Query 004901
Match_columns 724
No_of_seqs 523 out of 2409
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 09:16:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 100.0 1E-40 3.5E-45 339.0 15.9 202 155-375 9-214 (214)
2 3msx_B RHO GTPase-activating p 100.0 8.7E-41 3E-45 336.2 15.0 196 159-372 6-201 (201)
3 2ee4_A RHO GTPase activating p 100.0 1.5E-40 5E-45 336.7 15.1 198 161-377 8-207 (209)
4 3iug_A RHO/CDC42/RAC GTPase-ac 100.0 4.3E-40 1.5E-44 337.8 15.5 208 155-376 11-223 (229)
5 1tx4_A P50-rhogap; complex (GT 100.0 7.8E-40 2.7E-44 328.6 14.8 193 159-372 2-198 (198)
6 1f7c_A Rhogap protein; GTPase 100.0 6.4E-40 2.2E-44 337.0 13.0 194 164-376 17-220 (231)
7 2osa_A N-chimaerin; RHO-GAP, G 100.0 2.5E-39 8.5E-44 326.0 17.0 192 163-372 6-202 (202)
8 3fk2_A Glucocorticoid receptor 100.0 1.4E-39 4.8E-44 337.5 14.7 196 160-374 48-245 (246)
9 1ow3_A RHO-GTPase-activating p 100.0 8.3E-39 2.8E-43 330.9 14.8 197 159-376 38-238 (242)
10 1pbw_A Rhogap domain, phosphat 100.0 1.3E-38 4.5E-43 324.1 10.9 191 163-376 5-202 (216)
11 3kuq_A RHO GTPase-activating p 100.0 1.4E-37 4.7E-42 319.0 16.4 209 161-371 16-228 (228)
12 2ovj_A Mgcracgap, RAC GTPase-a 100.0 1.4E-36 4.9E-41 305.8 17.5 190 168-374 4-196 (201)
13 3eap_A RHO GTPase-activating p 100.0 2E-36 6.8E-41 318.1 14.2 200 159-376 58-261 (271)
14 3cxl_A N-chimerin; SH2, RHO-GA 100.0 4.7E-35 1.6E-39 329.4 15.0 192 163-372 267-463 (463)
15 2xs6_A Phosphatidylinositol 3- 100.0 3E-36 1E-40 306.1 3.2 192 162-376 19-213 (214)
16 3qis_A Inositol polyphosphate 100.0 2.9E-31 9.8E-36 290.0 15.1 141 179-327 198-338 (366)
17 1wi1_A Calcium-dependent activ 99.7 3E-17 1E-21 152.0 10.7 104 15-127 4-112 (126)
18 1v88_A Oxysterol binding prote 99.7 7.4E-17 2.5E-21 151.1 12.8 103 15-129 4-128 (130)
19 1x1f_A Signal-transducing adap 99.7 1.2E-16 4.2E-21 153.1 14.1 93 19-125 18-113 (149)
20 2rsg_A Collagen type IV alpha- 99.7 2.1E-16 7.2E-21 138.3 8.9 92 19-123 1-92 (94)
21 1v89_A Hypothetical protein KI 99.7 9.3E-16 3.2E-20 138.7 13.4 104 15-129 4-116 (118)
22 1dyn_A Dynamin; signal transdu 99.7 6.4E-16 2.2E-20 141.8 12.2 100 18-123 11-115 (125)
23 1pls_A Pleckstrin homology dom 99.6 9.3E-16 3.2E-20 138.5 12.8 98 17-127 3-103 (113)
24 1wgq_A FYVE, rhogef and PH dom 99.6 4.8E-16 1.6E-20 139.6 10.6 102 15-129 4-107 (109)
25 2da0_A 130-kDa phosphatidylino 99.6 1E-15 3.5E-20 139.1 12.5 101 12-128 3-104 (114)
26 1v5u_A SBF1, SET binding facto 99.6 5.8E-16 2E-20 140.2 10.7 102 14-129 3-115 (117)
27 2p0d_A RHO GTPase-activating p 99.6 6.3E-16 2.1E-20 144.3 11.1 112 14-127 7-126 (129)
28 2d9v_A Pleckstrin homology dom 99.6 2.4E-15 8.2E-20 140.1 14.7 109 14-126 3-115 (130)
29 2dhk_A TBC1 domain family memb 99.6 1.1E-15 3.8E-20 140.0 11.6 98 15-126 4-105 (119)
30 2lul_A Tyrosine-protein kinase 99.6 2.4E-15 8.2E-20 146.2 14.5 106 13-129 9-125 (164)
31 2cod_A Centaurin-delta 1; ARF 99.6 1.8E-15 6.1E-20 137.2 12.5 97 14-126 3-100 (115)
32 2w2x_D 1-phosphatidylinositol- 99.6 1.6E-16 5.3E-21 147.3 5.4 108 14-127 7-121 (124)
33 2i5f_A Pleckstrin; PH domain, 99.6 3.2E-15 1.1E-19 133.6 13.7 97 15-124 3-108 (109)
34 1v5p_A Pleckstrin homology dom 99.6 1.9E-15 6.4E-20 140.8 12.3 104 15-128 11-123 (126)
35 1fgy_A GRP1; PH domain, signal 99.6 2.6E-15 9E-20 137.7 13.1 102 17-129 3-124 (127)
36 2dn6_A KIAA0640 protein; PH do 99.6 2.8E-15 9.6E-20 135.3 12.9 99 14-126 3-104 (115)
37 1unq_A RAC-alpha serine/threon 99.6 1.3E-15 4.5E-20 140.1 9.8 108 15-128 4-113 (125)
38 3cxb_B Pleckstrin homology dom 99.6 3.8E-15 1.3E-19 135.5 12.5 95 20-126 1-102 (112)
39 1fao_A Dual adaptor of phospho 99.6 3.7E-15 1.3E-19 137.1 12.6 100 14-127 13-114 (126)
40 1x05_A Pleckstrin; PH domain, 99.6 6.8E-15 2.3E-19 135.9 14.4 100 14-126 13-121 (129)
41 1eaz_A Tandem PH domain contai 99.6 2.9E-15 1E-19 137.2 11.7 100 14-127 9-113 (125)
42 1x1g_A Pleckstrin 2; PH domain 99.6 7.7E-15 2.6E-19 135.4 13.8 100 14-126 13-125 (129)
43 4a6h_A Phosphatidylinositol 4, 99.6 4.5E-15 1.5E-19 137.2 11.7 100 19-124 6-117 (120)
44 2dkp_A Pleckstrin homology dom 99.6 1.2E-14 4E-19 133.8 14.2 99 14-125 16-119 (128)
45 1btk_A Bruton'S tyrosine kinas 99.6 3.1E-15 1.1E-19 146.2 10.5 104 18-129 2-136 (169)
46 2yry_A Pleckstrin homology dom 99.6 2.3E-14 7.9E-19 130.8 15.6 98 15-125 18-120 (122)
47 1u5d_A SKAP55, SRC kinase-asso 99.6 7.2E-15 2.5E-19 130.6 11.9 98 18-126 2-106 (108)
48 2cof_A Protein KIAA1914; PH do 99.6 3.1E-15 1.1E-19 134.3 9.0 99 15-126 4-102 (107)
49 1wjm_A Beta-spectrin III; PH d 99.6 2.8E-15 9.6E-20 137.8 8.9 108 15-129 4-121 (123)
50 2coc_A FYVE, rhogef and PH dom 99.6 7.2E-15 2.5E-19 134.2 11.5 99 17-126 6-107 (112)
51 2d9x_A Oxysterol binding prote 99.6 3.4E-15 1.2E-19 136.8 9.1 100 15-126 4-105 (120)
52 1upq_A PEPP1; PH domain, phosp 99.6 1.8E-14 6E-19 131.7 13.3 102 15-125 7-109 (123)
53 2y7b_A Actin-binding protein a 99.6 3.8E-15 1.3E-19 138.4 8.8 100 17-125 3-128 (134)
54 3rcp_A Pleckstrin homology dom 99.6 7.2E-15 2.5E-19 130.4 9.9 95 21-127 1-95 (103)
55 3pp2_A RHO GTPase-activating p 99.6 1.1E-14 3.6E-19 135.0 11.3 109 15-125 4-123 (124)
56 1wg7_A Dedicator of cytokinesi 99.6 6.9E-15 2.4E-19 139.7 10.1 101 14-127 13-126 (150)
57 2j59_M RHO-GTPase activating p 99.6 1.1E-14 3.8E-19 141.2 11.5 103 18-127 2-113 (168)
58 2rlo_A Centaurin-gamma 1; spli 99.6 1.7E-14 5.9E-19 133.8 11.9 105 18-126 3-125 (128)
59 2d9y_A Pleckstrin homology dom 99.6 2.2E-14 7.6E-19 129.7 12.3 98 15-125 7-109 (117)
60 3aj4_A Pleckstrin homology dom 99.5 8.1E-15 2.8E-19 132.1 9.0 103 17-125 3-111 (112)
61 1u5f_A SRC-associated adaptor 99.5 3.1E-14 1.1E-18 135.1 13.0 101 15-126 13-120 (148)
62 1dro_A Beta-spectrin; cytoskel 99.5 6E-15 2.1E-19 135.7 7.7 110 15-127 4-121 (122)
63 1u5e_A SRC-associated adaptor 99.5 3.4E-14 1.2E-18 143.7 12.4 99 17-126 104-209 (211)
64 1btn_A Beta-spectrin; signal t 99.5 4.8E-14 1.6E-18 125.3 10.1 96 21-123 1-106 (106)
65 3a8p_A T-lymphoma invasion and 99.5 4.6E-14 1.6E-18 147.4 10.7 110 14-128 6-127 (263)
66 4h8s_A DCC-interacting protein 99.5 6.3E-14 2.2E-18 154.9 11.1 104 14-127 296-400 (407)
67 3tfm_A Myosin X; split PH doma 99.5 9.9E-14 3.4E-18 141.8 11.4 100 15-128 54-158 (228)
68 2dtc_A RAL guanine nucleotide 99.5 5.1E-13 1.7E-17 124.1 13.1 107 20-127 2-114 (126)
69 2q13_A DCC-interacting protein 99.4 1.9E-13 6.4E-18 150.0 11.0 100 16-127 275-377 (385)
70 2r09_A Cytohesin-3; autoinhibi 99.4 3.9E-13 1.3E-17 145.7 12.2 102 18-130 212-333 (347)
71 3lju_X ARF-GAP with dual PH do 99.4 5.2E-13 1.8E-17 146.7 12.7 98 15-126 265-373 (386)
72 1qqg_A IRS-1, insulin receptor 99.4 3.9E-13 1.3E-17 140.4 9.0 102 13-127 4-114 (264)
73 3tca_A Amyloid beta A4 precurs 99.4 7.6E-13 2.6E-17 138.8 10.4 105 18-125 167-276 (291)
74 2fjl_A 1-phosphatidylinositol- 99.3 8.6E-12 2.9E-16 118.4 11.9 105 20-126 2-149 (150)
75 2rov_A RHO-associated protein 99.3 3.4E-12 1.2E-16 117.3 7.8 99 21-125 3-115 (117)
76 3lju_X ARF-GAP with dual PH do 99.3 9.8E-12 3.4E-16 136.6 9.8 95 19-124 146-245 (386)
77 2ys3_A UNC-112-related protein 99.2 3.2E-11 1.1E-15 112.5 10.9 99 18-124 8-111 (137)
78 4ejn_A RAC-alpha serine/threon 99.2 3.5E-11 1.2E-15 133.6 10.2 104 17-126 4-109 (446)
79 3a8n_A TIAM-1, T-lymphoma inva 99.2 1.9E-11 6.4E-16 128.1 6.5 107 14-125 6-124 (279)
80 3hk0_A Growth factor receptor- 99.1 3.3E-10 1.1E-14 117.4 12.0 107 16-125 129-240 (256)
81 2d9w_A Docking protein 2; PH d 99.1 1E-09 3.6E-14 100.6 11.9 103 14-125 7-121 (127)
82 4gmv_A RAS-associated and plec 99.0 6.8E-10 2.3E-14 116.4 10.6 106 17-125 156-266 (281)
83 4bbk_A Kindlin-1, fermitin fam 99.0 1.6E-09 5.6E-14 102.4 9.7 102 19-125 26-129 (165)
84 4f7h_A Fermitin family homolog 99.0 2.2E-09 7.4E-14 102.7 10.0 102 19-125 47-150 (173)
85 1w1g_A HPDK1, 3-phosphoinositi 98.9 2.4E-09 8.1E-14 101.6 10.0 94 14-126 47-140 (151)
86 2coa_A Protein kinase C, D2 ty 98.6 1.8E-07 6.2E-12 85.7 9.8 98 14-125 3-119 (125)
87 2d9z_A Protein kinase C, NU ty 98.5 6.8E-07 2.3E-11 82.1 11.8 98 14-125 3-123 (129)
88 1v5m_A SH2 and PH domain-conta 97.7 0.00063 2.1E-08 62.7 13.7 106 14-126 13-131 (136)
89 3tfm_A Myosin X; split PH doma 97.7 7.1E-05 2.4E-09 76.0 7.8 41 16-58 18-58 (228)
90 2lg1_A A-kinase anchor protein 97.4 0.00059 2E-08 67.2 9.8 104 17-128 69-175 (185)
91 3ml4_A Protein DOK-7; tyrosine 97.2 0.00094 3.2E-08 66.9 8.8 99 17-125 7-113 (224)
92 1v61_A RAC/CDC42 guanine nucle 97.0 0.0064 2.2E-07 56.6 11.9 86 37-128 44-129 (132)
93 3p6a_A RHO guanine nucleotide 96.9 0.0045 1.6E-07 66.8 12.2 104 16-127 256-373 (377)
94 3odw_A RHO guanine nucleotide 96.8 0.0041 1.4E-07 70.9 11.1 106 16-129 409-528 (536)
95 3t06_A PDZ-rhogef, RHO guanine 96.8 0.0061 2.1E-07 66.9 11.8 105 16-128 292-411 (418)
96 1zc3_B Exocyst complex protein 96.5 0.022 7.5E-07 51.5 11.7 102 15-125 4-107 (113)
97 3mpx_A FYVE, rhogef and PH dom 96.4 0.011 3.9E-07 64.9 11.1 100 14-126 239-338 (434)
98 1xcg_A PDZ-rhogef, RHO guanine 96.4 0.02 6.8E-07 61.5 12.6 104 16-127 250-368 (368)
99 1txd_A RHO guanine nucleotide 96.3 0.01 3.6E-07 64.3 9.6 105 16-128 254-372 (385)
100 1nty_A Triple functional domai 96.2 0.038 1.3E-06 58.1 13.1 102 18-126 202-309 (311)
101 2rgn_B RHOA/RAC/CDC42 exchange 95.9 0.046 1.6E-06 58.6 12.2 109 17-126 205-319 (354)
102 1dbh_A Protein (human SOS 1); 95.9 0.051 1.7E-06 58.1 12.5 103 15-126 243-350 (354)
103 3qwm_A Iqsec1, IQ motif and SE 95.9 0.059 2E-06 50.5 11.0 104 18-125 12-122 (140)
104 2dfk_A Collybistin II; DH doma 95.7 0.094 3.2E-06 57.3 13.7 110 15-127 253-365 (402)
105 3zvr_A Dynamin-1; hydrolase, D 95.6 0.06 2.1E-06 63.7 12.6 99 19-123 540-643 (772)
106 2pz1_A RHO guanine nucleotide 95.5 0.088 3E-06 58.5 12.9 104 16-127 331-442 (466)
107 1kz7_A Guanine nucleotide exch 95.4 0.16 5.4E-06 54.4 14.1 109 17-127 208-327 (353)
108 1mai_A Phospholipase C delta-1 95.3 0.095 3.2E-06 48.3 10.4 40 87-127 84-123 (131)
109 2vrw_B P95VAV, VAV1, proto-onc 95.3 0.13 4.5E-06 56.0 13.2 104 18-127 233-337 (406)
110 3o0z_A RHO-associated protein 94.8 0.83 2.8E-05 43.8 15.3 87 618-704 59-160 (168)
111 2z0q_A XPLN, RHO guanine nucle 94.5 0.16 5.3E-06 54.1 10.8 99 16-124 229-345 (346)
112 3ol1_A Vimentin; structural ge 94.4 0.36 1.2E-05 43.9 11.4 38 587-624 18-55 (119)
113 3ky9_A Proto-oncogene VAV; cal 94.3 0.15 5E-06 58.6 10.6 104 18-127 405-509 (587)
114 3jzy_A Intersectin 2; C2 domai 93.6 0.013 4.4E-07 65.7 0.0 99 17-127 251-364 (510)
115 3ksy_A SOS-1, SON of sevenless 92.8 0.24 8.1E-06 60.8 9.5 101 16-127 441-548 (1049)
116 3v5w_A G-protein coupled recep 92.2 0.47 1.6E-05 55.5 10.5 97 14-125 554-652 (689)
117 3swk_A Vimentin; cytoskeleton, 92.0 1.3 4.4E-05 37.9 10.4 80 592-699 3-82 (86)
118 2ke4_A CDC42-interacting prote 91.5 0.62 2.1E-05 40.9 8.0 75 620-694 14-90 (98)
119 2dfs_A Myosin-5A; myosin-V, in 91.4 1.4 4.7E-05 54.2 13.9 101 583-697 922-1047(1080)
120 2fxo_A Myosin heavy chain, car 90.9 3.3 0.00011 37.9 12.8 31 613-643 33-63 (129)
121 2dfs_A Myosin-5A; myosin-V, in 90.8 0.71 2.4E-05 56.8 10.5 54 624-691 956-1009(1080)
122 1foe_A T-lymphoma invasion and 90.8 1.4 4.8E-05 47.2 11.9 89 35-125 257-366 (377)
123 2eqb_B RAB guanine nucleotide 86.4 5.7 0.0002 34.6 10.2 35 618-652 16-50 (97)
124 3oja_B Anopheles plasmodium-re 86.1 6.1 0.00021 44.7 13.7 30 669-698 533-562 (597)
125 3mq9_A Bone marrow stromal ant 84.2 2.9 0.0001 46.1 9.5 77 618-700 394-470 (471)
126 2v71_A Nuclear distribution pr 81.7 2.6 8.9E-05 41.2 6.8 34 664-697 135-178 (189)
127 3na7_A HP0958; flagellar bioge 80.5 31 0.0011 34.9 14.9 67 623-697 55-121 (256)
128 1z87_A Alpha-1-syntrophin; pro 76.4 4 0.00014 42.0 6.7 38 86-125 224-262 (263)
129 3oja_B Anopheles plasmodium-re 72.9 25 0.00085 39.6 12.9 34 584-617 458-491 (597)
130 3na7_A HP0958; flagellar bioge 72.0 78 0.0027 31.9 15.1 24 670-693 147-170 (256)
131 1gmj_A ATPase inhibitor; coile 71.5 32 0.0011 29.2 9.7 56 612-694 22-79 (84)
132 2ocy_A RAB guanine nucleotide 71.3 38 0.0013 32.0 11.3 34 619-652 49-82 (154)
133 1m1j_C Fibrinogen gamma chain; 70.8 34 0.0012 37.3 12.6 85 608-694 25-112 (409)
134 2w6b_A RHO guanine nucleotide 70.5 9.1 0.00031 29.7 5.6 35 618-652 14-48 (56)
135 2fxo_A Myosin heavy chain, car 70.1 64 0.0022 29.2 13.5 84 582-693 41-124 (129)
136 1kd8_B GABH BLL, GCN4 acid bas 69.8 6.9 0.00023 27.7 4.3 28 612-639 6-33 (36)
137 3c3f_A Alpha/beta peptide with 68.8 6.4 0.00022 27.4 4.0 28 611-638 5-32 (34)
138 1m1j_B Fibrinogen beta chain; 68.6 75 0.0026 35.2 14.8 31 607-637 125-155 (464)
139 1kd8_A GABH AIV, GCN4 acid bas 68.4 7.7 0.00026 27.4 4.3 27 612-638 6-32 (36)
140 3ol1_A Vimentin; structural ge 67.7 59 0.002 29.1 11.5 29 621-649 62-90 (119)
141 3c3g_A Alpha/beta peptide with 67.6 7 0.00024 27.1 4.0 28 611-638 4-31 (33)
142 3m48_A General control protein 67.3 6.7 0.00023 27.3 3.8 28 611-638 4-31 (33)
143 1i84_S Smooth muscle myosin he 67.2 8.2 0.00028 47.9 7.6 34 618-651 917-950 (1184)
144 2oxj_A Hybrid alpha/beta pepti 65.5 11 0.00037 26.4 4.5 28 611-638 5-32 (34)
145 2p22_A Suppressor protein STP2 65.5 99 0.0034 29.7 13.9 110 580-689 10-138 (174)
146 3he5_A Synzip1; heterodimeric 64.4 22 0.00077 25.8 6.3 16 675-690 33-48 (49)
147 1uo4_A General control protein 64.4 9.1 0.00031 26.8 4.0 28 611-638 5-32 (34)
148 2hy6_A General control protein 63.1 12 0.00039 26.2 4.3 26 612-637 6-31 (34)
149 3ghg_A Fibrinogen alpha chain; 62.8 7.5 0.00025 43.3 5.3 25 625-649 114-138 (562)
150 2e7s_A RAB guanine nucleotide 62.1 15 0.00051 33.9 6.4 28 624-651 42-69 (135)
151 3hie_A Protein PSL1, exocyst c 61.6 35 0.0012 32.7 9.2 82 36-126 63-149 (171)
152 2wq1_A General control protein 61.0 13 0.00046 25.7 4.3 26 612-637 5-30 (33)
153 3v6i_B V-type ATP synthase, su 60.8 34 0.0012 29.9 8.0 58 580-637 15-73 (105)
154 4dzn_A Coiled-coil peptide CC- 60.5 17 0.0006 24.3 4.7 24 674-697 3-26 (33)
155 1fho_A UNC-89; pleckstrin homo 60.5 12 0.0004 33.8 5.4 98 19-124 10-111 (119)
156 2adz_A Alpha-1-syntrophin; pro 59.1 11 0.00038 36.5 5.3 38 87-125 140-177 (178)
157 3thf_A Protein shroom; coiled- 58.3 84 0.0029 30.5 11.2 113 583-698 20-187 (190)
158 3tnu_A Keratin, type I cytoske 58.1 57 0.002 29.6 9.8 61 626-699 43-103 (131)
159 3ra3_B P2F; coiled coil domain 57.4 8 0.00027 25.1 2.6 21 667-687 8-28 (28)
160 1g6u_A Domain swapped dimer; d 57.1 15 0.00052 26.6 4.3 25 673-697 20-44 (48)
161 1x79_B RAB GTPase binding effe 56.4 1.1E+02 0.0038 27.3 11.1 69 620-694 5-73 (112)
162 1ses_A Seryl-tRNA synthetase; 56.1 49 0.0017 36.1 10.5 68 625-701 32-99 (421)
163 2bni_A General control protein 56.0 14 0.00047 25.9 3.8 27 612-638 6-32 (34)
164 1kd8_A GABH AIV, GCN4 acid bas 56.0 18 0.0006 25.6 4.3 28 664-691 6-33 (36)
165 3a7p_A Autophagy protein 16; c 55.5 1.2E+02 0.0042 28.4 11.5 113 566-701 18-138 (152)
166 3o0z_A RHO-associated protein 55.4 44 0.0015 32.0 8.6 34 618-651 38-71 (168)
167 1wt6_A Myotonin-protein kinase 55.3 37 0.0013 28.5 7.0 50 590-639 11-70 (81)
168 3a58_A Exocyst complex compone 54.2 40 0.0014 35.1 8.7 84 34-126 131-219 (320)
169 3swy_A Cyclic nucleotide-gated 52.6 32 0.0011 25.9 5.7 40 579-618 2-41 (46)
170 1cxz_B Protein (PKN); protein- 52.5 74 0.0025 27.1 8.6 55 626-698 23-81 (86)
171 1fmh_A General control protein 52.4 24 0.00083 23.6 4.4 14 622-635 16-29 (33)
172 2l5g_B Putative uncharacterize 51.6 28 0.00095 25.6 5.0 30 670-699 6-35 (42)
173 1kd8_B GABH BLL, GCN4 acid bas 50.9 28 0.00095 24.6 4.7 27 665-691 7-33 (36)
174 3mq9_A Bone marrow stromal ant 50.5 1.5E+02 0.0051 32.2 13.5 69 605-693 399-470 (471)
175 2wq1_A General control protein 49.4 23 0.00079 24.6 4.0 25 664-688 5-29 (33)
176 3lay_A Zinc resistance-associa 49.1 1.1E+02 0.0037 29.4 10.4 74 613-699 70-143 (175)
177 3k29_A Putative uncharacterize 48.9 1.8E+02 0.0062 27.6 12.2 77 612-701 18-106 (169)
178 3he4_A Synzip6; heterodimeric 48.9 7.2 0.00025 29.1 1.6 42 592-637 6-47 (56)
179 3tnu_B Keratin, type II cytosk 48.4 99 0.0034 27.9 9.7 61 626-699 41-101 (129)
180 1cxz_B Protein (PKN); protein- 47.4 39 0.0013 28.8 6.1 26 578-603 14-39 (86)
181 2dq3_A Seryl-tRNA synthetase; 46.7 79 0.0027 34.5 10.3 71 621-693 30-102 (425)
182 3m48_A General control protein 46.6 23 0.00078 24.7 3.6 24 664-687 5-28 (33)
183 1f5n_A Interferon-induced guan 46.1 96 0.0033 35.4 11.2 44 599-642 467-515 (592)
184 3bas_A Myosin heavy chain, str 46.1 51 0.0017 28.0 6.8 26 612-637 61-86 (89)
185 1uii_A Geminin; human, DNA rep 46.0 32 0.0011 29.0 5.3 28 669-696 49-76 (83)
186 3ghg_C Fibrinogen gamma chain; 45.7 1.5E+02 0.005 32.3 12.0 88 608-697 25-115 (411)
187 2w83_C C-JUN-amino-terminal ki 45.1 27 0.00091 29.0 4.6 49 586-638 27-75 (77)
188 2dq0_A Seryl-tRNA synthetase; 44.3 88 0.003 34.5 10.3 35 667-701 70-104 (455)
189 3ibp_A Chromosome partition pr 44.2 1E+02 0.0035 32.0 9.8 65 609-673 12-76 (302)
190 1fmh_A General control protein 43.8 49 0.0017 22.2 4.8 25 669-693 4-28 (33)
191 4etp_A Kinesin-like protein KA 43.8 21 0.0007 38.9 5.0 43 612-654 15-57 (403)
192 1i84_S Smooth muscle myosin he 43.0 33 0.0011 42.5 7.3 12 288-299 436-447 (1184)
193 1uo4_A General control protein 42.9 28 0.00095 24.4 3.6 24 664-687 6-29 (34)
194 3qne_A Seryl-tRNA synthetase, 42.5 45 0.0016 37.2 7.6 34 668-701 73-106 (485)
195 3edu_A Beta-I spectrin, spectr 42.5 1.5E+02 0.005 28.5 10.6 121 580-700 36-174 (218)
196 3c3f_A Alpha/beta peptide with 41.8 30 0.001 24.1 3.6 25 664-688 6-30 (34)
197 2pnv_A Small conductance calci 41.7 46 0.0016 24.7 5.0 31 608-638 10-40 (43)
198 1quu_A Human skeletal muscle a 40.9 2.7E+02 0.0091 27.2 14.2 121 578-698 48-197 (250)
199 3qr0_A Phospholipase C-beta (P 40.7 64 0.0022 38.4 8.9 37 89-125 104-142 (816)
200 3lbx_B Beta-I spectrin, spectr 40.0 1.5E+02 0.0052 27.7 10.1 113 581-694 40-171 (185)
201 1l8d_A DNA double-strand break 39.9 1.8E+02 0.006 25.1 9.7 25 614-638 17-41 (112)
202 1fxk_A Prefoldin; archaeal pro 39.9 1.3E+02 0.0044 25.7 8.7 84 618-701 12-100 (107)
203 1c1g_A Tropomyosin; contractIl 38.3 2.7E+02 0.0092 26.5 15.2 105 581-702 47-154 (284)
204 2xus_A Breast cancer metastasi 37.8 31 0.0011 26.3 3.6 22 681-702 14-35 (49)
205 1urf_A Protein kinase C-like 1 37.5 77 0.0026 26.6 6.3 67 627-704 7-74 (81)
206 3oja_A Leucine-rich immune mol 37.1 1.3E+02 0.0045 32.7 10.4 31 612-642 358-388 (487)
207 2zqm_A Prefoldin beta subunit 36.7 1.2E+02 0.0043 26.2 8.2 31 618-648 17-47 (117)
208 3swf_A CGMP-gated cation chann 36.1 62 0.0021 26.8 5.4 36 580-615 5-40 (74)
209 2z5i_A TM, general control pro 35.8 53 0.0018 25.2 4.7 28 676-703 8-35 (52)
210 2v71_A Nuclear distribution pr 35.6 2.8E+02 0.0096 26.9 11.0 22 675-696 90-111 (189)
211 3ra3_A P1C; coiled coil domain 35.3 46 0.0016 21.6 3.5 20 674-693 8-27 (28)
212 4f61_I Stathmin-like domain R4 34.8 83 0.0028 31.7 7.2 50 599-648 127-187 (240)
213 3ra3_A P1C; coiled coil domain 34.7 18 0.00063 23.4 1.6 24 674-697 1-24 (28)
214 2v4h_A NF-kappa-B essential mo 34.7 1.2E+02 0.004 27.0 7.3 46 593-638 49-107 (110)
215 2r2v_A GCN4 leucine zipper; co 34.7 62 0.0021 22.6 4.3 26 612-637 6-31 (34)
216 3s4r_A Vimentin; alpha-helix, 34.2 2.2E+02 0.0074 24.3 9.0 24 672-695 69-92 (93)
217 2yy0_A C-MYC-binding protein; 33.9 57 0.0019 25.1 4.7 35 664-698 17-51 (53)
218 4dzn_A Coiled-coil peptide CC- 33.8 85 0.0029 21.0 4.7 27 668-694 4-30 (33)
219 3lss_A Seryl-tRNA synthetase; 33.8 96 0.0033 34.5 8.4 35 667-701 100-139 (484)
220 3mq7_A Bone marrow stromal ant 33.3 57 0.0019 29.2 5.1 31 608-638 58-88 (121)
221 3ulb_A Target of rapamycin com 33.3 2.6E+02 0.0088 25.2 9.5 83 38-125 28-114 (121)
222 4emc_A Monopolin complex subun 33.2 1.2E+02 0.004 29.5 7.7 16 623-638 22-37 (190)
223 3pk1_B Apoptosis regulator BAX 32.8 20 0.00067 25.1 1.6 16 596-611 17-32 (34)
224 3he4_A Synzip6; heterodimeric 32.8 38 0.0013 25.2 3.2 13 675-687 40-52 (56)
225 3c3g_A Alpha/beta peptide with 32.3 53 0.0018 22.8 3.6 24 665-688 6-29 (33)
226 1joc_A EEA1, early endosomal a 31.7 60 0.0021 29.3 5.3 32 668-699 6-37 (125)
227 2lf0_A Uncharacterized protein 31.5 1.7E+02 0.0057 26.3 7.8 52 625-688 7-58 (123)
228 3ghg_A Fibrinogen alpha chain; 31.3 1.8E+02 0.0061 32.6 9.7 59 663-721 121-179 (562)
229 2zkm_X 1-phosphatidylinositol- 30.8 80 0.0028 37.4 7.6 38 89-126 97-136 (799)
230 3ni0_A Bone marrow stromal ant 30.7 72 0.0025 27.5 5.1 35 607-641 50-87 (99)
231 3he5_B Synzip2; heterodimeric 30.7 1.6E+02 0.0054 21.6 6.3 16 671-686 36-51 (52)
232 3u06_A Protein claret segregat 30.1 54 0.0019 35.7 5.6 47 612-658 15-61 (412)
233 3kbt_A Beta-I spectrin, spectr 29.8 4.3E+02 0.015 26.5 12.3 119 580-698 145-281 (326)
234 2wvr_A Geminin; DNA replicatio 29.6 86 0.003 30.7 6.2 19 674-692 123-141 (209)
235 2pnv_A Small conductance calci 29.6 49 0.0017 24.5 3.4 22 676-697 19-40 (43)
236 1wle_A Seryl-tRNA synthetase; 29.1 2.5E+02 0.0087 31.2 10.9 36 666-701 116-151 (501)
237 2oqq_A Transcription factor HY 29.0 81 0.0028 23.1 4.4 27 610-636 6-32 (42)
238 2lw1_A ABC transporter ATP-bin 29.0 52 0.0018 27.8 4.1 26 673-698 22-47 (89)
239 1ci6_A Transcription factor AT 28.7 1.2E+02 0.0042 23.9 6.0 22 617-638 12-33 (63)
240 3hnw_A Uncharacterized protein 28.5 3.4E+02 0.012 24.8 10.7 18 580-600 26-43 (138)
241 2jee_A YIIU; FTSZ, septum, coi 28.1 99 0.0034 26.0 5.5 32 664-695 11-42 (81)
242 1s1c_X RHO-associated, coiled- 27.6 2.2E+02 0.0075 23.3 7.3 50 593-645 3-56 (71)
243 1t2k_D Cyclic-AMP-dependent tr 26.6 1E+02 0.0035 24.0 5.2 21 669-689 39-59 (61)
244 3mq7_A Bone marrow stromal ant 26.5 3.5E+02 0.012 24.2 11.1 29 675-703 73-101 (121)
245 4dac_A Computationally designe 26.3 13 0.00044 24.1 -0.2 15 674-688 9-23 (28)
246 3m0d_C TNF receptor-associated 26.2 1.9E+02 0.0064 23.0 6.7 55 581-635 5-62 (65)
247 1wlq_A Geminin; coiled-coil; 2 26.1 1.4E+02 0.0047 25.2 6.0 28 669-696 41-68 (83)
248 2bni_A General control protein 26.0 78 0.0027 22.2 3.6 24 664-687 6-29 (34)
249 4efa_G V-type proton ATPase su 26.0 3.2E+02 0.011 24.4 9.0 91 594-692 12-102 (119)
250 2oxj_A Hybrid alpha/beta pepti 25.5 81 0.0028 22.0 3.6 23 665-687 7-29 (34)
251 2hy6_A General control protein 24.9 98 0.0034 21.6 4.0 26 664-689 6-31 (34)
252 4g2k_A General control protein 24.9 79 0.0027 28.4 4.5 47 663-709 18-64 (125)
253 1ik9_A DNA repair protein XRCC 24.9 1.7E+02 0.0058 28.9 7.6 30 611-640 183-212 (213)
254 3u1c_A Tropomyosin alpha-1 cha 24.6 3.4E+02 0.011 23.4 11.0 43 603-645 18-62 (101)
255 2jee_A YIIU; FTSZ, septum, coi 23.9 2.9E+02 0.0099 23.1 7.6 62 583-648 14-76 (81)
256 1uix_A RHO-associated kinase; 23.0 2.9E+02 0.0098 22.6 7.2 14 632-645 43-56 (71)
257 1lwu_C Fibrinogen gamma chain; 22.9 1.1E+02 0.0036 32.4 5.9 53 626-695 3-55 (323)
258 3viq_B Mating-type switching p 22.7 64 0.0022 27.4 3.4 30 609-638 3-32 (85)
259 1nkp_B MAX protein, MYC proto- 22.7 1.1E+02 0.0039 25.2 5.0 31 667-697 48-78 (83)
260 3u59_A Tropomyosin beta chain; 22.6 3.6E+02 0.012 23.0 11.0 36 603-638 18-54 (101)
261 3l4f_A RHO guanine nucleotide 22.6 1.7E+02 0.0059 23.2 5.6 35 618-652 11-45 (61)
262 2r2v_A GCN4 leucine zipper; co 22.2 1E+02 0.0035 21.6 3.6 23 665-687 7-29 (34)
263 4dyl_A Tyrosine-protein kinase 22.1 3.2E+02 0.011 29.2 9.9 63 626-698 328-391 (406)
264 2lw1_A ABC transporter ATP-bin 21.6 3.5E+02 0.012 22.5 8.1 29 665-693 55-83 (89)
265 4g1a_A AQ-C16C19 peptide; heli 21.3 44 0.0015 22.3 1.6 17 675-691 2-18 (32)
266 2pms_C Pneumococcal surface pr 21.2 1.6E+02 0.0055 26.7 5.9 33 607-639 48-86 (125)
267 2zqm_A Prefoldin beta subunit 21.1 3.6E+02 0.012 23.1 8.4 29 671-699 82-110 (117)
268 1g8x_A Myosin II heavy chain f 20.9 1.5E+02 0.0053 36.0 7.6 28 608-635 856-883 (1010)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=339.02 Aligned_cols=202 Identities=26% Similarity=0.401 Sum_probs=176.1
Q ss_pred ccCCCCCCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-cCCCC--CCC
Q 004901 155 WRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSA--DED 230 (724)
Q Consensus 155 ~k~k~~~~~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~--~~d 230 (724)
++.++..+..+||+||..++.+ +..||.+|.+|+.||+++|+.+|||||++|+...++.|+..|++|. ..+.. ..|
T Consensus 9 l~~~~~~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~d 88 (214)
T 3byi_A 9 LQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWED 88 (214)
T ss_dssp HHHHTSCCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCS
T ss_pred HHhcCCCcCCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccc
Confidence 3445666788999999999975 5689999999999999999999999999999999999999999986 33322 259
Q ss_pred ccchhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCC
Q 004901 231 AHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMT 310 (724)
Q Consensus 231 ~h~vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt 310 (724)
+|+||++||.|||+||+||||.++|+.|+.+....+..+++..++.+| .+||+.|+.+|+||+.||++|+.|++.|+|+
T Consensus 89 vh~va~lLK~flreLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~s~~NkM~ 167 (214)
T 3byi_A 89 IHVVTGALKMFFRELPEPLFPYSFFEQFVEAIKKQDNNTRIEAVKSLV-QKLPPPNRDTMKVLFGHLTKIVAKASKNLMS 167 (214)
T ss_dssp HHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHTSSSHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHCCC
T ss_pred hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHcccCCCCC
Confidence 999999999999999999999999999999999888899999999966 5999999999999999999999999999999
Q ss_pred ccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 004901 311 PSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDE 375 (724)
Q Consensus 311 ~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~ 375 (724)
+.|||+||||+|+|++.... +. +......+.+|++||+||+.||+++
T Consensus 168 ~~NLa~vf~P~Ll~~~~~~~------------~~------~~~~~~~~~vve~LI~~~~~iF~~d 214 (214)
T 3byi_A 168 TQSLGIVFGPTLLRAENETG------------NM------AIHMVYQNQIAELMLSEYSKIFGSE 214 (214)
T ss_dssp HHHHHHHHHHHHHCCTTSSS------------CH------HHHHHHHHHHHHHHHHTHHHHHC--
T ss_pred HHHhHHHhccccCCCCCccH------------HH------HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999873210 10 1223456789999999999999874
No 2
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=100.00 E-value=8.7e-41 Score=336.16 Aligned_cols=196 Identities=24% Similarity=0.400 Sum_probs=172.7
Q ss_pred CCCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccchhhhH
Q 004901 159 RPVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (724)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (724)
.+.++.+||++|..++++ ++||.+|.+|+.||+++|+.+|||||++|+...++++++.|+.|........|+|+||++|
T Consensus 6 ~~~~~~vFG~~L~~~~~~-~~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~d~~~va~lL 84 (201)
T 3msx_B 6 SPMPGQLFGISLPNICEN-DNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVEVHLDCESIFVIASVL 84 (201)
T ss_dssp ----CCCTTSCHHHHSGG-GCCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCCCCTTSSCHHHHHHHH
T ss_pred CCCCCCeeCCcHHHHhcC-CCCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCCCCCCcccHHHHHHHH
Confidence 445678999999999875 5799999999999999999999999999999999999999999975555678999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhc
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (724)
|.|||+||+||+|.++|+.|+.+....+.++++..++.++ .+||+.|+.+|+||+.||++|+.|++.|+||+.|||+||
T Consensus 85 K~flreLp~pLl~~~l~~~~~~~~~~~~~~~~~~~~~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa~vf 163 (201)
T 3msx_B 85 KDFLRNIPGSIFSSDLYDHWVSVMDQGNDEEKINTVQRLL-DQLPRANVVLLRYLFGVLHNIEQHSSSNQMTAFNLAVCV 163 (201)
T ss_dssp HHHHHTSTTTTTTGGGHHHHHHGGGSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHccccHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccccCCCChhhhhhhh
Confidence 9999999999999999999999999989999999999965 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004901 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (724)
Q Consensus 319 gP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF 372 (724)
||+|||++..... .. .......++.+|++||+||+.||
T Consensus 164 ~P~ll~~~~~~~~--------------~~--~~~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 164 APSILWPPASSSP--------------EL--ENEFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHCCCCTTSCH--------------HH--HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hccccCCCCCCCh--------------HH--HHHHHHHHHHHHHHHHHhhHhhC
Confidence 9999998843211 11 11234556778999999999998
No 3
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=100.00 E-value=1.5e-40 Score=336.65 Aligned_cols=198 Identities=22% Similarity=0.391 Sum_probs=174.7
Q ss_pred CCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcC-CC-CCCCccchhhhH
Q 004901 161 VKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTE-FS-ADEDAHVIGDCV 238 (724)
Q Consensus 161 ~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~-~~-~~~d~h~vA~lL 238 (724)
.+..+||+||..++.....||.+|.+|+.||+++|+.+|||||++|+...++.|++.|++|... +. ...|+|+||++|
T Consensus 8 ~~~~~FG~~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lL 87 (209)
T 2ee4_A 8 WESNYFGMPLQDLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGAL 87 (209)
T ss_dssp SCCSSSSSCHHHHSCSSCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHH
T ss_pred CCCCeeCCcHHHHHhcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHH
Confidence 3467999999999988788999999999999999999999999999999999999999998532 21 247999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhc
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (724)
|.|||+||+||||.++|+.|+.+.+..+..+++..++.+| .+||+.|+.+|+||+.||++|+.+++.|||++.|||+||
T Consensus 88 K~flreLPePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf 166 (209)
T 2ee4_A 88 KAFFADLPDPLIPYSLHPELLEAAKIPDKTERLHALKEIV-KKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICF 166 (209)
T ss_dssp HHHHHHSSSCSSCTTTHHHHHHHHSCSSHHHHHHHHHHHT-TTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHh
Confidence 9999999999999999999999999988899999999955 699999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcc
Q 004901 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDESL 377 (724)
Q Consensus 319 gP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~~ 377 (724)
||+|+|++..+...+.+ +...+.+|++||+||+.||+++.+
T Consensus 167 ~P~L~~~~~~~~~~l~~------------------~~~~~~vve~LI~~~~~iF~~~~~ 207 (209)
T 2ee4_A 167 WPTLMRPDFENREFLST------------------TKIHQSVVETFIQQCQFFFYNGEI 207 (209)
T ss_dssp HHHHSCCCCCSSCCSCC------------------CTTHHHHHHHHHHTHHHHTTCCCC
T ss_pred cccccCCCCccHHHHHH------------------hHHHHHHHHHHHHhhHHHcCCCCC
Confidence 99999987432211111 123568999999999999998763
No 4
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=100.00 E-value=4.3e-40 Score=337.80 Aligned_cols=208 Identities=20% Similarity=0.281 Sum_probs=167.1
Q ss_pred ccCCCCCCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCC----CC
Q 004901 155 WRDKRPVKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSA----DE 229 (724)
Q Consensus 155 ~k~k~~~~~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~----~~ 229 (724)
++++...+.++||+||..++.. +..||.+|.+|+.||+++|+ +|||||++|+...+++|++.|+.|...... ..
