Query 004904
Match_columns 724
No_of_seqs 155 out of 227
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 09:21:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004904.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004904hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a8x_B HOOK-like, isoform A; t 99.6 2.3E-16 7.8E-21 120.6 1.5 38 681-718 3-40 (40)
2 2wbr_A GW182, gawky, LD47780P; 99.3 1.9E-12 6.4E-17 113.1 8.3 85 519-607 4-88 (89)
3 1why_A Hypothetical protein ri 99.3 8.2E-12 2.8E-16 103.6 10.8 80 516-599 11-92 (97)
4 2ytc_A PRE-mRNA-splicing facto 99.3 6.4E-12 2.2E-16 101.2 8.4 78 516-597 6-84 (85)
5 2cpj_A Non-POU domain-containi 99.3 8.8E-12 3E-16 103.8 9.4 79 517-599 10-88 (99)
6 1p27_B RNA-binding protein 8A; 99.3 1.1E-11 3.7E-16 103.9 9.7 81 515-599 16-102 (106)
7 2dnz_A Probable RNA-binding pr 99.3 1.8E-11 6E-16 100.5 10.7 76 519-598 2-83 (95)
8 2la6_A RNA-binding protein FUS 99.3 1.7E-11 6E-16 102.0 10.5 81 514-598 5-99 (99)
9 2cph_A RNA binding motif prote 99.3 1.6E-11 5.3E-16 102.8 10.2 80 516-599 9-96 (107)
10 2dnm_A SRP46 splicing factor; 99.3 1.1E-11 3.7E-16 103.6 9.2 81 515-599 6-92 (103)
11 3lqv_A PRE-mRNA branch site pr 99.3 2E-11 6.7E-16 103.9 10.9 81 519-603 5-88 (115)
12 2e5h_A Zinc finger CCHC-type a 99.3 1.3E-11 4.5E-16 101.0 9.4 79 515-597 9-93 (94)
13 1x4a_A Splicing factor, argini 99.3 2.4E-11 8.2E-16 102.8 11.2 82 514-599 14-98 (109)
14 2dnh_A Bruno-like 5, RNA bindi 99.3 2E-11 6.7E-16 102.1 10.5 81 518-599 11-96 (105)
15 1x5u_A Splicing factor 3B subu 99.3 1.8E-11 6.3E-16 102.3 10.2 82 515-600 8-95 (105)
16 3mdf_A Peptidyl-prolyl CIS-tra 99.3 1.5E-11 5E-16 98.8 9.0 76 518-597 3-84 (85)
17 1x5p_A Negative elongation fac 99.3 1.6E-11 5.4E-16 102.2 9.5 75 519-599 12-86 (97)
18 2dnq_A RNA-binding protein 4B; 99.3 2E-11 6.9E-16 100.0 10.0 75 518-598 4-78 (90)
19 4fxv_A ELAV-like protein 1; RN 99.3 1.3E-11 4.4E-16 105.0 9.0 77 519-599 16-98 (99)
20 2cqc_A Arginine/serine-rich sp 99.3 1.4E-11 4.8E-16 100.8 8.6 78 517-598 10-93 (95)
21 2dgv_A HnRNP M, heterogeneous 99.3 1.5E-11 5.2E-16 100.3 8.6 80 516-599 2-85 (92)
22 2dgs_A DAZ-associated protein 99.3 3.9E-11 1.3E-15 99.6 11.2 79 516-599 4-88 (99)
23 1nu4_A U1A RNA binding domain; 99.2 1.4E-11 4.6E-16 101.5 8.2 79 518-600 4-89 (97)
24 3r27_A HnRNP L, heterogeneous 99.2 1.5E-11 5.1E-16 108.1 8.6 83 516-602 15-99 (100)
25 1wex_A Hypothetical protein (r 99.2 2.3E-11 7.9E-16 105.6 9.6 81 517-601 10-92 (104)
26 2la4_A Nuclear and cytoplasmic 99.2 1.2E-11 4.2E-16 103.0 7.4 76 520-599 25-100 (101)
27 2dgt_A RNA-binding protein 30; 99.2 2.5E-11 8.5E-16 99.8 9.1 77 516-598 4-80 (92)
28 2do4_A Squamous cell carcinoma 99.2 3.9E-11 1.3E-15 99.8 10.3 80 516-599 11-95 (100)
29 2xnq_A Nuclear polyadenylated 99.2 2.6E-11 9E-16 102.1 9.4 78 516-599 16-94 (97)
30 2dgp_A Bruno-like 4, RNA bindi 99.2 2.9E-11 1E-15 101.2 9.6 83 516-599 7-95 (106)
31 2kvi_A Nuclear polyadenylated 99.2 2.3E-11 7.8E-16 101.3 8.7 76 517-598 5-81 (96)
32 2do0_A HnRNP M, heterogeneous 99.2 5.5E-11 1.9E-15 100.7 10.9 78 518-599 11-93 (114)
33 2cqb_A Peptidyl-prolyl CIS-tra 99.2 2.2E-11 7.7E-16 101.3 8.2 78 518-599 8-91 (102)
34 2d9p_A Polyadenylate-binding p 99.2 4.4E-11 1.5E-15 100.0 10.0 77 519-599 12-92 (103)
35 2x1f_A MRNA 3'-END-processing 99.2 3.1E-11 1.1E-15 100.0 9.0 77 521-601 1-83 (96)
36 3bs9_A Nucleolysin TIA-1 isofo 99.2 2.9E-11 9.9E-16 97.5 8.3 77 519-599 3-85 (87)
37 2cq3_A RNA-binding protein 9; 99.2 5E-11 1.7E-15 99.6 10.0 80 516-599 9-92 (103)
38 3ex7_B RNA-binding protein 8A; 99.2 4.5E-11 1.5E-15 103.2 10.0 80 515-598 15-100 (126)
39 3ulh_A THO complex subunit 4; 99.2 3.3E-11 1.1E-15 101.1 8.8 80 515-598 22-106 (107)
40 2dnp_A RNA-binding protein 14; 99.2 3E-11 1E-15 99.0 8.4 77 517-599 4-80 (90)
41 3md1_A Nuclear and cytoplasmic 99.2 2.7E-11 9.3E-16 96.9 7.8 74 522-599 1-80 (83)
42 1whw_A Hypothetical protein ri 99.2 5.5E-11 1.9E-15 98.5 9.9 78 518-599 4-87 (99)
43 1oo0_B CG8781-PA, drosophila Y 99.2 3.8E-11 1.3E-15 101.4 9.0 82 514-599 18-105 (110)
44 4a8x_A RNA-binding protein wit 99.2 3.9E-11 1.3E-15 96.6 8.6 76 520-599 2-84 (88)
45 1wi8_A EIF-4B, eukaryotic tran 99.2 4.5E-11 1.5E-15 100.3 9.2 78 516-599 9-93 (104)
46 2cq0_A Eukaryotic translation 99.2 3.2E-11 1.1E-15 100.8 8.2 78 518-599 11-94 (103)
47 2cpf_A RNA binding motif prote 99.2 2.9E-11 9.9E-16 100.0 7.8 77 519-599 2-87 (98)
48 1x4h_A RNA-binding protein 28; 99.2 7.2E-11 2.5E-15 99.3 10.3 80 516-599 9-100 (111)
49 2dgu_A Heterogeneous nuclear r 99.2 3.8E-11 1.3E-15 100.8 8.6 78 516-599 5-82 (103)
50 3s8s_A Histone-lysine N-methyl 99.2 4.3E-11 1.5E-15 104.0 9.1 80 520-603 4-89 (110)
51 2pe8_A Splicing factor 45; RRM 99.2 7.8E-11 2.7E-15 102.4 10.6 82 520-605 6-99 (105)
52 2e5j_A Methenyltetrahydrofolat 99.2 1E-10 3.5E-15 97.3 10.9 78 518-599 15-93 (97)
53 1x5s_A Cold-inducible RNA-bind 99.2 6.5E-11 2.2E-15 98.5 9.5 78 517-598 7-90 (102)
54 2cpz_A CUG triplet repeat RNA- 99.2 4.3E-11 1.5E-15 102.1 8.6 80 516-599 19-104 (115)
55 1x4g_A Nucleolysin TIAR; struc 99.2 4.2E-11 1.4E-15 101.6 8.4 78 518-599 21-98 (109)
56 1whx_A Hypothetical protein ri 99.2 5.2E-11 1.8E-15 102.7 9.1 76 521-600 9-84 (111)
57 2jrs_A RNA-binding protein 39; 99.2 7.4E-11 2.5E-15 101.3 9.9 80 516-599 20-105 (108)
58 1p1t_A Cleavage stimulation fa 99.2 1.7E-11 5.9E-16 102.0 5.8 84 518-605 4-93 (104)
59 2ywk_A Putative RNA-binding pr 99.2 4E-11 1.4E-15 98.3 7.8 79 516-598 10-93 (95)
60 2cqi_A Nucleolysin TIAR; RNA r 99.2 6.2E-11 2.1E-15 99.1 9.0 80 516-599 9-92 (103)
61 2cq1_A PTB-like protein L; RRM 99.2 5.7E-11 1.9E-15 102.8 9.0 80 519-602 12-93 (101)
62 2bz2_A Negative elongation fac 99.2 6.9E-11 2.4E-15 104.2 9.4 75 519-599 36-110 (121)
63 1x5o_A RNA binding motif, sing 99.2 2.9E-10 9.9E-15 96.6 12.8 82 518-599 21-111 (114)
64 2kt5_A RNA and export factor-b 99.2 2.1E-10 7.2E-15 99.2 12.1 79 517-599 30-113 (124)
65 2div_A TRNA selenocysteine ass 99.2 5.5E-11 1.9E-15 98.4 8.1 79 517-599 4-93 (99)
66 2khc_A Testis-specific RNP-typ 99.2 4.7E-11 1.6E-15 102.0 7.8 77 517-597 35-117 (118)
67 2cq2_A Hypothetical protein LO 99.2 4.5E-11 1.5E-15 107.2 8.0 79 520-598 23-104 (114)
68 1x5t_A Splicing factor 3B subu 99.2 5E-11 1.7E-15 97.9 7.6 77 519-599 2-85 (96)
69 2jvo_A Nucleolar protein 3; nu 99.2 6.6E-11 2.3E-15 101.8 8.6 76 518-599 27-102 (108)
70 2dgx_A KIAA0430 protein; RRM d 99.2 7.4E-11 2.5E-15 98.4 8.6 78 517-598 4-88 (96)
71 2kxn_B Transformer-2 protein h 99.2 8.9E-11 3E-15 104.3 9.5 80 516-599 40-125 (129)
72 1wf1_A RNA-binding protein RAL 99.2 5.5E-11 1.9E-15 100.9 7.8 75 518-598 23-98 (110)
73 2dgo_A Cytotoxic granule-assoc 99.2 1.4E-10 4.9E-15 98.6 10.4 78 518-599 11-94 (115)
74 2cpd_A Apobec-1 stimulating pr 99.2 1.3E-10 4.5E-15 96.7 9.9 78 516-599 9-88 (99)
75 2lxi_A RNA-binding protein 10; 99.2 2.1E-11 7.4E-16 101.8 5.1 74 522-599 1-82 (91)
76 2e44_A Insulin-like growth fac 99.2 1E-10 3.5E-15 96.3 9.0 78 520-601 13-93 (96)
77 3ns6_A Eukaryotic translation 99.1 4.9E-11 1.7E-15 100.7 7.0 76 521-600 5-93 (100)
78 2dis_A Unnamed protein product 99.1 9.2E-11 3.2E-15 98.6 8.5 77 519-599 5-91 (109)
79 2lkz_A RNA-binding protein 5; 99.1 5.8E-11 2E-15 101.6 7.3 81 518-598 5-93 (95)
80 2err_A Ataxin-2-binding protei 99.1 7.5E-11 2.6E-15 100.9 7.8 79 517-599 24-106 (109)
81 2ad9_A Polypyrimidine tract-bi 99.1 1.4E-10 4.8E-15 104.3 9.5 84 516-603 25-110 (119)
82 2cpe_A RNA-binding protein EWS 99.1 1.4E-10 4.9E-15 98.3 9.1 78 518-599 11-102 (113)
83 2dng_A Eukaryotic translation 99.1 1.2E-10 4.2E-15 97.5 8.5 78 516-599 9-92 (103)
84 2ek1_A RNA-binding protein 12; 99.1 5.5E-11 1.9E-15 97.5 6.1 77 519-599 12-94 (95)
85 2a3j_A U1 small nuclear ribonu 99.1 1.6E-10 5.6E-15 103.8 9.7 78 519-600 26-110 (127)
86 1rk8_A CG8781-PA, CG8781-PA pr 99.1 1.3E-10 4.3E-15 105.9 9.1 79 516-598 66-150 (165)
87 4f25_A Polyadenylate-binding p 99.1 1.1E-10 3.7E-15 100.8 8.2 74 521-598 4-81 (115)
88 2nlw_A Eukaryotic translation 99.1 1.3E-10 4.5E-15 98.6 8.6 80 516-599 9-99 (105)
89 2cqh_A IGF-II mRNA-binding pro 99.1 6.3E-11 2.2E-15 97.4 6.4 77 518-599 4-82 (93)
90 2cpx_A Hypothetical protein FL 99.1 1.3E-10 4.4E-15 98.6 8.3 79 517-599 20-104 (115)
91 1x4d_A Matrin 3; structural ge 99.1 8.2E-11 2.8E-15 102.7 7.2 76 520-599 13-91 (102)
92 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.1 1.4E-10 4.9E-15 100.6 8.7 76 518-597 59-140 (140)
93 1h2v_Z 20 kDa nuclear CAP bind 99.1 1.5E-10 5.1E-15 103.8 9.0 77 519-599 36-118 (156)
94 1wg1_A KIAA1579 protein, homol 99.1 9.9E-11 3.4E-15 96.1 7.2 75 521-600 4-78 (88)
95 2j76_E EIF-4B, EIF4B, eukaryot 99.1 7.7E-11 2.6E-15 99.0 6.5 80 514-599 11-97 (100)
96 2dit_A HIV TAT specific factor 99.1 1.5E-10 5.2E-15 99.5 8.5 79 517-599 10-101 (112)
97 2dhg_A TRNA selenocysteine ass 99.1 1.5E-10 5.1E-15 96.6 8.1 78 518-599 5-89 (104)
98 1u6f_A Tcubp1, RNA-binding pro 99.1 1.8E-10 6E-15 101.0 8.6 77 519-599 39-121 (139)
99 2cq4_A RNA binding motif prote 99.1 1.6E-10 5.6E-15 98.3 8.1 77 521-602 24-106 (114)
100 2i2y_A Fusion protein consists 99.1 2.9E-10 1E-14 101.3 9.8 80 516-599 67-147 (150)
101 2m2b_A RNA-binding protein 10; 99.1 3.4E-10 1.2E-14 99.5 9.9 84 515-599 16-107 (131)
102 3zzy_A Polypyrimidine tract-bi 99.1 1.6E-10 5.6E-15 105.8 8.1 87 517-605 21-111 (130)
103 2cqd_A RNA-binding region cont 99.1 2.6E-10 9E-15 97.3 8.8 77 517-598 12-94 (116)
104 2fc9_A NCL protein; structure 99.1 2.2E-10 7.4E-15 95.4 8.0 78 518-599 11-90 (101)
105 3p5t_L Cleavage and polyadenyl 99.1 1.3E-10 4.4E-15 95.7 6.4 73 523-599 2-82 (90)
106 1x4c_A Splicing factor, argini 99.1 3E-10 1E-14 96.6 8.8 78 517-599 10-92 (108)
107 1x4f_A Matrin 3; structural ge 99.1 1.5E-10 5.2E-15 103.1 7.3 77 519-599 22-101 (112)
108 1sjq_A Polypyrimidine tract-bi 99.1 1.4E-10 4.6E-15 102.7 6.5 79 519-601 13-93 (105)
109 3v4m_A Splicing factor U2AF 65 99.1 2.8E-10 9.6E-15 98.7 8.3 81 520-604 3-101 (105)
110 2hvz_A Splicing factor, argini 99.1 2.4E-10 8.2E-15 95.2 7.5 73 523-599 1-74 (101)
111 2e5i_A Heterogeneous nuclear r 99.1 5.2E-10 1.8E-14 101.1 10.1 80 519-602 20-104 (124)
112 2cqp_A RNA-binding protein 12; 99.1 1.9E-10 6.4E-15 95.1 6.5 77 518-598 11-93 (98)
113 1x4e_A RNA binding motif, sing 99.1 1.6E-10 5.4E-15 93.3 5.8 75 519-597 2-82 (85)
114 3nmr_A Cugbp ELAV-like family 99.1 6.4E-10 2.2E-14 97.6 10.0 78 520-598 93-175 (175)
115 3n9u_C Cleavage and polyadenyl 99.1 3E-10 1E-14 104.5 8.2 82 520-605 53-142 (156)
116 2kn4_A Immunoglobulin G-bindin 99.1 4.2E-10 1.4E-14 100.3 8.9 77 519-599 67-149 (158)
117 2cpy_A RNA-binding protein 12; 99.1 5.1E-10 1.7E-14 96.3 9.1 87 519-610 12-104 (114)
