
T ss_pred CCCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcc--c------chhhhhhhhhhhhhh
Confidence 34556678999966533 11 13467899999999999999999754311 1 2222333332221
Q ss_pred ----eeccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh--cCCcch
Q 004901 82 ----VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA--QAPSAA 131 (724)
Q Consensus 82 ----~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~--~ap~~a 131 (724)
...+.+|..||+..++.+.|+|+|||.+.+||+.||..|.-+.+ +||.-+
T Consensus 571 ALAt~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vAA~fSaPpfP 626 (774)
T KOG0932|consen 571 ALATPATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVAAAFSAPPFP 626 (774)
T ss_pred hhcCCCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHHHhccCCCCc
Confidence 11123333455555667899999999999999999999988764 455443
No 107
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.75 E-value=0.00023 Score=64.97 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=61.8
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecC
Q 004901 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (724)
..+++|.|. |.. ++..+.|||.|-++.|+|-+-.... .+......++|.++.+.+... ....+..|.|...
T Consensus 3 ~li~eG~L~--K~~--rk~~~~R~ffLFnD~LvY~~~~~~~-~~~~~~~~i~L~~~~v~~~~d---~~~~~n~f~I~~~- 73 (104)
T cd01218 3 VLVGEGVLT--KMC--RKKPKQRQFFLFNDILVYGNIVISK-KKYNKQHILPLEGVQVESIED---DGIERNGWIIKTP- 73 (104)
T ss_pred EEEecCcEE--Eee--cCCCceEEEEEecCEEEEEEeecCC-ceeeEeeEEEccceEEEecCC---cccccceEEEecC-
Confidence 468899665 333 4557889999999999885321110 000112234555554433211 1122345555432
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 98 RDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 98 ~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
.+.|.++|+|++|..+|+.+|..|+.+
T Consensus 74 --~kSf~v~A~s~~eK~eWl~~i~~ai~~ 100 (104)
T cd01218 74 --TKSFAVYAATETEKREWMLHINKCVTD 100 (104)
T ss_pred --CeEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999864
No 108
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.70 E-value=0.00034 Score=64.69 Aligned_cols=103 Identities=19% Similarity=0.277 Sum_probs=65.6
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCC-CC--Cceee----eeeCcEEcCCCcceeeccCCcc
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP-QR--GGEVN----LTLGGIDLNNSGSVVVREDKKL 89 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p-~~--~~~~~----l~L~~I~L~~~~sv~~~~~Kk~ 89 (724)
+..+++|-| .|-+...+.++.|+|.|-++.|.|.|....... .| ++.+. +++..+.+..... ...-++
T Consensus 2 ~elI~EG~L--~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d---~~~~kn 76 (112)
T cd01261 2 NEFIMEGTL--TRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPD---SSEYKN 76 (112)
T ss_pred ccccccCcE--EEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCC---CcccCc
Confidence 457889944 454544567899999999999999986543211 11 11111 2333344432111 111245
Q ss_pred eEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 90 ~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
.|.|... +++.|.|+|.|+++..+||.+|..++.+
T Consensus 77 aF~I~~~--~~~s~~l~Akt~eeK~~Wm~~l~~~~~~ 111 (112)
T cd01261 77 AFEIILK--DGNSVIFSAKNAEEKNNWMAALISVQTK 111 (112)
T ss_pred eEEEEcC--CCCEEEEEECCHHHHHHHHHHHHHHhcC
Confidence 6766542 2578999999999999999999988753
No 109
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.65 E-value=0.00014 Score=66.61 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=57.1
Q ss_pred CCCCcEEEEEEEeCCeEEEEcCCCCCCC-CCCceeeeeeC--cEEcCCCcce-eeccCCcceEEEEecCCCCceEEEEeC
Q 004901 33 GWKSWKKRWFILTRTSLVFFKNDPSALP-QRGGEVNLTLG--GIDLNNSGSV-VVREDKKLLTVLFPDGRDGRAFTLKAE 108 (724)
Q Consensus 33 ~~k~WKKRWFVL~~~~L~yYKd~~~~~p-~~~~~~~l~L~--~I~L~~~~sv-~~~~~Kk~~fvit~~~~~gr~y~fqAd 108 (724)
..+.|+.+|++|++..|++|+..+-... ...+....+|. -+.+...... .....+.+||.+...+. -..+||..+
T Consensus 15 ~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irtg~~-vesh~fsVE 93 (108)
T cd01258 15 SSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRTGTQ-VENHYLRVE 93 (108)
T ss_pred cccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEcCCc-eeeEEEEec
Confidence 4689999999999999999998765321 11222222222 1111111110 00124557888866432 389999999
Q ss_pred CHHHHHHHHHHHHH
Q 004901 109 TSEDLYEWKTALEL 122 (724)
Q Consensus 109 SeeE~~eWi~AL~~ 122 (724)
+..|+..|..||..
T Consensus 94 t~~dL~~W~raiv~ 107 (108)
T cd01258 94 THRDLASWERALVR 107 (108)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999999863
No 110
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=97.63 E-value=0.00022 Score=83.33 Aligned_cols=104 Identities=19% Similarity=0.288 Sum_probs=73.3
Q ss_pred CceEEEeeeeeecc-CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc----CCcceE
Q 004901 17 NTVFKSGPLFISSK-GIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE----DKKLLT 91 (724)
Q Consensus 17 ~~V~KeG~L~l~Kk-g~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~----~Kk~~f 91 (724)
..+.++||||.-.. ..+..-.++|||||.+..|.|||.++... .++++...+..++.|.... ..+.+|
T Consensus 2 ~~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~-------~~pirs~~id~~~rVed~Gr~~~~g~~~y 74 (719)
T PLN00188 2 SKVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDN-------QVPIKTLLIDGNCRVEDRGLKTHHGHMVY 74 (719)
T ss_pred CcceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccc-------cccceeeccCCCceEeecCceEEcCceEE
Confidence 45789999996644 33455579999999999999999876432 2355555555544443222 123456
Q ss_pred EEEec--CCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 92 VLFPD--GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 92 vit~~--~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
+++.. ....+...|.|-+.+|...|+.||+.|+.++
T Consensus 75 vl~~Yn~~~~~~~~~~~a~~~eea~~W~~a~~~a~~q~ 112 (719)
T PLN00188 75 VLSVYNKKEKYHRITMAAFNIQEALIWKEKIESVIDQH 112 (719)
T ss_pred EEEEecCCCccccEEEecCCHHHHHHHHHHHHHHHhhh
Confidence 66543 2334678999999999999999999999865
No 111
>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.51 E-value=0.00032 Score=64.41 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=58.6
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-------ccCCcceEE
Q 004901 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------REDKKLLTV 92 (724)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-------~~~Kk~~fv 92 (724)
+|+|||-.-- ..-+.|||+|++|+...|.+|+++.... ..+.|.|.....|.. .....+||.
T Consensus 1 lkEGWmVHyT--~~d~~rKRhYWrLDsK~Itlf~~e~~sk---------yyKeIPLsEIl~V~~~~~~~~~~~~~~hcFE 69 (117)
T cd01239 1 LKEGWMVHYT--SSDNRRKKHYWRLDSKAITLYQEESGSR---------YYKEIPLAEILSVSSNNGDSVLAKHPPHCFE 69 (117)
T ss_pred CccceEEEEe--cCccceeeeEEEecCCeEEEEEcCCCCe---------eeEEeehHHheEEeccCCCcCCCCCCCcEEE
Confidence 4789663222 2236799999999999999999987655 333344443333321 134558998
Q ss_pred EEecCCCCceEEEEeCC--------------------HHHHHHHHHHHHHH
Q 004901 93 LFPDGRDGRAFTLKAET--------------------SEDLYEWKTALELA 123 (724)
Q Consensus 93 it~~~~~gr~y~fqAdS--------------------eeE~~eWi~AL~~a 123 (724)
|... ..+||++.+. ....+-|-.||+.|
T Consensus 70 i~T~---~~vY~VG~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA 117 (117)
T cd01239 70 IRTT---TNVYFVGGEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA 117 (117)
T ss_pred EEec---CEEEEecccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence 8653 6899997752 23457888888753
No 112
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=97.45 E-value=0.00028 Score=80.80 Aligned_cols=102 Identities=21% Similarity=0.282 Sum_probs=62.5
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEE-cCCCCCCCCCCceeeeeeCcEEcCCCcceee--ccCCcceE
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFF-KNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLT 91 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yY-Kd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~--~~~Kk~~f 91 (724)
..+.+.+.||++ +.+... .|++|||.+.++.+... +..+........ .+...++..+..+.. ...+.++|
T Consensus 373 v~sDv~~~G~l~--k~~~~~-~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~----~~~l~~~~~v~pv~~~~~~~~~~~~ 445 (478)
T PTZ00267 373 VTSDVTHGGYLY--KYSSDM-RWKKRYFYIGNGQLRISLSENPENDGVAPK----SVNLETVNDVFPVPEVYSQKHPNQL 445 (478)
T ss_pred ecCCcccceEEe--ccCCCc-chhhheEEecCCceEEEeccccccCCCCCc----cccHHHhcccccccHHhcCCCCceE
Confidence 345678899665 555544 49999999998755554 322221111011 112223333333211 12345677
Q ss_pred EEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 92 vit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.+. .+.++.++|.|++++++++|+.+|+.++.
T Consensus 446 ~i~--~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 477 (478)
T PTZ00267 446 VLW--FNNGQKIIAYAKTAEDRDQWISKFQRACG 477 (478)
T ss_pred EEE--ecCCcEEEEecCChHHHHHHHHHHHHHhC
Confidence 774 34588999999999999999999999873
No 113
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=97.42 E-value=7.4e-05 Score=89.62 Aligned_cols=98 Identities=21% Similarity=0.374 Sum_probs=70.0
Q ss_pred ceEEEeeeeeeccC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEec
Q 004901 18 TVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD 96 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg-~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~ 96 (724)
.....|+|| ++. ...+.|+||||-..++.+.|++....... .+...++.|.+..+.. ..++++||.|..
T Consensus 273 ~~~~~~~l~--~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~----~~~~dL~~csvk~~~~---~~drr~CF~iiS- 342 (785)
T KOG0521|consen 273 GYRMEGYLR--KKASNASKTWKRRWFSIQDGQLGYQHRGADAEN----VLIEDLRTCSVKPDAE---QRDRRFCFEIIS- 342 (785)
T ss_pred hhhhhhhhh--hhcccchhhHHhhhhhhhccccccccccccccc----cccccchhccccCCcc---cccceeeEEEec-
Confidence 345566555 443 34899999999999999998877554331 2233455555554322 236788997764
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 97 GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 97 ~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
..++|.|||+++.+...||.+|++.+..+
T Consensus 343 --~tks~~lQAes~~d~~~Wi~~i~nsi~s~ 371 (785)
T KOG0521|consen 343 --PTKSYLLQAESEKDCQDWISALQNSILSA 371 (785)
T ss_pred --CCcceEEecCchhHHHHHHHHHHHHHHHH
Confidence 26899999999999999999999999754
No 114
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=96.79 E-value=0.00065 Score=76.45 Aligned_cols=95 Identities=29% Similarity=0.437 Sum_probs=63.4
Q ss_pred EEEeeeeee-ccCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCC------cce
Q 004901 20 FKSGPLFIS-SKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDK------KLL 90 (724)
Q Consensus 20 ~KeG~L~l~-Kkg~--~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~K------k~~ 90 (724)
..+| -++ |||. .++.|+.|||.|.|..|.|-|........ ...|++....+|..-..| +..
T Consensus 736 ~iEG--QLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~--------~~~IDl~~IRSVk~v~~kr~~rslpKA 805 (851)
T KOG3723|consen 736 LIEG--QLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSD--------DCPIDLSKIRSVKAVAKKRRDRSLPKA 805 (851)
T ss_pred hhcc--hhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCC--------CCCccHHHhhhHHHHHhhhhhcccchh
Confidence 6677 333 3342 37789999999999999997765432211 123666665554311111 134
Q ss_pred EEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 91 fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
|.|+.- +.+|.|.|.++.-.++|+++|+=|++.+
T Consensus 806 FEIFTA---D~T~ILKaKDeKNAEEWlqCL~IavAHa 839 (851)
T KOG3723|consen 806 FEIFTA---DKTYILKAKDEKNAEEWLQCLNIAVAHA 839 (851)
T ss_pred hheeec---CceEEeecccccCHHHHHHHHHHHHHHH
Confidence 655432 5789999999999999999999988755
No 115
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=96.76 E-value=0.00029 Score=79.64 Aligned_cols=106 Identities=21% Similarity=0.314 Sum_probs=67.2
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceE-EEEe
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLT-VLFP 95 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~f-vit~ 95 (724)
.+.-.+||||.-.+. .||.||||||+|-.-.-|-|.-..-...+..+...+.|.|+.++.......-...++|| .+.-
T Consensus 462 ~nmkhsgylyaig~n-vwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglqgg~~ffnavke 540 (1218)
T KOG3543|consen 462 PNMKHSGYLYAIGRN-VWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAVKE 540 (1218)
T ss_pred CccccceeehhhhhH-HHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccccchHHHHHhcc
Confidence 345668999965544 39999999999987544433222111111223334567777665532211123344444 3432
Q ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 96 DGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 96 ~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
|-+..|..+++.++.-|++|+-+|..++
T Consensus 541 ----gdtvifasddeqdr~lwvqamyratgqs 568 (1218)
T KOG3543|consen 541 ----GDTVIFASDDEQDRHLWVQAMYRATGQS 568 (1218)
T ss_pred ----CceEEeccCchhhhhHHHHHHHHhhCCc
Confidence 7889999999999999999999998765
No 116
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=96.73 E-value=0.00093 Score=76.62 Aligned_cols=95 Identities=15% Similarity=0.251 Sum_probs=64.7
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceE-EEEe
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLT-VLFP 95 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~f-vit~ 95 (724)
....|+| |..+.+...+.|+|||||++.+.+.||+.+.+........+.+.-+.+.+.. .....| .++.
T Consensus 247 e~~ekSg--y~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~~--------~~s~~fqli~~ 316 (936)
T KOG0248|consen 247 ETMEKSG--YWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQQ--------GAAYAFQLITS 316 (936)
T ss_pred chhhccc--chhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeecc--------chhHHhhhhhh
Confidence 6678899 6557777788999999999999999999877654222222222222222222 112223 3332
Q ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 96 ~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
...|+|-++++--..+|++.|+.+|.
T Consensus 317 ----t~~~~~~~~s~~lt~dw~~iL~~~iK 342 (936)
T KOG0248|consen 317 ----TDKMNFMTESERTTHDWVTILSAAIK 342 (936)
T ss_pred ----ceeEEEeccChhhhhhhHHHHHHHHH
Confidence 46899999999999999999999885
No 117
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.72 E-value=0.0082 Score=53.03 Aligned_cols=86 Identities=21% Similarity=0.305 Sum_probs=54.2
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCC-CcceeeccCCcceEEEEecC
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVVREDKKLLTVLFPDG 97 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~-~~sv~~~~~Kk~~fvit~~~ 97 (724)
+++.|.++ |+.+. .+++|=++|+..--.+|-|..... .-+.|.++. +..+... ..+.|++.+|
T Consensus 1 Il~~g~v~--Kr~gl--f~kkR~LiLTd~PrL~yvdp~~~~---------~KgeIp~s~~~l~v~~~-~~~~F~I~Tp-- 64 (89)
T cd01262 1 ILKIGAVK--KRKGL--FAKKRQLILTNGPRLIYVDPVKKV---------VKGEIPWSDVELRVEVK-NSSHFFVHTP-- 64 (89)
T ss_pred Cceeeeee--ehhcc--ccceeeEEEecCceEEEEcCCcCe---------EEeEecccccceEEEEe-cCccEEEECC--
Confidence 45778555 44332 479999999976444444443222 223466665 3333333 3345566676
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 98 RDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 98 ~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
+|+|+|. |-......|+.+|..+
T Consensus 65 --~rty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 65 --NKVYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred --CceEEEE-CCCCCHHHHHHHHHHH
Confidence 7999995 5568999999999876
No 118
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.54 E-value=0.029 Score=50.64 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=59.2
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecC
Q 004901 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (724)
..+++|.|...+. =+-|++.|-...|.|-|-.++.. .-.-.+.+..+.+... ....++.|.+....
T Consensus 3 eLlleg~l~~~~~------~~eR~vFLFe~~ll~~K~~~~~y---~~K~~i~~~~l~i~e~-----~~~d~~~F~v~~~~ 68 (97)
T cd01222 3 DLLLEGRFREHGG------GKPRLLFLFQTMLLIAKPRGDKY---QFKAYIPCKNLMLVEH-----LPGEPLCFRVIPFD 68 (97)
T ss_pred ceeeeceEEeecC------CCceEEEEecccEEEEEecCCee---EEEEEEEecceEEecC-----CCCCCcEEEEEecC
Confidence 4578886652222 24588889999998988644321 1111122333333331 11236778876654
Q ss_pred CCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 98 RDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 98 ~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
...+.|.|+|.|.++.+.|+++|+.++
T Consensus 69 ~p~~~~~l~A~s~e~K~~W~~~i~~~i 95 (97)
T cd01222 69 DPKGALQLTARNREEKRIWTQQLKRAM 95 (97)
T ss_pred CCceEEEEEecCHHHHHHHHHHHHHHh
Confidence 444799999999999999999999886
No 119
>KOG3531 consensus Rho guanine nucleotide exchange factor CDEP [Signal transduction mechanisms]
Probab=96.49 E-value=0.0011 Score=77.51 Aligned_cols=93 Identities=23% Similarity=0.333 Sum_probs=66.8
Q ss_pred EeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCc
Q 004901 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGR 101 (724)
Q Consensus 22 eG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr 101 (724)
+|||+ .|-.....|+|-|.|...-+|+|||+..+..+ ..+++|-++.+...... ....|-+.|.+..+ ..
T Consensus 927 sg~Ll--rkfknssgwqkLwvvft~fcl~fyKS~qD~~~----laslPlLgysvs~P~~~-d~i~K~~vfkl~fk---~h 996 (1036)
T KOG3531|consen 927 SGYLL--RKFKNSSGWQKLWVVFTNFCLFFYKSHQDSEP----LASLPLLGYSVSIPAEP-DPIQKDYVFKLKFK---SH 996 (1036)
T ss_pred hHHHH--HHhhccccceeeeeeecceeeEeecccccccc----cccccccccccCCCCCC-CCcchhheeeeehh---hh
Confidence 45554 33333457999999999999999999888763 33456777776653321 12345567776654 67
Q ss_pred eEEEEeCCHHHHHHHHHHHHHHH
Q 004901 102 AFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 102 ~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
+|+|.|++.-..++|+..|+.+-
T Consensus 997 vyffraes~yt~~rw~evi~~a~ 1019 (1036)
T KOG3531|consen 997 VYFFRAESYYTFERWMEVITDAP 1019 (1036)
T ss_pred HHHHhhhhhhhhhhHHHHhhcCC
Confidence 99999999999999999998654
No 120
>PF15408 PH_7: Pleckstrin homology domain
Probab=96.49 E-value=0.0011 Score=57.37 Aligned_cols=88 Identities=11% Similarity=0.116 Sum_probs=57.3
Q ss_pred EeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-----cC---CcceEEE
Q 004901 22 SGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-----ED---KKLLTVL 93 (724)
Q Consensus 22 eG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~-----~~---Kk~~fvi 93 (724)
+||||...+|. -+|||.+|++..|.+|.++.. + .|..+.+......++- .. .-..|-|
T Consensus 1 EGYLY~~E~~s----i~rRF~~L~~K~~~~~~~KGG------~----~L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~ 66 (104)
T PF15408_consen 1 EGYLYRDEDSS----IQRRFVMLRSKQFNMYEDKGG------Q----YLCSFQLSSSVVSHPMVNFSQAVPNLGINAFGF 66 (104)
T ss_pred CCeEEEeccch----HHHHHHhhhhceeEEecccCC------c----eeeeeehhhhhhhcccccccccCCCCCeeEEEE
Confidence 69999888775 578999999999999988643 2 1222333221111110 01 1123333
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
-..+.+++..-+.|++.+.++.|++++.+-
T Consensus 67 L~~~~~~~~~~~FA~S~~~~~~Wi~~mN~~ 96 (104)
T PF15408_consen 67 LMYSPSRRHVQCFASSKKVCQSWIQVMNSP 96 (104)
T ss_pred EEecCCcchhhhhhhHHHHHHHHHHHhcCh
Confidence 333567888899999999999999999743
No 121
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=96.46 E-value=0.043 Score=51.62 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=55.7
Q ss_pred eeeeeccCC---CCCCcEEEEEEEeC--CeEEEEcCCCCCCCCC-CceeeeeeCcEEcCCCcceeeccC----CcceEEE
Q 004901 24 PLFISSKGI---GWKSWKKRWFILTR--TSLVFFKNDPSALPQR-GGEVNLTLGGIDLNNSGSVVVRED----KKLLTVL 93 (724)
Q Consensus 24 ~L~l~Kkg~---~~k~WKKRWFVL~~--~~L~yYKd~~~~~p~~-~~~~~l~L~~I~L~~~~sv~~~~~----Kk~~fvi 93 (724)
|||+..++. .....++|||.|.. ..|+|+..++...... +..-.+.+..+.-.......+... ..++++|
T Consensus 14 ~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~si~i 93 (123)
T PF12814_consen 14 WLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKSIII 93 (123)
T ss_pred EEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceEEEE
Confidence 666543332 24578999999987 5777776544322111 111112232222111111111111 2233444
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
. ..+|+.-|-|.+.++.+-|+.+|+..++
T Consensus 94 ~---t~~R~L~l~a~s~~~~~~W~~aL~~L~~ 122 (123)
T PF12814_consen 94 V---TPDRSLDLTAPSRERHEIWFNALRYLLQ 122 (123)
T ss_pred E---cCCeEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 3 2379999999999999999999998765
No 122
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=96.23 E-value=0.006 Score=55.45 Aligned_cols=94 Identities=20% Similarity=0.331 Sum_probs=61.5
Q ss_pred ceEEEeeeeeeccCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee---eccCCcceEEE
Q 004901 18 TVFKSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg~~-~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~---~~~~Kk~~fvi 93 (724)
.++..| |+.|-|+. ...|++|||.|-.+.|-+|....... +++ +.+.....|. ..-....|.++
T Consensus 2 DcIvhG--yi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~----~eL------i~M~~i~~V~~e~~~iK~~~CI~i 69 (116)
T cd01240 2 DCIVHG--YIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANK----PEL------ITMDQIEDVSVEFQQIKEENCILL 69 (116)
T ss_pred ceEEee--ehhhhCCHHHHHHHHHHheeCcceeeecccccccC----CcE------EEeehhhhcchhheeeccCceEEE
Confidence 467889 44465543 66799999999999999975443322 221 1111111111 11122345666
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
..+ +++.+++.+++..+..+|..-|+.+..
T Consensus 70 k~k--~~~k~vlt~~d~i~l~qW~~elr~a~r 99 (116)
T cd01240 70 KIR--DEKKIVLTNSDEIELKQWKKELRDAHR 99 (116)
T ss_pred EEc--CCceEEEecCCcHHHHHHHHHHHHHHH
Confidence 554 478999999999999999999998865
No 123
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms]
Probab=96.17 E-value=0.0025 Score=78.53 Aligned_cols=161 Identities=15% Similarity=0.230 Sum_probs=122.8
Q ss_pred ccccchHHH---hhhcCCCcHHHHH-HHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc---CC----CCCCCccc
Q 004901 165 VVGRPILLA---LEDIDGGPSFLEK-ALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT---EF----SADEDAHV 233 (724)
Q Consensus 165 vFG~pL~~l---l~~~~~VP~il~~-~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~---~~----~~~~d~h~ 233 (724)
++|+++..+ .......|.++.+ |.......|....|+||.++....+...+..++.... .+ ....++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 888888665 2223457888888 7777778999999999999998888888888876321 11 11335566
Q ss_pred hhhhHHHHHhhC--CCCCCChhhHHHHH----------------HHHhcCCHHHHH-------HHHHHHHHc----cCCh
Q 004901 234 IGDCVKHVLREL--PSSPVPASCCTALL----------------EAYKIDRKEARI-------SAMRSAILE----TFPE 284 (724)
Q Consensus 234 vA~lLK~fLReL--PePLlp~~l~~~ll----------------~~~~~~~~~~ri-------~~l~~lIl~----~LP~ 284 (724)
+.+.++.|+|.+ |.+...+..|..++ .........+++ ..+.. +.. .+|.
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~-~~~~e~~~vP~ 620 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFMELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSE-LARYEPSTVPF 620 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhhcccceeeeeccccchhhccccCccccccccccccHHHHH-hhccCCCCCCH
Confidence 778999999999 99988888888887 333333444555 56665 345 8999
Q ss_pred hHHHHHHHHHHHHHHhhcccccC-CCCc-cchhhhccc----cccCCC
Q 004901 285 PNRRLLQRILRMMHTISSHAHEN-RMTP-SAVAACMAP----LLLRPL 326 (724)
Q Consensus 285 ~n~~lL~~Ll~~L~~V~~~s~~N-kMt~-~NLAivfgP----~Llr~~ 326 (724)
....+|.++..|+.+|......| -|+. .||+.+|++ +++...
T Consensus 621 i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~~~v~l~~~ 668 (918)
T KOG1453|consen 621 ILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGDALVLLSTP 668 (918)
T ss_pred HHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCccceecCCC
Confidence 99999999999999999988888 8888 999999999 555543
No 124
>PLN02866 phospholipase D
Probab=96.14 E-value=0.035 Score=67.89 Aligned_cols=88 Identities=19% Similarity=0.330 Sum_probs=55.4
Q ss_pred CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCC--Ccceee------ccCCcceEEEEecCCCCceEEEE
Q 004901 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN--SGSVVV------REDKKLLTVLFPDGRDGRAFTLK 106 (724)
Q Consensus 35 k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~--~~sv~~------~~~Kk~~fvit~~~~~gr~y~fq 106 (724)
.+|.||||||+.+.|.|.+++.+..+. .+.+......... ...+.. ...-++.|.|+.. +|.+.|.
T Consensus 216 ~~w~k~w~v~k~~~l~~~~~p~~~~~~---~v~lfD~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~i~~~---~r~l~l~ 289 (1068)
T PLN02866 216 DNWQKVWAVLKPGFLALLEDPFDAKPL---DIIVFDVLPASNGNGEGQISLAKEIKERNPLRFGFKVTCG---NRSIRLR 289 (1068)
T ss_pred CchheeEEEEeccEEEEEecCCCCcee---EEEEEecccccccCCCcceeecccccccCCCcceEEEecC---ceEEEEE
Confidence 469999999999999999887654411 1111110000011 111111 0122456666543 7899999
Q ss_pred eCCHHHHHHHHHHHHHHHhcCC
Q 004901 107 AETSEDLYEWKTALELALAQAP 128 (724)
Q Consensus 107 AdSeeE~~eWi~AL~~ai~~ap 128 (724)
|.+...+.+|+.+|+.+..+.|
T Consensus 290 ~~s~~~~~~w~~ai~~~~~~~~ 311 (1068)
T PLN02866 290 TKSSAKVKDWVAAINDAGLRPP 311 (1068)
T ss_pred ECCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999975443
No 125
>PTZ00283 serine/threonine protein kinase; Provisional
Probab=96.12 E-value=0.017 Score=66.69 Aligned_cols=37 Identities=14% Similarity=0.287 Sum_probs=30.9
Q ss_pred CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 87 Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.++.|.+.. .+|+.+.|+|.+.++++.||.+|+.++.
T Consensus 454 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (496)
T PTZ00283 454 AAHVFAVAF--KTGRRLLFQARSDPERDAWMQKIQSVLG 490 (496)
T ss_pred CCcEEEEEe--cCCcEEEEecCCchhHHHHHHHHHHhcC
Confidence 456665543 4599999999999999999999999875
No 126
>KOG1739 consensus Serine/threonine protein kinase GPBP [Signal transduction mechanisms; Defense mechanisms]
Probab=95.78 E-value=0.01 Score=66.15 Aligned_cols=94 Identities=20% Similarity=0.334 Sum_probs=61.2
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCC
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~ 98 (724)
+...| ++.|.-.....|+-|||+|..+.|.||++...... |+ -+.|.+..........+-..|++.+-
T Consensus 24 ~e~~G--~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~h--Gc-----Rgsi~l~ka~i~ahEfDe~rfdIsvn--- 91 (611)
T KOG1739|consen 24 VERCG--VLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEH--GC-----RGSICLSKAVITAHEFDECRFDISVN--- 91 (611)
T ss_pred hhhcc--eeeeeecccccccceEEEEcccchhhhhhhhhhhc--cc-----ceeeEeccCCcccccchhheeeeEec---
Confidence 44455 33355555668999999999999999999876542 22 23344443322112223333344332
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 99 DGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 99 ~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
..+.++.|.+...++.|+.+|.-.-.
T Consensus 92 -~nv~~lra~~~~hr~~w~d~L~wmk~ 117 (611)
T KOG1739|consen 92 -DNVWYLRAQDPDHRQQWIDALEWMKT 117 (611)
T ss_pred -cceeeehhcCcHHHHHHHHHHHHHhh
Confidence 57899999999999999999986654
No 127
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=95.16 E-value=0.29 Score=45.13 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=55.2
Q ss_pred eEEEeeeeeeccCCCCCCc-EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-C--CcceEEEE
Q 004901 19 VFKSGPLFISSKGIGWKSW-KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-D--KKLLTVLF 94 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~W-KKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~-~--Kk~~fvit 94 (724)
.+++|-|..... .+.| +.|+|.|-++.|+|.|...-....-.-...+.+..+.+.+...-.... . -+..|.|.
T Consensus 2 li~~Gel~~~s~---~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~ 78 (109)
T cd01224 2 LFLQGEATRQKQ---NKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIY 78 (109)
T ss_pred ceEeeeEEEEec---ccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEE
Confidence 467785543331 1223 579999999999999854321110001111233333333321100000 1 13456555
Q ss_pred ecCCCCceEEEEeCCHHHHHHHHHHHHH
Q 004901 95 PDGRDGRAFTLKAETSEDLYEWKTALEL 122 (724)
Q Consensus 95 ~~~~~gr~y~fqAdSeeE~~eWi~AL~~ 122 (724)
.. ..+..|.|+|.|+++...|+.|+..
T Consensus 79 ~~-~~~~~~~f~~Kt~e~K~~Wm~a~~~ 105 (109)
T cd01224 79 SE-STDEWYLFSFKSAERKHRWLSAFAL 105 (109)
T ss_pred Ec-CCCeEEEEEECCHHHHHHHHHHHHH
Confidence 43 3357899999999999999999864
No 128
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=94.96 E-value=0.03 Score=63.97 Aligned_cols=105 Identities=20% Similarity=0.275 Sum_probs=69.8
Q ss_pred CCCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce-eeccCCcceE
Q 004901 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-VVREDKKLLT 91 (724)
Q Consensus 13 ~~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv-~~~~~Kk~~f 91 (724)
-.+++.++|+|.|+ |-......-..||++|-++.|.|.+-.. ..+ +..+.. -..+.+..+... .......+.|
T Consensus 266 V~PsreLiKEG~l~--Kis~k~~~~qeRylfLFNd~~lyc~~r~-~~~--~~k~~~-r~~~s~~~~~v~~~~~~~~~~tF 339 (623)
T KOG4424|consen 266 VSPSRELIKEGQLQ--KISAKNGTTQERYLFLFNDILLYCKPRK-RLP--GSKYEV-RARCSISHMQVQEDDNEELPHTF 339 (623)
T ss_pred cCcHHHHhhcccee--eeeccCCCcceeEEEEehhHHHhhhhhh-hcc--cceecc-ceeeccCcchhcccccccCCceE
Confidence 46778899999766 5555556789999999999888887654 221 111110 111222222221 1112335678
Q ss_pred EEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 92 vit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
+++-+ .|..-|+|.|+++..+|+++|+.+|..
T Consensus 340 ~~~G~---~r~vel~a~t~~ek~eWv~~I~~~Id~ 371 (623)
T KOG4424|consen 340 ILTGK---KRGVELQARTEQEKKEWVQAIQDAIDK 371 (623)
T ss_pred EEecc---cceEEeecCchhhHHHHHHHHHHHHHH
Confidence 87753 588999999999999999999999964
No 129
>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain. Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.91 E-value=0.3 Score=46.11 Aligned_cols=80 Identities=16% Similarity=0.175 Sum_probs=49.2
Q ss_pred CcEEEEEEEeCCeEEEEcCCCCCCCCCCceeee----eeCcEEcCCCcceee-------ccCCcceEEEEe-cCCCC--c
Q 004901 36 SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVV-------REDKKLLTVLFP-DGRDG--R 101 (724)
Q Consensus 36 ~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l----~L~~I~L~~~~sv~~-------~~~Kk~~fvit~-~~~~g--r 101 (724)
.-+.+|+.|-.+.|.|-|-+. +..+.+ +...+.+..+..... ....++.|.++. ....| +
T Consensus 26 ~~~~vylfLFnDlLl~tkkK~------~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~ 99 (125)
T cd01221 26 KARTIYLFLFNDLLLITKKKL------GSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQA 99 (125)
T ss_pred cCCcEEEEEecceEEEEEecC------CCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeeccCCCCEE
Confidence 346789999999999987543 222222 233344443221100 012356676653 22223 5
Q ss_pred eEEEEeCCHHHHHHHHHHHH
Q 004901 102 AFTLKAETSEDLYEWKTALE 121 (724)
Q Consensus 102 ~y~fqAdSeeE~~eWi~AL~ 121 (724)
.+.|+|+|+.|+.+||.||.
T Consensus 100 el~L~a~S~sdr~rWi~Al~ 119 (125)
T cd01221 100 ELLLSADSQSDRERWLSALA 119 (125)
T ss_pred EEEEECCCHHHHHHHHHhcC
Confidence 69999999999999999984
No 130
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=94.72 E-value=0.77 Score=42.76 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=54.3
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCC--CceEEEEeCCHHHHH
Q 004901 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD--GRAFTLKAETSEDLY 114 (724)
Q Consensus 37 WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~--gr~y~fqAdSeeE~~ 114 (724)
=+.|-+.|-...|+|-|-..... ..+......-..|.++..+.....++..+.|.+...++. ..+|.+||.|.++.+
T Consensus 24 ~~eR~vFLFe~~lvfsk~~~~~~-~~~~~~Y~yK~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~ 102 (114)
T cd01232 24 GRERRVFLFEQSIIFAKEVKKKK-QFGNPKYIYKSKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQ 102 (114)
T ss_pred CceeEEEEeeceEEEEEEeccCC-CCCceeEEEecceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHH
Confidence 36777788888888888644321 112221222233444332221122334566777665543 479999999999999
Q ss_pred HHHHHHHHHHh
Q 004901 115 EWKTALELALA 125 (724)
Q Consensus 115 eWi~AL~~ai~ 125 (724)
.|+..|+.++.
T Consensus 103 ~W~~~I~~il~ 113 (114)
T cd01232 103 EWVKKIREILQ 113 (114)
T ss_pred HHHHHHHHHhh
Confidence 99999998874
No 131
>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.62 E-value=0.14 Score=45.81 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=56.8
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCC---CCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS---ALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~---~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~ 95 (724)
.+++|+|.....|. =|.|=|.|-++.|+|-+-... ...+......++|..+.+.... |.+.