T Consensus 11 ~~~~~~~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~ 89 (229)
T 3iug_A 11 RENLYFQGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQ 89 (229)
T ss_dssp -------CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTT
T ss_pred cCCCCCCCCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCcccccccc
Confidence 4555666788999999998875 45799999999999999999 899999999999999999999998643322 25
Q ss_pred CccchhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCC
Q 004901 230 DAHVIGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRM 309 (724)
Q Consensus 230 d~h~vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkM 309 (724)
|+|+||++||.|||+||+||||.++|+.|+.+....+.++++..++.++ .+||+.|+.+|+||+.||++|+.+++.|+|
T Consensus 90 dvh~va~lLK~fLreLPePLl~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM 168 (229)
T 3iug_A 90 DIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVSAATDEERLIKIHDVI-QQLPPPHYRTLEFLMRHLSLLADYCSITNM 168 (229)
T ss_dssp CHHHHHHHHHHHHHHCSSCTTCTTTHHHHHHHHTSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHCC
T ss_pred chHHHHHHHHHHHHHCCCCCcCHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCccCC
Confidence 9999999999999999999999999999999999999999999999966 699999999999999999999999999999
Q ss_pred CccchhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 310 TPSAVAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 310 t~~NLAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
++.|||+||||+|||++..... ... ..+..........+|++||+||+.||+++.
T Consensus 169 ~~~NLAivf~P~Ll~~~~~~~~------~~~------~~~~~~~~~~~~~vve~LI~~~~~iF~~~~ 223 (229)
T 3iug_A 169 HAKNLAIVWAPNLLRSKQIESA------CFS------GTAAFMEVRIQSVVVEFILNHVDVLFSGRI 223 (229)
T ss_dssp CHHHHHHHHHHHHCCC-------------------------------CHHHHHHHHHTHHHHTC---
T ss_pred ChHHHHHHHhccccCCCccccc------ccc------hHHHHHHHHHHHHHHHHHHHhHHHhCCCcH
Confidence 9999999999999998732110 000 011223345567899999999999999876
No 5
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=100.00 E-value=7.8e-40 Score=328.64 Aligned_cols=193 Identities=24% Similarity=0.369 Sum_probs=169.2
Q ss_pred CCCCCcccccchHHHhhhcC---CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-CCCCCCCccch
Q 004901 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVI 234 (724)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~---~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~d~h~v 234 (724)
++.+.++||+||..++++.. .||.+|.+|+.||+++|+.+|||||++|+...++.+++.|++|.. .+....|+|++
T Consensus 2 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~~ 81 (198)
T 1tx4_A 2 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHLP 81 (198)
T ss_dssp -CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchHH
Confidence 35567899999999998743 799999999999999999999999999999999999999999963 33334689999
Q ss_pred hhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccch
Q 004901 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (724)
Q Consensus 235 A~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NL 314 (724)
|++||.|||+||+||+|.++|+.|+.+... +.++++..++.++ .+||+.|+.+|+||+.||++|+.|++.|||++.||
T Consensus 82 a~lLK~flreLpePLi~~~l~~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nL 159 (198)
T 1tx4_A 82 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 159 (198)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHHCCCcCCCHHHHHHHHHHHcC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 999999999999999999999999997764 4578899999955 69999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004901 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (724)
Q Consensus 315 AivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF 372 (724)
|+||||+|+|++.. . ..+.....++.+|++||+||+.||
T Consensus 160 a~vf~P~Ll~~~~~---------------~----~~~~~~~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 160 AVVFGPNLLWAKDA---------------A----ITLKAINPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHHCCCSSH---------------H----HHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred HhhhcccccCCCCc---------------c----ccHHHHHHHHHHHHHHHHhHHHhC
Confidence 99999999998721 0 012334567889999999999998
No 6
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=100.00 E-value=6.4e-40 Score=337.04 Aligned_cols=194 Identities=23% Similarity=0.324 Sum_probs=155.0
Q ss_pred cccccchHHHhhhcC----CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHH-HHhcCC---cCCC--CCCCccc
Q 004901 164 LVVGRPILLALEDID----GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQ-EYEQGK---TEFS--ADEDAHV 233 (724)
Q Consensus 164 ~vFG~pL~~ll~~~~----~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~-~ld~g~---~~~~--~~~d~h~ 233 (724)
+|||+||...+++.. .+|.+|.+|+.||+++|+.+|||||++|+..+|+++++ .+|.|. +.+. ..+|+|+
T Consensus 17 pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~ 96 (231)
T 1f7c_A 17 PVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEIKT 96 (231)
T ss_dssp --------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHCC------CCCCCTTSCHHH
T ss_pred CccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCcHHHHHHHHHHHhCcCCCcccCccccccccHHH
Confidence 389999988887533 36999999999999999999999999999999999987 578763 3332 2479999
Q ss_pred hhhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccc
Q 004901 234 IGDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSA 313 (724)
Q Consensus 234 vA~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~N 313 (724)
||++||.|||+||+||||.++|+.|+.+....+.++++..++.+| .+||++|+.+|+||+.||++|+.|++.|||++.|
T Consensus 97 va~lLK~flReLPePLl~~~ly~~~~~~~~~~~~~~r~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~N 175 (231)
T 1f7c_A 97 ITSALKTYLRMLPGPLMMYQFQRSFIKAAKLENQESRVSEIHSLV-HRLPEKNRQMLHLLMNHLAKVADNHKQNLMTVAN 175 (231)
T ss_dssp HHHHHHHHHHTSSSCTTCHHHHHHHHHHHTCSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 999999999999999999999999999999989999999999965 6999999999999999999999999999999999
Q ss_pred hhhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 314 VAACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 314 LAivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
||+||||+|||++..+... +......+.+|++||+||+.||++.+
T Consensus 176 LAivf~P~Ll~~~~~~~~~------------------~~~~~~~~~vve~LI~~~~~iF~~~~ 220 (231)
T 1f7c_A 176 LGVVFGPTLLRPQEETVAA------------------IMDIKFQNIVIEILIENHEKIFNTVP 220 (231)
T ss_dssp HHHHHHHHHSCC---CCSG------------------GGGHHHHHHHHHHHHHTHHHHHHSCC
T ss_pred HHHHhccccCCCCcccHHH------------------HHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999987422111 11234567899999999999999876
No 7
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.5e-39 Score=325.96 Aligned_cols=192 Identities=18% Similarity=0.333 Sum_probs=170.6
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC-C-cCCC--CCCCccchhhh
Q 004901 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-K-TEFS--ADEDAHVIGDC 237 (724)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~-~~~~--~~~d~h~vA~l 237 (724)
.++||+||..++.+ +..||.+|.+|+.||+++|+.+|||||++|+...++.|++.|++| . .++. ...|+|+||++
T Consensus 6 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~l 85 (202)
T 2osa_A 6 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 85 (202)
T ss_dssp -CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred CCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHHH
Confidence 46999999999976 467999999999999999999999999999999999999999985 3 3333 23699999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhh
Q 004901 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (724)
Q Consensus 238 LK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAiv 317 (724)
||.|||+||+||||.++|+.|+.+....+.++++..++.++ .+||+.|+.+|+||+.||++|+.|++.|||++.|||+|
T Consensus 86 LK~flreLpePLl~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~NLa~v 164 (202)
T 2osa_A 86 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 164 (202)
T ss_dssp HHHHHHTCSSCSSCTTTHHHHHHHHHCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999966 59999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004901 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (724)
Q Consensus 318 fgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF 372 (724)
|||+|+|++... . .+.+......+.+|++||+||+.||
T Consensus 165 f~P~Ll~~~~~~--------------~---~~~~~~~~~~~~vve~LI~~~~~iF 202 (202)
T 2osa_A 165 FGPTLMRSPELD--------------A---MAALNDIRYQRLVVELLIKNEDILF 202 (202)
T ss_dssp HHHHHCCCCCCC--------------H---HHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HccccCCCCCcc--------------H---HHHHHHHHHHHHHHHHHHHcccccC
Confidence 999999987321 1 1223445667899999999999998
No 8
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=337.48 Aligned_cols=196 Identities=23% Similarity=0.449 Sum_probs=174.3
Q ss_pred CCCCcccccchHHHhhhcCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-CCC-CCCCccchhhh
Q 004901 160 PVKSLVVGRPILLALEDIDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFS-ADEDAHVIGDC 237 (724)
Q Consensus 160 ~~~~~vFG~pL~~ll~~~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~-~~~d~h~vA~l 237 (724)
..++.+||+||..++...+.||.+|.+|+.||+++|+.+|||||++|+...++.|++.|+.|.. .+. .++|||+||++
T Consensus 48 ~~~~~vFGv~L~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va~l 127 (246)
T 3fk2_A 48 TWESNYFGVPLTTVVTPEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVAGA 127 (246)
T ss_dssp -CCCSSTTSCGGGGCCSSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHHHH
T ss_pred ccCCCeeCCCHHHHhcCCCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHHHH
Confidence 3456899999999998888999999999999999999999999999999999999999999863 222 24699999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhh
Q 004901 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (724)
Q Consensus 238 LK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAiv 317 (724)
||.|||+||+||||.++|+.|+.+....+.++++..++.+| .+||+.|+.+|+||+.||++|+.+++.|+||+.|||+|
T Consensus 128 LK~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkMt~~NLAiv 206 (246)
T 3fk2_A 128 MKSFFSELPDPLVPYNMQIDLVEAHKINDREQKLHALKEVL-KKFPKENHEVFKYVISHLNKVSHNNKVNLMTSENLSIC 206 (246)
T ss_dssp HHHHHHHSSSCSSCHHHHHHHHHHTTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHH
T ss_pred HHHHHHhCCCccCCHHHHHHHHHHhccCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCccCCchHHhHHH
Confidence 99999999999999999999999999999999999999966 59999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 004901 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (724)
Q Consensus 318 fgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~ 374 (724)
|||+|||+..... ..+..+..++.||++||+||+.||.+
T Consensus 207 f~P~Llrp~~~~~------------------~~~~~~~~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 207 FWPTLMRPDFSTM------------------DALTATRTYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHCCCSSSS------------------CHHHHHHHHHHHHHHHHHTHHHHHC-
T ss_pred hcccccCCCCccH------------------HHHHHHHHHHHHHHHHHHhHHHhcCC
Confidence 9999999763211 11234456779999999999999986
No 9
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=100.00 E-value=8.3e-39 Score=330.95 Aligned_cols=197 Identities=24% Similarity=0.367 Sum_probs=169.3
Q ss_pred CCCCCcccccchHHHhhhcC---CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-CCCCCCCccch
Q 004901 159 RPVKSLVVGRPILLALEDID---GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSADEDAHVI 234 (724)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~~~---~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~~d~h~v 234 (724)
.+.+..+||++|..++.+.. .||.+|.+|+.||+++|+.+|||||++|+...++.|++.|++|.. .+....|+|++
T Consensus 38 ~~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~dv~~v 117 (242)
T 1ow3_A 38 PPLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNELHLP 117 (242)
T ss_dssp -CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHHH
T ss_pred CCCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCCCCcccccchHHH
Confidence 45567899999999997643 799999999999999999999999999999999999999999964 33333599999
Q ss_pred hhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccch
Q 004901 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (724)
Q Consensus 235 A~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NL 314 (724)
|++||.|||+||+||||.++|+.|+.+... +.++++..++.++ .+||+.|+.+|+||+.||++|+.+++.|+|++.||
T Consensus 118 a~lLK~flReLPePLl~~~ly~~~~~~~~~-~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 195 (242)
T 1ow3_A 118 AVILKTFLRELPEPLLTFDLYPHVVGFLNI-DESQRVPATLQVL-QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNL 195 (242)
T ss_dssp HHHHHHHHHHSSSCTTCGGGHHHHHTGGGS-CGGGHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHcC-CHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHh
Confidence 999999999999999999999999997765 4578899999955 69999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 315 AivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
|+||||+|+|++.. . ..+.....++.+|++||+||+.||++..
T Consensus 196 Aivf~P~Ll~~~~~---------------~----~~~~~~~~~~~~v~~LI~~~~~iF~~~~ 238 (242)
T 1ow3_A 196 AVVFGPNLLWAKDA---------------A----ITLKAINPINTFTKFLLDHQGELFPSPD 238 (242)
T ss_dssp HHHHHHHHCCCSSH---------------H----HHHHTHHHHHHHHHHHHHTHHHHC----
T ss_pred HHhhcchhCCCCCc---------------c----ccHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999998721 0 1123345677899999999999998754
No 10
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=100.00 E-value=1.3e-38 Score=324.06 Aligned_cols=191 Identities=20% Similarity=0.257 Sum_probs=158.2
Q ss_pred CcccccchHHHhhhc---CCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC-cCCCCCCCccchhhhH
Q 004901 163 SLVVGRPILLALEDI---DGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK-TEFSADEDAHVIGDCV 238 (724)
Q Consensus 163 ~~vFG~pL~~ll~~~---~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~-~~~~~~~d~h~vA~lL 238 (724)
..+||+||..++++. ..||.+|.+|++||+++|+.+|||||++|+... +.|++.|++|. ......+|+|+||++|
T Consensus 5 ~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~lL 83 (216)
T 1pbw_A 5 VEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADAF 83 (216)
T ss_dssp -------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHHH
T ss_pred cccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHHH
Confidence 458999999999863 579999999999999999999999999999999 99999999984 2333567999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHh-cCCHHHHHHHHHHHHHc--cCChhHHHHHHHHHHHHHHhhcccccCCCCccchh
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYK-IDRKEARISAMRSAILE--TFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVA 315 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~-~~~~~~ri~~l~~lIl~--~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLA 315 (724)
|.|||+||+||||.++|+.|+.+.+ ..+.++++..++.+| . +||+.|+.+|+||+.||++|+.|++.|+|++.|||
T Consensus 84 K~flReLPePLl~~~ly~~~~~~~~~~~~~~~~~~~l~~ll-~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLA 162 (216)
T 1pbw_A 84 KRYLLDLPNPVIPAAVYSEMISLAPEVQSSEEYIQLLKKLI-RSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLS 162 (216)
T ss_dssp HHHHHTSSSCSSCHHHHHHHHHHGGGCCSHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHH
Confidence 9999999999999999999999986 667789999999955 6 89999999999999999999999999999999999
Q ss_pred hhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 316 ACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 316 ivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
+||||+|||++..+ .. . ....+.+|++||+||+.||+..+
T Consensus 163 ivf~P~Ll~~~~~~--------------~~------~-~~~~~~vve~LI~~~~~iF~~~P 202 (216)
T 1pbw_A 163 EIFSPMLFRFSAAS--------------SD------N-TENLIKVIEILISTEWNERQPAP 202 (216)
T ss_dssp HHHHHHHHTCSSCC--------------HH------H-HHHHHHHHHHHHHTTC-------
T ss_pred HHHhhhcCCCCCCc--------------hh------h-hHHHHHHHHHHHhhhHHhcCCCC
Confidence 99999999987321 00 1 15678999999999999999875
No 11
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=319.04 Aligned_cols=209 Identities=22% Similarity=0.331 Sum_probs=167.3
Q ss_pred CCCcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcC-CcCCCCCCCccchhhhH
Q 004901 161 VKSLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQG-KTEFSADEDAHVIGDCV 238 (724)
Q Consensus 161 ~~~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g-~~~~~~~~d~h~vA~lL 238 (724)
..++|||+||..++++ +..||.+|.+|+.||+++|+.+|||||++|+...|+.|++.|+.+ ........|+|+||++|
T Consensus 16 ~~~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~~va~lL 95 (228)
T 3kuq_A 16 FQGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCVNYEGQSAYDVADML 95 (228)
T ss_dssp CTTSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCCCCTTCCHHHHHHHH
T ss_pred CCCCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcCCcccCCHHHHHHHH
Confidence 3467999999999876 567999999999999999999999999999999999999999875 34445678999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhc
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (724)
|.|||+||+||||.++|+.|+.+....+.++++..++.+| .+||+.|+.+|+||+.||++|+.+++.|+||+.|||+||
T Consensus 96 K~fLReLPePLl~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 174 (228)
T 3kuq_A 96 KQYFRDLPEPLMTNKLSETFLQIYQYVPKDQRLQAIKAAI-MLLPDENREVLQTLLYFLSDVTAAVKENQMTPTNLAVCL 174 (228)
T ss_dssp HHHHHHSSSCTTCSSHHHHHHHHHHHSCGGGHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHhccccCCchhHhHHHH
Confidence 9999999999999999999999999888889999999966 599999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCC--CCCcHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 004901 319 APLLLRPLLAGECELEDDFDM--NGDNSAQLLAAANAANNAQAIIATLLEEYENI 371 (724)
Q Consensus 319 gP~Llr~~~~~~~~~ed~~~~--~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~I 371 (724)
||+|||+...... ..++..+ ++.........+....-+..+|.+||+||+.|
T Consensus 175 ~P~Ll~~~~~~~~-s~~~~~~~r~~~~~~~~~~~l~e~~aa~~~l~~mi~~~~~l 228 (228)
T 3kuq_A 175 APSLFHLNTLKRE-NSSPRVMQRKQSLGKPDQKDLNENLAATQGLAHMIAECKKL 228 (228)
T ss_dssp HHHHHTCCCC--------------------CHHHHHHHHHHHHHHHHHHHC----
T ss_pred hhhhcCCCCCCCC-CCCcchhhhccccCCCcHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999998754221 1111100 00000011112333344678999999999875
No 12
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=305.75 Aligned_cols=190 Identities=17% Similarity=0.253 Sum_probs=165.1
Q ss_pred cchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCc-CCCCC-CCccchhhhHHHHHhh
Q 004901 168 RPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKT-EFSAD-EDAHVIGDCVKHVLRE 244 (724)
Q Consensus 168 ~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~-~~~~~-~d~h~vA~lLK~fLRe 244 (724)
..|..++.. ...||.+|.+|+.||+++|+.+|||||++|+...++.|++.|++|.. ..... .|+|+||++||.|||+
T Consensus 4 g~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flre 83 (201)
T 2ovj_A 4 GMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRN 83 (201)
T ss_dssp CCGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHT
T ss_pred CcHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHh
Confidence 346666654 46799999999999999999999999999999999999999999853 33334 4999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccC
Q 004901 245 LPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLR 324 (724)
Q Consensus 245 LPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr 324 (724)
||+||||.++|+.|+.+....+.++++..++.+| .+||+.|+.+|+||+.||++|+.+ +.|||++.|||+||||+|||
T Consensus 84 LpePLi~~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~-~~NkM~~~NLa~vf~P~ll~ 161 (201)
T 2ovj_A 84 LKEPLLTFRLNRAFMEAAEITDEDNSIAAMYQAV-GELPQANRDTLAFLMIHLQRVAQS-PHTKMDVANLAKVFGPTIVA 161 (201)
T ss_dssp SSSCTTCTTTHHHHHHHHHCSSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHHC-TTSCCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHcc-cccCCCHHHHHHHhhhhhcC
Confidence 9999999999999999999999899999999966 699999999999999999999996 68999999999999999999
Q ss_pred CCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 004901 325 PLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDD 374 (724)
Q Consensus 325 ~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~ 374 (724)
++..+. . ..+.+..+..++.||++||+||+.||+.
T Consensus 162 ~~~~~~------------~---~~~~~~~~~~~~~vv~~LI~~~~~if~~ 196 (201)
T 2ovj_A 162 HAVPNP------------D---PVTMLQDIKRQPKVVERLLSLPLEYWSQ 196 (201)
T ss_dssp CSSSSC------------C---HHHHHHHHHHHHHHHHHHHHSCHHHHHG
T ss_pred CCCCCC------------C---HHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 863211 0 1223445677889999999999999986
No 13
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=318.05 Aligned_cols=200 Identities=22% Similarity=0.294 Sum_probs=157.2
Q ss_pred CCCCCcccccchHHHhhh----cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccch
Q 004901 159 RPVKSLVVGRPILLALED----IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVI 234 (724)
Q Consensus 159 ~~~~~~vFG~pL~~ll~~----~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~v 234 (724)
.+.++.+||+||..+++. .+.||.+|.+|+.||++ |+.+|||||++|+...++.|++.||.|... ....|+|+|
T Consensus 58 ~~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~-~~~~~~~~v 135 (271)
T 3eap_A 58 TEIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC-LSSAPPCDI 135 (271)
T ss_dssp ---CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC------CCCHHHH
T ss_pred CCCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC-cccccHHHH
Confidence 345678999999998753 34699999999999975 799999999999999999999999999654 346799999
Q ss_pred hhhHHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccch
Q 004901 235 GDCVKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAV 314 (724)
Q Consensus 235 A~lLK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NL 314 (724)
|++||.|||+||+||||.++|+.|+.+.... .++++..++.+ +..||+.|+.+|+||+.||++|+.+++.|+||+.||
T Consensus 136 a~lLK~fLReLPePLl~~~ly~~~~~~~~~~-~~~~~~~~~~l-~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NL 213 (271)
T 3eap_A 136 AGLLKQFFRELPEPILPADLHEALLKAQQLG-TEEKNKATLLL-SCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNL 213 (271)
T ss_dssp HHHHHHHHHHSSSCSSCGGGHHHHHHHTTSC-HHHHHHHHHHH-HTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHH
T ss_pred HHHHHHHHHhCCcccCCHHHHHHHHHHHHHh-HHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH
Confidence 9999999999999999999999999998774 46678888874 468999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 315 AACMAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 315 AivfgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
|+||||+|||++.... .+. .. ..........+|++||+||+.||....
T Consensus 214 Aivf~P~Ll~~~~~~~-~~~----------~~---~~~~~~~~~~vve~LI~~~~~IF~vp~ 261 (271)
T 3eap_A 214 AVIFAPNLLQTSEGHE-KMS----------SN---TEKKLRLQAAVVQTLIDYASDIGRVPD 261 (271)
T ss_dssp HHHHHHHHHTCCCCCT-TCC----------HH---HHHHHHHHHHHHHHHHHTGGGTTCCCH
T ss_pred HHHHHhHhccCCCCcc-chh----------hh---HHHHHHHHHHHHHHHHHhHHHHhCCCH
Confidence 9999999999874211 111 11 112234567899999999999997654
No 14
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=100.00 E-value=4.7e-35 Score=329.43 Aligned_cols=192 Identities=18% Similarity=0.321 Sum_probs=170.3
Q ss_pred CcccccchHHHhhh-cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCC--cCCC--CCCCccchhhh
Q 004901 163 SLVVGRPILLALED-IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGK--TEFS--ADEDAHVIGDC 237 (724)
Q Consensus 163 ~~vFG~pL~~ll~~-~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~--~~~~--~~~d~h~vA~l 237 (724)
..+||++|..+++. ...||.+|.+|+.+|+++|+.+|||||++|+...|++|+..||++. .++. ...|+|+||++
T Consensus 267 ~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~l 346 (463)
T 3cxl_A 267 KKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITGA 346 (463)
T ss_dssp CCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHHH
T ss_pred ccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhhH
Confidence 57999999999976 5679999999999999999999999999999999999999999853 2332 23699999999
Q ss_pred HHHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhh
Q 004901 238 VKHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAAC 317 (724)
Q Consensus 238 LK~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAiv 317 (724)
||.|||+||+||||.++|+.|+.+....+.++++..++.+| ..||+.|+.+|+||+.||++|+.+++.|+|++.|||+|
T Consensus 347 LK~flReLPePLi~~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAiv 425 (463)
T 3cxl_A 347 LKLYFRDLPIPLITYDAYPKFIESAKIMDPDEQLETLHEAL-KLLPPAHCETLRYLMAHLKRVTLHEKENLMNAENLGIV 425 (463)
T ss_dssp HHHHHHHCSSCSSCTTTHHHHHHHHHCCCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999966 59999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 004901 318 MAPLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIF 372 (724)
Q Consensus 318 fgP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF 372 (724)
|||+||+++..+.. +.+......+.||++||+||+.||
T Consensus 426 f~P~Ll~~~~~~~~-----------------~~~~~~~~~~~vve~LI~~~~~iF 463 (463)
T 3cxl_A 426 FGPTLMRSPELDAM-----------------AALNDIRYQRLVVELLIKNEDILF 463 (463)
T ss_dssp HHHHHCCCCCSCTT-----------------GGGGGHHHHHHHHHHHHHTHHHHC
T ss_pred hhccccCCCCccHH-----------------HHHHHHHHHHHHHHHHHhchhhcC
Confidence 99999998743211 011223456789999999999998
No 15
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=100.00 E-value=3e-36 Score=306.13 Aligned_cols=192 Identities=18% Similarity=0.152 Sum_probs=141.5
Q ss_pred CCcccccchHHHhhh---cCCCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccchhhhH
Q 004901 162 KSLVVGRPILLALED---IDGGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCV 238 (724)
Q Consensus 162 ~~~vFG~pL~~ll~~---~~~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lL 238 (724)
..++||+||..++++ .+.||.+|.+|+.||+++|+.+|||||++|+. +++ .+........|+|+||++|
T Consensus 19 ~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~---~~~~~dl~~~dvh~va~lL 90 (214)
T 2xs6_A 19 YFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT---DWSLSDVDQWDTAALADGI 90 (214)
T ss_dssp ------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC---CCCCTTGGGCCHHHHHHHH
T ss_pred CCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh---ccccCCCccCCHHHHHHHH
Confidence 357999999999883 35799999999999999999999999999998 333 2222223458999999999
Q ss_pred HHHHhhCCCCCCChhhHHHHHHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhc
Q 004901 239 KHVLRELPSSPVPASCCTALLEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACM 318 (724)
Q Consensus 239 K~fLReLPePLlp~~l~~~ll~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivf 318 (724)
|.|||+||+||||.++|+.|+.+....+..+++. . ++.+||+.|+.+|+||+.||++|+.+++.|||++.|||+||
T Consensus 91 K~flReLPePLi~~~ly~~~i~~~~~~~~~~~~~---~-l~~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf 166 (214)
T 2xs6_A 91 KSFLLALPAPLVTPEASAEARRALREAAGPVGPA---L-EPPTLPLHRALTLRFLLQHLGRVARRAPALGPAVRALGATF 166 (214)
T ss_dssp HHHHHHSSSCSSCHHHHHHHHHHHHCC--CCGGG---G-STTTSCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHhcCCHHHHHH---H-HHHHCCHHHHHHHHHHHHHHHHHHHcccccCCCHHHHHHHH
Confidence 9999999999999999999999998765554444 3 55799999999999999999999999999999999999999
Q ss_pred cccccCCCCCCCCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCc
Q 004901 319 APLLLRPLLAGECELEDDFDMNGDNSAQLLAAANAANNAQAIIATLLEEYENIFDDES 376 (724)
Q Consensus 319 gP~Llr~~~~~~~~~ed~~~~~~~~s~q~~a~~~~~~~~~~iVe~LIen~~~IF~~~~ 376 (724)
||+|||++..... .... ....+.+......+.+|++||+| .||+.++
T Consensus 167 ~P~Ll~~~~~~~~---~~~~------~~~~~~~~d~~~~~~vve~LI~n--~ife~d~ 213 (214)
T 2xs6_A 167 GPLLLRAPPPPSS---PPPG------GAPDGSEPSPDFPALLVEKLLQE--HLEEQEV 213 (214)
T ss_dssp HHHHHC---------------------------CCTTHHHHHHHHHHHH--HHHC---
T ss_pred hhhhcCCcccccc---cccc------cchhhhHHhHHHHHHHHHHHHhh--hccccCC
Confidence 9999998842100 0000 00011223345678999999976 4887654
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.97 E-value=2.9e-31 Score=290.01 Aligned_cols=141 Identities=16% Similarity=0.240 Sum_probs=129.6
Q ss_pred CCcHHHHHHHHHHHhcCCCcCCeeecCCCHHHHHHHHHHHhcCCcCCCCCCCccchhhhHHHHHhhCCCCCCChhhHHHH
Q 004901 179 GGPSFLEKALRFLEKFGTKVEGILRQAADVEEVDRRVQEYEQGKTEFSADEDAHVIGDCVKHVLRELPSSPVPASCCTAL 258 (724)
Q Consensus 179 ~VP~il~~~i~~L~~~Gl~~EGIFR~sg~~~~v~~L~~~ld~g~~~~~~~~d~h~vA~lLK~fLReLPePLlp~~l~~~l 258 (724)
.||.+|.+|+.||+++|+.+|||||++|+...++.|++.|+.|..... ..|+|+||++||.|||+||+||||..+|+.|
T Consensus 198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~~~-~~dvh~va~lLK~fLReLPePLi~~~ly~~~ 276 (366)
T 3qis_A 198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPETI-PGSNHSVAEALLIFLEALPEPVICYELYQRC 276 (366)
T ss_dssp SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCSSC-CSCHHHHHHHHHHHHHHCSSCSSCHHHHHHH
T ss_pred CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCCcc-ccCHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 589999999999999999999999999999999999999999965433 3499999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHccCChhHHHHHHHHHHHHHHhhcccccCCCCccchhhhccccccCCCC
Q 004901 259 LEAYKIDRKEARISAMRSAILETFPEPNRRLLQRILRMMHTISSHAHENRMTPSAVAACMAPLLLRPLL 327 (724)
Q Consensus 259 l~~~~~~~~~~ri~~l~~lIl~~LP~~n~~lL~~Ll~~L~~V~~~s~~NkMt~~NLAivfgP~Llr~~~ 327 (724)
+.+... ...++.+| ..||+.|+.+|+||+.||++|+.|++.|+|++.|||+||||+|||++.
T Consensus 277 ~~~~~~------~~~~~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLA~vf~P~Llr~~~ 338 (366)
T 3qis_A 277 LDSAYD------PRICRQVI-SQLPRCHRNVFRYLMAFLRELLKFSEYNSVNANMIATLFTSLLLRPPP 338 (366)
T ss_dssp HHHTTC------HHHHHHHH-HTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHSCCCC
T ss_pred HHHhhh------HHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHhhhcccCCC
Confidence 998764 23466655 599999999999999999999999999999999999999999999984
No 17
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.71 E-value=3e-17 Score=152.04 Aligned_cols=104 Identities=27% Similarity=0.430 Sum_probs=74.6
Q ss_pred CCCceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeEEEEc----CCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcc
Q 004901 15 ASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFK----NDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKL 89 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~-~~k~WKKRWFVL~~~~L~yYK----d~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~ 89 (724)
.+.+..++|||| |+|. .+|.||||||||+++.|+||+ ++.+..|.+ .+.|.++.+..+........+++
T Consensus 4 ~p~n~~~~G~L~--KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~G----~I~L~g~tV~~~~~~~~~~~~k~ 77 (126)
T 1wi1_A 4 GSSGMKHSGYLW--AIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQE----LLQLDGYTVDYTDPQPGLEGGRA 77 (126)
T ss_dssp CCCCEEEEEEEE--EECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCSE----EEECSSCEEEECCCCSSCCSCSS
T ss_pred CCCCCceeEEEE--EeCCCcccccceEEEEEeCCEEEEEEcccccccCCCCce----EEECCCcEEEEecCCcccccCce
Confidence 344679999776 6665 579999999999999999999 777665332 33444444432211111134667
Q ss_pred eEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 90 ~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
+|.+... +++|+|+|++++||+.||.||..|+.++
T Consensus 78 ~F~~v~~---~~ty~~~Adseee~~~WikAi~~A~~~~ 112 (126)
T 1wi1_A 78 FFNAVKE---GDTVIFASDDEQDRILWVQAMYRATGQS 112 (126)
T ss_dssp EEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTCS
T ss_pred EEEEecC---CceEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 8865542 6789999999999999999999999644
No 18
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.70 E-value=7.4e-17 Score=151.13 Aligned_cols=103 Identities=26% Similarity=0.388 Sum_probs=74.8
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEE
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVL 93 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-~~~Kk~~fvi 93 (724)
.+..|+++|||+ |+| ..+.|++|||||+++.|+|||++.+.. +++.|.|..+..... ...++++|.|
T Consensus 4 ~~~~v~k~GwL~--K~g-~~k~WkrRWfVLk~~~L~yyk~~~~~~---------p~G~I~L~~~~v~~~~~~~~~~~F~i 71 (130)
T 1v88_A 4 GSSGIVMADWLK--IRG-TLKSWTKLWCVLKPGVLLIYKTQKNGQ---------WVGTVLLNACEIIERPSKKDGFCFKL 71 (130)
T ss_dssp SSSSCCEEEEEE--ECC-SSSSCEEEEEEEETTEEEEESCSSSCC---------CCEEEECSSCEECCCCTTTSSCEEEE
T ss_pred CCCceEEEeEEE--EeC-CCCCceEEEEEEECCEEEEECCCCCCC---------ceEEEEcCCCEEEECCCCCCCeEEEE
Confidence 456789999665 677 789999999999999999999988755 333444444332211 1234488887
Q ss_pred EecCCC---------------------CceEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 94 FPDGRD---------------------GRAFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 94 t~~~~~---------------------gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
...... .++|+|+|+|++|+++||.||+.|+...|.
T Consensus 72 ~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~~~~ 128 (130)
T 1v88_A 72 FHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSGPS 128 (130)
T ss_dssp ECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTTTTT
T ss_pred EcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhcCCC
Confidence 632210 245999999999999999999999975543
No 19
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.70 E-value=1.2e-16 Score=153.11 Aligned_cols=93 Identities=20% Similarity=0.339 Sum_probs=72.4
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee---ccCCcceEEEEe
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV---REDKKLLTVLFP 95 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~---~~~Kk~~fvit~ 95 (724)
++|+|||+ |+|...+.|++|||||+++.|+|||++.+..+ .+.|+|..+..+.. ...++++|.|..
T Consensus 18 v~keG~L~--Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~~---------~g~I~L~~~~~~~~~~~~~~~~~~F~I~t 86 (149)
T 1x1f_A 18 LYFEGFLL--IKRSGYREYEHYWTELRGTTLFFYTDKKSIIY---------VDKLDIVDLTCLTEQNSTEKNCAKFTLVL 86 (149)
T ss_dssp EEEEEEEE--EECTTCCSCEEEEEEEETTEEEEESCSSCSSC---------SEECCCSSCCEEEECCCTTSCCCEEEEEC
T ss_pred ccEEEEEE--EeCCCCCCceeEEEEEcCCEEEEEeCCCcccc---------CcEEECCCceEEeeccCCCCcCcEEEEEc
Confidence 99999555 78888899999999999999999999887653 33455555443311 122346777654
Q ss_pred cCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 96 DGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 96 ~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
. +++|+|+|+|.+|+++||.+|+.++.
T Consensus 87 ~---~r~~~f~A~s~ee~~eWi~aI~~v~~ 113 (149)
T 1x1f_A 87 P---KEEVQLKTENTESGEEWRGFILTVTE 113 (149)
T ss_dssp S---SCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred C---CCEEEEEcCCHHHHHHHHHHHHHHHc
Confidence 2 68999999999999999999999986
No 20
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=99.65 E-value=2.1e-16 Score=138.34 Aligned_cols=92 Identities=18% Similarity=0.303 Sum_probs=70.1
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCC
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGR 98 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~ 98 (724)
|.|+|||+ |+|...++|++|||||+++.|+||+++.+.... +.+.+.+..+..+ .....+++|.+...