118 2fy1_A RNA-binding motif prote 99.1 6.1E-10 2.1E-14 96.7 9.7 75 520-598 5-84 (116)
119 1fjc_A Nucleolin RBD2, protein 99.0 1.8E-10 6.3E-15 94.8 6.1 78 518-599 12-90 (96)
120 2krb_A Eukaryotic translation 99.0 2.4E-10 8.2E-15 92.2 6.5 69 522-594 1-80 (81)
121 1wel_A RNA-binding protein 12; 99.0 2.8E-10 9.6E-15 98.9 7.4 86 516-606 19-110 (124)
122 3ue2_A Poly(U)-binding-splicin 99.0 2.5E-10 8.5E-15 101.8 7.1 82 519-604 17-113 (118)
123 2cpi_A CCR4-NOT transcription 99.0 3.2E-10 1.1E-14 97.1 7.5 76 520-599 13-100 (111)
124 3ucg_A Polyadenylate-binding p 99.0 4.4E-10 1.5E-14 90.9 7.8 73 522-599 6-84 (89)
125 2lea_A Serine/arginine-rich sp 99.0 2.3E-10 7.7E-15 102.2 6.6 82 514-599 39-126 (135)
126 2ki2_A SS-DNA binding protein 99.0 1.3E-10 4.6E-15 94.6 4.6 73 523-600 2-80 (90)
127 3md3_A Nuclear and cytoplasmic 99.0 7.2E-10 2.5E-14 96.2 9.4 77 518-598 83-165 (166)
128 2fc8_A NCL protein; structure 99.0 5.3E-10 1.8E-14 93.0 8.2 80 516-599 9-91 (102)
129 3egn_A RNA-binding protein 40; 99.0 2.6E-10 8.8E-15 100.9 6.6 76 519-598 42-128 (143)
130 2hzc_A Splicing factor U2AF 65 99.0 4.4E-10 1.5E-14 90.5 6.8 71 520-595 4-85 (87)
131 3s7r_A Heterogeneous nuclear r 99.0 8.1E-10 2.8E-14 89.5 8.2 76 517-597 6-87 (87)
132 2qfj_A FBP-interacting repress 99.0 1E-09 3.5E-14 100.0 9.6 75 520-598 123-203 (216)
133 2f3j_A RNA and export factor b 99.0 9.3E-10 3.2E-14 102.9 9.5 82 517-602 83-169 (177)
134 1sjr_A Polypyrimidine tract-bi 99.0 8.2E-10 2.8E-14 104.9 9.1 80 523-604 47-128 (164)
135 2e5g_A U6 snRNA-specific termi 99.0 7.2E-10 2.5E-14 91.7 7.5 74 520-598 6-80 (94)
136 2dh8_A DAZ-associated protein 99.0 4.8E-10 1.6E-14 94.0 6.3 76 518-598 12-93 (105)
137 2jwn_A Embryonic polyadenylate 99.0 7E-10 2.4E-14 95.5 7.5 73 521-598 35-113 (124)
138 3s6e_A RNA-binding protein 39; 99.0 1.4E-09 4.9E-14 96.5 9.6 82 520-605 5-98 (114)
139 4f02_A Polyadenylate-binding p 99.0 8.9E-10 3E-14 103.1 8.5 80 516-599 9-94 (213)
140 2db1_A Heterogeneous nuclear r 99.0 1.2E-09 3.9E-14 95.2 8.5 87 519-610 14-108 (118)
141 2adc_A Polypyrimidine tract-bi 99.0 8.4E-10 2.9E-14 104.3 8.3 82 515-600 27-110 (229)
142 3pgw_S U1-70K; protein-RNA com 99.0 7.6E-10 2.6E-14 117.0 8.7 83 520-606 100-188 (437)
143 1s79_A Lupus LA protein; RRM, 99.0 1.3E-09 4.4E-14 93.9 8.4 74 521-599 10-88 (103)
144 3tht_A Alkylated DNA repair pr 99.0 1.1E-09 3.8E-14 114.0 9.1 79 519-598 15-97 (345)
145 1qm9_A Polypyrimidine tract-bi 99.0 1.6E-09 5.4E-14 98.6 9.0 77 519-599 117-196 (198)
146 2dgw_A Probable RNA-binding pr 99.0 1.9E-09 6.4E-14 88.2 8.4 77 517-599 5-86 (91)
147 2cqg_A TDP-43, TAR DNA-binding 98.9 2.4E-09 8.1E-14 89.5 9.0 76 518-599 11-92 (103)
148 2mss_A Protein (musashi1); RNA 98.9 1.4E-09 4.8E-14 85.9 7.2 69 524-597 1-75 (75)
149 3q2s_C Cleavage and polyadenyl 98.9 1.1E-09 3.7E-14 106.2 7.8 81 521-605 67-155 (229)
150 1fj7_A Nucleolin RBD1, protein 98.9 2.2E-09 7.4E-14 89.4 8.5 76 519-599 14-94 (101)
151 1b7f_A Protein (SXL-lethal pro 98.9 4E-09 1.4E-13 92.2 10.6 76 520-597 87-168 (168)
152 1x4b_A Heterogeneous nuclear r 98.9 1.1E-09 3.8E-14 93.4 6.9 76 519-599 24-105 (116)
153 2g4b_A Splicing factor U2AF 65 98.9 1.6E-09 5.6E-14 95.3 8.1 74 521-598 93-172 (172)
154 3pgw_A U1-A; protein-RNA compl 98.9 2.5E-09 8.4E-14 102.6 9.8 77 517-597 202-280 (282)
155 3pgw_A U1-A; protein-RNA compl 98.9 2.9E-09 1E-13 102.1 10.2 80 518-601 5-91 (282)
156 3md3_A Nuclear and cytoplasmic 98.9 1.7E-09 5.7E-14 93.9 7.8 72 523-598 1-77 (166)
157 3sde_A Paraspeckle component 1 98.9 2.1E-09 7.2E-14 103.7 9.3 78 518-599 18-95 (261)
158 1b7f_A Protein (SXL-lethal pro 98.9 2.3E-09 7.8E-14 93.8 8.5 74 521-598 2-81 (168)
159 2lmi_A GRSF-1, G-rich sequence 98.9 2.2E-09 7.6E-14 91.3 8.1 86 520-610 9-102 (107)
160 2jvr_A Nucleolar protein 3; RN 98.9 1.8E-09 6.2E-14 95.2 7.7 74 521-598 27-103 (111)
161 1fxl_A Paraneoplastic encephal 98.9 3.8E-09 1.3E-13 91.8 9.6 74 520-597 86-167 (167)
162 1fxl_A Paraneoplastic encephal 98.9 2.7E-09 9.3E-14 92.6 8.6 74 521-598 1-80 (167)
163 3beg_B Splicing factor, argini 98.9 1.6E-09 5.5E-14 93.7 6.9 73 520-597 14-86 (115)
164 2yh0_A Splicing factor U2AF 65 98.9 2.1E-09 7.3E-14 96.6 7.9 77 519-599 111-193 (198)
165 1wg5_A Heterogeneous nuclear r 98.9 5.4E-09 1.8E-13 88.6 9.6 79 520-603 13-97 (104)
166 3tyt_A Heterogeneous nuclear r 98.9 3.3E-09 1.1E-13 100.7 9.2 76 520-599 2-79 (205)
167 1uaw_A Mouse-musashi-1; RNP-ty 98.9 1.8E-09 6E-14 85.2 6.1 70 523-597 1-76 (77)
168 2adc_A Polypyrimidine tract-bi 98.9 4.4E-09 1.5E-13 99.4 9.9 77 519-599 148-227 (229)
169 2diu_A KIAA0430 protein; struc 98.9 4.7E-09 1.6E-13 93.1 9.4 75 517-599 3-83 (96)
170 2lcw_A RNA-binding protein FUS 98.4 1.6E-10 5.5E-15 98.9 0.0 77 519-599 4-94 (116)
171 2rs2_A Musashi-1, RNA-binding 98.9 3.1E-09 1.1E-13 91.2 7.8 75 520-599 23-103 (109)
172 1zrj_A E1B-55KDA-associated pr 98.9 7E-10 2.4E-14 88.3 2.7 40 11-50 8-47 (50)
173 2kvu_A MKL/myocardin-like prot 98.9 2.2E-09 7.7E-14 91.8 5.6 49 1-50 11-63 (75)
174 2hgl_A HNRPF protein, heteroge 98.9 5.3E-09 1.8E-13 95.1 8.3 84 519-607 41-132 (136)
175 4f02_A Polyadenylate-binding p 98.8 5.4E-09 1.8E-13 97.8 8.6 77 521-601 102-182 (213)
176 1qm9_A Polypyrimidine tract-bi 98.8 4.5E-09 1.5E-13 95.6 7.8 75 522-600 3-79 (198)
177 2qfj_A FBP-interacting repress 98.8 8.8E-09 3E-13 93.8 9.7 75 520-598 26-106 (216)
178 3smz_A Protein raver-1, ribonu 98.8 5.9E-09 2E-13 100.1 8.8 75 520-599 20-94 (284)
179 3nmr_A Cugbp ELAV-like family 98.8 1E-08 3.6E-13 89.9 9.6 78 521-599 2-87 (175)
180 2cjk_A Nuclear polyadenylated 98.8 5.6E-09 1.9E-13 91.5 7.7 74 521-599 86-165 (167)
181 1fje_B Nucleolin RBD12, protei 98.8 5E-09 1.7E-13 93.0 7.0 76 520-599 97-173 (175)
182 1wez_A HnRNP H', FTP-3, hetero 98.8 6.7E-09 2.3E-13 88.7 7.4 77 517-599 10-91 (102)
183 1iqt_A AUF1, heterogeneous nuc 98.8 3.5E-09 1.2E-13 83.3 5.2 69 524-597 1-75 (75)
184 3d2w_A TAR DNA-binding protein 98.8 1.1E-08 3.9E-13 85.2 8.4 79 516-600 5-84 (89)
185 2ghp_A U4/U6 snRNA-associated 98.8 7.5E-09 2.6E-13 99.7 8.0 77 518-599 206-290 (292)
186 1l3k_A Heterogeneous nuclear r 98.8 1.2E-08 4.2E-13 91.5 8.5 78 518-600 100-183 (196)
187 1l3k_A Heterogeneous nuclear r 98.8 1.1E-08 3.8E-13 91.8 7.8 79 516-599 7-91 (196)
188 3u1l_A PRE-mRNA-splicing facto 98.8 1.4E-08 4.8E-13 101.2 9.2 82 519-600 131-229 (240)
189 2yh0_A Splicing factor U2AF 65 98.8 7.7E-09 2.6E-13 93.0 6.5 75 520-599 2-87 (198)
190 3smz_A Protein raver-1, ribonu 98.8 1.4E-08 4.7E-13 97.5 8.5 79 520-602 182-266 (284)
191 1h1j_S THO1 protein; SAP domai 98.8 4.8E-09 1.6E-13 83.8 4.4 40 12-51 4-43 (51)
192 2xs2_A Deleted in azoospermia- 98.7 3.7E-09 1.3E-13 88.1 3.2 76 517-598 4-84 (102)
193 2g4b_A Splicing factor U2AF 65 98.7 1.4E-08 4.7E-13 89.4 6.6 72 521-597 3-85 (172)
194 2dha_A FLJ20171 protein; RRM d 98.7 8.9E-09 3E-13 92.2 5.3 84 520-608 21-113 (123)
195 3tyt_A Heterogeneous nuclear r 98.7 2.3E-08 7.9E-13 94.9 8.2 79 519-597 120-204 (205)
196 1jmt_A Splicing factor U2AF 35 98.7 8.4E-09 2.9E-13 89.1 4.8 51 544-598 49-104 (104)
197 2do1_A Nuclear protein HCC-1; 98.7 1.3E-08 4.3E-13 82.5 5.0 40 11-50 8-47 (55)
198 2dnn_A RNA-binding protein 12; 98.7 3.6E-08 1.2E-12 86.3 7.2 77 520-602 14-95 (109)
199 2ghp_A U4/U6 snRNA-associated 98.7 3.4E-08 1.2E-12 95.2 7.6 80 514-598 33-116 (292)
200 2dnl_A Cytoplasmic polyadenyla 98.6 4.2E-08 1.4E-12 84.3 7.1 73 519-597 5-85 (114)
201 1wf0_A TDP-43, TAR DNA-binding 98.6 2.2E-08 7.6E-13 81.6 5.1 74 520-599 3-77 (88)
202 2hgn_A Heterogeneous nuclear r 98.6 2.1E-08 7.3E-13 91.6 5.2 76 518-599 42-122 (139)
203 1fje_B Nucleolin RBD12, protei 98.6 3.9E-08 1.4E-12 87.3 6.7 77 518-599 9-90 (175)
204 2hgm_A HNRPF protein, heteroge 98.6 6.1E-08 2.1E-12 87.6 8.0 79 519-603 39-124 (126)
205 3sde_A Paraspeckle component 1 98.6 1E-07 3.6E-12 91.9 8.4 78 522-599 96-178 (261)
206 2voo_A Lupus LA protein; RNA-b 98.6 1.5E-07 5.3E-12 88.8 9.3 72 522-598 109-185 (193)
207 2cjk_A Nuclear polyadenylated 98.5 1.1E-07 3.8E-12 83.2 6.4 73 521-599 2-80 (167)
208 2d9o_A DNAJ (HSP40) homolog, s 98.4 8.7E-07 3E-11 77.1 9.8 74 519-598 7-88 (100)
209 3dxb_A Thioredoxin N-terminall 98.4 1.1E-06 3.7E-11 82.8 9.4 80 521-604 123-217 (222)
210 2j8a_A Histone-lysine N-methyl 98.3 6E-07 2E-11 84.1 5.4 79 523-605 3-101 (136)
211 1owx_A Lupus LA protein, SS-B, 98.1 1.8E-05 6.3E-10 72.1 10.8 81 518-602 14-98 (121)
212 2dnr_A Synaptojanin-1; RRM dom 97.7 8.1E-05 2.8E-09 65.6 7.1 77 517-600 2-86 (91)
213 2rnn_A E3 SUMO-protein ligase 97.6 3.5E-05 1.2E-09 70.5 4.2 39 13-51 37-75 (114)
214 1wey_A Calcipressin 1; structu 97.5 0.00017 5.7E-09 65.1 6.8 77 521-602 4-86 (104)
215 1ufw_A Synaptojanin 2; RNP dom 97.2 0.00048 1.7E-08 61.2 6.3 77 515-598 8-93 (95)
216 1jjr_A KU70, thyroid autoantig 97.2 0.00015 5.2E-09 68.9 3.2 42 10-51 58-99 (151)
217 2l9w_A U4/U6 snRNA-associated- 93.8 0.15 5E-06 47.2 7.4 75 522-602 21-100 (117)
218 1whv_A Poly(A)-specific ribonu 93.6 0.23 7.9E-06 44.8 8.1 56 521-579 15-70 (100)
219 1uw4_A UPF3X; nonsense mediate 93.3 0.21 7.2E-06 43.7 7.2 78 524-601 3-89 (91)
220 3ctr_A Poly(A)-specific ribonu 90.8 0.24 8.3E-06 44.7 4.7 54 523-579 7-60 (101)
221 3pq1_A Poly(A) RNA polymerase; 84.5 0.38 1.3E-05 52.5 2.3 62 521-586 52-114 (464)
222 1zbh_A 3'-5' exonuclease ERI1; 81.1 1.2 4E-05 44.9 4.2 41 11-51 24-64 (299)
223 2rno_A Putative DNA-binding pr 80.0 1.2 3.9E-05 40.7 3.3 36 16-51 20-55 (110)
224 2l08_A Regulator of nonsense t 77.8 4.1 0.00014 36.3 6.1 80 519-598 6-94 (97)
225 2i2y_A Fusion protein consists 76.8 1 3.6E-05 39.7 2.0 39 556-599 11-50 (150)
226 2out_A MU-like prophage flumu 70.9 1.2 4.2E-05 41.8 1.0 37 11-47 87-125 (131)
227 3d45_A Poly(A)-specific ribonu 69.4 8.6 0.0003 41.9 7.4 54 523-579 441-494 (507)
228 2w51_A Protein arMet; MANF, CD 69.0 1.2 4.2E-05 42.9 0.6 40 8-47 103-144 (158)
229 2kn4_A Immunoglobulin G-bindin 66.6 2.9 9.9E-05 36.9 2.5 26 556-581 11-36 (158)
230 1wwh_A Nucleoporin 35, nucleop 59.0 15 0.0005 33.8 5.7 61 521-583 23-83 (119)
231 2dhx_A Poly (ADP-ribose) polym 57.2 38 0.0013 30.7 8.0 57 519-577 5-66 (104)
232 1v66_A Protein inhibitor of ac 49.5 16 0.00056 30.9 4.0 38 13-50 11-48 (65)
233 1zbu_A ERI-1 homolog, 3'-5' ex 49.2 3.6 0.00012 42.9 0.0 44 7-50 70-113 (349)
234 2do5_A Splicing factor 3B subu 38.8 28 0.00097 28.5 3.7 36 13-48 8-43 (58)
235 1y02_A CARP2, FYVE-ring finger 31.0 37 0.0013 31.0 3.7 32 13-44 76-109 (120)
236 1kcf_A Hypothetical 30.2 KD pr 26.7 43 0.0015 34.0 3.6 32 15-46 3-34 (258)
237 1a62_A RHO; transcription term 21.0 67 0.0023 29.4 3.4 37 12-48 5-43 (130)
238 2p1w_A 27.5 kDa virulence prot 20.3 24 0.00081 36.1 0.3 21 8-28 136-156 (250)
No 1