T Consensus 3 Lv~eg~lvel~~~~----rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~~-----------~~~~- 66 (96)
T cd01228 3 LVKDSFLVELVEGS----RKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSEP-----------FRIH- 66 (96)
T ss_pred ccccceeeeehhCC----CcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecchh-----------hhcc-
Confidence 57889776433332 477888899998888775421 1112233445566555554320 2221
Q ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 96 DGRDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 96 ~~~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
.++++.|+|.|.|..|+.+|+.+|+..
T Consensus 67 -~~~~KSf~~~asS~~Er~eW~~hI~~~ 93 (96)
T cd01228 67 -NKNGKSYTFLLSSDYERSEWRESIQKL 93 (96)
T ss_pred -ccCCceEEEEecCHHHHHHHHHHHHHH
Confidence 345899999999999999999999865
No 132
>PF15406 PH_6: Pleckstrin homology domain
Probab=94.33 E-value=0.093 Score=47.95 Aligned_cols=69 Identities=20% Similarity=0.328 Sum_probs=45.7
Q ss_pred EEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHH
Q 004901 40 RWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTA 119 (724)
Q Consensus 40 RWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~A 119 (724)
-|..-+|.-|.||....+... |-+.|.|.....+......+ |.+.. +|..+.|+|.+..|++.|+.+
T Consensus 42 AwAsqTGKGLLF~~K~~dka~--------P~GiinLadase~~~~g~~k--F~f~~---~G~khtF~A~s~aERD~Wv~~ 108 (112)
T PF15406_consen 42 AWASQTGKGLLFFSKAEDKAS--------PSGIINLADASEPEKDGSNK--FHFKI---KGHKHTFEAASAAERDNWVAQ 108 (112)
T ss_pred hhhhccCceEEEEeccccccC--------CcceEehhhccccccCCCce--EEEEe---CCceeeeecCCHHHhccHHHH
Confidence 466667766666653333221 44567777766554444444 44443 389999999999999999999
Q ss_pred HH
Q 004901 120 LE 121 (724)
Q Consensus 120 L~ 121 (724)
|.
T Consensus 109 lk 110 (112)
T PF15406_consen 109 LK 110 (112)
T ss_pred hh
Confidence 86
No 133
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=94.19 E-value=0.01 Score=67.51 Aligned_cols=174 Identities=20% Similarity=0.190 Sum_probs=111.5
Q ss_pred cccccchHHHhh-hcCCCcH-HHHHHHHHHHh---cC--CCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccchhh
Q 004901 164 LVVGRPILLALE-DIDGGPS-FLEKALRFLEK---FG--TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGD 236 (724)
Q Consensus 164 ~vFG~pL~~ll~-~~~~VP~-il~~~i~~L~~---~G--l~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~ 236 (724)
..||.-|..+.- -++.||. .+.+||..+.. ++ +...|.|++..+.... .+...|....|+.++..
T Consensus 208 ~~~gl~ltr~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~D~gae--------~d~~af~~p~di~v~S~ 279 (670)
T KOG1449|consen 208 LNCGLVLTRMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVEDEGAE--------VDGEAFRWPSDIVVESW 279 (670)
T ss_pred ccccceecceeeccccccchhhhccchhccccchhccCCcccCcceecccccccc--------ccccccCCccceeeecc
Confidence 445554433322 2567888 77788876665 22 4455777766543211 12234444578899999
Q ss_pred hHHHHHhhCCCCCCChhhHHHHHHHHhcCC-HHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchh
Q 004901 237 CVKHVLRELPSSPVPASCCTALLEAYKIDR-KEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (724)
Q Consensus 237 lLK~fLReLPePLlp~~l~~~ll~~~~~~~-~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 315 (724)
+++-|.|.+|.|+.. .++...+ ..+.+..++- .+..+++.|+.+-+.|..||...+.-. .+++
T Consensus 280 d~dp~s~Q~~pp~~~--------~~~~k~Ds~s~sv~~~~~-~~~~~se~~~r~a~~lse~ft~~~~~~-------~s~~ 343 (670)
T KOG1449|consen 280 DMDPYSRQLPPPYPK--------EAFEKEDSLSESVESLRF-SLETMSEAHYRTAKFLSEHFTRLCKSK-------KSLA 343 (670)
T ss_pred ccChhhhhcCCCCcc--------cccccccCcccceeeecc-ccccCCcccchHhhhhchhhhhhcccc-------ccce
Confidence 999999999999544 2222222 2333444443 446899999999999999998877633 8999
Q ss_pred hhccccccCCCCCCCCcccc-ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 316 ACMAPLLLRPLLAGECELED-DFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 316 ivfgP~Llr~~~~~~~~~ed-~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
|++.|+++|++.. ++. ++-..++ .+....+..+.|++....|..+.
T Consensus 344 I~~~~~~~r~ppt----L~~~~~h~~~~-----------~~~~~~~~~~~~e~s~~~~~~~i 390 (670)
T KOG1449|consen 344 IVWSPNLFRPPPT----LNGADTHLLSG-----------LNVHTAICDFFIENSESLFVNDI 390 (670)
T ss_pred eecCCCCCCCCCC----CCchhhhhccc-----------CCcceeecccchhhhhhhhhccc
Confidence 9999999999852 221 1111111 12233567888999999988766
No 134
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.58 E-value=0.52 Score=52.68 Aligned_cols=111 Identities=20% Similarity=0.261 Sum_probs=84.6
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCC
Q 004901 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGM 664 (724)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~ 664 (724)
..||+.|..+..+|. ||+.=+-.|..++.+|+....+-.+|.--|++++++|++|+++...|-..+.--.+ .+
T Consensus 347 sqlen~k~~~e~~~~-e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~------kl 419 (493)
T KOG0804|consen 347 SQLENQKQYYELLIT-EADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRG------KL 419 (493)
T ss_pred HHHHhHHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH------HH
Confidence 478888888877774 67777888999999999999999999999999999999999999999876643222 12
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 665 DSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (724)
-.....+=+.+...++.|..|++||.+|-+.|--|..-
T Consensus 420 ~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf~le~qqkl 457 (493)
T KOG0804|consen 420 KELEEREKEALGSKDEKITDLQEQLRDLMFFLEAQQKL 457 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHheehhhhhhh
Confidence 22223334456677888888888888888777654443
No 135
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms]
Probab=93.51 E-value=0.017 Score=65.65 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=51.3
Q ss_pred HHHHHHhhcccccCCCCccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 004901 294 LRMMHTISSHAHENRMTPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFD 373 (724)
Q Consensus 294 l~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~ 373 (724)
++||..|+.++....|.+.|||+||+|+|+|.+....--.+ ...|+ ++........-+++|++.|-+.||.
T Consensus 1 ~rHls~va~~~s~tnmhA~Nla~vwapnllrskeies~lcs---~~~Gd------aAf~avq~qsvV~EfilnhvDvlF~ 71 (670)
T KOG1449|consen 1 HRHLSSVALGPSRTNMHAINLAEVWAPNLLRSKEIESSLCS---HLWGD------AAFSAVQAQSVVSEFILNHVDVLFL 71 (670)
T ss_pred CcchhhhhccchhhHHHHhhHHHhhhhhhHHHHHHHHhhhc---ccccc------HHHHHHHhhhhhhhhcccccceecC
Confidence 36899999999999999999999999999997732110000 01122 2223333344578999999999998
Q ss_pred CCc
Q 004901 374 DES 376 (724)
Q Consensus 374 ~~~ 376 (724)
...
T Consensus 72 ~~a 74 (670)
T KOG1449|consen 72 PTA 74 (670)
T ss_pred CcC
Confidence 654
No 136
>PF15404 PH_4: Pleckstrin homology domain
Probab=93.29 E-value=0.37 Score=48.49 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=26.9
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCC
Q 004901 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP 56 (724)
Q Consensus 21 KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~ 56 (724)
++|+||.+.+. ...|+++|+||..+.|+.|..-.
T Consensus 1 ~sG~LY~K~~k--hs~F~~~~vvL~~G~Li~f~~~~ 34 (185)
T PF15404_consen 1 MSGYLYQKPRK--HSTFKKYFVVLIPGFLILFQLFK 34 (185)
T ss_pred CCceeeecCCC--CCCceEEEEEEeCCEEEEEEEEe
Confidence 47999954443 46699999999999999998743
No 137
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=92.45 E-value=3.5 Score=43.21 Aligned_cols=70 Identities=33% Similarity=0.376 Sum_probs=55.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER---RLALEQDVSRLQEQLQAERDLRAALEVGL 651 (724)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---r~~Le~~V~~L~~~L~~e~~~~~~le~~l 651 (724)
.+||.|...+..|..+|...-|.=..+|+-+++-+.++-.. -..|++.|.+++..|++.+.-..-++..|
T Consensus 10 ~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999876666667777776666655444 44588999999999999988888888877
No 138
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.98 E-value=1.7 Score=41.66 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=52.4
Q ss_pred EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEeCCHHHHHHHH
Q 004901 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (724)
Q Consensus 38 KKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi 117 (724)
+.|...|-...+.|.|-..+............-..|.++..+......+....|.+..... ..+|.+||.|.+..+.|+
T Consensus 30 ~eRhVFLFE~~viF~K~~~~~~~~~~~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~-~~~yilqA~t~e~K~~Wv 108 (133)
T cd01227 30 MQRHIFLHEKAVLFCKKREENGEGEKAPSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAR-EEVYILQAPTPEIKAAWV 108 (133)
T ss_pred ceeEEEEecceEEEEEEeccCCCCCcceeEEEeeeEEeecccccccCCCCccEEEEEeCCC-CcEEEEEcCCHHHHHHHH
Confidence 5688888888888887653321111111112222333333221111122345577765443 469999999999999999
Q ss_pred HHHHHHHh
Q 004901 118 TALELALA 125 (724)
Q Consensus 118 ~AL~~ai~ 125 (724)
..|+..+.
T Consensus 109 ~~I~~iL~ 116 (133)
T cd01227 109 NEIRKVLT 116 (133)
T ss_pred HHHHHHHH
Confidence 99999885
No 139
>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=91.94 E-value=0.91 Score=41.87 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=56.5
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEeCCHHHHHHH
Q 004901 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (724)
Q Consensus 37 WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eW 116 (724)
=..||++|-...|.+....+... ...-...+++.++.++.... .+..++.|.|+- ..--...+.|.+.+|+.+|
T Consensus 28 ~~eRyLvLFp~~LlilS~s~r~s-Gf~yqGkLPL~~i~v~~lEd---~e~~~~aFeI~G--~li~~i~v~C~~~~e~~~W 101 (111)
T cd01225 28 KRERYLVLFPNVLLMLSASPRMS-GFIYQGKLPLTGIIVTRLED---TEALKNAFEISG--PLIERIVVVCNNPQDAQEW 101 (111)
T ss_pred cceeEEEEcCceEEEEEcCCCcc-ceEEeeeecccccEEechHh---ccCccceEEEec--cCcCcEEEEeCCHHHHHHH
Confidence 36899999999999988754332 11223446778887775222 134456788763 3345688899999999999
Q ss_pred HHHHHHHH
Q 004901 117 KTALELAL 124 (724)
Q Consensus 117 i~AL~~ai 124 (724)
+..|++-+
T Consensus 102 l~hL~~~~ 109 (111)
T cd01225 102 VELLNANN 109 (111)
T ss_pred HHHHHhhc
Confidence 99998643
No 140
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.89 E-value=1.3 Score=40.33 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=46.7
Q ss_pred EEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEeCCHHHHHHHH
Q 004901 38 KKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWK 117 (724)
Q Consensus 38 KKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi 117 (724)
++..|.|-++.|+|-.-.... +.......+|..+.+.+... ...-|+.+.++++ .+.+.+||+|.++..+|+
T Consensus 20 ~rv~~FLfND~Lvva~~~~~~--ky~~~~~~~L~~i~V~ni~D--~~~~kNafki~t~----~~s~i~qaes~~~K~eWl 91 (100)
T cd01226 20 QRVMLFLLNDRLIVGNINAAG--KYVMESTYSLNSVAVVNVKD--RENAKKVLKLLIF----PESRIYQCESARIKTEWF 91 (100)
T ss_pred ceEEEEEeccEEEEEEecccc--eEEEEEEEehHHeEEEecCC--CcCcCceEEEEeC----CccEEEEeCCHHHHHHHH
Confidence 445577777777766443211 11223334444444433211 0112334444555 578999999999999999
Q ss_pred HHHHHHH
Q 004901 118 TALELAL 124 (724)
Q Consensus 118 ~AL~~ai 124 (724)
..|+++.
T Consensus 92 ~~le~a~ 98 (100)
T cd01226 92 EELEQAK 98 (100)
T ss_pred HHHHHHh
Confidence 9999886
No 141
>KOG3549 consensus Syntrophins (type gamma) [Extracellular structures]
Probab=91.82 E-value=0.29 Score=52.93 Aligned_cols=102 Identities=16% Similarity=0.320 Sum_probs=68.1
Q ss_pred CCCCceEEEeeeeeeccC---CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcE-------EcCCCcceee
Q 004901 14 GASNTVFKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGI-------DLNNSGSVVV 83 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg---~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I-------~L~~~~sv~~ 83 (724)
+....++.-| |...+- ..+..++.||..|+|..+|.|..++-.. ..++.....+ .+-... ..
T Consensus 276 ~v~~qivyMG--Wvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t----~dw~rAe~ty~vye~mfki~Kds--d~ 347 (505)
T KOG3549|consen 276 AVGEQIVYMG--WVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNT----ADWSRAEVTYKVYETMFKIVKDS--DT 347 (505)
T ss_pred CccceEEEee--eccccccCcccccccCceeEEecCcEEEEEcCCCcch----hhhhhhhhhHHHHHHHHHHhccc--cc
Confidence 4566788889 544432 3467789999999999999998765322 1111111111 111111 12
Q ss_pred ccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 84 ~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.+.+++||.+... .|...||..+...|+.+|-++.+.|+-
T Consensus 348 ~D~R~~CF~~qs~--~ge~~yfsVEl~seLa~wE~sfq~Atf 387 (505)
T KOG3549|consen 348 VDSRQHCFLLQSS--GGEPRYFSVELRSELARWENSFQAATF 387 (505)
T ss_pred cccccceEEEEcC--CCCceEEEEehhhHHHHHHHHHhhHHh
Confidence 2456789988753 478999999999999999999988763
No 142
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.84 E-value=2.4 Score=45.14 Aligned_cols=125 Identities=21% Similarity=0.290 Sum_probs=68.7
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhh-----hhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004901 579 EEELAIQRLEITKNDLRHRIAKEAR-----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (724)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~ 653 (724)
+-...|+++-..+..|+.+|.+... .....+. +......++++-..|++.+.+++++++..+..-..+...+..
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~~~~~~~~-~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~ 102 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIEEILESDSNGQLLEIQQ-LKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQ 102 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888999999987665 2111111 122233445555667777777777777777766666666654
Q ss_pred CCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004901 654 SSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (724)
Q Consensus 654 ~~~~~~----~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~ 704 (724)
....+. .-........++..++...+..+..|+..+..-+.++.++-..-+
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r~~l~~~l~~if 157 (302)
T PF10186_consen 103 RRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRRRQLIQELSEIF 157 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333222 001112223334444444555555555555555555555544433
No 143
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=90.72 E-value=1.6 Score=44.21 Aligned_cols=72 Identities=32% Similarity=0.333 Sum_probs=49.9
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHH----HHHHHHH
Q 004901 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE----IALAEAD 681 (724)
Q Consensus 606 ~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~e----ia~~E~~ 681 (724)
+.||+.-++|.+--+.-|..||+|++.|+-|=.. -+.+.+. .+..=.+..+++|.| |-.||+|
T Consensus 13 ~~LQaa~ekRE~lE~rLR~~lE~EL~~lr~qq~~-----------~~~~~~~--~~~~~~~~L~~~LrEkEErILaLEad 79 (205)
T PF12240_consen 13 AQLQAACEKREQLERRLRTRLERELESLRAQQRQ-----------GNSSGSS--SPSNNASNLKELLREKEERILALEAD 79 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------CCCCCCC--CCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999998888999999999988766321 1111111 222334455666655 7789999
Q ss_pred HHHHHHHHH
Q 004901 682 VARLKQKVA 690 (724)
Q Consensus 682 v~~le~~~~ 690 (724)
+++.||+-.
T Consensus 80 ~~kWEqkYL 88 (205)
T PF12240_consen 80 MTKWEQKYL 88 (205)
T ss_pred HHHHHHHHH
Confidence 999998863
No 144
>KOG1737 consensus Oxysterol-binding protein [Lipid transport and metabolism]
Probab=90.61 E-value=0.17 Score=60.84 Aligned_cols=90 Identities=23% Similarity=0.361 Sum_probs=57.1
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCC
Q 004901 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (724)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~ 99 (724)
-.+|||+ |.....+.|.+|||+|.++.|.||++........++ .+.+...- ......+-+... .+.
T Consensus 78 ~~~g~l~--k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~-------~~~~~~a~---i~~~~~~~~~~~-~~~- 143 (799)
T KOG1737|consen 78 SLEGILL--KWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGG-------GINLVTAW---IQNGERMDICSV-DGS- 143 (799)
T ss_pred cccceee--ccccccCCcccceEEecCcceeeeccCCccccCCCC-------cccccccc---cccCCCcccchh-hcc-
Confidence 3567554 777778999999999999999999987654432222 22222110 111122112222 111
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHH
Q 004901 100 GRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 100 gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
...|+..+-+......|+.+++.+
T Consensus 144 ~q~~~~~~~~~~~~~~~~~~~~l~ 167 (799)
T KOG1737|consen 144 CQIYLVELSKKLQRQGWLHALELA 167 (799)
T ss_pred cchhhhhhhHHHhhcchhhhhhhc
Confidence 467889999999999999999866
No 145
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.36 E-value=50 Score=40.14 Aligned_cols=31 Identities=16% Similarity=0.305 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 666 SKTRAELEEIALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (724)
...++|=.||-.|..|+...|+++..|..++
T Consensus 545 ~r~~~lE~E~~~lr~elk~kee~~~~~e~~~ 575 (697)
T PF09726_consen 545 QRRRQLESELKKLRRELKQKEEQIRELESEL 575 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444
No 146
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=90.17 E-value=1.9 Score=40.22 Aligned_cols=86 Identities=20% Similarity=0.214 Sum_probs=51.3
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceeee----eeCcEEcCCCcceeec-cCCc--ceEEEEecCCCCceEEEEeCC
Q 004901 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGSVVVR-EDKK--LLTVLFPDGRDGRAFTLKAET 109 (724)
Q Consensus 37 WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l----~L~~I~L~~~~sv~~~-~~Kk--~~fvit~~~~~gr~y~fqAdS 109 (724)
=+.||..|-...+.+.|...... +.++..+ .+..+.|......... ..++ +.|.+... .....|.|+|.|
T Consensus 20 ~k~RyiFLFDk~lI~CK~~~~~~--~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~-~~~~~~~f~~Kt 96 (116)
T cd01223 20 TKLRYIFLFDKAVIVCKALGDNT--GDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHK-QGKTGFTFYFKT 96 (116)
T ss_pred CceeEEEEecceEEEEEecCCCC--CCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEec-CCCccEEEEeCC
Confidence 36899999999999998665431 1222221 1222223322110010 1222 45655542 223679999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 004901 110 SEDLYEWKTALELALA 125 (724)
Q Consensus 110 eeE~~eWi~AL~~ai~ 125 (724)
+++.+.||.+|..|+.
T Consensus 97 ee~K~kWm~al~~a~s 112 (116)
T cd01223 97 EHLRKKWLKALEMAMS 112 (116)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999986
No 147
>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain. LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.
Probab=89.99 E-value=1.3 Score=40.05 Aligned_cols=83 Identities=16% Similarity=0.249 Sum_probs=49.1
Q ss_pred CCCcEEEEEEEeC----CeEEEEcC--CCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEe
Q 004901 34 WKSWKKRWFILTR----TSLVFFKN--DPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKA 107 (724)
Q Consensus 34 ~k~WKKRWFVL~~----~~L~yYKd--~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr~y~fqA 107 (724)
...|+|.=.+|+. ..|.||-- ++...|+.+- . +....++..++..... ++...|++.. .++..|.|.|
T Consensus 18 ~~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v--~-C~~I~EvR~tt~LEmP-D~~nTFvLK~--~~~~eyI~Ea 91 (107)
T cd01231 18 GARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQV--A-CSSISEVRECTRLEMP-DNLYTFVLKV--DDNTDIIFEV 91 (107)
T ss_pred ccccceeeEEEEecCCCceEEEEccCCCCCCCCcccc--c-hhhhhhhhhccccccc-CcccEEEEEe--cCCceEEEEc
Confidence 5568887777653 35555544 3333332211 0 1111233333333332 3556788765 3467899999
Q ss_pred CCHHHHHHHHHHHHH
Q 004901 108 ETSEDLYEWKTALEL 122 (724)
Q Consensus 108 dSeeE~~eWi~AL~~ 122 (724)
.+..+++.|+..|+.
T Consensus 92 ~d~~q~~SWla~Ir~ 106 (107)
T cd01231 92 GDEQQLNSWLAELRY 106 (107)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999999974
No 148
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=89.65 E-value=0.82 Score=43.79 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=25.4
Q ss_pred ceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
+.|.|..-|+.+..|+|+|+|..++++|+..|..+
T Consensus 100 yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q 134 (135)
T PF15405_consen 100 YPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ 134 (135)
T ss_dssp EEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred cCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence 55666666677778999999999999999999864
No 149
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]
Probab=88.86 E-value=0.18 Score=59.90 Aligned_cols=93 Identities=24% Similarity=0.374 Sum_probs=63.9
Q ss_pred CceEEEeeeeeeccC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe
Q 004901 17 NTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP 95 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg-~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~ 95 (724)
..+++.|||- |-. .+...++|||..+.+..+.||...++..+++ .|.+...+.+. ......+-+++-
T Consensus 85 sp~~~~gwld--k~~pqg~~~~qkr~vkf~~~s~~yf~~~k~py~k~---------~i~va~is~v~-~~gd~kfevitn 152 (1186)
T KOG1117|consen 85 SPVIKSGWLD--KLSPQGEYPFQKRWVKFDGSSLEYFLSPKDPYSKG---------PIPVAAISAVR-NFGDNKFEVITN 152 (1186)
T ss_pred Cchhhcchhh--ccCcCcccccCccceecCCCCccccCCCCCCCCCC---------ceeeehhhhhh-hccCceEEEEec
Confidence 3489999554 432 2344589999999999999999988766443 23333322221 122223344443
Q ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 96 ~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.|+|.|.++++.++..|+..++.++.
T Consensus 153 ----~r~fvfr~e~~~~r~~w~s~l~s~~~ 178 (1186)
T KOG1117|consen 153 ----QRTFVFRQESEGERFIWVSPLQSALK 178 (1186)
T ss_pred ----ceEEEEecCCcccceeeechhhhcch
Confidence 79999999999999999999998874
No 150
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.57 E-value=5.5 Score=43.45 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=64.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhCCCCCCC
Q 004901 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAE--------RDLRAALEVGLSMSSGQF 658 (724)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e--------~~~~~~le~~l~~~~~~~ 658 (724)
.++....|+.|..+|+-.+-.+|++|+||++.+.+=...|+.++.+|+.|++.= ...+.||+.+=+ .-.+
T Consensus 212 isa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n--~~~~ 289 (365)
T KOG2391|consen 212 ISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN--LEAL 289 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc--CcCC
Confidence 566777899999999999999999999999988766666666666655554421 223446666544 1112
Q ss_pred C----C-C-CCCChhHHHHHHHHHHHHHHHHHHHH
Q 004901 659 S----S-S-RGMDSKTRAELEEIALAEADVARLKQ 687 (724)
Q Consensus 659 ~----~-~-~~~~~~~~~ll~eia~~E~~v~~le~ 687 (724)
+ + + ..|-.+.-+.++.=...|..|-.|++
T Consensus 290 ~~D~~~~~~~~l~kq~l~~~A~d~aieD~i~~L~~ 324 (365)
T KOG2391|consen 290 DIDEAIECTAPLYKQILECYALDLAIEDAIYSLGK 324 (365)
T ss_pred CchhhhhccchHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 2 1 1 22334455555555567777777776
No 151
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.16 E-value=7.8 Score=45.01 Aligned_cols=103 Identities=22% Similarity=0.351 Sum_probs=73.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004901 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLER------RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~------~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~ 653 (724)
++..--||+.-.+.+-..|+-=-+.|+.|=..+.. |.+-+++++..|+-||-++|.=+..=...-.+
T Consensus 219 ~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~------- 291 (581)
T KOG0995|consen 219 EDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQH------- 291 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHH-------
Confidence 33445567777776666665555556555554443 34578888999999998888655544444444
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 654 SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 654 ~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
++.+...+=.||+..|+++..|.+++.+|+.++--|
T Consensus 292 ----------~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q 327 (581)
T KOG0995|consen 292 ----------MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQ 327 (581)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445556788999999999999999999999988755
No 152
>KOG1738 consensus Membrane-associated guanylate kinase-interacting protein/connector enhancer of KSR-like [Nucleotide transport and metabolism]
Probab=86.47 E-value=0.1 Score=60.36 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=38.7
Q ss_pred eEEEeeeeeeccCCC-CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCC
Q 004901 19 VFKSGPLFISSKGIG-WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN 77 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~-~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~ 77 (724)
-..+||||+.|..+. ...|+|.||||.+..|++|.+..... .+..+.+-.+.|..
T Consensus 562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~----~e~~i~l~~~~i~~ 617 (638)
T KOG1738|consen 562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRA----AESVIKLPLFTISV 617 (638)
T ss_pred chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhc----hhheeeccchhhhh
Confidence 456788887776532 55699999999999999999987655 33344444444443
No 153
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=86.03 E-value=2 Score=36.40 Aligned_cols=67 Identities=27% Similarity=0.323 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (724)
Q Consensus 622 ~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (724)
+|.-+++-+..|+++|+.|..++..+|+.+..-.. -|. + .-++.+|.....-.+++.-|+.+|....
T Consensus 3 ~~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~---~~~------~---~~~~~~~~~l~es~~ki~~Lr~~L~k~~ 69 (72)
T cd00089 3 VRSKLQSRLERLEKELSIELKVKEGAENLLRLYSD---EKK------K---KLLAEAEQMLRESKQKLELLKMQLEKLK 69 (72)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCC------c---cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35568899999999999999999999988752111 010 1 3455677788888899999999886543
No 154
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=84.23 E-value=7.1 Score=42.15 Aligned_cols=65 Identities=26% Similarity=0.373 Sum_probs=42.5
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER----------RLALEQDVSRLQEQLQAERDLRAALEV 649 (724)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----------r~~Le~~V~~L~~~L~~e~~~~~~le~ 649 (724)
..+|..-.+|+..|..-++.||.|+.-+..-+..+.+. |..||.++..|++.|+.+.-.|..|+.
T Consensus 50 ~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~ 124 (312)
T PF00038_consen 50 EMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLEN 124 (312)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHH
Confidence 34556666777777777777777777666555544333 445666667777777777777666665
No 155
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=83.26 E-value=0.87 Score=50.10 Aligned_cols=104 Identities=20% Similarity=0.223 Sum_probs=63.2
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-------CCcce
Q 004901 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-------DKKLL 90 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~-------~Kk~~ 90 (724)
.|-+-|||--+-.+.+...|+..+++|+...|.+|.+-+.+. ..+..+.....|.....|.... .-...
T Consensus 291 evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~k----eaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~ls 366 (506)
T KOG3551|consen 291 EVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTK----EAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLS 366 (506)
T ss_pred chhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhH----HHhcChhhhhhhhhhhheecCCCCCCCcCCceEE
Confidence 566779555444566788899999999999999998865543 2222233322222111111111 11123
Q ss_pred EEEEecCCCC-ceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 91 TVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 91 fvit~~~~~g-r~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
|.....++.| .+|+|.++|..|+-.|...|-.--+
T Consensus 367 Fa~RtGTrqGV~thlfrvEThrdLa~WtRslVqGch 402 (506)
T KOG3551|consen 367 FATRTGTRQGVETHLFRVETHRELAAWTRSLVQGCH 402 (506)
T ss_pred EEEecccccceEEEEEEeccHHHHHHHHHHHHHHHH
Confidence 4444433333 6999999999999999988854433
No 156
>PF15411 PH_10: Pleckstrin homology domain
Probab=82.26 E-value=13 Score=34.67 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=56.6
Q ss_pred CCcEEEEEEEeCCeEEEEcCCCCCCCC---------CCceeeeeeC-cEEcCCCcceeecc-CCcceEEEEec-CCCCce
Q 004901 35 KSWKKRWFILTRTSLVFFKNDPSALPQ---------RGGEVNLTLG-GIDLNNSGSVVVRE-DKKLLTVLFPD-GRDGRA 102 (724)
Q Consensus 35 k~WKKRWFVL~~~~L~yYKd~~~~~p~---------~~~~~~l~L~-~I~L~~~~sv~~~~-~Kk~~fvit~~-~~~gr~ 102 (724)
..|+-+.+-|-...|.++|........ +.....+.|. .|-+.+.+.+.... ...+...|... ...--.
T Consensus 19 ~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~~g~~~L~i~w~~d~e~~~ 98 (116)
T PF15411_consen 19 DSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSKPGSYSLQISWKGDPELEN 98 (116)
T ss_pred CcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCCCCceEEEEEEcCCCCCce
Confidence 459999999999999999986654331 1223344444 36666665554333 23344444442 223468
Q ss_pred EEEEeCCHHHHHHHHHHH
Q 004901 103 FTLKAETSEDLYEWKTAL 120 (724)
Q Consensus 103 y~fqAdSeeE~~eWi~AL 120 (724)
|+|...+++.++.|-.+|
T Consensus 99 F~lrf~nee~l~~W~~~L 116 (116)
T PF15411_consen 99 FTLRFRNEEQLEQWRSAL 116 (116)
T ss_pred EEEEeCCHHHHHHHHhhC
Confidence 999999999999998875
No 157
>PRK10884 SH3 domain-containing protein; Provisional
Probab=80.52 E-value=20 Score=36.87 Aligned_cols=70 Identities=11% Similarity=0.214 Sum_probs=43.0
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 004901 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQ 687 (724)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~ 687 (724)
|++.|..-.....++...|++.|+.+..+..+ |-.+-++|-+|++.+..++..|+.
T Consensus 105 l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~------------------------L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 105 LTDKLNNIDNTWNQRTAEMQQKVAQSDSVING------------------------LKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444556666666666665555333 223446677777778888888888
Q ss_pred HHHHHHHHHHHHHh
Q 004901 688 KVAELHHQLNQQRQ 701 (724)
Q Consensus 688 ~~~~l~~~l~~~~~ 701 (724)
+..+++..+..+..
T Consensus 161 ~~~~~~~~~~~~wf 174 (206)
T PRK10884 161 QLDDKQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888776655544
No 158
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=79.60 E-value=63 Score=34.84 Aligned_cols=113 Identities=25% Similarity=0.276 Sum_probs=71.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCC
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER---RLALEQDVSRLQEQLQAERDLRAALEVGLSM-SSG 656 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~---r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~-~~~ 656 (724)
+..+..|...-.+++.|+.++.+.+..++.-+..-++.+.+. |..||..|..|+++|.--+.+|..=-..|.. ..+
T Consensus 74 ~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~~ 153 (312)
T PF00038_consen 74 ELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQS 153 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT---
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcccc
Confidence 455677777788999999999999999999988888877554 7779999999999999888877752233422 212
Q ss_pred CCCCC--CCCChhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 004901 657 QFSSS--RGMDSKTRAELEEI-ALAEADVARLKQKVAELH 693 (724)
Q Consensus 657 ~~~~~--~~~~~~~~~ll~ei-a~~E~~v~~le~~~~~l~ 693 (724)
..+.. .+........|.+| +-.|..+.+-.+.+...+
T Consensus 154 ~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y 193 (312)
T PF00038_consen 154 SVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWY 193 (312)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhc
Confidence 22221 22233445556666 345555555444444433
No 159
>KOG4047 consensus Docking protein 1 (p62dok) [Signal transduction mechanisms]
Probab=78.49 E-value=1.1 Score=50.69 Aligned_cols=103 Identities=15% Similarity=-0.022 Sum_probs=58.6
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC---C
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED---K 87 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~------~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~---K 87 (724)
...+|.|+++.+....+.|.|.++|++|..+ .|-+|..++... .+.+ ..+.-+.+.++++.++..... .
T Consensus 6 ~~~~k~g~~~~~~~r~~~k~~~~~~~~L~~gs~~g~aRle~~~~~g~~~-~~~~-~~~~rR~~~ls~~~S~e~~~~~~~~ 83 (429)
T KOG4047|consen 6 SCLVKDGVPDNHRNKFKVKNVRDDGAELGSGSMELTARLEILESRGRES-VRWP-YRCLRRYGYLSNLFSFESGRRCQTG 83 (429)
T ss_pred CcccccCccchhhhhhccccccccceeeeccccccchhhhhhhccCCcc-cccc-hhcceeeEeeccceeeecccccccC
Confidence 5568999999888888888999999999875 333444332221 1111 111225677777766543211 1
Q ss_pred cceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
...++++.... .. +|-+...-+...|+++|....
T Consensus 84 ~~i~~~f~~~a-~e--~~~~~q~l~~~~w~~~i~~~~ 117 (429)
T KOG4047|consen 84 PGITAFFCDRA-EE--LFNMLQDLMQANWINAIEEPA 117 (429)
T ss_pred CCceEEEecch-HH--HHHHHHHHHhhhhhhhhhhcc
Confidence 11222221111 11 566666667778999987544
No 160
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=77.88 E-value=0.048 Score=68.87 Aligned_cols=102 Identities=24% Similarity=0.330 Sum_probs=65.2
Q ss_pred ceEEEeeeeeec------cCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCc---EEcCCCcc-e-eeccC
Q 004901 18 TVFKSGPLFISS------KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGG---IDLNNSGS-V-VVRED 86 (724)
Q Consensus 18 ~V~KeG~L~l~K------kg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~---I~L~~~~s-v-~~~~~ 86 (724)
....+|+||.+. +....++|..-||++..+.+.||||.+..... +.+.+++ ..+..+.. + ....+
T Consensus 2298 w~~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~----ve~~~r~e~~lel~~a~i~~a~dy~k 2373 (2473)
T KOG0517|consen 2298 WRQLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLAS----VELLVRGEPPLELDMAAIEVASDYHK 2373 (2473)
T ss_pred HHHHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCccccc----chhhccCCcchhcchhHHHHHHHHHH
Confidence 357789997442 12236689999999999999999997654311 0011111 11111111 1 11234
Q ss_pred CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 87 Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
|++.|.+. ..+|..|.|+|.++++|+.|+.++....+
T Consensus 2374 kk~v~~l~--~~~gae~llq~k~ee~m~sWL~~~a~~~~ 2410 (2473)
T KOG0517|consen 2374 KKHVFLLQ--LPPGAEHLLQAKDEEEMESWLRALAVKRA 2410 (2473)
T ss_pred HhHhhhhc--CCchHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 55556654 46799999999999999999998887765
No 161
>KOG3727 consensus Mitogen inducible gene product (contains ERM and PH domains) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.30 E-value=0.3 Score=55.78 Aligned_cols=87 Identities=17% Similarity=0.355 Sum_probs=51.4
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEeCCHHHH
Q 004901 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (724)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~ 113 (724)
+|..+|.||..+.-.+.+|++..+.. +.+-..+.+.+|.++....... .+-..|.+.+.......+|+.|+++...