T Consensus 1 V~k~G~L~--K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~-------~~~~i~l~~~~~~-~~~~~~~~F~i~~~-- 68 (94)
T 2rsg_A 1 VERCGVLS--KWTNYIHGWQDRWVVLKNNALSYYKSEDETEYG-------CRGSICLSKAVIT-PHDFDECRFDISVN-- 68 (94)
T ss_dssp CCEEEEEE--EESSSTTCEEEEEEEEETTEEEEESSTTGGGTC-------CSEEEETTTCEEE-ECSSCSSEEEEEET--
T ss_pred CCEEEEEE--EeCCCCCCceEEEEEEECCEEEEEEeccccccc-------ceeeEecceeeee-cCcccceeEEEEeC--
Confidence 57999666 788889999999999999999999987654321 2334555554332 33445567777653
Q ss_pred CCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 99 DGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 99 ~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
+++|+|+|+|++|+++|+.||+.|
T Consensus 69 -~r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 69 -DSVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp -TEEEEEECCSSCCTHHHHHHHHHH
T ss_pred -CeEEEEECCCHHHHHHHHHHHHhh
Confidence 799999999999999999999976
No 21
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.65 E-value=9.3e-16 Score=138.72 Aligned_cols=104 Identities=23% Similarity=0.409 Sum_probs=77.1
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee----ccCCcce
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKLL 90 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~----~~~Kk~~ 90 (724)
....++++|||+ |+|...+.|++|||||+++.|+||+++.+..+ .+.|.|..+..+.. ...++++
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~~~~~ 72 (118)
T 1v89_A 4 GSSGPIKMGWLK--KQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKP---------QGCMYLPGCTIKEIATNPEEAGKFV 72 (118)
T ss_dssp SSSCEEEEEEEE--EECSSSSCEEEEEEEEETTEEEEESSSSCCSC---------SEEECSTTEEEEEECCCSSCCCCCE
T ss_pred CCCCCcEEEEEE--ecCCCCCCccEEEEEEECCEEEEEeCCCCCCc---------eEEEECCCCEEEEcCcCcccCCcce
Confidence 446789999665 67777899999999999999999999876542 23344443332211 2344678
Q ss_pred EEEEecC-----CCCceEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 91 TVLFPDG-----RDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 91 fvit~~~-----~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
|.|.... ..+++|+|+|+|++|+.+|+.+|+.++...|+
T Consensus 73 f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~~~~~~ 116 (118)
T 1v89_A 73 FEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSGPS 116 (118)
T ss_dssp EEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHHHCCSC
T ss_pred EEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHHccCCC
Confidence 8776521 24799999999999999999999999986654
No 22
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=99.65 E-value=6.4e-16 Score=141.84 Aligned_cols=100 Identities=29% Similarity=0.424 Sum_probs=74.5
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecC
Q 004901 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDG 97 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~ 97 (724)
.|+|+|||++...|..+.+||+|||||++.+|+|||+..+.. +...++|.++.+.....- ...++++|.+.+..
T Consensus 11 ~VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke----~~G~IpL~~~~vr~v~~~--~~~rk~~F~l~~~d 84 (125)
T 1dyn_A 11 LVIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEKG--FMSSKHIFALFNTE 84 (125)
T ss_dssp CEEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSC----EEEEEECTTEEEEECCSC--SSSSCEEEEEEETT
T ss_pred ceEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccc----cceEEECCCceEeccCCC--CCCCceEEEEECCC
Confidence 399999666433344333599999999999999999998776 344567777777664331 12577889876532
Q ss_pred -C----CCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 98 -R----DGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 98 -~----~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
+ +.++|.|.|+|.+|+++|+++|.+|
T Consensus 85 ~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra 115 (125)
T 1dyn_A 85 QRNVYKDYRQLELACETQEEVDSWKASFLRA 115 (125)
T ss_dssp SSCSSTTCSSEEEEESSHHHHHHHHHHHHHT
T ss_pred CccccccceEEEEeCCCHHHHHHHHHHHHhC
Confidence 2 4469999999999999999999655
No 23
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.65 E-value=9.3e-16 Score=138.50 Aligned_cols=98 Identities=18% Similarity=0.310 Sum_probs=75.4
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee---eccCCcceEEE
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VREDKKLLTVL 93 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~---~~~~Kk~~fvi 93 (724)
..++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+. ....++++|.|
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~~~~~~~~~~~~~~F~i 71 (113)
T 1pls_A 3 PKRIREGYLV--KKGSVFNTWKPMWVVLLEDGIEFYKKKSDNS---------PKGMIPLKGSTLTSPCQDFGKRMFVFKI 71 (113)
T ss_dssp CCCSEEEEEE--EESSSSSCCEEEEEEEETTEEEEESSTTCSS---------CSEEEESSSCCEESSCCSSCCSSSEEEE
T ss_pred CCCcEEEEEE--EeCCCCCCceEEEEEEECCEEEEEeCCCCCC---------cceEEEcCCCEEEEecCCCCCCccEEEE
Confidence 4578999665 7787889999999999999999999986554 33445565554432 12345578877
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
.. .++++|+|+|+|.+|+.+|+.+|+.++...
T Consensus 72 ~~--~~~r~~~l~a~s~~e~~~Wi~ai~~~~~~~ 103 (113)
T 1pls_A 72 TT--TKQQDHFFQAAFLEERDAWVRDINKAIKCI 103 (113)
T ss_dssp EE--TTTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred Ec--CCCCEEEEECCCHHHHHHHHHHHHHHHhcc
Confidence 64 236999999999999999999999999754
No 24
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.64 E-value=4.8e-16 Score=139.63 Aligned_cols=102 Identities=20% Similarity=0.324 Sum_probs=75.2
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceEE
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTV 92 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~--~~Kk~~fv 92 (724)
.+..++++|||+ |+|...+.|++|||||+++.|+||+++.+..| .+.|.|..+..+... ..++++|.
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~~---------~~~i~L~~~~~~~~~~~~~~~~~F~ 72 (109)
T 1wgq_A 4 GSSGSTMSGYLY--RSKGSKKPWKHLWFVIKNKVLYTYAASEDVAA---------LESQPLLGFTVTLVKDENSESKVFQ 72 (109)
T ss_dssp CCCSCSCEEEEE--EESSTTSCCEEEEEEEETTEEEEESCTTCSSC---------SEEEECSSEEEEECCCSSCSSSEEE
T ss_pred CCCCCeEEEEEE--eCCCCCCCceeEEEEEeCCEEEEECCCCcCcc---------CceEECCCCEEEECCCCCCCCcEEE
Confidence 345678999666 66777899999999999999999999876552 233444443332221 23457887
Q ss_pred EEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 93 it~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
|.. .++++|+|+|+|++|+.+|+.+|+.++...|+
T Consensus 73 i~~--~~~~~~~~~a~s~~e~~~Wi~al~~a~~~~~~ 107 (109)
T 1wgq_A 73 LLH--KGMVFYVFKADDAHSTQRWIDAFQEGTVSGPS 107 (109)
T ss_dssp EEE--TTEEEEEEECSSHHHHHHHHHHHHHHHSCCCC
T ss_pred EEe--CCCeEEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence 764 34688999999999999999999999865543
No 25
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=139.12 Aligned_cols=101 Identities=20% Similarity=0.256 Sum_probs=75.0
Q ss_pred CCCCCCceEEEeeeeeeccCCCC-CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcce
Q 004901 12 RPGASNTVFKSGPLFISSKGIGW-KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (724)
Q Consensus 12 ~~~~~~~V~KeG~L~l~Kkg~~~-k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~ 90 (724)
++.....++++|||+ |+|... +.|++|||||+++.|+||+++.... .+.|.+..+. +.+...++++
T Consensus 3 ~~~~~~~~~~~G~L~--K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~----------~~~i~l~~~~-v~~~~~~~~~ 69 (114)
T 2da0_A 3 SGSSGYGSEKKGYLL--KKSDGIRKVWQRRKCSVKNGILTISHATSNRQ----------PAKLNLLTCQ-VKPNAEDKKS 69 (114)
T ss_dssp CSCCCCCSCEEEEEE--EECSSSCCCEEEEEEEEETTEEEECCSSCCSC----------CEEEETTTSE-EEECSSSSSC
T ss_pred CCCCCCCccEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEEcCCCCCC----------CCEEEeeeeE-EEECCCCCCE
Confidence 345566789999666 565544 8999999999999999999965432 2234443332 2233456678
Q ss_pred EEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004901 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (724)
Q Consensus 91 fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap 128 (724)
|.|... +++|+|+|+|++|+.+|+.+|+.++..+-
T Consensus 70 F~I~~~---~r~~~l~a~s~~e~~~Wi~al~~~~~~~~ 104 (114)
T 2da0_A 70 FDLISH---NRTYHFQAEDEQDYVAWISVLTNSKEEAL 104 (114)
T ss_dssp EEEEET---TEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEcC---CcEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 877643 79999999999999999999999997553
No 26
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.64 E-value=5.8e-16 Score=140.22 Aligned_cols=102 Identities=25% Similarity=0.446 Sum_probs=75.8
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEe--CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee--------
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-------- 83 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~--~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-------- 83 (724)
.....++++|||+ |+|...+.|++|||||+ ++.|+||+++.+..+. +.|.|..+..+..
T Consensus 3 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~---------g~i~L~~~~~v~~~~~~~~~~ 71 (117)
T 1v5u_A 3 SGSSGRSYEGILY--KKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECK---------GVIDLAEVEAVAPGTPTIGAP 71 (117)
T ss_dssp SSCCSSSEEEEEE--ECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCC---------CEEEGGGEEEEECCCCCTTSC
T ss_pred CCcCCccEEEEEE--ecCCCCCCceeeEEEEECCCCEEEEeecCCCCccc---------eEEEccCcEEEeecCcccccc
Confidence 3456689999665 77777899999999999 8899999998775533 3344433332211
Q ss_pred -ccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 84 -REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 84 -~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
...++++|.|.. .+++|+|+|+|++++++|+.+|+.++...|+
T Consensus 72 ~~~~~~~~F~i~~---~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 115 (117)
T 1v5u_A 72 KTVDEKAFFDVKT---TRRVYNFCAQDVPSAQQWVDRIQSCLSSGPS 115 (117)
T ss_dssp SSSCTTTCEEEEE---SSCEEEEECSSHHHHHHHHHHHHTTCCCCCC
T ss_pred ccCCCCeEEEEEC---CCceEEEECCCHHHHHHHHHHHHHHhccCCC
Confidence 123447787754 3799999999999999999999999876654
No 27
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=99.64 E-value=6.3e-16 Score=144.28 Aligned_cols=112 Identities=25% Similarity=0.426 Sum_probs=73.2
Q ss_pred CCCCceEEEeeeeeec---cCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCC--CceeeeeeCcEEcCCCcceee--cc
Q 004901 14 GASNTVFKSGPLFISS---KGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQR--GGEVNLTLGGIDLNNSGSVVV--RE 85 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~K---kg~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~--~~~~~l~L~~I~L~~~~sv~~--~~ 85 (724)
.....+.|+|||++++ +|. .+++|++|||||+++.|+|||+........ +.....+.+.|+|..+..... ..
T Consensus 7 ~~~~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~ 86 (129)
T 2p0d_A 7 VGSHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLS 86 (129)
T ss_dssp --CCSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTSC
T ss_pred CCCcceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCCC
Confidence 3456899999887532 232 248999999999999999999985321100 000112344455655443222 23
Q ss_pred CCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 86 ~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
.++++|.|.. .++++|+|+|++++||++||.+|+.+|.+.
T Consensus 87 kr~~~F~l~t--~~~~~yl~qA~s~~e~~~Wi~aI~~~i~~~ 126 (129)
T 2p0d_A 87 SRRNVLHIRT--IPGHEFLLQSDHETELRAWHRALRTVIERL 126 (129)
T ss_dssp SSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 4557787753 457899999999999999999999999753
No 28
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=2.4e-15 Score=140.15 Aligned_cols=109 Identities=23% Similarity=0.400 Sum_probs=73.2
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEE-eCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCC-Ccceee--ccCCcc
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNN-SGSVVV--REDKKL 89 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL-~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~-~~sv~~--~~~Kk~ 89 (724)
+....++++|||+ |+|...+.|++||||| +++.|+||+++.+..+.+...+.+.+..|.+.. |..+.. ...+++
T Consensus 3 ~~~~~v~~~G~L~--K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~ 80 (130)
T 2d9v_A 3 SGSSGLVRGGWLW--RQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDG 80 (130)
T ss_dssp TSCCCEEEEEEEE--EECSSSCCEEEEEEEEETTTEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTT
T ss_pred CCCCceeEEEEEE--eecCccCCceeeEEEEccCCEEEEEeCCCCCCcCceEecccceeEEeccccccccCCCCCCCcCc
Confidence 4567799999666 7777789999999999 899999999987654222110000011111110 111111 124557
Q ss_pred eEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 90 ~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
+|.|.. .++|+|+|+|+|++|+++||.||+.++..
T Consensus 81 ~F~I~~--~~~r~~~l~A~s~~e~~~Wi~al~~a~~~ 115 (130)
T 2d9v_A 81 LLTVNL--REGSRLHLCAETRDDAIAWKTALMEANST 115 (130)
T ss_dssp EEEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEEEEe--CCCCEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 887764 24689999999999999999999999863
No 29
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=140.03 Aligned_cols=98 Identities=23% Similarity=0.330 Sum_probs=75.8
Q ss_pred CCCceEEEeeeeeeccCC--CCCCcEEEEEEEeCC--eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcce
Q 004901 15 ASNTVFKSGPLFISSKGI--GWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLL 90 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~--~~k~WKKRWFVL~~~--~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~ 90 (724)
....+.++|||+ |+|. ..+.|++|||||+++ .|+||++..+.. +.+.|+|..+..+.....++++
T Consensus 4 ~~~~~~~~G~L~--K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~---------~~g~I~L~~~~~~~~~~~~~~~ 72 (119)
T 2dhk_A 4 GSSGKKLCGYLS--KFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDAN---------PLDSIDLSSAVFDCKADAEEGI 72 (119)
T ss_dssp SCSCCCCEEEEE--ECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCS---------CSEEEEGGGCEEEECTTGGGCE
T ss_pred CCCCCcEEEEEE--ecCCCCCCCCceeEEEEEECCccEEEEECCCCCcc---------cccEEECCCCEEEecCCCCCCE
Confidence 445678999666 6664 688999999999998 999999987754 4445666665544333345577
Q ss_pred EEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 91 fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
|.|... +|+|+|+|+|++|+++||.+|+.++..
T Consensus 73 F~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (119)
T 2dhk_A 73 FEIKTP---SRVITLKAATKQAMLYWLQQLQMKRWE 105 (119)
T ss_dssp EEEECS---SCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC---CcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 877643 799999999999999999999999853
No 30
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=99.63 E-value=2.4e-15 Score=146.16 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=74.9
Q ss_pred CCCCCceEEEeeeeeeccC---CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee------
Q 004901 13 PGASNTVFKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV------ 83 (724)
Q Consensus 13 ~~~~~~V~KeG~L~l~Kkg---~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~------ 83 (724)
..-...++++|||+++.++ ...++||+|||||+++.|+||+++.+.... .+.|.|..+..+..
T Consensus 9 ~~m~~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~~--------~G~I~L~~~~~v~~~~~~~~ 80 (164)
T 2lul_A 9 SHMNFNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYR--------KGFIDVSKIKCVEIVKNDDG 80 (164)
T ss_dssp CCCCSSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSCCC--------CCEEEGGGCCEEEECCCCSS
T ss_pred ccCCCCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCccccc--------ccEEEEeeeEEEEecccccc
Confidence 3556789999988855332 235689999999999999999987654322 22344443322211
Q ss_pred --ccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 84 --REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 84 --~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
....+++|.|... .|+|||+|+|++|+++||.+|++++...++
T Consensus 81 ~~~~~~~~~f~i~t~---~rt~~l~A~s~~e~~~Wi~aL~~~i~~n~~ 125 (164)
T 2lul_A 81 VIPCQNKYPFQVVHD---ANTLYIFAPSPQSRDLWVKKLKEEIKNNNN 125 (164)
T ss_dssp SCCSSSCSEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHTTCSC
T ss_pred CcccccceeEEEecC---CcEEEEECCCHHHHHHHHHHHHHHHHHChh
Confidence 1234466766543 699999999999999999999999986654
No 31
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.63 E-value=1.8e-15 Score=137.20 Aligned_cols=97 Identities=25% Similarity=0.359 Sum_probs=75.8
Q ss_pred CCCCceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004901 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fv 92 (724)
.....++++|||+ |+|. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.... +++|.
T Consensus 3 ~~~~~~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~--~~~F~ 69 (115)
T 2cod_A 3 SGSSGKVKSGWLD--KLSPQGKRMFQKRWVKFDGLSISYYNNEKEMY---------SKGIIPLSAISTVRVQG--DNKFE 69 (115)
T ss_dssp CCCSCCCEEEEEE--ECCSSSSSCCEEEEEEECSSEEEEEESSCCSS---------CCCEEETTTEEEEEEET--TTEEE
T ss_pred CCCCCccEEEEEE--EcCCCCCCCCceEEEEEECCEEEEEcCCCCcc---------cCCEEECCcceEEEeCC--CCEEE
Confidence 4456689999666 6666 688999999999999999999987654 34456666654443332 56777
Q ss_pred EEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 93 it~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
|.. .+++|+|+|++.+|+++|+.+|+.++..
T Consensus 70 i~~---~~r~~~l~a~s~~e~~~Wi~~l~~~~~~ 100 (115)
T 2cod_A 70 VVT---TQRTFVFRVEKEEERNDWISILLNALKS 100 (115)
T ss_dssp EEE---SSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEe---CCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 753 3799999999999999999999999954
No 32
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=99.63 E-value=1.6e-16 Score=147.32 Aligned_cols=108 Identities=17% Similarity=0.274 Sum_probs=72.1
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCC----CCCCCCceeeeeeCcEEcCCCcceeec---cC
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS----ALPQRGGEVNLTLGGIDLNNSGSVVVR---ED 86 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~----~~p~~~~~~~l~L~~I~L~~~~sv~~~---~~ 86 (724)
...+.+.|+|||+ |+|...+.|++|||||+++.|+||++... ..|.+.. +.+.|+|..+...... ..
T Consensus 7 ~~~~~~~k~G~L~--K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~----~~G~I~L~~~~v~~~~~~~~~ 80 (124)
T 2w2x_D 7 SKKDEHKQQGELY--MWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSL----CRGILDLNTYNVVKAPQGKNQ 80 (124)
T ss_dssp ------CCEEEEE--EEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCS----CSEEEEGGGEEEEECTTCBTT
T ss_pred hhhhhcceeEEEE--EECCCCCCceEeEEEEECCEEEEEcccccccccccccCCc----cccEEECCCCEEEEccCCcCC
Confidence 3456789999666 67777899999999999999999998532 2222211 2344555554432222 34
Q ss_pred CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 87 Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
++++|.|.....+.++|+|+|+|.+|+++||.||+.++..+
T Consensus 81 k~~~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~~~ 121 (124)
T 2w2x_D 81 KSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREITWKI 121 (124)
T ss_dssp BSEEEEEEECC--CCCEEEEECCCHHHHHHHHHHHHHHC--
T ss_pred CCEEEEEECCCCCCceEEEEECCHHHHHHHHHHHHHHHHhh
Confidence 66788886644445789999999999999999999998644
No 33
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=99.62 E-value=3.2e-15 Score=133.58 Aligned_cols=97 Identities=27% Similarity=0.434 Sum_probs=72.0
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCC--eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-------c
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-------E 85 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~--~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~-------~ 85 (724)
....++++|||+ |+|...+.|++|||||+++ .|+||+++.+.. +.+.|.|..+...... .
T Consensus 3 ~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 71 (109)
T 2i5f_A 3 FTGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---------PLGAIHLRGCVVTSVESNSNGRKS 71 (109)
T ss_dssp CCCCEEEEEEEE--EECTTTCCEEEEEEEEETTTTEEEEECTTSCSS---------CSEEEECTTCEEEEECC-------
T ss_pred ccCceeEEEEEE--EcCCCCCCceEEEEEEeCCCcEEEEECCCCCCC---------ccEEEECCCCEEEEccCCcccccC
Confidence 456799999666 6777789999999999986 999999876654 2334555543322111 1
Q ss_pred CCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 86 ~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
.++++|.|.. .++++|+|+|+|++|+++|+.+|+.++
T Consensus 72 ~~~~~F~i~~--~~~~~~~l~a~s~~e~~~Wi~ai~~~~ 108 (109)
T 2i5f_A 72 EEENLFEIIT--ADEVHYFLQAATPKERTEWIKAIQMAS 108 (109)
T ss_dssp -CCSEEEEEC--TTCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEe--CCCCEEEEEcCCHHHHHHHHHHHHHHh
Confidence 2567787764 346789999999999999999999886
No 34
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=99.62 E-value=1.9e-15 Score=140.79 Aligned_cols=104 Identities=20% Similarity=0.287 Sum_probs=71.7
Q ss_pred CCCceEEEeeeeeeccC-CCCCCcEEEEEEEe---CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----cc
Q 004901 15 ASNTVFKSGPLFISSKG-IGWKSWKKRWFILT---RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----RE 85 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg-~~~k~WKKRWFVL~---~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-----~~ 85 (724)
......++|||+ |+| ...+.|+||||||+ +..|+||+++.+. +.+ ..+++.|.|..+..|.. ..
T Consensus 11 ~~~~~~~~G~L~--K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~-~~~----~~~~G~I~L~~~~~V~~~~~~~~~ 83 (126)
T 1v5p_A 11 VDRQNRICGFLD--IEDNENSGKFLRRYFILDTQANCLLWYMDNPQNL-AVG----AGAVGSLQLTYISKVSIATPKQKP 83 (126)
T ss_dssp CCCCCCEECCEE--EECTTCSSCEEEEEEEEETTTTEEEEESSCTTTS-CTT----CCCSEEEETTTCCEEEECCTTTSC
T ss_pred ecCCCceEEEEE--EeCCCCCCCccceEEEEecCCCCEEEEECCCCCC-CCC----ceeeEEEECCCccEEecCCcccCC
Confidence 334446899665 666 56899999999999 6678888884221 111 01455566666444332 12
Q ss_pred CCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004901 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (724)
Q Consensus 86 ~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap 128 (724)
.+++||+|.. ..|+|||+|+|++|+++||.+|+.++.-.|
T Consensus 84 ~~~~~F~i~t---~~r~y~l~A~s~~e~~~Wi~al~~a~~~~~ 123 (126)
T 1v5p_A 84 KTPFCFVINA---LSQRYFLQANDQKDLKDWVEALNQASKSGP 123 (126)
T ss_dssp SCSSEEEEEC---SSCEEEEECSSHHHHHHHHHHHHHTTTTSS
T ss_pred CCCEEEEEEC---CCEEEEEECCCHHHHHHHHHHHHHHHhcCC
Confidence 3457887754 369999999999999999999999876443
No 35
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=99.62 E-value=2.6e-15 Score=137.70 Aligned_cols=102 Identities=25% Similarity=0.408 Sum_probs=75.7
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEe
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFP 95 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-~~~Kk~~fvit~ 95 (724)
..++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...++++|.|..
T Consensus 3 ~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~f~i~~ 71 (127)
T 1fgy_A 3 FNPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENLSIREVLDPRKPNCFELYN 71 (127)
T ss_dssp SSCSEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEEECCSSCSSEEEEEC
T ss_pred CCCceEeEEE--EECCCCCCeEEEEEEEECCEEEEeCCCCCCC---------cceEEECCceEEEEccCCCCCceEEEec
Confidence 4578999665 7777789999999999999999999877654 333455555433222 234567887754
Q ss_pred cCC-------------------CCceEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 96 DGR-------------------DGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 96 ~~~-------------------~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
... ..++|+|+|+|++|+++|+.+|+.++...|.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~~~~~ 124 (127)
T 1fgy_A 72 PSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPF 124 (127)
T ss_dssp SSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHHHCTT
T ss_pred CCccccccccccccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhccCCc
Confidence 321 2479999999999999999999999986553
No 36
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.8e-15 Score=135.28 Aligned_cols=99 Identities=24% Similarity=0.429 Sum_probs=77.2
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcce
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLL 90 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~---~~Kk~~ 90 (724)
+....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+... ..++++
T Consensus 3 s~~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~~ 71 (115)
T 2dn6_A 3 SGSSGVLKQGYMM--KKGHRRKNWTERWFVLKPNIISYYVSEDLKD---------KKGDILLDENCCVESLPDKDGKKCL 71 (115)
T ss_dssp CCCCSCSEEEEEE--EECTTSSCEEEEEEEECSSCEEEESSTTCSS---------EEEEECCCTTCEEEEECCCTTCCSE
T ss_pred CCCCCceEEEEEE--ecCCCCCCcEEeEEEEECCEEEEeCCCCCcc---------cCcEEEecCcEEEEECCCCCCCeeE
Confidence 3456789999665 7777789999999999999999999876654 4555666654443222 345578
Q ss_pred EEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 91 fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
|.|... +++|+|+|+|++|+++|+.+|+.++..
T Consensus 72 F~i~~~---~r~~~l~a~s~~e~~~Wi~ai~~~~~~ 104 (115)
T 2dn6_A 72 FLVKCF---DKTFEISASDKKKKQEWIQAIHSTIHL 104 (115)
T ss_dssp EEEECS---SCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEeC---CCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 877653 789999999999999999999999974
No 37
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=99.61 E-value=1.3e-15 Score=140.14 Aligned_cols=108 Identities=20% Similarity=0.327 Sum_probs=79.0
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeC-CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTR-TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~-~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (724)
..+.++++|||+ |+|...+.|++|||||++ +.|+||++..+..+.+ .++|..+.+..+........++++|.|
T Consensus 4 ~~~~~~~~G~L~--K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g----~i~L~~~~~~~~~~~~~~~~~~~~F~I 77 (125)
T 1unq_A 4 SDVAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQR----EAPLNNFSVAQCQLMKTERPRPNTFII 77 (125)
T ss_dssp GGGCEEEEEEEE--EECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHH----TSCSEEEECTTCEEEEECSSSTTEEEE
T ss_pred CCCCeeEEeeEE--eccCCccCccCcEEEEecCCEEEEEeCCCCCCCCc----eeEccceeEEeeeecccccCCCCEEEE
Confidence 346789999665 778788999999999995 6999999987643222 235555665544322233456678877
Q ss_pred Ee-cCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004901 94 FP-DGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (724)
Q Consensus 94 t~-~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap 128 (724)
.. .....++|+|+|+|.+|+.+|+.+|+.++...+
T Consensus 78 ~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~~~~ 113 (125)
T 1unq_A 78 RCLQWTTVIERTFHVETPEEREEWTTAIQTVADGLK 113 (125)
T ss_dssp EEEETTEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCceeEEEEeCCHHHHHHHHHHHHHHHhhcc
Confidence 53 223468999999999999999999999997543
No 38
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=99.61 E-value=3.8e-15 Score=135.51 Aligned_cols=95 Identities=21% Similarity=0.374 Sum_probs=69.5
Q ss_pred EEEeeeeeeccCC---CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce----eeccCCcceEE
Q 004901 20 FKSGPLFISSKGI---GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV----VVREDKKLLTV 92 (724)
Q Consensus 20 ~KeG~L~l~Kkg~---~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv----~~~~~Kk~~fv 92 (724)
.|+|||+++ .|+ ..+.|++|||||+++.|+|||+..+..| .+.|+|...... .....++++|.
T Consensus 1 tkeG~L~kK-~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p---------~~~i~l~~~~~~~~~~~~~~~r~~~F~ 70 (112)
T 3cxb_B 1 TKEGMLHYK-AGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIP---------LLSVNMGGEQCGGCRRANTTDRPHAFQ 70 (112)
T ss_dssp CEEEEEEEC-CSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSC---------SEEEETTC-CEEEEEECCCSSCTTEEE
T ss_pred CceEEEEEe-CCCCCCCCCCceEEEEEEECCEEEEECCCCCCCc---------cceEEecCCEEEeeeccCCCCCCeEEE
Confidence 379977633 232 5789999999999999999999876553 233555433211 12235668888
Q ss_pred EEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 93 it~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
|.. .++++|+|+|+|+++|++||.+|+.++..
T Consensus 71 l~~--~~~~~y~f~A~s~ee~~~Wi~ai~~~~~~ 102 (112)
T 3cxb_B 71 VIL--SDRPCLELSAESEAEMAEWMQHLCQAVSK 102 (112)
T ss_dssp EEE--TTSCCEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred EEc--CCCCEEEEEcCCHHHHHHHHHHHHHHhhc
Confidence 764 34789999999999999999999999864
No 39
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=99.61 E-value=3.7e-15 Score=137.14 Aligned_cols=100 Identities=31% Similarity=0.410 Sum_probs=77.8
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceE
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLT 91 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~--~~Kk~~f 91 (724)
.....++++|||+ |+|...+.|++|||||+++.|+||+++.+.. +.+.|+|..+..+... ..++++|
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~~v~~~~~~~~~~~F 81 (126)
T 1fao_A 13 TAPSLGTKEGYLT--KQGGLVKTWKTRWFTLHRNELKYFKDQMSPE---------PIRILDLTECSAVQFDYSQERVNCF 81 (126)
T ss_dssp --CCTTCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEEGGGCCEEEEECSSSSSSEE
T ss_pred CCCCCccEEEEEE--EcCCCCCCcccEEEEEECCEEEEeCCCCCCC---------ceeEEEccceEEEEecccCCCCCEE
Confidence 4566789999665 7777789999999999999999999887654 3445666666544332 3455788
Q ss_pred EEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 92 vit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
.|... +++|+|+|+|++++.+|+.+|+.++...
T Consensus 82 ~i~~~---~r~~~l~a~s~~e~~~Wi~al~~~i~~~ 114 (126)
T 1fao_A 82 CLVFP---FRTFYLCAKTGVEADEWIKILRWKLSQI 114 (126)
T ss_dssp EEEET---TEEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred EEEeC---CcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 77653 7999999999999999999999999753
No 40
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=99.61 E-value=6.8e-15 Score=135.91 Aligned_cols=100 Identities=26% Similarity=0.411 Sum_probs=74.9
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCC--eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-------
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT--SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR------- 84 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~--~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~------- 84 (724)
.....++++|||+ |+|...+.|++|||||+++ .|+||++..+.. +.+.|.|..+..+...
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~ 81 (129)
T 1x05_A 13 EFRGVIIKQGCLL--KQGHRRKNWKVRKFILREDPAYLHYYDPAGAED---------PLGAIHLRGCVVTSVESNSNGRK 81 (129)
T ss_dssp TTCSEEEEEEEEE--ECCSSCCCCEEEEEEEEETTTEEEEECSSCCSS---------CSEEEECTTCEEEECCCCCCSSS
T ss_pred cccCCceEEEEEE--ecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCc---------ceeEEEccCCEEEEccCCccccc
Confidence 4567899999665 7787789999999999976 899999876554 3334555543322111
Q ss_pred cCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 85 ~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
..++++|.|.. .++++|+|+|+|.+|+++|+.+|+.++..
T Consensus 82 ~~~~~~F~i~~--~~~~~~~l~a~s~~e~~~Wi~al~~~~~~ 121 (129)
T 1x05_A 82 SEEENLFEIIT--ADEVHYFLQAATPKERTEWIKAIQMASRT 121 (129)
T ss_dssp CSSCSEEEEEC--TTCCCCEEECSSHHHHHHHHHHHHHHHTC
T ss_pred cCCCeEEEEEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHc
Confidence 12567887764 24688999999999999999999999874
No 41
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=99.61 E-value=2.9e-15 Score=137.17 Aligned_cols=100 Identities=24% Similarity=0.399 Sum_probs=75.9
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----ccCCc
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKK 88 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-----~~~Kk 88 (724)
.....++++|||+ |+|...+.|++|||||+++.|+||++..+.. +.+.|.|..+..+.. ...++
T Consensus 9 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~l~~~~~v~~~~~~~~~~~~ 77 (125)
T 1eaz_A 9 PQDSAVIKAGYCV--KQGAVMKNWKRRYFQLDENTIGYFKSELEKE---------PLRVIPLKEVHKVQECKQSDIMMRD 77 (125)
T ss_dssp ---CCCSEEEEEE--EECTTTCCEEEEEEEECSSEEEEESSTTCSS---------CSEEEEGGGCCEEEECTTHHHHTCS
T ss_pred CCCCCccEEEEEE--EeCCCCCCcceEEEEEeCCEEEEEcCCCCCc---------ceeEEEcccceEEeeccccccCCcC
Confidence 4567789999666 6777789999999999999999999987654 334455655443322 12456
Q ss_pred ceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
++|.|... +++|+|+|+|++|+.+|+.+|+.++...
T Consensus 78 ~~F~i~~~---~r~~~l~a~s~~e~~~W~~al~~~i~~~ 113 (125)
T 1eaz_A 78 NLFEIVTT---SRTFYVQADSPEEMHSWIKAVSGAIVAQ 113 (125)
T ss_dssp SEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred CEEEEEeC---CcEEEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 78877643 7999999999999999999999999743
No 42
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.60 E-value=7.7e-15 Score=135.42 Aligned_cols=100 Identities=24% Similarity=0.403 Sum_probs=73.4
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEe--CCeEEEEcCC-CCCCCCCCceeeeeeCcEEcCCCcceeeccC----
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKND-PSALPQRGGEVNLTLGGIDLNNSGSVVVRED---- 86 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~--~~~L~yYKd~-~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~---- 86 (724)
.....++++|||+ |+|...+.|++|||||+ +..|+||+++ .+.. +.+.|+|..+........
T Consensus 13 ~~~~~~~~~G~L~--K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~---------~~g~i~L~~~~v~~~~~~~~p~ 81 (129)
T 1x1g_A 13 ELSGTVVKQGYLA--KQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENR---------PVGGFSLRGSLVSALEDNGVPT 81 (129)
T ss_dssp TTCSEEEEEEEEE--EECSSSSSEEEEEEEEEESSCEEEEECSSSCCSS---------CSCCEESTTCCCEECCSSSSCS
T ss_pred ccCCCEEEEEEEE--EECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCc---------cceEEECcCCEEEEeCCCCCcc
Confidence 4567899999665 77777899999999999 4799999986 3333 344455555433211111
Q ss_pred ------CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 87 ------KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 87 ------Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
++++|.|.. .++++|+|+|+|++|+++|+.+|+.++..
T Consensus 82 ~~~~~~~~~~F~I~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 125 (129)
T 1x1g_A 82 GVKGNVQGNLFKVIT--KDDTHYYIQASSKAERAEWIEAIKKLTSG 125 (129)
T ss_dssp SCSSCCCSSCEEECC--TTCCCEEECCSSHHHHHHHHHHHHHHSSS
T ss_pred cccCCCCCceEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 457787754 34688999999999999999999999853
No 43
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=99.59 E-value=4.5e-15 Score=137.18 Aligned_cols=100 Identities=22% Similarity=0.294 Sum_probs=70.9
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC--------Ccce
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED--------KKLL 90 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~--------Kk~~ 90 (724)
++++|||+ |+|...++|++|||||+++.|+|||++..... ..+...++|.+|.+..... ... +.++
T Consensus 6 ~~k~G~L~--Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d-~~P~gsI~L~~c~v~~~~~---~~~~~~~~~~~~~~~ 79 (120)
T 4a6h_A 6 EIKSGFLE--RRSKFLKSYSKGYYVLTPNFLHEFKTADRKKD-LVPVMSLALSECTVTEHSR---KNSTSSPNSTGSDAK 79 (120)
T ss_dssp CSEEEEEE--EEETTTTEEEEEEEEECSSEEEEESSCCTTTC-CSCSEEEEGGGEEEEEECC---CCC---------CCE
T ss_pred ccEEEEEE--EcCCCCCCCccEEEEEeCCEEEEEcCCCcCcC-CCceEEEECCCCEEEEccc---ccccccccccCCCcE
Confidence 89999665 77777899999999999999999998753321 1133344555554443111 111 5577
Q ss_pred EEEEecCC----CCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 91 TVLFPDGR----DGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 91 fvit~~~~----~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
|+|..... .++.|+|+|+|.+||++|+.+|+.++
T Consensus 80 F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~ 117 (120)
T 4a6h_A 80 FVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILT 117 (120)
T ss_dssp EEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHHh
Confidence 88865432 14699999999999999999999875
No 44
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=133.82 Aligned_cols=99 Identities=23% Similarity=0.433 Sum_probs=73.4
Q ss_pred CCCCceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee----ccCCc
Q 004901 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKK 88 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~----~~~Kk 88 (724)
.+...++++|||+ |++. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...++
T Consensus 16 ~~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 84 (128)
T 2dkp_A 16 NPNAPVVRRGWLY--KQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEG---------ILGSILLPSFQIALLTSEDHINRK 84 (128)
T ss_dssp CTTSCCCEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCS---------EEEEECGGGSEEEECCGGGCCSSC
T ss_pred CCCCCcEEEEEEE--EeCCCCCCCceeEEEEEeCCEEEEECCCCCcc---------cceEEEcCceEEEEcCCcccCCCC
Confidence 4566789999776 5554 688999999999999999999887654 333444443322111 12456
Q ss_pred ceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
++|.|.. .++++|+|+|+|++|+++|+.+|+.++.
T Consensus 85 ~~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 119 (128)
T 2dkp_A 85 YAFKAAH--PNMRTYYFCTDTGKEMELWMKAMLDAAL 119 (128)
T ss_dssp SEEEEEC--SSSCCEEEECSSHHHHHHHHHHHHHHHS
T ss_pred eEEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 7887764 3469999999999999999999999875
No 45
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=99.59 E-value=3.1e-15 Score=146.21 Aligned_cols=104 Identities=17% Similarity=0.181 Sum_probs=69.8
Q ss_pred ceEEEeeeeeeccC---CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cC----C
Q 004901 18 TVFKSGPLFISSKG---IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---ED----K 87 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg---~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~---~~----K 87 (724)
.|+|+|||+++.++ ..+++||+|||||+++.|+||++..+.. .-..+.+.|.|..+..+... .. +
T Consensus 2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~-----~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~ 76 (169)
T 1btk_A 2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERG-----RRGSKKGSIDVEKITCVETVVPEKNPPPER 76 (169)
T ss_dssp CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTT-----EEEEEEEEEEGGGEEEEEECCCCSSCCGGG
T ss_pred ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccC-----CCCceeeEEECcceEEEEeccCCCCcchhc
Confidence 47899977754333 2368899999999999999999832110 01114455555543332111 11 1
Q ss_pred c---------------------ceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 88 K---------------------LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 88 k---------------------~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
+ ++|.|... .++|||+|+|++|+++||.+|+.++...|.