>4a8x_B HOOK-like, isoform A; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Drosophila melanogaster}
Probab=99.58 E-value=2.3e-16 Score=120.56 Aligned_cols=38 Identities=61% Similarity=0.931 Sum_probs=26.9
Q ss_pred CCCCccchhhhhhhhcCCCceeeeeCCHHHHHHHHHHh
Q 004904 681 LDPPIVTLDDLFRKTKATPRIYYLPLSEEQVAAKLEAR 718 (724)
Q Consensus 681 ~EpP~ktLDdLFRKTka~P~IYyLPLSeeqVa~Klaa~ 718 (724)
.|+|+++||||||||+|+|+|||||||++||++|.+.|
T Consensus 3 ~e~p~k~LDdLF~KT~a~P~IY~LPltdeqv~~k~~~~ 40 (40)
T 4a8x_B 3 NEPPIRLLDDLFRKTKGTPCIYWLPLTPEAIAEKEAFR 40 (40)
T ss_dssp ------CHHHHSEECSSSSCCEEECCCHHHHHC-----
T ss_pred CcchhhhHHHHHHhccCCCceEEeECCHHHHHHHHhcC
Confidence 57999999999999999999999999999999998754
No 2
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.34 E-value=1.9e-12 Score=113.09 Aligned_cols=85 Identities=19% Similarity=0.162 Sum_probs=80.3
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecC
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVD 598 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~ 598 (724)
.+.+..|||+||-+-.|...|+++|.++|.|.+|.|..-|++|||.|.+.++|.+|..+|||..+ .+|.|+|+|++
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l----~gr~I~V~~A~ 79 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVL----ANTTIFAESPS 79 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEE----TTEEEEEECCC
T ss_pred CCccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEE----CCcEEEEEECC
Confidence 35689999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred hhhhhhhcc
Q 004904 599 PQEVKMRTE 607 (724)
Q Consensus 599 pEeV~~~Ie 607 (724)
+.++..++.
T Consensus 80 e~~~~~~~~ 88 (89)
T 2wbr_A 80 ENEVQSIMQ 88 (89)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhh
Confidence 999887653
No 3
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=8.2e-12 Score=103.62 Aligned_cols=80 Identities=18% Similarity=0.271 Sum_probs=73.8
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC--CCcEE
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG--GRPLV 593 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~--gR~Lr 593 (724)
....+++++|||+||-.-+|..+|+++|+++|.|..++|-.-|++|||+|.+.++|.+|..+|||..| . ++.|+
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~~~g~~l~ 86 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPL----GGPDRRLR 86 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBC----SSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEe----CCCCcEEE
Confidence 34457889999999999999999999999999999999987799999999999999999999999999 5 78999
Q ss_pred EeecCh
Q 004904 594 AEFVDP 599 (724)
Q Consensus 594 VDFv~p 599 (724)
|+|+.+
T Consensus 87 V~~a~~ 92 (97)
T 1why_A 87 VDFAKS 92 (97)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 999864
No 4
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=6.4e-12 Score=101.17 Aligned_cols=78 Identities=9% Similarity=0.143 Sum_probs=72.7
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHh-cCCcCCCCCCCCcEEE
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNAL-YNIQWPPNNGGRPLVA 594 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsAL-hG~vWP~en~gR~LrV 594 (724)
|+..+.+++|||+||-.-+|..+|+++|+++|.|..++|-+-|++|||+|.+.++|.+|..+| +|..| .|+.|+|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~----~g~~l~v 81 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIV----NGRRLNV 81 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEE----TTEECCE
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeE----CCCEEEE
Confidence 445678899999999999999999999999999999999888999999999999999999999 99999 7899999
Q ss_pred eec
Q 004904 595 EFV 597 (724)
Q Consensus 595 DFv 597 (724)
+|+
T Consensus 82 ~~a 84 (85)
T 2ytc_A 82 KWG 84 (85)
T ss_dssp EEC
T ss_pred Eec
Confidence 985
No 5
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=8.8e-12 Score=103.77 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=73.8
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
...+++++|||+||-.-+|..+|+++|+++|.|..++|.+-|++|||+|.+.++|.+|..+|||..+ .++.|+|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~----~g~~l~v~~ 85 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPL----RGKQLRVRF 85 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCB----TTBCCEEEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEe----CCceEEEEE
Confidence 3456789999999999999999999999999999999988899999999999999999999999999 789999999
Q ss_pred cCh
Q 004904 597 VDP 599 (724)
Q Consensus 597 v~p 599 (724)
+.+
T Consensus 86 a~~ 88 (99)
T 2cpj_A 86 ACH 88 (99)
T ss_dssp SSC
T ss_pred cCC
Confidence 864
No 6
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.1e-11 Score=103.89 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=72.8
Q ss_pred CCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 004904 515 PPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG 588 (724)
Q Consensus 515 pPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~ 588 (724)
.|.....+++|||+||-.-+|..+|+++|+++|.|..++| ++-|++|||+|.+.++|.+|..+|||..| .
T Consensus 16 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 91 (106)
T 1p27_B 16 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL----M 91 (106)
T ss_dssp CBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS----S
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE----C
Confidence 4455678899999999999999999999999999998877 34489999999999999999999999999 7
Q ss_pred CCcEEEeecCh
Q 004904 589 GRPLVAEFVDP 599 (724)
Q Consensus 589 gR~LrVDFv~p 599 (724)
|+.|+|.|+.+
T Consensus 92 g~~l~V~~a~~ 102 (106)
T 1p27_B 92 GQPISVDWCFV 102 (106)
T ss_dssp SSBCEEEESEE
T ss_pred CcEEEEEeecC
Confidence 89999999753
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=1.8e-11 Score=100.46 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=69.8
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
.+++++|||+||-.-+|..+|+++|+++|.|..++| .+.|++|||+|.+.++|.+|..+|||..| .++.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l 77 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL----AGRPM 77 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS----SSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee----CCcEE
Confidence 467899999999999999999999999999998777 33578999999999999999999999999 78999
Q ss_pred EEeecC
Q 004904 593 VAEFVD 598 (724)
Q Consensus 593 rVDFv~ 598 (724)
+|.|+.
T Consensus 78 ~V~~a~ 83 (95)
T 2dnz_A 78 RVGHVT 83 (95)
T ss_dssp EEEESS
T ss_pred EEEEcc
Confidence 999975
No 8
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.28 E-value=1.7e-11 Score=101.99 Aligned_cols=81 Identities=15% Similarity=0.286 Sum_probs=72.6
Q ss_pred CCCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeE--------EEe--c----CccceEEEEecCHHHHHHHHHHhc
Q 004904 514 VPPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTS--------FWM--D----HIKTHCYVTYSSVEEAIETRNALY 579 (724)
Q Consensus 514 VpPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~--------FWL--D----~IKSHCYVtFsSVEeA~aARsALh 579 (724)
.+++..+++++|||+||-.-.|..+|+++|+++|.|.. ++| | +-|++|||+|.+.++|.+|..+||
T Consensus 5 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 5 HHHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CSCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 35667789999999999999999999999999999987 666 3 447899999999999999999999
Q ss_pred CCcCCCCCCCCcEEEeecC
Q 004904 580 NIQWPPNNGGRPLVAEFVD 598 (724)
Q Consensus 580 G~vWP~en~gR~LrVDFv~ 598 (724)
|..| .|+.|+|.|+.
T Consensus 85 g~~~----~g~~l~V~~A~ 99 (99)
T 2la6_A 85 GKEF----SGNPIKVSFAT 99 (99)
T ss_dssp TCBS----SSSBCEEEECC
T ss_pred CCEe----CCcEEEEEecC
Confidence 9999 78999999863
No 9
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=1.6e-11 Score=102.78 Aligned_cols=80 Identities=21% Similarity=0.321 Sum_probs=72.6
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCc-------cceEEEEecCHHHHHHHHHHh-cCCcCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHI-------KTHCYVTYSSVEEAIETRNAL-YNIQWPPNN 587 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~I-------KSHCYVtFsSVEeA~aARsAL-hG~vWP~en 587 (724)
+...+++++|||+||-.-+|..+|+++|+++|.|..++|-.- |++|||+|.+.++|.+|..+| ||..|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---- 84 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL---- 84 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS----
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE----
Confidence 445678899999999999999999999999999999888433 899999999999999999999 99999
Q ss_pred CCCcEEEeecCh
Q 004904 588 GGRPLVAEFVDP 599 (724)
Q Consensus 588 ~gR~LrVDFv~p 599 (724)
.++.|+|.|+.+
T Consensus 85 ~g~~l~v~~a~~ 96 (107)
T 2cph_A 85 YGRRLVLEWADS 96 (107)
T ss_dssp SSCBCEEEECCC
T ss_pred CCCEEEEEeCCC
Confidence 789999999864
No 10
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=1.1e-11 Score=103.64 Aligned_cols=81 Identities=12% Similarity=0.247 Sum_probs=73.3
Q ss_pred CCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 004904 515 PPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG 588 (724)
Q Consensus 515 pPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~ 588 (724)
+++...++++|||+||-.-+|..+|+++|+++|.|..++| .+-|++|||+|.+.++|.+|..+|||..| .
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~ 81 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL----D 81 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB----T
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE----C
Confidence 4455678899999999999999999999999999998888 44689999999999999999999999999 7
Q ss_pred CCcEEEeecCh
Q 004904 589 GRPLVAEFVDP 599 (724)
Q Consensus 589 gR~LrVDFv~p 599 (724)
++.|+|.|+.+
T Consensus 82 g~~l~V~~a~~ 92 (103)
T 2dnm_A 82 GRELRVQVARY 92 (103)
T ss_dssp TBCCEEEECSS
T ss_pred CcEEEEEECCc
Confidence 89999999863
No 11
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.28 E-value=2e-11 Score=103.91 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=73.7
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe---cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEe
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM---DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAE 595 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL---D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVD 595 (724)
.+++++|||+||-.-+|..+|+++|+.+|.|..++| ..-|++|||+|.+.++|.+|..+|||..| .|+.|+|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNV----SNRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBS----SSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEE
Confidence 457899999999999999999999999999998888 44589999999999999999999999999 78999999
Q ss_pred ecChhhhh
Q 004904 596 FVDPQEVK 603 (724)
Q Consensus 596 Fv~pEeV~ 603 (724)
|+.+..-.