T Consensus 372 ~Kg~kr~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~--~k~~i~l~~~~~~~msEi~LRCd~E~QY 447 (664)
T KOG3727|consen 372 LKGYKRYFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQ--QKYAIKLLVPTAEGMSEIWLRCDNEQQY 447 (664)
T ss_pred hhhhhhHHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCcccccc--ccceEEEEeecCCccceeEEecCCHHHH
Confidence 66677777766554444444332221 2222334566666665433222 2223344444344467899999999999
Q ss_pred HHHHHHHHHHH
Q 004901 114 YEWKTALELAL 124 (724)
Q Consensus 114 ~eWi~AL~~ai 124 (724)
-+||.|-+-|-
T Consensus 448 A~WMAaCrLAS 458 (664)
T KOG3727|consen 448 ARWMAACRLAS 458 (664)
T ss_pred HHHHHHhhHhh
Confidence 99999998664
No 162
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=76.80 E-value=1.1 Score=52.42 Aligned_cols=89 Identities=7% Similarity=-0.123 Sum_probs=56.4
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCC
Q 004901 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRD 99 (724)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~ 99 (724)
.+.| +++++.+.+++|+.+||++.++.+.||+++-+.. .+... .-+++...-... ...++. .++
T Consensus 260 s~~k--~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~-s~~~~---~~~~~s~~fqli---~~t~~~--~~~----- 323 (936)
T KOG0248|consen 260 SRIK--SLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIR-SVTKL---EQQGAAYAFQLI---TSTDKM--NFM----- 323 (936)
T ss_pred HHHH--HHHhHheeeccceEEEEEcCCCccccccCccccc-cccee---eccchhHHhhhh---hhceeE--EEe-----
Confidence 5556 5556777799999999999999999999977532 22110 111222211000 011221 122
Q ss_pred CceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 100 GRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 100 gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
..+|++-++...-+..|++++....
T Consensus 324 ~~s~~lt~dw~~iL~~~iKv~~~~~ 348 (936)
T KOG0248|consen 324 TESERTTHDWVTILSAAIKATTLRE 348 (936)
T ss_pred ccChhhhhhhHHHHHHHHHHHhccc
Confidence 2468999999999999999987654
No 163
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=75.64 E-value=20 Score=36.48 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=15.9
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHH
Q 004901 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQA 618 (724)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 618 (724)
|-+|.+.=.|||.+|..=.++|-.|..--.|..++
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kA 48 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKRQEKA 48 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455555544444454444433333333
No 164
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=74.60 E-value=0.046 Score=59.53 Aligned_cols=112 Identities=24% Similarity=0.333 Sum_probs=75.4
Q ss_pred HHHHhhhhhHHHHH---HHHHHhhhhhhhhhhHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 004901 583 AIQRLEITKNDLRH---RIAKEARGNAILQASLERRKQALHERRLA---LEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (724)
Q Consensus 583 ~~~~~~~~~~~~~~---~~~~~~~~n~~~~~~~~~~~~~~~~~r~~---Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~ 656 (724)
..+-|++.+.+|+- +-....=+||.|--.+|.++++|+.+..+ |-.--.+|..+|-.|+.--+.|-.+=++-.|
T Consensus 419 yleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQELnaHNQELnnRLaaEItrLRtlltgdGgGtG 498 (593)
T KOG4807|consen 419 YLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQELNAHNQELNNRLAAEITRLRTLLTGDGGGTG 498 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHhccCCCCCC
Confidence 34556777777764 45667789999998999999999988654 5555667888999998755544443332222
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 657 QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 657 ~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
-+....-+..-.+.| +-+-|.+|-+|+|+|..|+..|.
T Consensus 499 -splaqgkdayELEVL--LRVKEsEiQYLKqEissLkDELQ 536 (593)
T KOG4807|consen 499 -SPLAQGKDAYELEVL--LRVKESEIQYLKQEISSLKDELQ 536 (593)
T ss_pred -CccccCcchhhHHHH--HHhhHHHHHHHHHHHHHHHHHHH
Confidence 111122222222333 45679999999999999999886
No 165
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=74.30 E-value=2.2e+02 Score=34.86 Aligned_cols=19 Identities=42% Similarity=0.604 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004901 631 SRLQEQLQAERDLRAALEV 649 (724)
Q Consensus 631 ~~L~~~L~~e~~~~~~le~ 649 (724)
..|+++|.+|+..|..||.
T Consensus 491 ~~LEkrL~eE~~~R~~lEk 509 (697)
T PF09726_consen 491 QQLEKRLAEERRQRASLEK 509 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444
No 166
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.18 E-value=55 Score=35.91 Aligned_cols=97 Identities=27% Similarity=0.318 Sum_probs=50.0
Q ss_pred hhhhhhhhhh----------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhCCCCCCCC-CCCC
Q 004901 602 ARGNAILQAS----------LERRKQALHERRLALEQDVSRLQEQLQAERDL-------RAALEVGLSMSSGQFS-SSRG 663 (724)
Q Consensus 602 ~~~n~~~~~~----------~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~-------~~~le~~l~~~~~~~~-~~~~ 663 (724)
+|.+|-|||. ++.=+..|.+.+..|++|.+.|.+.++.=..+ +..|+.-+..-..... +..+
T Consensus 127 vK~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~ 206 (325)
T PF08317_consen 127 VKTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESC 206 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 5777777765 22333355555555666655555544433222 3333332221111111 2234
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (724)
=+.+..++=++|+.++++|..+.+++.+|+.+|.+
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~ 241 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEE 241 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777666666666665543
No 167
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=73.75 E-value=97 Score=33.86 Aligned_cols=35 Identities=26% Similarity=0.287 Sum_probs=20.9
Q ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 004901 623 RLALEQD----VSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (724)
Q Consensus 623 r~~Le~~----V~~L~~~L~~e~~~~~~le~~l~~~~~~ 657 (724)
--+|||+ |-+|++|..+=..=.+.|+.-|..+.+.
T Consensus 169 En~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~ 207 (310)
T PF09755_consen 169 ENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSA 207 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 3345555 6677777665555566777777654333
No 168
>PRK11637 AmiB activator; Provisional
Probab=73.73 E-value=23 Score=40.29 Aligned_cols=36 Identities=22% Similarity=0.225 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 004901 670 AELEEIALAEADVARLKQKVAELHHQLNQQRQHHYG 705 (724)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~ 705 (724)
++=.+|+.++.+|..++.++..++.+|.+.....|.
T Consensus 100 ~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 100 QLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666655544443
No 169
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=72.97 E-value=16 Score=30.94 Aligned_cols=55 Identities=24% Similarity=0.357 Sum_probs=40.8
Q ss_pred HHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 004901 585 QRLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~----------~~~~~r~~Le~~V~~L~~~L~~ 639 (724)
++||+.+..||.++.-=.+-|++-|..+..=.. ..++.=..|..+|..|+++|++
T Consensus 1 ~~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 1 QKLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999998888888888876554222 1123334588999999998765
No 170
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=72.54 E-value=16 Score=35.98 Aligned_cols=65 Identities=23% Similarity=0.337 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 622 RRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 622 ~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
--.+|..++..|+++|..-..-...|+.-|..-.. -+.+.+|..+|+.|+.++..|+.++..|+.
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~--------~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSS--------EPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666667777666666666666554431111 112467889999999999999999988875
No 171
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.63 E-value=1.6e+02 Score=37.65 Aligned_cols=76 Identities=30% Similarity=0.386 Sum_probs=41.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHH-HHHHHHHHHHH------
Q 004901 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE-IALAEADVARL------ 685 (724)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~e-ia~~E~~v~~l------ 685 (724)
.+|-..+.-++..|+-+|.++-.+++....-=+.+|.++. +...+.+....+.+ |+-++-+|-.|
T Consensus 812 r~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~--------k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~~K 883 (1293)
T KOG0996|consen 812 RERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL--------KKVVDKKRLKELEEQIEELKKEVEELQEKAAK 883 (1293)
T ss_pred HHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hccCcHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 3333334444444444555554444444333344555432 34456677777776 77777777777
Q ss_pred HHHHHHHHHHH
Q 004901 686 KQKVAELHHQL 696 (724)
Q Consensus 686 e~~~~~l~~~l 696 (724)
++++..|+..+
T Consensus 884 k~~i~~lq~~i 894 (1293)
T KOG0996|consen 884 KARIKELQNKI 894 (1293)
T ss_pred HHHHHHHHHHH
Confidence 36666666544
No 172
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=71.63 E-value=4.2 Score=48.79 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=34.4
Q ss_pred CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 87 Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
+-+.|++.+.+...-.|.|.|++.+++.+|+++|+.+...+
T Consensus 873 ~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~a 913 (1267)
T KOG1264|consen 873 KSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWKA 913 (1267)
T ss_pred cceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHHh
Confidence 33778887777777789999999999999999999987644
No 173
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=71.07 E-value=1.1e+02 Score=32.22 Aligned_cols=112 Identities=23% Similarity=0.356 Sum_probs=63.8
Q ss_pred HhhhhhHHHHHHHH----HHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 004901 586 RLEITKNDLRHRIA----KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (724)
Q Consensus 586 ~~~~~~~~~~~~~~----~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~ 661 (724)
+.|..+.+|..|+. +-.+.+..|..+ +.+...|.+.+..+|.+-.+|+..-.+=......|+.--.+.. .-=
T Consensus 2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~-e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~---eEk 77 (246)
T PF00769_consen 2 EAEREKQELEERLRQMEEEMRRAQEALEES-EETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQE---EEK 77 (246)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 34556666666652 122444455444 3344455555555555555555544333333333333221110 011
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
..|..++.+.-.+|+.|+.++...+..+..|+.+|...|.
T Consensus 78 ~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 78 EQLEQELREAEAEIARLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477789999999999999999999999999999886554
No 174
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=71.07 E-value=53 Score=39.52 Aligned_cols=101 Identities=21% Similarity=0.264 Sum_probs=49.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 004901 584 IQRLEITKNDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (724)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~---~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~ 660 (724)
+++|...-.++..+-.++...+..+ ..++ ++...+......++++.+.++.++..-..-...|+..+....|
T Consensus 184 ~~~L~~dl~~~~~~~~~~~~~~~~~-~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~~GG---- 258 (650)
T TIGR03185 184 IDRLAGDLTNVLRRRKKSELPSSIL-SEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGG---- 258 (650)
T ss_pred HHHHHHHHHHHHHHHHhcccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----
Confidence 4455554455555655555543332 2222 2333334445556666666666666555555555555543322
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 661 ~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (724)
.++++...+|.++..++.+....+.++.+
T Consensus 259 ---------~~~~~r~~Le~ei~~le~e~~e~~~~l~~ 287 (650)
T TIGR03185 259 ---------DLFEEREQLERQLKEIEAARKANRAQLRE 287 (650)
T ss_pred ---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555444444444443
No 175
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=71.04 E-value=55 Score=39.97 Aligned_cols=109 Identities=19% Similarity=0.373 Sum_probs=66.5
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCCCC
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEV----GLSMSS 655 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~----~l~~~~ 655 (724)
-|+|++.++.++|.|+. .|+...+++-+ .+.++|..|.+.=++|.+++++=.+.+..|.. .|+...
T Consensus 552 Yi~~~~~ar~ei~~rv~-------~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 552 YIEKQDLAREEIQRRVK-------LLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777777764 23333333322 33445555655555555555544444444432 222221
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 656 ~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
.. .|. +-..-++.-.|+..+...+-.|..-+..++.++..|+.
T Consensus 625 ~~--~P~-LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~ 667 (717)
T PF10168_consen 625 SQ--LPV-LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQR 667 (717)
T ss_pred cc--CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 222 44555888999999999999999999999999986654
No 176
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=70.25 E-value=93 Score=32.84 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=24.4
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (724)
Q Consensus 609 ~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l 651 (724)
+..|.+......+++.+|+-++.+|...+++=.+....|...+
T Consensus 91 ~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~ 133 (239)
T COG1579 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666777777776666665554444444444433
No 177
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=70.12 E-value=1.2e+02 Score=31.10 Aligned_cols=115 Identities=22% Similarity=0.297 Sum_probs=75.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhh---------------hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQ---------------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~---------------~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~l 647 (724)
+-+|=|.+..-|+.|+-+|++.=-.-| ..|.++.+.-.++-++||-||.+.+++--+|-.||.+=
T Consensus 18 a~ekRE~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a 97 (205)
T PF12240_consen 18 ACEKREQLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFA 97 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777888888888874321111 22556666677889999999999999999999998654
Q ss_pred HHhhCCCCC-----CCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 648 EVGLSMSSG-----QFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 648 e~~l~~~~~-----~~~-~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
-.|...+.. .+. .|..=+..-....++|.+...-+..||..|..||.+|-
T Consensus 98 ~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~LhaqI~ 153 (205)
T PF12240_consen 98 MDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKALHAQIA 153 (205)
T ss_pred HHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 333222111 111 12111111114578899999999999999999998765
No 178
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=70.10 E-value=36 Score=31.23 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=25.6
Q ss_pred ceEEEEecC-CCCceEEEEeCCHHHHHHHHHHHHH
Q 004901 89 LLTVLFPDG-RDGRAFTLKAETSEDLYEWKTALEL 122 (724)
Q Consensus 89 ~~fvit~~~-~~gr~y~fqAdSeeE~~eWi~AL~~ 122 (724)
.||.|.... .+-+...|-|++.++++.|+..|+.
T Consensus 80 ~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 80 RCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred cEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 566555422 1257899999999999999999863
No 179
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=70.08 E-value=59 Score=38.18 Aligned_cols=97 Identities=29% Similarity=0.422 Sum_probs=58.3
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhh--------------hhh---hHHHhHHHHHHHH-------HHHHHHHHHHH
Q 004901 579 EEELAIQRLEITKNDLRHRIAKEARGNAI--------------LQA---SLERRKQALHERR-------LALEQDVSRLQ 634 (724)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~--------------~~~---~~~~~~~~~~~~r-------~~Le~~V~~L~ 634 (724)
.=+..|-||+.-=.+|..+..|-.|+=+. ||| .+.+|.+.+.+-- ..|..++.+++
T Consensus 110 ~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 110 KLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 34667778887778888877655433222 222 2344444443332 22556666777
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 635 EQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (724)
Q Consensus 635 ~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (724)
++|+.|+.+|.-++. ++|.||+||+-+... =++.|.+++..
T Consensus 190 ~~ld~Etllr~d~~n-----------------~~q~Lleel~f~~~~---h~~eI~e~~~~ 230 (546)
T KOG0977|consen 190 KQLDDETLLRVDLQN-----------------RVQTLLEELAFLKRI---HKQEIEEERRK 230 (546)
T ss_pred HHHHHHHHHHHHHHh-----------------HHHHHHHHHHHHHhc---cHHHHHHHHHH
Confidence 788888888887765 567888888877633 33444444433
No 180
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=69.93 E-value=35 Score=38.41 Aligned_cols=105 Identities=23% Similarity=0.285 Sum_probs=67.2
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC-------
Q 004901 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS------- 659 (724)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~------- 659 (724)
|+.+.++|+.+-. +.|+.|. +|-..+.+.+..||....+..+++..-...-..|+.|+....|++.
T Consensus 231 l~~~~~dl~~Q~~---~vn~al~----~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~ 303 (384)
T PF03148_consen 231 LEQTANDLRAQAD---AVNAALR----KRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLE 303 (384)
T ss_pred HHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 4445555555443 4555443 4444555556666666666666666555555666666655545432
Q ss_pred ----CC---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 660 ----SS---RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 660 ----~~---~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (724)
=| -+-++.-..|+.||..|...|..|.+++...+..|..
T Consensus 304 ~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~ 349 (384)
T PF03148_consen 304 NRTQRPNVELCRDPPQYGLIEEVKELRESIEALQEKLDEAEASLQK 349 (384)
T ss_pred hHhcCCchHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 3456667788899999999999999999888776654
No 181
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=69.11 E-value=22 Score=46.91 Aligned_cols=90 Identities=21% Similarity=0.288 Sum_probs=63.5
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC-CCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004901 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF-SSSRGMDSKTRAELEEIALAEADVARLK 686 (724)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~-~~~~~~~~~~~~ll~eia~~E~~v~~le 686 (724)
++-+...+|..+..+-..|+.++.+|++.|+++..=.+-|..-++...-.. ..=-.+=.....++++++.++.++..||
T Consensus 792 ~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le 871 (1822)
T KOG4674|consen 792 LEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLE 871 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444556666777888999999999999999877666666554321111 1112233456788999999999999999
Q ss_pred HHHHHHHHHHH
Q 004901 687 QKVAELHHQLN 697 (724)
Q Consensus 687 ~~~~~l~~~l~ 697 (724)
.++.+|..+|-
T Consensus 872 ~k~~eL~k~l~ 882 (1822)
T KOG4674|consen 872 IKLSELEKRLK 882 (1822)
T ss_pred HHHHHHHHHHH
Confidence 99999988776
No 182
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=68.90 E-value=1.1e+02 Score=32.26 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=23.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHH
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALE 627 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le 627 (724)
.+++++..-..|+.+|.+--+.....+..+..+++.++.+|..|.
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555544
No 183
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.32 E-value=87 Score=42.24 Aligned_cols=79 Identities=19% Similarity=0.355 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC---C-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS---S-RGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~---~-~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
.+...+.-||++|..|+..|.+|...|.=+|++...-.|.+.. + .-+-.+..+|-.+++..|.++..|..++.++.
T Consensus 1010 ~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~l~kke~El~~l~~k~e~e~ 1089 (1930)
T KOG0161|consen 1010 SLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQLKKKESELSQLQSKLEDEQ 1089 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3355577799999999999999999999999554433344421 1 11333444555555666666666666666555
Q ss_pred HHH
Q 004901 694 HQL 696 (724)
Q Consensus 694 ~~l 696 (724)
..+
T Consensus 1090 ~~~ 1092 (1930)
T KOG0161|consen 1090 AEV 1092 (1930)
T ss_pred HHH
Confidence 543
No 184
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=68.27 E-value=82 Score=35.05 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004901 673 EEIALAEADVARLKQKVAELHHQ 695 (724)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~ 695 (724)
.+++.++.++..++.++..++.+
T Consensus 210 ~~l~~~~~~l~~~~~~l~~~~~~ 232 (423)
T TIGR01843 210 GELGRLEAELEVLKRQIDELQLE 232 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 185
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=67.92 E-value=22 Score=39.84 Aligned_cols=69 Identities=30% Similarity=0.320 Sum_probs=45.7
Q ss_pred HHHhhhhhHHHHHHHHHHh------------------------hhhhhhhhhHHHhHHHHHH-----------HHH---H
Q 004901 584 IQRLEITKNDLRHRIAKEA------------------------RGNAILQASLERRKQALHE-----------RRL---A 625 (724)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~------------------------~~n~~~~~~~~~~~~~~~~-----------~r~---~ 625 (724)
|++||..|.-||.+...+| .-=-+||+.++|-|..+.. ||. .
T Consensus 210 mdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~qy~~Ee~~ 289 (552)
T KOG2129|consen 210 MDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLMQYRAEEVD 289 (552)
T ss_pred HHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788888888888873332 1123678888887765422 222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004901 626 LEQDVSRLQEQLQAERDLRAALEVGLS 652 (724)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~le~~l~ 652 (724)
.+.+-++||+.|+.|..-|.||=+-|.
T Consensus 290 ~reen~rlQrkL~~e~erRealcr~ls 316 (552)
T KOG2129|consen 290 HREENERLQRKLINELERREALCRMLS 316 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455667888888888888887766554
No 186
>PRK11637 AmiB activator; Provisional
Probab=67.84 E-value=1.4e+02 Score=34.02 Aligned_cols=87 Identities=16% Similarity=0.269 Sum_probs=40.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 004901 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~ 659 (724)
+-..|+.+...+.+|...+ +.++..+..+...+.+++++..+|+.+..+-..+...|+.
T Consensus 168 d~~~l~~l~~~~~~L~~~k-----------~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~---------- 226 (428)
T PRK11637 168 RQETIAELKQTREELAAQK-----------AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLES---------- 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 4555666666655554332 2333334444444444444444444444443333333332
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 660 ~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
..++.-++|+.++.+..+|+..+..+..
T Consensus 227 -------~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 227 -------SLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344445555555556555555544
No 187
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=67.83 E-value=75 Score=32.44 Aligned_cols=115 Identities=19% Similarity=0.223 Sum_probs=68.4
Q ss_pred cccCcccCCCCcccCCCCc--hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHh----HHHHHHHHHHHHHHHHHH
Q 004901 560 WGRSNARKTSSVESIDSSG--EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERR----KQALHERRLALEQDVSRL 633 (724)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~----~~~~~~~r~~Le~~V~~L 633 (724)
.|+++. +......||+. +.+-++-||+.-=.+|-.+|++--+ ..++| .....=-|.+|||=..=-
T Consensus 74 lG~~~~--s~~~~gTdfS~~~~~dwEevrLkrELa~Le~~l~~~~~-------~~~~~~~~~~~~~~lvk~e~EqLL~YK 144 (195)
T PF12761_consen 74 LGRGGK--SYKEKGTDFSATEGTDWEEVRLKRELAELEEKLSKVEQ-------AAESRRSDTDSKPALVKREFEQLLDYK 144 (195)
T ss_pred hccccC--CCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH-------HHHhcccCCcchHHHHHHHHHHHHHHH
Confidence 555544 44555667754 4567788898888888888864222 22221 111222244555555444
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 634 QEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (724)
Q Consensus 634 ~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (724)
+.||+ ..-+ ++ ...+...+.+=++|..+|..|.-||.++..=+..|.+-+
T Consensus 145 ~~ql~------~~~~---~~--------~~~~~~l~~v~~Dl~~ie~QV~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 145 ERQLR------ELEE---GR--------SKSGKNLKSVREDLDTIEEQVDGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHH------hhhc---cC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44443 3222 22 223556677778888888888888888887777776644
No 188
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=67.64 E-value=78 Score=36.26 Aligned_cols=40 Identities=30% Similarity=0.401 Sum_probs=35.3
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
..-|.++..|=.||...|++|.-|..+.++||+||..|+.
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~I 365 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGI 365 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCC
Confidence 3457788999999999999999999999999999987664
No 189
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=66.89 E-value=40 Score=41.30 Aligned_cols=99 Identities=22% Similarity=0.348 Sum_probs=55.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 004901 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (724)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~ 661 (724)
...++|+..|.+|...+++--. .++ .++-+=.++|+.+..||.+|.-=.....++|..|.......
T Consensus 596 eelE~le~eK~~Le~~L~~~~d-------~lE----~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~--- 661 (769)
T PF05911_consen 596 EELEKLESEKEELEMELASCQD-------QLE----SLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESY--- 661 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 3455566666666555543222 222 22223356899999999999999999999998886332211
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
+.+-.-+..+|+++..|-.+|..|..+|-.+|.
T Consensus 662 -------e~le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~ 694 (769)
T PF05911_consen 662 -------ESLETRLKDLEAEAEELQSKISSLEEELEKERA 694 (769)
T ss_pred -------HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 111122223455555555555555555555544
No 190
>PF15175 SPATA24: Spermatogenesis-associated protein 24
Probab=66.87 E-value=10 Score=36.70 Aligned_cols=85 Identities=26% Similarity=0.277 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCC-CC---CCCCCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 629 DVSRLQEQLQAERDLRAALEVGLSMSSG-QF---SSSRGMDSKTRAELEEIA--LAEADVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 629 ~V~~L~~~L~~e~~~~~~le~~l~~~~~-~~---~~~~~~~~~~~~ll~eia--~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (724)
||+-|-+||++|.. |.|.||..-.. .+ +-...|-.+--+.=++|+ .-|.-+.-=|.++.+|+..|.+|+..
T Consensus 39 eieiL~kQl~rek~---afe~a~~~vk~k~~~Es~k~dqL~~KC~~~~~ei~c~kqed~LngKe~~I~eLk~~l~sQK~~ 115 (153)
T PF15175_consen 39 EIEILSKQLEREKL---AFEKALGSVKSKVLQESSKKDQLITKCNEIESEIICHKQEDILNGKENEIKELKQRLASQKQN 115 (153)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhcccccchHHHHhhhHHHHHH
Confidence 78889999999875 34455431100 00 000112222222223444 44444445577899999999999999
Q ss_pred -hcCCCccccccccc
Q 004901 703 -HYGSLSDACDRYQN 716 (724)
Q Consensus 703 -~~~s~~~~~~~~~~ 716 (724)
+...+.|...+.++
T Consensus 116 ~Hk~qlsdl~Iqk~Q 130 (153)
T PF15175_consen 116 FHKRQLSDLRIQKQQ 130 (153)
T ss_pred HhhccchhhHHhhHH
Confidence 89999888766543
No 191
>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.
Probab=65.12 E-value=50 Score=32.02 Aligned_cols=104 Identities=15% Similarity=0.286 Sum_probs=60.3
Q ss_pred eEEEeeeeeeccCCCCCCcE----EEEEEEeCCeEEEEcCCCCCCCCCCc---------------eeeeeeCcEEcCCCc
Q 004901 19 VFKSGPLFISSKGIGWKSWK----KRWFILTRTSLVFFKNDPSALPQRGG---------------EVNLTLGGIDLNNSG 79 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WK----KRWFVL~~~~L~yYKd~~~~~p~~~~---------------~~~l~L~~I~L~~~~ 79 (724)
....|..|+.--. ..+.|| -.-||.+.-...+||+....+.+-++ ...++.....+....
T Consensus 28 L~h~~v~WLNp~~-slgk~kKe~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n 106 (160)
T cd01255 28 LYHGGVEWLNPSD-SLGKIKKELELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASS 106 (160)
T ss_pred hhhcceeeecCCh-hhccccCCceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCC
Confidence 3445556654321 122343 46789999989999886543322211 111222222222211
Q ss_pred ceeeccCCcceEEEEe-----cCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 80 SVVVREDKKLLTVLFP-----DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 80 sv~~~~~Kk~~fvit~-----~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
. ...+.++.+.++. .++..++|.|++.+.+..+..+..|+..+.
T Consensus 107 ~--ad~e~~~vwEliH~kSe~egRpE~vfqLCcS~~E~k~~flK~Irsilr 155 (160)
T cd01255 107 A--ADMESNFLWELIHLKSELEGRPEKVFVLCCSTAESRNAFLKTIRSILR 155 (160)
T ss_pred C--cCcccceEEEEEeecccccCCCcceEEEecCCHHHHHHHHHHHHHHHH
Confidence 1 1234556665543 344678999999999999999999999886
No 192
>KOG3523 consensus Putative guanine nucleotide exchange factor TIM [Signal transduction mechanisms]
Probab=64.28 E-value=10 Score=44.26 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=47.5
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeee----eeCcEEcCCCcc--eee-----ccCCcceEEEEe-cCCCC-
Q 004901 34 WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNL----TLGGIDLNNSGS--VVV-----REDKKLLTVLFP-DGRDG- 100 (724)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l----~L~~I~L~~~~s--v~~-----~~~Kk~~fvit~-~~~~g- 100 (724)
+...+..|+.|-++.|.+-|-+.... +.+ +...+.+..+.. ..+ ....++.|.++. ....+
T Consensus 496 k~~~~~vylfLFnD~Llitk~k~~~~------f~V~Dya~r~~l~ve~~e~~~~lp~~~~~~~~~~hlF~ltLl~N~~~~ 569 (695)
T KOG3523|consen 496 KRLSKTVYLFLFNDLLLITKKKSEGS------FQVFDYAPRSLLQVEKCEPELKLPGGANSLSSRPHLFLLTLLSNHQGR 569 (695)
T ss_pred ccccceeeeeeecceeeEeeecCCCc------eEEeeccchhhhhhhhcCcccCCCCCCcccccccceEEEehhhccCCC
Confidence 33456788888888888887654321 111 111222222221 000 122346677764 22222
Q ss_pred -ceEEEEeCCHHHHHHHHHHHH
Q 004901 101 -RAFTLKAETSEDLYEWKTALE 121 (724)
Q Consensus 101 -r~y~fqAdSeeE~~eWi~AL~ 121 (724)
..|+|+|+|+.|+++||.|+.
T Consensus 570 ~~e~lL~a~s~Sd~~RWi~Al~ 591 (695)
T KOG3523|consen 570 QTELLLSAESQSDRQRWISALR 591 (695)
T ss_pred ceeeeecCCchHHHHHHHHhcC
Confidence 479999999999999999996
No 193
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=63.45 E-value=7.4 Score=45.05 Aligned_cols=97 Identities=19% Similarity=0.216 Sum_probs=57.3
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc--------eeecc
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--------VVVRE 85 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~s--------v~~~~ 85 (724)
..+++..|+||+-.-.... ..-||.|..|+...+..|.+..... .-..|.|....+ .++..
T Consensus 408 Rksst~~kEGWmvHyt~~d--~lRkrHYWrldsk~itlfqn~s~~r---------yYkeIPLsEIl~v~~~~~~~~vp~~ 476 (888)
T KOG4236|consen 408 RKSSTKLKEGWMVHYTSKD--NLRKRHYWRLDSKCITLFQNESTNR---------YYKEIPLSEILSVSSNNGFSLVPAG 476 (888)
T ss_pred ccchhhhhcceEEEEechh--hhhhhhhheeccceeEeeecCCCce---------eEEeecHHHhheeeccCCcccCCCC
Confidence 4566788999663211111 1125566678888888887765432 112233333222 22334
Q ss_pred CCcceEEEEecCCCCceEEEEeCC------------HHHHHHHHHHHHHHHh
Q 004901 86 DKKLLTVLFPDGRDGRAFTLKAET------------SEDLYEWKTALELALA 125 (724)
Q Consensus 86 ~Kk~~fvit~~~~~gr~y~fqAdS------------eeE~~eWi~AL~~ai~ 125 (724)
...+||.|.. +.+.||-.++ ......|-.||+.++-
T Consensus 477 ~~phcFEI~T----~~~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM 524 (888)
T KOG4236|consen 477 TNPHCFEIRT----ATTVYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM 524 (888)
T ss_pred CCCceEEEEe----eeEEEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence 5568999876 3456666666 4458899999998875
No 194
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=63.22 E-value=38 Score=28.14 Aligned_cols=28 Identities=29% Similarity=0.546 Sum_probs=23.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (724)
+++|=++...+..+|+++|.+|++++.+
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555667788899999999999999865
No 195
>PHA02562 46 endonuclease subunit; Provisional
Probab=62.50 E-value=1.6e+02 Score=34.32 Aligned_cols=32 Identities=9% Similarity=0.220 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 665 DSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (724)
|.....|-.+|+-++.++..|+..+.++....
T Consensus 298 ~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~ 329 (562)
T PHA02562 298 PDRITKIKDKLKELQHSLEKLDTAIDELEEIM 329 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666666666666444433
No 196
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=62.45 E-value=1.9e+02 Score=32.48 Aligned_cols=82 Identities=27% Similarity=0.457 Sum_probs=60.1
Q ss_pred CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCcceEEEEecCCCCceEEEEeCCHHHH
Q 004901 35 KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVLFPDGRDGRAFTLKAETSEDL 113 (724)
Q Consensus 35 k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~-~~Kk~~fvit~~~~~gr~y~fqAdSeeE~ 113 (724)
..|++.|||++...+.||.+........ -.+.|++..|+.+... ...++-|.|.. .+.+|.|.|.+..-+
T Consensus 33 ~~~~k~~~~~~~~~~~~~~d~~A~~~~~------L~~~~~LR~C~~v~e~a~q~nY~~~i~~---~~~~~tL~~~~s~Ir 103 (593)
T KOG4807|consen 33 SQWKKHWFVLTDSSLKYYRDSTAEEADE------LDGEIDLRSCTDVTEYAVQRNYGFQIHT---KDAVYTLSAMTSGIR 103 (593)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccc------CCccccHHHHHHHHHHHHHhccceeecc---cchhhhhHHHHHHHH
Confidence 4599999999999999999865432111 2345888888774332 23445566643 378999999999999
Q ss_pred HHHHHHHHHHHh
Q 004901 114 YEWKTALELALA 125 (724)
Q Consensus 114 ~eWi~AL~~ai~ 125 (724)
..|+.|+++...
T Consensus 104 ~~~~~A~~kT~~ 115 (593)
T KOG4807|consen 104 RNWIEALRKTVR 115 (593)
T ss_pred HHHHHHHHhccC
Confidence 999999997764
No 197
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=62.32 E-value=38 Score=39.75 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=22.0
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 594 LRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (724)
Q Consensus 594 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le 648 (724)
||.++-+--|++.-|+.. ...|.+....|+.+|.+|+.+|+.++.-..-|+
T Consensus 141 lQ~qlE~~qkE~eeL~~~----~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~ 191 (546)
T PF07888_consen 141 LQNQLEECQKEKEELLKE----NEQLEEEVEQLREEVERLEAELEQEEEEMEQLK 191 (546)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433444444322 223333334455555555555544444333333
No 198
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=62.17 E-value=23 Score=29.79 Aligned_cols=60 Identities=27% Similarity=0.366 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 628 QDVSRLQEQLQAERDLRAALEVGLSM-SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 628 ~~V~~L~~~L~~e~~~~~~le~~l~~-~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
|-++.|+++|+.|..++...|+.+.. ... .+ . =.+.++..+..-++++..|+.+|..-..
T Consensus 1 q~i~~L~~~i~~E~ki~~Gae~m~~~~~t~---------~~---~--~~~~~~~~l~~s~~kI~~L~~~L~~l~~ 61 (70)
T PF02185_consen 1 QRIEELQKKIDKELKIKEGAENMLQAYSTD---------KK---K--VLSEAESQLRESNQKIELLREQLEKLQQ 61 (70)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCCH---------HC---H---HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHccC---------cH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999998887752 111 00 0 2344555666666666666666665443
No 199
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=61.78 E-value=1.4e+02 Score=34.26 Aligned_cols=43 Identities=21% Similarity=0.379 Sum_probs=28.4
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (724)
Q Consensus 609 ~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l 651 (724)
++.+..|...++..+..+++.+..++.+++.=+.+..+++..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 202 (457)
T TIGR01000 160 NDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGT 202 (457)
T ss_pred hhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444556666777777777777777777777666666666653
No 200
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.79 E-value=64 Score=39.06 Aligned_cols=8 Identities=88% Similarity=1.198 Sum_probs=4.1
Q ss_pred HHHhHHHH
Q 004901 612 LERRKQAL 619 (724)
Q Consensus 612 ~~~~~~~~ 619 (724)
||||+++|
T Consensus 329 LerRRq~l 336 (1118)
T KOG1029|consen 329 LERRRQAL 336 (1118)
T ss_pred HHHHHHHH
Confidence 45555544
No 201
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=60.47 E-value=67 Score=29.07 Aligned_cols=72 Identities=19% Similarity=0.307 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 621 ERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 621 ~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
+.=.+|-++...|+.+++.=+.-|..+...+...... . ..+.+|++++..+=.++..||.++..+..+|...
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~----~---~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~ 100 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKKA----G---EDAEELKAEVKELKEEIKELEEQLKELEEELNEL 100 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHT----T---CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhC----c---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444555555544445555555555321110 0 4567888888888888888888888887777654
No 202
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=59.83 E-value=1e+02 Score=31.19 Aligned_cols=98 Identities=19% Similarity=0.297 Sum_probs=50.1
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 004901 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (724)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~ 662 (724)
.+--.+.+|+.++...--.+..+.+.+..+.. .+...+..|+..+..|...|.+-......|..-+
T Consensus 85 el~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~----------- 153 (194)
T PF08614_consen 85 ELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDEL----------- 153 (194)
T ss_dssp -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred ccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 34456778888887665566666665554444 4455567788888888888888777777666533
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (724)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (724)
..|-.+..++|+.+.+|+++=.+|=.++-+..