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~---~rt~yl~A~s~~E~~eWi~aI~~~i~~n~~ 136 (169)
T 1btk_A 77 QIPRRGEESSEMEQISIIERFPYPFQVVYD---EGPLYVFSPTEELRKRWIHQLKNVIRYNSD 136 (169)
T ss_dssp CC---------CCTTHHHHCCCEEEEEEET---TCCEEEEESCHHHHHHHHHHHHHHHTTCSC
T ss_pred ccccccCcccccccccccccccccEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHHHCcc
Confidence 1 56755442 589999999999999999999999986553
No 46
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=2.3e-14 Score=130.77 Aligned_cols=98 Identities=29% Similarity=0.454 Sum_probs=73.0
Q ss_pred CCCceEEEeeeeeeccC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee----ccCCcc
Q 004901 15 ASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKL 89 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg-~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~----~~~Kk~ 89 (724)
+...++++|||+ |+| ...+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...+++
T Consensus 18 ~~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~~ 86 (122)
T 2yry_A 18 PNAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEES---------ILGSIPLLSFRVAAVQPSDNISRKH 86 (122)
T ss_dssp TTCCEEEEEEEE--EECCSSSCCEEEEEEEEETTEEEEESSTTCCS---------CCEEEESTTCCCEECCTTCSCSSSS
T ss_pred CCCCccEEEEEE--EECCCCCCCcEEEEEEEeCCEEEEECCCCCCC---------cccEEEcCCCEEEEcCccccCCccc
Confidence 455699999776 554 3578999999999999999999987655 233455554432111 124567
Q ss_pred eEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 90 ~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
+|.|.. .++++|+|+|+|++|+++|+.+|+.++.
T Consensus 87 ~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 120 (122)
T 2yry_A 87 TFKAEH--AGVRTYFFSAESPEEQEAWIQAMGEAAR 120 (122)
T ss_dssp EEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred EEEEec--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 888753 3479999999999999999999999874
No 47
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=99.59 E-value=7.2e-15 Score=130.57 Aligned_cols=98 Identities=21% Similarity=0.385 Sum_probs=71.9
Q ss_pred ceEEEeeeeeeccCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----ccCCcce
Q 004901 18 TVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKKLL 90 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg~--~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-----~~~Kk~~ 90 (724)
.++++|||+++.++. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...++++
T Consensus 2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~~~~ 72 (108)
T 1u5d_A 2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQ---------PKGTFLIKGYSVRMAPHLRRDSKKESC 72 (108)
T ss_dssp CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECGGGCSSGGGGGE
T ss_pred CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCC---------CCEEEEecceEEEeCCccccccCCcce
Confidence 589999777544332 238999999999999999999987654 233355554443221 1234578
Q ss_pred EEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 91 fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
|.|.. .++++|+|+|+|.+|+.+|+.+|+.++..
T Consensus 73 F~i~~--~~~r~~~l~a~s~~e~~~Wi~ai~~~i~~ 106 (108)
T 1u5d_A 73 FELTS--QDRRTYEFTATSPAEARDWVDQISFLLKD 106 (108)
T ss_dssp EEEEC--SSSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EEEEc--CCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence 87764 34599999999999999999999999863
No 48
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=3.1e-15 Score=134.25 Aligned_cols=99 Identities=19% Similarity=0.276 Sum_probs=71.2
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF 94 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit 94 (724)
....+.++|||++ + ..+.|++|||||+++.|+||+++.+. ..+.+.+.+.++.+... ....++++|.|.
T Consensus 4 ~~~~~~~~G~L~K--~--~~k~Wk~RwfvL~~~~L~yyk~~~~~---~~~~~~i~l~~~~v~~~----~~~~~~~~F~i~ 72 (107)
T 2cof_A 4 GSSGLETSSYLNV--L--VNSQWKSRWCSVRDNHLHFYQDRNRS---KVAQQPLSLVGCEVVPD----PSPDHLYSFRIL 72 (107)
T ss_dssp CCCCCTTCCEEEE--E--ETTEEEEEEEEECSSCEEEECSSTTC---SEEEEEECTTTCEEECC----CBTTBSCEEEEE
T ss_pred CCCCCcEeEEEEE--e--cCCCcceEEEEEECCEEEEEeCCccc---CCCeeEEeccceEEEEC----CCCCCCeEEEEE
Confidence 4456789997774 4 57889999999999999999987652 12333334444322221 123456788776
Q ss_pred ecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 95 ~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
.. +.++|+|+|+|++|+++||.+|+.++..
T Consensus 73 ~~--~~r~~~l~A~s~~e~~~Wi~al~~~~~~ 102 (107)
T 2cof_A 73 HK--GEELAKLEAKSSEEMGHWLGLLLSESGS 102 (107)
T ss_dssp ET--TEEEEEEECSSHHHHHHHHHHHHHHSSC
T ss_pred eC--CCeEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence 52 3689999999999999999999988753
No 49
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=2.8e-15 Score=137.81 Aligned_cols=108 Identities=25% Similarity=0.406 Sum_probs=74.2
Q ss_pred CCCceEEEeeeeeecc------CCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCC--CceeeeeeCcEEcCCCcceee--c
Q 004901 15 ASNTVFKSGPLFISSK------GIGWKSWKKRWFILTRTSLVFFKNDPSALPQR--GGEVNLTLGGIDLNNSGSVVV--R 84 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kk------g~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~--~~~~~l~L~~I~L~~~~sv~~--~ 84 (724)
....+.++|||+++.. ....+.|++|||||+++.|+||+++.+..... .+... |++..+..... .
T Consensus 4 ~~~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~-----i~l~~~~~~~~~~~ 78 (123)
T 1wjm_A 4 GSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVP-----VSLARAQGSVAFDY 78 (123)
T ss_dssp CCCCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCC-----EECTTCEEEECTTC
T ss_pred CCCCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCce-----EEccCcEEeecccc
Confidence 4566889997774321 11278999999999999999999976542110 11222 34433222111 1
Q ss_pred cCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 85 EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 85 ~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
..++++|.|.. .++++|+|+|+|++||++||.+|+.++...|+
T Consensus 79 ~~r~~~F~i~~--~~~~~~~f~A~s~~e~~~Wi~ai~~~~~~~~~ 121 (123)
T 1wjm_A 79 RKRKHVFKLGL--QDGKEYLFQAKDEAEMSSWLRVVNAAIASGPS 121 (123)
T ss_dssp SSCSSEEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHHCCC
T ss_pred cCCCCEEEEEE--cCCcEEEEECCCHHHHHHHHHHHHHHHhccCC
Confidence 34567887764 34799999999999999999999999986554
No 50
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.58 E-value=7.2e-15 Score=134.18 Aligned_cols=99 Identities=18% Similarity=0.236 Sum_probs=72.8
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCC---eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT---SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~---~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (724)
..+++.|||++ ++. .+.|++|||||+++ .|+||+++.+..|.+ .++|.++.+..... .....++++|.|
T Consensus 6 ~~~~~~G~L~k--~~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g----~I~L~g~~V~~~~~-~~~~~~~~~Fki 77 (112)
T 2coc_A 6 SGSLLCGPLRL--SES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPR----TIPLPSCKLSVPDP-EERLDSGHVWKL 77 (112)
T ss_dssp SSSSSEEEEEE--ESS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCS----EECGGGCEEECCCS-SSCCSSSEEEEE
T ss_pred CCceEEEEEEe--cCC-CCCceEEEEEEECCCccEEEEECCCCccCcce----EEEcCCCEEEecCc-ccccCCCCEEEE
Confidence 34567797775 333 78899999999985 799999998866433 45666666553111 112346788887
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
... +++|+|+|+|++++++||.+|+.|+..
T Consensus 78 ~~~---~~~y~f~A~s~e~~~~Wl~al~~A~~~ 107 (112)
T 2coc_A 78 QWA---KQSWYLSASSAELQQQWLETLSTAAHS 107 (112)
T ss_dssp EET---TEEEEEEESSHHHHHHHHHHHHHHHSC
T ss_pred ecC---CeEEEEEcCCHHHHHHHHHHHHHHhcC
Confidence 743 789999999999999999999998764
No 51
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=3.4e-15 Score=136.77 Aligned_cols=100 Identities=18% Similarity=0.319 Sum_probs=74.1
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEe--CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILT--RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~--~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fv 92 (724)
....+.++|||+ |+|...+.|++|||||+ ++.|+||+++.+.... +.+.|.|..+. +.....++++|.
T Consensus 4 ~~~~~~~~G~L~--K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~-------~~g~I~L~~~~-v~~~~~~~~~F~ 73 (120)
T 2d9x_A 4 GSSGENVYGYLM--KYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQK-------PRGTLQLAGAV-ISPSDEDSHTFT 73 (120)
T ss_dssp CCSCCCCEEEEE--EEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSC-------CSEEEECTTCC-EECCSSSSSCEE
T ss_pred CCCCCcEEEEEE--ecCCCCCCceEEEEEEECCCCEEEEEecCcccCCC-------ccceEEcceEE-EEecCCCCCEEE
Confidence 345678999666 66667889999999999 4799999987653111 34446666543 223344567787
Q ss_pred EEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 93 it~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
|.. .++++|+|+|+|++|+++||.+|+.++..
T Consensus 74 i~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~~ 105 (120)
T 2d9x_A 74 VNA--ASGEQYKLRATDAKERQHWVSRLQICTQH 105 (120)
T ss_dssp ECC--SSSCCEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred EEc--CCCCEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 754 33699999999999999999999999874
No 52
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=99.57 E-value=1.8e-14 Score=131.75 Aligned_cols=102 Identities=25% Similarity=0.416 Sum_probs=72.7
Q ss_pred CCCceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004901 15 ASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (724)
+...++++|||+ |+|. ..+.|++|||||+++.|+||++..+..+.+ .+.|..+.+...... ....++++|.|
T Consensus 7 p~~~~~~~G~L~--K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g----~i~l~~~~v~~~~~~-~~~~~~~~f~i 79 (123)
T 1upq_A 7 PNLPVHIRGWLH--KQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLG----SVLLPSYNIRPDGPG-APRGRRFTFTA 79 (123)
T ss_dssp TTSCEEEEEEEE--EECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCE----EEEGGGCEEEECCSS-CTTSSSSEEEE
T ss_pred CCCCceEEEEEE--eeCCCCCCCceeEEEEEeCCEEEEECCCCCcccce----EEECCCCEEEECCCC-ccCCCcEEEEE
Confidence 445689999776 5553 578999999999999999999987754322 233333333221110 11235677877
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.. .++++|+|+|+|.+|+.+|+.+|+.++.
T Consensus 80 ~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 109 (123)
T 1upq_A 80 EH--PGMRTYVLAADTLEDLRGWLRALGRASR 109 (123)
T ss_dssp EC--TTSCCEEEECSSHHHHHHHHHHHHHHHC
T ss_pred EC--CCCeEEEEECCCHHHHHHHHHHHHHHHh
Confidence 54 3459999999999999999999999986
No 53
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=99.57 E-value=3.8e-15 Score=138.42 Aligned_cols=100 Identities=23% Similarity=0.340 Sum_probs=71.1
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCC---CCCCCCceeeeeeCcEEcCCCcc--eeec----cCC
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPS---ALPQRGGEVNLTLGGIDLNNSGS--VVVR----EDK 87 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~---~~p~~~~~~~l~L~~I~L~~~~s--v~~~----~~K 87 (724)
..|+++|||+++..|...+.|++|||||+++.|+||+++.+ .. +.+.|+|..+.. +... ..+
T Consensus 3 ~~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~---------p~g~I~L~~~~~~~v~~~~~~~~~~ 73 (134)
T 2y7b_A 3 SSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKN---------PIGRINLANCTSRQIEPANREFCAR 73 (134)
T ss_dssp CCCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHTTSC---------CSEEEEGGGBCSSSCEECCTTTCCC
T ss_pred CCceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcccccC---------ceEEEEhhhCccccccccchhhccC
Confidence 46789997775433677889999999999999999995433 22 344455555432 2222 245
Q ss_pred cceEEEEec--CC---------------CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 88 KLLTVLFPD--GR---------------DGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 88 k~~fvit~~--~~---------------~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
+++|.|... .. ..++|+|+|+|++|+.+||.+|+.++.
T Consensus 74 ~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~ 128 (134)
T 2y7b_A 74 RNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV 128 (134)
T ss_dssp TTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 678877531 11 015899999999999999999999986
No 54
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=99.57 E-value=7.2e-15 Score=130.42 Aligned_cols=95 Identities=20% Similarity=0.335 Sum_probs=68.1
Q ss_pred EEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCC
Q 004901 21 KSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDG 100 (724)
Q Consensus 21 KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~g 100 (724)
++|||+ |+|...+.|++|||||+++.|+||+++.+.... +.+.|+|..+.. .....++++|.|.. .++
T Consensus 1 ~eG~L~--K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~-------~~g~i~L~~~~v-~~~~~~~~~F~i~~--~~~ 68 (103)
T 3rcp_A 1 MEGVLY--KWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKG-------SKGSIKMAVCEI-KVHSADNTRMELII--PGE 68 (103)
T ss_dssp CEEEEE--EECCTTTCEEEEEEEEETTEEEEESSCC---CC-------CSCEEEGGGCEE-ECCTTCSSEEEEEE--TTT
T ss_pred CceEEE--EccCCCCCeeceEEEEECCEEEEEecCCcccCC-------cccEEEeeeeEE-EEcCCCCceEEEEe--CCC
Confidence 479555 788888999999999999999999998753211 234455543322 22233456676653 347
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 101 RAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 101 r~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
++|+|+|+|++|+++|+.+|+.|+...
T Consensus 69 r~~~l~a~s~~e~~~Wi~al~~a~~~~ 95 (103)
T 3rcp_A 69 QHFYMKAVNAAERQRWLVALGSSKASL 95 (103)
T ss_dssp EEEEEECSSHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999887644
No 55
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=134.99 Aligned_cols=109 Identities=19% Similarity=0.370 Sum_probs=71.8
Q ss_pred CCCceEEEeeeeeecc---C--CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCC---ceeeeeeCcEEcCCCcceee---
Q 004901 15 ASNTVFKSGPLFISSK---G--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRG---GEVNLTLGGIDLNNSGSVVV--- 83 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kk---g--~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~---~~~~l~L~~I~L~~~~sv~~--- 83 (724)
...+|.|+|||++++- | ...++|++|||||+++.|+|||+.....+.+. .....+.+.|+|..+.....
T Consensus 4 ~~~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d 83 (124)
T 3pp2_A 4 RTKTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKD 83 (124)
T ss_dssp -----CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGG
T ss_pred cCCcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecccc
Confidence 3567999999886521 2 23468999999999999999999876542210 00012334455555433221
Q ss_pred ccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 84 REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 84 ~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
...++++|.+.. .+++.|+|+|+++++|++|+.+|+.||+
T Consensus 84 ~~krk~vF~l~t--~~~~~ylfqA~s~~e~~~Wi~aI~~aI~ 123 (124)
T 3pp2_A 84 KSSRKNVLELRS--RDGSEYLIQHDSEAIISTWHKAIAQGIQ 123 (124)
T ss_dssp GCSSSSEEEEEC--TTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred cCCCceEEEEEC--CCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence 234567777763 4689999999999999999999999985
No 56
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=99.56 E-value=6.9e-15 Score=139.69 Aligned_cols=101 Identities=26% Similarity=0.403 Sum_probs=76.2
Q ss_pred CCCCceEEEeeeeeeccC------CCCCCcEEEEEEEeCC-----eEEEEcCCC-CCCCCCCceeeeeeCcEEcCCCcce
Q 004901 14 GASNTVFKSGPLFISSKG------IGWKSWKKRWFILTRT-----SLVFFKNDP-SALPQRGGEVNLTLGGIDLNNSGSV 81 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg------~~~k~WKKRWFVL~~~-----~L~yYKd~~-~~~p~~~~~~~l~L~~I~L~~~~sv 81 (724)
.....++++|||+ |+| ...+.|++|||||+++ .|+||++.. +.. +.+.|.|..+..+
T Consensus 13 s~~~~~~~~G~L~--K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~---------~~g~I~L~~~~~~ 81 (150)
T 1wg7_A 13 SQKGGITKHGWLY--KGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKE---------PKGSIFLDSCMGV 81 (150)
T ss_dssp BCSCCCCCEEEEE--ECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSC---------CSEEECTTTCCEE
T ss_pred CCCCCeeEEEEEE--EecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCC---------cCcEEecccCEEE
Confidence 3457789999776 555 3467999999999997 999999987 433 3445666665543
Q ss_pred eec-cCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 82 VVR-EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 82 ~~~-~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
... ..++++|.|... ++++|+|+|++.+|+.+|+.+|+.++...
T Consensus 82 ~~~~~~~~~~F~i~~~--~~r~~~l~A~s~~e~~~Wi~al~~ai~~~ 126 (150)
T 1wg7_A 82 VQNNKVRRFAFELKMQ--DKSSYLLAADSEVEMEEWITILNKILQLN 126 (150)
T ss_dssp CCCCSSCTTEEEEECS--SSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 322 345688887653 35899999999999999999999999743
No 57
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=99.56 E-value=1.1e-14 Score=141.17 Aligned_cols=103 Identities=17% Similarity=0.292 Sum_probs=64.9
Q ss_pred ceEEEeeeeee--------ccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCc
Q 004901 18 TVFKSGPLFIS--------SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKK 88 (724)
Q Consensus 18 ~V~KeG~L~l~--------Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-~~~Kk 88 (724)
.|+++|||+++ |+|...+.|++|||||+++.|+||+++.+......+.+.+.+.++.+. +.. ...++
T Consensus 2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~----~~~~~~~~~ 77 (168)
T 2j59_M 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLID----ISYSETKRK 77 (168)
T ss_dssp -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEE----ECSSSCSCS
T ss_pred CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEE----eccccCCCC
Confidence 47899988865 566678999999999999999999998652211112222222111110 111 23456
Q ss_pred ceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
++|.|... +++|+|+|++++|+++||.+|+.++...
T Consensus 78 ~~F~I~t~---~r~~~l~A~s~~e~~~Wi~ai~~~~~~~ 113 (168)
T 2j59_M 78 NVFRLTTS---DCECLFQAEDRDDMLAWIKTIQESSNLN 113 (168)
T ss_dssp SEEEEECS---SCEEEEECSSHHHHHHHHHHHHHHCCCC
T ss_pred CEEEEEeC---CceEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 78887653 5899999999999999999999998643
No 58
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=99.55 E-value=1.7e-14 Score=133.79 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=67.3
Q ss_pred ceEEEeeeeeecc-C-CCCCCcEEEEEEEeC-CeEEEEcCCCCCC-CCCCc-------eeeeeeCcEEcCCCcce-----
Q 004901 18 TVFKSGPLFISSK-G-IGWKSWKKRWFILTR-TSLVFFKNDPSAL-PQRGG-------EVNLTLGGIDLNNSGSV----- 81 (724)
Q Consensus 18 ~V~KeG~L~l~Kk-g-~~~k~WKKRWFVL~~-~~L~yYKd~~~~~-p~~~~-------~~~l~L~~I~L~~~~sv----- 81 (724)
.++|+|||+ |+ | ..+++|++|||||++ +.|+||++..+.. ...+. .+..+.+.|.+..+...
T Consensus 3 ~~~k~G~L~--K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~ 80 (128)
T 2rlo_A 3 IPIKQSFLL--KRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASG 80 (128)
T ss_dssp CEEEEEEEE--EECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCC
T ss_pred cceeEEEEE--EecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCccccccccccccccc
Confidence 478999666 55 4 257999999999996 6888887622100 00011 12222233333332211
Q ss_pred -ee-ccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 82 -VV-REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 82 -~~-~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
.. .+.++++|.|.. .++++|+|+|+|++|+++||.||+.++..
T Consensus 81 ~~~~~~~~~~~F~I~t--~~~r~~~l~A~s~~e~~~Wi~ai~~~i~~ 125 (128)
T 2rlo_A 81 SAGQAEEENFEFLIVS--STGQTWHFEAASFEERDAWVQAIESQILA 125 (128)
T ss_dssp CCSSCCCCCCCEEEEC--TTSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cccccccCCceEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 00 124567787753 24699999999999999999999999863
No 59
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=129.73 Aligned_cols=98 Identities=29% Similarity=0.448 Sum_probs=72.2
Q ss_pred CCCceEEEeeeeeeccC-CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee----ccCCcc
Q 004901 15 ASNTVFKSGPLFISSKG-IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV----REDKKL 89 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg-~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~----~~~Kk~ 89 (724)
+...++++|||+ |++ ...+.|++|||||+++.|+||+++.+..+ .+.|.|..+..... ...+++
T Consensus 7 p~~~~~~~G~L~--K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~---------~g~i~L~~~~v~~~~~~~~~~~~~ 75 (117)
T 2d9y_A 7 GNAPVTKAGWLF--KQASSGVKQWNKRWFVLVDRCLFYYKDEKEESI---------LGSIPLLSFRVAAVQPSDNISRKH 75 (117)
T ss_dssp SSCCCCEEEEEE--EECTTSSSCEEEEEEEEETTEEEEESSTTCCSC---------CEEEECSSCEEEECCTTTTCCCSS
T ss_pred CCCCeeEEEEEE--EeCCCCCCCceEEEEEECCCEEEEECCCCCCCc---------CCEEEeCCeEEEEcCccccCCCcc
Confidence 345789999776 555 35789999999999999999999876553 23344444322111 124557
Q ss_pred eEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 90 ~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
+|.|.. .++++|+|+|+|++|+.+|+.+|+.++.
T Consensus 76 ~F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~~~~ 109 (117)
T 2d9y_A 76 TFKAEH--AGVRTYFFSAESPEEQEAWIQAMGEAAR 109 (117)
T ss_dssp EEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred EEEEEc--CCCcEEEEEcCCHHHHHHHHHHHHHHHh
Confidence 887753 3469999999999999999999999875
No 60
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=99.55 E-value=8.1e-15 Score=132.08 Aligned_cols=103 Identities=24% Similarity=0.464 Sum_probs=71.7
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEE-eCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCccee---eccC--Ccce
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFIL-TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVV---VRED--KKLL 90 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL-~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~---~~~~--Kk~~ 90 (724)
..++++|||+ |+|...+.|++||||| .++.|+||+++.+..+.+ .+.+....|.+.....+. .... ++++
T Consensus 3 ~~~~~~G~L~--K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g--~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~ 78 (112)
T 3aj4_A 3 MAFVKSGWLL--RQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIED--KVHMPMDCINIRTGQECRDTQPPDGKSKDCM 78 (112)
T ss_dssp CSCSEEEEEE--EECSSSCCEEEEEEEECTTSEEEEESSTTCCSEEE--EEEHHHHEEEEEEGGGCCSCCCSTTCCGGGE
T ss_pred cceeEEEEEE--eeCCCCCCeeceEEEEeeCCEEEEEcCCCCCCCCc--cccccccceeecccccccccCCCCCCCcCcE
Confidence 3578999655 7777889999999999 889999999987654221 222222234443222211 1222 2568
Q ss_pred EEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 91 fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
|.|.. +++++|+|+|+|++|+++|+.+|+.|..
T Consensus 79 F~i~~--~~~r~~~l~a~s~~e~~~Wi~al~~a~~ 111 (112)
T 3aj4_A 79 LQIVC--RDGKTISLCAESTDDCLAWKFTLQDSRT 111 (112)
T ss_dssp EEEEE--TTSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred EEEEe--cCCcEEEEEeCCHHHHHHHHHHHHHHhh
Confidence 87763 2479999999999999999999998863
No 61
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=99.54 E-value=3.1e-14 Score=135.11 Aligned_cols=101 Identities=22% Similarity=0.342 Sum_probs=72.7
Q ss_pred CCCceEEEeeeeeeccCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----ccCC
Q 004901 15 ASNTVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDK 87 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~--~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-----~~~K 87 (724)
....++++|||+++..+. ..+.|++|||||+++.|+||++..+.. +.+.|.|..+..+.. ...+
T Consensus 13 ~~~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~---------~~g~i~L~~~~v~~~~~~~~~~~~ 83 (148)
T 1u5f_A 13 DLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---------QKGEFAIDGYDVRMNNTLRKDGKK 83 (148)
T ss_dssp GCSSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECTTSCSSTTG
T ss_pred hCCCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcc---------cceEEEcCCcEEEECCCcccCCCC
Confidence 346799999777433211 347999999999999999999987654 233455554432211 2234
Q ss_pred cceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
.++|.|.. .++++|+|+|+|.+++++|+.+|+.++..
T Consensus 84 ~~~F~I~~--~~~r~~~l~a~s~~e~~~Wi~al~~~i~~ 120 (148)
T 1u5f_A 84 DCCFEICA--PDKRIYQFTAASPKDAEEWVQQLKFILQD 120 (148)
T ss_dssp GGEEEEEC--TTSCEEEEECSSHHHHHHHHHHHHHHCC-
T ss_pred ccEEEEEC--CCCcEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 47888764 33699999999999999999999999863
No 62
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=99.54 E-value=6e-15 Score=135.72 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=75.5
Q ss_pred CCCceEEEeeeeeecc----C--CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee--ccC
Q 004901 15 ASNTVFKSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--RED 86 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kk----g--~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~--~~~ 86 (724)
.+..|.|+|||+++.. | ...+.|++|||||+++.|+||+++.+..+.+...+ ...+.|+|..+..... ...
T Consensus 4 ~~~~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~-~~~~~i~L~~~~v~~~~d~~k 82 (122)
T 1dro_A 4 TGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTF-RGEPSYDLQNAAIEIASDYTK 82 (122)
T ss_dssp CCSSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCS-SCCCBCCCSSCCCEECCSSSS
T ss_pred CCCceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCccc-CCCceEECCCCEEEeCCCCCC
Confidence 3456889998875422 1 14789999999999999999999876543211100 0113355544432211 134
Q ss_pred CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 87 Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
++++|.|.. .++++|+|+|++++||++|+.+|+.++..+
T Consensus 83 r~~~F~l~t--~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~~ 121 (122)
T 1dro_A 83 KKHVLRVKL--ANGALFLLQAHDDTEMSQWVTSLKAQSDST 121 (122)
T ss_dssp STTEEEEEC--SSSCEEEEECSSSHHHHHHHHHHHHHHTCC
T ss_pred CCeEEEEEE--cCCCEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 567887763 357999999999999999999999998743
No 63
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=99.53 E-value=3.4e-14 Score=143.72 Aligned_cols=99 Identities=22% Similarity=0.357 Sum_probs=74.2
Q ss_pred CceEEEeeeeeeccCC--CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-----ccCCcc
Q 004901 17 NTVFKSGPLFISSKGI--GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-----REDKKL 89 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~--~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-----~~~Kk~ 89 (724)
..++++|||+++..+. ..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.. ...+++
T Consensus 104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~---------p~g~I~L~~~~~v~~~~~~~~~~k~~ 174 (211)
T 1u5e_A 104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQ---------QKGEFAIDGYDVRMNNTLRKDGKKDC 174 (211)
T ss_dssp SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEECGGGCSSTTGGG
T ss_pred CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCcc---------ceEEEEeCCcEEEEcCCccccCCCCC
Confidence 4699999777543321 468999999999999999999987654 334455555544332 123457
Q ss_pred eEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 90 ~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
+|.|.. .++++|+|+|+|.+++.+|+.+|+.++..
T Consensus 175 ~F~I~t--~~~r~~~l~A~s~~e~~~Wi~aL~~ai~~ 209 (211)
T 1u5e_A 175 CFEICA--PDKRIYQFTAASPKDAEEWVQQLKFILQD 209 (211)
T ss_dssp EEEEEC--SSSCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred EEEEEc--CCCCEEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 888764 33699999999999999999999999863
No 64
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=99.51 E-value=4.8e-14 Score=125.27 Aligned_cols=96 Identities=22% Similarity=0.338 Sum_probs=64.1
Q ss_pred EEeeeeeecc----C--CCCCCcEEEEEEEeCCeEEEEcCCCCCC--CCCCceeeeeeCcEEcCCCcce-e-eccCCcce
Q 004901 21 KSGPLFISSK----G--IGWKSWKKRWFILTRTSLVFFKNDPSAL--PQRGGEVNLTLGGIDLNNSGSV-V-VREDKKLL 90 (724)
Q Consensus 21 KeG~L~l~Kk----g--~~~k~WKKRWFVL~~~~L~yYKd~~~~~--p~~~~~~~l~L~~I~L~~~~sv-~-~~~~Kk~~ 90 (724)
++|||+++.. | ...+.|++|||||+++.|+||+++.+.. ....+... |++..+... . ....++++
T Consensus 1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~-----i~l~~~~~~~~~~~~~~~~~ 75 (106)
T 1btn_A 1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVP-----VSLKEAICEVALDYKKKKHV 75 (106)
T ss_dssp CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCC-----EECTTCEEEECSSCCSSSSE
T ss_pred CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcce-----EECCCCEEEEcccccCCccE
Confidence 4797764430 0 4688999999999999999999876321 00012222 333332211 1 12345678
Q ss_pred EEEEecCCCCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 91 TVLFPDGRDGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 91 fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
|.|.. .++++|+|+|+|++|+++||.+|+.|
T Consensus 76 F~i~~--~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 76 FKLRL--SDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp EEEEC--TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred EEEEe--cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 87763 35799999999999999999999864
No 65
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=99.50 E-value=4.6e-14 Score=147.36 Aligned_cols=110 Identities=22% Similarity=0.291 Sum_probs=74.2
Q ss_pred CCCCceEEEeeeee------eccCCC----CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee
Q 004901 14 GASNTVFKSGPLFI------SSKGIG----WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV 83 (724)
Q Consensus 14 ~~~~~V~KeG~L~l------~Kkg~~----~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~ 83 (724)
.....++|+|||++ .|+|.. +++|++|||||+++.|+|||++...... ....+.+.|.|..+.....
T Consensus 6 ~~~~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~---~~~~p~g~I~L~~~~v~~~ 82 (263)
T 3a8p_A 6 KEQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTE---QNSAPRCALFAEDSIVQSV 82 (263)
T ss_dssp ----CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC---------CCCSEEEECTTCEEEEC
T ss_pred ccCCCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccc---cccCccceEEcCCcEEEEC
Confidence 34567999998883 255554 7899999999999999999986421100 0011334455554332211
Q ss_pred c--cCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004901 84 R--EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (724)
Q Consensus 84 ~--~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap 128 (724)
. ..++++|.|.. .++++|+|+|+|++|+++||.+|+.++...+
T Consensus 83 ~~~~kk~~~F~I~t--~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~~~ 127 (263)
T 3a8p_A 83 PEHPKKEHVFCLSN--SCGDVYLFQATSQTDLENWVTAIHSACASLF 127 (263)
T ss_dssp TTCSSCSSEEEEEC--TTSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEEc--CCCcEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 1 23568888764 2589999999999999999999999997654
No 66
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=99.48 E-value=6.3e-14 Score=154.87 Aligned_cols=104 Identities=19% Similarity=0.238 Sum_probs=75.1
Q ss_pred CCCCceEEEeeeeeec-cCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004901 14 GASNTVFKSGPLFISS-KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~K-kg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fv 92 (724)
...+.+.|+||||++. .|+.++.|+||||||+++.|+||+...... . ..+.|..|.+. .....++++||.
T Consensus 296 ~~~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~~-~----~~~~l~~~~v~----~~~~~~r~~cF~ 366 (407)
T 4h8s_A 296 INRNLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVAG-G----LIQDLDNCSVM----AVDCEDRRYCFQ 366 (407)
T ss_dssp CCCSCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSSC-C----CCBCSSCCEEE----EECCTTCSSEEE
T ss_pred ccCCcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCCC-C----eEEECCceEEE----ECCCCCCCceEE
Confidence 4456789999999764 366678999999999999999998654321 1 12233333322 122356789998
Q ss_pred EEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 93 it~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
|... ...++|+|+|+|++|+.+||.+|+.++.++
T Consensus 367 i~~~-~~~~~~~l~A~s~~e~~~Wi~ai~~a~~~~ 400 (407)
T 4h8s_A 367 ITTP-NGKSGIILQAESRKENEEWICAINNISRQI 400 (407)
T ss_dssp EECT-TSSCCEEEECSSSHHHHHHHHHHHHHHSCC
T ss_pred EEec-CCCceEEEEcCCHHHHHHHHHHHHHHHHHh
Confidence 7642 124789999999999999999999999754
No 67
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=99.48 E-value=9.9e-14 Score=141.77 Aligned_cols=100 Identities=27% Similarity=0.542 Sum_probs=79.9
Q ss_pred CCCceEEEeeeeeeccCCC-----CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcc
Q 004901 15 ASNTVFKSGPLFISSKGIG-----WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKL 89 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~-----~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~ 89 (724)
....++++|||+ |+|.. .+.|++|||||+++.|+||+++.+.. +.+.|.|..+..+.....+++
T Consensus 54 ~~~~~~k~G~L~--K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~---------~~g~I~L~~~~~v~~~~~k~~ 122 (228)
T 3tfm_A 54 SKQEALKQGWLH--NNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEK---------LKGTVEVRSAKEIIDNTNKEN 122 (228)
T ss_dssp SCCCSSEEEEEE--ECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCS---------EEEEEEGGGCSEEEEETTTTS
T ss_pred cCCCcceEEEEE--EECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcc---------eeEEEEcCCCEEeccCCCCCc
Confidence 345688999666 55543 38999999999999999999987644 566788887766555556778
Q ss_pred eEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004901 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (724)
Q Consensus 90 ~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap 128 (724)
+|.|.. .+++|+|+|+|++|+++|+.+|+.++...+
T Consensus 123 ~F~I~t---~~r~~~l~A~s~~e~~~Wv~aL~~~i~~~~ 158 (228)
T 3tfm_A 123 GIDIIM---ADRTFHLIAESPEDASQWFSVLSQVHSSTD 158 (228)
T ss_dssp EEEEEC---SSCEEEEECSSHHHHHHHHHHHHHHHTCCH
T ss_pred EEEEEc---CCcEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence 887764 379999999999999999999999997543
No 68
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=99.45 E-value=5.1e-13 Score=124.13 Aligned_cols=107 Identities=14% Similarity=0.229 Sum_probs=71.2
Q ss_pred EEEeeeeee---ccCCC--CCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCcceEEE
Q 004901 20 FKSGPLFIS---SKGIG--WKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLTVL 93 (724)
Q Consensus 20 ~KeG~L~l~---Kkg~~--~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~-~~Kk~~fvi 93 (724)
.++|+|..+ |.|.. +++|++|||||.|+.|+||+...-........-..+.+.|.|.++...... ..++++|.+
T Consensus 2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~~~e~~~~~~~F~L 81 (126)
T 2dtc_A 2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQLPDDPEHPDIFQL 81 (126)
T ss_dssp CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEECCCCTTSTTEEEE
T ss_pred ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEEecCCCCCCCEEEE
Confidence 468877744 55553 789999999999999999996631110000000013334444443332122 235678888
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
.. ...|.+|+|+|++++++..|+++|+.|+...
T Consensus 82 ~~-~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~~~ 114 (126)
T 2dtc_A 82 NN-PDKGNVYKFQTGSRFHAILWHKHLDDACKSS 114 (126)
T ss_dssp EC-TTSCSEEEEECSSHHHHHHHHHHHHHHHTSC
T ss_pred ee-CCCCCEEEEeCCCHHHHHHHHHHHHHHHhcC
Confidence 73 2358999999999999999999999999743
No 69
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=99.44 E-value=1.9e-13 Score=150.01 Aligned_cols=100 Identities=21% Similarity=0.267 Sum_probs=69.7
Q ss_pred CCceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEE
Q 004901 16 SNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVL 93 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-~~~Kk~~fvi 93 (724)
.+.++|+||||++.+++ .++.|++|||||+++.|+||++ .+.. +.+.|+|..|..... ..++++||.|
T Consensus 275 ~~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~~~---------~~~~i~l~~~~v~~~~~~~r~~~F~i 344 (385)
T 2q13_A 275 RNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDVA---------GGLAMDIDNCSVMAVDCEDRRYCFQI 344 (385)
T ss_dssp CCCSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-SCSS---------CEEEEECTTCEEEEECCTTCSSEEEE
T ss_pred CCCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-CCcC---------CCceEEccceEEEeccccCCCceEEE
Confidence 35789999887443222 2357999999999999999998 3322 223455555443222 2466789987
Q ss_pred EecCCCC-ceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 94 FPDGRDG-RAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 94 t~~~~~g-r~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
... ++ ++|+|+|+|++|+++||.||+.++...
T Consensus 345 ~t~--~~~~~~~l~A~s~~e~~~Wi~ai~~~~~~~ 377 (385)
T 2q13_A 345 TSF--DGKKSSILQAESKKDHEEWICTINNISKQI 377 (385)
T ss_dssp ECT--TSCBCCCEECSSHHHHHHHHHHHHHHHTTC
T ss_pred EeC--CCCeEEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 643 23 899999999999999999999998643
No 70
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=99.43 E-value=3.9e-13 Score=145.73 Aligned_cols=102 Identities=25% Similarity=0.406 Sum_probs=76.4
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEec
Q 004901 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPD 96 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-~~~Kk~~fvit~~ 96 (724)
.++++|||+ |+|+..+.|++|||||+++.|+||+++.+.. +.+.|.|..+..... ...++++|.|...
T Consensus 212 ~~~k~G~L~--K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~---------p~G~I~L~~~~v~~~~~~~~~~~F~I~~~ 280 (347)
T 2r09_A 212 NPDREGWLL--KLGGRVKTWKRRWFILTDNCLYYFEYTTDKE---------PRGIIPLENLSIREVEDPRKPNCFELYNP 280 (347)
T ss_dssp CCCEEEEEE--EECSSSCCEEEEEEEEETTEEEEESSTTCSS---------CSEEEECTTCEEEEECCSSCSSEEEEECS
T ss_pred ccccCCeeE--ecCCCcccceeEEEEEcCCEEEEEcCCCccC---------CcEEEEcCCeEEEEccCCCCCCEEEEEeC
Confidence 468999665 7777789999999999999999999987654 233455555432211 2356678877642
Q ss_pred C-------------------CCCceEEEEeCCHHHHHHHHHHHHHHHhcCCcc
Q 004901 97 G-------------------RDGRAFTLKAETSEDLYEWKTALELALAQAPSA 130 (724)
Q Consensus 97 ~-------------------~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~~ 130 (724)
. ...++|+|+|+|++|+.+|+.+|+.++...|..
T Consensus 281 ~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~~~~~~ 333 (347)
T 2r09_A 281 SHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASISRDPFY 333 (347)
T ss_dssp SSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHHCCHHH
T ss_pred CccccccccccccccccccccCceEEEEECCCHHHHHHHHHHHHHHHhcCCCH
Confidence 1 125899999999999999999999999866543
No 71
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.42 E-value=5.2e-13 Score=146.70 Aligned_cols=98 Identities=23% Similarity=0.392 Sum_probs=73.6
Q ss_pred CCCceEEEeeeeeeccCCCC-CCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce------eeccC-
Q 004901 15 ASNTVFKSGPLFISSKGIGW-KSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV------VVRED- 86 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~-k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv------~~~~~- 86 (724)
....++|+|||+ |+|... +.||+|||||+++.|+||+++.+.. +.+.|.|..+..+ .+...
T Consensus 265 l~~~~~k~G~L~--K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~---------~~G~I~L~~~~~~~~v~~~~~~~~~ 333 (386)
T 3lju_X 265 LSRNYLKEGYME--KTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAF---------ARGEVFIGSKESGYTVLHGFPPSTQ 333 (386)
T ss_dssp SSCCCSEEEEEE--ECCTTSCSCCEEEEEEEETTEEEEESSTTCSB---------CSEEEECCCGGGTCEEEESCCTTCC
T ss_pred cccccceeeeEE--EECCCCCCCCcccEEEEECCEEEEEecCCCcc---------cceEEEeecceeeeeecccCCcccc
Confidence 356689999555 787776 9999999999999999999987765 3344555443321 11111
Q ss_pred C---cceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 87 K---KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 87 K---k~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
+ +++|.|... +|+|+|+|+|++|+++|+.||+.++.+
T Consensus 334 ~~~~~~~F~I~t~---~rty~l~A~s~~e~~~Wi~aL~~~i~~ 373 (386)
T 3lju_X 334 GHHWPHGITIVTP---DRKFLFACETESDQREWVAAFQKAVDR 373 (386)
T ss_dssp SCCSCEEEEEECS---SCEEEEEESSHHHHHHHHHHHHHHHHS
T ss_pred ccCCCcEEEEEeC---CeEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 1 467776542 699999999999999999999999975
No 72
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=99.40 E-value=3.9e-13 Score=140.43 Aligned_cols=102 Identities=24% Similarity=0.331 Sum_probs=69.6
Q ss_pred CCCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCC-------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-
Q 004901 13 PGASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR- 84 (724)
Q Consensus 13 ~~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~-------~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~- 84 (724)
+...+.++++|||+ |+ +.||+|||||+++ .|+||+++.+..... ..+.+.|+|..+..+...