T Consensus 81 ~a~~~~~~ 88 (115)
T 3lqv_A 81 YYNANRAF 88 (115)
T ss_dssp ECCHHHHT
T ss_pred EecCChhh
Confidence 99876543
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=101.03 Aligned_cols=79 Identities=14% Similarity=0.191 Sum_probs=71.5
Q ss_pred CCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 004904 515 PPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG 588 (724)
Q Consensus 515 pPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~ 588 (724)
+....++.++|||+||-.-+|..+|+++|+++|.|..++| .+.|++|||+|.+.++|.+|..+|||..| .
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~ 84 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL----F 84 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE----T
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee----C
Confidence 3445578899999999999999999999999999998888 34578999999999999999999999999 7
Q ss_pred CCcEEEeec
Q 004904 589 GRPLVAEFV 597 (724)
Q Consensus 589 gR~LrVDFv 597 (724)
++.|+|.|+
T Consensus 85 g~~l~v~~a 93 (94)
T 2e5h_A 85 GRVIKASIA 93 (94)
T ss_dssp TEEEEEEEC
T ss_pred CcEEEEEec
Confidence 899999986
No 13
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2.4e-11 Score=102.75 Aligned_cols=82 Identities=10% Similarity=0.194 Sum_probs=72.8
Q ss_pred CCCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecC---ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 514 VPPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDH---IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 514 VpPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~---IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
..+...+++++|||+||-.-+|..+|+++|+++|.|..++|-. -|++|||+|.+.++|.+|..+|||..| .++
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~ 89 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDY----DGY 89 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEE----CCe
Confidence 3445566889999999999999999999999999999888833 367999999999999999999999999 789
Q ss_pred cEEEeecCh
Q 004904 591 PLVAEFVDP 599 (724)
Q Consensus 591 ~LrVDFv~p 599 (724)
.|+|+|+.+
T Consensus 90 ~l~V~~a~~ 98 (109)
T 1x4a_A 90 RLRVEFPRS 98 (109)
T ss_dssp ECEEECCCC
T ss_pred EEEEEEccc
Confidence 999999753
No 14
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.27 E-value=2e-11 Score=102.13 Aligned_cols=81 Identities=22% Similarity=0.222 Sum_probs=70.6
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecC-----ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDH-----IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~-----IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
..+++++|||+||-.-+|..+|+++|+++|.|..++|-. -|++|||+|.+.++|.+|..+|||..|-.. .++.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg-~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG-ASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT-CSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC-CCccE
Confidence 456789999999999999999999999999999888733 378999999999999999999999999322 12899
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|.|+.+
T Consensus 90 ~V~~a~~ 96 (105)
T 2dnh_A 90 VVKFADT 96 (105)
T ss_dssp EEEESCS
T ss_pred EEEECcc
Confidence 9999874
No 15
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.8e-11 Score=102.30 Aligned_cols=82 Identities=16% Similarity=0.195 Sum_probs=73.5
Q ss_pred CCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 004904 515 PPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG 588 (724)
Q Consensus 515 pPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~ 588 (724)
+++..+++++|||+||-.-+|..+|+++|+++|.|..++| ...|++|||+|.+.++|.+|..+|||..| .
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 83 (105)
T 1x5u_A 8 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL----Y 83 (105)
T ss_dssp CCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC----S
T ss_pred CcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE----C
Confidence 4455678899999999999999999999999999998887 23578999999999999999999999999 7
Q ss_pred CCcEEEeecChh
Q 004904 589 GRPLVAEFVDPQ 600 (724)
Q Consensus 589 gR~LrVDFv~pE 600 (724)
++.|+|.|+.+.
T Consensus 84 g~~l~v~~a~~~ 95 (105)
T 1x5u_A 84 GKPIRVNKASAH 95 (105)
T ss_dssp SCBCEEEETTTT
T ss_pred CeEEEEEECCCC
Confidence 899999998754
No 16
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.27 E-value=1.5e-11 Score=98.81 Aligned_cols=76 Identities=11% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
..+++++|||+||-.-.|..+|+++|+++|.|..++| .+-|++|||+|.+.++|.+|..+|||..| .|+.
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~ 78 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL----FGRT 78 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE----TTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE----CCcE
Confidence 3568899999999999999999999999999999888 34689999999999999999999999999 7899
Q ss_pred EEEeec
Q 004904 592 LVAEFV 597 (724)
Q Consensus 592 LrVDFv 597 (724)
|+|.|+
T Consensus 79 l~v~~a 84 (85)
T 3mdf_A 79 IRVNLA 84 (85)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 999986
No 17
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.6e-11 Score=102.15 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=70.2
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecC
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVD 598 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~ 598 (724)
.+++++|||+|| .+|..+|+++|.++|.|..++|.+.|++|||+|.+.++|.+|..+|||..| .++.|+|.|+.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~g~~l~v~~a~ 85 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV----ESVQLKVNIAR 85 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEE----TTEEEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeE----CCeEEEEEECC
Confidence 457789999996 899999999999999999999999999999999999999999999999999 78999999975
Q ss_pred h
Q 004904 599 P 599 (724)
Q Consensus 599 p 599 (724)
+
T Consensus 86 ~ 86 (97)
T 1x5p_A 86 K 86 (97)
T ss_dssp S
T ss_pred C
Confidence 4
No 18
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=2e-11 Score=100.01 Aligned_cols=75 Identities=17% Similarity=0.123 Sum_probs=70.4
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeec
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFV 597 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv 597 (724)
..++.++|||+||-.-+|..+|+++|+++|.|..++|- |++|||+|.+.++|.+|..+|||..| .++.|+|.|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~v~~a 77 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKL----HGVNINVEAS 77 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBC----SSCBCEEECS
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCcc----CCcEEEEEEC
Confidence 45678999999999999999999999999999998886 89999999999999999999999999 7899999997
Q ss_pred C
Q 004904 598 D 598 (724)
Q Consensus 598 ~ 598 (724)
.
T Consensus 78 ~ 78 (90)
T 2dnq_A 78 K 78 (90)
T ss_dssp S
T ss_pred C
Confidence 5
No 19
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.26 E-value=1.3e-11 Score=105.00 Aligned_cols=77 Identities=16% Similarity=0.268 Sum_probs=69.7
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
+...+.|||+||-.-+|..+|+++|+++|.|.++.| ++-|++|||+|.+.++|.+|..+|||..| .||.|
T Consensus 16 ~~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~----~gr~l 91 (99)
T 4fxv_A 16 YFQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL----QSKTI 91 (99)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEEC
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE----CCEEE
Confidence 445678999999999999999999999999998777 34578999999999999999999999999 88999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|+|+-|
T Consensus 92 ~V~~AkP 98 (99)
T 4fxv_A 92 KVSYARP 98 (99)
T ss_dssp EEEECCB
T ss_pred EEEEeeC
Confidence 9999864
No 20
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.4e-11 Score=100.80 Aligned_cols=78 Identities=17% Similarity=0.261 Sum_probs=71.3
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
...+++++|||+||-.-+|..+|+++|+++|.|..++| ++.|++|||+|.+.++|.+|..+|||..+ .++
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL----DGR 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE----TTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE----CCE
Confidence 34567899999999999999999999999999998887 45688999999999999999999999999 789
Q ss_pred cEEEeecC
Q 004904 591 PLVAEFVD 598 (724)
Q Consensus 591 ~LrVDFv~ 598 (724)
.|+|.|+.
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99999975
No 21
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.25 E-value=1.5e-11 Score=100.33 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=72.5
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecC----ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDH----IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~----IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
|+..++.++|||+||-.-.|..+|+++|+++|.|..++|-. -|++|||+|.+.++|.+|..+|||..| .++.
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~----~g~~ 77 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKL----SGRE 77 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCB----TTBC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEE----CCcE
Confidence 45567889999999999999999999999999999888743 679999999999999999999999999 7899
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|.|+.+
T Consensus 78 l~v~~a~~ 85 (92)
T 2dgv_A 78 IDVRIDRN 85 (92)
T ss_dssp CCCEECSC
T ss_pred EEEEEcCC
Confidence 99998753
No 22
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=3.9e-11 Score=99.61 Aligned_cols=79 Identities=15% Similarity=0.194 Sum_probs=71.3
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
++..+++++|||+||-.-+|..+|+++|+++|.|..++| .+-|++|||+|.+.++|.+|.. |||..| .+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~----~g 78 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI----MG 78 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS----SS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE----CC
Confidence 445578899999999999999999999999999998888 3468999999999999999998 999999 78
Q ss_pred CcEEEeecCh
Q 004904 590 RPLVAEFVDP 599 (724)
Q Consensus 590 R~LrVDFv~p 599 (724)
+.|+|.|+.+
T Consensus 79 ~~l~V~~a~~ 88 (99)
T 2dgs_A 79 KKVEVKRAEP 88 (99)
T ss_dssp CBCEEEECCC
T ss_pred eEEEEEECCC
Confidence 9999999763
No 23
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.25 E-value=1.4e-11 Score=101.50 Aligned_cols=79 Identities=9% Similarity=0.346 Sum_probs=71.8
Q ss_pred CCCCCceEeecccCCCCCHHHHH----HHhcCcCCeeEEEec---CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQ----ELLGKTGTFTSFWMD---HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLk----ElLsetGtI~~FWLD---~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
..+++++|||+||-.-+|..+|+ ++|+++|.|..++|- +.|++|||+|.+.++|.+|..+|||..| .|+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~ 79 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF----YDK 79 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEE----TTE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEE----CCc
Confidence 45788999999999999999999 999999999999885 5689999999999999999999999999 789
Q ss_pred cEEEeecChh
Q 004904 591 PLVAEFVDPQ 600 (724)
Q Consensus 591 ~LrVDFv~pE 600 (724)
.|+|.|+.+.
T Consensus 80 ~l~v~~a~~~ 89 (97)
T 1nu4_A 80 PMRIQYAKTD 89 (97)
T ss_dssp ECEEEECSSC
T ss_pred EEEEEEccCC
Confidence 9999998754
No 24
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.24 E-value=1.5e-11 Score=108.12 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=74.8
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCc--CCCCCCCCcEE
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQ--WPPNNGGRPLV 593 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~v--WP~en~gR~Lr 593 (724)
....+|+++|||+||-...|..+|+++|+++|.|.+++|-+-|++|||.|.+.++|.+|..+|+|.. + .||.|+
T Consensus 15 ~~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i----~Gr~i~ 90 (100)
T 3r27_A 15 PHKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYI----AGHPAF 90 (100)
T ss_dssp --CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEE----TTEEEE
T ss_pred cccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCcee----CCcEEE
Confidence 3455789999999999999999999999999999999998889999999999999999999999874 6 789999
Q ss_pred EeecChhhh
Q 004904 594 AEFVDPQEV 602 (724)
Q Consensus 594 VDFv~pEeV 602 (724)
|.|+...++
T Consensus 91 V~~S~~k~l 99 (100)
T 3r27_A 91 VNYSTSQKI 99 (100)
T ss_dssp EEECSCSCC
T ss_pred EEecccccc
Confidence 999976554
No 25
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=2.3e-11 Score=105.57 Aligned_cols=81 Identities=15% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCc--CCCCCCCCcEEE
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQ--WPPNNGGRPLVA 594 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~v--WP~en~gR~LrV 594 (724)
...+++++|||+||-.-.|..+|+++|++||.|..++|-+-|++|||.|.+.++|.+|..+|+|.. + .|+.|+|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i----~Gr~l~V 85 (104)
T 1wex_A 10 HKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYI----AGQQAFF 85 (104)
T ss_dssp CCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBS----SSSBCEE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceE----CCEEEEE
Confidence 345688999999999999999999999999999999998889999999999999999999998753 5 6899999
Q ss_pred eecChhh
Q 004904 595 EFVDPQE 601 (724)
Q Consensus 595 DFv~pEe 601 (724)
+|+...+
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9987543
No 26
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.24 E-value=1.2e-11 Score=102.95 Aligned_cols=76 Identities=21% Similarity=0.228 Sum_probs=71.4
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecCh
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVDP 599 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~p 599 (724)
+..++|||+||-.-+|..+|+++|+++|.|..++|-+-|++|||+|.+.++|.+|..+|||..| .|+.|+|+|+.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPF----QGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEE----TTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeE----CCeEEEEEeccC
Confidence 4568999999999999999999999999999999999999999999999999999999999999 789999998753
No 27
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=2.5e-11 Score=99.85 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=71.3
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEe
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAE 595 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVD 595 (724)
++..+++++|||+||-.-+|..+|+++|+++|.|..++|- |.+|||+|.+.++|.+|..+|||..| .++.|+|.
T Consensus 4 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~V~ 77 (92)
T 2dgt_A 4 GSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEF----QGKRMHVQ 77 (92)
T ss_dssp SCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEE----TTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCee----CCcEEEEE
Confidence 4456788999999999999999999999999999998885 77999999999999999999999999 78999999
Q ss_pred ecC
Q 004904 596 FVD 598 (724)
Q Consensus 596 Fv~ 598 (724)
|+.
T Consensus 78 ~a~ 80 (92)
T 2dgt_A 78 LST 80 (92)
T ss_dssp ESS
T ss_pred Ecc
Confidence 985
No 28
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.9e-11 Score=99.78 Aligned_cols=80 Identities=15% Similarity=0.155 Sum_probs=72.1
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
+...++.++|||+||-.-+|..+|+++|+++|.|..++| ++-|++|||+|.+.++|.+|..+|||..+ .++
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~ 86 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI----KEN 86 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES----SSC
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE----CCE
Confidence 444567899999999999999999999999999998888 34569999999999999999999999999 789
Q ss_pred cEEEeecCh
Q 004904 591 PLVAEFVDP 599 (724)
Q Consensus 591 ~LrVDFv~p 599 (724)
.|+|.|+.+
T Consensus 87 ~l~v~~a~~ 95 (100)
T 2do4_A 87 IIKVAISNS 95 (100)
T ss_dssp EEEEEECCC
T ss_pred EEEEEECCC
Confidence 999999864
No 29
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.23 E-value=2.6e-11 Score=102.07 Aligned_cols=78 Identities=9% Similarity=0.124 Sum_probs=70.5
Q ss_pred CCCCCCCceEeecccCC-CCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 516 PSPKSPTNSLRIDHFVR-PFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvR-PFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
....|++++|||+||-. -+|..+|+++|+++|.|..+.| .|++|||+|.+.++|.+|..+|||..+ .|+.|+|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V 89 (97)
T 2xnq_A 16 PRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMN----FGKKLIL 89 (97)
T ss_dssp ---CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEE----TTEECEE
T ss_pred cCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEE----CCEEEEE
Confidence 33457899999999998 9999999999999999999998 499999999999999999999999999 7899999
Q ss_pred eecCh
Q 004904 595 EFVDP 599 (724)
Q Consensus 595 DFv~p 599 (724)
+|+..
