BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 004904
         (724 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9UKV3|ACINU_HUMAN Apoptotic chromatin condensation inducer in the nucleus OS=Homo
            sapiens GN=ACIN1 PE=1 SV=2
          Length = 1341

 Score =  100 bits (250), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 79/122 (64%), Gaps = 10/122 (8%)

Query: 487  DTLQPSMKRNFSRSDSAVS---DDTPKERIVPPSPKSP-TNSLRIDHFVRPFTLRAVQEL 542
            DTL    +R+ S+  S VS   DD  +   VP  P+   +N + I + VRPFTL  ++EL
Sbjct: 975  DTL---TRRSISQQKSGVSITIDDPVRTAQVPSPPRGKISNIVHISNLVRPFTLGQLKEL 1031

Query: 543  LGKTGTFT--SFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVDPQ 600
            LG+TGT    +FW+D IK+HC+VTYS+VEEA+ TR AL+ ++WP +N  + L A++ +  
Sbjct: 1032 LGRTGTLVEEAFWIDKIKSHCFVTYSTVEEAVATRTALHGVKWPQSN-PKFLCADYAEQD 1090

Query: 601  EV 602
            E+
Sbjct: 1091 EL 1092



 Score = 47.0 bits (110), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/29 (65%), Positives = 23/29 (79%)

Query: 683  PPIVTLDDLFRKTKATPRIYYLPLSEEQV 711
            PP   LDDLFRKTKA P IY+LPL++ Q+
Sbjct: 1206 PPAKLLDDLFRKTKAAPCIYWLPLTDSQI 1234



 Score = 36.6 bits (83), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 8   LDNRPIDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIE 50
           LD +P+   +VT+LK  L++R L  SG+K  L++ L  A+ +E
Sbjct: 67  LDGKPLQALRVTDLKAALEQRGLAKSGQKSALVKRLKGALMLE 109


>sp|Q9JIX8|ACINU_MOUSE Apoptotic chromatin condensation inducer in the nucleus OS=Mus
            musculus GN=Acin1 PE=1 SV=3
          Length = 1338

 Score = 49.7 bits (117), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 24/32 (75%)

Query: 683  PPIVTLDDLFRKTKATPRIYYLPLSEEQVAAK 714
            PP   LDDLFRKTKA P IY+LPL+E Q+  K
Sbjct: 1205 PPAKLLDDLFRKTKAAPCIYWLPLTESQIVQK 1236



 Score = 37.4 bits (85), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 8   LDNRPIDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIE 50
           LD +P+   +VT+LK  L++R L  SG+K  L++ L  A+ +E
Sbjct: 67  LDGKPLQALRVTDLKAALEQRGLAKSGQKSALVKRLKGALMLE 109


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.126    0.349 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 284,643,888
Number of Sequences: 539616
Number of extensions: 14063780
Number of successful extensions: 153971
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 2596
Number of HSP's that attempted gapping in prelim test: 82513
Number of HSP's gapped (non-prelim): 33375
length of query: 724
length of database: 191,569,459
effective HSP length: 125
effective length of query: 599
effective length of database: 124,117,459
effective search space: 74346357941
effective search space used: 74346357941
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 65 (29.6 bits)