T Consensus 4 ~~~~~~v~k~G~L~--K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~----~~p~g~I~L~~~~~V~~~~ 73 (264)
T 1qqg_A 4 SDGFSDVRKVGYLR--KP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKS----SAPKRSIPLESCFNINKRA 73 (264)
T ss_dssp -----CEEEEEEEE--CT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTC----SCCSEEEEGGGEEEEEEEC
T ss_pred CCCCCCccEEEEEE--EC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccccc----cCcceEEEeeceEEEEecc
Confidence 45667899999666 54 6899999999998 999999876510000 003445666665544322
Q ss_pred -cCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 85 -EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 85 -~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
..++++|.|... +|+|+|+|+|++|+++|+.+|+.++...
T Consensus 74 ~~~~~~~F~I~t~---~rty~l~A~se~e~~~Wi~aL~~~~~~~ 114 (264)
T 1qqg_A 74 DSKNKHLVALYTR---DEHFAIAADSEAEQDSWYQALLQLHNRA 114 (264)
T ss_dssp CSSCSSEEEEEES---SCEEEEECSSHHHHHHHHHHHHHHC---
T ss_pred CCCCCcEEEEEEC---CEEEEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 345577877643 7999999999999999999999998643
No 73
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=99.38 E-value=7.6e-13 Score=138.76 Aligned_cols=105 Identities=16% Similarity=0.254 Sum_probs=72.1
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc--eeeccCCcceEEEEe
Q 004901 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVLFP 95 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~s--v~~~~~Kk~~fvit~ 95 (724)
...++|||| |+|...++|++|||||+++.|+||++..+..+.+.. ..+.+..+.+..... ......+++||.|.+
T Consensus 167 ~p~~~G~L~--k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i-~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~ 243 (291)
T 3tca_A 167 VPELEGALY--LKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLA-CFIQFENVNIYYGIQCKMKYKAPTDHCFVLKH 243 (291)
T ss_dssp CCCCEEEEE--EECTTSSCEEEEEEEECSSEEEECCTTCCSSTTTCE-EEEEGGGCEEEEECSHHHHHCCSSSCEEEEEC
T ss_pred CCceEEEEE--EeCCCCCCceEEEEEEeCCEEEEEecCccccccCce-eeccceeEEEEecCccccccCCCCCeEEEEEc
Confidence 457899777 677778999999999999999999998876654421 111222222211110 011234568898865
Q ss_pred cC---CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 96 DG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 96 ~~---~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.. ...++|||+|+|++++..||.||+.|..
T Consensus 244 ~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~ 276 (291)
T 3tca_A 244 PQIQKESQYIKYLCCDDARTLSQWVMGIRIAKY 276 (291)
T ss_dssp TTCCSCCTTSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence 32 2347899999999999999999998764
No 74
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=99.31 E-value=8.6e-12 Score=118.42 Aligned_cols=105 Identities=13% Similarity=0.260 Sum_probs=75.3
Q ss_pred EEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCC---------CCC----C------------CC------------
Q 004901 20 FKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDP---------SAL----P------------QR------------ 62 (724)
Q Consensus 20 ~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~---------~~~----p------------~~------------ 62 (724)
+|+|||| +++...+.|++|||||+++.|+|++... ... + ..
T Consensus 2 ~k~G~L~--~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l 79 (150)
T 2fjl_A 2 IKNGILY--LEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHL 79 (150)
T ss_dssp CEEEEEE--EEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSS
T ss_pred CcceEEE--eecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcc
Confidence 6899777 5566788999999999999999998221 111 0 00
Q ss_pred ---CceeeeeeCcEEcCCCcceeec---cCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 63 ---GGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 63 ---~~~~~l~L~~I~L~~~~sv~~~---~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
.+-..+..+.|+|..|...... ..++++|.|.+...+.++|+|.|+|.++|.+||++|+.|+..
T Consensus 80 ~E~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~ 149 (150)
T 2fjl_A 80 DENSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQT 149 (150)
T ss_dssp CTTTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cccccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 0001122456777776664332 346688988876666789999999999999999999999864
No 75
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=99.30 E-value=3.4e-12 Score=117.26 Aligned_cols=99 Identities=15% Similarity=0.285 Sum_probs=66.9
Q ss_pred EEeeeeeeccCCCCC-CcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce--------eec--cCCcc
Q 004901 21 KSGPLFISSKGIGWK-SWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV--------VVR--EDKKL 89 (724)
Q Consensus 21 KeG~L~l~Kkg~~~k-~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv--------~~~--~~Kk~ 89 (724)
.+|||.+-|+|+.++ +|++|||||+++.|+||+++.+.. ... +.+.|+++....| ... .+.++
T Consensus 3 ~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~-~~~-----p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~ 76 (117)
T 2rov_A 3 LEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKE-QSN-----PYMVLDIDKLFHVRPVTQTDVYRADAKEIPR 76 (117)
T ss_dssp SEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHH-TTC-----CSEEECGGGEEEEEECCTTTCSSSCTTTGGG
T ss_pred eEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcc-cCC-----ceEEEECcccEEEEEcccccccccccccCCc
Confidence 489776656777777 999999999999999999864320 001 1223333322211 111 22346
Q ss_pred eEEEEecC---CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 90 LTVLFPDG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 90 ~fvit~~~---~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.|.|+... ...++|||.|+|++|+++|+.+|+++|.
T Consensus 77 iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i~ 115 (117)
T 2rov_A 77 IFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKKIP 115 (117)
T ss_dssp EEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHCT
T ss_pred EEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHhc
Confidence 67775432 3358999999999999999999998874
No 76
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.25 E-value=9.8e-12 Score=136.57 Aligned_cols=95 Identities=15% Similarity=0.254 Sum_probs=68.0
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEE--eCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee--ccCCcceEEEE
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFIL--TRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV--REDKKLLTVLF 94 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL--~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~--~~~Kk~~fvit 94 (724)
.+|+|||| |+|...+.|++||||| +++.|+||+++.+.. +.+.|.|.....+.. ...++++|.|.
T Consensus 146 ~~keG~L~--KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~---------p~g~I~L~~~~~~~~~~~~~~~~~f~I~ 214 (386)
T 3lju_X 146 GYREGFLW--KRGRDNGQFLSRKFVLTEREGALKYFNRNDAKE---------PKAVMKIEHLNATFQPAKIGHPHGLQVT 214 (386)
T ss_dssp SEEEEEEE--EECSSSCCEEEEEEEEETTTTEEEEEC-----C---------CSEEEEGGGEEEEECHHHHTSTTCEEEE
T ss_pred ccccccee--eeccccCCceEEEEEEEcCCCEEEEECCCCccC---------cccEEEeeccEEEEcccccCCCceEEEE
Confidence 58999776 8888899999999999 899999999987766 334455555333221 12466777664
Q ss_pred -ecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 95 -PDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 95 -~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
..+...|+|+|+|+|.+++.+|+.+|+.+.
T Consensus 215 ~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~ 245 (386)
T 3lju_X 215 YLKDNSTRNIFIYHEDGKEIVDWFNALRAAR 245 (386)
T ss_dssp EEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred EecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence 223346999999999999999999999874
No 77
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=3.2e-11 Score=112.52 Aligned_cols=99 Identities=18% Similarity=0.339 Sum_probs=68.9
Q ss_pred ceEEEeeeeeec-cCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceEEE
Q 004901 18 TVFKSGPLFISS-KGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLTVL 93 (724)
Q Consensus 18 ~V~KeG~L~l~K-kg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~---~~Kk~~fvi 93 (724)
....+|||-+.+ ++..+|.||+|||+|+++.|+|||++.+.. +. +++.|.|..|. |.+. ..+++.|.+
T Consensus 8 ~pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~--~e-----Pig~I~L~gce-V~pd~~~~~~kf~ikl 79 (137)
T 2ys3_A 8 IPELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAP--GD-----PIQQLNLKGCE-VVPDVNVSGQKFCIKL 79 (137)
T ss_dssp CCCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTT--SC-----CSCCBCTTTCE-EEECCBGGGTBEEEEE
T ss_pred CcchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhcc--CC-----CceEEECCCCE-EeccccccCCceEEEE
Confidence 346778664432 345588999999999999999999988752 11 34445555544 2222 245666544
Q ss_pred -EecCCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 94 -FPDGRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 94 -t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
.|.....++|+|.|+|++++.+||.|++.|-
T Consensus 80 ~iPs~~g~r~y~l~cdsEeqy~~WMaA~rlAs 111 (137)
T 2ys3_A 80 LVPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111 (137)
T ss_dssp EEECSSSEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred EccCCCCceEEEEECCCHHHHHHHHHHHHHhc
Confidence 3422334899999999999999999999775
No 78
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=99.19 E-value=3.5e-11 Score=133.56 Aligned_cols=104 Identities=21% Similarity=0.348 Sum_probs=72.5
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEe-CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE-E
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILT-RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-F 94 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~-~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi-t 94 (724)
..|+|+|||+ |+|+.++.||+|||||+ ++.|+|||++++..+.+ .+++..+.+..|........++++|.| +
T Consensus 4 ~~v~keG~L~--K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~----~i~l~~~~~~~~~~~~~~~~~~~~f~I~~ 77 (446)
T 4ejn_A 4 VAIVKEGWLH--KRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQR----EAPLNNFSVAQCQLMKTERPRPNTFIIRC 77 (446)
T ss_dssp CCEEEEEEEE--EEETTTTEEEEEEEEEETTSBEEEESSCC-----------CCCGGGBCTTCEEEEECSSSTTEEEEEE
T ss_pred ceEEEEeeEE--eeccccccccceEEEEeeCCEEEEEecCCCCCccC----cccccCccccceeecCCCCCCCceeEEEc
Confidence 4699999555 88989999999999998 89999999988765433 235555555554443344455667766 4
Q ss_pred ecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 95 PDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 95 ~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
+........+|++++.+++.+|+.||+.++..
T Consensus 78 ~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i~~ 109 (446)
T 4ejn_A 78 LQWTTVIERTFHVETPEEREEWTTAIQTVADG 109 (446)
T ss_dssp EETTEEEEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred CCCceeeeeEEecCCHHHHHHHHHHHHhhhhh
Confidence 43222233489999999999999999999764
No 79
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=99.17 E-value=1.9e-11 Score=128.12 Aligned_cols=107 Identities=26% Similarity=0.380 Sum_probs=68.4
Q ss_pred CCCCceEEEeeeeee-----ccC-----CCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcce-e
Q 004901 14 GASNTVFKSGPLFIS-----SKG-----IGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSV-V 82 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~-----Kkg-----~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv-~ 82 (724)
.....|.|+|||..+ +++ ...+.|+++||||+++.|+||++........ ...+.+.|.|..+... .
T Consensus 6 ~~~~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~---~~~p~~~I~L~ga~v~~a 82 (279)
T 3a8n_A 6 AAQGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDH---NSVPKHAVWVENSIVQAV 82 (279)
T ss_dssp ----CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC-----------CCCSSCCBCCSCEECCC
T ss_pred ccCCceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEeccccccccc---ccCCCceEeccCcEEEec
Confidence 345668999988643 111 1368999999999999999999976432100 0012223444433322 1
Q ss_pred e-ccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 83 V-REDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 83 ~-~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
. ...++++|.+.. .++++|+|+|++.+||+.|+.+|+.++.
T Consensus 83 ~d~~kKk~vF~L~t--~~g~~yLFQA~s~eEm~~WI~aI~~a~~ 124 (279)
T 3a8n_A 83 PEHPKKDFVFCLSN--SLGDAFLFQTTSQTELENWITAIHSACA 124 (279)
T ss_dssp TTSSSSCSCCCEEE--TTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred cccCCCCcEEEEEc--CCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence 1 234556777754 4689999999999999999999999986
No 80
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=99.10 E-value=3.3e-10 Score=117.40 Aligned_cols=107 Identities=23% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc--eeeccCCcceEEE
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVL 93 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~s--v~~~~~Kk~~fvi 93 (724)
+.....+|||| +++.+.++|+||||+|+++.|+||+...... .+.....+.+..+++-.... ...+..+++||.|
T Consensus 129 s~~P~~~G~L~--~ke~~~K~WkkRyfvLr~sgLy~~~k~~sk~-~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~i 205 (256)
T 3hk0_A 129 SSSPEIQGFLH--VKELGKKSWKKLYVCLRRSGLYCSTKGTSAA-PRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCI 205 (256)
T ss_dssp TSCEEEEEEEE--EECTTSSCEEEEEEEEETTEEEEESSTTCCC-GGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEE
T ss_pred CCCCcceeEEE--EecCCCCcceEEEEEEeCCEEEEEecCCCCc-cccceEEEEcCCCEEEEecccccccCCCCCCEEEE
Confidence 34467899887 5555578999999999999999998665332 22222223455554432211 1112344689988
Q ss_pred EecCC---CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 94 FPDGR---DGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 94 t~~~~---~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.+... ...+|||+|++++++.+|+.||+.|..
T Consensus 206 k~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 206 KPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp EETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred EcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 76322 134799999999999999999998875
No 81
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1e-09 Score=100.56 Aligned_cols=103 Identities=17% Similarity=0.158 Sum_probs=72.3
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCC------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccC-
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRT------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRED- 86 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~------~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~- 86 (724)
.-...++|+||||+.-.+...+.|+||||||... .|-||.++........ +-+.|.|..|.++.+...
T Consensus 7 ~m~e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~-----~rrVIrLsdCisV~~~~~e 81 (127)
T 2d9w_A 7 GMGDGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEA-----ARKVIRLSDCLRVAEAGGE 81 (127)
T ss_dssp CSCCCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSC-----CEEEECGGGEEEEEECCSC
T ss_pred cccCccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCC-----CceEEEhhhCCeEecccCc
Confidence 3456789999999988744445699999999863 8999998765432111 335577777766544322
Q ss_pred -----CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 87 -----KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 87 -----Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
..+.|.+.+. .++|+|.|++ .|+.+||.+|..++-
T Consensus 82 ~~~pk~~~aF~l~T~---er~~~laAe~-~E~~~Wi~~ic~~aF 121 (127)
T 2d9w_A 82 ASSPRDTSAFFLETK---ERLYLLAAPA-AERGDWVQAICLLAF 121 (127)
T ss_dssp SSSCSSCEEEEEEES---SCEEEEEECH-HHHHHHHHHHHHHHT
T ss_pred cCCCCcceEEEEEeC---CcEEEEEeCc-HHHHHHHHHHHHHhc
Confidence 2244544332 6999999996 499999999998863
No 82
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=99.02 E-value=6.8e-10 Score=116.42 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=67.4
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcc--eeeccCCcceEEEE
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGS--VVVREDKKLLTVLF 94 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~s--v~~~~~Kk~~fvit 94 (724)
....++|||| +++.+.++|+||||+|+++.|+||+......+ +.....+.+.++++-.... ...+..+++||.|.
T Consensus 156 ~~pe~~G~L~--~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~-r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik 232 (281)
T 4gmv_A 156 TVPEIEGVLW--LKDDGKKSWKKRYFLLRASGIYYVPKGKAKVS-RDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLK 232 (281)
T ss_dssp CCCCCEEEEE--EECTTSSCEEEEEEEECSSCEEEC----------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEE
T ss_pred CCCccEEEEE--EECCCCCCCeEEEEEEeCCEEEEEeCCCCCcc-ccceEEEEcCCcEEEEecccccccCCCCCcEEEEe
Confidence 3456899777 55555689999999999999999986543322 2222223444444332111 01123557899987
Q ss_pred ecC---CCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 95 PDG---RDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 95 ~~~---~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
+.. ....+|||+|++++++..|+.||+-+..
T Consensus 233 ~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 233 HPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp CTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 532 2346899999999999999999998875
No 83
>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}
Probab=98.97 E-value=1.6e-09 Score=102.43 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=67.5
Q ss_pred eEEEeeeeee-ccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEE-ec
Q 004901 19 VFKSGPLFIS-SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLF-PD 96 (724)
Q Consensus 19 V~KeG~L~l~-Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit-~~ 96 (724)
..-.|||-+. -++...|+||+||||+++..|+|||++.+.. +.+...+.|+||.+.+... ....|+.+.+. +.
T Consensus 26 PeL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~--geP~~~inLrGCEVtPDVn---va~~Kf~ikL~ip~ 100 (165)
T 4bbk_A 26 PKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQ--GEPIEKLNLRGCEIVPDVN---VSGRKFGIKLLIPV 100 (165)
T ss_dssp CCEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTT--SCCSEEEECTTCEEEEEEE---TTTTEEEEEEEEEE
T ss_pred hhhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhc--CCCceEEecCccEEecccc---cccceeeEEEecCC
Confidence 3466877433 3566699999999999999999999988754 4555556666666554222 13455555443 32
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 97 ~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
......++|.|+|+.++.+||.|++-|-.
T Consensus 101 ~~gm~e~~LrcdsE~QYa~WMAAcrLAsk 129 (165)
T 4bbk_A 101 ADGMNEVYLRCDHEDQYARWMAACILASK 129 (165)
T ss_dssp TTEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CCcceeeeeecCCHHHHHHHHHHhhhccc
Confidence 22345899999999999999999997753
No 84
>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*
Probab=98.95 E-value=2.2e-09 Score=102.67 Aligned_cols=102 Identities=17% Similarity=0.267 Sum_probs=72.2
Q ss_pred eEEEeeeeee-ccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE-Eec
Q 004901 19 VFKSGPLFIS-SKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL-FPD 96 (724)
Q Consensus 19 V~KeG~L~l~-Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi-t~~ 96 (724)
..-.+||-+. -++...|+||+||||++++.|+|||++.+.. +.+...+.|+||.+.+...+ ...||.+.+ .|.
T Consensus 47 PeL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~--geP~~~I~LrGCEVtpDVnv---a~~Kf~IkL~vP~ 121 (173)
T 4f7h_A 47 PELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESS--GTPAHQMNLRGCEVTPDVNI---SGQKFNIKLLIPV 121 (173)
T ss_dssp TCEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCS--SCCSEEEECTTCEEEEEEET---TTTEEEEEEEEEE
T ss_pred hhhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhc--CCCceEEecCceEEeccccc---cccceeEEEeccC
Confidence 3456877433 3566699999999999999999999988753 44555556666666543221 344554433 343
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 97 GRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 97 ~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
......|+|.|+++..+.+||.|++-|-.
T Consensus 122 ~~gm~e~~Lrcd~E~qya~WMAAcrLAsk 150 (173)
T 4f7h_A 122 AEGMNEIWLRCDNEKQYAHWMAACRLASK 150 (173)
T ss_dssp TTEEEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred CCCcceeeeecCCHHHHHHHHHHhhhhcc
Confidence 33457899999999999999999997753
No 85
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=98.94 E-value=2.4e-09 Score=101.62 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=71.4
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (724)
.....|++.|+|+++ +|. .|++|||+|+.+.+.||-++.... ..+.|.++.+..+....+ +.|+|.
T Consensus 47 ~~ge~Ilk~G~v~Kr-kGl---~~kkR~liLT~~PrL~Yvdp~~~~---------~KGeIpls~~l~ve~k~~-~~F~I~ 112 (151)
T 1w1g_A 47 VENNLILKMGPVDKR-KGL---FARRRQLLLTEGPHLYYVDPVNKV---------LKGEIPWSQELRPEAKNF-KTFFVH 112 (151)
T ss_dssp TTTCCEEEEEEEEEE-ETT---EEEEEEEEEETTTEEEEEETTTTE---------EEEEECCCTTCEEEESSS-SEEEEE
T ss_pred CCCCcEEEEEEEEec-ccC---cceeEEEEEcCCceEEEEcCcccc---------ccceEecCCCeeEEEcCC-CEEEEE
Confidence 367789999988843 342 399999999999888888876543 455688887666555443 344555
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
++ +|+|+|.+. ...+++|+.||+.++..
T Consensus 113 Tp----~RtY~~~d~-~~~AqeWv~aI~~~~~~ 140 (151)
T 1w1g_A 113 TP----NRTYYLMDP-SGNAHKWCRKIQEVWRQ 140 (151)
T ss_dssp ET----TEEEEEECT-TSCHHHHHHHHHHHHHH
T ss_pred CC----CceEEEEcC-ccCHHHHHHHHHHHHHH
Confidence 65 699999997 88999999999999863
No 86
>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.58 E-value=1.8e-07 Score=85.68 Aligned_cols=98 Identities=16% Similarity=0.233 Sum_probs=73.7
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc--------
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-------- 85 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~-------- 85 (724)
+.++.++|+| |+...+...+.|||+|++|+...+.+|+++.... ..+.|.|.....+....
T Consensus 3 ~~~s~vlkeG--W~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~~---------~ykeIpL~eIl~v~~~~~~~~l~~~ 71 (125)
T 2coa_A 3 SGSSGTLREG--WVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNR---------YYKEIPLSEILTVESAQNFSLVPPG 71 (125)
T ss_dssp CCCCSCSEEE--EEEECCSSSCCCEEEEEEECSSEEEEESSSSCSS---------CSEEEETTTCCEEEESCCCSSSCTT
T ss_pred CCCCceeecc--eEEEEccCCccccceeeEecCCeEEEEecCCCCc---------eeeeeehhHeecccccccccccCCC
Confidence 5678899999 6667777788999999999999999999987655 34445555544443321
Q ss_pred CCcceEEEEecCCCCceEEEEeC---C--------HHHHHHHHHHHHHHHh
Q 004901 86 DKKLLTVLFPDGRDGRAFTLKAE---T--------SEDLYEWKTALELALA 125 (724)
Q Consensus 86 ~Kk~~fvit~~~~~gr~y~fqAd---S--------eeE~~eWi~AL~~ai~ 125 (724)
...+||.|... ..+||++++ . .+.+..|..||+.|+.
T Consensus 72 ~~~hcFEi~T~---~~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALm 119 (125)
T 2coa_A 72 TNPHCFEIVTA---NATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALM 119 (125)
T ss_dssp SCCEEEEEECS---SCCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred CCCceEEEEeC---CeEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhcc
Confidence 23488888653 789999984 1 2569999999999985
No 87
>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=6.8e-07 Score=82.12 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=70.7
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--------c
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--------E 85 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~--------~ 85 (724)
..++.|+|+| |+-..+..-+.|||+|++|+...|.+|+++.... ....|.|.....+.+. .
T Consensus 3 ~~~s~vlkeG--WmVH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k---------~ykeIpLseIL~v~~~~~~~~~~~~ 71 (129)
T 2d9z_A 3 SGSSGMVKEG--WMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSK---------YYKEIPLSEILRISSPRDFTNISQG 71 (129)
T ss_dssp SCCTTSEEEE--EEEEEESSCCCCEEEEEEEESSCEEEESCSSCCS---------CCCEECTTTCCEECCTTCCCCSSSC
T ss_pred CCCCceeecc--eEEEEccCCccccceeeEecCCeEEEEecCCCCc---------eeceeeHHHhcccccccCccccCCC
Confidence 4678899999 5445555567899999999999999999976654 2233444433332221 1
Q ss_pred CCcceEEEEecCCCCceEEEEeCC---------------HHHHHHHHHHHHHHHh
Q 004901 86 DKKLLTVLFPDGRDGRAFTLKAET---------------SEDLYEWKTALELALA 125 (724)
Q Consensus 86 ~Kk~~fvit~~~~~gr~y~fqAdS---------------eeE~~eWi~AL~~ai~ 125 (724)
...+||.+.. ...+||+.++. .+.+..|..||+.|+.
T Consensus 72 ~~phcFEi~T---~~~~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm 123 (129)
T 2d9z_A 72 SNPHCFEIIT---DTMVYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM 123 (129)
T ss_dssp SCCCSEEEEC---SSCEEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEE---CCEEEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence 2338898864 37899998853 6899999999999986
No 88
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.69 E-value=0.00063 Score=62.75 Aligned_cols=106 Identities=20% Similarity=0.310 Sum_probs=69.6
Q ss_pred CCCCceEEEeee-eeecc-----CCCCCCcEEEEEEEeC------CeEEEEcCCCCCCCCCCceeeeeeCc-EEcCCCcc
Q 004901 14 GASNTVFKSGPL-FISSK-----GIGWKSWKKRWFILTR------TSLVFFKNDPSALPQRGGEVNLTLGG-IDLNNSGS 80 (724)
Q Consensus 14 ~~~~~V~KeG~L-~l~Kk-----g~~~k~WKKRWFVL~~------~~L~yYKd~~~~~p~~~~~~~l~L~~-I~L~~~~s 80 (724)
...-.+.|+|.| |.... ......|+|+|++|+. -.|-||..++..+|+.+. ++.. +.+..++.
T Consensus 13 ~~~~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~i----~cs~I~EVR~tt~ 88 (136)
T 1v5m_A 13 VELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSI----PLSAIIEVRTTMP 88 (136)
T ss_dssp CCSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCE----ETTTCCBCCCCCC
T ss_pred cccceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCcccc----chhhhhhhhhccc
Confidence 344568999966 33321 2356789999999964 257788777766654422 2222 23333333
Q ss_pred eeeccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 81 VVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 81 v~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
... .++-+.|++.. .++..|+|.|.++.+++.|+..|+..+..
T Consensus 89 LEm-PD~~nTFVlK~--~n~~eyi~ea~d~~q~~sWla~Ir~C~~~ 131 (136)
T 1v5m_A 89 LEM-PEKDNTFVLKV--ENGAEYILETIDSLQKHSWVADIQGCVDS 131 (136)
T ss_dssp SSS-CCCTTEECCBC--TTSCBEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred ccc-CCccceEEEEe--cCCcEEEEEcCCHHHHHHHHHHHHhhcCC
Confidence 222 23556788764 45669999999999999999999988763
No 89
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.66 E-value=7.1e-05 Score=76.01 Aligned_cols=41 Identities=24% Similarity=0.605 Sum_probs=33.1
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCC
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSA 58 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~ 58 (724)
...+.++|||+ |+|+..++|++|||||+++.|.||+.....
T Consensus 18 ~~~~~~~g~l~--~~~~~~~~w~~rw~vl~~~~~~~~~~~~~~ 58 (228)
T 3tfm_A 18 PGSPYFHSFLY--MNGGLMNSWKRRWCVLKDETFLWFRSKQEA 58 (228)
T ss_dssp ---CCEEEEEE--ECCTTTCCCEEEEEEEETTEEEEESSCCCS
T ss_pred CCCCceEEEEe--ecCcccccceEEEEEEeCCEEEEeccCCCc
Confidence 34568899665 789899999999999999999999976543
No 90
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=97.37 E-value=0.00059 Score=67.20 Aligned_cols=104 Identities=14% Similarity=0.216 Sum_probs=65.2
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCC---CceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQR---GGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~---~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (724)
...+++|.|.++. + .+.|+.+|++|-.+.|+|-.-........ .....+.+..+.+.. ...+++.+|+|
T Consensus 69 R~Ll~eG~L~~k~-~--~~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre-----~a~d~~~~fli 140 (185)
T 2lg1_A 69 KKLVRDGSVFLKN-A--AGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVRE-----VAHEEKGLFLI 140 (185)
T ss_dssp SCEEEEEEEEEEC-T--TCCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEEC-----CSSCSSEEEEE
T ss_pred CceeeeceEEEec-c--CCCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEec-----cCCCCCeEEEE
Confidence 5789999885332 1 22589999999999887764322111000 000112222222222 12355677787
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap 128 (724)
.......+.|.|+|.|..+++.|+.+|+.|+...|
T Consensus 141 ~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~~ 175 (185)
T 2lg1_A 141 SMGMTDPEMVEVHASSKEERNSWIQIIQDTINTLN 175 (185)
T ss_dssp CCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhCC
Confidence 65433457999999999999999999999997654
No 91
>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}
Probab=97.18 E-value=0.00094 Score=66.93 Aligned_cols=99 Identities=20% Similarity=0.350 Sum_probs=61.0
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCC-------eEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcc
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRT-------SLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKL 89 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~-------~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~ 89 (724)
+.++.|| +.+.+. .|.||+|||||+.- .|..|||.++.........++.|..|.=-... ..-+.+++
T Consensus 7 ~~~v~eg--~vk~r~--~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g--~~ldk~s~ 80 (224)
T 3ml4_A 7 EAALVEG--QVKLRD--GKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPA--LPYEGLAH 80 (224)
T ss_dssp CCCSEEE--EEEEC-----CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEE--EEETTEEE
T ss_pred cceeEEE--eeeeec--CCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCcccc--ccccCccc
Confidence 4577889 433332 34799999999861 78899998775332333444555443211111 11123333
Q ss_pred eE-EEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 90 LT-VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 90 ~f-vit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.. +|+. ..++.|.+++.+.+.+|-..|+..+.
T Consensus 81 TlAIIc~----d~~~vLAFds~e~l~~W~~~l~~slG 113 (224)
T 3ml4_A 81 TLAIICL----SQAVMLGFDSHEAMCAWDTRIRYALG 113 (224)
T ss_dssp EEEEEES----SCEEEEECSSHHHHHHHHHHHHHHTS
T ss_pred EEEEEec----CcEEEEEeCCHHHHHHHHHHHhhccC
Confidence 33 4443 46789999999999999999988664
No 92
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=96.98 E-value=0.0064 Score=56.58 Aligned_cols=86 Identities=15% Similarity=0.276 Sum_probs=62.2
Q ss_pred cEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEeCCHHHHHHH
Q 004901 37 WKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEW 116 (724)
Q Consensus 37 WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eW 116 (724)
-+-|||+|-.+.|.|.+-..... ...-...+++.++.+..... ....+++|.|+. .....+.|.|.|.+|+++|
T Consensus 44 ~~eR~l~LF~~~Ll~~s~~~~~~-~f~~kgklPL~g~~V~~~ed---~~~~~~aFeI~g--~~~~~i~v~~~s~eE~~~W 117 (132)
T 1v61_A 44 KEERYFLLFSSVLIMLSASPRMS-GFMYQGKIPIAGMVVNRLDE---IEGSDCMFEITG--STVERIVVHCNNNQDFQEW 117 (132)
T ss_dssp CCEEEEEECSSCEEEEECSSSSS-CCEEEEEECTTTCBCSTTCS---SSSSCCCEEEEC--SSSCEEEECCCCSHHHHHH
T ss_pred ceEEEEEEcCCeEEEEEecCCCc-eEEEEEEEecceeEEEeccc---cccCccEEEEec--CCCceEEEEeCCHHHHHHH
Confidence 37899999999998887643211 11223456777777765321 134568898884 3457899999999999999
Q ss_pred HHHHHHHHhcCC
Q 004901 117 KTALELALAQAP 128 (724)
Q Consensus 117 i~AL~~ai~~ap 128 (724)
+.+|+.++..||
T Consensus 118 l~~L~~~i~~~~ 129 (132)
T 1v61_A 118 MEQLNRLTKSGP 129 (132)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHhhcc
Confidence 999999998776
No 93
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=96.93 E-value=0.0045 Score=66.78 Aligned_cols=104 Identities=17% Similarity=0.207 Sum_probs=67.4
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCC--------------ceeeeeeCcEEcCCCcce
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--------------GEVNLTLGGIDLNNSGSV 81 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~--------------~~~~l~L~~I~L~~~~sv 81 (724)
....+++|.|... .. .+.|+.|||.|-.+.|.|.+.......-.. ....+++..+.+..
T Consensus 256 ~r~li~eG~l~~~--~~-~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e---- 328 (377)
T 3p6a_A 256 KKKLVHEGPLTWR--VT-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTRE---- 328 (377)
T ss_dssp TSCEEEEEEEEEE--SS-SSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEE----
T ss_pred cceEEEECCcEEE--ec-CCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhccc----
Confidence 3568999977422 21 236899999999999999885432110000 00123333333322
Q ss_pred eeccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 82 ~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
...+.+.+|++.........|.|+|.|.++++.|+..|+.++...
T Consensus 329 -~~~~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~~~ 373 (377)
T 3p6a_A 329 -VATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSL 373 (377)
T ss_dssp -CTTCTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHHTC
T ss_pred -cccccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHHhc
Confidence 223455667776543456789999999999999999999999754
No 94
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=96.82 E-value=0.0041 Score=70.88 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=66.3
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCC--------------ceeeeeeCcEEcCCCcce
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG--------------GEVNLTLGGIDLNNSGSV 81 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~--------------~~~~l~L~~I~L~~~~sv 81 (724)
....+++|.|.. +.. ...|+.|||+|-.+.|.|.+.+.....-.. -...+++..+.+..
T Consensus 409 ~R~LI~eG~l~~--~~~-~~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e---- 481 (536)
T 3odw_A 409 KKKLVHEGPLTW--RVT-KDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTRE---- 481 (536)
T ss_dssp TSCEEEEEEEEE--ESC-C---CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEE----
T ss_pred cceeeeecceEE--Eec-CCCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeec----
Confidence 466999997642 221 235899999999999999885433110000 00123334443332
Q ss_pred eeccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCCc
Q 004901 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAPS 129 (724)
Q Consensus 82 ~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap~ 129 (724)
...+.+.+|++.........|.|+|.|.+|++.|+..|+.+|..+..
T Consensus 482 -~~~d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~~~~~ 528 (536)
T 3odw_A 482 -VATDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAGSLKV 528 (536)
T ss_dssp -CTTCTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHHTSCC
T ss_pred -ccccCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHHhCCC
Confidence 22345566777654345689999999999999999999999986644
No 95
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=96.78 E-value=0.0061 Score=66.85 Aligned_cols=105 Identities=21% Similarity=0.230 Sum_probs=65.7
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCC--------C------CceeeeeeCcEEcCCCcce
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ--------R------GGEVNLTLGGIDLNNSGSV 81 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~--------~------~~~~~l~L~~I~L~~~~sv 81 (724)
....+++|.|.. ++. .+.|+.|||+|-.+.|.|.+........ + .-...+++..+.+..
T Consensus 292 ~r~li~eG~l~~--~~~-~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~---- 364 (418)
T 3t06_A 292 TRKMIHEGPLTW--RIS-KDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRS---- 364 (418)
T ss_dssp GSCEEEEEEEEE--CCB-TTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEE----
T ss_pred cceeEEeceEEE--EeC-CCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceecc----
Confidence 366899997653 221 2358999999999999998854321100 0 001123344444432
Q ss_pred eeccCCcceEEEEecCCC-CceEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004901 82 VVREDKKLLTVLFPDGRD-GRAFTLKAETSEDLYEWKTALELALAQAP 128 (724)
Q Consensus 82 ~~~~~Kk~~fvit~~~~~-gr~y~fqAdSeeE~~eWi~AL~~ai~~ap 128 (724)
...+.+.|+++...... .+.|.|+|.|.++++.|+.+|+.+++.++
T Consensus 365 -~~~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~~~ 411 (418)
T 3t06_A 365 -VATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNAH 411 (418)
T ss_dssp -CSSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHTC-
T ss_pred -ccccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcCc
Confidence 12344455665532222 27999999999999999999999998553
No 96
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=96.54 E-value=0.022 Score=51.46 Aligned_cols=102 Identities=18% Similarity=0.094 Sum_probs=59.9
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec--cCCcceEE
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR--EDKKLLTV 92 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~--~~Kk~~fv 92 (724)
++-.++++|.|..--.. ..+.=+++||.|-++.|.|-+-.... .+. .. ....+.+.....+... ..-+.+|.
T Consensus 4 pgR~lv~eG~l~el~~~-~~k~~~~v~~FLfND~Ll~a~~~~~~---~~~-~~-~~~~~~L~~~~v~d~~d~~~~~n~f~ 77 (113)
T 1zc3_B 4 PGQYLVYNGDLVEYEAD-HMAQLQRVHGFLMNDCLLVATWLPQR---RGM-YR-YNALYPLDRLAVVNVKDNPPMKDMFK 77 (113)
T ss_dssp -CCCEEEEEEEEEEETT-TCCEEEEEEEEEESSEEEEEEEECCT---TSC-EE-EEEEEETTTCEEEEECCBTTBSSEEE
T ss_pred CCeEEEEeCcEEEEccc-cCCCCccEEEEecCCEEEEEEEeccC---ccc-EE-EEEEEEcccCEEEECCCCcccceEEE
Confidence 45568899966422111 11223568999999988887764321 111 11 1112344432222111 12345565
Q ss_pred EEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 93 LFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 93 it~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
|... .+.+.|+|+|..|..+|+.+|++++.
T Consensus 78 i~~~---~~s~~~~aes~~eK~~Wl~~~~~a~~ 107 (113)
T 1zc3_B 78 LLMF---PESRIFQAENAKIKREWLEVLEETKR 107 (113)
T ss_dssp EEET---TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEeC---CceEEEEcCCHHHHHHHHHHHHHHHH
Confidence 5532 57899999999999999999999985
No 97
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=96.43 E-value=0.011 Score=64.91 Aligned_cols=100 Identities=17% Similarity=0.239 Sum_probs=61.2
Q ss_pred CCCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004901 14 GASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (724)
......+++|.|..... +.|+.|||.|-.+.|.|.+-..... ..-...+++..+.+... .....++.|.+
T Consensus 239 ~~~r~li~~g~l~~~~~----~~~~~r~~fLF~d~Ll~~k~~~~~~--y~~k~~i~L~~l~v~~~----~~~~~~~~f~i 308 (434)
T 3mpx_A 239 QPGREFLKEGTLMKVTG----KNRRPRHLFLMNDVLLYTYPQKDGK--YRLKNTLAVANMKVSRP----VMEKVPYALKI 308 (434)
T ss_dssp CTTCCEEECCEEEEEET----TEEEEEEEEEESSEEEEEEECTTSC--EEEEEEEEC-----CCC----CCTTSCSEEEE
T ss_pred cCCcceEecceEEEEeC----CCceEEEEEEECCEEEEEEecCCCe--EEEEEEEEcCCcEEEec----CCCCCCeeEEE
Confidence 34556899997753321 3489999999999999998543211 01112233333433321 11234566776
Q ss_pred EecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 94 FPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 94 t~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
.. ..+.|+|+|.|.+++..|+.+|+.+|..
T Consensus 309 ~~---~~~~~~l~a~s~~ek~~W~~~i~~ai~e 338 (434)
T 3mpx_A 309 ET---SESCLMLSASSCAERDEWYGCLSRALPE 338 (434)
T ss_dssp EC---SSCEEEEECSSHHHHHHHHHHHHHC---
T ss_pred ec---CCeEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 53 2578999999999999999999999964
No 98
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=96.41 E-value=0.02 Score=61.55 Aligned_cols=104 Identities=21% Similarity=0.263 Sum_probs=63.6
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCC--------CCCc------eeeeeeCcEEcCCCcce
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALP--------QRGG------EVNLTLGGIDLNNSGSV 81 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p--------~~~~------~~~l~L~~I~L~~~~sv 81 (724)
....+++|.|.. +. ..+.|+.|||.|-.+.|.|.+....... .+.. ...+++..+.+..