T Consensus 154 ------~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k 185 (194)
T PF08614_consen 154 ------QALQLQLNMLEEKLRKLEEENRELVERWMQRK 185 (194)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667888889998888888888766665443
No 203
>PHA02562 46 endonuclease subunit; Provisional
Probab=59.25 E-value=1.1e+02 Score=35.58 Aligned_cols=34 Identities=9% Similarity=0.180 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCc
Q 004901 675 IALAEADVARLKQKVAELHHQLNQQRQHHYGSLS 708 (724)
Q Consensus 675 ia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~ 708 (724)
|..++.++..++.++..+...+..-...+.+.+|
T Consensus 257 L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C 290 (562)
T PHA02562 257 LNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTC 290 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence 3445555555555555555444433333333333
No 204
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=59.10 E-value=63 Score=35.14 Aligned_cols=81 Identities=21% Similarity=0.345 Sum_probs=50.6
Q ss_pred HHhhhhhHHHHHHHH-----------HHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004901 585 QRLEITKNDLRHRIA-----------KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (724)
Q Consensus 585 ~~~~~~~~~~~~~~~-----------~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~ 653 (724)
.+||..+..|++||. .-|+||..|++.+.= =..|..|+.+|.++|.+-...-..
T Consensus 45 ~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L--------~~~L~~eI~~f~~~l~~~~~~~e~------- 109 (302)
T PF05508_consen 45 KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPL--------TKDLRREIDSFDERLEEAAEKEEL------- 109 (302)
T ss_pred HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhh-------
Confidence 899999999999992 568999999998762 224555666666655543321111
Q ss_pred CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 654 SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (724)
Q Consensus 654 ~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~ 691 (724)
+..-+.--++|..+|.++..|=..+++
T Consensus 110 -----------~~~~~~~~~~i~~V~~~ik~LL~rId~ 136 (302)
T PF05508_consen 110 -----------SKSSENQKESIKKVERYIKDLLARIDD 136 (302)
T ss_pred -----------ccCcchhHHHHHHHHHHHHHHHHHHHh
Confidence 111123335566667776666555554
No 205
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=58.72 E-value=1.6e+02 Score=39.88 Aligned_cols=66 Identities=26% Similarity=0.393 Sum_probs=43.3
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 586 RLEITKNDLRHRIAKEARGNAILQASLERRK----------QALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (724)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~----------~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l 651 (724)
+.|..+.+|...-.+..-.=..||..|+.++ ..+...+..||.++..++.++..|...-..|+.-.
T Consensus 856 ~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~ 931 (1930)
T KOG0161|consen 856 KSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLEEEEEKNAELERKK 931 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444445555554444 35567788899999999999999998888887644
No 206
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=58.16 E-value=1e+02 Score=40.04 Aligned_cols=108 Identities=20% Similarity=0.290 Sum_probs=50.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCC
Q 004901 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVS----RLQEQLQAERDLRAALEVGLSMSS 655 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~----~L~~~L~~e~~~~~~le~~l~~~~ 655 (724)
-+..+++|+......+.++.++ .+.++....+++...++.-.+|++++. .+..+++.++. .|...+..-.
T Consensus 382 y~~~~~~l~~~~~~~~~~~~~~---~~~~~e~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~l~ 455 (1201)
T PF12128_consen 382 YNKLKQKLEEAFNRQQERLQAQ---QDEIREEKAERREQIEEEYQALEQELRQQSQEQLEELQEQRE---QLKSELAELK 455 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3456777777666655555443 333344444444444444334444333 22223332222 2222221111
Q ss_pred CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 656 GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 656 ~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
..+.. |..+.++.++++.++.++....+++.....++.
T Consensus 456 ~~~~~----~~~~~e~~~~~~~~~~~~~~a~~~~~~~~~~~~ 493 (1201)
T PF12128_consen 456 QQLKN----PQYTEEEKEQLEQADKRLEQAQEQQNQAQQAVE 493 (1201)
T ss_pred HHHhC----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12222 334567777777777777666655555544443
No 207
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=57.48 E-value=1.7e+02 Score=27.63 Aligned_cols=59 Identities=29% Similarity=0.385 Sum_probs=28.1
Q ss_pred HHHHHHHhhhhhHHH--HHHHHHHhhhh----hhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 580 EELAIQRLEITKNDL--RHRIAKEARGN----AILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~--~~~~~~~~~~n----~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
.+....++...+.|| |.+|+++|-.| -+++|..-..=..+++.-..++.++..|+..++
T Consensus 19 ~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~ 83 (132)
T PF07926_consen 19 EEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAE 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666555 34556666666 333443333233333333444444444444443
No 208
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=56.38 E-value=1.4e+02 Score=33.48 Aligned_cols=60 Identities=28% Similarity=0.440 Sum_probs=36.1
Q ss_pred HHHHHHHhhhhhH-----HHHHHHHHHhhhh-hhhhhhHHHhH-------HHHHHHHHHHHHHHHHHHHHHHH
Q 004901 580 EELAIQRLEITKN-----DLRHRIAKEARGN-AILQASLERRK-------QALHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 580 ~~~~~~~~~~~~~-----~~~~~~~~~~~~n-~~~~~~~~~~~-------~~~~~~r~~Le~~V~~L~~~L~~ 639 (724)
.++..|+||+.+. +...+..|||-+- |.|||---|+. .+|+..|-.|+.+.++.+++|+.
T Consensus 302 s~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLeekkreleq 374 (442)
T PF06637_consen 302 SDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELEEKKRELEQ 374 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777765 5555666665443 46777654443 35566666666666666655543
No 209
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=56.35 E-value=30 Score=40.40 Aligned_cols=37 Identities=27% Similarity=0.268 Sum_probs=27.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
++-.+..++..++.-++.++..|++++..|+.+|..-
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l 171 (525)
T TIGR02231 135 FNGSEIERLLTEDREAERRIRELEKQLSELQNELNAL 171 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445667777888888888888888888888887544
No 210
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=55.84 E-value=1.6e+02 Score=36.44 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=55.5
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 004901 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF 658 (724)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~ 658 (724)
+=|..|++||..+.+++.+..+= +.+.+.+++.+..+.+.+..|+++-.++.+++++| .+.+|+.|-.
T Consensus 517 ~~~~li~~l~~~~~~~e~~~~~~----~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--a~~~l~~a~~------ 584 (782)
T PRK00409 517 KLNELIASLEELERELEQKAEEA----EALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKE--AQQAIKEAKK------ 584 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH------
Confidence 56778999999888888765422 33555667777777888888888888877777766 4466666543
Q ss_pred CCCCCCChhHHHHHHHHHH
Q 004901 659 SSSRGMDSKTRAELEEIAL 677 (724)
Q Consensus 659 ~~~~~~~~~~~~ll~eia~ 677 (724)
.++++|.++-.
T Consensus 585 --------~~~~~i~~lk~ 595 (782)
T PRK00409 585 --------EADEIIKELRQ 595 (782)
T ss_pred --------HHHHHHHHHHH
Confidence 55777777753
No 211
>PLN02372 violaxanthin de-epoxidase
Probab=55.74 E-value=36 Score=38.26 Aligned_cols=88 Identities=26% Similarity=0.388 Sum_probs=48.0
Q ss_pred CCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Q 004901 576 SSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE----QLQAERDLRAALEVGL 651 (724)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~----~L~~e~~~~~~le~~l 651 (724)
.|+-+--+++|||.+-.+....|.|||. +--.+||+||.++.+ -++.| +|+.+|
T Consensus 355 sCgpep~l~~~l~~~~e~~e~~i~~e~~-----------------~~~~e~~~~v~~~~~~~~~~~~~~-----~~~~~~ 412 (455)
T PLN02372 355 TCGPEPPLLERLEKDVEEGEKTIVKEAR-----------------QIEEELEKEVEKLGKEEESLFKRV-----ALEEGL 412 (455)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 4556666799999999999999988832 112345556655554 22222 344443
Q ss_pred CC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 004901 652 SM-SSGQFSSSRGMDSKTRAELEEIALAEADVARL 685 (724)
Q Consensus 652 ~~-~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~l 685 (724)
.. .....++-..|..+.+++|+++.+.=.+|.+|
T Consensus 413 ~~l~~~~~~f~~~lskee~~~l~~~~~~~~~vek~ 447 (455)
T PLN02372 413 KELEQDEENFLKELSKEEKELLEKLKMEASEVEKL 447 (455)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 21 11122222345556666666666555554443
No 212
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=55.50 E-value=1.6e+02 Score=30.14 Aligned_cols=103 Identities=17% Similarity=0.200 Sum_probs=58.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~ 662 (724)
.|..|-.--.+++.+...--|.=+.+++. -+.|.+==..++++|..|+++|..-..-..+|..+-.+- .
T Consensus 28 lIksLKeei~emkk~e~~~~k~m~ei~~e----N~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl-------~ 96 (201)
T PF13851_consen 28 LIKSLKEEIAEMKKKEERNEKLMAEISQE----NKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARL-------K 96 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H
Confidence 45555555555555544333333333333 223333334578899999999998877777777654321 1
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (724)
.+-.+.+.|=-|-.+|+.-+.+|++.-.+|+...
T Consensus 97 ~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf 130 (201)
T PF13851_consen 97 ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKF 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2344455555566666666666666666666543
No 213
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=55.49 E-value=2.3e+02 Score=31.76 Aligned_cols=104 Identities=27% Similarity=0.295 Sum_probs=63.8
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 004901 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (724)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~---~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~ 662 (724)
|.|..-..|+..|..-+++|+-||..-..-.+.+ .+.+..-++|-..-..|||.|-
T Consensus 282 Kveelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec--------------------- 340 (442)
T PF06637_consen 282 KVEELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAEC--------------------- 340 (442)
T ss_pred HHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------
Confidence 4455556788899999999999885422222222 2222222222222222333332
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCccccc
Q 004901 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY--GSLSDACD 712 (724)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~--~s~~~~~~ 712 (724)
..+++-.|+|=|.|..+--.|++++.+.+.+|-|.+.+-. .|.-|.|.
T Consensus 341 --~rQ~qlaLEEKaaLrkerd~L~keLeekkreleql~~q~~v~~saLdtCi 390 (442)
T PF06637_consen 341 --ARQTQLALEEKAALRKERDSLAKELEEKKRELEQLKMQLAVKTSALDTCI 390 (442)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 2356778889999999999999999999998888776543 33444443
No 214
>PRK09039 hypothetical protein; Validated
Probab=54.76 E-value=2.1e+02 Score=31.74 Aligned_cols=18 Identities=22% Similarity=0.291 Sum_probs=13.7
Q ss_pred HHHHhhhhhHHHHHHHHH
Q 004901 583 AIQRLEITKNDLRHRIAK 600 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~ 600 (724)
.|..++..=.+|+.+|+.
T Consensus 47 ~i~~~~~eL~~L~~qIa~ 64 (343)
T PRK09039 47 EISGKDSALDRLNSQIAE 64 (343)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 467777777888888865
No 215
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=54.51 E-value=2e+02 Score=28.64 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=22.6
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (724)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (724)
+|..-+..-..++..+..|+.||.+|+.+|.+|..
T Consensus 67 l~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~ 101 (177)
T PF07798_consen 67 LQNSRKSEFAELRSENEKLQREIEKLRQELREEIN 101 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333445566666788888888888888765
No 216
>PRK10884 SH3 domain-containing protein; Provisional
Probab=52.91 E-value=1.6e+02 Score=30.38 Aligned_cols=15 Identities=7% Similarity=0.204 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 004901 673 EEIALAEADVARLKQ 687 (724)
Q Consensus 673 ~eia~~E~~v~~le~ 687 (724)
.|+..||+++..++.
T Consensus 153 ~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 153 KKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 217
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=52.85 E-value=17 Score=42.32 Aligned_cols=85 Identities=18% Similarity=0.225 Sum_probs=56.6
Q ss_pred CCCCcEEEEEEEeC---CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEeCC
Q 004901 33 GWKSWKKRWFILTR---TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAET 109 (724)
Q Consensus 33 ~~k~WKKRWFVL~~---~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr~y~fqAdS 109 (724)
..+.|+..|+++-. ..++.|....+.. ....+++.++.+.....+. ..+..++|.++.. ...|+|.|++
T Consensus 509 ~~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~----a~~~iPl~~~~v~~pe~~~-~~D~~~~~k~~~s---~~~~~~~a~~ 580 (623)
T KOG4424|consen 509 AGKTGILAWSVVPKSDPLVDYSYGSPQDVR----AQATIPLPGVEVTIPEFVR-REDLFHVFKLVQS---HLSWHLAADD 580 (623)
T ss_pred cCccceeeeeeccCCCCccccccCCccccc----cccccccCccccCCCcccc-cchhcchhhhhhh---cceeeeccCC
Confidence 34679999998743 4777887776644 2334577777766433221 1223344444432 4689999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 004901 110 SEDLYEWKTALELALA 125 (724)
Q Consensus 110 eeE~~eWi~AL~~ai~ 125 (724)
++-.+.|+..+..|..
T Consensus 581 ~q~qq~wl~~l~~A~~ 596 (623)
T KOG4424|consen 581 EQLQQRWLEVLLLAVS 596 (623)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 9999999999988764
No 218
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=52.73 E-value=78 Score=32.07 Aligned_cols=28 Identities=18% Similarity=0.321 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
..-.++|+++..|+.++..|+.++..+.
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~ 130 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYS 130 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788899988888888888877543
No 219
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.46 E-value=1.8e+02 Score=34.09 Aligned_cols=122 Identities=18% Similarity=0.254 Sum_probs=76.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~ 657 (724)
|--|.|-.-.|.++|+-|. .||-..+.+-+ ..++.|..++.--.+|.++.++=..-+..|++-+++-
T Consensus 573 EqYi~~~dlV~~e~qrH~~-------~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L--- 642 (741)
T KOG4460|consen 573 EQYILKQDLVKEEIQRHVK-------LLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKL--- 642 (741)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---
Confidence 4456666666666666553 23333333333 3355566677777788888888888888888766421
Q ss_pred CCCC-CCCChhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccc
Q 004901 658 FSSS-RGMDSKTRAEL---EEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACD 712 (724)
Q Consensus 658 ~~~~-~~~~~~~~~ll---~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~~~~~ 712 (724)
+..+ +++|+-+.+.+ .|+-.+-.++--|---+..++...+.||.+...+..++-+
T Consensus 643 ~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K 701 (741)
T KOG4460|consen 643 LHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPK 701 (741)
T ss_pred HhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 1222 55666666555 3666666666667777777777777888877766666544
No 220
>KOG3520 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=52.25 E-value=23 Score=44.65 Aligned_cols=45 Identities=18% Similarity=0.339 Sum_probs=37.3
Q ss_pred cCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 85 ~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
.++|-||+|......-..|-+.|.|..|++.|++.|+.++...|.
T Consensus 682 td~ka~FlIs~s~~~pqmYEL~a~T~serntW~~li~~~v~s~~~ 726 (1167)
T KOG3520|consen 682 TDEKAFFLISMSDQGPEMYELVAQSKSERNTWIQLIQDAVASCPR 726 (1167)
T ss_pred ccccceEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhCCc
Confidence 467778888765344578999999999999999999999987654
No 221
>PF11083 Streptin-Immun: Lantibiotic streptin immunity protein; InterPro: IPR021112 Streptococcal species produce a lantibiotic, streptin, in a similar manner to the production of nisin and subtilin by other lactic acid bacteria, in order to compete against competing bacteria within the environment []. The immunity protein protects the bacterium from destruction by its own lantibiotic. In general, there is little homology between the immunity proteins of different genera of bacteria.
Probab=51.34 E-value=69 Score=29.11 Aligned_cols=59 Identities=27% Similarity=0.284 Sum_probs=45.3
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhh----hhHHHhHHHHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 004901 584 IQRLEITKNDLRHRIAKEARGNAILQ----ASLERRKQALHER----------RLALEQDVSRLQEQLQAERD 642 (724)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~----~~~~~~~~~~~~~----------r~~Le~~V~~L~~~L~~e~~ 642 (724)
|.-++..=+++|.|||.==|-=++|= ...+.||-+..+. =-++|.|+..||.||..+.+
T Consensus 1 iA~~di~l~~~~EkiatLNKmAEvLinlks~~~esrklaky~~sKLNltesitle~ve~Ei~~lQ~qL~~~ld 73 (99)
T PF11083_consen 1 IAELDIKLTQTQEKIATLNKMAEVLINLKSDDPESRKLAKYDFSKLNLTESITLEQVEKEIRELQNQLGLYLD 73 (99)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 34577888999999987666666666 6778888777665 33589999999999987654
No 222
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=51.23 E-value=11 Score=43.81 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=29.7
Q ss_pred ceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
++|+|..- .+.++.|.|.+.+|++.|++||+.-|-
T Consensus 446 e~F~IVs~--tgqtWhFeAtt~EERdaWvQai~sqIl 480 (749)
T KOG0705|consen 446 ECFEIVSN--TGQTWHFEATTYEERDAWVQAIQSQIL 480 (749)
T ss_pred ceEEEecc--ccchhhhhhcchhhHHHHHHHHHHHHH
Confidence 48877653 378999999999999999999998774
No 223
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=50.45 E-value=2.4e+02 Score=27.12 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004901 677 LAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 677 ~~E~~v~~le~~~~~l~~~l~ 697 (724)
..+.|+-+.|.++..|+.+|.
T Consensus 130 q~~~e~rkke~E~~kLk~rL~ 150 (151)
T PF11559_consen 130 QYEHELRKKEREIEKLKERLN 150 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456677777777777776664
No 224
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=50.44 E-value=2.6e+02 Score=36.20 Aligned_cols=8 Identities=13% Similarity=0.447 Sum_probs=4.1
Q ss_pred ceEEEEeC
Q 004901 101 RAFTLKAE 108 (724)
Q Consensus 101 r~y~fqAd 108 (724)
..||+-..
T Consensus 110 S~Y~INg~ 117 (1163)
T COG1196 110 SEYYINGE 117 (1163)
T ss_pred cEEEECCc
Confidence 35555444
No 225
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=49.76 E-value=1.8e+02 Score=27.89 Aligned_cols=74 Identities=26% Similarity=0.392 Sum_probs=36.9
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004901 607 ILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLK 686 (724)
Q Consensus 607 ~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le 686 (724)
.+++.++...++.......+++++..++++|+.+.. .++ +...++.-.|+...+.+ |.
T Consensus 36 ~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~--------------~ls-----~~~~~~~~~~l~~~~~~---l~ 93 (158)
T PF03938_consen 36 DAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKA--------------TLS-----EEERQKRQQELQQKEQE---LQ 93 (158)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------------------S-----SHHHHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------------ccc-----hhHHHHHHHHHHHHHHH---HH
Confidence 345555555555555555566666666666665533 011 33334444444444444 55
Q ss_pred HHHHHHHHHHHHHHhh
Q 004901 687 QKVAELHHQLNQQRQH 702 (724)
Q Consensus 687 ~~~~~l~~~l~~~~~~ 702 (724)
+....+..++.++++.
T Consensus 94 ~~~~~~~~~l~~~~~~ 109 (158)
T PF03938_consen 94 QFQQQAQQQLQQEEQE 109 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555566555544
No 226
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=49.54 E-value=2.6e+02 Score=30.14 Aligned_cols=35 Identities=23% Similarity=0.514 Sum_probs=20.2
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (724)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (724)
++-..+...+.+.+....+|..+..|+++|+.|+.
T Consensus 223 l~e~~~~~~~~le~~~~~~ee~~~~L~ekme~e~~ 257 (297)
T PF02841_consen 223 LEEKQKEQEQMLEQQERSYEEHIKQLKEKMEEERE 257 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444455555566666666666666666654
No 227
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.54 E-value=2.4e+02 Score=36.12 Aligned_cols=71 Identities=20% Similarity=0.315 Sum_probs=43.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhh----hhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 004901 583 AIQRLEITKNDLRHRIAKEARG----NAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~----n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~ 654 (724)
..++.|+.+..+..|+ +++|. +-.==..++++....++.+--|-+..++|.+++++.+.-...++.+...+
T Consensus 364 ~~~k~e~~~~~~~e~~-~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~ 438 (1293)
T KOG0996|consen 364 EVEKNEAVKKEIKERA-KELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKA 438 (1293)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhh
Confidence 3445555555554443 23331 11112234555556666677788888899999999888888888876543
No 228
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=48.06 E-value=1.1e+02 Score=27.22 Aligned_cols=40 Identities=25% Similarity=0.430 Sum_probs=31.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004901 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (724)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~ 707 (724)
..|++..++.|+ .|..-|..++.....+|.+-|.+|..+|
T Consensus 31 ~eLs~e~R~~lE------~E~~~l~~~l~~~E~eL~~LrkENrK~~ 70 (85)
T PF15188_consen 31 RELSPEARRSLE------KELNELKEKLENNEKELKLLRKENRKSM 70 (85)
T ss_pred cCCChHHHHHHH------HHHHHHHHHhhccHHHHHHHHHhhhhhH
Confidence 567888887765 6777788888888888888888888776
No 229
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.78 E-value=1e+02 Score=36.44 Aligned_cols=102 Identities=24% Similarity=0.364 Sum_probs=63.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 004901 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER------RLALEQDVSRLQEQLQAERDLRAALEVGLSMSS 655 (724)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~------r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~ 655 (724)
.-++||+.--.+|+..|-.-=|.+..|-+.|++=+...+.. =.+++..+.+|++.|+++......|++=|..-.
T Consensus 429 ~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 429 ETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666777666665566777766666544433221 224888899999999999998888887664321
Q ss_pred --CCCC-CCCCCChhHHHHH--HHHHHHHHHHH
Q 004901 656 --GQFS-SSRGMDSKTRAEL--EEIALAEADVA 683 (724)
Q Consensus 656 --~~~~-~~~~~~~~~~~ll--~eia~~E~~v~ 683 (724)
-.+- +.-.+|-+.-+.+ +.|+.+|++..
T Consensus 509 k~~~lE~sG~g~pvk~ve~~t~~~Ie~~e~~~g 541 (652)
T COG2433 509 KMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYG 541 (652)
T ss_pred HHHhhhhcCCCcceehhhhhhHHHHHhHHHhhc
Confidence 1111 2244565555544 36666666543
No 230
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=47.68 E-value=1.4e+02 Score=27.70 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=4.7
Q ss_pred HHHhhhhhHHHHHHHH
Q 004901 584 IQRLEITKNDLRHRIA 599 (724)
Q Consensus 584 ~~~~~~~~~~~~~~~~ 599 (724)
-.+||+.+++||++.+
T Consensus 4 ~~~l~as~~el~n~La 19 (107)
T PF09304_consen 4 KEALEASQNELQNRLA 19 (107)
T ss_dssp ----------HHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 3578899999998874
No 231
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=47.03 E-value=1.6e+02 Score=34.69 Aligned_cols=78 Identities=26% Similarity=0.391 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-------CCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG-------QFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (724)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~-------~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (724)
...|..||+|+.+|+.++.+ ++.-++.+.....| .+...+.+-.+..=+...|+.+|.++..|..+..-|
T Consensus 105 ~~~ra~~e~ei~kl~~e~~e---lr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl 181 (546)
T KOG0977|consen 105 ARERAKLEIEITKLREELKE---LRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRL 181 (546)
T ss_pred HHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 55688999999999988864 44444444322111 122345566666666777777777777777777666
Q ss_pred HHHHHHHH
Q 004901 693 HHQLNQQR 700 (724)
Q Consensus 693 ~~~l~~~~ 700 (724)
+.+|..-|
T Consensus 182 ~~~l~~~r 189 (546)
T KOG0977|consen 182 REELARAR 189 (546)
T ss_pred HHHHHHHH
Confidence 66665444
No 232
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=46.96 E-value=3.4e+02 Score=34.45 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 672 LEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 672 l~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
-.++..++..+..++.++..+..+|.
T Consensus 914 ~~~l~~l~~~~~~~~~~~~~l~~~l~ 939 (1179)
T TIGR02168 914 RRELEELREKLAQLELRLEGLEVRID 939 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 233
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=46.90 E-value=2.5e+02 Score=27.33 Aligned_cols=73 Identities=22% Similarity=0.318 Sum_probs=58.8
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh
Q 004901 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL---HERRLALEQDVSRLQEQLQAERDL-RAALEVG 650 (724)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~---~~~r~~Le~~V~~L~~~L~~e~~~-~~~le~~ 650 (724)
-++...++.|=..+..|...++-+.++-+-||+.+++-...+ .++-..||+.+..++.+..++..- |-+|.-+
T Consensus 16 ~~~~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 16 REDSFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 456677888888889999999999999999999888665544 556777999999999998877665 7777654
No 234
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=46.86 E-value=2.7e+02 Score=33.20 Aligned_cols=88 Identities=27% Similarity=0.383 Sum_probs=51.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~ 660 (724)
+-.|.+++.+=..|+ .+|..|++.++.-|......+..|++=-.+....++..+.
T Consensus 421 ~~~i~~~~~~ve~l~-------~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~re------------------ 475 (652)
T COG2433 421 EKRIKKLEETVERLE-------EENSELKRELEELKREIEKLESELERFRREVRDKVRKDRE------------------ 475 (652)
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH------------------
Confidence 334455555444444 5677888888877766665555555444444444444333
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (724)
Q Consensus 661 ~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (724)
++++-.+|..||-++.+=+..|..|...|.+-+
T Consensus 476 -------i~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 476 -------IRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666666666666666666555
No 235
>PRK02224 chromosome segregation protein; Provisional
Probab=46.72 E-value=2.1e+02 Score=35.66 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=27.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhcCCCcccc
Q 004901 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR---QHHYGSLSDAC 711 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~---~~~~~s~~~~~ 711 (724)
++....++-.++..+-.++..++..+..+...|..-+ ..+++.+|+..
T Consensus 410 ~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp~C~r~ 460 (880)
T PRK02224 410 AEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQP 460 (880)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCc
Confidence 4555555555555555555556655555555555555 45666777653
No 236
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=46.55 E-value=2.7e+02 Score=30.83 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=52.8
Q ss_pred hhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 004901 602 ARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEAD 681 (724)
Q Consensus 602 ~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~ 681 (724)
--+|+-||.+|+.-++. +-+-|.+...|-..|.+++....+|..--. .++..++.+=.+-| +-
T Consensus 140 ~EEn~~lqlqL~~l~~e----~~Ekeeesq~LnrELaE~layqq~L~~eyQ---atf~eq~~ml~kRQ----------~y 202 (401)
T PF06785_consen 140 REENQCLQLQLDALQQE----CGEKEEESQTLNRELAEALAYQQELNDEYQ---ATFVEQHSMLDKRQ----------AY 202 (401)
T ss_pred HHHHHHHHHhHHHHHHH----HhHhHHHHHHHHHHHHHHHHHHHHHHHHhh---cccccchhhhHHHH----------HH
Confidence 35688888887743332 334577788888888888877777765433 45555544333333 45
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 004901 682 VARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 682 v~~le~~~~~l~~~l~~~~~ 701 (724)
|.+||.||.||-+.+..--+
T Consensus 203 I~~LEsKVqDLm~EirnLLQ 222 (401)
T PF06785_consen 203 IGKLESKVQDLMYEIRNLLQ 222 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67788888887776654333
No 237
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.52 E-value=3.6e+02 Score=34.25 Aligned_cols=109 Identities=13% Similarity=0.187 Sum_probs=65.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 004901 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS 659 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~ 659 (724)
||-+++.|-..|..|...|.+=.+. ..-=++++.....+..++.-+.-|+..++..|.....=-.-++..+.
T Consensus 650 dek~~~~L~~~k~rl~eel~ei~~~-~~e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~El~~~~~~i~------- 721 (1141)
T KOG0018|consen 650 DEKEVDQLKEKKERLLEELKEIQKR-RKEVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELELQRTESEID------- 721 (1141)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 6888999999999999999754431 11122333333444444444444555444444322211111222221
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 660 SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 660 ~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
-++++.-++..+|-..|.++-.|+.++..+...++..
T Consensus 722 ---~~~p~i~~i~r~l~~~e~~~~~L~~~~n~ved~if~~ 758 (1141)
T KOG0018|consen 722 ---EFGPEISEIKRKLQNREGEMKELEERMNKVEDRIFKG 758 (1141)
T ss_pred ---hhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566667888888899999999999988888777654
No 238
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=46.52 E-value=4.3e+02 Score=28.95 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004901 617 QALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
..++++..+|+.++.+|+....
T Consensus 180 ~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 180 PKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666667777776666544
No 239
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=46.08 E-value=3.8e+02 Score=28.52 Aligned_cols=110 Identities=26% Similarity=0.362 Sum_probs=53.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERR-------LALEQDVSRLQEQLQAERDLRAALEVG--- 650 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r-------~~Le~~V~~L~~~L~~e~~~~~~le~~--- 650 (724)
|..++.||.--.+|+. .|--|-..+++-|..+...| .+||-|.+.++.+-..-+.--+-||-|
T Consensus 51 esqL~q~etrnrdl~t-------~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDd 123 (333)
T KOG1853|consen 51 ESQLDQLETRNRDLET-------RNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDD 123 (333)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 3334444444444443 34444444555454443333 346666555544333332222333322
Q ss_pred hCCCC-CCCCCCCCCChhHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 004901 651 LSMSS-GQFSSSRGMDSKTRAELEEIALAE----------ADVARLKQKVAELHHQLN 697 (724)
Q Consensus 651 l~~~~-~~~~~~~~~~~~~~~ll~eia~~E----------~~v~~le~~~~~l~~~l~ 697 (724)
|.++. .+..+-..+-.+.-.-|+-+|.|| +.|-+|+.+..+|++.|.
T Consensus 124 LErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrqela 181 (333)
T KOG1853|consen 124 LERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQELA 181 (333)
T ss_pred HHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221 222222333333344455555555 567889999999999886
No 240
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=46.08 E-value=49 Score=38.64 Aligned_cols=54 Identities=30% Similarity=0.435 Sum_probs=45.4
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHH---HHHHHHHHHHHHHHHHHHHHH
Q 004901 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQA---LHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~---~~~~r~~Le~~V~~L~~~L~~ 639 (724)
-|-+.|+||-.++.+=--+|-|||..++.+|++ |.++-.+||.|+++++..+..
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ 375 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAED 375 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999998889999999999999985 577788888888888876643
No 241
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=45.98 E-value=1.7e+02 Score=31.26 Aligned_cols=29 Identities=31% Similarity=0.514 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 673 EEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
++|..+|++|..|+..|..|+.+...=|+
T Consensus 200 e~i~el~e~I~~L~~eV~~L~~~~~~~Re 228 (258)
T PF15397_consen 200 EEIDELEEEIPQLRAEVEQLQAQAQDPRE 228 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHH
Confidence 46777888888888888888877764444
No 242
>PLN02678 seryl-tRNA synthetase
Probab=45.81 E-value=58 Score=37.48 Aligned_cols=74 Identities=14% Similarity=0.149 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 621 ERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (724)
Q Consensus 621 ~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (724)
++-.+|.++-.+|+.+++.=+.-|..+...+.... .-...+.+|++++..|-+++..||.++..+..+|.+..
T Consensus 33 d~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k-------~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 33 DEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLK-------IAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555543200 01134567778888888888888888888888777654
Q ss_pred h
Q 004901 701 Q 701 (724)
Q Consensus 701 ~ 701 (724)
.
T Consensus 106 ~ 106 (448)
T PLN02678 106 K 106 (448)
T ss_pred H
Confidence 4
No 243
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=45.39 E-value=5.3e+02 Score=29.69 Aligned_cols=34 Identities=32% Similarity=0.397 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
.++|...++.++.++.-|+.++..|..++.+.+.
T Consensus 312 ~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~ 345 (498)
T TIGR03007 312 YQQLQIELAEAEAEIASLEARVAELTARIERLES 345 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666667777777777777777666666655444
No 244
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=45.33 E-value=1.1e+02 Score=34.85 Aligned_cols=73 Identities=19% Similarity=0.281 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (724)
-.+|.++-.+|+.+++.=+.-|..+.+.+..... -...+.+|++++..+-+++..||+++..+..++.+....
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~-------~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALSKEIGQAKR-------KGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444445555555545555555555532000 012456788888889999999999998888888876654
No 245
>PF14992 TMCO5: TMCO5 family
Probab=45.20 E-value=1.3e+02 Score=32.56 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=24.0
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 662 RGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
...-.+.+-+++++|-.|.++++++......+.
T Consensus 112 q~sk~~lqql~~~~~~qE~ei~kve~d~~~v~~ 144 (280)
T PF14992_consen 112 QFSKNKLQQLLESCASQEKEIAKVEDDYQQVHQ 144 (280)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333467788899999999999998765555433
No 246
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=45.19 E-value=1.1e+02 Score=26.78 Aligned_cols=53 Identities=17% Similarity=0.342 Sum_probs=41.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (724)
+...+.++.++|+--+-+...++-+|..=-.+-..-+..-|.||.+|+.+|+.
T Consensus 23 ~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeEI~rLr~eLe~ 75 (79)
T PF08581_consen 23 YKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEEIARLRRELEQ 75 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33477888888888888888888888776677777788888888888888853
No 247
>PRK02224 chromosome segregation protein; Provisional
Probab=45.14 E-value=2.7e+02 Score=34.60 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=8.5
Q ss_pred CCHHHHHHHHHHH
Q 004901 108 ETSEDLYEWKTAL 120 (724)
Q Consensus 108 dSeeE~~eWi~AL 120 (724)
....++..|+..|
T Consensus 109 ~~~~~~~~~i~~l 121 (880)
T PRK02224 109 DGARDVREEVTEL 121 (880)
T ss_pred cChHHHHHHHHHH
Confidence 4556777777665
No 248
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.99 E-value=78 Score=31.15 Aligned_cols=58 Identities=24% Similarity=0.363 Sum_probs=45.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 004901 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ-----ALHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~-----~~~~~r~~Le~~V~~L~~~L~~ 639 (724)
..+..|+..-.+|+.++..--+.+..|.+.|..-.+ .+...-.+|++++..|+.+|+.
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777888888888888888888888776665 4577777889999999888874
No 249
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=44.74 E-value=1.7e+02 Score=37.55 Aligned_cols=71 Identities=25% Similarity=0.342 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
+..-..+.-+|.+||.+|+.|.+-|..+.+-|. + ++-.-+--++|.....++..+..++.++.-+
T Consensus 748 ~r~~~~~~~~vl~Lq~~LEqe~~~r~~~~~eLs-s--------------q~~~~~t~~~Ekq~~~~~~~l~~~K~~~e~~ 812 (1317)
T KOG0612|consen 748 RRSKDQLITEVLKLQSMLEQEISKRLSLQRELK-S--------------QEQEVNTKMLEKQLKKLLDELAELKKQLEEE 812 (1317)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHhh-h--------------HHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455888999999999999999999999876 2 2222222556666666666666666666655
Q ss_pred HhhhcC
Q 004901 700 RQHHYG 705 (724)
Q Consensus 700 ~~~~~~ 705 (724)
..+-.|
T Consensus 813 ~~q~~~ 818 (1317)
T KOG0612|consen 813 NAQLRG 818 (1317)
T ss_pred HHHhhc
Confidence 544444
No 250
>PRK12704 phosphodiesterase; Provisional
Probab=44.73 E-value=4.2e+02 Score=31.25 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 004901 673 EEIALAEADVARLKQKVAELHHQLNQQRQHHYGSL 707 (724)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~ 707 (724)
.+|...+.++..+++++..+..+..++-+.-+|-+
T Consensus 117 ~~Le~re~eLe~~~~~~~~~~~~~~~~l~~~a~lt 151 (520)
T PRK12704 117 KELEQKQQELEKKEEELEELIEEQLQELERISGLT 151 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34555555666666666666666655555544443
No 251
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=44.69 E-value=2.8e+02 Score=26.20 Aligned_cols=47 Identities=32% Similarity=0.437 Sum_probs=24.8
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
.+.+|+..|..|...|.+=.+.|..+++.. .+-..|++++..|+.+.