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 99753
No 30
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.23 E-value=2.9e-11 Score=101.22 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=73.3
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
+...+.+++|||+||-.-+|..+|+++|+++|.|..++| .+-|++|||+|.+.++|.+|..+|||..+... .+
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~-~g 85 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG-MN 85 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT-CS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC-CC
Confidence 334567899999999999999999999999999999888 33689999999999999999999999887665 47
Q ss_pred CcEEEeecCh
Q 004904 590 RPLVAEFVDP 599 (724)
Q Consensus 590 R~LrVDFv~p 599 (724)
+.|+|.|+.+
T Consensus 86 ~~l~v~~a~~ 95 (106)
T 2dgp_A 86 RPIQVKPADS 95 (106)
T ss_dssp SCCEEEECCC
T ss_pred ceEEEEECCc
Confidence 8899999864
No 31
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.23 E-value=2.3e-11 Score=101.30 Aligned_cols=76 Identities=9% Similarity=0.137 Sum_probs=68.6
Q ss_pred CCCCCCceEeecccCC-CCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEe
Q 004904 517 SPKSPTNSLRIDHFVR-PFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAE 595 (724)
Q Consensus 517 s~hPpT~aLyI~NLvR-PFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVD 595 (724)
+..+++++|||+||-. -+|..+|+++|+++|.|..++| .|++|||+|.+.++|.+|..+|||..+ .++.|+|+
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~V~ 78 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--KNAFGFIQFDNPQSVRDAIECESQEMN----FGKKLILE 78 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSC----BTTTBCEE
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCee----CCcEEEEE
Confidence 3457899999999998 9999999999999999999999 499999999999999999999999999 78999999
Q ss_pred ecC
Q 004904 596 FVD 598 (724)
Q Consensus 596 Fv~ 598 (724)
|+.
T Consensus 79 ~a~ 81 (96)
T 2kvi_A 79 VSS 81 (96)
T ss_dssp EEE
T ss_pred EcC
Confidence 975
No 32
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=5.5e-11 Score=100.74 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=70.4
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec-----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD-----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD-----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
..+++++|||+||-.-+|..+|+++|.++|.|..++|- +-|++|||+|.+.++|.+|..+|||..+ .++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL----FDRPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe----CCCEE
Confidence 45678999999999999999999999999999987773 3478999999999999999999999999 78999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|.|+..
T Consensus 87 ~v~~a~~ 93 (114)
T 2do0_A 87 HVKMDER 93 (114)
T ss_dssp EEEECSC
T ss_pred EEEEccc
Confidence 9999753
No 33
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.2e-11 Score=101.30 Aligned_cols=78 Identities=12% Similarity=0.230 Sum_probs=71.5
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
..++.++|||+||-.-+|..+|+++|+++|.|..++| .+-|++|||+|.+.++|.+|..+|||..| .++.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~ 83 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL----FGRT 83 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE----TTEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE----CCcE
Confidence 3467899999999999999999999999999998888 34689999999999999999999999999 7899
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|.|+.+
T Consensus 84 l~V~~a~~ 91 (102)
T 2cqb_A 84 IRVNLAKP 91 (102)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99999764
No 34
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=4.4e-11 Score=99.96 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=70.9
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
...+++|||+||-.-+|..+|+++|+++|.|..++|- +-|++|||+|.+.++|.+|..+|||..| .++.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~V 87 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIV----ATKPLYV 87 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBS----SSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEe----CCcEEEE
Confidence 4578899999999999999999999999999987774 6689999999999999999999999999 7899999
Q ss_pred eecCh
Q 004904 595 EFVDP 599 (724)
Q Consensus 595 DFv~p 599 (724)
.|+.+
T Consensus 88 ~~a~~ 92 (103)
T 2d9p_A 88 ALAQR 92 (103)
T ss_dssp EECSS
T ss_pred EEecc
Confidence 99864
No 35
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.22 E-value=3.1e-11 Score=99.98 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=70.8
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
|+++|||+||-.-+|..+|+++|+++|.|..+.| ++-|++|||+|.+.++|.+|..+|||..+ .|+.|+|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL----GSRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE----TTEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE----CCeEEEE
Confidence 5789999999999999999999999999998888 34489999999999999999999999999 8899999
Q ss_pred eecChhh
Q 004904 595 EFVDPQE 601 (724)
Q Consensus 595 DFv~pEe 601 (724)
.|+.+..
T Consensus 77 ~~a~~~~ 83 (96)
T 2x1f_A 77 GYSSNSD 83 (96)
T ss_dssp EECSCSS
T ss_pred EEcCCCC
Confidence 9987643
No 36
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.22 E-value=2.9e-11 Score=97.46 Aligned_cols=77 Identities=13% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
.++.++|||+||-.-.|..+|+++|+++|.|..++| + +-|++|||+|.+.++|.+|..+|||..| .|+.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l 78 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL----GGRQI 78 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEEC
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE----CCeEE
Confidence 457889999999999999999999999999998777 2 3478999999999999999999999999 88999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|.|+.+
T Consensus 79 ~v~~a~~ 85 (87)
T 3bs9_A 79 RTNWATR 85 (87)
T ss_dssp EEEEEC-
T ss_pred EEEecCC
Confidence 9999864
No 37
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=5e-11 Score=99.63 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=72.0
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
+...+.+++|||+||-.-+|..+|+++|+++|.|..++|- ..|++|||+|.+.++|.+|..+|||..| .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~ 84 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV----EGRK 84 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEE----TTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEE----CCEE
Confidence 3445678999999999999999999999999999988873 3488999999999999999999999999 8899
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|.|+.+
T Consensus 85 l~v~~a~~ 92 (103)
T 2cq3_A 85 IEVNNATA 92 (103)
T ss_dssp CEEEECCS
T ss_pred EEEEEccc
Confidence 99999764
No 38
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.21 E-value=4.5e-11 Score=103.16 Aligned_cols=80 Identities=15% Similarity=0.211 Sum_probs=72.5
Q ss_pred CCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 004904 515 PPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG 588 (724)
Q Consensus 515 pPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~ 588 (724)
.|...+++++|||+||-.-+|..+|+++|+++|.|..++|- ..|++|||+|.+.++|.+|..+|||..| .
T Consensus 15 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~ 90 (126)
T 3ex7_B 15 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL----M 90 (126)
T ss_dssp CBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS----S
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee----C
Confidence 35566788999999999999999999999999999988872 3389999999999999999999999999 7
Q ss_pred CCcEEEeecC
Q 004904 589 GRPLVAEFVD 598 (724)
Q Consensus 589 gR~LrVDFv~ 598 (724)
++.|+|.|+.
T Consensus 91 g~~l~v~~a~ 100 (126)
T 3ex7_B 91 GQPISVDWCF 100 (126)
T ss_dssp SSBCEEEESE
T ss_pred CeEEEEEEec
Confidence 8999999975
No 39
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.21 E-value=3.3e-11 Score=101.07 Aligned_cols=80 Identities=15% Similarity=0.208 Sum_probs=71.4
Q ss_pred CCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec-----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 515 PPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD-----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 515 pPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD-----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
.++..+++++|||+||-.-+|..+|+++|+.+|.|..+.|- +-|++|||+|.+.++|.+|..+|||..| .+
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g 97 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL----DG 97 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe----CC
Confidence 44556789999999999999999999999999999877663 5588999999999999999999999999 78
Q ss_pred CcEEEeecC
Q 004904 590 RPLVAEFVD 598 (724)
Q Consensus 590 R~LrVDFv~ 598 (724)
+.|+|.|++
T Consensus 98 ~~l~V~~a~ 106 (107)
T 3ulh_A 98 RPMNIQLVT 106 (107)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEeC
Confidence 999999975
No 40
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=3e-11 Score=98.96 Aligned_cols=77 Identities=13% Similarity=0.149 Sum_probs=71.0
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
...+++++|||+||-.-+|..+|+++|+++|.|..++|- |.+|||+|.+.++|.+|..+|||..| .++.|+|.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~ 77 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEV----KGKRINVEL 77 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEE----TTEECEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEE----CCcEEEEEE
Confidence 345678999999999999999999999999999998885 77999999999999999999999999 789999999
Q ss_pred cCh
Q 004904 597 VDP 599 (724)
Q Consensus 597 v~p 599 (724)
+.+
T Consensus 78 a~~ 80 (90)
T 2dnp_A 78 STK 80 (90)
T ss_dssp SCC
T ss_pred CCC
Confidence 763
No 41
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.21 E-value=2.7e-11 Score=96.85 Aligned_cols=74 Identities=14% Similarity=0.205 Sum_probs=67.9
Q ss_pred CceEeecccCCCCCHHHHHHHhcCcCCeeEEEec------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEe
Q 004904 522 TNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAE 595 (724)
Q Consensus 522 T~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVD 595 (724)
|.+|||+||-.-.|..+|+++|+++|.|..++|- +-|++|||+|.+.++|.+|..+|||..| .|+.|+|.
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~----~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL----NGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE----TTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee----CCcEEEEE
Confidence 5789999999999999999999999999987772 3389999999999999999999999999 78999999
Q ss_pred ecCh
Q 004904 596 FVDP 599 (724)
Q Consensus 596 Fv~p 599 (724)
|+.+
T Consensus 77 ~a~~ 80 (83)
T 3md1_A 77 WAAK 80 (83)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 9865
No 42
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=5.5e-11 Score=98.45 Aligned_cols=78 Identities=15% Similarity=0.176 Sum_probs=71.1
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
...++++|||+||-.-+|..+|+++|+++|.|..++| ++.|++|||+|.+.++|.+|..+|||..| .++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~ 79 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF----QGRM 79 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES----SSCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE----CCcE
Confidence 3457899999999999999999999999999998888 33579999999999999999999999999 7899
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|.|+.+
T Consensus 80 l~V~~a~~ 87 (99)
T 1whw_A 80 LHVLPSTI 87 (99)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 99999864
No 43
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.21 E-value=3.8e-11 Score=101.42 Aligned_cols=82 Identities=15% Similarity=0.175 Sum_probs=73.6
Q ss_pred CCCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 004904 514 VPPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNN 587 (724)
Q Consensus 514 VpPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en 587 (724)
..|+..+++++|||+||-.-+|..+|+++|+++|.|..++| ++.|++|||+|.+.++|.+|..+|||..|
T Consensus 18 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~---- 93 (110)
T 1oo0_B 18 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI---- 93 (110)
T ss_dssp CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE----
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE----
Confidence 34556678899999999999999999999999999999888 23479999999999999999999999999
Q ss_pred CCCcEEEeecCh
Q 004904 588 GGRPLVAEFVDP 599 (724)
Q Consensus 588 ~gR~LrVDFv~p 599 (724)
.|+.|+|.|+.+
T Consensus 94 ~g~~l~V~~a~~ 105 (110)
T 1oo0_B 94 MGQTIQVDWCFV 105 (110)
T ss_dssp TTEECEEEESEE
T ss_pred CCcEEEEEEccc
Confidence 789999999754
No 44
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.20 E-value=3.9e-11 Score=96.60 Aligned_cols=76 Identities=20% Similarity=0.250 Sum_probs=69.6
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--cC-----ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--DH-----IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D~-----IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
..+++|||+||-.-+|..+|+++|+++|.|..++| +. -|++|||+|.+.++|.+|..+|||..| .|+.|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l 77 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI----DGQEI 77 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE----TTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE----CCeEE
Confidence 45689999999999999999999999999998887 22 789999999999999999999999999 89999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|.|+.+
T Consensus 78 ~v~~a~~ 84 (88)
T 4a8x_A 78 TATAVLA 84 (88)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9999854
No 45
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=4.5e-11 Score=100.34 Aligned_cols=78 Identities=14% Similarity=0.316 Sum_probs=70.4
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG 588 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~ 588 (724)
+.+.++.++|||+||-.-+|..+|+++|+++| |..++| .+-|++|||+|.+.++|.+|. +|||..| .
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~----~ 82 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL----G 82 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE----T
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe----C
Confidence 44456789999999999999999999999999 999888 345889999999999999999 9999999 8
Q ss_pred CCcEEEeecCh
Q 004904 589 GRPLVAEFVDP 599 (724)
Q Consensus 589 gR~LrVDFv~p 599 (724)
++.|+|.|+.+
T Consensus 83 g~~l~V~~a~~ 93 (104)
T 1wi8_A 83 NKRIRVDVADQ 93 (104)
T ss_dssp TEECEEEECCC
T ss_pred CcEEEEEEccC
Confidence 89999999864
No 46
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=3.2e-11 Score=100.80 Aligned_cols=78 Identities=15% Similarity=0.330 Sum_probs=70.6
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
..+++++|||+||-.-+|..+|+++|+++|.|..++| + +-|++|||+|.+.++|.+|..+|||..| .++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY----DHLI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE----TTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee----CCcE
Confidence 4567899999999999999999999999999998777 2 3467999999999999999999999999 7899
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|.|+.+
T Consensus 87 l~v~~a~~ 94 (103)
T 2cq0_A 87 LNVEWAKP 94 (103)
T ss_dssp CEEEESSC
T ss_pred EEEEECCC
Confidence 99999763
No 47
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=2.9e-11 Score=99.95 Aligned_cols=77 Identities=18% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec---------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD---------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD---------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
.+++++|||+||-.-+|..+|+++|+++|.|..++|- +-|++|||+|.+.++|.+|..+|||..| .+
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g 77 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV----DG 77 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE----TT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee----CC
Confidence 3578999999999999999999999999999987773 4578999999999999999999999999 78
Q ss_pred CcEEEeecCh
Q 004904 590 RPLVAEFVDP 599 (724)
Q Consensus 590 R~LrVDFv~p 599 (724)
+.|+|.|+.+
T Consensus 78 ~~l~V~~a~~ 87 (98)
T 2cpf_A 78 HKLEVRISER 87 (98)
T ss_dssp EECEEECSSC
T ss_pred eEEEEEEccC
Confidence 9999999753
No 48
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=7.2e-11 Score=99.32 Aligned_cols=80 Identities=19% Similarity=0.233 Sum_probs=72.1
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec------CccceEEEEecCHHHHHHHHHHhc------CCcC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD------HIKTHCYVTYSSVEEAIETRNALY------NIQW 583 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD------~IKSHCYVtFsSVEeA~aARsALh------G~vW 583 (724)
+....++++|||+||-.-+|..+|+++|+++|.|..++|- .-|++|||+|.+.++|.+|..+|| |..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3345678999999999999999999999999999988883 568999999999999999999999 9999
Q ss_pred CCCCCCCcEEEeecCh
Q 004904 584 PPNNGGRPLVAEFVDP 599 (724)
Q Consensus 584 P~en~gR~LrVDFv~p 599 (724)
.++.|+|.|+.+
T Consensus 89 ----~g~~l~v~~a~~ 100 (111)
T 1x4h_A 89 ----DGRQLKVDLAVT 100 (111)
T ss_dssp ----SSCEEEEECCCC
T ss_pred ----cCEEEEEEECCC
Confidence 789999999864
No 49
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.20 E-value=3.8e-11 Score=100.85 Aligned_cols=78 Identities=12% Similarity=0.222 Sum_probs=71.1
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEe
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAE 595 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVD 595 (724)
++...++++|||+||-.-+|..+|+++|+++|.|..++|- |.+|||+|.+.++|.+|..+|||..| .++.|+|.