T Consensus 250 ~R~li~~G~l~~--~~-~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~---- 322 (368)
T 1xcg_A 250 TRKMIHEGPLTW--RI-SKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRS---- 322 (368)
T ss_dssp GSCEEEEEEEEE--CC-SSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEE----
T ss_pred cceEEeecceEe--ee-cCCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeec----
Confidence 456899996642 22 2345899999999999998876432100 0000 1122333333222
Q ss_pred eeccCCcceEEEEecCC-CCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 82 VVREDKKLLTVLFPDGR-DGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 82 ~~~~~Kk~~fvit~~~~-~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
...+++.|+++..... ....|.|+|.|.++++.|+.+|+.++..|
T Consensus 323 -~~~~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~a 368 (368)
T 1xcg_A 323 -VATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRNA 368 (368)
T ss_dssp -CSSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred -ccCCCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhcC
Confidence 1133444555554211 13789999999999999999999998643
No 99
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=96.30 E-value=0.01 Score=64.30 Aligned_cols=105 Identities=17% Similarity=0.212 Sum_probs=64.9
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCC------------CCCC--ceeeeeeCcEEcCCCcce
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSAL------------PQRG--GEVNLTLGGIDLNNSGSV 81 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~------------p~~~--~~~~l~L~~I~L~~~~sv 81 (724)
....+++|.|... .. .+.++.|||.|-.+.|.|-+-..+.. +.++ -...+++..+.+..
T Consensus 254 ~R~li~eG~l~~~--~~-~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~---- 326 (385)
T 1txd_A 254 KRKMIHEGPLVWK--VN-RDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQ---- 326 (385)
T ss_dssp GSCEEEEEEEEEE--SS-SSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEE----
T ss_pred cceEEEECcEEEE--cC-CCCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceecccccccc----
Confidence 3568999976532 21 24578999999999998887543210 0000 00112222222221
Q ss_pred eeccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcCC
Q 004901 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQAP 128 (724)
Q Consensus 82 ~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ap 128 (724)
...+.+.+|++.......+.|.|+|.|.++++.|+.+|+.++....
T Consensus 327 -~~~d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~ 372 (385)
T 1txd_A 327 -VATDNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVK 372 (385)
T ss_dssp -CCC-CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred -cccCCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 1123456677765433457899999999999999999999997543
No 100
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=96.21 E-value=0.038 Score=58.07 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=62.4
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCcee----eeeeCcEEcCCCcceeeccCCcceEEE
Q 004901 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEV----NLTLGGIDLNNSGSVVVREDKKLLTVL 93 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~----~l~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (724)
..++.|.+.........+.++.|||.|-.+.|.|-|...... +...+ .+++..+.+.. .....+..|.+
T Consensus 202 ~li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~--~~~~y~~k~~i~l~~~~v~e-----~~~~~~~~F~i 274 (311)
T 1nty_A 202 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSS--GRSKYLYKSKLFTSELGVTE-----HVEGDPCKFAL 274 (311)
T ss_dssp CEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTT--CCEEEEEEEEEEGGGEEEEC-----CCTTCTTEEEE
T ss_pred CceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCC--CCceeEEeeeeeccceeeEE-----ccCCCCceEEE
Confidence 466777554332222245679999999999999987643221 11111 12233333322 11233456766
Q ss_pred EecC--CCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 94 FPDG--RDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 94 t~~~--~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
.... ..+..|.|+|.|.++++.|+.+|+.++..
T Consensus 275 ~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~e 309 (311)
T 1nty_A 275 WVGRTPTSDNKIVLKASSIENKQDWIKHIREVIQE 309 (311)
T ss_dssp EESSSCCTTTCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCCceEEEECCCHHHHHHHHHHHHHHHhh
Confidence 5421 23568999999999999999999999874
No 101
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=95.90 E-value=0.046 Score=58.63 Aligned_cols=109 Identities=11% Similarity=0.091 Sum_probs=62.6
Q ss_pred CceEEEeeeeeecc--CC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCC-CceeeeeeCcEEcCCCcceeeccCCcceEE
Q 004901 17 NTVFKSGPLFISSK--GI-GWKSWKKRWFILTRTSLVFFKNDPSALPQR-GGEVNLTLGGIDLNNSGSVVVREDKKLLTV 92 (724)
Q Consensus 17 ~~V~KeG~L~l~Kk--g~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~-~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fv 92 (724)
...++.|.+++... |. ..+.++.|||.|-.+.|.|-+-.......+ ..... ....|.+............++.|.
T Consensus 205 ~~Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~-~k~~i~l~~~~v~~~~~~~~~~F~ 283 (354)
T 2rgn_B 205 GKLLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYV-YKNSIKVSCLGLEGNLQGDPCRFA 283 (354)
T ss_dssp CCEEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------CCEE-EEEEEEGGGEEEEESGGGCTTEEE
T ss_pred ccccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCCCCCCCceE-EcceeeccceeeeeccCCCCceEE
Confidence 45788897765431 11 234679999999999999988654311000 00111 112233332211101112345566
Q ss_pred EEecCCC--CceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 93 LFPDGRD--GRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 93 it~~~~~--gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
+...++. ...|.|+|.|.++.+.|+.+|+.++..
T Consensus 284 i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 319 (354)
T 2rgn_B 284 LTSRGPEGGIQRYVLQAADPAISQAWIKHVAQILES 319 (354)
T ss_dssp EEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCceEEEEECCCHHHHHHHHHHHHHHHHH
Confidence 6543332 478999999999999999999999863
No 102
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=95.90 E-value=0.051 Score=58.08 Aligned_cols=103 Identities=15% Similarity=0.136 Sum_probs=65.3
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCC---CCceeeeeeCcEEcCCCcceeec--cCCcc
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQ---RGGEVNLTLGGIDLNNSGSVVVR--EDKKL 89 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~---~~~~~~l~L~~I~L~~~~sv~~~--~~Kk~ 89 (724)
.....+++|.|. +.| .++.|||.|-.+.|.|-|........ .+.... ..+.|.+......... ..-++
T Consensus 243 ~~r~li~eG~l~--~~g----~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~-~k~~i~l~~~~v~~~~d~~~~~~ 315 (354)
T 1dbh_A 243 CCNEFIMEGTLT--RVG----AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYR-LKEKFFMRKVQINDKDDTNEYKH 315 (354)
T ss_dssp TCCCEEEEEEEE--ETT----CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEE-EEEEEESCSCEEEECCCSSSCCS
T ss_pred ccceEEEEeeEE--EEe----cCceEEEEEeCCEEEEEecCCCCCCCCCCCCccee-EEEEEeccceEEEeCCcccccCc
Confidence 345689999654 333 47899999999999998865321111 111111 1233455443321111 12245
Q ss_pred eEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 90 LTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 90 ~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
.|.+... ++..|.|+|.|.+++..|+.+|+.+..+
T Consensus 316 ~F~i~~~--~~~~~~l~a~s~~ek~~W~~~i~~~~~~ 350 (354)
T 1dbh_A 316 AFEIILK--DENSVIFSAKSAEEKNNWMAALISLQYR 350 (354)
T ss_dssp EEEECCT--TSCCEEEECSSHHHHHHHHHHHHHHHTT
T ss_pred cEEEecC--CCCEEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 6776543 2578999999999999999999998764
No 103
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=95.86 E-value=0.059 Score=50.48 Aligned_cols=104 Identities=13% Similarity=-0.025 Sum_probs=63.1
Q ss_pred ceEEEeeeeeec--cCCCCCCcEEEEEEEeCCeEEEEcCCCCC--CCCCCceeeeeeCcEEcCCCcceeeccCCcceEEE
Q 004901 18 TVFKSGPLFISS--KGIGWKSWKKRWFILTRTSLVFFKNDPSA--LPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVL 93 (724)
Q Consensus 18 ~V~KeG~L~l~K--kg~~~k~WKKRWFVL~~~~L~yYKd~~~~--~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvi 93 (724)
..+..+-||--- -...+++-+.|+|.|-++.|.|-|--+.. .....-...+++.+..+..... ..-+++|.+
T Consensus 12 rlvc~~~l~ev~d~~K~~~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~----e~~p~~~~l 87 (140)
T 3qwm_A 12 RLVCYCRLFEVPDPNKPQKLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFEN----QYYPNGIRL 87 (140)
T ss_dssp CEEEEEEEEECSCTTSCCCTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECC----SSCTTEEEE
T ss_pred eEEEEEeeeeeccCcccccccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccC----CCCceEEEE
Confidence 366777665221 11123445899999999999998732211 1111222344555555433211 234566666
Q ss_pred EecCC---CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 94 FPDGR---DGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 94 t~~~~---~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
..... ..+++.|+|.|..|+.+|+.+|+.+|.
T Consensus 88 ~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~esI~ 122 (140)
T 3qwm_A 88 TSSVPGADIKVLINFNAPNPQDRKKFTDDLRESIA 122 (140)
T ss_dssp EECCTTSCCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EecCCCCcceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 54221 237899999999999999999999996
No 104
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=95.68 E-value=0.094 Score=57.27 Aligned_cols=110 Identities=13% Similarity=0.043 Sum_probs=65.2
Q ss_pred CCCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec---cCCcceE
Q 004901 15 ASNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR---EDKKLLT 91 (724)
Q Consensus 15 ~~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~---~~Kk~~f 91 (724)
.....+++|.|... ....+.++.|||.|-.+.|.|-|..........-...+++..+.+......... ..-++.|
T Consensus 253 ~~r~Li~~G~l~~~--~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F 330 (402)
T 2dfk_A 253 RSSELIYTGEMAWI--YQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAF 330 (402)
T ss_dssp TCCCEEEEEEEEEE--SSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEE
T ss_pred cccceEEeceEEEE--eccCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeE
Confidence 45568999966533 222235799999999999999886432111000111233344333321110000 0112456
Q ss_pred EEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 92 vit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
.+.... .+..|.|+|.|.++...|+.+|+.++...
T Consensus 331 ~i~~~~-~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~ 365 (402)
T 2dfk_A 331 KLHNKE-TEEVHLFFAKKLEEKIRWLRAFREERKMV 365 (402)
T ss_dssp EEEESS-SSCEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred EEEECC-CCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 665432 35799999999999999999999988754
No 105
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=95.64 E-value=0.06 Score=63.68 Aligned_cols=99 Identities=29% Similarity=0.441 Sum_probs=63.8
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEe-cC
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFP-DG 97 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~-~~ 97 (724)
|++.|||-+...+..+.+=+.+||||+..+|.|||++.... ..+.+++.+..+.....- ...+++.|.++. ..
T Consensus 540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 613 (772)
T 3zvr_A 540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKE----KKYMLSVDNLKLRDVEKG--FMSSKHIFALFNTEQ 613 (772)
T ss_dssp EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCC----EEEEEECTTEEEEEC---------CEEEEEEETTS
T ss_pred ceeeeeeeecccccccCCCccceeeccccccccccchhhhc----ccccccccccccchhhhc--cccccccccccCCcc
Confidence 99999776655555555668999999999999999976543 345566666655432210 123455565543 22
Q ss_pred C----CCceEEEEeCCHHHHHHHHHHHHHH
Q 004901 98 R----DGRAFTLKAETSEDLYEWKTALELA 123 (724)
Q Consensus 98 ~----~gr~y~fqAdSeeE~~eWi~AL~~a 123 (724)
+ +-+..-|.|+|.++...|...+-+|
T Consensus 614 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 643 (772)
T 3zvr_A 614 RNVYKDYRQLELACETQEEVDSWKASFLRA 643 (772)
T ss_dssp SCSBTTBSEEEEEESSHHHHHHHHHHHHHT
T ss_pred ccccchhhhhhhhccccccchhhHHhhhhc
Confidence 2 2256789999999999999887433
No 106
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=95.50 E-value=0.088 Score=58.46 Aligned_cols=104 Identities=20% Similarity=0.210 Sum_probs=64.2
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc--------CC
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE--------DK 87 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~--------~K 87 (724)
....+++|.|... ....+.++.|||.|-.+.|.|-|...... ... ...+.|.+.......... .-
T Consensus 331 ~r~li~~G~l~~~--~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~----~~~-~~k~~i~l~~~~v~~~~d~~~~~~~~~~ 403 (466)
T 2pz1_A 331 SSELIYSGELTRV--TQPQAKSQQRMFFLFDHQLIYCKKDLLRR----DVL-YYKGRLDMDGLEVVDLEDGKDRDLHVSI 403 (466)
T ss_dssp CSCEEEEEEEEEE--CTTTCCEEEEEEEEETTEEEEEEECSSCT----TCE-EEEEEEETTTCEEEECCSBSCCSSCCCB
T ss_pred cceeEEeeeEEEE--ecCCCCeeEEEEEEECCEEEEEEeccccC----Cce-EEeeeeeccceEEEeCCCCccccccccc
Confidence 4568999966533 22233578999999999999988643211 111 111223443322111111 12
Q ss_pred cceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 88 KLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 88 k~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
+++|.+... ..+..|.|+|.|.++...|+.+|+.++...
T Consensus 404 ~~~F~i~~~-~~~~~~~l~a~s~~eK~~W~~~i~~a~~~~ 442 (466)
T 2pz1_A 404 KNAFRLHRG-ATGDSHLLCTRKPEQKQRWLKAFAREREQV 442 (466)
T ss_dssp CEEEEEECS-SSCCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeC-CCCeEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 356666542 235789999999999999999999998743
No 107
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=95.42 E-value=0.16 Score=54.42 Aligned_cols=109 Identities=13% Similarity=0.191 Sum_probs=64.6
Q ss_pred CceEEEeeeeee---ccCCC------CCCcEEEEEEEeCCeEEEEcCCCCCCC--CCCceeeeeeCcEEcCCCcceeecc
Q 004901 17 NTVFKSGPLFIS---SKGIG------WKSWKKRWFILTRTSLVFFKNDPSALP--QRGGEVNLTLGGIDLNNSGSVVVRE 85 (724)
Q Consensus 17 ~~V~KeG~L~l~---Kkg~~------~k~WKKRWFVL~~~~L~yYKd~~~~~p--~~~~~~~l~L~~I~L~~~~sv~~~~ 85 (724)
...+++|.|... ++|.. ...++.|||.|-.+.|.|-|....... .....+.+ ...|.+..........
T Consensus 208 g~ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~-k~~i~l~~~~v~e~~~ 286 (353)
T 1kz7_A 208 GKLLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSY-KQSLNMTAVGITENVK 286 (353)
T ss_dssp CCEEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEE-EEEEEGGGEEEECCBT
T ss_pred hhhheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEE-EEEeEcccceeeEcCC
Confidence 347899976532 23310 235799999999999999886542210 01111111 1123333221111112
Q ss_pred CCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 86 DKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 86 ~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
+.+..|.|...+ ....|.|+|.|.++++.|+.+|+.++...
T Consensus 287 ~~~~~F~i~~~~-~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 327 (353)
T 1kz7_A 287 GDTKKFEIWYNA-REEVYIIQAPTPEIKAAWVNAIRKVLTSQ 327 (353)
T ss_dssp TBTTEEEEEETT-TTEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCceEEEEECC-CCcEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 234567666533 25789999999999999999999998643
No 108
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=95.34 E-value=0.095 Score=48.27 Aligned_cols=40 Identities=13% Similarity=0.202 Sum_probs=31.2
Q ss_pred CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 87 Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
...||.|...+ ..++.+|.|+|.++++.|+..|+..+...
T Consensus 84 ~~~~FsIiy~~-~~k~LdlvA~s~~e~~~Wv~gL~~L~~~~ 123 (131)
T 1mai_A 84 EDRCFSIVFKD-QRNTLDLIAPSPADAQHWVQGLRKIIHHS 123 (131)
T ss_dssp GGGEEEEEESS-SCCCEEEECSSHHHHHHHHHHHHHHHC--
T ss_pred ccceEEEEECC-CCceEEEEeCCHHHHHHHHHHHHHHHHhh
Confidence 34678776643 24799999999999999999999998644
No 109
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=95.29 E-value=0.13 Score=55.96 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=62.6
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEec
Q 004901 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPD 96 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-~~~Kk~~fvit~~ 96 (724)
..+++|.|... ....+.++.||+.|-.+.|.|-|...... .-...+++..+.+........ ...-++.|.+...
T Consensus 233 rli~~G~l~~~--~~~~~~~~~~~~fLF~d~Ll~~k~k~~~y---~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~ 307 (406)
T 2vrw_B 233 RPKIDGELKIT--SVERRSKTDRYAFLLDKALLICKRRGDSY---DLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIED 307 (406)
T ss_dssp SEEEEEEEEEE--CSSCCSCEEEEEEEESSEEEEEEEETTEE---EEEEEEETTTEEEEC--------CTTCEEEEEEET
T ss_pred cccccccEEEE--ecCCCccceEEEEecCCEEEEEEecCCce---EEEEEecccceeeeecCCCCccCCccceeeEEEec
Confidence 37899966533 22234679999999999999987642111 011123334444332111000 0011355666542
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 97 GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 97 ~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
...+.|.|+|.|.++++.|+.+|+.++...
T Consensus 308 -~~~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 337 (406)
T 2vrw_B 308 -QGAQGYELFFKTRELKKKWMEQFEMAISNI 337 (406)
T ss_dssp -TCSCEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred -CCCceEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 235789999999999999999999999753
No 110
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=94.79 E-value=0.83 Score=43.80 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCCCCCC-------CCC-CCCChhHHHHHHHHHHHHHHHHHHH
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVG---LSMSSGQF-------SSS-RGMDSKTRAELEEIALAEADVARLK 686 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~---l~~~~~~~-------~~~-~~~~~~~~~ll~eia~~E~~v~~le 686 (724)
.+...|.+||+||..||.+|..|+.-|.--..- |+.....| ... ..+-...+.|-+-|..||-+-+++|
T Consensus 59 ~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 59 ILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 445568899999999999999999655433221 11000000 000 1122344667777788888888888
Q ss_pred ----HHHHHHHHHHHHHHhhhc
Q 004901 687 ----QKVAELHHQLNQQRQHHY 704 (724)
Q Consensus 687 ----~~~~~l~~~l~~~~~~~~ 704 (724)
=++..|+..+.||..+|-
T Consensus 139 id~~~eLKalQ~~~eqE~~~H~ 160 (168)
T 3o0z_A 139 IDLNYKLKSLQQRLEQEVNEHK 160 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888887764
No 111
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=94.50 E-value=0.16 Score=54.06 Aligned_cols=99 Identities=16% Similarity=0.149 Sum_probs=59.1
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCcee-----eeeeCcEEcCCCcc--eee-----
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEV-----NLTLGGIDLNNSGS--VVV----- 83 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~-----~l~L~~I~L~~~~s--v~~----- 83 (724)
....+++|.|. +++ .+.|||.|-.+.|.|-|..... ++..+ .+++..+.+..... +..
T Consensus 229 ~r~li~~G~l~--~~~-----~~~~~~fLF~d~Ll~~k~~~~~---~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~ 298 (346)
T 2z0q_A 229 SRVLCCHGELK--NNR-----GVKLHVFLFQEVLVITRAVTHN---EQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLR 298 (346)
T ss_dssp CCCEEEEEEEE--ETT-----SCEEEEEEESSEEEEEEEEEET---TEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC-
T ss_pred CeEEEEeceeE--ECC-----CcEEEEEECCCcEEEEEEeccC---CceeeeeecCCcchhhceeeecCCCccccCcccc
Confidence 34578899654 221 2789999999999988753211 01111 12333333322110 000
Q ss_pred -----ccCCcceEEEEec-CCCCceEEEEeCCHHHHHHHHHHHHHHH
Q 004901 84 -----REDKKLLTVLFPD-GRDGRAFTLKAETSEDLYEWKTALELAL 124 (724)
Q Consensus 84 -----~~~Kk~~fvit~~-~~~gr~y~fqAdSeeE~~eWi~AL~~ai 124 (724)
....+++|.+... +..+..|.|+|.|.++.+.|+.+|+.|+
T Consensus 299 g~~~~~~~~~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 299 GAFSNNERVKNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp -CCSHHHHTSSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccccCCcccccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 0112456776542 2336899999999999999999999986
No 112
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=94.40 E-value=0.36 Score=43.93 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=29.4
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHH
Q 004901 587 LEITKNDLRHRIAKEARGNAILQASLERRKQALHERRL 624 (724)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~ 624 (724)
.|..-.+||.+|..-.+.||.|+..+..-+.+..+.|.
T Consensus 18 ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~ 55 (119)
T 3ol1_A 18 YEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 55 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566799999999999999999988876666555433
No 113
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=94.27 E-value=0.15 Score=58.62 Aligned_cols=104 Identities=17% Similarity=0.219 Sum_probs=62.0
Q ss_pred ceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceee-ccCCcceEEEEec
Q 004901 18 TVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVV-REDKKLLTVLFPD 96 (724)
Q Consensus 18 ~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~-~~~Kk~~fvit~~ 96 (724)
..+++|.|.+. ....+.++.||+.|-.+.|.|-|...... .-...+++..+.+........ ...-++.|.+...
T Consensus 405 rll~~G~l~~~--~~~~~~~~~r~~fLF~d~Ll~~k~~~~~y---~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~ 479 (587)
T 3ky9_A 405 RPKIDGELKIT--SVERRSKMDRYAFLLDKALLICKRRGDSY---DLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIED 479 (587)
T ss_dssp CEEEEEEEEEE--CSSCCSCEEEEEEEETTEEEEEEEETTEE---EEEEEEEGGGEEEEEC-----CCCTTCEEEEEEET
T ss_pred ceEEEeeEEEE--eccCCCcceEEEEEECCEEEEEEecCCEE---EeeeeechhhceeeecCCCCcccccccceeEEEEc
Confidence 37899966533 33346689999999999999988652111 112223344444332211000 0112345666543
Q ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 97 GRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 97 ~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
.+.+.|.|+|.|.++++.|+.+|+.++...
T Consensus 480 -~~~~~~~L~A~S~eeK~~Wi~~I~~ai~~~ 509 (587)
T 3ky9_A 480 -QGAQGYELFFKTRELKKKWMEQFEMAISNI 509 (587)
T ss_dssp -TC---CEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred -CCCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 223789999999999999999999999743
No 114
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=93.57 E-value=0.013 Score=65.70 Aligned_cols=99 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred CceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCC----------cee-----eeeeCcEEcCCCcce
Q 004901 17 NTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG----------GEV-----NLTLGGIDLNNSGSV 81 (724)
Q Consensus 17 ~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~----------~~~-----~l~L~~I~L~~~~sv 81 (724)
...+++|.|+. . ++++.|||.|-.+.|.|.+-.+......+ ..+ .+++..+.+.....
T Consensus 251 r~li~eG~l~~--~----~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d- 323 (510)
T 3jzy_A 251 RKLLHSGKLYK--T----KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTD- 323 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEeceEEE--c----CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccCC-
Confidence 34677886652 2 34789999999999999885443211001 011 12233333332111
Q ss_pred eeccCCcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 82 VVREDKKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 82 ~~~~~Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
....+++|.+... .++|+|+|.|.+++..|+.+|+.++...
T Consensus 324 --~~~~~~~F~i~~~---~~~~~l~a~s~~ek~~W~~~i~~ai~~~ 364 (510)
T 3jzy_A 324 --PSSDEPVFHISHI---DRVYTLRTDNINERTAWVQKIKAASEQY 364 (510)
T ss_dssp ----------------------------------------------
T ss_pred --CCccccceeeecc---ceeEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 1233466777543 5799999999999999999999998754
No 115
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=92.81 E-value=0.24 Score=60.84 Aligned_cols=101 Identities=16% Similarity=0.229 Sum_probs=62.9
Q ss_pred CCceEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCC-------ceeeeeeCcEEcCCCcceeeccCCc
Q 004901 16 SNTVFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRG-------GEVNLTLGGIDLNNSGSVVVREDKK 88 (724)
Q Consensus 16 ~~~V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~-------~~~~l~L~~I~L~~~~sv~~~~~Kk 88 (724)
....+++|.|. +.+.+ +.|||.|-.+.|.|-|.........| -...+++..+.+.... ....-+
T Consensus 441 ~r~Li~eG~l~--~~~~k----~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~---d~~~~~ 511 (1049)
T 3ksy_A 441 CNEFIMEGTLT--RVGAK----HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKD---DTNEYK 511 (1049)
T ss_dssp CSCCCCEEEEE--ETTCS----SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCC---CSSSCC
T ss_pred cceEEEeceEE--EEccC----ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECC---CCcccc
Confidence 45578999665 33321 78999999999999987643211111 1112233333332211 111234
Q ss_pred ceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHhcC
Q 004901 89 LLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALAQA 127 (724)
Q Consensus 89 ~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~~a 127 (724)
+.|.+.. .++..|.|+|.|.+++..|+.+|+.+..++
T Consensus 512 ~~F~I~~--~~~~~~~L~A~S~eeK~~Wi~~I~~~q~k~ 548 (1049)
T 3ksy_A 512 HAFEIIL--KDENSVIFSAKSAEEKNNWMAALISLQYRS 548 (1049)
T ss_dssp SEEEECC--TTSCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEc--CCCCEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 5677654 335799999999999999999999887644
No 116
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=92.16 E-value=0.47 Score=55.46 Aligned_cols=97 Identities=20% Similarity=0.315 Sum_probs=58.6
Q ss_pred CCCCceEEEeeeeeeccCC-CCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeec-cCCcceE
Q 004901 14 GASNTVFKSGPLFISSKGI-GWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVR-EDKKLLT 91 (724)
Q Consensus 14 ~~~~~V~KeG~L~l~Kkg~-~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~-~~Kk~~f 91 (724)
...+.+++.|++. |.|+ ....|++|++.|..+.+.+.-.... +.. . +.+.....+... .....++
T Consensus 554 ~~~~~~i~~G~~~--k~~g~f~~~~~rR~~~l~p~r~e~~~e~~~-----~~~-l-----~~~~~v~~v~k~~i~~~~~l 620 (689)
T 3v5w_A 554 ALGKDCIMHGYMS--KMGNPFLTQWQRRYFYLFPNRLEWRGEGEA-----PQS-L-----LTMEEIQSVEETQIKERKCL 620 (689)
T ss_dssp TSSSCCCEEEEEE--EC-------CEEEEEEEETTEEEEECTTSC-----CCE-E-----EEGGGEEEEEEEESSSCEEE
T ss_pred ccCCcceeecccc--cCCCcccchhhhhccccCCCcccccccCCC-----Ccc-e-----eeeccccccccCcCCCCcce
Confidence 4456788999554 5543 3568999999999998887754211 111 1 222221111111 1222344
Q ss_pred EEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 92 VLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 92 vit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.+. ..+++.|++++.+..++.+|...|+.+..
T Consensus 621 ~~~--~k~~k~f~~~t~~~~~~~~W~~~i~~~~~ 652 (689)
T 3v5w_A 621 LLK--IRGGKQFILQCDSDPELVQWKKELRDAYR 652 (689)
T ss_dssp EEE--ETTTEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred eee--ecCCcEEEEECCChHHHHHHHHHHHHHHH
Confidence 444 45789999999999999999999998765
No 117
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=92.02 E-value=1.3 Score=37.93 Aligned_cols=80 Identities=28% Similarity=0.417 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHH
Q 004901 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAE 671 (724)
Q Consensus 592 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~l 671 (724)
.+||.+|..-.-.||.|+..+. -+...|..++.+.+.|..+|..+|+-+. ..+..
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~d-----------n~~~~~edfk~KyE~E~~~R~~~E~d~~--------------~Lrkd 57 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERD-----------NLAEDIMRLREKLQEEMLQREEAENTLQ--------------SFRQD 57 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHhh
Confidence 4688888776777777766554 3667788899999999999999998775 33666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 672 LEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 672 l~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
+.+..+.=.+ ||.+|.+|...|.=-
T Consensus 58 vD~a~l~r~d---LE~kvesL~eEl~fL 82 (86)
T 3swk_A 58 VDNASLARLD---LERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 6666665544 888888887776543
No 118
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=91.48 E-value=0.62 Score=40.93 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSM--SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~--~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
.+||..|++.|.+|++.+++|..=|.+|++-..- ....+..|..+-.+.-+.-..|..|.+++-+++..+.++..
T Consensus 14 eqRkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~GD~~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~ 90 (98)
T 2ke4_A 14 EQQRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQMGDPASLEPQIAETLSNIERLKLEVQKYEAWLAEAES 90 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGGCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678889999999999999999999999976532 12344456666666666666788888888888888888753
No 119
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=91.43 E-value=1.4 Score=54.24 Aligned_cols=101 Identities=16% Similarity=0.236 Sum_probs=44.0
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH------------------------HHHHHHHHHHHHHHHHHHHHH
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQ------------------------ALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~------------------------~~~~~r~~Le~~V~~L~~~L~ 638 (724)
...+||..-.+||.|+..+.+.|+.||+.+..-+. .+...-..|+.+++.|+++++
T Consensus 922 ~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~ 1001 (1080)
T 2dfs_A 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELH 1001 (1080)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888899999999888888888766432111 112233456777777777777
Q ss_pred HHHHHHHHHHHhhCCCCCCCCCCCCCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 639 AERDLRAALEVGLSMSSGQFSSSRGMDSKTR-AELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 639 ~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~-~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
+...-...||..+. +++ +|=+.|+-||.+...|+|++.+|..++-
T Consensus 1002 ~~~ke~~~lee~~~--------------~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1002 QTQTEKKTIEEWAD--------------KYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 76666666776653 122 3446677888888888888888885443
No 120
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=90.94 E-value=3.3 Score=37.92 Aligned_cols=31 Identities=42% Similarity=0.534 Sum_probs=15.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 613 ERRKQALHERRLALEQDVSRLQEQLQAERDL 643 (724)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~ 643 (724)
+.+++.+.+....|.++...|+.||+.|++.
T Consensus 33 e~~r~ele~~~~~l~~Ek~~L~~qL~~E~~~ 63 (129)
T 2fxo_A 33 EARRKELEEKMVSLLQEKNDLQLQVQAEQDN 63 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555544
No 121
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.83 E-value=0.71 Score=56.76 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 624 LALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAE 691 (724)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~ 691 (724)
..+++||..||++|++-..+..-++.+- .+++.|-+||+.+++++.++.++...
T Consensus 956 ~~~~~e~~~L~~~l~~le~~~~e~~~~~--------------~~v~~L~~e~~~l~~~~~~~~ke~~~ 1009 (1080)
T 2dfs_A 956 ITYSTETEKLRSDVERLRMSEEEAKNAT--------------NRVLSLQEEIAKLRKELHQTQTEKKT 1009 (1080)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777777766655444332222211 34455555555555555444433333
No 122
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=90.82 E-value=1.4 Score=47.19 Aligned_cols=89 Identities=13% Similarity=0.158 Sum_probs=51.3
Q ss_pred CCcEEEEEEEeCCeEEE-EcCCCCCCCC-C--------------CceeeeeeCcEEcCCCcceeeccCCcceEEEEec--
Q 004901 35 KSWKKRWFILTRTSLVF-FKNDPSALPQ-R--------------GGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPD-- 96 (724)
Q Consensus 35 k~WKKRWFVL~~~~L~y-YKd~~~~~p~-~--------------~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~-- 96 (724)
+..+.|++.|-.+.|.+ .|........ + .-...+++..+.+..... .....+.+|.+...
T Consensus 257 ~k~~~~~~fLF~d~lll~~k~~~~~k~~~~~~~~~s~~~~~~~y~~k~~i~l~~~~v~~~~~--~~~~~~~~f~i~~~~~ 334 (377)
T 1foe_A 257 KKEPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPS--ADAEANAVCEIVHVKS 334 (377)
T ss_dssp CSSCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECCCC--TTTTSCCEEEEEECCB
T ss_pred cccceEEEEEcCCeEEEEeccccccccccccccccccccCCCceeEeeeccccceEEEecCC--CccchhhHHHHHhccc
Confidence 34578999999887665 4532111100 0 011223444444433211 01122344544321
Q ss_pred ---CCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 97 ---GRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 97 ---~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
+...+.|.|+|.|.++.+.|+.+|+.++.
T Consensus 335 ~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i~ 366 (377)
T 1foe_A 335 ESEGRPERVFHLCCSSPESRKDFLKSVHSILR 366 (377)
T ss_dssp TGGGBCCEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cccCCCcceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 23357899999999999999999999996
No 123
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.44 E-value=5.7 Score=34.63 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~ 652 (724)
.++......+-++.+|+.+|.+|+..|...|....
T Consensus 16 ~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~ 50 (97)
T 2eqb_B 16 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEAD 50 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555778888899999999988887666543
No 124
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.15 E-value=6.1 Score=44.66 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (724)
++.-++...+|.++.+||+++...+.++.+
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~~ 562 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQAE 562 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHHH
Confidence 344455555556666666555555544443
No 125
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=84.23 E-value=2.9 Score=46.09 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
+.+.++..|+|.+.++|+-|++=+.--..-..- .+.+-..|..+.-.-++-|.-+|.+|..|++++.+++.++-
T Consensus 394 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 394 EARNVTHLLQQELTEAQKGFQDVEAQAATANHT------VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999887543221110000 00011123333333557888899999999999999999988
Q ss_pred HHH
Q 004901 698 QQR 700 (724)
Q Consensus 698 ~~~ 700 (724)
++|
T Consensus 468 ~~~ 470 (471)
T 3mq9_A 468 RLR 470 (471)
T ss_dssp HHH
T ss_pred Hhc
Confidence 776
No 126
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=81.69 E-value=2.6 Score=41.23 Aligned_cols=34 Identities=24% Similarity=0.486 Sum_probs=14.5
Q ss_pred CChhHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVA----------RLKQKVAELHHQLN 697 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~----------~le~~~~~l~~~l~ 697 (724)
+-.+--..|+.+|+||.++- +|...+.+|+..|.
T Consensus 135 ~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~ 178 (189)
T 2v71_A 135 FEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELA 178 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888888865 34455555555553
No 127
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=80.49 E-value=31 Score=34.91 Aligned_cols=67 Identities=19% Similarity=0.263 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 623 RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 623 r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
...++.++.+++..+..-+....-.+.-|... .=+...++|..||..++..+..||.++.++..++-
T Consensus 55 l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~~v--------~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 55 KLALKLQVSKNEQTLQDTNAKIASIQKKMSEI--------KSERELRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333333211 13556677788888888877777777777776664
No 128
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=76.42 E-value=4 Score=42.02 Aligned_cols=38 Identities=18% Similarity=0.328 Sum_probs=30.4
Q ss_pred CCcceEEEEecCCCC-ceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 86 DKKLLTVLFPDGRDG-RAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 86 ~Kk~~fvit~~~~~g-r~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.++++|.+.. .+| .+++|+|++..++.+|+.+|..+|.
T Consensus 224 ~~~~~fev~s--~dG~~t~~l~~~d~~~a~~W~~ai~~~i~ 262 (263)
T 1z87_A 224 PEPRYLEICA--ADGQDAVFLRAKDEASARSWAGAIQAQIG 262 (263)
T ss_dssp SSSCEEEEEE--TTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred CCCceEEEEC--CCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence 3667787764 234 5689999999999999999998874
No 129
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=72.92 E-value=25 Score=39.57 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=14.7
Q ss_pred HHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHH
Q 004901 584 IQRLEITKNDLRHRIAKEARGNAILQASLERRKQ 617 (724)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 617 (724)
+..++.....|+.++...-+.-+.++..++.+++
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~ 491 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLR 491 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3334444444444444444444444444444433
No 130
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=71.97 E-value=78 Score=31.88 Aligned_cols=24 Identities=13% Similarity=0.027 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 670 AELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
++=++++-+++++..|..+-..|.
T Consensus 147 ~~~~~~~e~~~e~~~l~~~r~~l~ 170 (256)
T 3na7_A 147 LVENEVKNIKETQQIIFKKKEDLV 170 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333
No 131
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=71.54 E-value=32 Score=29.16 Aligned_cols=56 Identities=27% Similarity=0.415 Sum_probs=36.7
Q ss_pred HHHhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 612 LERRKQALHER--RLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKV 689 (724)
Q Consensus 612 ~~~~~~~~~~~--r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~ 689 (724)
..+|..|..++ |..=.+.+..|++.|.+|.+-|. .+|.-+|..|.++++.|
T Consensus 22 FgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~---------------------------~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 22 FGKREQAEEERYFRARAKEQLAALKKHKENEISHHA---------------------------KEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHH
T ss_pred cccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------HHHHHHHHHHHHHHHHH
Confidence 44555555544 33333445667777777666654 67788888888888888
Q ss_pred HHHHH
Q 004901 690 AELHH 694 (724)
Q Consensus 690 ~~l~~ 694 (724)
..|..
T Consensus 75 ~~l~~ 79 (84)
T 1gmj_A 75 KKLKQ 79 (84)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 88764
No 132
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=71.28 E-value=38 Score=31.96 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004901 619 LHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (724)
Q Consensus 619 ~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~ 652 (724)
+...+...+.++.+|+.+|.+|+..|...|....
T Consensus 49 l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~ 82 (154)
T 2ocy_A 49 LKRELSDRDDEVKRLREDIAKENELRTKAEEEAD 82 (154)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667889999999999999999998887654
No 133
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=70.76 E-value=34 Score=37.29 Aligned_cols=85 Identities=11% Similarity=0.129 Sum_probs=53.7
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCC---CChhHHHHHHHHHHHHHHHHH
Q 004901 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRG---MDSKTRAELEEIALAEADVAR 684 (724)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~---~~~~~~~ll~eia~~E~~v~~ 684 (724)
||-.|-+....+...=..||.-|.+|+..-..=..|..++....+. ++-+.|.. +..+.+.+++||..+|..|.+
T Consensus 25 i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~--~Q~~~~d~~e~~tq~skkml~~~~~~e~~~~~ 102 (409)
T 1m1j_C 25 IADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPS--EKQTLPQSIEQLTQKSKKIIEEIIRYENTILA 102 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS--STTCCSSCHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ccCCCCCchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 4555555555555555667777777776666666777777776553 32233322 245777899999998886665
Q ss_pred HHHHHHHHHH
Q 004901 685 LKQKVAELHH 694 (724)
Q Consensus 685 le~~~~~l~~ 694 (724)
-+..+..|+.
T Consensus 103 ~~~~i~~l~~ 112 (409)
T 1m1j_C 103 HENTIQQLTD 112 (409)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5555555554
No 134
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=70.46 E-value=9.1 Score=29.65 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~ 652 (724)
++++.=.+|.||..+|++-|++|+.-|.-||..+-
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vr 48 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888999999999999999999999998653
No 135
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=70.06 E-value=64 Score=29.22 Aligned_cols=84 Identities=27% Similarity=0.427 Sum_probs=59.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 004901 582 LAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS 661 (724)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~ 661 (724)
....+|..-|++|+..+.-| ++| + +..+-|...+..++..||..|..|+.+|..|.+....|..
T Consensus 41 ~~~~~l~~Ek~~L~~qL~~E-~~~--l-~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~------------ 104 (129)
T 2fxo_A 41 EKMVSLLQEKNDLQLQVQAE-QDN--L-ADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTA------------ 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHH--H-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Confidence 34556666677777777655 222 2 3557788889999999999999999999999887765543
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 662 RGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 662 ~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
+---+|.+|..|++++.++.