T Consensus 38 el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~--------~~~~~L~~el~~l~~ry 84 (120)
T PF12325_consen 38 ELARLEAERDELREEIVKLMEENEELRALK--------KEVEELEQELEELQQRY 84 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 355566666666666655555555553332 23334555555555544
No 252
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.51 E-value=7.1e+02 Score=30.90 Aligned_cols=134 Identities=10% Similarity=0.180 Sum_probs=81.9
Q ss_pred cccccchHHHhhhcCCCcHHHHHHHHHHHhc--C---CCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccchhhhH
Q 004901 164 LVVGRPILLALEDIDGGPSFLEKALRFLEKF--G---TKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (724)
Q Consensus 164 ~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~--G---l~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (724)
..|-.+|-.++.....+-.++..+|..+... + ++.+..|-.+.+...++.++-.+-.. +....+++.|--=|
T Consensus 321 ~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~---La~esni~~ILrE~ 397 (968)
T KOG1060|consen 321 TKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSN---LANESNISEILREL 397 (968)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHH---HhhhccHHHHHHHH
Confidence 3445555555655667777888888777642 2 45667778888899898888665432 11122333333333
Q ss_pred HHHHhhCCCC-----------------CCChhhHHHHHHHHhcCCH---HHHHHHHHHHHHccCChhHHHHHHHHHHHHH
Q 004901 239 KHVLRELPSS-----------------PVPASCCTALLEAYKIDRK---EARISAMRSAILETFPEPNRRLLQRILRMMH 298 (724)
Q Consensus 239 K~fLReLPeP-----------------Llp~~l~~~ll~~~~~~~~---~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~ 298 (724)
+.|.+.-+.. =++..+...++..+...+. .+.+..|+.+| +.=|..|..+|.+|..+|.
T Consensus 398 q~YI~s~d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Ll-q~~p~~h~~ii~~La~lld 476 (968)
T KOG1060|consen 398 QTYIKSSDRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLL-QKDPAEHLEILFQLARLLD 476 (968)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHH-hhChHHHHHHHHHHHHHhh
Confidence 4444444321 1334455555665555442 34567788754 6889999999999999886
Q ss_pred Hhh
Q 004901 299 TIS 301 (724)
Q Consensus 299 ~V~ 301 (724)
.+.
T Consensus 477 ti~ 479 (968)
T KOG1060|consen 477 TIL 479 (968)
T ss_pred hhh
Confidence 553
No 253
>PRK03918 chromosome segregation protein; Provisional
Probab=43.87 E-value=3.4e+02 Score=33.65 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 624 LALEQDVSRLQEQLQAERDLRAALE 648 (724)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~le 648 (724)
..++..+.+|+..++....++..++
T Consensus 348 ~~~~~~~~~l~~~~~~l~~~~~~~~ 372 (880)
T PRK03918 348 KELEKRLEELEERHELYEEAKAKKE 372 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666666655554
No 254
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.86 E-value=3.6e+02 Score=35.12 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=25.1
Q ss_pred cccccCcccCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHH
Q 004901 558 AFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKE 601 (724)
Q Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (724)
++||-.=.-..+. .-||.-+++.+-++|+.....|+.-.++.
T Consensus 582 slyGl~LdL~~I~--~pd~~~~ee~L~~~l~~~~~~l~~~~~~~ 623 (1201)
T PF12128_consen 582 SLYGLSLDLSAID--VPDYAASEEELRERLEQAEDQLQSAEERQ 623 (1201)
T ss_pred ccceeEeehhhcC--CchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 7788653222222 22455677777788887777776655443
No 255
>PRK03918 chromosome segregation protein; Provisional
Probab=43.42 E-value=4.1e+02 Score=32.95 Aligned_cols=9 Identities=0% Similarity=-0.237 Sum_probs=4.7
Q ss_pred chhhhcccc
Q 004901 313 AVAACMAPL 321 (724)
Q Consensus 313 NLAivfgP~ 321 (724)
+..+.|.|.
T Consensus 16 ~~~i~f~~g 24 (880)
T PRK03918 16 SSVVEFDDG 24 (880)
T ss_pred CceEecCCC
Confidence 344566653
No 256
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.36 E-value=4.8e+02 Score=31.65 Aligned_cols=114 Identities=24% Similarity=0.222 Sum_probs=73.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHhh-------hhhhhhhhHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 004901 582 LAIQRLEITKNDLRHRIAKEAR-------GNAILQASLERRKQ------ALHERRLALEQDVSRLQEQLQAERDLRAAL- 647 (724)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~-------~n~~~~~~~~~~~~------~~~~~r~~Le~~V~~L~~~L~~e~~~~~~l- 647 (724)
..||.|+-.+..+-.++. |++ -+.+||.-+++-.. .+..+-.-||-++..|+.+|+....++.-+
T Consensus 248 dqlqel~~l~~a~~q~~e-e~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~ 326 (716)
T KOG4593|consen 248 DQLQELEELERALSQLRE-ELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMG 326 (716)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Confidence 346666665555555443 333 34456666554433 345556679999999999999988776652
Q ss_pred ------------------HHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 648 ------------------EVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 648 ------------------e~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (724)
...|+....++..|..+|..+..+|.|.-.==+.+.-.+.++..||-.|
T Consensus 327 ~~~~~~~~~~~~~~e~s~~~~l~~~~~t~~s~~~~~~r~~q~lke~~k~~~~ite~~tklk~l~etl 393 (716)
T KOG4593|consen 327 SLRTPEDLMEKLVNEQSRNANLKNKNSTVTSPARGLERARQLLKEELKQVAGITEEETKLKELHETL 393 (716)
T ss_pred ccCCHHHHHHHHHHHHHHHhhhccccccccCcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1234445567778899999999988876544444555566666666553
No 257
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=43.29 E-value=3e+02 Score=32.78 Aligned_cols=102 Identities=17% Similarity=0.220 Sum_probs=59.9
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 004901 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDV-SRLQEQLQAERDLRAALEVGLSMSSGQ 657 (724)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V-~~L~~~L~~e~~~~~~le~~l~~~~~~ 657 (724)
+=+..|.||+....+++.+|..-+..|..==...-.+-+.+..+-.+|..|+ .-|+... +..++..|..+..
T Consensus 11 dl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~--~~~i~~~l~~a~~----- 83 (593)
T PF06248_consen 11 DLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEI--ENEIQPQLRDAAE----- 83 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHH-----
Confidence 3467899999999999988887777766533333445566777777888888 3333323 2334444444433
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 658 ~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
+.+.|-.|++..+.-+.-|| ++..++.+|.
T Consensus 84 ---------e~~~L~~eL~~~~~~l~~L~-~L~~i~~~l~ 113 (593)
T PF06248_consen 84 ---------ELQELKRELEENEQLLEVLE-QLQEIDELLE 113 (593)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33445555555544444444 4555555554
No 258
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=43.25 E-value=4.9e+02 Score=28.61 Aligned_cols=103 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhh----hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAIL----QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSG 656 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~----~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~ 656 (724)
...+..|......|+..+...-+..+-+ |.-|.+-|..+.+.-.+++.-+.+|.+.-++=..+...++.+=.
T Consensus 171 ~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~---- 246 (312)
T smart00787 171 NSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN---- 246 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q ss_pred CCCCCCCCChhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Q 004901 657 QFSSSRGMDSKTRAELEEIALAEA-----------DVARLKQKVAELHHQLN 697 (724)
Q Consensus 657 ~~~~~~~~~~~~~~ll~eia~~E~-----------~v~~le~~~~~l~~~l~ 697 (724)
+..+++++|+-+|. ||.+|+.++..|+...+
T Consensus 247 ----------~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g 288 (312)
T smart00787 247 ----------KKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTG 288 (312)
T ss_pred ----------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
No 259
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=42.68 E-value=3.5e+02 Score=26.83 Aligned_cols=42 Identities=19% Similarity=0.250 Sum_probs=22.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHH
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER 622 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 622 (724)
...+..++..-+.|+..+..+-+-++.+++.++.-+.....-
T Consensus 80 ~~e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~ 121 (191)
T PF04156_consen 80 QGELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQEL 121 (191)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555555555666666555555555555555444444333
No 260
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.46 E-value=3.5e+02 Score=31.09 Aligned_cols=127 Identities=19% Similarity=0.290 Sum_probs=79.1
Q ss_pred ccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhh-----hhhhhhhHHHhHH-------HHH-HHHHHHHHHHHHHHHHHH
Q 004901 572 ESIDSSGEEELAIQRLEITKNDLRHRIAKEARG-----NAILQASLERRKQ-------ALH-ERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~~~~~~~~~~-------~~~-~~r~~Le~~V~~L~~~L~ 638 (724)
+.++--.+-|+-.++|+..-..++.+|-.=.+- =+.||..+.=|+. +.+ .+-.+|||||.-+-++.+
T Consensus 283 rl~e~l~dgeayLaKL~~~l~~~~~~~~~ltqqwed~R~pll~kkl~Lr~~l~~~e~e~~e~~~IqeleqdL~a~~eei~ 362 (521)
T KOG1937|consen 283 RLIEALDDGEAYLAKLMGKLAELNKQMEELTQQWEDTRQPLLQKKLQLREELKNLETEDEEIRRIQELEQDLEAVDEEIE 362 (521)
T ss_pred HHHHhcCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777888887777777666322111 1223333222222 011 223569999999988888
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 639 AERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 639 ~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
.-..+++-|-++|..-+-.++ --..-.-++|+..+|--.++||.+.=..-.+|+.|++..
T Consensus 363 ~~eel~~~Lrsele~lp~dv~-rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~ 422 (521)
T KOG1937|consen 363 SNEELAEKLRSELEKLPDDVQ-RKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSE 422 (521)
T ss_pred hhHHHHHHHHHHHhcCCchhH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888864322111 111223568889999999999998888888888777743
No 261
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=42.05 E-value=2.7e+02 Score=34.21 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=36.2
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLR 644 (724)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~ 644 (724)
+|-..|.++|.-+ +|+|-||. .+...+..|...|..++.||.+||+.+..++.+-
T Consensus 327 kltrqkadirc~L-lEarrk~e---gfddk~~eLEKkrd~al~dvr~i~e~k~nve~el 381 (1265)
T KOG0976|consen 327 KLTRQKADIRCAL-LEARRKAE---GFDDKLNELEKKRDMALMDVRSIQEKKENVEEEL 381 (1265)
T ss_pred HHHHHHHHHHHHH-HHHHHhhc---chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3333444444332 45555553 4555666888889999999999999998765543
No 262
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=42.04 E-value=3.1e+02 Score=33.05 Aligned_cols=99 Identities=17% Similarity=0.235 Sum_probs=57.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 004901 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (724)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~ 661 (724)
..|+.|+....+++.+|++--..=..++. +-..+.+....|+.++.+++++..+-..+..+++.|
T Consensus 421 e~i~~l~e~l~~l~~~l~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 485 (650)
T TIGR03185 421 EQIAQLLEELGEAQNELFRSEAEIEELLR----QLETLKEAIEALRKTLDEKTKQKINAFELERAITIA----------- 485 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH-----------
Confidence 37788888888888777643222222222 222344444456666666666665555555555442
Q ss_pred CCCChhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Q 004901 662 RGMDSKTRAELEEIA--LAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 662 ~~~~~~~~~ll~eia--~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
.++++.|.++. +.+.-+..||..+.+.-.+|.+.
T Consensus 486 ----~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k 521 (650)
T TIGR03185 486 ----DKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRK 521 (650)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 24466666553 34455677888888888888764
No 263
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=41.89 E-value=2.3e+02 Score=33.81 Aligned_cols=89 Identities=22% Similarity=0.329 Sum_probs=45.6
Q ss_pred CCCCchHHH---HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 004901 574 IDSSGEEEL---AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRL---QEQLQAERDLRAAL 647 (724)
Q Consensus 574 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L---~~~L~~e~~~~~~l 647 (724)
.++|.+-+. -..|||..|.-||-+.. +|--.++.++...++.-.-||.--.+| .++||.|.--|..|
T Consensus 100 ~~s~~~~~~yQerLaRLe~dkesL~LQvs-------vLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsL 172 (861)
T KOG1899|consen 100 TVSCPEYPEYQERLARLEMDKESLQLQVS-------VLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSL 172 (861)
T ss_pred CccCCcchHHHHHHHHHhcchhhheehHH-------HHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhH
Confidence 344555433 35577777777765542 222233444444443333333333333 45566665555555
Q ss_pred HHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004901 648 EVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLK 686 (724)
Q Consensus 648 e~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le 686 (724)
|. +--.|++||.-|-.-.+-||
T Consensus 173 ET-----------------qKlDLmaevSeLKLkltalE 194 (861)
T KOG1899|consen 173 ET-----------------QKLDLMAEVSELKLKLTALE 194 (861)
T ss_pred HH-----------------HHhHHHHHHHHhHHHHHHHH
Confidence 53 44567777766665555555
No 264
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=41.69 E-value=1.2e+02 Score=34.74 Aligned_cols=64 Identities=30% Similarity=0.321 Sum_probs=35.5
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHH-HhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhC
Q 004901 587 LEITKNDLRHRIAKEARGNAILQASLE-RRKQALHERRLALEQDV-SRLQEQLQAERDLRAALEVGLS 652 (724)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~-~~~~~~~~~r~~Le~~V-~~L~~~L~~e~~~~~~le~~l~ 652 (724)
.|.-+++.|.-+ |-|-.||-+|..-= .-|.+|.--++. |+|| +.|++||+.|+.+|.+++.-|.
T Consensus 501 ~eTll~niq~ll-kva~dnar~qekQiq~Ek~ELkmd~lr-erelreslekql~~ErklR~~~qkr~k 566 (641)
T KOG3915|consen 501 IETLLTNIQGLL-KVAIDNARAQEKQIQLEKTELKMDFLR-ERELRESLEKQLAMERKLRAIVQKRLK 566 (641)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666544 44567887774311 112222211111 2232 4588888889998888887664
No 265
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms]
Probab=41.64 E-value=21 Score=42.12 Aligned_cols=155 Identities=14% Similarity=-0.008 Sum_probs=94.6
Q ss_pred CCCCCCCcccccchHHHhhhcC-----CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHH-hcC-CcCCCCCC
Q 004901 157 DKRPVKSLVVGRPILLALEDID-----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEY-EQG-KTEFSADE 229 (724)
Q Consensus 157 ~k~~~~~~vFG~pL~~ll~~~~-----~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~l-d~g-~~~~~~~~ 229 (724)
...+.+..+|+ .|..+..... -.+.-..+|..+....+....|.|+.+|. .+..++..- +.+ ++....+.
T Consensus 31 ~~~pl~~~~e~-~l~~~~~~ek~~~~r~~~~~~~~~~~~~~~~s~~~~~~~~~~~~--~~~~~~~e~e~~~~kie~~~d~ 107 (577)
T KOG4270|consen 31 VVFPLRKIIEV-ELPNIRKEEKNLQRRVSDMDSEQLRLFQAQKSSGEEGLFRLPGA--KIDTLKEEEEECGMKIEQPTDQ 107 (577)
T ss_pred ccCcccchhhh-hhhHHHHHHHHHHhhhhhcchhhhhhhhhhhhhhhccccccCcc--hhhhhhchHHhhcCccccCcch
Confidence 34555566777 5544433211 13555678888888889999999999993 344444433 333 36667777
Q ss_pred CccchhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHH----HHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccc
Q 004901 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEA----RISAMRSAILETFPEPNRRLLQRILRMMHTISSHAH 305 (724)
Q Consensus 230 d~h~vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~----ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~ 305 (724)
..+++.++++.+++.+ +|.++.-|+..+.......... ...+++. ...|..|+ +-+++.||... .
T Consensus 108 ~~~~~~~f~~~~~~~~--f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~---s~~~~~n~--vp~i~~l~~~~----~ 176 (577)
T KOG4270|consen 108 RHADHVTFDRKEGEYL--FLGLPVEFQPDYHRRALSASETVFGVSTEAMQL---SYDPRGNF--VPLILHLLQSG----R 176 (577)
T ss_pred hhhhhhhhhhhcchhh--hccchhhhccccccccccchhhhhcchHHhhhc---ccccCCCc--chhhhHhhhhh----h
Confidence 8899999999999998 7777766665554332222111 2234443 35677777 66677777654 3
Q ss_pred cCCCCccchhhhccccccCC
Q 004901 306 ENRMTPSAVAACMAPLLLRP 325 (724)
Q Consensus 306 ~NkMt~~NLAivfgP~Llr~ 325 (724)
.+.|.-.+...+|.++.-.+
T Consensus 177 l~~e~Gl~eEGlFRi~~~~s 196 (577)
T KOG4270|consen 177 LLLEGGLKEEGLFRINGEAS 196 (577)
T ss_pred hhhhcCccccceeccCCCch
Confidence 34455555556666555433
No 266
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=41.60 E-value=3.6e+02 Score=26.68 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=54.1
Q ss_pred HhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCC--CChhHHHHHHHHHHH
Q 004901 601 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRG--MDSKTRAELEEIALA 678 (724)
Q Consensus 601 ~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~--~~~~~~~ll~eia~~ 678 (724)
-.+-+..||+.|...+.++.+.=.+|.+-..+.....+.-...+..|..-+. ..++|++-.+ .-...=.+..+++.+
T Consensus 13 r~R~~~rL~~~L~~~r~al~~~~a~~~~~~a~v~~~~~~l~~~~~ri~~m~~-gg~~f~i~~~~~~~~~r~~l~~~~~~~ 91 (158)
T PF09486_consen 13 RRRRERRLRARLAAQRRALAAAEAELAEQQAEVEAARQRLRAHDARIDAMMT-GGAPFSIDEYLALRRYRDVLEERVRAA 91 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777766555555555444444444444444443344444443333 2223332222 222334566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004901 679 EADVARLKQKVAELHHQLNQQR 700 (724)
Q Consensus 679 E~~v~~le~~~~~l~~~l~~~~ 700 (724)
|.++..|.+.|..-+.+|...+
T Consensus 92 e~~~a~l~~~l~~~~~~ia~~~ 113 (158)
T PF09486_consen 92 EAELAALRQALRAAEDEIAATR 113 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777776544
No 267
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=41.59 E-value=4.7e+02 Score=30.81 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004901 617 QALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L 637 (724)
+.+.++|.++++++...+.+|
T Consensus 58 eE~~~~R~Ele~el~~~e~rL 78 (514)
T TIGR03319 58 EEVHKLRAELERELKERRNEL 78 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445667777877766555555
No 268
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.54 E-value=2.1e+02 Score=28.47 Aligned_cols=39 Identities=18% Similarity=0.249 Sum_probs=32.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
.=|.++..+-.+|..+|..+..++.++......+..|..
T Consensus 142 ~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~ 180 (218)
T cd07596 142 IKPAKVEELEEELEEAESALEEARKRYEEISERLKEELK 180 (218)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999988888887776654
No 269
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=41.47 E-value=88 Score=28.11 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHhhC
Q 004901 623 RLALEQDVSRLQEQLQA------ERDLRAALEVGLS 652 (724)
Q Consensus 623 r~~Le~~V~~L~~~L~~------e~~~~~~le~~l~ 652 (724)
...|+.++++||+||.. |+==|.||+.+|.
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~AlKaGL~ 39 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIALKAGLG 39 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 45788888999988853 6777888888774
No 270
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=41.28 E-value=1.5e+02 Score=31.50 Aligned_cols=27 Identities=33% Similarity=0.619 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 625 ALEQDVSRLQEQLQAERDLRAALEVGL 651 (724)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~le~~l 651 (724)
+|+.+|..|+.+|++.+.|-.-||.-|
T Consensus 3 ~lq~~l~~l~~~~~~~~~L~~kLE~DL 29 (248)
T PF08172_consen 3 ELQKELSELEAKLEEQKELNAKLENDL 29 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666666666544
No 271
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=40.91 E-value=5.5e+02 Score=33.22 Aligned_cols=111 Identities=14% Similarity=0.151 Sum_probs=65.6
Q ss_pred HHHHHHHhhhhhHHHHHHH---HHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhCCC
Q 004901 580 EELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAER--DLRAALEVGLSMS 654 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~---~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~--~~~~~le~~l~~~ 654 (724)
.++....|++-..-|..++ ..|.-+|..+|.-+..|..-+..+-..||+.|..||.++..-+ .-..+++.+-...
T Consensus 171 ~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~ 250 (1109)
T PRK10929 171 AQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLA 250 (1109)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455555444444444 3466788888888888887778888889999999998886522 2233444443210
Q ss_pred CCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 655 SGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 655 ~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
.-....|+.++++++.-..|=.++...-++++.|..
T Consensus 251 ----~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~ 286 (1109)
T PRK10929 251 ----EQSGDLPKSIVAQFKINRELSQALNQQAQRMDLIAS 286 (1109)
T ss_pred ----HhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011235555777665555555555555555554433
No 272
>PRK11519 tyrosine kinase; Provisional
Probab=40.82 E-value=3.7e+02 Score=32.87 Aligned_cols=80 Identities=20% Similarity=0.311 Sum_probs=45.1
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Q 004901 604 GNAILQASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADV 682 (724)
Q Consensus 604 ~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~-e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v 682 (724)
.++-++..+++|.+....-..-|++.+.+|+++|+. |..+...-. ..+.+. ++..++.+|..++.++..+
T Consensus 250 ~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~-----~~~~vd----~~~ea~~~l~~~~~l~~ql 320 (719)
T PRK11519 250 TRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQ-----DKDSVD----LPLEAKAVLDSMVNIDAQL 320 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcCCCC----chHHHHHHHHHHHHHHHHH
Confidence 444555555655555666666677777777777764 333322211 112221 3466677777777666666
Q ss_pred HHHHHHHHHH
Q 004901 683 ARLKQKVAEL 692 (724)
Q Consensus 683 ~~le~~~~~l 692 (724)
..|+.+..+|
T Consensus 321 ~~l~~~~~~l 330 (719)
T PRK11519 321 NELTFKEAEI 330 (719)
T ss_pred HHHHHHHHHH
Confidence 6665555554
No 273
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=40.77 E-value=2.8e+02 Score=33.94 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
..||.+.+-||+|-.-|.++|..|+.
T Consensus 93 ~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 93 ARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777664
No 274
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.67 E-value=4e+02 Score=27.49 Aligned_cols=121 Identities=21% Similarity=0.314 Sum_probs=0.0
Q ss_pred ccccCcccCCCCc-ccCCCCch-HHHHHHHhhhhhHHHHHHHHHHhhhh------hhhhhhHHHhHH-------------
Q 004901 559 FWGRSNARKTSSV-ESIDSSGE-EELAIQRLEITKNDLRHRIAKEARGN------AILQASLERRKQ------------- 617 (724)
Q Consensus 559 ~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~n------~~~~~~~~~~~~------------- 617 (724)
++|.+..++..+. |.|+---| +|.++.|=|--....+..+...||-+ +.|||- +||+
T Consensus 7 ~FG~~k~~~~~t~~eaI~kLrEteemL~KKqe~Le~ki~~e~e~~A~k~~tkNKR~AlqaL--krKK~~E~qL~qidG~l 84 (221)
T KOG1656|consen 7 LFGGMKQEAKPTPQEAIQKLRETEEMLEKKQEFLEKKIEQEVENNARKYGTKNKRMALQAL--KRKKRYEKQLAQIDGTL 84 (221)
T ss_pred HhCcccccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHhhHH
Q ss_pred -HHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhH
Q 004901 618 -ALHERRLALEQ----------------------------DVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKT 668 (724)
Q Consensus 618 -~~~~~r~~Le~----------------------------~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~ 668 (724)
.++..|.+||. .|..|=....+.+.+-.=+-.|+.++-|.-. .---
T Consensus 85 ~tie~Qr~alEnA~~n~Evl~~m~~~A~AmK~~h~~mDiDkVdd~MdeI~eQqe~a~eIseAiS~Pvg~~a-----~~DE 159 (221)
T KOG1656|consen 85 STIEFQREALENANTNTEVLDAMGSAAKAMKAAHKNMDIDKVDDLMDEIAEQQEVAEEISEAISAPVGFGA-----DFDE 159 (221)
T ss_pred HHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHhCcccccc-----ccCH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLK 686 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le 686 (724)
-+|.+|+-.||-+....+
T Consensus 160 DEL~~ELdeLeqeeld~~ 177 (221)
T KOG1656|consen 160 DELMAELDELEQEELDKE 177 (221)
T ss_pred HHHHHHHHHHHHHHHHHH
No 275
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=40.63 E-value=1.8e+02 Score=28.96 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=49.2
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 004901 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA----LEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEAD 681 (724)
Q Consensus 606 ~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~----le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~ 681 (724)
+.|++..++=+..+..-|..|.+|+.+|+.-++-+.+++.. ....++.. |-.=-..+=.||+-|..+
T Consensus 76 ~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~k---------i~e~~~ki~~ei~~lr~~ 146 (177)
T PF07798_consen 76 AELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELK---------IQELNNKIDTEIANLRTE 146 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHH
Confidence 45666777777777778888888888888877777665543 12222211 111123456778889999
Q ss_pred HHHHHHHHH
Q 004901 682 VARLKQKVA 690 (724)
Q Consensus 682 v~~le~~~~ 690 (724)
|..+++.+.
T Consensus 147 iE~~K~~~l 155 (177)
T PF07798_consen 147 IESLKWDTL 155 (177)
T ss_pred HHHHHHHHH
Confidence 998777654
No 276
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=40.45 E-value=1.2e+02 Score=28.48 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004901 674 EIALAEADVARLKQKVAELH 693 (724)
Q Consensus 674 eia~~E~~v~~le~~~~~l~ 693 (724)
||..|+..|..||.++..|.
T Consensus 97 ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 97 EIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 56666777777777776664
No 277
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=40.31 E-value=2.7e+02 Score=30.70 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004901 619 LHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~~ 639 (724)
..+.+.-|+++|.+++++|.+
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ 188 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNA 188 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666788888888888864
No 278
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=40.17 E-value=2.1e+02 Score=35.09 Aligned_cols=62 Identities=24% Similarity=0.318 Sum_probs=32.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhh----hhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 581 ELAIQRLEITKNDLRHRIAKEAR----GNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAA 646 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~----~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~ 646 (724)
+..|+.|.....+|+.+++.... .+-.+++ -+.++.+-+.++++++.++...++.|...-.+
T Consensus 287 ~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~----l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~ 352 (754)
T TIGR01005 287 EDLIQRLRERQAELRATIADLSTTMLANHPRVVA----AKSSLADLDAQIRSELQKITKSLLMQADAAQA 352 (754)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888877764322 1122222 13333444444555555555555444443333
No 279
>PLN02320 seryl-tRNA synthetase
Probab=39.96 E-value=1.5e+02 Score=34.68 Aligned_cols=37 Identities=22% Similarity=0.274 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (724)
..+.+|++|+..|-.++..||+++..+..+|.+.-..
T Consensus 130 ~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~ 166 (502)
T PLN02320 130 SERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQS 166 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3567888888888888888888888888887776543
No 280
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=39.91 E-value=1.3e+02 Score=29.78 Aligned_cols=66 Identities=21% Similarity=0.259 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (724)
.|..|+.+|..|.+.|+.+|...|.-+..- --.+-..+++|..-|+.||+++-.|+.++..+..+.
T Consensus 54 ~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~------Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 54 LLREDNEQLETQYEREKELRKQAEEELLEL------EDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 456677777777777777777666432100 012344667788888888888888887777766654
No 281
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=39.84 E-value=5.1e+02 Score=27.85 Aligned_cols=84 Identities=15% Similarity=0.258 Sum_probs=47.1
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004901 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQK 688 (724)
Q Consensus 609 ~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~ 688 (724)
++....+.+++...+.+|+.++..+++++..-...-..=..+- .-+-....-+..++.-+.+..+++++..+..+
T Consensus 130 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~-----~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~ 204 (301)
T PF14362_consen 130 QASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGT-----GGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQ 204 (301)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455555666666666666666666655443322222211 11112233456677777777777777777777
Q ss_pred HHHHHHHHH
Q 004901 689 VAELHHQLN 697 (724)
Q Consensus 689 ~~~l~~~l~ 697 (724)
......+|.
T Consensus 205 ~~~~~~~l~ 213 (301)
T PF14362_consen 205 IDAAIAALD 213 (301)
T ss_pred HHHHHHHHH
Confidence 666666665
No 282
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=39.79 E-value=98 Score=26.53 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 666 SKTRAELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
.+++.++.-|++|..+|..|+++...|.
T Consensus 11 ~ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 11 EKIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 5788999999999999999999855554
No 283
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.70 E-value=81 Score=36.41 Aligned_cols=62 Identities=16% Similarity=0.232 Sum_probs=41.3
Q ss_pred ccCCCCchHHHHHHHhhhhh---HHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 572 ESIDSSGEEELAIQRLEITK---NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
.-|+-..++-+..-+|+... .+|+.+|+++-++...+. ++++.+.++=.+||.|+.+|+.|+
T Consensus 56 ~vV~~~FddkVnqSALteqQ~kasELEKqLaaLrqElq~~s----aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 56 GVVDTTFDDKVRQHATTEMQVTAAQMQKQYEEIRRELDVLN----KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred ceecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666554 788888887632222222 555666666668999999999998
No 284
>PRK04863 mukB cell division protein MukB; Provisional
Probab=39.63 E-value=3.8e+02 Score=35.79 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 674 EIALAEADVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (724)
.++.++.++..||+++..+...+.+-++.
T Consensus 450 klee~e~qL~elE~kL~~lea~leql~~~ 478 (1486)
T PRK04863 450 KEQEATEELLSLEQKLSVAQAAHSQFEQA 478 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666666554443
No 285
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=39.61 E-value=2.9e+02 Score=25.25 Aligned_cols=74 Identities=26% Similarity=0.306 Sum_probs=47.7
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCh--hHHHHHHHHHHHHHHHH
Q 004901 606 AILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDS--KTRAELEEIALAEADVA 683 (724)
Q Consensus 606 ~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~--~~~~ll~eia~~E~~v~ 683 (724)
++++..+.++ .+.++.-.+|++.+.+...+|+. ||.-+.+ +|. .+.+|=-+|+-++.++.
T Consensus 21 ~~~~~~l~~~-~a~~~~~~~l~~~~~~~~~Rl~~-------lE~~l~~----------LPt~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 21 GIFWLWLRRT-YAKREDIEKLEERLDEHDRRLQA-------LETKLEH----------LPTRDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHH-------HHHHHHh----------CCCHHHHHHHHHHHHHHHhHHH
Confidence 4556666553 46677777788888877777653 5555532 333 34566667777777777
Q ss_pred HHHHHHHHHHHHHH
Q 004901 684 RLKQKVAELHHQLN 697 (724)
Q Consensus 684 ~le~~~~~l~~~l~ 697 (724)
.|+.++..+..++.
T Consensus 83 ~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 83 ELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766543
No 286
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=39.59 E-value=3.6e+02 Score=28.33 Aligned_cols=68 Identities=21% Similarity=0.189 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 004901 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ-LN 697 (724)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~-l~ 697 (724)
..-+.+|.+|-..+-++|+.=-.=...||+.+..+ =..-......|..+.+++..|+.+|+.++.. |+
T Consensus 38 ~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa----------~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lg 106 (230)
T PF10146_consen 38 RKEMEELLQERMAHVEELRQINQDINTLENIIKQA----------ESERNKRQEKIQRLYEEYKPLKDEINELRKEYLG 106 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33344566665555555533211122355555321 1133457788889999999999999999988 55
No 287
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=39.42 E-value=3.6e+02 Score=29.56 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=13.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 613 ERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
++.+..+.....+||.+.++|+++-.
T Consensus 70 E~e~~~l~~el~~le~e~~~l~~eE~ 95 (314)
T PF04111_consen 70 EKEREELDQELEELEEELEELDEEEE 95 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555556666665554433
No 288
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=39.40 E-value=4.1e+02 Score=29.43 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 671 ELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 671 ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
...+++.+++++..++.++..++.+|.
T Consensus 244 ~~~~l~~~~~~l~~~~~~l~~~~~~l~ 270 (423)
T TIGR01843 244 VLEELTEAQARLAELRERLNKARDRLQ 270 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555555555555555555443
No 289
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=39.24 E-value=32 Score=41.96 Aligned_cols=79 Identities=27% Similarity=0.373 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC----CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS----SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (724)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~----~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (724)
+.++.+|+..|..|.+.|..-......++..+........ ....+......|-.+|..||.++.+|++++..|..+
T Consensus 453 ~~~~~ele~~l~~l~~~l~~~k~~~~~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~ 532 (722)
T PF05557_consen 453 DEYKAELEAQLEELEEELSEQKQRNETLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESE 532 (722)
T ss_dssp -----------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666666665555555555554432211111 112344566678889999999999999999999999
Q ss_pred HHH
Q 004901 696 LNQ 698 (724)
Q Consensus 696 l~~ 698 (724)
|.+
T Consensus 533 l~~ 535 (722)
T PF05557_consen 533 LEK 535 (722)
T ss_dssp HHH
T ss_pred HHH
Confidence 975
No 290
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=39.06 E-value=1.1e+02 Score=25.34 Aligned_cols=64 Identities=20% Similarity=0.268 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (724)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (724)
++.|+.||+++|.+=..--..++.-|++..-.-.-|..+= ...-+-++-++.++..|++.+..|
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP~eVv---e~er~kl~~~~~~~~~l~~~l~~L 65 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAPEEVV---EKEREKLEELEEELEKLEEALEQL 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS-CCHH---HHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCCHHHH---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677777777777655555555555543311111233322 333344555677777777777665
No 291
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=38.92 E-value=3.6e+02 Score=28.90 Aligned_cols=85 Identities=14% Similarity=0.184 Sum_probs=48.5
Q ss_pred HHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHH
Q 004901 596 HRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE---QLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAEL 672 (724)
Q Consensus 596 ~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~---~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll 672 (724)
..|+++.+.++- .+|.+.++.+-..|+.+..+|+. .+|...+++.. .+++.
T Consensus 155 ~~i~~~~~~~e~-----d~rnq~l~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~---------------------~~e~~ 208 (264)
T PF07246_consen 155 QLIKEKTQEREN-----DRRNQILSHEISNLTNELSNLRNDIDKFQEREDEKIL---------------------HEELE 208 (264)
T ss_pred HHHHHHhhchhh-----hhHHHHHHHHHHHhhhhHHHhhchhhhhhhhhhHHHH---------------------HHHHH
Confidence 344444444444 56666666555566666666665 33433333321 24555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004901 673 EEIALAEADVARLKQKVAELHHQLNQQRQHHYGS 706 (724)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s 706 (724)
+.++-+..+..+|+.+..+.+.....+|+.+.-+
T Consensus 209 ~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 209 ARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 6666666677777777777777666666665443
No 292
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.83 E-value=4.6e+02 Score=27.44 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
+.|=-|.+.||+..-+|..+|.+|+.++.