T Consensus 5 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~ 78 (103)
T 2dgu_A 5 SSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDL----EGENIEIV 78 (103)
T ss_dssp CCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEE----TTEEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCcc----CCCEEEEE
Confidence 3445678999999999999999999999999999998874 88999999999999999999999999 78999999
Q ss_pred ecCh
Q 004904 596 FVDP 599 (724)
Q Consensus 596 Fv~p 599 (724)
|+.+
T Consensus 79 ~a~~ 82 (103)
T 2dgu_A 79 FAKP 82 (103)
T ss_dssp ECCC
T ss_pred EcCC
Confidence 9853
No 50
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.20 E-value=4.3e-11 Score=103.99 Aligned_cols=80 Identities=14% Similarity=0.083 Sum_probs=73.3
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEE
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLV 593 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~Lr 593 (724)
|+.++|||+||-.-+|..+|+++|+++|.|..++| .+-|++|||+|.+.++|.+|...|||..+ .|+.|+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~----~gr~i~ 79 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV----MGNIIH 79 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE----CCeEEE
Confidence 67889999999999999999999999999998887 45589999999999999999999999999 899999
Q ss_pred EeecChhhhh
Q 004904 594 AEFVDPQEVK 603 (724)
Q Consensus 594 VDFv~pEeV~ 603 (724)
|+|+...+-.
T Consensus 80 V~~a~~~~~~ 89 (110)
T 3s8s_A 80 AQLDIKGQQR 89 (110)
T ss_dssp EEECSTTHHH
T ss_pred EEECCCCcHH
Confidence 9999876543
No 51
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.20 E-value=7.8e-11 Score=102.40 Aligned_cols=82 Identities=20% Similarity=0.229 Sum_probs=73.7
Q ss_pred CCCceEeecccCCCC-----CHHHHHHHhcCcCCeeEEEec-------CccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 004904 520 SPTNSLRIDHFVRPF-----TLRAVQELLGKTGTFTSFWMD-------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNN 587 (724)
Q Consensus 520 PpT~aLyI~NLvRPF-----T~~qLkElLsetGtI~~FWLD-------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en 587 (724)
.+|++|+|.|++-|. +..+|+++|+++|.|.++||- +-|++|||+|.+.++|.+|..+|||..+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~---- 81 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF---- 81 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE----
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE----
Confidence 579999999999773 679999999999999999883 3489999999999999999999999999
Q ss_pred CCCcEEEeecChhhhhhh
Q 004904 588 GGRPLVAEFVDPQEVKMR 605 (724)
Q Consensus 588 ~gR~LrVDFv~pEeV~~~ 605 (724)
.||.|+|.|++++.+...
T Consensus 82 ~Gr~i~v~~a~~~~f~~~ 99 (105)
T 2pe8_A 82 GGRVVKACFYNLDKFRVL 99 (105)
T ss_dssp TTEECEEEECCHHHHHTT
T ss_pred CCcEEEEEEcCHHHhhhh
Confidence 899999999999877543
No 52
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1e-10 Score=97.28 Aligned_cols=78 Identities=10% Similarity=0.205 Sum_probs=71.0
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCee-EEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFT-SFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~-~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
..+.+++|||+||-.-+|..+|+++|+++|.|. .+..++-|++|||+|.+.++|.+|..+|||..| .|+.|+|+|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~V~~ 90 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRL----GTDTLRVAL 90 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCS----SSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEEEEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEE----CCcEEEEEE
Confidence 345688999999999999999999999999984 555688899999999999999999999999999 789999999
Q ss_pred cCh
Q 004904 597 VDP 599 (724)
Q Consensus 597 v~p 599 (724)
+.+
T Consensus 91 a~~ 93 (97)
T 2e5j_A 91 ARQ 93 (97)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 53
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=6.5e-11 Score=98.49 Aligned_cols=78 Identities=13% Similarity=0.213 Sum_probs=70.8
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecC------ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDH------IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~------IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
+..+.+++|||+||-.-+|..+|+++|+++|.|..++|-. -|++|||+|.+.++|.+|..+|||..| .++
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~ 82 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV----DGR 82 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT----TSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE----CCe
Confidence 3456789999999999999999999999999999888832 578999999999999999999999999 789
Q ss_pred cEEEeecC
Q 004904 591 PLVAEFVD 598 (724)
Q Consensus 591 ~LrVDFv~ 598 (724)
.|+|.|+.
T Consensus 83 ~l~v~~a~ 90 (102)
T 1x5s_A 83 QIRVDQAG 90 (102)
T ss_dssp CCEEEEEE
T ss_pred EEEEEECC
Confidence 99999975
No 54
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.19 E-value=4.3e-11 Score=102.07 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=71.2
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
+...++.++|||+||-.-+|..+|+++|+++|.|..++| .+-|++|||+|.+.++|.+|..+|||..| .+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g 94 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI----GM 94 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE----TT
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE----CC
Confidence 444567899999999999999999999999999988776 23468999999999999999999999999 78
Q ss_pred CcEEEeecCh
Q 004904 590 RPLVAEFVDP 599 (724)
Q Consensus 590 R~LrVDFv~p 599 (724)
+.|+|.|..+
T Consensus 95 ~~l~V~~a~~ 104 (115)
T 2cpz_A 95 KRLKVQLKRS 104 (115)
T ss_dssp EECEEECCCC
T ss_pred EEEEEEEcCC
Confidence 9999999753
No 55
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=4.2e-11 Score=101.55 Aligned_cols=78 Identities=10% Similarity=0.089 Sum_probs=72.7
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeec
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFV 597 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv 597 (724)
..+..++|||+||-.-+|..+|+++|+++|.|..++|-.-|++|||+|.+.++|.+|..+|||..| .|+.|+|.|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~a 96 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTI----EGHVVKCYWG 96 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEECC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEE----CCcEEEEEec
Confidence 456789999999999999999999999999999999977799999999999999999999999999 7899999997
Q ss_pred Ch
Q 004904 598 DP 599 (724)
Q Consensus 598 ~p 599 (724)
.+
T Consensus 97 ~~ 98 (109)
T 1x4g_A 97 KE 98 (109)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 56
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=5.2e-11 Score=102.69 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=71.9
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecChh
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVDPQ 600 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~pE 600 (724)
..++|||+||-.-+|..+|+++|+++|.|..++|-.-|++|||+|.+.++|.+|..+|||..+ .++.|+|+|+...
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V~~a~~~ 84 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKF----HHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBS----SSSBCEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEE----CCeEEEEEECCCC
Confidence 467999999999999999999999999999999999999999999999999999999999999 7899999998753
No 57
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.19 E-value=7.4e-11 Score=101.31 Aligned_cols=80 Identities=18% Similarity=0.226 Sum_probs=71.7
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
+...+++++|||+||-.-+|..+|+++|+++|.|..+.| ++.|++|||.|.+.++|.+|..+|||..+ .|
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i----~g 95 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL----AG 95 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS----SS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE----CC
Confidence 334567899999999999999999999999999998777 24578999999999999999999999999 88
Q ss_pred CcEEEeecCh
Q 004904 590 RPLVAEFVDP 599 (724)
Q Consensus 590 R~LrVDFv~p 599 (724)
+.|+|.|+.+
T Consensus 96 ~~l~V~~a~~ 105 (108)
T 2jrs_A 96 RPMKVGHVTE 105 (108)
T ss_dssp SCCEEECSCS
T ss_pred EEEEEEEccc
Confidence 9999999864
No 58
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.7e-11 Score=102.03 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=73.7
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
....+++|||+||-.-+|..+|+++|+++|.|..++|- +-|++|||+|.+.++|.+|..+|||..| .|+.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~ 79 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF----SGRA 79 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC----SSSC
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee----CCcE
Confidence 33467899999999999999999999999999887772 3389999999999999999999999999 7899
Q ss_pred EEEeecChhhhhhh
Q 004904 592 LVAEFVDPQEVKMR 605 (724)
Q Consensus 592 LrVDFv~pEeV~~~ 605 (724)
|+|.|+.+..-...
T Consensus 80 l~v~~a~~~~~~~~ 93 (104)
T 1p1t_A 80 LRVDNAASEKNKEE 93 (104)
T ss_dssp BEEEETTCTTHHHH
T ss_pred EEEEeCCCccchhh
Confidence 99999987655443
No 59
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.18 E-value=4e-11 Score=98.32 Aligned_cols=79 Identities=16% Similarity=0.226 Sum_probs=70.4
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
+...++.++|||+||-.-+|..+|+++|+++|.|..++| ++.|++|||+|.+.++|.+|...|||..+ .++
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~ 85 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL----YGR 85 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE----TTE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE----CCC
Confidence 444567899999999999999999999999999998888 34478999999999999999999999999 789
Q ss_pred cEEEeecC
Q 004904 591 PLVAEFVD 598 (724)
Q Consensus 591 ~LrVDFv~ 598 (724)
.|+|.|+.
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 99999875
No 60
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=6.2e-11 Score=99.07 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=71.9
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecC----ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDH----IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~----IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
+....+.++|||+||-.-+|..+|+++|+++|.|..++|-. -|++|||+|.+.++|.+|..+|||..| .++.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~ 84 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKI----LGKE 84 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEE----TTEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCc----CCCe
Confidence 33456789999999999999999999999999999888833 478999999999999999999999999 7899
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|.|+.+
T Consensus 85 l~V~~a~~ 92 (103)
T 2cqi_A 85 VKVNWATT 92 (103)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
Confidence 99999865
No 61
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=5.7e-11 Score=102.81 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=72.0
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhc--CCcCCCCCCCCcEEEee
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALY--NIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALh--G~vWP~en~gR~LrVDF 596 (724)
.+++++|||+||-.-.|..+|+++|++||.|..++|-+-|++|||+|.+.++|.+|..+|+ |..+ .||.|+|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~----~Gr~l~V~~ 87 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHL----RNQPIYIQY 87 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEE----TTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceE----CCcEEEEEE
Confidence 4678999999999999999999999999999999997779999999999999999999986 5556 789999999
Q ss_pred cChhhh
Q 004904 597 VDPQEV 602 (724)
Q Consensus 597 v~pEeV 602 (724)
+...++
T Consensus 88 a~~~~~ 93 (101)
T 2cq1_A 88 SNHKEL 93 (101)
T ss_dssp CSCSSC
T ss_pred cCcccC
Confidence 875444
No 62
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.18 E-value=6.9e-11 Score=104.22 Aligned_cols=75 Identities=19% Similarity=0.186 Sum_probs=70.3
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecC
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVD 598 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~ 598 (724)
.+++++|||+|| .+|..+|+++|+++|.|..++|.+-|++|||+|.+.++|.+|..+|||..+ .++.|+|.|+.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~----~g~~l~V~~a~ 109 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQV----ESVQLKVNIAR 109 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBC----SSCBCEEEECC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEEeC
Confidence 357899999996 799999999999999999999999999999999999999999999999999 78999999986
Q ss_pred h
Q 004904 599 P 599 (724)
Q Consensus 599 p 599 (724)
+
T Consensus 110 ~ 110 (121)
T 2bz2_A 110 K 110 (121)
T ss_dssp S
T ss_pred C
Confidence 4
No 63
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.9e-10 Score=96.57 Aligned_cols=82 Identities=13% Similarity=0.182 Sum_probs=71.2
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCC----C
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNN----G 588 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en----~ 588 (724)
..+..++|||+||-+-+|..+|+++|+++|.|..++| ..-|++|||+|.+.++|.+|...|||..|-... .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3456789999999999999999999999999998887 345789999999999999999999999984332 4
Q ss_pred CCcEEEeecCh
Q 004904 589 GRPLVAEFVDP 599 (724)
Q Consensus 589 gR~LrVDFv~p 599 (724)
+++|+|.|+.+
T Consensus 101 ~~~l~v~~a~p 111 (114)
T 1x5o_A 101 TEPLLCKFSGP 111 (114)
T ss_dssp SSCBEEEECCC
T ss_pred CCceeEEccCC
Confidence 78899999864
No 64
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.17 E-value=2.1e-10 Score=99.24 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=71.8
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec-----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD-----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD-----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
+...++++|||+||-.-+|..+|+++|+++|.|..++|- +-|++|||+|.+.++|.+|...|||..+ .|+.
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~ 105 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL----DGRP 105 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES----SSCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE----CCcE
Confidence 345678999999999999999999999999999988873 3689999999999999999999999999 7899
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|.|+.+
T Consensus 106 l~V~~a~~ 113 (124)
T 2kt5_A 106 MDIQLVAS 113 (124)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99999864
No 65
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=5.5e-11 Score=98.44 Aligned_cols=79 Identities=10% Similarity=0.155 Sum_probs=70.3
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCee-EEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFT-SFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~-~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
....++++|||+||-.-+|..+|+++|+++|.|. .++| | +-|++|||+|.+.++|.+|...|||..| .+
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g 79 (99)
T 2div_A 4 GSSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL----PG 79 (99)
T ss_dssp CCCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE----SS
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc----CC
Confidence 3456889999999999999999999999999998 8877 2 3568999999999999999999999999 66
Q ss_pred Cc----EEEeecCh
Q 004904 590 RP----LVAEFVDP 599 (724)
Q Consensus 590 R~----LrVDFv~p 599 (724)
+. |+|+|+.+
T Consensus 80 ~~~~~~l~v~~a~~ 93 (99)
T 2div_A 80 ATPAKRFKLNYATY 93 (99)
T ss_dssp CSSCEECCEEETTC
T ss_pred CCcceeEEEeecCC
Confidence 66 99999864
No 66
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.17 E-value=4.7e-11 Score=102.01 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=70.1
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
...+.+++|||+||-.-+|..+|+++|+++|.|..++| ++-|++|||+|.+.++|.+|..+|||..| .++
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~ 110 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV----GTK 110 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE----TTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE----CCE
Confidence 34567899999999999999999999999999998887 24488999999999999999999999999 789
Q ss_pred cEEEeec
Q 004904 591 PLVAEFV 597 (724)
Q Consensus 591 ~LrVDFv 597 (724)
.|+|+|.