T Consensus 105 ------------~kkkle~e~~~Lk~~led~e 124 (129)
T 2fxo_A 105 ------------KKRKLEDECSELKRDIDDLE 124 (129)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHH
Confidence 44456666667777666653
No 136
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=69.84 E-value=6.9 Score=27.67 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=22.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~ 639 (724)
||-+=..|-.+...||++|.||++-|-.
T Consensus 6 LE~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 6 LKAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 5566667888889999999999987743
No 137
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=68.81 E-value=6.4 Score=27.44 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=22.2
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
.||-+-..+-.+..+||.||+||+.-|.
T Consensus 5 QLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 5 QIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3566666777888999999999998764
No 138
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=68.61 E-value=75 Score=35.18 Aligned_cols=31 Identities=6% Similarity=0.240 Sum_probs=18.8
Q ss_pred hhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 607 ILQASLERRKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 607 ~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
.||++++.+.....+....+.+-...|+++.
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~ 155 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEMELHY 155 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 4788888777766666555544444444433
No 139
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.39 E-value=7.7 Score=27.42 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=21.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
||-+-..+-.+...||++|.||++-|-
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 555666777888999999999998764
No 140
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=67.72 E-value=59 Score=29.13 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 621 ERRLALEQDVSRLQEQLQAERDLRAALEV 649 (724)
Q Consensus 621 ~~r~~Le~~V~~L~~~L~~e~~~~~~le~ 649 (724)
..|..+|.|+..|++.+..+.-.|.-||.
T Consensus 62 ~~r~~~E~di~~lrK~lD~~~l~r~dLE~ 90 (119)
T 3ol1_A 62 LQREEAENTLQSFRQDVDNASLARLDLER 90 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHH
Confidence 34666677777777777666666665554
No 141
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=67.62 E-value=7 Score=27.10 Aligned_cols=28 Identities=14% Similarity=0.362 Sum_probs=22.3
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
.||-+=..+-.+..+||.||+||+.-|.
T Consensus 4 QLEdKvEeLl~~~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 4 XIEXKLXEIXSKXYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 3566666777888999999999998764
No 142
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=67.34 E-value=6.7 Score=27.28 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=23.1
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
.||.+=..|-.+-..||+||.||+.-|.
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll~ 31 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 4677777888899999999999987653
No 143
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=67.18 E-value=8.2 Score=47.92 Aligned_cols=34 Identities=15% Similarity=0.307 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l 651 (724)
.+...+..|++++..|+.+|+++..-...|+..+
T Consensus 917 ~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~ 950 (1184)
T 1i84_S 917 RLAAKKQELEEILHEMEARIEEEEERSQQLQAEK 950 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777777777766665555554433
No 144
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=65.54 E-value=11 Score=26.38 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=22.5
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
.||-|-..|-.+..+||.+|.+|+.-|.
T Consensus 5 QLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 5 QLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 4666777788888999999999987663
No 145
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=65.48 E-value=99 Score=29.70 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=61.3
Q ss_pred HHHHHHHhhhhhHHH----HHHHHHHhhhh-hhhhhhHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 580 EELAIQRLEITKNDL----RHRIAKEARGN-AILQASLERRKQAL-------HERRLALEQDVSRLQEQLQAERDLRAAL 647 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~----~~~~~~~~~~n-~~~~~~~~~~~~~~-------~~~r~~Le~~V~~L~~~L~~e~~~~~~l 647 (724)
.-..+++|-.+=+.| +.++....-.+ +.||.+|.+|+..+ .+-+.+||++...|+.++..=..-..-+
T Consensus 10 ~~~~l~~Lq~~i~~l~~~~~~~~~e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~ 89 (174)
T 2p22_A 10 HHEMLQNLQTVVNELYREDVDYVADKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKV 89 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556655554443 44444444444 57899999998875 4445556666666666533211111122
Q ss_pred HHhhCCCC-CCCC------CCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 648 EVGLSMSS-GQFS------SSRGMDSKTRAELEEIALAEADVARLKQKV 689 (724)
Q Consensus 648 e~~l~~~~-~~~~------~~~~~~~~~~~ll~eia~~E~~v~~le~~~ 689 (724)
+.-...++ +... .+.-+-.+.-++.+|...+|..|-.|.+=+
T Consensus 90 ~e~~~~~~~~~~diD~~v~~~~~l~~Qll~l~Aed~AieDaIy~L~~al 138 (174)
T 2p22_A 90 QQFSSTSHVDDEDVNSIAVAKTDGLNQLYNLVAQDYALTDTIECLSRML 138 (174)
T ss_dssp HHHTTSSCCCSSCGGGTEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCCCChhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22221121 2111 223344678899999999999998877543
No 146
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=64.41 E-value=22 Score=25.76 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 004901 675 IALAEADVARLKQKVA 690 (724)
Q Consensus 675 ia~~E~~v~~le~~~~ 690 (724)
||-||.+|++|-+++.
T Consensus 33 iaylekeianlrkkie 48 (49)
T 3he5_A 33 IAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 6778888888877763
No 147
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=64.39 E-value=9.1 Score=26.77 Aligned_cols=28 Identities=14% Similarity=0.414 Sum_probs=22.4
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 611 SLERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
.||-+=..+-.+-..||+||.||++-|.
T Consensus 5 QLEdKVEeLl~~n~~Le~EV~RLk~LL~ 32 (34)
T 1uo4_A 5 QIEDKGEEILSKLYHIENELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHc
Confidence 3566667788888999999999998664
No 148
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=63.05 E-value=12 Score=26.22 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=20.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
||-+-+.|-.+...||++|.||++-|
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55566677788889999999998865
No 149
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=62.81 E-value=7.5 Score=43.31 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 625 ALEQDVSRLQEQLQAERDLRAALEV 649 (724)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~le~ 649 (724)
+||+-+..|+..++.....-++|+.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQs 138 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQK 138 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444444444
No 150
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=62.14 E-value=15 Score=33.90 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 624 LALEQDVSRLQEQLQAERDLRAALEVGL 651 (724)
Q Consensus 624 ~~Le~~V~~L~~~L~~e~~~~~~le~~l 651 (724)
.-.+.++.+|+.+|++|+..|...|...
T Consensus 42 ~~~~~e~~~L~~~l~eE~~~R~~aE~~~ 69 (135)
T 2e7s_A 42 SDRDDEVKRLREDIAKENELRTKAEEEA 69 (135)
T ss_dssp TTHHHHHHTHHHHHHHTTSHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999998776644
No 151
>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}
Probab=61.57 E-value=35 Score=32.70 Aligned_cols=82 Identities=13% Similarity=0.069 Sum_probs=51.9
Q ss_pred CcEEEEEEEe-----CCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEeCCH
Q 004901 36 SWKKRWFILT-----RTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAETS 110 (724)
Q Consensus 36 ~WKKRWFVL~-----~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr~y~fqAdSe 110 (724)
.=|.||.+|. .+.++.+|.+.... + .+.+ -..-+|.....+........-|.++. +++||.+|.+.
T Consensus 63 ~KK~R~L~lav~~~~sgrV~lhK~K~N~n--g--sfsi-GkTW~L~ELk~Ie~~~~~~~gF~ltl----~K~Y~W~a~s~ 133 (171)
T 3hie_A 63 NKKKRLLILSAKPNNAKLIQIHKARENSD--G--SFQI-GRTWQLTELVRVEKDLEISEGFILTM----SKKYYWETNSA 133 (171)
T ss_dssp GEEEEEEEEEECTTCTTCEEEEEEEECTT--S--CEEE-EEEEEGGGCCEEEECSSCTTEEEEES----SSEEEEECSSH
T ss_pred CccceEEEEEEecCCCceEEEEEEEECCC--C--cEEe-eeeeecccceeeeccCCCCCcEEEEe----CCeEEEecCCH
Confidence 3488888774 23577787765432 1 1111 11233333333222222355688888 79999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 004901 111 EDLYEWKTALELALAQ 126 (724)
Q Consensus 111 eE~~eWi~AL~~ai~~ 126 (724)
.|+..++..|-+...+
T Consensus 134 ~Er~~FI~sL~K~y~k 149 (171)
T 3hie_A 134 KERTVFIKSLITLYIQ 149 (171)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888764
No 152
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=61.05 E-value=13 Score=25.74 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=20.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
||-+-..+-.+...||+||.||++-|
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 56666677788899999999998765
No 153
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I
Probab=60.79 E-value=34 Score=29.92 Aligned_cols=58 Identities=22% Similarity=0.310 Sum_probs=49.4
Q ss_pred HHHHHHHhhhhhHHHHHHH-HHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 580 EELAIQRLEITKNDLRHRI-AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~-~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
+-.+-+|||.+|.+-+.+| .-|++..+||..-=.+-+.-..+||..+..+|.+.+.+-
T Consensus 15 E~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~ea 73 (105)
T 3v6i_B 15 EKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARY 73 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456789999999999999 569999999998877777777899999999999887654
No 154
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=60.53 E-value=17 Score=24.32 Aligned_cols=24 Identities=33% Similarity=0.560 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 674 EIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
|||.|-.+|+-|++++..|++.+-
T Consensus 3 eiaalkqeiaalkkeiaalkfeia 26 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIA 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666554
No 155
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=60.53 E-value=12 Score=33.81 Aligned_cols=98 Identities=15% Similarity=0.129 Sum_probs=56.4
Q ss_pred eEEEeeeeeeccCCCCCCcEEEEEEEeCCeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeecc-CCcceEEEEecC
Q 004901 19 VFKSGPLFISSKGIGWKSWKKRWFILTRTSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVRE-DKKLLTVLFPDG 97 (724)
Q Consensus 19 V~KeG~L~l~Kkg~~~k~WKKRWFVL~~~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~-~Kk~~fvit~~~ 97 (724)
.++.|++..... . ..=+.|++.|-...|.|-|-... .+......-..|.+...+...... +.+..|.+...+
T Consensus 10 Ll~q~~f~V~~~-~--~k~~eR~vFLFe~~ilf~K~~~~----~~~~~Y~~K~~ikl~~~~lte~~~~~d~~kFeiw~~~ 82 (119)
T 1fho_A 10 IIRHDAFQVWEG-D--EPPKLRYVFLFRNKIMFTEQDAS----TSPPSYTHYSSIRLDKYNIRQHTTDEDTIVLQPQEPG 82 (119)
T ss_dssp SSEEEEEEECST-T--CSCEEEEEEEETTEEEEEEECCS----SSSCCCSSCCEEESSSCEEEEECTTCCEEEEECCSTT
T ss_pred ccccCceEEEeC-C--CCcceEEEEEecCcEEEEEEecC----CCCCcEEEeeEEeeceeEEEecCCCCCCcEEEEccCC
Confidence 456664443321 1 22378999999999999986621 111111112234444332211112 334557765433
Q ss_pred CCCceEEE--EeCCHH-HHHHHHHHHHHHH
Q 004901 98 RDGRAFTL--KAETSE-DLYEWKTALELAL 124 (724)
Q Consensus 98 ~~gr~y~f--qAdSee-E~~eWi~AL~~ai 124 (724)
. ...|.+ +|.|.+ ..+.|+..|+..+
T Consensus 83 ~-~~~~il~~qA~s~e~~K~~Wv~~I~~~~ 111 (119)
T 1fho_A 83 L-PSFRIKPKDFETSEYVRKAWLRDIAEEQ 111 (119)
T ss_dssp C-CCBCCCCCSSSSCSHHHHHHHHHHHTCC
T ss_pred C-CceEEEeeecCCcHHHHHHHHHHHHHHH
Confidence 2 357788 999999 9999999999743
No 156
>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1
Probab=59.12 E-value=11 Score=36.47 Aligned_cols=38 Identities=13% Similarity=0.227 Sum_probs=28.8
Q ss_pred CcceEEEEecCCCCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 87 KKLLTVLFPDGRDGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 87 Kk~~fvit~~~~~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.+.+|.+... ....+.+|+|.+..++..|+.+|...|.
T Consensus 140 e~r~fEv~s~-DG~~t~iLrc~D~a~a~~Wf~aI~sni~ 177 (178)
T 2adz_A 140 EPRYLEICAA-DGQDAVFLRAKDEASARSWAGAIQAQIG 177 (178)
T ss_dssp SSCEEEEEET-TTTEEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred CccEEEEEcC-CCCeeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 4456766531 1235889999999999999999998774
No 157
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=58.34 E-value=84 Score=30.53 Aligned_cols=113 Identities=19% Similarity=0.189 Sum_probs=70.0
Q ss_pred HHHHhhhhhHHH---HHHHHHHhhhhhhhhhhHHHhHHHH----------------------------------------
Q 004901 583 AIQRLEITKNDL---RHRIAKEARGNAILQASLERRKQAL---------------------------------------- 619 (724)
Q Consensus 583 ~~~~~~~~~~~~---~~~~~~~~~~n~~~~~~~~~~~~~~---------------------------------------- 619 (724)
+|..|...=.+| |..|..|++.|+.|.+.|+..=++.
T Consensus 20 Li~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~~ 99 (190)
T 3thf_A 20 LIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLETR 99 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccC
Confidence 444444433333 5678999999999988887644321
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHhhCCCCCCCC-CCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 004901 620 HERRLALEQDVSRLQEQLQAE-----------RDLRAALEVGLSMSSGQFS-SSRGMDSKTRAELEEIALAEADVARLKQ 687 (724)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e-----------~~~~~~le~~l~~~~~~~~-~~~~~~~~~~~ll~eia~~E~~v~~le~ 687 (724)
++-|..|.+--..|+.|+.+= +.++.+|.+.|+. ..+. .-.++-.| -+||.|-.-|++-|--.|+
T Consensus 100 ~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~--eql~DY~~fv~mK-a~Ll~eqReLddkIklgeE 176 (190)
T 3thf_A 100 QQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSA--DMCADYDYFINMK-AKLIADARDLAVRIKGSEE 176 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHH-HHHHHHHHhHHHHHHhhHH
Confidence 445777888888888888764 4455555555431 1111 11222222 3688888888888888888
Q ss_pred HHHHHHHHHHH
Q 004901 688 KVAELHHQLNQ 698 (724)
Q Consensus 688 ~~~~l~~~l~~ 698 (724)
|+..|+.-|-|
T Consensus 177 QL~~L~~sL~q 187 (190)
T 3thf_A 177 QLSSLSDALVQ 187 (190)
T ss_dssp HHHHHTTC---
T ss_pred HHHHHHHhhcc
Confidence 88888765543
No 158
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=58.07 E-value=57 Score=29.60 Aligned_cols=61 Identities=23% Similarity=0.369 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
|-.-|..|+-+|+.-+..+..||+.|.-. . ...=.++..+...|..||..+..++..+-++
T Consensus 43 lrr~iq~L~~el~~l~~~~~sLE~~l~e~------------e-~~~~~~l~~~q~~i~~lE~eL~~~r~em~~q 103 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKASLENSLEET------------K-GRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQ 103 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHH------------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888889999887411 1 1112244555555666666666665555444
No 159
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=57.43 E-value=8 Score=25.06 Aligned_cols=21 Identities=38% Similarity=0.379 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 004901 667 KTRAELEEIALAEADVARLKQ 687 (724)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~ 687 (724)
+.-.|-.|||.||-+|+-|||
T Consensus 8 knarlkqeiaaleyeiaaleq 28 (28)
T 3ra3_B 8 KNARLKQEIAALEYEIAALEQ 28 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred hhhHHHHHHHHHHHHHHHhcC
Confidence 344567788889988888875
No 160
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=57.06 E-value=15 Score=26.56 Aligned_cols=25 Identities=36% Similarity=0.575 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 673 EEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
+|+|.||.++.-||+++..|+..|.
T Consensus 20 eelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888999999999999998887764
No 161
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=56.36 E-value=1.1e+02 Score=27.27 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 620 HERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 620 ~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
|..=-.|.-++.+|+++|.++...|.-||..++...- .=-.++.+|.+-+.-.|..+..|-+.+..++.
T Consensus 5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E------~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~ 73 (112)
T 1x79_B 5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSE------DSSHQISALVLRAQASEILLEELQQGLSQAKR 73 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444568888999999999999999999998753211 01124445555555555555555555444444
No 162
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=56.07 E-value=49 Score=36.13 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
+|.++-..|+.+++.=+.-|..+.+.+....| ..+.+|++++..+-++|..||+++..+..+|...--
T Consensus 32 ~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 32 ALDREVQELKKRLQEVQTERNQVAKRVPKAPP---------EEKEALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444446666666654211 467889999999999999999999999988876543
No 163
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=56.03 E-value=14 Score=25.87 Aligned_cols=27 Identities=11% Similarity=0.325 Sum_probs=20.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
||-+=..+-.+...|+.||+||++-|.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 555566777788899999999998664
No 164
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=56.03 E-value=18 Score=25.63 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=21.5
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQKVAE 691 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~ 691 (724)
|-.++.+||.+-.-||.+|.+|+.-+.+
T Consensus 6 LE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 6 LEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 3457788888888888888888876543
No 165
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=55.53 E-value=1.2e+02 Score=28.36 Aligned_cols=113 Identities=19% Similarity=0.232 Sum_probs=45.9
Q ss_pred cCCCCcccCCCCchHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhh--------HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 566 RKTSSVESIDSSGEEELAIQRLEITKNDLRHRIAKEARGNAILQAS--------LERRKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~--------~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
|-++.+.++|.. .+.|| ..|..+..+...=.+....+++. ....-..+...+..|++.+..|.+.|
T Consensus 18 ~~~~~~~~md~~-----l~~rL-~~Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel 91 (152)
T 3a7p_A 18 RSNPQTDSMDDL-----LIRRL-TDRNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVI 91 (152)
T ss_dssp ---------------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCcchhHHHH-----HHHHH-HHhhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777766 55555 34555555554333333333321 12233455666777778887777777
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 638 QAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 638 ~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
++=...-.+|... ..+|=.+..++|..+.+|+++=..|=.++-+...
T Consensus 92 ~eK~K~~e~l~DE-----------------l~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~ 138 (152)
T 3a7p_A 92 ALKNKNTERLNAA-----------------LISGTIENNVLQQKLSDLKKEHSQLVARWLKKTE 138 (152)
T ss_dssp HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6655555554443 3456667778888888888777666555554433
No 166
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=55.37 E-value=44 Score=31.95 Aligned_cols=34 Identities=15% Similarity=0.113 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGL 651 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l 651 (724)
.++-.-.+||+-+..||..+..-..-+..|+.-+
T Consensus 38 El~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~ 71 (168)
T 3o0z_A 38 EMSKSISQLESLNRELQERNRILENSKSQTDKDY 71 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445677777777777777777777777654
No 167
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=55.27 E-value=37 Score=28.51 Aligned_cols=50 Identities=24% Similarity=0.325 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhHHHhHHHH----------HHHHHHHHHHHHHHHHHHHH
Q 004901 590 TKNDLRHRIAKEARGNAILQASLERRKQAL----------HERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 590 ~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~----------~~~r~~Le~~V~~L~~~L~~ 639 (724)
+.-+||+....|++.=..+|-.|.+=|.+. ..+-..|+.|+.+|++++.+
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344788888888888888887776555533 44566799999999999887
No 168
>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}
Probab=54.23 E-value=40 Score=35.11 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=52.7
Q ss_pred CCCcEEEEEEEeC-----CeEEEEcCCCCCCCCCCceeeeeeCcEEcCCCcceeeccCCcceEEEEecCCCCceEEEEeC
Q 004901 34 WKSWKKRWFILTR-----TSLVFFKNDPSALPQRGGEVNLTLGGIDLNNSGSVVVREDKKLLTVLFPDGRDGRAFTLKAE 108 (724)
Q Consensus 34 ~k~WKKRWFVL~~-----~~L~yYKd~~~~~p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk~~fvit~~~~~gr~y~fqAd 108 (724)
.+.-|.||.+|.- +.++++|.+.... +.+.+ -+..+|.....+...-....-|+++. +++||.+|.
T Consensus 131 ~kkKK~R~LcLaV~~d~sGRV~LhKaKeN~n----gsFsI-GKTW~L~ELk~Id~~~~~~~gF~LTl----~K~YyW~A~ 201 (320)
T 3a58_A 131 LENKKKRLLILSAKPNNAKLIQIHKARENSD----GSFQI-GRTWQLTELVRVEKDLEISEGFILTM----SKKYYWETN 201 (320)
T ss_dssp GGGEEEEEEEEEECSSCTTCEEEEEEEECGG----GCEEE-EEEEEGGGCCEEEECSSCTTEEEEES----SSEEEEEES
T ss_pred ccccCceEEEEEEecCCCceEEEEEEEecCC----CceEe-cceechhhhhhhhcccCCCCceEEEe----CCceEEecC
Confidence 3456889988753 3578887755432 11111 11233333222221113346689988 799999999
Q ss_pred CHHHHHHHHHHHHHHHhc
Q 004901 109 TSEDLYEWKTALELALAQ 126 (724)
Q Consensus 109 SeeE~~eWi~AL~~ai~~ 126 (724)
+..|+..++..|-+...+
T Consensus 202 s~kER~~FI~sLvKiy~K 219 (320)
T 3a58_A 202 SAKERTVFIKSLITLYIQ 219 (320)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 999999999999887653
No 169
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=52.58 E-value=32 Score=25.85 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=32.8
Q ss_pred hHHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHH
Q 004901 579 EEELAIQRLEITKNDLRHRIAKEARGNAILQASLERRKQA 618 (724)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~ 618 (724)
+=|.-|+|||.+=.-||.|.|+=.-+...-|..|.+|-..
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~ 41 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQ 41 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999998887888888877766443
No 170
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=52.52 E-value=74 Score=27.06 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEE----IALAEADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~e----ia~~E~~v~~le~~~~~l~~~l~~ 698 (724)
||+..+.|++++++|..++.--|+-+ +-+.+ .+-|+.++.....++.+||.+|..
T Consensus 23 le~~r~~ir~eI~KElKiKeGaENL~------------------katt~~kk~~~~V~~eL~~sn~kl~~L~~eL~e 81 (86)
T 1cxz_B 23 LELERERLRREIRKELKLKEGAENLR------------------RATTDLGRSLGPVELLLRGSSRRLDLLHQQLQE 81 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHhHHHHH------------------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777777776555432 22222 456788888888999999888753
No 171
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=52.45 E-value=24 Score=23.63 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q 004901 622 RRLALEQDVSRLQE 635 (724)
Q Consensus 622 ~r~~Le~~V~~L~~ 635 (724)
.-.+|||+|++|..
T Consensus 16 enyqleqevaqleh 29 (33)
T 1fmh_A 16 ENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHH
Confidence 35679999998764
No 172
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=51.59 E-value=28 Score=25.60 Aligned_cols=30 Identities=10% Similarity=0.324 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 670 AELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 670 ~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
+||.-|.-+-.||++-|+++.+|+.+|-+-
T Consensus 6 ~l~qkI~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 6 ELIQNMDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888889999999999999998877653
No 173
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=50.88 E-value=28 Score=24.62 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=22.4
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 665 DSKTRAELEEIALAEADVARLKQKVAE 691 (724)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~~~~~ 691 (724)
-.++.+||.+-.-||.+|.+|...+.+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll~~ 33 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKNAE 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 457889999999999999999877654
No 174
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=50.46 E-value=1.5e+02 Score=32.16 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=42.9
Q ss_pred hhhhhhhHHHhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHH
Q 004901 605 NAILQASLERRKQALHERRLA---LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEAD 681 (724)
Q Consensus 605 n~~~~~~~~~~~~~~~~~r~~---Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~ 681 (724)
++.||-.|.+-++-+.+-|.+ --.-|..||.-|+++..-.. .+++||=.||..++.+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~ 458 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ--------------------KKVEELEGEITTLNHK 458 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH
Confidence 445666665555544444333 33456667777766655421 2567777888888888
Q ss_pred HHHHHHHHHHHH
Q 004901 682 VARLKQKVAELH 693 (724)
Q Consensus 682 v~~le~~~~~l~ 693 (724)
+.+++-+|..|+
T Consensus 459 ~~~~~~~~~~~~ 470 (471)
T 3mq9_A 459 LQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888888877765
No 175
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=49.38 E-value=23 Score=24.58 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQK 688 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~ 688 (724)
|-.|+.+||.+..-||.+|++|..-
T Consensus 5 LEdKVEell~~~~~le~EV~Rl~~l 29 (33)
T 2wq1_A 5 LEDKIEENTSKIYHNTNEIARNTKL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3468899999999999999998754
No 176
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=49.06 E-value=1.1e+02 Score=29.39 Aligned_cols=74 Identities=16% Similarity=0.122 Sum_probs=40.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 613 ERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (724)
Q Consensus 613 ~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (724)
+.+++++++-|.+...++..|+++|...+ .-|...+.. +..=+.++++|..||+.|..+ |..+-.++
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr---~EL~aL~~a-------~~~DeakI~aL~~Ei~~Lr~q---L~~~R~k~ 136 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKR---YEYNALLTA-------SSPDTAKINAVAKEMESLGQK---LDEQRVKR 136 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHTS-------SSCCHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhC-------CCCCHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 33455555555555555666665554322 233322220 222346788888888877776 55555556
Q ss_pred HHHHHHH
Q 004901 693 HHQLNQQ 699 (724)
Q Consensus 693 ~~~l~~~ 699 (724)
+.++..+
T Consensus 137 ~~em~Ke 143 (175)
T 3lay_A 137 DVAMAQA 143 (175)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 6666544
No 177
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=48.89 E-value=1.8e+02 Score=27.61 Aligned_cols=77 Identities=22% Similarity=0.340 Sum_probs=48.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHH
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQLQAERD------------LRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAE 679 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~------------~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E 679 (724)
++.-.+...+.+.+||+|-++|++ +..|++ ||..|-.|- -.+++.-.=.=|++|+
T Consensus 18 ~e~aek~~~~k~~~le~ek~~l~~-~e~~r~k~~~h~~~k~~qlre~~d~gt------------t~~~i~~m~~yI~llr 84 (169)
T 3k29_A 18 VDRAEKVVKEKRRLLELEQEKLRE-RESERDKVKNHYMQKIRQLREQLDDGT------------TSDAILKMKAYIKVVA 84 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC------------CcHHHHHHHHHHHHHH
Confidence 334445567778888888888764 344443 333333321 1345555556688888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 004901 680 ADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 680 ~~v~~le~~~~~l~~~l~~~~~ 701 (724)
+..+.||++|.+...++-.++.
T Consensus 85 Erea~lEqkVaeq~e~Ve~e~q 106 (169)
T 3k29_A 85 IQLSEEEEKVNKQKENVLAASK 106 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888777765554
No 178
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=48.89 E-value=7.2 Score=29.06 Aligned_cols=42 Identities=29% Similarity=0.520 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 592 NDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 592 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
..|.+|++-..|+||.|...+-| +..--.-||.|++.|.+-.
T Consensus 6 aqlknrvayklkenaklenivar----lendnanlekdianlekdi 47 (56)
T 3he4_A 6 AQLKNRVAYKLKENAKLENIVAR----LENDNANLEKDIANLEKDI 47 (56)
T ss_dssp -----CCCCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchHHHHHHH----HhcccchHHHHHHHHHHHH
Confidence 35778888889999998766543 3333445666666665544
No 179
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=48.40 E-value=99 Score=27.85 Aligned_cols=61 Identities=11% Similarity=0.219 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
|-.-|..|+-+|+.=+..+..||+.|.-. .. ..=.++..+...|..||..+..++..+-++
T Consensus 41 lrr~iq~L~~el~~l~~~~~~LE~~l~e~------------e~-~~~~~l~~~q~~i~~lE~eL~~~r~e~~~q 101 (129)
T 3tnu_B 41 MNRMIQRLRAEIDNVKKQCANLQNAIADA------------EQ-RGELALKDARNKLAELEEALQKAKQDMARL 101 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH------------HH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34456778888888888899999887411 11 111244455555555665555555555443
No 180
>1cxz_B Protein (PKN); protein-protein complex, antiparallel coiled-coil, signaling protein; HET: GSP; 2.20A {Homo sapiens} SCOP: a.2.6.1
Probab=47.36 E-value=39 Score=28.78 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=22.4
Q ss_pred chHHHHHHHhhhhhHHHHHHHHHHhh
Q 004901 578 GEEELAIQRLEITKNDLRHRIAKEAR 603 (724)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (724)
+.|-..-++||..|..|+..|.||.|
T Consensus 14 ~~d~~~q~~le~~r~~ir~eI~KElK 39 (86)
T 1cxz_B 14 LAAPGVQQQLELERERLRREIRKELK 39 (86)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHh
Confidence 33456679999999999999999998
No 181
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=46.75 E-value=79 Score=34.48 Aligned_cols=71 Identities=17% Similarity=0.318 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 621 ERRLALEQDVSRLQEQLQAERDLRAALEVGLSM--SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 621 ~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~--~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
+.=.+|.++-..|+.+++.=+.-|..+.+.+.. ..| .-...|=.+++++=++|+.+|+++..+|+++..+-
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKEIGKLKREG--KDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTL 102 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSC--SCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555556666666643 222 11123344555555555555555555555554443
No 182
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=46.58 E-value=23 Score=24.66 Aligned_cols=24 Identities=33% Similarity=0.382 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQ 687 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~ 687 (724)
|-.++.+||.+-.-||.+|.+|..
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 446788999999999999999875
No 183
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=46.11 E-value=96 Score=35.42 Aligned_cols=44 Identities=20% Similarity=0.244 Sum_probs=22.9
Q ss_pred HHHhhhhhhhhhh-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 599 AKEARGNAILQAS-----LERRKQALHERRLALEQDVSRLQEQLQAERD 642 (724)
Q Consensus 599 ~~~~~~n~~~~~~-----~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (724)
.++..+++||||- -++....-+.++.+.|++...|+++..+...
T Consensus 467 ~~~~~~~~ilq~d~~l~~~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~ 515 (592)
T 1f5n_A 467 SKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 515 (592)
T ss_dssp HTHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667777763 2333344455555555555555554443333
No 184
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=46.07 E-value=51 Score=27.99 Aligned_cols=26 Identities=31% Similarity=0.534 Sum_probs=15.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
++-|...|-..+..||..|..|+.+|
T Consensus 61 aEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 61 LEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35555566666666666666666555
No 185
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=45.99 E-value=32 Score=29.03 Aligned_cols=28 Identities=29% Similarity=0.349 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (724)
+.|-..|..++++|+.|++....|+.-.
T Consensus 49 ~~Lh~~ie~l~eEi~~lk~en~eL~ela 76 (83)
T 1uii_A 49 EKLHKEIEQKDNEIARLKKENKELAEVA 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777778888888888888877543
No 186
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=45.73 E-value=1.5e+02 Score=32.34 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=54.9
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCC---CCCChhHHHHHHHHHHHHHHHHH
Q 004901 608 LQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSS---RGMDSKTRAELEEIALAEADVAR 684 (724)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~---~~~~~~~~~ll~eia~~E~~v~~ 684 (724)
||.-|-+.......-=.+||..|.++-..=..=..+=.+|...+....- +.| ..+-.+.+..|+||..+|.-|.+
T Consensus 25 l~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~--~~~~n~~~~~q~Skkml~~~~~~~~~~~~ 102 (411)
T 3ghg_C 25 IADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDES--SKPNMIDAATLKSRKMLEEIMKYEASILT 102 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTC--CCTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccC--CCCcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555667777777766666666666777766653321 222 23445667789999888888877
Q ss_pred HHHHHHHHHHHHH
Q 004901 685 LKQKVAELHHQLN 697 (724)
Q Consensus 685 le~~~~~l~~~l~ 697 (724)
.+..+..|+..+.
T Consensus 103 ~~~~i~~l~~~~~ 115 (411)
T 3ghg_C 103 HDSSIRYLQEIYN 115 (411)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 7766666655443
No 187
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=45.08 E-value=27 Score=28.99 Aligned_cols=49 Identities=37% Similarity=0.506 Sum_probs=31.3
Q ss_pred HhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 586 RLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
.|...|+||=.|+.+=.-++.+||.-++..++ -|..|++-|..|.+.|.
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~----~~~r~~~ri~elEeElk 75 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ----AKLKLEEKNRELEEELR 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 47788999999999888999999988775444 44555555555555543
No 188
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=44.31 E-value=88 Score=34.49 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 667 KTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
.+.+|++++..|-++|..||+++.++..+|...--
T Consensus 70 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 70 PVDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999998888866543
No 189
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=44.19 E-value=1e+02 Score=32.03 Aligned_cols=65 Identities=15% Similarity=0.177 Sum_probs=45.0
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHH
Q 004901 609 QASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELE 673 (724)
Q Consensus 609 ~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~ 673 (724)
|+.+-.++..++..+.+|.+++.+|..+-..=.....+|++--....-.|..+..+-..++..|+
T Consensus 12 ~~~~~e~r~~lr~~~eql~~~i~~L~~~ap~W~~aq~al~rL~eq~g~~~~ds~~v~~~mq~~Le 76 (302)
T 3ibp_A 12 VSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTSSQDVTEYLQQLLE 76 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHH
Confidence 34455677788888889999999998888877777777777555544455544455555655554
No 190
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=43.80 E-value=49 Score=22.20 Aligned_cols=25 Identities=40% Similarity=0.421 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
-.|-.|+|.+|++--.|||+|..|.
T Consensus 4 aqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3456788888888888888887654
No 191
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=43.79 E-value=21 Score=38.93 Aligned_cols=43 Identities=28% Similarity=0.292 Sum_probs=36.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMS 654 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~ 654 (724)
|++++.++.+.-..|++++.+|+++|.+|..+|+-|.+-+...
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~el 57 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQEL 57 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566677778888899999999999999999999998877443
No 192
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=43.04 E-value=33 Score=42.46 Aligned_cols=12 Identities=33% Similarity=0.545 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 004901 288 RLLQRILRMMHT 299 (724)
Q Consensus 288 ~lL~~Ll~~L~~ 299 (724)
.++.||+..++.
T Consensus 436 ~lF~wlv~~iN~ 447 (1184)
T 1i84_S 436 RLFRWILTRVNK 447 (1184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH
Confidence 455566555543
No 193
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=42.89 E-value=28 Score=24.35 Aligned_cols=24 Identities=25% Similarity=0.434 Sum_probs=20.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQ 687 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~ 687 (724)
|-.++.+||.+-.-||.+|++|..
T Consensus 6 LEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 6 IEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 446888999999999999999875
No 194
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.52 E-value=45 Score=37.16 Aligned_cols=34 Identities=15% Similarity=0.165 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
+.+|++|+..|-++|..||.++..+..+|...--
T Consensus 73 ~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 73 AKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999998888876544
No 195
>3edu_A Beta-I spectrin, spectrin beta chain, erythrocyte; ankyrin, ankyrin-binding domain, actin capping, AC binding, cytoskeleton, disease mutation; 2.10A {Homo sapiens} PDB: 3f57_A
Probab=42.46 E-value=1.5e+02 Score=28.46 Aligned_cols=121 Identities=13% Similarity=0.079 Sum_probs=64.2
Q ss_pred HHHHHHHhhhhhHHHHH----HHH------HHhhh-hhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 580 EELAIQRLEITKNDLRH----RIA------KEARG-NAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~~~----~~~------~~~~~-n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le 648 (724)
=+..+.+.+.-+.+|.. ||. .+... +----..+..|...++.+-..|.+-+..=+.+|+.-..++....
T Consensus 36 v~~l~~k~~~f~~el~~~~~~~v~~v~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~L~~~~~~R~~~L~~a~~~~~F~~ 115 (218)
T 3edu_A 36 VTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFY 115 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888754 232 11100 00112456777778888877777777777777766555554322
Q ss_pred HhhC------CCCCCCCCC-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 649 VGLS------MSSGQFSSS-RGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQR 700 (724)
Q Consensus 649 ~~l~------~~~~~~~~~-~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~ 700 (724)
.+-. .....++.+ ..=+..+++++.....+|.++..++.+|..|...-.+-.
T Consensus 116 ~~~e~~~Wl~ek~~~l~~~~g~dl~~v~~l~~~h~~~e~dL~~~~~~v~~l~~~a~~L~ 174 (218)
T 3edu_A 116 TGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERELHLLGVQVQQFQDVATRLQ 174 (218)
T ss_dssp HHHHHHHHHHHHHHCCC-------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2110 000111111 222456778888888888888888888888876544433
No 196
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=41.77 E-value=30 Score=24.13 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=20.6
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQK 688 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~ 688 (724)
|-.|+.+||.+-..||.+|++|..-
T Consensus 6 LEdKVEeLl~~~~~Le~EV~RLk~l 30 (34)
T 3c3f_A 6 IEXKLEXILSXLYHXENEXARIXKL 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3467889999999999999998753
No 197
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=41.73 E-value=46 Score=24.67 Aligned_cols=31 Identities=19% Similarity=0.407 Sum_probs=21.4
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 608 LQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
|++-+..|...+.+|-.+||.-+..|+.+|+
T Consensus 10 lvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 10 MISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666777777777777777777777665
No 198
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=40.87 E-value=2.7e+02 Score=27.22 Aligned_cols=121 Identities=10% Similarity=0.081 Sum_probs=73.9
Q ss_pred chHHHHHHHhhhhhHHHHHHHH---------HHhhhhhhhh-hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 578 GEEELAIQRLEITKNDLRHRIA---------KEARGNAILQ-ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAAL 647 (724)
Q Consensus 578 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~n~~~~-~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~l 647 (724)
..=+.++.|.++-..+|..+-. .+.....--. ..+..|...+.++-..|.+-+..=+.+|++...++..+
T Consensus 48 ~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~ 127 (250)
T 1quu_A 48 TEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQKRREALERMEKLLETI 127 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788898988888876532 2221111111 35667777888887788888887777777777666433
Q ss_pred HHh--------------hCCCCCCCC--CCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q 004901 648 EVG--------------LSMSSGQFS--SSRGMDSKTRAELEEIALAEADVARLKQKVAEL---HHQLNQ 698 (724)
Q Consensus 648 e~~--------------l~~~~~~~~--~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l---~~~l~~ 698 (724)
+.+ |...-..+. ....-+..+++||..+..++.++..++.++..+ +.++.+
T Consensus 128 d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v~~ll~~h~~~~~~l~~~~~~~~~i~~l~~~~~~ 197 (250)
T 1quu_A 128 DQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQFKATLPEADGERQSIMAIQNEVEK 197 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 111001111 112335589999999999998888888555544 555543
No 199
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=40.70 E-value=64 Score=38.36 Aligned_cols=37 Identities=16% Similarity=-0.007 Sum_probs=26.9
Q ss_pred ceEEEEecCC--CCceEEEEeCCHHHHHHHHHHHHHHHh
Q 004901 89 LLTVLFPDGR--DGRAFTLKAETSEDLYEWKTALELALA 125 (724)
Q Consensus 89 ~~fvit~~~~--~gr~y~fqAdSeeE~~eWi~AL~~ai~ 125 (724)
.+|.|..... +-+...|-|.+.++++.|+..|+..+.
T Consensus 104 r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~ 142 (816)
T 3qr0_A 104 KCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAY 142 (816)
T ss_dssp HEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHH
Confidence 4565544322 113458999999999999999999875
No 200
>3lbx_B Beta-I spectrin, spectrin beta chain, erythrocyte; tetramer, complex, three-helix bundle, alpha helix repeat, helical linker, actin capping; 2.80A {Homo sapiens}
Probab=39.98 E-value=1.5e+02 Score=27.69 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=68.7
Q ss_pred HHHHHHhhhhhHHHHHH---HH-HHhhhhhhhh------hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 004901 581 ELAIQRLEITKNDLRHR---IA-KEARGNAILQ------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE-- 648 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~---~~-~~~~~n~~~~------~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le-- 648 (724)
+.++++-+.-+.++..+ +. -...|+..++ ..+..|-..+++++.+|.+-...=+.+|+.=..++....