T Consensus 173 k~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 173 KRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 44445556666666666666666665543
No 293
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.67 E-value=2.4e+02 Score=32.61 Aligned_cols=30 Identities=17% Similarity=0.275 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (724)
+++-.|+..|..++..|...+.+|..||..
T Consensus 112 ~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~ 141 (472)
T TIGR03752 112 QELTKEIEQLKSERQQLQGLIDQLQRRLAG 141 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667778888888889999999999888853
No 294
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=38.56 E-value=5.4e+02 Score=32.80 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhcCC
Q 004901 183 FLEKALRFLEKFGT 196 (724)
Q Consensus 183 il~~~i~~L~~~Gl 196 (724)
-...+..++...|+
T Consensus 118 ~~~~~~~~l~~~~~ 131 (1164)
T TIGR02169 118 RLSEIHDFLAAAGI 131 (1164)
T ss_pred cHHHHHHHHHHcCC
Confidence 34444445554444
No 295
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=38.53 E-value=96 Score=29.70 Aligned_cols=52 Identities=23% Similarity=0.366 Sum_probs=33.8
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (724)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~ 649 (724)
-|+-|.+||.|||. ||. -++.+.--...|-.-|+-|+..|..|+.--.-|..
T Consensus 23 WeiERaEmkarIa~-------LEG----E~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~~ 74 (134)
T PF08232_consen 23 WEIERAEMKARIAF-------LEG----ERRGQENLKKDLKRRIKMLEYALKQERAKYKKLKY 74 (134)
T ss_pred hHHHHHHHHHHHHH-------HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 35678899999973 333 33444444556666677888888888776554443
No 296
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=38.40 E-value=3.7e+02 Score=32.22 Aligned_cols=23 Identities=13% Similarity=0.458 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 004901 667 KTRAELEEIALAEADVARLKQKV 689 (724)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~ 689 (724)
.++..+.+|..+..++-.++..+
T Consensus 441 e~~~~~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 441 ESKQKLQEIKELREEIKEIEEEI 463 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555554444
No 297
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=38.35 E-value=7.4e+02 Score=29.41 Aligned_cols=39 Identities=15% Similarity=0.181 Sum_probs=18.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHH
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL 619 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 619 (724)
+..+++.+--+.+|......=-+.++.|+..+++-+.+|
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL 180 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAEL 180 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555566666444333334444444444444444
No 298
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=38.35 E-value=2.3e+02 Score=29.33 Aligned_cols=74 Identities=20% Similarity=0.240 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 625 ALEQDVSRLQEQLQAERDLRAALEVG-LSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~le~~-l~~~~~~~~-~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
.|..|+++|+.+|.+|.+--.|=-+- |+--.|... .+.+=+.+.+|. . +-++.||.+|..++.+.+.|-.|-..
T Consensus 127 klkndlEk~ks~lr~ei~~~~a~~rLdLNLEkgr~~d~~~~~~l~~~e~-s--~kId~Ev~~lk~qi~s~K~qt~qw~~ 202 (220)
T KOG3156|consen 127 KLKNDLEKLKSSLRHEISKTTAEFRLDLNLEKGRIKDESSSHDLQIKEI-S--TKIDQEVTNLKTQIESVKTQTIQWLI 202 (220)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhceeecchhhccccchhhhcchhHhHH-H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37789999999999998743331110 122223221 122222222221 1 67788999999999999888877543
No 299
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=38.33 E-value=5.4e+02 Score=32.74 Aligned_cols=19 Identities=0% Similarity=-0.193 Sum_probs=10.8
Q ss_pred eeecCCCHHHHHHHHHHHh
Q 004901 201 ILRQAADVEEVDRRVQEYE 219 (724)
Q Consensus 201 IFR~sg~~~~v~~L~~~ld 219 (724)
.|++.|.......+...+.
T Consensus 109 ~~~~n~~~~~~~~~~~~l~ 127 (1164)
T TIGR02169 109 YYYLNGQRVRLSEIHDFLA 127 (1164)
T ss_pred eEEECCccccHHHHHHHHH
Confidence 4666666555555555444
No 300
>KOG2070 consensus Guanine nucleotide exchange factor [Nucleotide transport and metabolism]
Probab=38.03 E-value=44 Score=38.40 Aligned_cols=58 Identities=29% Similarity=0.370 Sum_probs=41.7
Q ss_pred HHHHhhhhh--hhhh-hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 004901 598 IAKEARGNA--ILQA-SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSS 655 (724)
Q Consensus 598 ~~~~~~~n~--~~~~-~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~ 655 (724)
|-+|+++|- +||. ++-----++.+.-.+|+||-++++++|.+|+..|+-||.-|-...
T Consensus 597 ~~ee~r~~~~~vleekslvdtvyalkd~v~~lqqd~~kmkk~leeEqkaRrdLe~ll~k~l 657 (661)
T KOG2070|consen 597 LMEETRSNGQSVLEEKSLVDTVYALKDEVSELQQDNKKMKKVLEEEQKARRDLEKLLRKML 657 (661)
T ss_pred HHHhcccccceeecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777763 3332 122223367777788999999999999999999999998775443
No 301
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=37.87 E-value=2.3e+02 Score=30.22 Aligned_cols=60 Identities=20% Similarity=0.281 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 614 RRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 614 ~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
|+|.+...+|.-+=+-++||+++- +.|..+..-|+.++.+|..+|.+++
T Consensus 213 rnreaa~Kcr~rkLdrisrLEdkv-------------------------------~~lk~~n~~L~~~l~~l~~~v~e~k 261 (279)
T KOG0837|consen 213 RNREAASKCRKRKLDRISRLEDKV-------------------------------KTLKIYNRDLASELSKLKEQVAELK 261 (279)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-------------------------------hhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 455666666766666666666543 3344445556777888888888777
Q ss_pred HHHHHHHhhhc
Q 004901 694 HQLNQQRQHHY 704 (724)
Q Consensus 694 ~~l~~~~~~~~ 704 (724)
+++-......|
T Consensus 262 ~~V~~hi~ngc 272 (279)
T KOG0837|consen 262 QKVMEHIHNGC 272 (279)
T ss_pred HHHHHHHhccc
Confidence 76655444333
No 302
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=37.77 E-value=3.9e+02 Score=32.41 Aligned_cols=113 Identities=25% Similarity=0.265 Sum_probs=68.8
Q ss_pred CCcccccccCcccCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH--HHHHHHHHHHHHHH
Q 004901 554 AKRSAFWGRSNARKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ--ALHERRLALEQDVS 631 (724)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~--~~~~~r~~Le~~V~ 631 (724)
+++++.|-| ++--+-+||--..+-|+.-.-.| .| .-|--|-.|-+ ...-.-.-|++|-.
T Consensus 654 ~~~~tawer----------------eE~~l~~rL~dSQtllr~~v~~e-qg--ekqElL~~~~~l~s~~~q~sllraE~~ 714 (961)
T KOG4673|consen 654 SKAATAWER----------------EERSLNERLSDSQTLLRINVLEE-QG--EKQELLSLNFSLPSSPIQLSLLRAEQG 714 (961)
T ss_pred hhhhhHHHH----------------HHHHHHHhhhhHHHHHHHHHHHH-hh--hHHHHHHHhcCCCcchhHHHHHHHHHH
Confidence 466777866 34456678877777666555444 11 11111111111 01111234788999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 632 RLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 632 ~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (724)
+|+++|.+|++--+-++.-+ -.+=+||..++..++.||+.+..++..+.|+.+.
T Consensus 715 ~l~~~le~e~nr~~~~~~e~-----------------~~~qeE~~~l~~r~~~le~e~r~~k~~~~q~lq~ 768 (961)
T KOG4673|consen 715 QLSKSLEKERNRAAENRQEY-----------------LAAQEEADTLEGRANQLEVEIRELKRKHKQELQE 768 (961)
T ss_pred HHHHHHHHHHHHHhhhHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999988766555432 2445678888888888888888887777766543
No 303
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=37.75 E-value=1.7e+02 Score=29.42 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=38.6
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004901 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQK 688 (724)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~ 688 (724)
+.++.|..-+.+++..|++.+++|+++|..=-+-=... .-|++. ..+-++++-|-.||.-|+++|+.
T Consensus 81 ~t~~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY-qll~hr-----------~e~ee~~~~l~~le~~~~~~e~~ 147 (175)
T PRK13182 81 NISSVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY-QLLQHR-----------REMEEMLERLQKLEARLKKLEPI 147 (175)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHhH-----------HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456777888888889998888888775422211111 112111 13455555666666666665543
No 304
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=37.52 E-value=3.3e+02 Score=31.41 Aligned_cols=85 Identities=16% Similarity=0.266 Sum_probs=45.9
Q ss_pred hhhhhhhhHHH----hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 004901 604 GNAILQASLER----RKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALA 678 (724)
Q Consensus 604 ~n~~~~~~~~~----~~~~~~~~r~~Le~~V~~L~~~L~~-e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~ 678 (724)
.|++.++.++. |.+....-+.-|++++.+++++|.+ |..++..... .|.+ +|.....+...|+.+
T Consensus 140 ~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~-----~~~~-----~~~~~~~~~~~l~~l 209 (498)
T TIGR03007 140 VQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQE-----NGGI-----LPDQEGDYYSEISEA 209 (498)
T ss_pred HHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----Cccc-----CccchhhHHHHHHHH
Confidence 46666666654 4455556677799999999999874 4444443321 1211 222333344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004901 679 EADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 679 E~~v~~le~~~~~l~~~l~~ 698 (724)
+..+..++.++..+..++..
T Consensus 210 ~~~l~~~~~~l~~~~a~~~~ 229 (498)
T TIGR03007 210 QEELEAARLELNEAIAQRDA 229 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555554444444444433
No 305
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=37.17 E-value=2.8e+02 Score=24.90 Aligned_cols=68 Identities=21% Similarity=0.277 Sum_probs=49.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ----------ALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (724)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~----------~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~ 649 (724)
.+|.++|.+..+++..+.+-++.=++++..+-|-.. +.....-+|..|+..|..++.+...+-.-|..
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 368899999999999998888888877765443322 23344566888888888888887777666554
No 306
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=37.06 E-value=3e+02 Score=25.23 Aligned_cols=39 Identities=26% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (724)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l 651 (724)
..+.+.++++-..|.+...+|+.++.+=..+...|+..-
T Consensus 5 ~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~ 43 (129)
T cd00890 5 AAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLK 43 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666777777777777777777777777777664
No 307
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.04 E-value=1.1e+02 Score=31.05 Aligned_cols=18 Identities=22% Similarity=0.460 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004901 621 ERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 621 ~~r~~Le~~V~~L~~~L~ 638 (724)
++..+|++++++|+++|+
T Consensus 110 ~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 110 EELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344456666666666665
No 308
>PRK11281 hypothetical protein; Provisional
Probab=36.99 E-value=4e+02 Score=34.50 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=36.2
Q ss_pred HHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 599 AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 599 ~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (724)
..|..+|..+|.-+..|..-+..+-..+|+.|..||.++.+
T Consensus 212 ~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~ 252 (1113)
T PRK11281 212 RKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINS 252 (1113)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999988888888888899999999998876
No 309
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=36.87 E-value=1e+02 Score=28.45 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004901 675 IALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 675 ia~~E~~v~~le~~~~~l~~~l 696 (724)
...+.++|-.||++|.+|..++
T Consensus 85 ~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 85 MDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3567778888888888887765
No 310
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=36.81 E-value=3.2e+02 Score=30.76 Aligned_cols=90 Identities=20% Similarity=0.231 Sum_probs=64.1
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC------------C-C-CCCChhHHHHHHHH
Q 004901 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS------------S-S-RGMDSKTRAELEEI 675 (724)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~------------~-~-~~~~~~~~~ll~ei 675 (724)
..|..|-...+-.|..|+....++......=...+..||.||..-.+++. + + -.-+.--.+|+.|+
T Consensus 46 ~~L~~Ri~di~~wk~eL~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~ 125 (384)
T PF03148_consen 46 KRLRQRIRDIRFWKNELERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEV 125 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHH
Confidence 34555666667777788877777777666666677788888865445443 1 1 34566778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 676 ALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 676 a~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
.+++.--..|++.+.....||..-
T Consensus 126 ~li~~~~~lL~~~l~~~~eQl~~l 149 (384)
T PF03148_consen 126 ELIENIKRLLQRTLEQAEEQLRLL 149 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888888888777776643
No 311
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=36.76 E-value=91 Score=27.76 Aligned_cols=34 Identities=26% Similarity=0.460 Sum_probs=28.8
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 610 ASLERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (724)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~ 643 (724)
+.-++|-..++..-.+|.+||.+|+.+|..|+.=
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777788888889999999999999988753
No 312
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=36.47 E-value=5.5e+02 Score=30.04 Aligned_cols=100 Identities=20% Similarity=0.198 Sum_probs=52.5
Q ss_pred HhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC-CCCCChhHHHHHHHHHHHH
Q 004901 601 EARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS-SRGMDSKTRAELEEIALAE 679 (724)
Q Consensus 601 ~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~-~~~~~~~~~~ll~eia~~E 679 (724)
+.+..-.+|-.++--+..++..+.+|.+==.+-++-||.-..+..-|..+... +.+.. +.. ...-+|=.|...+.
T Consensus 212 ~l~~~~e~~~~l~l~~~~~~~~~~el~~Yk~kA~~iLq~kEklI~~LK~~~~~--~~~~~~~~~--~el~~l~~E~~~~~ 287 (511)
T PF09787_consen 212 YLRESGELQEQLELLKAEGESEEAELQQYKQKAQRILQSKEKLIESLKEGCLE--EGFDSSTNS--IELEELKQERDHLQ 287 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc--cccccccch--hcchhhHHHHHHHH
Confidence 33444444444444444444445555544444555555555555656652211 11110 000 22234556778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhc
Q 004901 680 ADVARLKQKVAELHHQLNQQRQHHY 704 (724)
Q Consensus 680 ~~v~~le~~~~~l~~~l~~~~~~~~ 704 (724)
+++..|+.++..|+.++.+......
T Consensus 288 ee~~~l~~Qi~~l~~e~~d~e~~~~ 312 (511)
T PF09787_consen 288 EEIQLLERQIEQLRAELQDLEAQLE 312 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888777777765544433
No 313
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.06 E-value=2.8e+02 Score=36.91 Aligned_cols=76 Identities=13% Similarity=0.156 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (724)
-.+|++....|+..|+.++...++|..+-......+..+..+..-..+.=++|.-+++.+..+=+.-..++.++.|
T Consensus 515 ~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~q 590 (1486)
T PRK04863 515 LQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQ 590 (1486)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4458889999999999999999999987553322222222222223333333334444443333333444444443
No 314
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=35.98 E-value=6.1e+02 Score=32.96 Aligned_cols=63 Identities=27% Similarity=0.266 Sum_probs=31.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhh-------hhhHHHhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAIL-------QASLERRKQALHER---RLALEQDVSRLQEQLQAERDLRA 645 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~-------~~~~~~~~~~~~~~---r~~Le~~V~~L~~~L~~e~~~~~ 645 (724)
.|++||.....++.++..-.+....+ +..++.++..+..+ ..+|++.+..+.++..+....+.
T Consensus 296 ~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~ 368 (1163)
T COG1196 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666665444433333 34444444444443 44445555555554444444444
No 315
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=35.94 E-value=90 Score=27.68 Aligned_cols=55 Identities=24% Similarity=0.332 Sum_probs=41.5
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHH--------------HHHHHHHHHHHHHHHHHHH
Q 004901 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL--------------HERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~--------------~~~r~~Le~~V~~L~~~L~ 638 (724)
...||..-..||.++.+|..-+++|...+.+....+ =.--..||-||.+|++++.
T Consensus 10 r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 10 RSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVL 78 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888889999999999999999999988865533 2224457777777766653
No 316
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=35.87 E-value=3.9e+02 Score=32.37 Aligned_cols=120 Identities=22% Similarity=0.361 Sum_probs=70.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHH---------------------HHHHHHHHHHH------
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRL---------------------ALEQDVSRLQE------ 635 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~---------------------~Le~~V~~L~~------ 635 (724)
.|+.|..--.-|.-+|++|-|-=.+++..+.+-+..+..... .|..+|.+++.
T Consensus 609 ~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~eE~~~~~~keie~K~~~e~~L~~EveK~k~~a~EAv 688 (786)
T PF05483_consen 609 NIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHEEETDKYQKEIESKSISEEELLGEVEKAKLTADEAV 688 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444444555556666655544455544444333322222 24455666553
Q ss_pred HHHHHHHHHHHHH----Hhh-CCCCCCCC------CC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 636 QLQAERDLRAALE----VGL-SMSSGQFS------SS--RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 636 ~L~~e~~~~~~le----~~l-~~~~~~~~------~~--~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (724)
.+++|++||+-=. .|| ....+++- .+ ..--.+-++.++==+.||.++++|+-.+..|+.||-.+|.+
T Consensus 689 K~q~EtdlrCQhKIAeMVALMEKHK~qYDkiVEEkDaEL~~~k~KE~E~~s~k~sLE~ELs~lk~el~slK~QLk~e~~e 768 (786)
T PF05483_consen 689 KLQEETDLRCQHKIAEMVALMEKHKHQYDKIVEEKDAELGLYKKKEQEQSSHKASLELELSNLKNELSSLKKQLKTERTE 768 (786)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 5778888875322 233 33333321 00 11234556777777899999999999999999999999876
No 317
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=35.77 E-value=8.6e+02 Score=29.76 Aligned_cols=43 Identities=23% Similarity=0.188 Sum_probs=31.1
Q ss_pred CChhHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhcCC
Q 004901 664 MDSKTRAELEEIALAEAD--------------VARLKQKVAELHHQLNQQRQHHYGS 706 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~--------------v~~le~~~~~l~~~l~~~~~~~~~s 706 (724)
+.+..++|..+++.++.+ |..|+.++.+|+.++.+|......+
T Consensus 286 ~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~ 342 (754)
T TIGR01005 286 LEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKS 342 (754)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888888888864 5667788888888888776654433
No 318
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=35.76 E-value=3.3e+02 Score=36.73 Aligned_cols=113 Identities=19% Similarity=0.247 Sum_probs=76.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLA-----------LEQDVSRLQEQLQAERDLRAALEV 649 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~-----------Le~~V~~L~~~L~~e~~~~~~le~ 649 (724)
+..|.+|+...++|+..|.+....+-.|+...++-|+...+-+.. |.-++.+|++.|..=.++-.=|+.
T Consensus 1256 ~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~ 1335 (1822)
T KOG4674|consen 1256 NFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKK 1335 (1822)
T ss_pred HhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677788888888888999999999999888877765444433 667999999999876666666666
Q ss_pred hhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 650 GLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 650 ~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
-+++-. ..+-.+..++-.+++.+...|..|+..-..|-..+...
T Consensus 1336 ~~~~~q------~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~ 1379 (1822)
T KOG4674|consen 1336 ELNRLQ------EKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEK 1379 (1822)
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665432 22334445555666666666666655555554444433
No 319
>PF13514 AAA_27: AAA domain
Probab=35.75 E-value=7.1e+02 Score=32.13 Aligned_cols=131 Identities=21% Similarity=0.221 Sum_probs=79.2
Q ss_pred cccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHH------------HhHHHHHHHHHH---HHHHHHHHHH
Q 004901 571 VESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLE------------RRKQALHERRLA---LEQDVSRLQE 635 (724)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~------------~~~~~~~~~r~~---Le~~V~~L~~ 635 (724)
.+.++++.+....+++++.....++.+|..-...-+.|++.++ .+-.+|++.+.. .++|+.+++.
T Consensus 231 ~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~ll~~~~~I~~L~~~~~~~~~~~~dl~~~~~ 310 (1111)
T PF13514_consen 231 GEVPDFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELDALPVDEELLAHAAEIEALEEQRGEYRKARQDLPRLEA 310 (1111)
T ss_pred CCcCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888777777777777777776443333333333222 222345555443 4556666666
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCC------CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 636 QLQAERDLRAALEVGLSMSSGQF------SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 636 ~L~~e~~~~~~le~~l~~~~~~~------~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (724)
++..-..--..|..-|+ +.... .+|......+++|+.+-..++..+..++.++.+...++.+-+.+
T Consensus 311 e~~~~~~~~~~~~~~lg-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 382 (1111)
T PF13514_consen 311 ELAELEAELRALLAQLG-PDWDEEDLEALDPSLAARERIRELLQEREQLEQALAQARRELEEAERELEQLQAE 382 (1111)
T ss_pred HHHHHHHHHHHHHHhcC-CCcccchhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554433334444466 22111 13334445778888888899999888888888888887755554
No 320
>PF07321 YscO: Type III secretion protein YscO; InterPro: IPR009929 This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis [].
Probab=35.41 E-value=4.4e+02 Score=25.87 Aligned_cols=96 Identities=25% Similarity=0.261 Sum_probs=64.9
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSR 662 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~ 662 (724)
.|.++...+.+.+-+-.+-.= ....+.++...+++..||.-..++..+|=..++.-.-...-|+.
T Consensus 7 ~IK~~R~drAe~a~~~q~~~l--~~a~~~~~~a~~~l~dyr~wr~~ee~rly~~~~~~~v~~kele~------------- 71 (152)
T PF07321_consen 7 RIKHLREDRAERALRRQERRL--QEARAALQQAEQELADYRQWRQREEERLYAEIQGKVVSLKELEK------------- 71 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHHHH-------------
Confidence 344454444444433332211 12234556667788999999999988888888877777766665
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
...+|+.|-+-+..||+.+.+...++.+++.
T Consensus 72 --------~~~qv~~Lr~~e~~le~~~~~a~~~~~~e~~ 102 (152)
T PF07321_consen 72 --------WQQQVASLREREAELEQQLAEAEEQLEQERQ 102 (152)
T ss_pred --------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888888888888888888877765
No 321
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=35.38 E-value=2.4e+02 Score=32.15 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (724)
+.+|++++..+-+++..||+++..+..++.+....
T Consensus 71 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 105 (418)
T TIGR00414 71 IEEIKKELKELKEELTELSAALKALEAELQDKLLS 105 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888889999999999999999888888876554
No 322
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=35.27 E-value=4.9e+02 Score=26.34 Aligned_cols=67 Identities=27% Similarity=0.286 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 615 RKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 615 ~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
.+..+...-..|+.+...|+.++.+=+.-...++.... ...-.+......+|.+|++.-..|..
T Consensus 121 ~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~----------------e~~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 121 GKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE----------------ELRQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777888888888887777666666665443 33445567778888888888877777
Q ss_pred HHH
Q 004901 695 QLN 697 (724)
Q Consensus 695 ~l~ 697 (724)
+|-
T Consensus 185 ~l~ 187 (189)
T PF10211_consen 185 QLE 187 (189)
T ss_pred HHh
Confidence 764
No 323
>PF08687 ASD2: Apx/Shroom domain ASD2; InterPro: IPR014799 Cell shape changes require the coordination of actin and microtubule cytoskeletons. The Shroom family is a small group of related proteins that are defined by sequence similarity and in most cases by some link to the actin cytoskeleton. The Shroom (Shrm) protein family is found only in animals. Proteins of this family are predicted to be utilised in multiple morphogenic and developmental processes across animal phyla to regulate cells shape or intracellular architecture in an actin and myosin-dependent manner []. While the founding member of the Shrm family is Shrm1 (formerly Apx), it appears that this protein is found only in Xenopus []. In mice and humans, the Shrm family of proteins consists of: Shrm2 (formerly Apxl), a protein involved in the morphogenesis, maintenance, and/or function of vascular endothelial cells. Shrm3 (formerly Shroom), a protein necessary for neural tube closure in vertebrate development as deficiency in Shrm results in spina bifida. Shrm3 is also conserved in some invertebrates, as orthologues can be found in sea urchins. Shrm4, a regulator of cyto-skeletal architecture that may play an important role in vertebrate development. It is implicated in X-linked mental retardation in humans. This protein family is based on the conservation of a specific arrangement of an N-terminal PDZ domain, a centrally positioned sequence motif termed ASD1 (Apx/Shrm Domain 1) and a C-terminal motif termed ASD2 [, , ]. Shrm2 and Shrm3 contain all three domains, while Shrm4 contains the PDZ and ASD2 domains, but lacks a discernible ASD1 element. To date, the ASD1 and ASD2 elements have only been found in Shrm-related proteins and do not appear in combination with other conserved domains. ASD1 is required for targeting actin, while ASD2 is capable of eliciting an actomyosin based constriction event [, ]. ASD2 is the most highly conserved sequence element shared by Shrm1, Shrm2, Shrm3, and Shrm4. It possesses a well conserved series of leucine residues that exhibit spacing consistent with that of a leucine zipper motif []. Shroom2 is both necessary and sufficient to govern the localization of pigment granules at the apical surface of epithelial cells. Shroom2 is a central regulator of RPE pigmentation. Despite their diverse biological roles, Shroom family proteins share a common activity. Since the locus encoding human SHROOM2 lies within the critical region for two distinct forms of ocular albinism, it is possible that SHROOM2 mutations may contribute to human visual system disorders [].; GO: 0000902 cell morphogenesis, 0005737 cytoplasm; PDB: 3THF_B.
Probab=35.13 E-value=4.3e+02 Score=28.42 Aligned_cols=97 Identities=25% Similarity=0.208 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhHHHH---------------------------------------------HHHHHHHHH
Q 004901 594 LRHRIAKEARGNAILQASLERRKQAL---------------------------------------------HERRLALEQ 628 (724)
Q Consensus 594 ~~~~~~~~~~~n~~~~~~~~~~~~~~---------------------------------------------~~~r~~Le~ 628 (724)
.|..|..|++.|+.|.+.|+..=++. ++-|..|++
T Consensus 108 eqe~l~ee~~~n~~lG~~ve~~v~~~c~p~E~~Ky~~fi~Dl~kv~~LLLsLs~RLaRve~aL~~~~~~~~~~Er~~L~~ 187 (264)
T PF08687_consen 108 EQEALQEEIQANEALGAEVEALVQEVCKPNEFEKYRMFIGDLEKVVNLLLSLSGRLARVENALSSLDEDADPEERESLLE 187 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHH
Confidence 35678999999999999887654422 345778888
Q ss_pred HHHHHHHHHHH-----------HHHHHHHHHHhhCCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 629 DVSRLQEQLQA-----------ERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 629 ~V~~L~~~L~~-----------e~~~~~~le~~l~~~~~~~~-~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
--..|+.|+.. |+.++.+|.+.|+.- ++. .-.++-.| -+||.|---||+-|--.|+|+..|+
T Consensus 188 k~~~L~~Q~edAk~LKe~~drRe~~v~~iL~~~L~~e--q~~dy~~fv~mK-a~Ll~eqreLddkiklgeEQL~~L~ 261 (264)
T PF08687_consen 188 KRRLLQRQLEDAKELKENLDRRERVVSEILARYLSEE--QLADYRHFVKMK-AALLIEQRELDDKIKLGEEQLEALR 261 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-HH--HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHH--HHHHHHHHHHHH-HHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 88899998875 445555555555310 110 11222222 2588888888888888888887764
No 324
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.08 E-value=2.1e+02 Score=32.41 Aligned_cols=86 Identities=26% Similarity=0.329 Sum_probs=49.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhCCCCCCCCCCCCCChhHHH----HHHHHHHHHHHHHH
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQLQA---ERDLRAALEVGLSMSSGQFSSSRGMDSKTRA----ELEEIALAEADVAR 684 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~---e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~----ll~eia~~E~~v~~ 684 (724)
|+.-+.++.+++-.+|.||+.|.+.|.. +.+|-.-.+.|-. .-.|.++ .+.||+-|-...++
T Consensus 105 leqertq~qq~~e~~erEv~~l~~llsr~~~~~~Lenem~ka~E-----------d~eKlrelv~pmekeI~elk~kl~~ 173 (542)
T KOG0993|consen 105 LEQERTQLQQNEEKLEREVKALMELLSRGQYQLDLENEMDKAKE-----------DEEKLRELVTPMEKEINELKKKLAK 173 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh-----------hHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 4555667777888888888888777654 3333333333222 1122222 34677777777777
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCccccc
Q 004901 685 LKQKVAELHHQLNQQRQHHYGSLSDACD 712 (724)
Q Consensus 685 le~~~~~l~~~l~~~~~~~~~s~~~~~~ 712 (724)
-|+++.+|...+++- .-|+|..|.
T Consensus 174 aE~~i~El~k~~~h~----a~slh~~t~ 197 (542)
T KOG0993|consen 174 AEQRIDELSKAKHHK----AESLHVFTD 197 (542)
T ss_pred HHHHHHHHHhhhccc----chHHHHHHH
Confidence 888888887555442 235555443
No 325
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.91 E-value=3.2e+02 Score=31.02 Aligned_cols=53 Identities=36% Similarity=0.490 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (724)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (724)
|-.++.-||+||++|+-.+.-||--|. -.+++-...++-++.|+-++.-+|+|
T Consensus 439 l~~ei~~L~eqle~e~~~~~~le~ql~-----------------~~ve~c~~~~aS~~slk~e~erl~qq 491 (542)
T KOG0993|consen 439 LVKEIQSLQEQLEKERQSEQELEWQLD-----------------DDVEQCSNCDASFASLKVEPERLHQQ 491 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 566788899999999999999987553 33445555555555555555555533
No 326
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=34.78 E-value=2.6e+02 Score=27.56 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=48.9
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQAS---LERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (724)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~---~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~ 643 (724)
.++|+...-||.-..++..++.-=|+-=-.++|- ++...++|.+++.+++.-+.+|+.-|......
T Consensus 22 ~d~e~~~dtLe~i~~~~~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 22 LDEEAIADTLESIEDEIEEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777889998888888874444433334444 45556688999999999999999998876554
No 327
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=34.70 E-value=1.2e+02 Score=25.16 Aligned_cols=33 Identities=33% Similarity=0.413 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVG 650 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~ 650 (724)
.|.+|...|+.|++|++..+.+=...|.|=+.-
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~AAeal 57 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRAAAEAL 57 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788889999999999988888777765543
No 328
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=34.67 E-value=1.7e+02 Score=30.73 Aligned_cols=94 Identities=16% Similarity=0.156 Sum_probs=47.5
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC--CC
Q 004901 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS--SS 661 (724)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~--~~ 661 (724)
|.++...+.+|..+|..--+.-+.|+. ..+.+..+-..+++++++|++|+..-...+.-|.--|......|. +-
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~----~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~ 119 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEV----YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVE 119 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444433333333333 233444455567788888888888777777666655544433332 22
Q ss_pred CCCChhHHHHHHHHHHHHHH
Q 004901 662 RGMDSKTRAELEEIALAEAD 681 (724)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~ 681 (724)
..+|-...+=.+-|+-|.+.
T Consensus 120 ~d~Pf~~~eR~~Rl~~L~~~ 139 (251)
T PF11932_consen 120 LDLPFLLEERQERLARLRAM 139 (251)
T ss_pred cCCCCChHHHHHHHHHHHHh
Confidence 33444444444444444443
No 329
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.58 E-value=6.5e+02 Score=33.14 Aligned_cols=39 Identities=15% Similarity=0.291 Sum_probs=24.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
..|.+..++-.++..++.++..|+.++..+..++...+.
T Consensus 967 ~~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~k 1005 (1311)
T TIGR00606 967 GKDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQ 1005 (1311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666666666666666666666665554443
No 330
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.55 E-value=5.2e+02 Score=34.04 Aligned_cols=120 Identities=12% Similarity=0.200 Sum_probs=63.4
Q ss_pred CcccCCCCchHHHHHHHhhhhhHHHHHHHHH---Hhhhh------hhhhhhHHHhHHHH----------HHHHHHHHHHH
Q 004901 570 SVESIDSSGEEELAIQRLEITKNDLRHRIAK---EARGN------AILQASLERRKQAL----------HERRLALEQDV 630 (724)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~n------~~~~~~~~~~~~~~----------~~~r~~Le~~V 630 (724)
..++++....+...|.|+...-.+|+.+|.. ++.+. .-||..+..-+..+ .+.+..++.++
T Consensus 780 ~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI 859 (1311)
T TIGR00606 780 EEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQI 859 (1311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666677777777777777642 22211 22444433333222 44455677777
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 631 SRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 631 ~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (724)
.+||.++.+-.+.+..|..++... ..+=+...++-++|..+.++|..+++++..|+..+
T Consensus 860 ~~Lq~ki~el~~~klkl~~~l~~r-------~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~ 918 (1311)
T TIGR00606 860 QHLKSKTNELKSEKLQIGTNLQRR-------QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFL 918 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 777766666666666666655421 12333445555555555555555555555554433
No 331
>PRK14127 cell division protein GpsB; Provisional
Probab=34.53 E-value=65 Score=29.87 Aligned_cols=32 Identities=34% Similarity=0.345 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (724)
.++..|++.|++++.+|++++.+++.++..-+
T Consensus 40 e~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~~ 71 (109)
T PRK14127 40 EAFQKEIEELQQENARLKAQVDELTKQVSVGA 71 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 45556666888888888888888888777543
No 332
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=34.48 E-value=5.4e+02 Score=26.60 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=29.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
|-.+-++++.-...+|.++..||++|..|+.+..++
T Consensus 180 Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 180 LEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678899999999999999999999998876543
No 333
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=34.47 E-value=7.4e+02 Score=28.20 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
+..+.+|+.-+-+.||+|+--..-||.-|+ .-++--..||.-|=.+++..|++|.-+.+.-.+.-+
T Consensus 239 k~~~~~e~~~~~~~LqEEr~R~erLEeqlN-------------d~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~ 304 (395)
T PF10267_consen 239 KEQYQREYQFILEALQEERYRYERLEEQLN-------------DLTELHQNEIYNLKQELASMEEKMAYQSYERARDIW 304 (395)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHH
Confidence 344666777777777777777777776554 234445566666666666666666655554444333
No 334
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=34.41 E-value=6.7e+02 Score=28.60 Aligned_cols=109 Identities=26% Similarity=0.312 Sum_probs=71.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhCCCCCCCC
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQ-LQAERDLRAALEVGLSMSSGQFS 659 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~-L~~e~~~~~~le~~l~~~~~~~~ 659 (724)
++.-+=|+.+.++|+.+-. ..| ..+.+|-....+-|..|+-.+++--+. -+.|-++ .+||.|+....|+|.
T Consensus 252 ~~l~~~l~~tan~lr~Q~~---~ve----~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I-~~le~airdK~~pLK 323 (421)
T KOG2685|consen 252 EALDQTLRETANDLRTQAD---AVE----LAFKKRIRETQDARNKLEWQLAKTLEEIADAENNI-EALERAIRDKEGPLK 323 (421)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHhcccccHH
Confidence 3444556667777776543 233 345666777788888888776654333 3444444 468888877767664
Q ss_pred C-----------C---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 660 S-----------S---RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 660 ~-----------~---~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
+ | -+-+.--..|+.||-.|...|..|++++.+-+.-|.
T Consensus 324 VAqTRle~Rt~RPnvELCrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~ 375 (421)
T KOG2685|consen 324 VAQTRLENRTYRPNVELCRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLK 375 (421)
T ss_pred HHHHHHHHcccCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1 234555678999999999999999999887665443
No 335
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=33.85 E-value=5.9e+02 Score=31.61 Aligned_cols=61 Identities=30% Similarity=0.274 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (724)
+.+|+.+-+.||.+|+....-=--+|+|+. |+||.++|+++..+-.+--+|+..--++|..