T Consensus 111 ~l~V~~a 117 (118)
T 2khc_A 111 RLKVQLK 117 (118)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9999985
No 67
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=4.5e-11 Score=107.24 Aligned_cols=79 Identities=19% Similarity=0.195 Sum_probs=71.7
Q ss_pred CCCceEee--cccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcC-CCCCCCCcEEEee
Q 004904 520 SPTNSLRI--DHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQW-PPNNGGRPLVAEF 596 (724)
Q Consensus 520 PpT~aLyI--~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vW-P~en~gR~LrVDF 596 (724)
++|+.||| +||..-.|..+|+++|++||.|..+||..-|++|||+|.+.++|.+|..+|||..+ .....+++|+|+|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~ 102 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 102 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEe
Confidence 46899999 77999999999999999999999999977799999999999999999999999988 4443578999999
Q ss_pred cC
Q 004904 597 VD 598 (724)
Q Consensus 597 v~ 598 (724)
+-
T Consensus 103 a~ 104 (114)
T 2cq2_A 103 VE 104 (114)
T ss_dssp ES
T ss_pred cc
Confidence 75
No 68
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=5e-11 Score=97.92 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=69.7
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEE-Ee------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSF-WM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~F-WL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
.++.++|||+||-.-+|..+|+++|+++|.|..+ +| .+-|++|||+|.+.++|.+|..+|||..| .++.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~ 77 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL----CNRP 77 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE----TTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE----CCEE
Confidence 3578999999999999999999999999999877 66 23588999999999999999999999999 7899
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|.|+.+
T Consensus 78 l~v~~a~~ 85 (96)
T 1x5t_A 78 ITVSYAFK 85 (96)
T ss_dssp CEEEESCC
T ss_pred EEEEEecc
Confidence 99999753
No 69
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.16 E-value=6.6e-11 Score=101.84 Aligned_cols=76 Identities=13% Similarity=0.235 Sum_probs=70.6
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeec
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFV 597 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv 597 (724)
..+.+++|||+||-.-+|..+|+++|+++|.|..++|- |++|||+|.+.++|.+|..+|||..| .|+.|+|.|+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l~V~~a 100 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSF----ANQPLEVVYS 100 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEE----TTEECEEESC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEe
Confidence 35678999999999999999999999999999988887 99999999999999999999999999 7899999998
Q ss_pred Ch
Q 004904 598 DP 599 (724)
Q Consensus 598 ~p 599 (724)
.+
T Consensus 101 ~~ 102 (108)
T 2jvo_A 101 KL 102 (108)
T ss_dssp SC
T ss_pred cC
Confidence 64
No 70
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=7.4e-11 Score=98.44 Aligned_cols=78 Identities=13% Similarity=0.261 Sum_probs=70.3
Q ss_pred CCCCCCceEeecccCCCCCHHHHH----HHhcCcCCeeEEEecCc---cceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQ----ELLGKTGTFTSFWMDHI---KTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLk----ElLsetGtI~~FWLD~I---KSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
.+.+..+.|||+||-.-.|..+|+ ++|+++|.|..++|-.- |++|||+|.+.++|.+|..+|||..| .|
T Consensus 4 ~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~----~g 79 (96)
T 2dgx_A 4 GSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKI----GS 79 (96)
T ss_dssp CCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEE----TT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEE----CC
Confidence 345567899999999999999999 99999999999888322 89999999999999999999999999 89
Q ss_pred CcEEEeecC
Q 004904 590 RPLVAEFVD 598 (724)
Q Consensus 590 R~LrVDFv~ 598 (724)
|.|+|+|+.
T Consensus 80 r~l~V~~a~ 88 (96)
T 2dgx_A 80 KKILVSLAT 88 (96)
T ss_dssp EEEEEEECC
T ss_pred eEEEEEEcC
Confidence 999999975
No 71
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.16 E-value=8.9e-11 Score=104.34 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=72.5
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
+...+++++|||+||-.-+|..+|+++|+++|.|..++| ++.|++|||+|.+.++|.+|..+|+|..| .|
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i----~g 115 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL----DG 115 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS----SS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE----CC
Confidence 334567899999999999999999999999999998888 35689999999999999999999999999 78
Q ss_pred CcEEEeecCh
Q 004904 590 RPLVAEFVDP 599 (724)
Q Consensus 590 R~LrVDFv~p 599 (724)
+.|+|.|+.+
T Consensus 116 ~~l~V~~a~~ 125 (129)
T 2kxn_B 116 RRIRVDFSIT 125 (129)
T ss_dssp SCCEESCCSS
T ss_pred EEEEEEEecC
Confidence 9999999864
No 72
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.16 E-value=5.5e-11 Score=100.95 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=70.1
Q ss_pred CCCCCceEeecccCCC-CCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 518 PKSPTNSLRIDHFVRP-FTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRP-FT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
+.+.+++|||+||-.- +|..+|+++|+++|.|..++| -|++|||+|.+.++|.+|..+|||..| .++.|+|.|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~V~~ 96 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVL----AGQTLDINM 96 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEE----TTEECCEEE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEE
Confidence 3456789999999999 999999999999999999999 799999999999999999999999999 789999999
Q ss_pred cC
Q 004904 597 VD 598 (724)
Q Consensus 597 v~ 598 (724)
+.
T Consensus 97 a~ 98 (110)
T 1wf1_A 97 AG 98 (110)
T ss_dssp SC
T ss_pred CC
Confidence 75
No 73
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.16 E-value=1.4e-10 Score=98.60 Aligned_cols=78 Identities=12% Similarity=0.135 Sum_probs=70.1
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
.....++|||+||-.-+|..+|+++|+++|.|..++|- ..|++|||+|.+.++|.+|..+|||..+ .++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~ 86 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL----GGRQ 86 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE----TTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE----CCEE
Confidence 34578999999999999999999999999999987772 3378999999999999999999999999 8899
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|.|+.+
T Consensus 87 l~V~~a~~ 94 (115)
T 2dgo_A 87 IRTNWATR 94 (115)
T ss_dssp CEEEESSC
T ss_pred EEEEEccC
Confidence 99999763
No 74
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.3e-10 Score=96.67 Aligned_cols=78 Identities=18% Similarity=0.315 Sum_probs=70.5
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCc--CCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEE
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKT--GTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLV 593 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLset--GtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~Lr 593 (724)
+...+++++|||+||-.-+|..+|+++|+++ |.|..+.+ +|++|||+|.+.++|.+|..+|||..| .++.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~ 82 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVL----DGSPIE 82 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEE----TTEEEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEe----CCcEEE
Confidence 3445678999999999999999999999999 89987765 589999999999999999999999999 789999
Q ss_pred EeecCh
Q 004904 594 AEFVDP 599 (724)
Q Consensus 594 VDFv~p 599 (724)
|.|+.+
T Consensus 83 v~~a~~ 88 (99)
T 2cpd_A 83 VTLAKP 88 (99)
T ss_dssp EECCCC
T ss_pred EEECCC
Confidence 999753
No 75
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.16 E-value=2.1e-11 Score=101.78 Aligned_cols=74 Identities=15% Similarity=0.252 Sum_probs=66.8
Q ss_pred CceEeecccCCCCCHHHHHHHhcCcC-CeeEEEe------cCccceEEEEecCHHHHHHHHHHhc-CCcCCCCCCCCcEE
Q 004904 522 TNSLRIDHFVRPFTLRAVQELLGKTG-TFTSFWM------DHIKTHCYVTYSSVEEAIETRNALY-NIQWPPNNGGRPLV 593 (724)
Q Consensus 522 T~aLyI~NLvRPFT~~qLkElLsetG-tI~~FWL------D~IKSHCYVtFsSVEeA~aARsALh-G~vWP~en~gR~Lr 593 (724)
|++|||+||-.-+|..+|+++|+++| .|.++.| .+-|++|||+|.+.++|.+|..+|+ |..+ .||.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~----~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNI----LGQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEE----TTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEE----CCEEEE
Confidence 68999999999999999999999999 7888877 4568999999999999999999985 5677 789999
Q ss_pred EeecCh
Q 004904 594 AEFVDP 599 (724)
Q Consensus 594 VDFv~p 599 (724)
|+|+.+
T Consensus 77 V~~a~~ 82 (91)
T 2lxi_A 77 MHYSDP 82 (91)
T ss_dssp EECCCS
T ss_pred EEEcCC
Confidence 999865
No 76
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1e-10 Score=96.31 Aligned_cols=78 Identities=21% Similarity=0.240 Sum_probs=69.8
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEE-Ee--cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSF-WM--DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~F-WL--D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
..+++|||+||-.-+|..+|+++|+++|.|..+ +| ++-.+.|||+|.+.++|.+|..+|||..| .|+.|+|+|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~----~g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQL----ENFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBC----SSCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEE----CCcEEEEEE
Confidence 457899999999999999999999999999877 34 55556699999999999999999999999 789999999
Q ss_pred cChhh
Q 004904 597 VDPQE 601 (724)
Q Consensus 597 v~pEe 601 (724)
+.+.+
T Consensus 89 a~~~~ 93 (96)
T 2e44_A 89 IPDEM 93 (96)
T ss_dssp CCCCC
T ss_pred cCccc
Confidence 98764
No 77
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.15 E-value=4.9e-11 Score=100.69 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=69.9
Q ss_pred CCceEeecccCC------CCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 004904 521 PTNSLRIDHFVR------PFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG 588 (724)
Q Consensus 521 pT~aLyI~NLvR------PFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~ 588 (724)
..++|||+||-. ..+..+|+++|+++|.|.+++| .+-|++|||+|.+.++|.+|..+|||..| .
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~----~ 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL----D 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS----S
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc----C
Confidence 468999999998 8899999999999999999888 55789999999999999999999999999 6
Q ss_pred C-CcEEEeecChh
Q 004904 589 G-RPLVAEFVDPQ 600 (724)
Q Consensus 589 g-R~LrVDFv~pE 600 (724)
| +.|+|.++.+-
T Consensus 81 g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 81 LKHRLFLYTMKDV 93 (100)
T ss_dssp SSCBCEEEESHHH
T ss_pred CCeEEEEEECchh
Confidence 7 99999998764
No 78
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=9.2e-11 Score=98.64 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=70.3
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCC-eeEEEec-------CccceEEEEecCHHHHHHHHHHhc--CCcCCCCCC
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGT-FTSFWMD-------HIKTHCYVTYSSVEEAIETRNALY--NIQWPPNNG 588 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGt-I~~FWLD-------~IKSHCYVtFsSVEeA~aARsALh--G~vWP~en~ 588 (724)
.++.++|||+||-.-+|..+|+++|+++|. |..++|- +.|++|||+|.+.++|.+|..+|| |..| .
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~----~ 80 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL----W 80 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB----T
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee----c
Confidence 457899999999999999999999999998 9988885 678999999999999999999997 5888 7
Q ss_pred CCcEEEeecCh
Q 004904 589 GRPLVAEFVDP 599 (724)
Q Consensus 589 gR~LrVDFv~p 599 (724)
++.|+|+|+.+
T Consensus 81 g~~l~V~~a~~ 91 (109)
T 2dis_A 81 GHQIAVDWAEP 91 (109)
T ss_dssp TBCCEEEESCS
T ss_pred CCeEEEEEcCC
Confidence 89999999864
No 79
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.14 E-value=5.8e-11 Score=101.58 Aligned_cols=81 Identities=11% Similarity=0.215 Sum_probs=71.3
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCC--eeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGT--FTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGt--I~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
.+..-++|||+||-.-.|.++|+++|+++|. |.+++| ++-|++|||+|.+.++|.+|..+|||..||-.-.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4567789999999999999999999999995 557776 45588999999999999999999999998755568
Q ss_pred CcEEEeecC
Q 004904 590 RPLVAEFVD 598 (724)
Q Consensus 590 R~LrVDFv~ 598 (724)
|.|+|+|+-
T Consensus 85 r~i~V~~Ak 93 (95)
T 2lkz_A 85 KTIGVDFAK 93 (95)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEEcc
Confidence 999999974
No 80
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=7.5e-11 Score=100.94 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=71.8
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
...+.+++|||+||-.-+|..+|+++|+++|.|..++| ++-|++|||+|.+.++|.+|..+|||..+ .|+.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l 99 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVV----EGRKI 99 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEE----TTEEC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEE----CCEEE
Confidence 34567899999999999999999999999999998887 34589999999999999999999999999 88999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|.|+.+
T Consensus 100 ~V~~a~~ 106 (109)
T 2err_A 100 EVNNATA 106 (109)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999865
No 81
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.4e-10 Score=104.32 Aligned_cols=84 Identities=21% Similarity=0.232 Sum_probs=74.3
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcC--CcCCCCCCCCcEE
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYN--IQWPPNNGGRPLV 593 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG--~vWP~en~gR~Lr 593 (724)
....+++++|||+||-.-.|..+|+++|++||.|..++|-.-|++|||+|.+.++|.+|..+|+| ..+ .||.|+
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l----~Gr~l~ 100 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVL----RGQPIY 100 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCB----TTBCCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceE----CCeEEE
Confidence 44557889999999999999999999999999999999977799999999999999999999985 556 789999
Q ss_pred EeecChhhhh
Q 004904 594 AEFVDPQEVK 603 (724)
Q Consensus 594 VDFv~pEeV~ 603 (724)
|+|+...++.
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9998755443
No 82
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=1.4e-10 Score=98.33 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=69.4
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCee--------EEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcC
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFT--------SFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQW 583 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~--------~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vW 583 (724)
....+++|||+||-.-+|..+|+++|+++|.|. .++| | +.|++|||+|.+.++|.+|..+|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 456789999999999999999999999999997 3555 3 4588999999999999999999999999
Q ss_pred CCCCCCCcEEEeecCh
Q 004904 584 PPNNGGRPLVAEFVDP 599 (724)
Q Consensus 584 P~en~gR~LrVDFv~p 599 (724)
.++.|+|.|+.+
T Consensus 91 ----~g~~l~V~~a~~ 102 (113)
T 2cpe_A 91 ----QGSKLKVSLARK 102 (113)
T ss_dssp ----TTEECEEECSSC
T ss_pred ----CCCEEEEEECCC
Confidence 789999999763
No 83
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.13 E-value=1.2e-10 Score=97.48 Aligned_cols=78 Identities=17% Similarity=0.312 Sum_probs=69.3
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
+...++.++|||+||-+-+|..+|+++|+++| |..++| ++.|++|||+|.+.++|.+|. .|||..| .+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~----~g 82 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL----GD 82 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE----TT
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE----CC
Confidence 34456789999999999999999999999998 888777 345789999999999999999 9999999 78
Q ss_pred CcEEEeecCh
Q 004904 590 RPLVAEFVDP 599 (724)
Q Consensus 590 R~LrVDFv~p 599 (724)
+.|+|.|+.+
T Consensus 83 ~~l~V~~a~~ 92 (103)
T 2dng_A 83 RSLRVDIAEG 92 (103)
T ss_dssp EECEEEECCC
T ss_pred eEEEEEEecC
Confidence 9999999863
No 84
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.13 E-value=5.5e-11 Score=97.53 Aligned_cols=77 Identities=10% Similarity=0.097 Sum_probs=66.4
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
.|+.++|||+||-.-+|..+|+++|.++|.|...+| .+.|++|||+|.+.++|.+|..+|||..| .++.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~gr~l 87 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI----GSRKV 87 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE----CCcEE
Confidence 456799999999999999999999999999874443 24679999999999999999999999999 88999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|+|+..