T Consensus 40 e~ll~~H~~~~~ei~~~~~~~~~l~~~G~~L~~~~~~~~~~i~~~l~~L~~~w~~L~~~w~~r~~~L~~~l~l~~F~~d~ 119 (185)
T 3lbx_B 40 ELLMKYHQGINAEIETRSKNFSACLELGESLLQRQHQASEEIREKLQQVMSRRKEMNEKWEARWERLRMLLEVCQFSRDA 119 (185)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45666666666666333 31 1112444433 457788888888888888777766666664433332111
Q ss_pred ----HhhCCCCCCC---CCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 649 ----VGLSMSSGQF---SSSRGMDSKTRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 649 ----~~l~~~~~~~---~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
.-|...-..| .++ .-...+.+||.+-..+|.++..-+.+|..|..
T Consensus 120 ~~~~~Wl~~~e~~L~~~~~g-~sl~~ve~LlkkH~~fe~~l~~~~e~i~~L~~ 171 (185)
T 3lbx_B 120 SVAEAWLIAQEPYLASGDFG-HTVDSVEKLIKRHEAFEKSTASWAERFAALEK 171 (185)
T ss_dssp HHHHHHHHHHHHHHHCCCCC-SSHHHHHHHHHHHHHHHHHHHHTHHHHHHHHS
T ss_pred HHHHHHHHHhHhhhccCCCC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Confidence 1111100111 122 23457999999999999999999999999875
No 201
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=39.94 E-value=1.8e+02 Score=25.11 Aligned_cols=25 Identities=12% Similarity=0.343 Sum_probs=15.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 614 RRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 614 ~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
.+-..++..+..|+..+..|++.|.
T Consensus 17 ~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 17 EERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455666667777777766664
No 202
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=39.92 E-value=1.3e+02 Score=25.70 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-----CCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS-----MSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAEL 692 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~-----~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l 692 (724)
.++.+...|.+....|+.++++=...-..|+..=. +.-|.+-+....+.-...|=..+..++.+|..|+.+...+
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~ 91 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERV 91 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666654444444544321 1123222233333334444455566666666666666666
Q ss_pred HHHHHHHHh
Q 004901 693 HHQLNQQRQ 701 (724)
Q Consensus 693 ~~~l~~~~~ 701 (724)
+.++..-+.
T Consensus 92 ~~~l~~lk~ 100 (107)
T 1fxk_A 92 MKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655444
No 203
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=38.26 E-value=2.7e+02 Score=26.51 Aligned_cols=105 Identities=13% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHH---HHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Q 004901 581 ELAIQRLEITKNDLRHRI---AKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQ 657 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~---~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~ 657 (724)
+..++.++.....++..+ ..+...-..--..++.+...+.++...|+.++.+++.++..-..-...++..+.
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----- 121 (284)
T 1c1g_A 47 QKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLEEAEKAAD----- 121 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Q ss_pred CCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 004901 658 FSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 658 ~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~ 702 (724)
++-.++..++..+..++..+..+...+...+..
T Consensus 122 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (284)
T 1c1g_A 122 ------------ESERGMKVIESRAQKDEEKMEIQEIQLKEAKHI 154 (284)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
No 204
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=37.77 E-value=31 Score=26.27 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 004901 681 DVARLKQKVAELHHQLNQQRQH 702 (724)
Q Consensus 681 ~v~~le~~~~~l~~~l~~~~~~ 702 (724)
+++.||++-.+|+-|||++|-.
T Consensus 14 ~l~~LEkqF~~LkEqlY~ERl~ 35 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLFRERLS 35 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556778888888889988853
No 205
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=37.45 E-value=77 Score=26.61 Aligned_cols=67 Identities=25% Similarity=0.241 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 004901 627 EQDVSRLQEQLQAERDLRAALEVGLSM-SSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHY 704 (724)
Q Consensus 627 e~~V~~L~~~L~~e~~~~~~le~~l~~-~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~ 704 (724)
++-+..|++||.-|..++.=.|+.+.. ..| +.+-+.||+|--.+=.| =..||.-||.|+.+-.+.+.
T Consensus 7 ~~rl~~L~kqL~IElkVK~GAENmi~~y~~g--------~~~drKlLaeAQqmL~D---Sk~KIe~lRmqI~k~~q~~~ 74 (81)
T 1urf_A 7 LSRVAGLEKQLAIELKVKQGAENMIQTYSNG--------STKDRKLLLTAQQMLQD---SKTKIDIIRMQLRRALQADQ 74 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--------SSCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhcc
Confidence 456889999999999999999998753 222 33457788776544333 57788899999876444433
No 206
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.12 E-value=1.3e+02 Score=32.73 Aligned_cols=31 Identities=19% Similarity=0.228 Sum_probs=22.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQLQAERD 642 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~ 642 (724)
+++.+..+.+.+.+|||.|.++|+.+++++.
T Consensus 358 ~~~~~~~l~~~~~~le~~~~~~~~~~~~~~~ 388 (487)
T 3oja_A 358 RKQAKITLEQKKKALDEQVSNGRRAHAELDG 388 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 4455557777888888888888888876553
No 207
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=36.70 E-value=1.2e+02 Score=26.17 Aligned_cols=31 Identities=13% Similarity=0.201 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le 648 (724)
.++.+...|.+....|+.++++=...-..|+
T Consensus 17 ~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 17 SYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555554333444444
No 208
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=36.14 E-value=62 Score=26.75 Aligned_cols=36 Identities=25% Similarity=0.301 Sum_probs=28.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHh
Q 004901 580 EELAIQRLEITKNDLRHRIAKEARGNAILQASLERR 615 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~ 615 (724)
=|.-|+|||.+=.-||.|.|+=.-+...-|..|++|
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqR 40 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQR 40 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466799999999999999997666666666665543
No 209
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=35.83 E-value=53 Score=25.22 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004901 676 ALAEADVARLKQKVAELHHQLNQQRQHH 703 (724)
Q Consensus 676 a~~E~~v~~le~~~~~l~~~l~~~~~~~ 703 (724)
.-+|-.|.+||+.|++|...|..+...+
T Consensus 8 efAERsV~KLek~ID~LEdeL~~eKek~ 35 (52)
T 2z5i_A 8 YHLENEVARLKKLVDDLEDELYAQKLKY 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4568889999999999999988876543
No 210
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.61 E-value=2.8e+02 Score=26.87 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004901 675 IALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 675 ia~~E~~v~~le~~~~~l~~~l 696 (724)
|..|+.+|..|......|+.+|
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~i 111 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYV 111 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444444444
No 211
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.27 E-value=46 Score=21.55 Aligned_cols=20 Identities=45% Similarity=0.506 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 004901 674 EIALAEADVARLKQKVAELH 693 (724)
Q Consensus 674 eia~~E~~v~~le~~~~~l~ 693 (724)
|-..||..|+-|+|++.+|+
T Consensus 8 endaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 8 ENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 44445555555555555553
No 212
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=34.81 E-value=83 Score=31.65 Aligned_cols=50 Identities=30% Similarity=0.440 Sum_probs=31.3
Q ss_pred HHHhhhhhhhhhh---------HHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHH
Q 004901 599 AKEARGNAILQAS---------LERRKQALHERRLALEQDV-SRLQEQLQAERDL-RAALE 648 (724)
Q Consensus 599 ~~~~~~n~~~~~~---------~~~~~~~~~~~r~~Le~~V-~~L~~~L~~e~~~-~~~le 648 (724)
++||+-|+..++. +.++=.+-.+||..-|.+| ..|.+...+|+.+ +.|++
T Consensus 127 aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeErRk~qea~~Lk~LaekrEHe~eVlqka~e 187 (240)
T 4f61_I 127 AEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIE 187 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888766665 4444445567776655555 5566666777666 55554
No 213
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=34.75 E-value=18 Score=23.38 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 674 EIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 674 eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
||..||-+---|||++..|++.+-
T Consensus 1 eidalefendaleqkiaalkqkia 24 (28)
T 3ra3_A 1 EIDALEFENDALEQKIAALKQKIA 24 (28)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHhccHHHHHHHHHHHHHHH
Confidence 456788888999999999998764
No 214
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=34.71 E-value=1.2e+02 Score=26.98 Aligned_cols=46 Identities=20% Similarity=0.319 Sum_probs=24.5
Q ss_pred HHHHHHHHHhh---hhhhhhhhHHHhHHH----------HHHHHHHHHHHHHHHHHHHH
Q 004901 593 DLRHRIAKEAR---GNAILQASLERRKQA----------LHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 593 ~~~~~~~~~~~---~n~~~~~~~~~~~~~----------~~~~r~~Le~~V~~L~~~L~ 638 (724)
+|+..|++--+ ...+|++.++-=+.. +++...+|+++|..||.|++
T Consensus 49 elk~ei~q~~~~lE~I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~Lq~q~~ 107 (110)
T 2v4h_A 49 KLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQREFN 107 (110)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444443222 455666666554443 34445556666666666654
No 215
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=34.69 E-value=62 Score=22.64 Aligned_cols=26 Identities=8% Similarity=0.231 Sum_probs=18.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQL 637 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L 637 (724)
|+-.=+.+-.+...|+.||.||++-|
T Consensus 6 ledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 6 VADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 34444566667788999999998866
No 216
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=34.20 E-value=2.2e+02 Score=24.29 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 672 LEEIALAEADVARLKQKVAELHHQ 695 (724)
Q Consensus 672 l~eia~~E~~v~~le~~~~~l~~~ 695 (724)
-.|-+-||.++.+|...+.+++..
T Consensus 69 ~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 69 TNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455556666666666555544
No 217
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.90 E-value=57 Score=25.14 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=30.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (724)
-+..+-+|..|++-|-..|..|.+++.+|+.+|.|
T Consensus 17 ~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 17 ENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46788899999999999999999999999988863
No 218
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=33.83 E-value=85 Score=21.05 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 668 TRAELEEIALAEADVARLKQKVAELHH 694 (724)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~ 694 (724)
+-+|-.|||.|-.+|+-|+-++..|++
T Consensus 4 iaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 4 IAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 446667888888888888877777765
No 219
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=33.75 E-value=96 Score=34.55 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=23.8
Q ss_pred hHHHH----HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 667 KTRAE----LEE-IALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 667 ~~~~l----l~e-ia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
.+.+| ++| ...|-++|..||.++..+..+|.+.--
T Consensus 100 ~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 100 QVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667 788 888888888888888888888776543
No 220
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=33.34 E-value=57 Score=29.19 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=17.6
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 608 LQASLERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
|.++|++-|..-+.+-.+|+-|+..|..+||
T Consensus 58 L~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq 88 (121)
T 3mq7_A 58 LMASLDAEKAQGQKKVEELEGEITTLNHKLQ 88 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666555555555555555555555554
No 221
>3ulb_A Target of rapamycin complex 2 subunit AVO1; PH domain, membrane localization, membrane protein; 1.90A {Saccharomyces cerevisiae} PDB: 3ulc_A
Probab=33.28 E-value=2.6e+02 Score=25.21 Aligned_cols=83 Identities=10% Similarity=0.089 Sum_probs=45.2
Q ss_pred EEEEEEEeCCeEEEEcCCCCCC-CCCCceeeeeeCcEEcCCCcceeeccCCc-ceEEEEec--CCCCceEEEEeCCHHHH
Q 004901 38 KKRWFILTRTSLVFFKNDPSAL-PQRGGEVNLTLGGIDLNNSGSVVVREDKK-LLTVLFPD--GRDGRAFTLKAETSEDL 113 (724)
Q Consensus 38 KKRWFVL~~~~L~yYKd~~~~~-p~~~~~~~l~L~~I~L~~~~sv~~~~~Kk-~~fvit~~--~~~gr~y~fqAdSeeE~ 113 (724)
..|-++++|..+.+--...... ...+...+ +.++....+......+ .|-++..+ ....+.|+|-|.+..|+
T Consensus 28 ~ER~L~IDGdYIHImP~~~~~~~~~~~KTtS-----~H~s~Vv~~K~s~k~P~~FKivV~k~~~~e~KrYdfEA~s~~ea 102 (121)
T 3ulb_A 28 HERTLAIDGDYIYIVPPEGRIHWHDNVKTKS-----LHISQVVLVKKSKRVPEHFKIFVRREGQDDIKRYYFEAVSGQEC 102 (121)
T ss_dssp EEEEEEEETTEEEEECCC-------CCCCEE-----EEGGGEEEEEECSSCTTEEEEEECCTTCSSCEEEEEEESSHHHH
T ss_pred ccEEEEEcCceEEEecCCCCcccccCCcEEE-----EEEeeEEEEEecccCCCcEEEEEEccCCCCcceeEEEeCCHHHH
Confidence 5677788888877764322110 00122222 2232211111111111 22333333 33458999999999999
Q ss_pred HHHHHHHHHHHh
Q 004901 114 YEWKTALELALA 125 (724)
Q Consensus 114 ~eWi~AL~~ai~ 125 (724)
.+=+..|+..++
T Consensus 103 ~EIV~~ik~~~~ 114 (121)
T 3ulb_A 103 TEIVTRLQNLLS 114 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999885
No 222
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=33.23 E-value=1.2e+02 Score=29.49 Aligned_cols=16 Identities=25% Similarity=0.194 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 004901 623 RLALEQDVSRLQEQLQ 638 (724)
Q Consensus 623 r~~Le~~V~~L~~~L~ 638 (724)
-..|.+|+..|-.||+
T Consensus 22 V~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 22 VANLVNENFVLSEKLD 37 (190)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444444
No 223
>3pk1_B Apoptosis regulator BAX; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens} PDB: 3pl7_C 2xa0_C
Probab=32.84 E-value=20 Score=25.09 Aligned_cols=16 Identities=38% Similarity=0.374 Sum_probs=14.1
Q ss_pred HHHHHHhhhhhhhhhh
Q 004901 596 HRIAKEARGNAILQAS 611 (724)
Q Consensus 596 ~~~~~~~~~n~~~~~~ 611 (724)
.||+.|.-+|+-||--
T Consensus 17 ~~IgDEld~N~ELQrm 32 (34)
T 3pk1_B 17 KRIGDELDSNMELQRM 32 (34)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcccHHHHHh
Confidence 5899999999999953
No 224
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=32.75 E-value=38 Score=25.23 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q 004901 675 IALAEADVARLKQ 687 (724)
Q Consensus 675 ia~~E~~v~~le~ 687 (724)
||-||.+|++||.
T Consensus 40 ianlekdianler 52 (56)
T 3he4_A 40 IANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333444444333
No 225
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=32.29 E-value=53 Score=22.81 Aligned_cols=24 Identities=21% Similarity=0.195 Sum_probs=19.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHH
Q 004901 665 DSKTRAELEEIALAEADVARLKQK 688 (724)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~~ 688 (724)
-.|+.+||.+=..||.+|++|+.-
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~l 29 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXL 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 457889999999999999998753
No 226
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=31.72 E-value=60 Score=29.26 Aligned_cols=32 Identities=34% Similarity=0.516 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 668 TRAELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 668 ~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
-+++|+...-.|.||..|..++.+|+.+|..+
T Consensus 6 ~~~~~~~~~~~e~e~~~l~~~~~el~~~l~~~ 37 (125)
T 1joc_A 6 RRALLERCLKGEGEIEKLQTKVLELQRKLDNT 37 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888888888877543
No 227
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=31.45 E-value=1.7e+02 Score=26.31 Aligned_cols=52 Identities=25% Similarity=0.281 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Q 004901 625 ALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQK 688 (724)
Q Consensus 625 ~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~ 688 (724)
.|.+|+.+|..+|.. +|+=|..|..+. =...+.++..||+.|+.+|.+|..+
T Consensus 7 ~~K~Eiq~L~drLD~---~~rKlaaa~~rg---------d~~~i~qf~~E~~~l~k~I~~lk~~ 58 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDA---IRHQQADLSLVE---------AADKYAELEKEKATLEAEIARLREV 58 (123)
T ss_dssp SHHHHHHHHHHHHHH---HHHHHHHSCTTT---------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHhCC---------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999975 566666665532 2345566777777777777776654
No 228
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=31.34 E-value=1.8e+02 Score=32.55 Aligned_cols=59 Identities=17% Similarity=0.201 Sum_probs=40.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccccccccccccC
Q 004901 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSDACDRYQNVQNHN 721 (724)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~~~~~~~~~~~~~~ 721 (724)
+|-.++..-|..|++|+.-|.++=.+|.-|...+.-|+..+-|+-.-+......+..|+
T Consensus 121 yLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~ 179 (562)
T 3ghg_A 121 VLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYE 179 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHH
Confidence 45566677778888888888888888888888888888777766544444444444443
No 229
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=30.83 E-value=80 Score=37.39 Aligned_cols=38 Identities=3% Similarity=-0.090 Sum_probs=28.4
Q ss_pred ceEEEEecCCC--CceEEEEeCCHHHHHHHHHHHHHHHhc
Q 004901 89 LLTVLFPDGRD--GRAFTLKAETSEDLYEWKTALELALAQ 126 (724)
Q Consensus 89 ~~fvit~~~~~--gr~y~fqAdSeeE~~eWi~AL~~ai~~ 126 (724)
.||.|...... -+.+.|.|.+.++++.|+..|+..+..
T Consensus 97 ~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~~~ 136 (799)
T 2zkm_X 97 KTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALVKH 136 (799)
T ss_dssp TEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHHHC
T ss_pred ceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 46666543221 236889999999999999999988863
No 230
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=30.69 E-value=72 Score=27.52 Aligned_cols=35 Identities=34% Similarity=0.484 Sum_probs=26.7
Q ss_pred hhhhhHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 004901 607 ILQASLERRKQALH---ERRLALEQDVSRLQEQLQAER 641 (724)
Q Consensus 607 ~~~~~~~~~~~~~~---~~r~~Le~~V~~L~~~L~~e~ 641 (724)
-|.+||++-|..-+ .+-.+|+-||..|..+||+=.
T Consensus 50 tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 50 TLQESLEKKVSQALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58889998877654 445668999999999888644
No 231
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=30.69 E-value=1.6e+02 Score=21.60 Aligned_cols=16 Identities=38% Similarity=0.318 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 004901 671 ELEEIALAEADVARLK 686 (724)
Q Consensus 671 ll~eia~~E~~v~~le 686 (724)
|-.|||-||.+|+.-|
T Consensus 36 lrdeiarlenevashe 51 (52)
T 3he5_B 36 LRDEIARLENEVASHE 51 (52)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3345666665555433
No 232
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=30.15 E-value=54 Score=35.71 Aligned_cols=47 Identities=17% Similarity=0.124 Sum_probs=35.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 004901 612 LERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQF 658 (724)
Q Consensus 612 ~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~ 658 (724)
+..|++.+.++..+++.+++.+++||.+|...|+-|.+.+....|.+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 15 LRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 45566677777777888888889999999999998888875544533
No 233
>3kbt_A Beta-I spectrin, spectrin beta chain, erythrocyte; complex, spectrin, spectrin repeat, three helix bundle, ANKY binding, disease mutation, structural protein, ZU5 sandwich; 2.75A {Homo sapiens} PDB: 3kbu_A
Probab=29.78 E-value=4.3e+02 Score=26.48 Aligned_cols=119 Identities=15% Similarity=0.111 Sum_probs=59.4
Q ss_pred HHHHHHHhhhhhHHHHH-H---HHH-Hhhhhhhhh------hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 580 EELAIQRLEITKNDLRH-R---IAK-EARGNAILQ------ASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALE 648 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~~~-~---~~~-~~~~n~~~~------~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le 648 (724)
=+..+.+.+.-+.++.. + |.. -..|+..++ ..+..+...++.+-..|.+-+..-+.+|+....++....
T Consensus 145 v~~l~~~~~~f~~el~~~~~~~v~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~a~~~~~f~~ 224 (326)
T 3kbt_A 145 VTLLRDKFRDFARETGAIGQERVDNVNAFIERLIDAGHSEAATIAEWKDGLNEMWADLLELIDTRMQLLAASYDLHRYFY 224 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778777777654 2 311 011122222 246777778888888888888888888877665555432
Q ss_pred Hh------hCCCCCCCCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 649 VG------LSMSSGQFSS-SRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 649 ~~------l~~~~~~~~~-~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (724)
.+ |......++. ...=+..++++|.....+|.+|..++.+|..|...-.+
T Consensus 225 ~~~e~~~Wl~ek~~~L~~~~~~d~~~~~~ll~~~~~~e~~l~~~~~~v~~l~~~a~~ 281 (326)
T 3kbt_A 225 TGAEILGLIDEKHRELPEDVGLDASTAESFHRVHTAFERDVHLLGVQVQQFQDVATR 281 (326)
T ss_dssp HHHHHHHHHHHHHHC---------------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0000001111 12223467888888889999999999999888654333
No 234
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=29.59 E-value=86 Score=30.69 Aligned_cols=19 Identities=42% Similarity=0.629 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004901 674 EIALAEADVARLKQKVAEL 692 (724)
Q Consensus 674 eia~~E~~v~~le~~~~~l 692 (724)
+|..++++|+.|++....|
T Consensus 123 ~ie~l~eEi~~LkeEn~eL 141 (209)
T 2wvr_A 123 EIEQKDNEIARLKKENKEL 141 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 235
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=29.56 E-value=49 Score=24.50 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004901 676 ALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 676 a~~E~~v~~le~~~~~l~~~l~ 697 (724)
..||.-|..||.|+.+|+.+|.
T Consensus 19 e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 19 EDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999998874
No 236
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=29.10 E-value=2.5e+02 Score=31.24 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 004901 666 SKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQ 701 (724)
Q Consensus 666 ~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~ 701 (724)
..+.+|++|+..|-++|..||.++.++..+|...--
T Consensus 116 ~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 116 PQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366789999999999999999999988888876543
No 237
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=29.03 E-value=81 Score=23.13 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=22.6
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 004901 610 ASLERRKQALHERRLALEQDVSRLQEQ 636 (724)
Q Consensus 610 ~~~~~~~~~~~~~r~~Le~~V~~L~~~ 636 (724)
..||.|-+.++.+-.+||+-|.-||..
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888999999999999988764
No 238
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.95 E-value=52 Score=27.81 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 673 EEIALAEADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 673 ~eia~~E~~v~~le~~~~~l~~~l~~ 698 (724)
.|+..||..|..||.++..|..+|..
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45677888888888888888888753
No 239
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=28.65 E-value=1.2e+02 Score=23.93 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 004901 617 QALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 617 ~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
.|-..||.-=.+....|+.+.+
T Consensus 12 ~AA~R~R~KKk~~~~~le~~~~ 33 (63)
T 1ci6_A 12 TAATRYRQKKRAEQEALTGECK 33 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556555555555555443
No 240
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=28.52 E-value=3.4e+02 Score=24.77 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=8.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHH
Q 004901 580 EELAIQRLEITKNDLRHRIAK 600 (724)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~ 600 (724)
+|..|+++ -..|-.||.+
T Consensus 26 ~ee~L~~v---A~~vd~km~e 43 (138)
T 3hnw_A 26 SEEYLQRV---ASYINNKITE 43 (138)
T ss_dssp CHHHHHHH---HHHHHHHHHH
T ss_pred cHHHHHHH---HHHHHHHHHH
Confidence 34444443 3445555543
No 241
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=28.07 E-value=99 Score=26.00 Aligned_cols=32 Identities=22% Similarity=0.497 Sum_probs=26.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (724)
|-.|++..+..|++|.-+|.-|+++-..|..+
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e 42 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQE 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999998887775543
No 242
>1s1c_X RHO-associated, coiled-coil containing protein kinase 1; GTPase, RHO kinase, ROCK, signaling protein; HET: GNP; 2.60A {Homo sapiens} SCOP: h.1.27.1
Probab=27.64 E-value=2.2e+02 Score=23.29 Aligned_cols=50 Identities=20% Similarity=0.379 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 004901 593 DLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVS----RLQEQLQAERDLRA 645 (724)
Q Consensus 593 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~----~L~~~L~~e~~~~~ 645 (724)
+|+..|.--.+++.-|=..+....+.+...+ +.++. .|.++|+.|+-|..
T Consensus 3 ~L~k~i~~l~~E~eel~~klk~~~ee~~~~~---eee~~~~~~~lek~L~~E~~LK~ 56 (71)
T 1s1c_X 3 MLTKDIEILRRENEELTEKMKKAEEEYKLEK---EEEISNLKAAFEKNINTERTLKT 56 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554444444333333332222222222 44555 77777777776543
No 243
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.60 E-value=1e+02 Score=24.01 Aligned_cols=21 Identities=33% Similarity=0.389 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKV 689 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~ 689 (724)
.+|-.+|..|+.+|..|++.+
T Consensus 39 ~~L~~~i~~L~~e~~~Lk~~l 59 (61)
T 1t2k_D 39 GQLQSEVTLLRNEVAQLKQLL 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 456677777777777777665
No 244
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=26.51 E-value=3.5e+02 Score=24.18 Aligned_cols=29 Identities=14% Similarity=0.378 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 004901 675 IALAEADVARLKQKVAELHHQLNQQRQHH 703 (724)
Q Consensus 675 ia~~E~~v~~le~~~~~l~~~l~~~~~~~ 703 (724)
|.-|+.+|..|.+++.+.-..+-+.|.++
T Consensus 73 vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~ 101 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQDASAEVERLRREN 101 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44455555555555555555555554443
No 245
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=26.30 E-value=13 Score=24.12 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 004901 674 EIALAEADVARLKQK 688 (724)
Q Consensus 674 eia~~E~~v~~le~~ 688 (724)
++.-||.+|-+||-+
T Consensus 9 nvkrlekevgklege 23 (28)
T 4dac_A 9 NVKRLEKEVGKLEGE 23 (28)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhhhhhh
Confidence 333344444444433
No 246
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=26.17 E-value=1.9e+02 Score=22.97 Aligned_cols=55 Identities=27% Similarity=0.233 Sum_probs=30.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhhhhhhhhhHH---HhHHHHHHHHHHHHHHHHHHHH
Q 004901 581 ELAIQRLEITKNDLRHRIAKEARGNAILQASLE---RRKQALHERRLALEQDVSRLQE 635 (724)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~---~~~~~~~~~r~~Le~~V~~L~~ 635 (724)
|-.|--||....++++-++-..++=+-+...++ +|-..-++.=..||+.|.+|+.
T Consensus 5 ~~~~~~le~kl~~lEnIv~~l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 5 EKLLAELEGKLRVFENIVAVLNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 556777899999999988754443333333333 2211112222336666666654
No 247
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=26.09 E-value=1.4e+02 Score=25.20 Aligned_cols=28 Identities=21% Similarity=0.349 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 669 RAELEEIALAEADVARLKQKVAELHHQL 696 (724)
Q Consensus 669 ~~ll~eia~~E~~v~~le~~~~~l~~~l 696 (724)
+.|-.+|..++++|+.|++....|+--.
T Consensus 41 ~~Lh~~ie~~~eEi~~Lk~en~~L~elA 68 (83)
T 1wlq_A 41 EKLHKEIEQKDSEIARLRKENKDLAEVA 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566667777788888887777776433
No 248
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=26.02 E-value=78 Score=22.15 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=19.8
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQ 687 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~ 687 (724)
|-.|+.+||.+=.-||.+|++|+.
T Consensus 6 LEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 6 IEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHH
Confidence 346788899999999999999875
No 249
>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A
Probab=25.95 E-value=3.2e+02 Score=24.39 Aligned_cols=91 Identities=14% Similarity=0.207 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHH
Q 004901 594 LRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELE 673 (724)
Q Consensus 594 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~ 673 (724)
.|.-+.-|-+...|++..-++|-+.|.+-|.+=+.|++..+.+-++|.. ......++ +.-.....+...|++-|.
T Consensus 12 IQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk--~~e~~~~g---~~~~~~~~~e~eT~~ki~ 86 (119)
T 4efa_G 12 IATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELK--EFEQKNAG---GVGELEKKAEAGVQGELA 86 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHC------------CTTSSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhcC---CchHHHHHHHHHHHHHHH
Confidence 4555566667777887777888899999999999999999876666554 33333232 222344667777776665
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 004901 674 EIALAEADVARLKQKVAEL 692 (724)
Q Consensus 674 eia~~E~~v~~le~~~~~l 692 (724)
+| ...+..-...|+++
T Consensus 87 ~i---~~~~~~~k~~Vv~~ 102 (119)
T 4efa_G 87 EI---KKIAEKKKDDVVKI 102 (119)
T ss_dssp HH---HHHHHHTHHHHHHH
T ss_pred HH---HHHHHHhHHHHHHH
Confidence 54 45555566666554
No 250
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=25.48 E-value=81 Score=22.04 Aligned_cols=23 Identities=30% Similarity=0.335 Sum_probs=18.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 004901 665 DSKTRAELEEIALAEADVARLKQ 687 (724)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~ 687 (724)
-.++.+||.+=..||.+|.+|..
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHH
Confidence 45778888888888888888865
No 251
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=24.93 E-value=98 Score=21.61 Aligned_cols=26 Identities=19% Similarity=0.119 Sum_probs=20.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHH
Q 004901 664 MDSKTRAELEEIALAEADVARLKQKV 689 (724)
Q Consensus 664 ~~~~~~~ll~eia~~E~~v~~le~~~ 689 (724)
|-.++.+||.+=.-||.+|.+|..-+
T Consensus 6 LEdkVEeLl~~~~~Le~eV~RL~~ll 31 (34)
T 2hy6_A 6 LADAVEELASANYHLANAVARLAKAV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34678889999999999999987643
No 252
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=24.88 E-value=79 Score=28.45 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=40.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcc
Q 004901 663 GMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQQRQHHYGSLSD 709 (724)
Q Consensus 663 ~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~~~~~~~~s~~~ 709 (724)
.|..|+.++|.-|--+|.||++|++-|-.|-.+|.+.-|+...++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~~~aN~T~~aL~~ 64 (125)
T 4g2k_A 18 QIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLRRLANQTAKSLEL 64 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999999888877655543
No 253
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=24.86 E-value=1.7e+02 Score=28.89 Aligned_cols=30 Identities=13% Similarity=0.224 Sum_probs=17.7
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 611 SLERRKQALHERRLALEQDVSRLQEQLQAE 640 (724)
Q Consensus 611 ~~~~~~~~~~~~r~~Le~~V~~L~~~L~~e 640 (724)
=|...|...++.+..|.+++.++++.+..|
T Consensus 183 lLNeKK~KIR~lq~~Ll~~~~~~~~~~~~~ 212 (213)
T 1ik9_A 183 VLNEKKTKIRSLHNKLLNAAQEREKDIKQE 212 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhhHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 345555566666666666666666665543
No 254
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=24.63 E-value=3.4e+02 Score=23.35 Aligned_cols=43 Identities=35% Similarity=0.452 Sum_probs=28.7
Q ss_pred hhhhhhhhh-HHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Q 004901 603 RGNAILQAS-LERRKQALHERRLALEQDVSRLQEQLQ-AERDLRA 645 (724)
Q Consensus 603 ~~n~~~~~~-~~~~~~~~~~~r~~Le~~V~~L~~~L~-~e~~~~~ 645 (724)
+.||+=.+. ++...+...+++..+|+||..|+++++ -|-+|-.
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~ 62 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQ 62 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444332 345566778889999999999999886 3444443
No 255
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=23.95 E-value=2.9e+02 Score=23.15 Aligned_cols=62 Identities=26% Similarity=0.230 Sum_probs=36.4
Q ss_pred HHHHhhhhhHHHHHHHHHHhhhhhhhhhhHHHhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q 004901 583 AIQRLEITKNDLRHRIAKEARGNAILQASLERRKQALHERRLALEQDVSRLQEQLQ-AERDLRAALE 648 (724)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~-~e~~~~~~le 648 (724)
-|+.+=.+=.-||-.|.+-=-.|+.|... .+.++..|.+|.++..+|+.+.. -+..+|..|-
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L~~e----~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLg 76 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSLSQE----VQNAQHQREELERENNHLKEQQNGWQERLQALLG 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444344444555555444456555443 44667778889999998876654 3445555553
No 256
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=22.95 E-value=2.9e+02 Score=22.61 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHH
Q 004901 632 RLQEQLQAERDLRA 645 (724)
Q Consensus 632 ~L~~~L~~e~~~~~ 645 (724)
.|.++|+.|+-|..
T Consensus 43 ~lek~L~~E~~LK~ 56 (71)
T 1uix_A 43 QFEKQLLTERTLKT 56 (71)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777776543
No 257
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=22.85 E-value=1.1e+02 Score=32.38 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSSGQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQ 695 (724)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~le~~l~~~~~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~ 695 (724)
..+.+.+|++++.+-.. .|.. .+.+++.|-+.|..++..|.+|+++|..|..+
T Consensus 3 ~~~~~~~~~~~~~~~e~---~i~~--------------~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~~ 55 (323)
T 1lwu_C 3 GQKTVQKILEEVRILEQ---IGVS--------------HDAQIQELSEMWRVNQQFVTRLQQQLVDIRQT 55 (323)
T ss_dssp --CHHHHHHHHHHHHHH---HHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHhc--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777665321 1111 13344445555555555555555555555443
No 258
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=22.69 E-value=64 Score=27.40 Aligned_cols=30 Identities=23% Similarity=0.387 Sum_probs=19.5
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 609 QASLERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 609 ~~~~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
+.+|+.|-++|++.+.+|++++..+..+|.
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~ 32 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLK 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666677777777777777766653
No 259
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=22.67 E-value=1.1e+02 Score=25.19 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=22.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 667 KTRAELEEIALAEADVARLKQKVAELHHQLN 697 (724)
Q Consensus 667 ~~~~ll~eia~~E~~v~~le~~~~~l~~~l~ 697 (724)
.++.|-.++..++.++..|+++...|..+|.
T Consensus 48 YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 48 YIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777777777777777777777764
No 260
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=22.57 E-value=3.6e+02 Score=23.01 Aligned_cols=36 Identities=33% Similarity=0.417 Sum_probs=25.9
Q ss_pred hhhhhhhhh-HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 603 RGNAILQAS-LERRKQALHERRLALEQDVSRLQEQLQ 638 (724)
Q Consensus 603 ~~n~~~~~~-~~~~~~~~~~~r~~Le~~V~~L~~~L~ 638 (724)
+.||+=.+. ++...+...++...+|++|.-|+++++
T Consensus 18 ~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 18 KENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455544432 345566778888899999999999886
No 261
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=22.56 E-value=1.7e+02 Score=23.19 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 004901 618 ALHERRLALEQDVSRLQEQLQAERDLRAALEVGLS 652 (724)
Q Consensus 618 ~~~~~r~~Le~~V~~L~~~L~~e~~~~~~le~~l~ 652 (724)
+++..=..|.||..++++=|.+|...|.-||..+-
T Consensus 11 alkDev~eLk~e~k~~k~~le~eqraRk~LE~~vr 45 (61)
T 3l4f_A 11 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVR 45 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555667889999999999999999999998764
No 262
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.20 E-value=1e+02 Score=21.57 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHH
Q 004901 665 DSKTRAELEEIALAEADVARLKQ 687 (724)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~ 687 (724)
-.|+.+||.+-.-+|.+|++|..
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Confidence 45778888888888888888865
No 263
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=22.07 E-value=3.2e+02 Score=29.20 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 626 LEQDVSRLQEQLQAERDLRAALEVGLSMSS-GQFSSSRGMDSKTRAELEEIALAEADVARLKQKVAELHHQLNQ 698 (724)
Q Consensus 626 Le~~V~~L~~~L~~e~~~~~~le~~l~~~~-~~~~~~~~~~~~~~~ll~eia~~E~~v~~le~~~~~l~~~l~~ 698 (724)
-+++|..|+..++.++.- .-.+.. +.++ -....++++-++..+.-..++|+.++.-|+.-|.+
T Consensus 328 k~~~v~~~~~~~~~~~~~------~~~~~~~~~~~----~~~~~~e~~~~~~~~~~~~~~~~~q~~~~~~~~~~ 391 (406)
T 4dyl_A 328 RQEMVTQLQQELRNEEEN------THPRERVQLLG----KRQVLQEALQGLQVALCSQAKLQAQQELLQTKLEH 391 (406)
T ss_dssp HHHHHHHHHHHHHHHHHH------SCTTCGGGGHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhc------CCcchHHHHHh----HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 457888888888877421 001000 0010 11234677778888888888888888888777754
No 264
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=21.61 E-value=3.5e+02 Score=22.50 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=24.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 665 DSKTRAELEEIALAEADVARLKQKVAELH 693 (724)
Q Consensus 665 ~~~~~~ll~eia~~E~~v~~le~~~~~l~ 693 (724)
+.++.+++.+++.++.++..++..=.+|-
T Consensus 55 ~~~~~~l~~~l~~~e~eLe~~~erWeeLe 83 (89)
T 2lw1_A 55 HEQTQKVLADMAAAEQELEQAFERWEYLE 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999888887766653
No 265
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=21.26 E-value=44 Score=22.28 Aligned_cols=17 Identities=47% Similarity=0.517 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 004901 675 IALAEADVARLKQKVAE 691 (724)
Q Consensus 675 ia~~E~~v~~le~~~~~ 691 (724)
||.||..|+-|||+-..
T Consensus 2 iaaleqkiaaleqkcaa 18 (32)
T 4g1a_A 2 IAALEQKIAALEQKCAA 18 (32)
T ss_dssp CHHHHHHHHHHHHHTSS
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 45566666666655443
No 266
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=21.17 E-value=1.6e+02 Score=26.71 Aligned_cols=33 Identities=30% Similarity=0.556 Sum_probs=26.1
Q ss_pred hhhhhHHHhHH------HHHHHHHHHHHHHHHHHHHHHH
Q 004901 607 ILQASLERRKQ------ALHERRLALEQDVSRLQEQLQA 639 (724)
Q Consensus 607 ~~~~~~~~~~~------~~~~~r~~Le~~V~~L~~~L~~ 639 (724)
.+|+-|+..+. .+...|..|+..|+.|+.++.+
T Consensus 48 ~~qsele~k~aeLe~leeL~~ki~eL~~kvA~le~e~~~ 86 (125)
T 2pms_C 48 PLQSKLDAKKAKLSKLEELSDKIDELDAEIAKLEDQLKA 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 46777776554 5788899999999999998874
No 267
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.11 E-value=3.6e+02 Score=23.10 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 004901 671 ELEEIALAEADVARLKQKVAELHHQLNQQ 699 (724)
Q Consensus 671 ll~eia~~E~~v~~le~~~~~l~~~l~~~ 699 (724)
+=.+|..||..+.+++.++.+|+.+|++-
T Consensus 82 ie~~i~~le~~~~~l~~~l~~lk~~l~~~ 110 (117)
T 2zqm_A 82 LEVRLNALERQEKKLNEKLKELTAQIQSA 110 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555555543
No 268
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=20.92 E-value=1.5e+02 Score=35.98 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=18.5
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHH
Q 004901 608 LQASLERRKQALHERRLALEQDVSRLQE 635 (724)
Q Consensus 608 ~~~~~~~~~~~~~~~r~~Le~~V~~L~~ 635 (724)
|+..-..=.++.++|..+|.+++.||++
T Consensus 856 L~~~W~~Le~ae~eRe~~L~~el~Rqe~ 883 (1010)
T 1g8x_A 856 IDSTWSALEKAEQEHAEALRIELKRQKK 883 (1010)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455556777888888888777544
Done!