T Consensus 672 ~eel~Ke~kElq~rL~~q~KkiDh~ERA~R-------------------~EeiPL~e~~~~~~~~~d~e~~e~~Ek~Ri~ 732 (988)
T KOG2072|consen 672 IEELEKERKELQSRLQYQEKKIDHLERAKR-------------------LEEIPLIEKAYDERQEEDRELYEAREKQRIE 732 (988)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHH-------------------HHhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344555556666666555444444555554 5677777777766666666666655555544
No 336
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=33.67 E-value=5.7e+02 Score=26.72 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=33.3
Q ss_pred hhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 603 RGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRA 645 (724)
Q Consensus 603 ~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~ 645 (724)
|-...||+...+|....+.-+..+++.+..++..++....-+.
T Consensus 45 ~Le~~l~~E~k~R~E~~~~lq~~~e~~i~~~~~~v~~~~~~~~ 87 (247)
T PF06705_consen 45 KLEKALEAEVKRRVESNKKLQSKFEEQINNMQERVENQISEKQ 87 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566778888888888888888888888888888887766543
No 337
>PRK11239 hypothetical protein; Provisional
Probab=33.46 E-value=65 Score=33.29 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (724)
-+|-++|+.||++|+.|+.++..|..||
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555555555555555555555443
No 338
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=33.30 E-value=3.4e+02 Score=25.67 Aligned_cols=67 Identities=19% Similarity=0.303 Sum_probs=44.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEV 649 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~ 649 (724)
.|+.|...-.+++..|+.=-..-...++.|+.-+....++|..|+.++..++.++..=..=..+|-.
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~ 126 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHD 126 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445566666544444455666677777777888888999999998888766555555543
No 339
>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function.
Probab=33.16 E-value=3.1e+02 Score=25.57 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=30.7
Q ss_pred CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 87 Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
..+.|.+... .+..-|.|++..+.+.|++.|+..+..+
T Consensus 69 ~~~yfgL~T~---~G~vEfec~~~~~~k~W~~gI~~mL~~~ 106 (110)
T PF08458_consen 69 ERRYFGLKTA---QGVVEFECDSQREYKRWVQGIQHMLSQV 106 (110)
T ss_pred eEEEEEEEec---CcEEEEEeCChhhHHHHHHHHHHHHHHh
Confidence 4456766542 6789999999999999999999998754
No 340
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=33.15 E-value=5.5e+02 Score=32.56 Aligned_cols=31 Identities=19% Similarity=0.292 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 667 KTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
++..|-.||..+++.|...|..+..+..+|.
T Consensus 844 ~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~ 874 (1174)
T KOG0933|consen 844 QISSLKSELGNLEAKVDKVEKDVKKAQAELK 874 (1174)
T ss_pred HHHHHHHHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 3344555555555555555555554444444
No 341
>PF14282 FlxA: FlxA-like protein
Probab=32.87 E-value=2.8e+02 Score=25.38 Aligned_cols=62 Identities=31% Similarity=0.538 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004901 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (724)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~ 704 (724)
.|++.+..|+++|++ |.-...+|++++. .-+.+|...|.-|+.++..|+.+..++.....
T Consensus 23 ~L~~Qi~~Lq~ql~~------------------l~~~~~~~~e~k~--~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~~ 82 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQE------------------LSQDSDLDAEQKQ--QQIQLLQAQIQQLQAQIAQLQSQQAEQQQQKQ 82 (106)
T ss_pred HHHHHHHHHHHHHHH------------------HHcccCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred CC
Q 004901 705 GS 706 (724)
Q Consensus 705 ~s 706 (724)
.+
T Consensus 83 ~~ 84 (106)
T PF14282_consen 83 SS 84 (106)
T ss_pred cc
No 342
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=32.64 E-value=2e+02 Score=34.93 Aligned_cols=39 Identities=26% Similarity=0.244 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHhhhcCCCccccccccccc
Q 004901 680 ADVARLKQKVAELHHQLNQ-QRQHHYGSLSDACDRYQNVQ 718 (724)
Q Consensus 680 ~~v~~le~~~~~l~~~l~~-~~~~~~~s~~~~~~~~~~~~ 718 (724)
.....|++.+..+...+++ ..-.++||.+++..+.|+.+
T Consensus 607 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 646 (657)
T PTZ00186 607 AATDKLQKAVMECGRTEYQQAAAANSGSSSNSGEQQQQQQ 646 (657)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHH
Confidence 3344455555555555543 45667888888777655543
No 343
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=31.97 E-value=3.6e+02 Score=24.34 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 623 RLALEQDVSRLQEQLQAERDLRAALEVGL-----SMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~le~~l-----~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
...|-+....|..++.+=......|+..= -+.-|..-+....+.=...|=..+..++.+|.+|+.++..+..++.
T Consensus 15 ~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~ 94 (105)
T cd00632 15 LQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLK 94 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555554444444444321 1112222233333333344445567777777777777777777766
Q ss_pred HHH
Q 004901 698 QQR 700 (724)
Q Consensus 698 ~~~ 700 (724)
..+
T Consensus 95 elk 97 (105)
T cd00632 95 ELQ 97 (105)
T ss_pred HHH
Confidence 544
No 344
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=31.93 E-value=3e+02 Score=26.15 Aligned_cols=80 Identities=19% Similarity=0.301 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--CC-CCCCCCCC-----CC-------CChhHHHHHHHHHHHHH
Q 004901 617 QALHERRLALEQDVSRLQEQLQAERDLRAALE-VGL--SM-SSGQFSSS-----RG-------MDSKTRAELEEIALAEA 680 (724)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le-~~l--~~-~~~~~~~~-----~~-------~~~~~~~ll~eia~~E~ 680 (724)
..++.|..+|++||+..+.+++. |..|.. .-| .- ..-++.+. .. |-.....+..+|+.||.
T Consensus 26 srl~~R~~~lk~dik~~k~~~en---ledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les 102 (131)
T KOG1760|consen 26 SRLNSRKDDLKADIKEAKTEIEN---LEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELES 102 (131)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH---HHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999875 333332 222 11 11222211 11 22233445566777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004901 681 DVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 681 ~v~~le~~~~~l~~~l~~~ 699 (724)
++-..+..+.+|+..||+-
T Consensus 103 ~~e~I~~~m~~LK~~LYaK 121 (131)
T KOG1760|consen 103 ELESISARMDELKKVLYAK 121 (131)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777888887753
No 345
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.84 E-value=7.6e+02 Score=30.55 Aligned_cols=20 Identities=25% Similarity=0.439 Sum_probs=11.5
Q ss_pred HHHHhhhhhhhhhhHHHhHH
Q 004901 598 IAKEARGNAILQASLERRKQ 617 (724)
Q Consensus 598 ~~~~~~~n~~~~~~~~~~~~ 617 (724)
--+|-|.---|+..|+|++.
T Consensus 363 qEqErk~qlElekqLerQRe 382 (1118)
T KOG1029|consen 363 QEQERKAQLELEKQLERQRE 382 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666554
No 346
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=31.64 E-value=3.7e+02 Score=33.77 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=31.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhcCCCccccc
Q 004901 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ--------HHYGSLSDACD 712 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~--------~~~~s~~~~~~ 712 (724)
+.....++..+++-++.++..++..+..+..++.+.+. ...|-.|..|.
T Consensus 408 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~CPvCg 464 (908)
T COG0419 408 IQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCG 464 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 34444555556677777777777777777777777543 11356677777
No 347
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=31.61 E-value=1.8e+02 Score=29.69 Aligned_cols=27 Identities=15% Similarity=0.395 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 674 EIALAEADVARLKQKVAELHHQLNQQR 700 (724)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (724)
.+..+.+||..+|+||.-|..-|..-.
T Consensus 161 ~l~~v~~Dl~~ie~QV~~Le~~L~~k~ 187 (195)
T PF12761_consen 161 NLKSVREDLDTIEEQVDGLESHLSSKK 187 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999999886443
No 348
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.50 E-value=3.5e+02 Score=23.82 Aligned_cols=88 Identities=20% Similarity=0.190 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC-CCCCC----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 617 QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS-SRGMD----SKTRAELEEIALAEADVARLKQKVAE 691 (724)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~-~~~~~----~~~~~ll~eia~~E~~v~~le~~~~~ 691 (724)
..++.+...+.+....|..++++=......|+..=.-...-..+ +.++. .-...|=+.++.++.+|..|+.+...
T Consensus 8 ~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~ 87 (106)
T PF01920_consen 8 QELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKY 87 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777764333333344321110000112 23333 33344445667788888888888888
Q ss_pred HHHHHHHHHhhhc
Q 004901 692 LHHQLNQQRQHHY 704 (724)
Q Consensus 692 l~~~l~~~~~~~~ 704 (724)
+..++........
T Consensus 88 l~~~l~~~~~~l~ 100 (106)
T PF01920_consen 88 LEKKLKELKKKLY 100 (106)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8777776555433
No 349
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=31.29 E-value=6.3e+02 Score=26.41 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 004901 615 RKQALHERRLALEQDVSRLQEQ 636 (724)
Q Consensus 615 ~~~~~~~~r~~Le~~V~~L~~~ 636 (724)
+++.++.+.-.++.++++|+.+
T Consensus 53 ~~k~~e~~~~~~~~~~~k~e~~ 74 (225)
T COG1842 53 RQKQLERKLEEAQARAEKLEEK 74 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555543
No 350
>PRK11020 hypothetical protein; Provisional
Probab=31.17 E-value=1.8e+02 Score=27.10 Aligned_cols=62 Identities=27% Similarity=0.339 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
.|.+|+.+|..+|.. +|.=|..|..+. =+..+.++..||+.|+.+|.+|+.+-. +.|+.|++
T Consensus 2 ~~K~Eiq~L~drLD~---~~~Klaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~~~~---~~lske~~ 63 (118)
T PRK11020 2 VEKNEIKRLSDRLDA---IRHKLAAASLRG---------DAEKYAQFEKEKATLEAEIARLKEVQS---QKLSKEAQ 63 (118)
T ss_pred cHHHHHHHHHHHHHH---HHHHHHHHHhcC---------CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 367888999999875 445555554422 234556666667666666666654432 34555554
No 351
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=30.82 E-value=2.6e+02 Score=32.43 Aligned_cols=62 Identities=23% Similarity=0.307 Sum_probs=29.3
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ-----------ALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~-----------~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le 648 (724)
+|-++-..+.+| ++=.+.|..|++.-++-++ ++...|.+|+++..+|+.++++=+.+-.-|.
T Consensus 64 lva~~k~~r~~~----~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 64 LVAEVKELRKRL----AKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444 4444455555544443322 3334455555555555555554444433343
No 352
>PF13514 AAA_27: AAA domain
Probab=30.73 E-value=6.8e+02 Score=32.32 Aligned_cols=39 Identities=26% Similarity=0.356 Sum_probs=28.9
Q ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 659 SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 659 ~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
.+|.........+..+++.++..+..++.++..|..++.
T Consensus 235 ~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~ 273 (1111)
T PF13514_consen 235 DFPEDGAERLEQLEEELAEAQAQLERLQEELAQLEEELD 273 (1111)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666667777788888888888888888887776654
No 353
>TIGR03755 conj_TIGR03755 integrating conjugative element protein, PFL_4711 family. Members of this protein family are found in genomic regions associated with conjugative transfer and integrated TOL-like plasmids. The specific function is unknown.
Probab=30.69 E-value=92 Score=35.40 Aligned_cols=65 Identities=23% Similarity=0.261 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCC---CCCC--CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 629 DVSRLQEQLQAERDLRAALEVGLSMSSGQ---FSSS--RGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 629 ~V~~L~~~L~~e~~~~~~le~~l~~~~~~---~~~~--~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
|..-|-.+|-.|..|..+||.||-+..-- ...| ...+.-..++=..|+.|.-||.+|+-++ +||.
T Consensus 308 dq~~l~~RLA~EiA~a~~~ekALl~RR~L~tG~~ePnva~~~~A~~~~~~~i~~LDrEI~~Lk~E~-~lRk 377 (418)
T TIGR03755 308 DQSLLVQRLASEIALADTLEKALLMRRMLLTGLQEPNVAANKPAQQEVDKAIDKLDREINNLKTEL-ELRK 377 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 66678899999999999999998544322 2344 3345555666667777777777777665 3444
No 354
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=30.65 E-value=1.1e+02 Score=31.60 Aligned_cols=34 Identities=29% Similarity=0.325 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHhhCCCCCCC
Q 004901 625 ALEQDVSRLQEQLQ--AERDLRAALEVGLSMSSGQF 658 (724)
Q Consensus 625 ~Le~~V~~L~~~L~--~e~~~~~~le~~l~~~~~~~ 658 (724)
.|-|.|.+||.||. +||++|++.-+-.......+
T Consensus 74 DLVQLV~ELQgQLd~lEeRsiRR~~NS~~~~~~d~l 109 (216)
T PF07957_consen 74 DLVQLVGELQGQLDNLEERSIRRTVNSTKTDDDDLL 109 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccc
Confidence 48899999999996 79999999988776654433
No 355
>PRK12787 fliX flagellar assembly regulator FliX; Reviewed
Probab=30.53 E-value=2.3e+02 Score=27.37 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=21.8
Q ss_pred CCCChhHHHHHHHHHH-HHHHHHHHHH
Q 004901 662 RGMDSKTRAELEEIAL-AEADVARLKQ 687 (724)
Q Consensus 662 ~~~~~~~~~ll~eia~-~E~~v~~le~ 687 (724)
..-++...++|.||.+ +|.|++||++
T Consensus 111 ~s~DP~L~~vL~EIElRa~VELAKl~~ 137 (138)
T PRK12787 111 ASGDPGLDAVLDEIELRVEVELAKLGQ 137 (138)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHhcc
Confidence 4568888999999987 7889999875
No 356
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=30.14 E-value=5.3e+02 Score=32.93 Aligned_cols=58 Identities=19% Similarity=0.291 Sum_probs=28.3
Q ss_pred HHHHHhhhhhHHHHHHHH------HHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 582 LAIQRLEITKNDLRHRIA------KEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERD 642 (724)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~------~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (724)
..|+.||.--.+||..|- .++| .-+..++++-+.+..++.+++.....+...+.+.++
T Consensus 661 ~~ie~le~e~~~l~~~~~~l~~~~~~~e---~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n 724 (1074)
T KOG0250|consen 661 DEIEDLEREASRLQKEILELENQRREAE---KNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKN 724 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666666442 1122 123444444445555555555555544444444333
No 357
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=30.13 E-value=2.7e+02 Score=35.95 Aligned_cols=23 Identities=26% Similarity=0.125 Sum_probs=12.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 004901 665 DSKTRAELEEIALAEADVARLKQ 687 (724)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~ 687 (724)
+.....|-+|.+.++..+..||+
T Consensus 172 ~a~~~~lqae~~~l~~~~~~l~~ 194 (1109)
T PRK10929 172 QAQLTALQAESAALKALVDELEL 194 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556666666666555443
No 358
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=29.77 E-value=6.3e+02 Score=31.35 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=28.4
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (724)
+-|..|++||..+.+++.+..+= +.+...+++.++.+.+.+.+|+++-.++.+++++
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~~----~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ 568 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEHL----EKLLKEQEKLKKELEQEMEELKERERNKKLELEK 568 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766654311 1223333444444444444444444444444433
No 359
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=29.67 E-value=6.1e+02 Score=25.77 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (724)
.+.-.||+-++.++..+++.+.+...+-
T Consensus 155 e~~~~ei~~lks~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 155 EAKDKEISRLKSEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344888889888888888888877654
No 360
>PF04714 BCL_N: BCL7, N-terminal conserver region; InterPro: IPR006804 The members of this group of sequences contain a conserved N-terminal domain which is found in the BCL7 family. The function of BCL7 proteins is unknown, though they may be involved in early development. Notably, BCL7B is commonly hemizygously deleted in patients with Williams syndrome [].
Probab=29.60 E-value=30 Score=27.51 Aligned_cols=22 Identities=32% Similarity=0.684 Sum_probs=19.4
Q ss_pred CCCcEEEEEEEeCCeEEEEcCC
Q 004901 34 WKSWKKRWFILTRTSLVFFKND 55 (724)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd~ 55 (724)
...|.|.|..+.+.+|.+||--
T Consensus 27 Vr~wEKKWVtv~dtslriyKWV 48 (52)
T PF04714_consen 27 VRKWEKKWVTVGDTSLRIYKWV 48 (52)
T ss_pred HHHHhhceEEeccceEEEEEEE
Confidence 5679999999999999999853
No 361
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=29.35 E-value=1.4e+02 Score=35.98 Aligned_cols=41 Identities=27% Similarity=0.499 Sum_probs=27.5
Q ss_pred HHHhhhhhhhhhhHHHh-----HHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 599 AKEARGNAILQASLERR-----KQALHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 599 ~~~~~~n~~~~~~~~~~-----~~~~~~~r~~Le~~V~~L~~~L~~ 639 (724)
-+-+|||-.+-...... +...-.+|.+|+++|++|+..+++
T Consensus 52 V~~iRgNl~~~~~~~~~~~~~~~e~~~~~r~~L~~everLraei~~ 97 (632)
T PF14817_consen 52 VRKIRGNLLWYGHQQSKERKKSRENEARRRRELEKEVERLRAEIQE 97 (632)
T ss_pred HHHHHcceeeccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578887765554433 233344788999999999877654
No 362
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=29.29 E-value=5.3e+02 Score=31.62 Aligned_cols=77 Identities=18% Similarity=0.286 Sum_probs=43.3
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Q 004901 608 LQASLERRKQALHERRLALEQDVSRLQEQLQA-ERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLK 686 (724)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~-e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le 686 (724)
++.+++.|..+...-..-|++.+.+|+++|.. |..|..--.. .+.+ .+...++.+|.+|+-++..+..|+
T Consensus 254 i~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~-----~~~~----d~~~ea~~~l~~~~~l~~ql~~l~ 324 (726)
T PRK09841 254 LQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ-----RDSV----DLNLEAKAVLEQIVNVDNQLNELT 324 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCC----CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555566677777777777754 3333222221 1222 134667778888777777776666
Q ss_pred HHHHHHH
Q 004901 687 QKVAELH 693 (724)
Q Consensus 687 ~~~~~l~ 693 (724)
.+..+|.
T Consensus 325 ~~~~~l~ 331 (726)
T PRK09841 325 FREAEIS 331 (726)
T ss_pred HHHHHHH
Confidence 6555543
No 363
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.19 E-value=1.2e+02 Score=26.53 Aligned_cols=40 Identities=33% Similarity=0.443 Sum_probs=28.9
Q ss_pred HHHHhhhhhHHHHHHH---HHHhhhhh----hhhhhHHHhHHHHHHH
Q 004901 583 AIQRLEITKNDLRHRI---AKEARGNA----ILQASLERRKQALHER 622 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~---~~~~~~n~----~~~~~~~~~~~~~~~~ 622 (724)
-|+|||.-|.++...| -.|+||+. ++-.-+.-||+..++|
T Consensus 22 rIERlEeEk~~i~~dikdvy~eakg~GFDvKa~r~iirlrK~D~~er 68 (85)
T COG3750 22 RIERLEEEKKTIADDIKDVYAEAKGHGFDVKAVRTIIRLRKLDKAER 68 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHhhhHHHH
Confidence 4899999999999887 56899985 4555555566555443
No 364
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=28.94 E-value=88 Score=31.20 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 670 AELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
..|.|-..|.++|-+|+.++.||+.+|.
T Consensus 21 ~ELdEKE~L~~~~QRLkDE~RDLKqEl~ 48 (166)
T PF04880_consen 21 SELDEKENLREEVQRLKDELRDLKQELI 48 (166)
T ss_dssp HHHHHHHHHHHCH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888899999999999999999883
No 365
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=28.76 E-value=6.5e+02 Score=25.76 Aligned_cols=76 Identities=25% Similarity=0.233 Sum_probs=47.2
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 578 GEEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQAL----------HERRLALEQDVSRLQEQLQAERDLRAAL 647 (724)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~----------~~~r~~Le~~V~~L~~~L~~e~~~~~~l 647 (724)
.+.|.---+||+-|.-+...|+.--.-=+-||+-|..++... +.-=.+|+.+-..+|.||.+=..==..|
T Consensus 101 A~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~L 180 (192)
T PF11180_consen 101 ADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQL 180 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778999999999999765555566888887666532 2222335555555566665433333445
Q ss_pred HHhhCC
Q 004901 648 EVGLSM 653 (724)
Q Consensus 648 e~~l~~ 653 (724)
+...+.
T Consensus 181 q~q~~~ 186 (192)
T PF11180_consen 181 QRQANE 186 (192)
T ss_pred HHHhcC
Confidence 555543
No 366
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=28.71 E-value=2.2e+02 Score=30.54 Aligned_cols=74 Identities=18% Similarity=0.213 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 004901 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIA-------LAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia-------~~E~~v~~le~~~~~l~~~l 696 (724)
++|-+-=+.|-..|.+|..+|.+...|+.++.-.-.+-..|=.-++++..+|. -++.+.++|+.|+.--+..|
T Consensus 127 seit~~GA~LydlL~kE~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~EL 206 (267)
T PF10234_consen 127 SEITQRGASLYDLLGKEVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQEL 206 (267)
T ss_pred HHHHHHHHHHHHHHhchHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667778888999999999999988888553222222334444445555544 44444455555555444444
Q ss_pred H
Q 004901 697 N 697 (724)
Q Consensus 697 ~ 697 (724)
-
T Consensus 207 E 207 (267)
T PF10234_consen 207 E 207 (267)
T ss_pred H
Confidence 3
No 367
>PRK12704 phosphodiesterase; Provisional
Probab=28.34 E-value=5.4e+02 Score=30.35 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004901 617 QALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L 637 (724)
+...++|.++|+++...+.+|
T Consensus 64 eE~~~~R~Ele~e~~~~e~~L 84 (520)
T PRK12704 64 EEIHKLRNEFEKELRERRNEL 84 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666777776665555444
No 368
>PRK11239 hypothetical protein; Provisional
Probab=28.15 E-value=80 Score=32.64 Aligned_cols=29 Identities=28% Similarity=0.229 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 673 EEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
..++.||++|..||++|..|+.+|.+-+.
T Consensus 183 ~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 183 AVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999887655
No 369
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=28.06 E-value=4e+02 Score=24.80 Aligned_cols=63 Identities=24% Similarity=0.374 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
+|+.=-.|.++|.+|++-+. +...++=. +-+++-..+-||...|+-||..+..|+..|.+++-
T Consensus 6 ~~~q~~~l~~~v~~lRed~r------~SEdrsa~-------SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVsemKp 68 (112)
T PF07439_consen 6 LHQQLGTLNAEVKELREDIR------RSEDRSAA-------SRASMHRRLDELVERVTTLESSVSTLKADVSEMKP 68 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHhccc
Confidence 45555678888888877665 22222110 11334557789999999999999999999988753
No 370
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=27.94 E-value=61 Score=32.28 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHH
Q 004901 592 NDLRHRIAKEARGNAILQASLER 614 (724)
Q Consensus 592 ~~~~~~~~~~~~~n~~~~~~~~~ 614 (724)
.|+..|....+--||.|..-|..
T Consensus 3 eD~EsklN~AIERnalLE~ELdE 25 (166)
T PF04880_consen 3 EDFESKLNQAIERNALLESELDE 25 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHH
Confidence 36778888888899999998854
No 371
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=27.66 E-value=5.7e+02 Score=24.71 Aligned_cols=28 Identities=21% Similarity=0.290 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 670 AELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
.|=.-|.+||+++...+..+......|.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~ 104 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLR 104 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666665555554444
No 372
>PRK11546 zraP zinc resistance protein; Provisional
Probab=27.48 E-value=2e+02 Score=28.04 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=35.6
Q ss_pred hhhhHHHHHHH-HHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 004901 588 EITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDL-RAALEV 649 (724)
Q Consensus 588 ~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~-~~~le~ 649 (724)
-..-.+|+.+| +|..-=||.+++.- +=.++-.+|-+|+..|+.+|.+++.. +..++.
T Consensus 60 ~~~t~~LRqqL~aKr~ELnALl~~~~-----pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~~~~k 118 (143)
T PRK11546 60 YAQTSALRQQLVSKRYEYNALLTANP-----PDSSKINAVAKEMENLRQSLDELRVKRDIAMAE 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555 56666666665542 22344568999999999999988753 344444
No 373
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=27.20 E-value=1.3e+02 Score=34.25 Aligned_cols=22 Identities=27% Similarity=0.697 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004901 628 QDVSRLQEQLQAERDLRAALEV 649 (724)
Q Consensus 628 ~~V~~L~~~L~~e~~~~~~le~ 649 (724)
.|+++|.+.|.+|+.||.-||-
T Consensus 594 kel~kl~~dleeek~mr~~lem 615 (627)
T KOG4348|consen 594 KELEKLRKDLEEEKTMRSNLEM 615 (627)
T ss_pred HHHHHHHHHHHHHHHHHhhhHh
Confidence 4667777888888888876553
No 374
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=27.18 E-value=7.4e+02 Score=25.89 Aligned_cols=81 Identities=23% Similarity=0.346 Sum_probs=49.0
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHH-HHHHHHHHHHH
Q 004901 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEI-ALAEADVARLK 686 (724)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~ei-a~~E~~v~~le 686 (724)
++.-...|..........|..+|..|+..+..|+.-|..-|.-+-. +..++..-| ..++.+....|
T Consensus 108 i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~~R~erE~~i~k-------------rl~e~~~~l~~~i~~Ek~~Re 174 (247)
T PF06705_consen 108 IQEEKEERPQDIEELNQELVRELNELQEAFENERNEREEREENILK-------------RLEEEENRLQEKIEKEKNTRE 174 (247)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555566678888888888888888888766654421 111121111 24566667777
Q ss_pred HHHHHHHHHHHHHHh
Q 004901 687 QKVAELHHQLNQQRQ 701 (724)
Q Consensus 687 ~~~~~l~~~l~~~~~ 701 (724)
+.+.+|+..|.+-+.
T Consensus 175 ~~~~~l~~~le~~~~ 189 (247)
T PF06705_consen 175 SKLSELRSELEEVKR 189 (247)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776665544
No 375
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=26.88 E-value=84 Score=33.32 Aligned_cols=25 Identities=24% Similarity=0.543 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHH
Q 004901 617 QALHERRLALEQDVSRLQE---QLQAER 641 (724)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~---~L~~e~ 641 (724)
+.|.+||.+|+.+|++|.. |+++|+
T Consensus 7 ~eL~qrk~~Lq~eIe~LerR~~ri~~Em 34 (283)
T PF11285_consen 7 KELEQRKQALQIEIEQLERRRERIEKEM 34 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888853 455443
No 376
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=26.70 E-value=1.5e+02 Score=31.27 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=23.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 004901 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQE 635 (724)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~ 635 (724)
+-|++|-.--.-||-++....-.+-.|||+.+ +-...|-+|+-.+.+||+
T Consensus 16 L~v~~LhHQvlTLqcQLRDQ~~ahreLQas~d----Ea~~L~~~L~~kl~eLqk 65 (277)
T PF15030_consen 16 LRVQQLHHQVLTLQCQLRDQGSAHRELQASRD----EATRLQDELQGKLEELQK 65 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555532 222334444444444443
No 377
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=26.68 E-value=2e+02 Score=25.91 Aligned_cols=28 Identities=46% Similarity=0.687 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHhhC
Q 004901 625 ALEQDVSRLQEQLQ------AERDLRAALEVGLS 652 (724)
Q Consensus 625 ~Le~~V~~L~~~L~------~e~~~~~~le~~l~ 652 (724)
.+..++++||+||. .||=-|.||.++|.
T Consensus 7 ~I~~eI~kLqe~lk~~e~keAERigRiAlKAGLg 40 (98)
T PRK13848 7 KIREEIAKLQEQLKQAETREAERIGRIALKAGLG 40 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 45566777777775 47778888888875
No 378
>TIGR02473 flagell_FliJ flagellar export protein FliJ. Members of this family are the FliJ protein found, in nearly every case, in the midst of other flagellar biosynthesis genes in bacgterial genomes. Typically the fliJ gene is found adjacent to the gene for the flagellum-specific ATPase FliI. Sequence scoring in the gray zone between trusted and noise cutoffs include both probable FliJ proteins and components of bacterial type III secretion systems.
Probab=26.28 E-value=5.3e+02 Score=23.93 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=24.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (724)
...-...|-..|...+..|..++..|...+..|-+.+
T Consensus 66 ~~~f~~~l~~~i~~q~~~l~~~~~~~e~~r~~l~~a~ 102 (141)
T TIGR02473 66 YQRFIRQLDQRIQQQQQELALLQQEVEAKRERLLEAR 102 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556667777777777777777777776665443
No 379
>PRK12705 hypothetical protein; Provisional
Probab=26.25 E-value=5.8e+02 Score=30.06 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 617 QALHERRLALEQDVSRLQEQLQAE 640 (724)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L~~e 640 (724)
...+.+|.++|+|+...+..++..
T Consensus 59 ~~~~~~~~~~e~e~~~~~~~~~~~ 82 (508)
T PRK12705 59 ELLLRERNQQRQEARREREELQRE 82 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666665555433
No 380
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=26.18 E-value=1.3e+02 Score=31.08 Aligned_cols=60 Identities=30% Similarity=0.438 Sum_probs=42.0
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH---------HHHHHHHHHHHHHHHHHHHHHH
Q 004901 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ---------ALHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~---------~~~~~r~~Le~~V~~L~~~L~~ 639 (724)
|.|-.+--||..|+.|++.|.+- ..-+.|+-+|||-+- ..+|-=..+.+||..|+.||.-
T Consensus 124 e~EklkndlEk~ks~lr~ei~~~-~a~~rLdLNLEkgr~~d~~~~~~l~~~e~s~kId~Ev~~lk~qi~s 192 (220)
T KOG3156|consen 124 ENEKLKNDLEKLKSSLRHEISKT-TAEFRLDLNLEKGRIKDESSSHDLQIKEISTKIDQEVTNLKTQIES 192 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-chhceeecchhhccccchhhhcchhHhHHHHHHHHHHHHHHHHHHH
Confidence 56777778888899999988753 333468888886543 2234445688888888888753
No 381
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=26.08 E-value=1e+03 Score=27.30 Aligned_cols=108 Identities=29% Similarity=0.335 Sum_probs=67.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhh---hhhhhhHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 004901 580 EELAIQRLEITKNDLRHRIAKEARGN---AILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVG--- 650 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n---~~~~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~--- 650 (724)
|=...||.|..--|||.|+.|+--+| |+=.-.|+++-. .|.+-|.-+|.+-.+ + +=..||.+|++|
T Consensus 250 dle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~r--k---elE~lR~~L~kAEke 324 (575)
T KOG4403|consen 250 DLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSR--K---ELEQLRVALEKAEKE 324 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHH--H---HHHHHHHHHHHHHHH
Confidence 44567899999999999997655443 333334554433 345556566655554 2 224688888887
Q ss_pred hCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 651 LSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 651 l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
|... .+-+-|...|..|.= .-|.||.+++.|-.+-..||-..
T Consensus 325 le~n-----S~wsaP~aLQ~wLq~--T~E~E~q~~~kkrqnaekql~~A 366 (575)
T KOG4403|consen 325 LEAN-----SSWSAPLALQKWLQL--THEVEVQYYNKKRQNAEKQLKEA 366 (575)
T ss_pred HHhc-----cCCCCcHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHH
Confidence 3322 235567778888863 45667777777766666665543
No 382
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=25.91 E-value=7.2e+02 Score=25.33 Aligned_cols=64 Identities=27% Similarity=0.316 Sum_probs=48.2
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHER--RL-ALEQDVSRLQEQLQAERDLRAALEV 649 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~--r~-~Le~~V~~L~~~L~~e~~~~~~le~ 649 (724)
+|+..+..+.+|+...+.=-+--|-|+-+.|.||..+++. |. +|.++..-|+++ +..+|.-|..
T Consensus 75 a~~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K~~~e~tEer~~el~kklnslkk~---~e~lr~el~k 141 (203)
T KOG3433|consen 75 AICDRKSVLQELESQLATGSQKKATLGESIENRKAGREETEERTDELTKKLNSLKKI---LESLRWELAK 141 (203)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 6778888888888888776677788888999999877543 55 888888888884 3456655554
No 383
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=25.81 E-value=2.2e+02 Score=24.67 Aligned_cols=36 Identities=36% Similarity=0.525 Sum_probs=25.6
Q ss_pred HHHHhhhhhHHHHHHHH---HHhhhhh----hhhhhHHHhHHH
Q 004901 583 AIQRLEITKNDLRHRIA---KEARGNA----ILQASLERRKQA 618 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~---~~~~~n~----~~~~~~~~~~~~ 618 (724)
-|+|||.-|..+...|. .|||+|- ++-.-+.-||..
T Consensus 12 RiErLEeEk~~i~~dikdVyaEAK~~GfD~K~lr~ii~lRk~d 54 (74)
T PF10073_consen 12 RIERLEEEKKAISDDIKDVYAEAKGNGFDTKALRQIIRLRKKD 54 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHcCC
Confidence 48999999999998884 5888884 444444445544
No 384
>PRK11281 hypothetical protein; Provisional
Probab=25.77 E-value=7.2e+02 Score=32.25 Aligned_cols=35 Identities=29% Similarity=0.356 Sum_probs=21.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHH
Q 004901 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLER 614 (724)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 614 (724)
++-+.|+-||.+..-|+ +|.+.-+.++.||..++.
T Consensus 57 ~~k~~~~~l~~tL~~L~-qi~~~~~~~~~L~k~l~~ 91 (1113)
T PRK11281 57 EDKLVQQDLEQTLALLD-KIDRQKEETEQLKQQLAQ 91 (1113)
T ss_pred hhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 45566777777765554 445555556666665554
No 385
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=25.64 E-value=1.1e+03 Score=27.48 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHH
Q 004901 593 DLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQ 634 (724)
Q Consensus 593 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~ 634 (724)
.++.++..-.-.++.|++.++..+++..+++..|++-=.+|.
T Consensus 71 ~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~ 112 (475)
T PRK10361 71 SLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLS 112 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333443444555555555555555555444444433333
No 386
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=25.60 E-value=1.4e+02 Score=23.98 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=22.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHH
Q 004901 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE 621 (724)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 621 (724)
--+||..|.+++.+|.+|- |.-|+.|.+.+.+
T Consensus 17 k~kLd~Kk~Eil~~ln~EY------~kiLk~r~~~lEe 48 (56)
T PF08112_consen 17 KSKLDEKKSEILSNLNMEY------EKILKQRRKELEE 48 (56)
T ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 3578899999999998874 4445555555543
No 387
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=24.89 E-value=1.6e+02 Score=24.46 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~ 652 (724)
.+.+|-..|+-|++||+.+|-+-.+-|.|-|.-+.
T Consensus 29 El~eRIalLq~EIeRlkAe~~kK~~srsAAeaLFr 63 (65)
T COG5509 29 ELEERIALLQAEIERLKAELAKKKASRSAAEALFR 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHh
Confidence 45666667788888888888888888877766543
No 388
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.88 E-value=1.1e+03 Score=27.18 Aligned_cols=72 Identities=19% Similarity=0.081 Sum_probs=39.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhh-----hhhhHHHhHHHHHHHHHH------------HHHHHHHHHHHHHHHHHH
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAI-----LQASLERRKQALHERRLA------------LEQDVSRLQEQLQAERDL 643 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~-----~~~~~~~~~~~~~~~r~~------------Le~~V~~L~~~L~~e~~~ 643 (724)
+..+..=|..=|+|-+|++++.=.-|. .+..+..-+.+|.++|.. +-+-|.+||.||-+.+.=
T Consensus 222 ~aLL~~sE~~VN~Ls~rar~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~ae 301 (434)
T PRK15178 222 QRILSFAEQHVNTVSARMQKERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAE 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666544322221 122222333344444422 446788999999888777
Q ss_pred HHHHHHhhC
Q 004901 644 RAALEVGLS 652 (724)
Q Consensus 644 ~~~le~~l~ 652 (724)
..+|...+.
T Consensus 302 L~~L~~~~~ 310 (434)
T PRK15178 302 YAQLMVNGL 310 (434)
T ss_pred HHHHHhhcC
Confidence 676765543
No 389
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=24.78 E-value=9.7e+02 Score=26.44 Aligned_cols=115 Identities=25% Similarity=0.226 Sum_probs=73.8
Q ss_pred CcccCCCCchHHHHHHHhhhhh--HHHHHHHHHHhhhhh--hhhhhHHHhHHHHHHHHHHHH---HHHHHHHHHHHH--H
Q 004901 570 SVESIDSSGEEELAIQRLEITK--NDLRHRIAKEARGNA--ILQASLERRKQALHERRLALE---QDVSRLQEQLQA--E 640 (724)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~n~--~~~~~~~~~~~~~~~~r~~Le---~~V~~L~~~L~~--e 640 (724)
.-|.-|.|.---++|+-=|+++ .++|..++.+||-|= -||..-..--++++.+|.-|| +|-.-+.++-++ |
T Consensus 96 gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~elK~i~hh~KKLEgRRldyD~kkkk~~K~~d 175 (366)
T KOG1118|consen 96 GKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKELKDIQHHRKKLEGRRLDYDYKKKKQGKIKD 175 (366)
T ss_pred HHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHhccCCh
Confidence 4456677777788888888876 588899999999984 477663333344444444443 344455666666 8
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 641 RDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 641 ~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
.+||.|||.-=+ ++-.+.-.=++++|.||...+|=+.=+..||.
T Consensus 176 EelrqA~eKfEE-------------SkE~aE~sM~nlle~d~eqvsqL~~Li~aqLd 219 (366)
T KOG1118|consen 176 EELRQALEKFEE-------------SKELAEDSMFNLLENDVEQVSQLSALIQAQLD 219 (366)
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 999999987322 11122222367788887777776666666665
No 390
>KOG4095 consensus Uncharacterized conserved protein (tumor-specific protein BCL7 in humans) [General function prediction only]
Probab=24.76 E-value=31 Score=33.51 Aligned_cols=25 Identities=32% Similarity=0.694 Sum_probs=21.3
Q ss_pred CCCcEEEEEEEeCCeEEEEcCCCCC
Q 004901 34 WKSWKKRWFILTRTSLVFFKNDPSA 58 (724)
Q Consensus 34 ~k~WKKRWFVL~~~~L~yYKd~~~~ 58 (724)
.+.|-|+|+.+.+..|.+||--+-+
T Consensus 28 VRrWEKKwVtvgDTslRIyKWVPVt 52 (165)
T KOG4095|consen 28 VRRWEKKWVTVGDTSLRIYKWVPVT 52 (165)
T ss_pred HHHHhhheEeecccceEEEEeeecc
Confidence 5679999999999999999975543
No 391
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=24.71 E-value=4.3e+02 Score=24.12 Aligned_cols=70 Identities=13% Similarity=0.224 Sum_probs=45.1
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhh-------hHHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQA-------SLERRKQALHER--RLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~-------~~~~~~~~~~~~--r~~Le~~V~~L~~~L~~e~~~~~~le~~l~ 652 (724)
+|.++-..-.+++.+|...-+.|-.+.. .+..-++..... ...+.+.+.+++..|+.++..-.++...+.
T Consensus 4 ~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v~k~v~q 82 (106)
T PF05837_consen 4 EILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRVMKNVFQ 82 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777655554433321 111111111222 257889999999999999999999998775
No 392
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=24.65 E-value=1.6e+03 Score=28.84 Aligned_cols=121 Identities=21% Similarity=0.175 Sum_probs=71.5
Q ss_pred CchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHH-------HhHHHH--HHHHHHHHHHHHHHH--H--HHHHHHHH
Q 004901 577 SGEEELAIQRLEITKNDLRHRIAKEARGNAILQASLE-------RRKQAL--HERRLALEQDVSRLQ--E--QLQAERDL 643 (724)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~-------~~~~~~--~~~r~~Le~~V~~L~--~--~L~~e~~~ 643 (724)
|-.-|+-|+|+-..--+-+.+|..+.+.+.--+..+- -.+... |.+++--..++.-|. + |+.-|..+
T Consensus 59 cp~kelfi~riq~ldlete~a~~~~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~id~~qe~se~i~ 138 (1195)
T KOG4643|consen 59 CPTKELFIQRIQILDLETEMAQMRTIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSVIDDLQEASEKIA 138 (1195)
T ss_pred CCcHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888999988888888888766666554443321 112223 566555444443222 2 34445554
Q ss_pred HHHHH-HhhCCCCC-------CCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 644 RAALE-VGLSMSSG-------QFSSS-RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 644 ~~~le-~~l~~~~~-------~~~~~-~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
-.-|+ +|++...- ....| ...-.+-.+|=.|||.+|+-|..|++++.+=--+|.
T Consensus 139 e~~le~vGl~~~~~~s~s~~~~~~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll 201 (1195)
T KOG4643|consen 139 EKLLELVGLEKKYRESRSGKELYKSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLL 201 (1195)
T ss_pred HHHHHHhcccceeeccccCCCCCCCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 66665321 22233 334556778889999999999999888765433333
No 393
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=24.32 E-value=2.6e+02 Score=28.62 Aligned_cols=47 Identities=30% Similarity=0.386 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (724)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (724)
||+|-.+|+++|..|+.-+..+|.-.. .-++.|++|..++++=|.-|
T Consensus 139 LEkEReRLkq~lE~Ek~~~~~~EkE~~--------------------K~~~~l~eE~~k~K~~~l~L 185 (192)
T PF09727_consen 139 LEKERERLKQQLEQEKAQQKKLEKEHK--------------------KLVSQLEEERTKLKSFVLML 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998887544 34667888888888766544
No 394
>KOG0689 consensus Guanine nucleotide exchange factor for Rho and Rac GTPases [Signal transduction mechanisms]
Probab=23.94 E-value=61 Score=37.28 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=29.9
Q ss_pred CCcceEEEEecCCCCc-eEEEEeCCHHHHHHHHHHHHHHH
Q 004901 86 DKKLLTVLFPDGRDGR-AFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 86 ~Kk~~fvit~~~~~gr-~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
.....|.+..+....+ +|.++|.+.++.+.|+++|...+
T Consensus 321 ~s~~rF~i~~r~~~~~~~~vlqa~s~~~k~~W~~~i~~~l 360 (448)
T KOG0689|consen 321 NSASRFEIWFRGRKKREAYVLQAGSKEIKYAWTRAISSLL 360 (448)
T ss_pred CCCcchhhhhhcccccceeEEeeCCHHHHHHHHHHHHHHH
Confidence 3345577766544433 79999999999999999998776
No 395
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=23.79 E-value=7.3e+02 Score=31.06 Aligned_cols=45 Identities=29% Similarity=0.324 Sum_probs=30.6
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHH
Q 004901 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDV 630 (724)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V 630 (724)
-|-||..| ++++.|....|.+|.+.--|+.|+. .|+|-.+|+++.
T Consensus 184 Nq~l~klk-q~~~ei~e~eke~a~yh~lLe~r~~-~~~rl~~l~~el 228 (984)
T COG4717 184 NQLLEKLK-QERNEIDEAEKEYATYHKLLESRRA-EHARLAELRSEL 228 (984)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHH
Confidence 34555556 9999999999999999888876543 333333344433
No 396
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=23.40 E-value=5.5e+02 Score=27.64 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=11.7
Q ss_pred cchhhhHHHHHhhCCCCCCC
Q 004901 232 HVIGDCVKHVLRELPSSPVP 251 (724)
Q Consensus 232 h~vA~lLK~fLReLPePLlp 251 (724)
..++++++.|+..+-.+=||
T Consensus 8 ~~L~~L~~~Yv~aIn~G~vP 27 (297)
T PF02841_consen 8 PMLAELVKSYVDAINSGSVP 27 (297)
T ss_dssp HHHHHHHHHHHHHHHTTS--
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 34567777777666666554
No 397
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=23.26 E-value=3.9e+02 Score=24.48 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=24.1
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH
Q 004901 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQ 617 (724)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 617 (724)
|.+|.+....+..-|......|..|++.+..=++
T Consensus 27 i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~ 60 (110)
T PF10828_consen 27 IDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQ 60 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667766666777787778888888887664433
No 398
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.16 E-value=4.6e+02 Score=30.18 Aligned_cols=87 Identities=18% Similarity=0.299 Sum_probs=51.4
Q ss_pred hhhhhHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHH
Q 004901 607 ILQASLERRK--QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVAR 684 (724)
Q Consensus 607 ~~~~~~~~~~--~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~ 684 (724)
+++.++.+|+ ...-+.=.+|+.+..+|+.+++.=+..|..|-..+++... .... .+.+|++|+..+=.++..
T Consensus 13 ~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~-----~~~~-~~~~l~~e~~~l~~~l~~ 86 (429)
T COG0172 13 AVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALK-----RGED-DAEELIAEVKELKEKLKE 86 (429)
T ss_pred HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ccch-hHHHHHHHHHHHHHHHHh
Confidence 4555555553 2223444455555555555555555556666555542111 1122 567888888888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 004901 685 LKQKVAELHHQLNQQ 699 (724)
Q Consensus 685 le~~~~~l~~~l~~~ 699 (724)
+|.++.++..+|.+-
T Consensus 87 ~e~~~~~~~~~l~~~ 101 (429)
T COG0172 87 LEAALDELEAELDTL 101 (429)
T ss_pred ccHHHHHHHHHHHHH
Confidence 888888887777654
No 399
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=23.16 E-value=4.9e+02 Score=31.58 Aligned_cols=88 Identities=23% Similarity=0.223 Sum_probs=51.9
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHhHHHH-----------HHHHHHHHHHHHHHHHHHHH--------------H-HHHHHH
Q 004901 593 DLRHRIAKEARGNAILQASLERRKQAL-----------HERRLALEQDVSRLQEQLQA--------------E-RDLRAA 646 (724)
Q Consensus 593 ~~~~~~~~~~~~n~~~~~~~~~~~~~~-----------~~~r~~Le~~V~~L~~~L~~--------------e-~~~~~~ 646 (724)
.+|.+|+.----|+.+||++..-+..+ +++...|=|.|..|+..|+. | .+|.+-
T Consensus 541 ~sr~~~~~le~~~~a~qat~d~a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrR 620 (961)
T KOG4673|consen 541 NSRALAAALEAQALAEQATNDEARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRR 620 (961)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666544445778888877666644 34444566677777666642 2 123334
Q ss_pred HHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHH
Q 004901 647 LEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVA 683 (724)
Q Consensus 647 le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~ 683 (724)
|+.|=.|. -.+...+|.-|+-||--|..|-++..
T Consensus 621 lqaaE~R~---eel~q~v~~TTrPLlRQIE~lQ~tl~ 654 (961)
T KOG4673|consen 621 LQAAERRC---EELIQQVPETTRPLLRQIEALQETLS 654 (961)
T ss_pred HHHHHHHH---HHHHhhccccccHHHHHHHHHHHHHh
Confidence 44443322 12345577778889988888877653
No 400
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=23.08 E-value=9.3e+02 Score=30.89 Aligned_cols=28 Identities=21% Similarity=0.322 Sum_probs=17.4
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 610 ASLERRKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
...+.+-++...+.-.|+..|..+++|+
T Consensus 361 ~~~~n~i~~~k~~~d~l~k~I~~~~~~~ 388 (1074)
T KOG0250|consen 361 REIENSIRKLKKEVDRLEKQIADLEKQT 388 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555666666777777777776
No 401
>KOG4140 consensus Nuclear protein Ataxin-7 [Chromatin structure and dynamics]
Probab=23.07 E-value=4.1e+02 Score=30.85 Aligned_cols=30 Identities=17% Similarity=0.124 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Q 004901 624 LALEQDVSRLQEQLQAERDLRAALEVGLSM 653 (724)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~le~~l~~ 653 (724)
.++++|...++.|||.|..-++-+.+-.+.
T Consensus 291 r~~~~~~~~~~~Q~Q~~~~~~~~~~~~~~~ 320 (659)
T KOG4140|consen 291 REFDPDIHCGVIQLQTKKPCTRSLTCKTHS 320 (659)
T ss_pred hhhhhhhhhhhHhhccCCCcchhHHHhhhH
Confidence 478999999999999999988888776543
No 402
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=23.07 E-value=1.2e+03 Score=28.94 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=41.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHH--HH---HHHHHHHHHHHHHHH
Q 004901 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE--RR---LALEQDVSRLQEQLQ 638 (724)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~--~r---~~Le~~V~~L~~~L~ 638 (724)
+-|--||-|-+-|..|+.+.-.++-.|.-.|-.-.++..-... || ..||.|...++.||.
T Consensus 45 ~aeniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQir 109 (1265)
T KOG0976|consen 45 DAENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIR 109 (1265)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3566789999999999999999999998888765544433222 22 235666665555554
No 403
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=22.79 E-value=2e+02 Score=33.41 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004901 673 EEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~ 694 (724)
+.|..+|+|+..|+.++..+..
T Consensus 104 ~KIkeLEaE~~~Lk~Ql~a~~~ 125 (475)
T PRK13729 104 RRIEKLGQDNAALAEQVKALGA 125 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 3455677777777777644433
No 404
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=22.67 E-value=5e+02 Score=24.87 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=14.5
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHHHHHHHHHH
Q 004901 604 GNAILQASLERRKQALHERRLALEQDVSRLQ 634 (724)
Q Consensus 604 ~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~ 634 (724)
|+..+.+=+++-.......|..++.-|..+.
T Consensus 37 G~k~F~~LVk~Ge~~e~~~~~~~~e~~~~~~ 67 (132)
T PF05597_consen 37 GSKVFEALVKEGEKLEKKTRKKAEEQVEEAR 67 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444444444444443
No 405
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=22.67 E-value=8.4e+02 Score=24.98 Aligned_cols=88 Identities=25% Similarity=0.313 Sum_probs=40.4
Q ss_pred hhhhhhhhhhHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHH
Q 004901 602 ARGNAILQASLERRKQ---ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALA 678 (724)
Q Consensus 602 ~~~n~~~~~~~~~~~~---~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~ 678 (724)
+-+|+.||.+++.--. .|-+--..|.+...-||+-|+..+.|..=||..=. ....+-...+.|++.--.+
T Consensus 21 ~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~-------~~~~lEE~~~~L~aq~rql 93 (193)
T PF14662_consen 21 ADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKT-------LAKSLEEENRSLLAQARQL 93 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence 3567777777663322 12222223444444444444544444443333111 0122334445555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004901 679 EADVARLKQKVAELHHQL 696 (724)
Q Consensus 679 E~~v~~le~~~~~l~~~l 696 (724)
|.+.-.|..+|..|+.+.
T Consensus 94 EkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 94 EKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555555555555555443
No 406
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=22.58 E-value=1e+02 Score=35.75 Aligned_cols=29 Identities=17% Similarity=0.316 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
..++.+|+.|+.+|..||+|+.+|..++.
T Consensus 27 ~~~~qkie~L~kql~~Lk~q~~~l~~~v~ 55 (489)
T PF11853_consen 27 IDLLQKIEALKKQLEELKAQQDDLNDRVD 55 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 34566888888888888888887777664
No 407
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=22.49 E-value=3.7e+02 Score=28.96 Aligned_cols=85 Identities=18% Similarity=0.267 Sum_probs=39.0
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 611 SLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQKV 689 (724)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~-~~~~~~~~~~~ll~eia~~E~~v~~le~~~ 689 (724)
.|++-|+....|.+.||---+-||+|-|+..+-+.-. .+|.+-...|. ....+...-+.|--|+.+=|.-|..||-++
T Consensus 26 QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~-s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl 104 (307)
T PF10481_consen 26 QLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEY-SALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQL 104 (307)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence 4455555555555555555555555554433322110 11221111121 122334444555556666666666665555
Q ss_pred HHHHHHH
Q 004901 690 AELHHQL 696 (724)
Q Consensus 690 ~~l~~~l 696 (724)
...+.+|
T Consensus 105 ~s~Kkqi 111 (307)
T PF10481_consen 105 NSCKKQI 111 (307)
T ss_pred HHHHHHH
Confidence 5555544
No 408
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.31 E-value=3.6e+02 Score=27.66 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERD 642 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (724)
-..+-|..++++..+...+|+.|..
T Consensus 145 ii~~A~~~Ie~Ek~~a~~~Lk~ei~ 169 (205)
T PRK06231 145 IIFQARQEIEKERRELKEQLQKESV 169 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777777777777777654
No 409
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=22.21 E-value=1.4e+02 Score=24.78 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 668 TRAELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
+-+|=+=|++||+||.++|..+..=.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~ 48 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKS 48 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455559999999999999876543
No 410
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.08 E-value=1.5e+03 Score=28.08 Aligned_cols=17 Identities=18% Similarity=-0.007 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHHHHh
Q 004901 109 TSEDLYEWKTALELALA 125 (724)
Q Consensus 109 SeeE~~eWi~AL~~ai~ 125 (724)
+..+..+|+..+..+..
T Consensus 39 ~~~~i~~~l~~~~e~~~ 55 (771)
T TIGR01069 39 SVEESKEIIIKLTALGS 55 (771)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 56777888888777764
No 411
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=22.06 E-value=2.5e+02 Score=29.64 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=22.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (724)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l 651 (724)
..+.+.|+.+-..||.++.+|+++|.+...|...|+..+
T Consensus 17 ~~e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~~~L~~~F 55 (236)
T PF12017_consen 17 KIENKKLKKKIRRLEKELKKLKQKLEKYQKLENSLKQIF 55 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444444577777777777766666655555443
No 412
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=22.03 E-value=7.8e+02 Score=24.33 Aligned_cols=23 Identities=43% Similarity=0.628 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004901 619 LHERRLALEQDVSRLQEQLQAER 641 (724)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~~e~ 641 (724)
+.++-.+++.+...+++.++...
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344444444444444444444
No 413
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.02 E-value=6.1e+02 Score=23.10 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=28.7
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 661 SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 661 ~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
....+.-...|=..|..+|..|..|+++...|+.++...+.
T Consensus 62 ~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~ 102 (110)
T TIGR02338 62 KTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQE 102 (110)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555566778888888888888888888775543
No 414
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.82 E-value=6.4e+02 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 670 AELEEIALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l 696 (724)
.+-+||+.++.++...|..+..|+.|.
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQS 184 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 415
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=21.68 E-value=7.3e+02 Score=24.77 Aligned_cols=31 Identities=16% Similarity=0.291 Sum_probs=23.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
...+.++|-.||+..|.++..|++|...|..
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777888888888888887754
No 416
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=21.54 E-value=8.3e+02 Score=31.72 Aligned_cols=75 Identities=23% Similarity=0.260 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHH--HHHHH-HHHHHHHHHHHHHH
Q 004901 617 QALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE--IALAE-ADVARLKQKVAELH 693 (724)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~e--ia~~E-~~v~~le~~~~~l~ 693 (724)
....+.+..|+.+|.+|+++|...+.....+...+... +.--+.|.+- -+..| +++.+|-.+-.++.
T Consensus 504 ~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv----------~~~rk~le~~~~d~~~e~~~~~kl~~~~~e~~ 573 (1317)
T KOG0612|consen 504 SEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKV----------NSLRKQLEEAELDMRAESEDAGKLRKHSKELS 573 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----------HHHHHHHHHhhhhhhhhHHHHhhHhhhhhhhh
Confidence 34456677788888888888877766555544433311 1111111111 11122 23667777778888
Q ss_pred HHHHHHHh
Q 004901 694 HQLNQQRQ 701 (724)
Q Consensus 694 ~~l~~~~~ 701 (724)
.++.+++.
T Consensus 574 ~~iq~~~e 581 (1317)
T KOG0612|consen 574 KQIQQELE 581 (1317)
T ss_pred HHHHHHhh
Confidence 88888877
No 417
>PRK13411 molecular chaperone DnaK; Provisional
Probab=21.51 E-value=6.3e+02 Score=30.56 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=17.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 613 ERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
.++++++.+.|-+||.-+-+++..|+
T Consensus 521 D~~~~~~~eakN~lEs~iy~~r~~l~ 546 (653)
T PRK13411 521 DRRRKQLIELKNQADSLLYSYESTLK 546 (653)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455666777777777777777775
No 418
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=21.46 E-value=6.4e+02 Score=26.76 Aligned_cols=92 Identities=22% Similarity=0.247 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChh
Q 004901 591 KNDLRHRIAKEARGNAILQASLERRKQALHERRLA---LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSK 667 (724)
Q Consensus 591 ~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~---Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~ 667 (724)
-.+||.-+.+-..=-+.||+.++.-++..||-+++ |.--|+-|=++-++=-.|..-|-..|.+..+ . -..+-.-
T Consensus 39 hreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn~Li~~llqel~RHg~-~--~~lLse~ 115 (277)
T PF15030_consen 39 HRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERNRLITHLLQELHRHGP-A--NHLLSEL 115 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-h--hHHHHHH
Confidence 34666666665666667777777777777777776 6666666666655555555555555554422 1 2446667
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 004901 668 TRAELEEIALAEADVARL 685 (724)
Q Consensus 668 ~~~ll~eia~~E~~v~~l 685 (724)
++.++..+|++|=.-..|
T Consensus 116 a~~mv~DvALaEYaAtFL 133 (277)
T PF15030_consen 116 AQSMVNDVALAEYAATFL 133 (277)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 888899999988776665
No 419
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=21.45 E-value=8e+02 Score=30.92 Aligned_cols=116 Identities=26% Similarity=0.384 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHH------HHHHHH-----HHHHHHHHHHhh
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRL------QEQLQA-----ERDLRAALEVGL 651 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L------~~~L~~-----e~~~~~~le~~l 651 (724)
.|.-+|.+-.|||.+|. -+=|-...=..|--++=.|.++=..||.+|..| ++||++ |.+||.-|+-+=
T Consensus 425 ~~d~aEs~iadlkEQVD-AAlGAE~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~~ 503 (1243)
T KOG0971|consen 425 ELDQAESTIADLKEQVD-AALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMAK 503 (1243)
T ss_pred HHHHHHHHHHHHHHHHH-HhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 004901 652 SMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGS 706 (724)
Q Consensus 652 ~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s 706 (724)
+.. .-+-....+-.+-|.-.--+|.+.-+-|..|+.||..++.++.+|
T Consensus 504 g~~-------kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~Ss 551 (1243)
T KOG0971|consen 504 GAR-------KELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQESS 551 (1243)
T ss_pred hHH-------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
No 420
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=21.39 E-value=1e+03 Score=29.30 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 004901 670 AELEEIALAEADVARLKQKVAEL 692 (724)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l 692 (724)
+-|+.+..|+.++.-+++++..+
T Consensus 213 aAle~kn~L~~e~~s~kk~l~~~ 235 (916)
T KOG0249|consen 213 AALEDKNRLEQELESVKKQLEEM 235 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555555555555555555443
No 421
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.26 E-value=3.3e+02 Score=32.78 Aligned_cols=68 Identities=13% Similarity=0.128 Sum_probs=37.4
Q ss_pred HhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhcccc
Q 004901 242 LRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPL 321 (724)
Q Consensus 242 LReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~ 321 (724)
|-+-..|||.-.....+..+++.... .|+..+.. .|++.|.-...+.-..-+||+.-|-. -|.
T Consensus 218 LAERkPPlFnMNAMSALYHIAQNesP-------------tLqs~eWS--~~F~~Fvd~CLqKipqeRptse~ll~--H~f 280 (948)
T KOG0577|consen 218 LAERKPPLFNMNAMSALYHIAQNESP-------------TLQSNEWS--DYFRNFVDSCLQKIPQERPTSEELLK--HRF 280 (948)
T ss_pred hhhcCCCccCchHHHHHHHHHhcCCC-------------CCCCchhH--HHHHHHHHHHHhhCcccCCcHHHHhh--cch
Confidence 45566789998888888888776542 34433322 23444444444444556666644322 234
Q ss_pred ccCCC
Q 004901 322 LLRPL 326 (724)
Q Consensus 322 Llr~~ 326 (724)
++|+.
T Consensus 281 v~R~R 285 (948)
T KOG0577|consen 281 VLRER 285 (948)
T ss_pred hccCC
Confidence 45544
No 422
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=21.17 E-value=8e+02 Score=24.16 Aligned_cols=71 Identities=18% Similarity=0.262 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---CCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 626 LEQDVSRLQEQLQAERDLRAALEVGL---SMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~le~~l---~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
.+..+.+++++|.....-|..+.... ....|.+..|.-+-. --...+++..++..|..|+.++..|...+.
T Consensus 103 ~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~D-y~~~~~~~~~l~~~i~~l~rk~~~l~~~i~ 176 (177)
T PF13870_consen 103 REEELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRD-YDKTKEEVEELRKEIKELERKVEILEMRIK 176 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44555556666665555555555443 334555555544422 334667888888999999999888877664
No 423
>PF13166 AAA_13: AAA domain
Probab=21.05 E-value=1.5e+03 Score=27.27 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
..+++..+..|...|.. ++.+|+.-+..+...+.+. .+......+...|..+++.|....+++..+.
T Consensus 324 ~~~~~~~~~~l~~~l~~---l~~~L~~K~~~~~~~~~~~-~~~~~~~~l~~~i~~~n~~i~~~n~~~~~~~ 390 (712)
T PF13166_consen 324 KEELKSAIEALKEELEE---LKKALEKKIKNPSSPIELE-EINEDIDELNSIIDELNELIEEHNEKIDNLK 390 (712)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHhccccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555532 5566665554443433322 2233334444445555554444444444433
No 424
>PF03471 CorC_HlyC: Transporter associated domain; InterPro: IPR005170 This small domain is found in a family of proteins with the CBS IPR002550 from INTERPRO domain and two CBS domains with this domain found at the C terminus of the proteins, the domain is also found at the C terminus of some Na+/H+ antiporters. This domain is also found in CorC that is involved in Magnesium and cobalt efflux. The function of this domain is uncertain but might be involved in modulating transport of ion substrates.; PDB: 3DED_F 2PLI_C 2R2Z_A 2P4P_A 2O3G_A 2P3H_A 3LLB_A 3LAE_A 2P13_B 2NQW_A ....
Probab=20.92 E-value=98 Score=26.48 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=32.7
Q ss_pred cCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccchhhhHHHHHhhCCC
Q 004901 198 VEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPS 247 (724)
Q Consensus 198 ~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~fLReLPe 247 (724)
.+|-|+++|... +..+.+.|+- .++. .+.+++|+++-..|..+|.
T Consensus 4 ~~~~~~v~G~~~-l~~l~~~~~~---~l~~-~~~~Tl~G~i~~~l~~iP~ 48 (81)
T PF03471_consen 4 DDGTYIVSGSTP-LDDLNELLGL---DLPE-EDYDTLGGLILEQLGRIPE 48 (81)
T ss_dssp TTSEEEEETTSB-HHHHHHHHTS----TTT-TTTSBHHHHHHHHHTSS--
T ss_pred cCCEEEEEecCC-HHHHHHHHCc---CCCc-cchhhHHHHHHHHcCCCCC
Confidence 368899999875 6677777763 3333 5788999999999999986
No 425
>PTZ00464 SNF-7-like protein; Provisional
Probab=20.83 E-value=9.4e+02 Score=24.87 Aligned_cols=22 Identities=27% Similarity=0.172 Sum_probs=17.1
Q ss_pred hHHHHHHHhhhhhHHHHHHHHH
Q 004901 579 EEELAIQRLEITKNDLRHRIAK 600 (724)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~ 600 (724)
.....|.+|+..-..|+.||.+
T Consensus 15 t~~d~~~~l~~r~~~l~kKi~~ 36 (211)
T PTZ00464 15 TLEDASKRIGGRSEVVDARINK 36 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 3566779999988888888844
No 426
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.82 E-value=4.6e+02 Score=22.87 Aligned_cols=57 Identities=23% Similarity=0.393 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (724)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (724)
.|.+.+..|+.+||+=+ .+++. -+| |.....+-..+|+.||+.+....+-+..++.+
T Consensus 25 d~~~~~~~lk~Klq~ar---~~i~~----lpg-------i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~ 81 (83)
T PF07544_consen 25 DLDTATGSLKHKLQKAR---AAIRE----LPG-------IDRSVEEQEEEIEELEEQIRKKREVLQKFKER 81 (83)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHh----CCC-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888999999998644 33332 111 45555677778888888877777766666543
No 427
>PRK13694 hypothetical protein; Provisional
Probab=20.54 E-value=1.6e+02 Score=25.92 Aligned_cols=37 Identities=35% Similarity=0.485 Sum_probs=26.5
Q ss_pred HHHHhhhhhHHHHHHHH---HHhhhhh----hhhhhHHHhHHHH
Q 004901 583 AIQRLEITKNDLRHRIA---KEARGNA----ILQASLERRKQAL 619 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~---~~~~~n~----~~~~~~~~~~~~~ 619 (724)
-|+|||.-|.++...|. -|||+|. ++-.-+.-||+.-
T Consensus 20 RIERLEeEkk~i~~dikdVyaEAK~~GfD~K~~r~ii~lRK~d~ 63 (83)
T PRK13694 20 RIERLEEEKKTISDDIKDVYAEAKGNGFDVKALKTIIRLRKKDD 63 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCH
Confidence 48999999999998884 5888884 4444455555543
No 428
>PF10768 FliX: Class II flagellar assembly regulator; InterPro: IPR019704 The FliX protein is possibly a transient component of the flagellum that is required for the assembly process. FliX may contribute to the targeting or assembly of the P- and L-ring protein monomers at the cell pole. The family carries a potential N-terminal signal sequence and at least one transmembrane domain indicating that it might function either in or in association with the cell membrane [].
Probab=20.52 E-value=3.7e+02 Score=26.12 Aligned_cols=26 Identities=38% Similarity=0.537 Sum_probs=20.8
Q ss_pred CCCChhHHHHHHHHHH-HHHHHHHHHH
Q 004901 662 RGMDSKTRAELEEIAL-AEADVARLKQ 687 (724)
Q Consensus 662 ~~~~~~~~~ll~eia~-~E~~v~~le~ 687 (724)
..-++...++|.||.+ +|.|++||++
T Consensus 113 ~s~Dp~L~~vL~eIELRa~VELAKl~~ 139 (139)
T PF10768_consen 113 SSGDPRLDAVLDEIELRAEVELAKLGR 139 (139)
T ss_pred cCCCchHHHHHHHHHHHHHHHHhhccC
Confidence 3447888999999986 7888888864
No 429
>smart00338 BRLZ basic region leucin zipper.
Probab=20.41 E-value=2.2e+02 Score=23.35 Aligned_cols=30 Identities=23% Similarity=0.364 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 670 AELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
+|=.++..|+.+...|..+|..|..++..-
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 430
>PF15277 Sec3-PIP2_bind: Exocyst complex component SEC3 N-terminal PIP2 binding PH; PDB: 3HIE_D 3A58_E.
Probab=20.26 E-value=2.2e+02 Score=25.31 Aligned_cols=32 Identities=9% Similarity=-0.009 Sum_probs=27.9
Q ss_pred ceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
..|.++. +++|+..|.+..|+..++..|-+..
T Consensus 57 ~~F~l~~----~k~y~W~a~s~~Ek~~Fi~~L~k~~ 88 (91)
T PF15277_consen 57 PEFDLTF----DKPYYWEASSAKEKNTFIRSLWKLY 88 (91)
T ss_dssp TEEEEES----SSEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCEEEEE----CCCcEEEeCCHHHHHHHHHHHHHHh
Confidence 4688887 6899999999999999999987654
No 431
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=20.22 E-value=9.1e+02 Score=27.79 Aligned_cols=74 Identities=20% Similarity=0.245 Sum_probs=51.4
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHH
Q 004901 609 QASLERRKQALHERRLALEQDVSRLQEQ---LQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARL 685 (724)
Q Consensus 609 ~~~~~~~~~~~~~~r~~Le~~V~~L~~~---L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~l 685 (724)
.+.+++-|..|.+.-..|-..|..||.- |++...-|. . .-.|.+++.+..+|..+..+|..|
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~Rg-----v----------Rp~~~qle~v~kdi~~a~~~L~~m 265 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRG-----V----------RPSPKQLETVAKDISRASKELKKM 265 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----C----------cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777777753 333332222 1 224788999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 004901 686 KQKVAELHHQLN 697 (724)
Q Consensus 686 e~~~~~l~~~l~ 697 (724)
+.++..++-.+.
T Consensus 266 ~~~i~~~kp~Wk 277 (424)
T PF03915_consen 266 KEYIKTEKPIWK 277 (424)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHhCHHHH
Confidence 999988775443
No 432
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=20.10 E-value=4.5e+02 Score=22.53 Aligned_cols=45 Identities=22% Similarity=0.363 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhhhhhhhhhHHH---hHHHHHHHHHHHHHHHHHHHHHH
Q 004901 593 DLRHRIAKEARGNAILQASLER---RKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 593 ~~~~~~~~~~~~n~~~~~~~~~---~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
.|..||..=+-..+.||-.++. +..++.+.+.+|+++..+|+..-
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~ 55 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQER 55 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3555565555555566654433 23355677888999998888543
No 433
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.09 E-value=4.1e+02 Score=28.57 Aligned_cols=40 Identities=25% Similarity=0.356 Sum_probs=27.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHH
Q 004901 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHE 621 (724)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~ 621 (724)
.+|+.+...-..++..|..=....+.|-+.+++||..+..
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER 208 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELER 208 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555566666766667778899999988876643
No 434
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=20.05 E-value=1.5e+02 Score=34.84 Aligned_cols=97 Identities=22% Similarity=0.243 Sum_probs=62.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSS 660 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~ 660 (724)
|.+--+-|+-+.+||.||| -||.- ++-+...+..|..-.+-|..-|.+|+.-+..|.-+=....+-..+
T Consensus 33 E~dr~~WElERaElqariA-------fLqgE----rk~qenlk~dl~rR~kmlE~~lkeerak~~~lq~gte~~~~d~~~ 101 (577)
T KOG0642|consen 33 ERDRARWELERAELQARIA-------FLQGE----RKGQENLKMDLVRRIKMLEFALKEERAKYNKLQPGTELPQLDEKP 101 (577)
T ss_pred hhhhhheehhhhhHHHHHH-------HHhcc----hhhhHHHHHHHHHHHhcccchhHHhhhhhhccccccccccccccc
Confidence 6667778999999999997 34421 222233344455555556667777888788777733444555555
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004901 661 SRGMDSKTRAELEEIALAEADVARLKQK 688 (724)
Q Consensus 661 ~~~~~~~~~~ll~eia~~E~~v~~le~~ 688 (724)
+...-+.+...++.+..+|+...-..+-
T Consensus 102 ~~~~s~~t~~~~~~~~~~~~~~~~w~~~ 129 (577)
T KOG0642|consen 102 VADNSEVTGNTLAAANTLENAILLWKQG 129 (577)
T ss_pred chhcCccccccccccccccchHHHHHHH
Confidence 5666667777888888887665554443
Done!