T Consensus 88 ~v~~a~s 94 (95)
T 2ek1_A 88 KLSGPSS 94 (95)
T ss_dssp EEECCC-
T ss_pred EEEeccC
Confidence 9999763
No 85
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.13 E-value=1.6e-10 Score=103.77 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=70.2
Q ss_pred CCCCceEeecccCCCCCHHHHH----HHhcCcCCeeEEEec---CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQ----ELLGKTGTFTSFWMD---HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLk----ElLsetGtI~~FWLD---~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
.+++++|||+||-.-++...|+ ++|+++|.|..++|. +-|++|||+|.+.++|.+|..+|||..+ .|+.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l----~gr~ 101 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF----QGNP 101 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC----TTSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe----CCCE
Confidence 4678999999999999998876 688999999999984 5689999999999999999999999998 7899
Q ss_pred EEEeecChh
Q 004904 592 LVAEFVDPQ 600 (724)
Q Consensus 592 LrVDFv~pE 600 (724)
|+|+|+...
T Consensus 102 l~V~~a~~~ 110 (127)
T 2a3j_A 102 LVITFSETP 110 (127)
T ss_dssp CEEEECCCC
T ss_pred EEEEEccCc
Confidence 999998643
No 86
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.13 E-value=1.3e-10 Score=105.87 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=70.5
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
|...+++++|||+||-.-+|..+|+++|+++|.|..++|- ..|++|||+|.+.++|.+|..+|||..| .|
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g 141 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI----MG 141 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE----CC
Confidence 4456778999999999999999999999999999977773 2489999999999999999999999999 78
Q ss_pred CcEEEeecC
Q 004904 590 RPLVAEFVD 598 (724)
Q Consensus 590 R~LrVDFv~ 598 (724)
+.|+|.|+.
T Consensus 142 ~~l~V~~a~ 150 (165)
T 1rk8_A 142 QTIQVDWCF 150 (165)
T ss_dssp EECEEEESE
T ss_pred EEEEEEEec
Confidence 999999975
No 87
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.13 E-value=1.1e-10 Score=100.80 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=66.8
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
.+..|||+||-.-+|..+|+++|+++|.|.++.| +.-|++|||+|.+.++|.+|..+|||..| .|+.|+|+|
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~----~g~~i~V~~ 79 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGR 79 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEE----TTEECEEEE
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEE----CCEEEEEEE
Confidence 4567999999999999999999999999998877 23478999999999999999999999999 789999998
Q ss_pred cC
Q 004904 597 VD 598 (724)
Q Consensus 597 v~ 598 (724)
..
T Consensus 80 a~ 81 (115)
T 4f25_A 80 FK 81 (115)
T ss_dssp SS
T ss_pred CC
Confidence 64
No 88
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.13 E-value=1.3e-10 Score=98.60 Aligned_cols=80 Identities=10% Similarity=0.174 Sum_probs=71.1
Q ss_pred CCCCCCCceEeecccCCCC------CHHHHHHHhcCcCCeeEEEec----CccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPF------TLRAVQELLGKTGTFTSFWMD----HIKTHCYVTYSSVEEAIETRNALYNIQWPP 585 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPF------T~~qLkElLsetGtI~~FWLD----~IKSHCYVtFsSVEeA~aARsALhG~vWP~ 585 (724)
+.....+++|||+||-.-. |..+|+++|+++|.|..++|- +-|++|||+|.+.++|.+|..+|||..|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~-- 86 (105)
T 2nlw_A 9 QEADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL-- 86 (105)
T ss_dssp CSCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC--
T ss_pred CCCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCccc--
Confidence 3344567899999999988 789999999999999999985 4579999999999999999999999999
Q ss_pred CCCCC-cEEEeecCh
Q 004904 586 NNGGR-PLVAEFVDP 599 (724)
Q Consensus 586 en~gR-~LrVDFv~p 599 (724)
.|+ .|+|.|+..
T Consensus 87 --~g~~~l~V~~a~~ 99 (105)
T 2nlw_A 87 --DKQHTFRVNLFTD 99 (105)
T ss_dssp --STTCEEEEECSCC
T ss_pred --CCCceEEEEEcch
Confidence 787 999999863
No 89
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=6.3e-11 Score=97.35 Aligned_cols=77 Identities=17% Similarity=0.246 Sum_probs=68.9
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCC-eeEEEecCccceEEEEecCHHHHHHHHHHhcC-CcCCCCCCCCcEEEe
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGT-FTSFWMDHIKTHCYVTYSSVEEAIETRNALYN-IQWPPNNGGRPLVAE 595 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGt-I~~FWLD~IKSHCYVtFsSVEeA~aARsALhG-~vWP~en~gR~LrVD 595 (724)
..+++++|||+||-.-+|..+|+++|+++|. |...+| .-|++|||+|.+.++|.+|..+||| ..| .++.|+|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~----~g~~l~v~ 78 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVEL----HGKIMEVD 78 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEE----TTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeE----CCEEEEEE
Confidence 4567899999999999999999999999999 655555 4589999999999999999999999 888 78999999
Q ss_pred ecCh
Q 004904 596 FVDP 599 (724)
Q Consensus 596 Fv~p 599 (724)
|+.+
T Consensus 79 ~a~~ 82 (93)
T 2cqh_A 79 YSVS 82 (93)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9863
No 90
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=1.3e-10 Score=98.64 Aligned_cols=79 Identities=20% Similarity=0.333 Sum_probs=69.4
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCe----eEEEe--cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTF----TSFWM--DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI----~~FWL--D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
...+++++|||+||-.-+|..+|+++|+++|.| ..+.+ .+-|++|||+|.+.++|.+|..+|||..| .++
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~g~ 95 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL----YGK 95 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC----SSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe----CCc
Confidence 345678999999999999999999999999987 33333 56689999999999999999999999999 789
Q ss_pred cEEEeecCh
Q 004904 591 PLVAEFVDP 599 (724)
Q Consensus 591 ~LrVDFv~p 599 (724)
.|+|.|+.+
T Consensus 96 ~l~v~~a~~ 104 (115)
T 2cpx_A 96 ILVIEFGKN 104 (115)
T ss_dssp BCEEEECCC
T ss_pred EEEEEEccC
Confidence 999999864
No 91
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.12 E-value=8.2e-11 Score=102.68 Aligned_cols=76 Identities=12% Similarity=0.166 Sum_probs=70.1
Q ss_pred CCCceEeecccCC-CCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCC--cCCCCCCCCcEEEee
Q 004904 520 SPTNSLRIDHFVR-PFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNI--QWPPNNGGRPLVAEF 596 (724)
Q Consensus 520 PpT~aLyI~NLvR-PFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~--vWP~en~gR~LrVDF 596 (724)
.+++.|||+||-. -.|..+|+++|.+||.|.++||-+-|++|||.|.+.++|.+|..+|||. .+ .||.|+|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~----~Gr~l~V~~ 88 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALV----FGKPVRVHL 88 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEE----TTEECEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceE----CCcEEEEEE
Confidence 4789999999999 9999999999999999999999888899999999999999999999975 36 689999999
Q ss_pred cCh
Q 004904 597 VDP 599 (724)
Q Consensus 597 v~p 599 (724)
+..
T Consensus 89 a~~ 91 (102)
T 1x4d_A 89 SQK 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 863
No 92
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.12 E-value=1.4e-10 Score=100.59 Aligned_cols=76 Identities=11% Similarity=0.213 Sum_probs=69.4
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
..+++++|||+||-.-+|..+|+++|+++|.|..+.| ++-|++|||+|.+.++|.+|..+|||..+ .|+.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~ 134 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL----FGRT 134 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE----TTEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE----CCEE
Confidence 3457899999999999999999999999999998888 45689999999999999999999999999 7899
Q ss_pred EEEeec
Q 004904 592 LVAEFV 597 (724)
Q Consensus 592 LrVDFv 597 (724)
|+|.|+
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999985
No 93
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.12 E-value=1.5e-10 Score=103.80 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=70.8
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
.+++++|||+||-.-+|..+|+++|+++|.|..++| ...|++|||+|.+.++|.+|..+|||..| .++.|
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~g~~l 111 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL----DDRII 111 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE----TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE----CCeEE
Confidence 457899999999999999999999999999998888 44678999999999999999999999999 78999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|+|+.+
T Consensus 112 ~V~~a~~ 118 (156)
T 1h2v_Z 112 RTDWDAG 118 (156)
T ss_dssp EEEEESC
T ss_pred EEEECCC
Confidence 9999863
No 94
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.12 E-value=9.9e-11 Score=96.06 Aligned_cols=75 Identities=15% Similarity=0.274 Sum_probs=70.8
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecChh
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVDPQ 600 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~pE 600 (724)
..++|||+||-.-.|..+|+++|+++ .|..++|++-|++|||+|.+.++|.+|..+|||..| .|+.|+|+|++..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSF----RGKDLIVQLQPTD 78 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEE----TTEEEEEEECCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeE----CCcEEEEEEcCCC
Confidence 56889999999999999999999999 999999999999999999999999999999999999 8999999998653
No 95
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.11 E-value=7.7e-11 Score=99.01 Aligned_cols=80 Identities=15% Similarity=0.296 Sum_probs=65.7
Q ss_pred CCCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec-------CccceEEEEecCHHHHHHHHHHhcCCcCCCC
Q 004904 514 VPPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD-------HIKTHCYVTYSSVEEAIETRNALYNIQWPPN 586 (724)
Q Consensus 514 VpPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD-------~IKSHCYVtFsSVEeA~aARsALhG~vWP~e 586 (724)
.++..++..++|||+||-.-+|..+|+++|+++| |..++|- +-|++|||+|.+.++|.+|. +|||..|
T Consensus 11 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~--- 85 (100)
T 2j76_E 11 RSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL--- 85 (100)
T ss_dssp ---------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB---
T ss_pred CCcCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE---
Confidence 4455678899999999999999999999999999 9988883 24789999999999999999 9999999
Q ss_pred CCCCcEEEeecCh
Q 004904 587 NGGRPLVAEFVDP 599 (724)
Q Consensus 587 n~gR~LrVDFv~p 599 (724)
.|+.|+|+|+.+
T Consensus 86 -~g~~l~V~~a~~ 97 (100)
T 2j76_E 86 -GNRRIRVDVADQ 97 (100)
T ss_dssp -TTBCCCCEECCC
T ss_pred -CCeEEEEEeccC
Confidence 889999999864
No 96
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=1.5e-10 Score=99.49 Aligned_cols=79 Identities=20% Similarity=0.231 Sum_probs=70.4
Q ss_pred CCCCCCceEeecccCCCCC-----------HHHHHHHhcCcCCeeEEEe--cCccceEEEEecCHHHHHHHHHHhcCCcC
Q 004904 517 SPKSPTNSLRIDHFVRPFT-----------LRAVQELLGKTGTFTSFWM--DHIKTHCYVTYSSVEEAIETRNALYNIQW 583 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT-----------~~qLkElLsetGtI~~FWL--D~IKSHCYVtFsSVEeA~aARsALhG~vW 583 (724)
...+++++|+|.||..|-. ..+|+++|+++|.|..++| ...|++|||+|.+.++|.+|..+|||..+
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 4556899999999999876 5789999999999999887 23589999999999999999999999999
Q ss_pred CCCCCCCcEEEeecCh
Q 004904 584 PPNNGGRPLVAEFVDP 599 (724)
Q Consensus 584 P~en~gR~LrVDFv~p 599 (724)
.+|.|+|+|+.+
T Consensus 90 ----~gr~l~v~~a~~ 101 (112)
T 2dit_A 90 ----GGRQITAQAWDG 101 (112)
T ss_dssp ----TTEECEEEECCS
T ss_pred ----CCcEEEEEEeCC
Confidence 789999999864
No 97
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=1.5e-10 Score=96.63 Aligned_cols=78 Identities=14% Similarity=0.115 Sum_probs=70.0
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcC-cCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCc-CCCCCCCC
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGK-TGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQ-WPPNNGGR 590 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLse-tGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~v-WP~en~gR 590 (724)
..+++++|||+||-.-+|..+|+++|++ +|.|..++| ++-|++|||+|.+.++|.+|..+|||.. + .++
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----~g~ 80 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGL----GSK 80 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSS----SSS
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCccc----CCE
Confidence 3467899999999999999999999999 999998877 2358999999999999999999999999 8 788
Q ss_pred cEEEeecCh
Q 004904 591 PLVAEFVDP 599 (724)
Q Consensus 591 ~LrVDFv~p 599 (724)
.|+|.|+.+
T Consensus 81 ~l~v~~a~~ 89 (104)
T 2dhg_A 81 PVRLSVAIP 89 (104)
T ss_dssp CCCCCBCCC
T ss_pred eEEEEEccC
Confidence 899988753
No 98
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.10 E-value=1.8e-10 Score=101.01 Aligned_cols=77 Identities=13% Similarity=0.167 Sum_probs=69.9
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
...+++|||+||-.-+|..+|+++|+.+|.|..++| + +-|++|||+|.+.++|.+|..+|||..| .++.|
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l 114 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI----LNKRL 114 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC----SSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE----CCeEE
Confidence 457899999999999999999999999999998777 2 3488999999999999999999999999 78999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|+|+.+
T Consensus 115 ~v~~a~~ 121 (139)
T 1u6f_A 115 KVALAAS 121 (139)
T ss_dssp EEEESSC
T ss_pred EEEECCC
Confidence 9999764
No 99
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=1.6e-10 Score=98.34 Aligned_cols=77 Identities=10% Similarity=0.212 Sum_probs=70.5
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
.+++|||+||-.-+|..+|+++|+++|.|..++| .+.|++|||+|.+.++|.+|. +|||..| .++.|+|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~----~g~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL----LGVPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE----TTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe----CCeEEEE
Confidence 4689999999999999999999999999998888 456899999999999999999 9999999 7899999
Q ss_pred eecChhhh
Q 004904 595 EFVDPQEV 602 (724)
Q Consensus 595 DFv~pEeV 602 (724)
.|+.+..-
T Consensus 99 ~~a~~~~~ 106 (114)
T 2cq4_A 99 QASQAEKN 106 (114)
T ss_dssp EEHHHHHH
T ss_pred EecCCCcc
Confidence 99876543
No 100
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.10 E-value=2.9e-10 Score=101.30 Aligned_cols=80 Identities=11% Similarity=0.181 Sum_probs=72.8
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCc-cceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHI-KTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~I-KSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
+...++.++|||+||-.-+|..+|+++|+++|.|...+|-.- |++|||+|.+.++|.+|..+|||..+ .|+.|+|
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v 142 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTL----CGCRVRV 142 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCS----SSSCCEE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEE
Confidence 344567899999999999999999999999999999888554 99999999999999999999999998 7899999
Q ss_pred eecCh
Q 004904 595 EFVDP 599 (724)
Q Consensus 595 DFv~p 599 (724)
.|+.+
T Consensus 143 ~~a~~ 147 (150)
T 2i2y_A 143 ELSNG 147 (150)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99864
No 101
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.09 E-value=3.4e-10 Score=99.49 Aligned_cols=84 Identities=17% Similarity=0.303 Sum_probs=69.9
Q ss_pred CCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeE--EEe--cC----ccceEEEEecCHHHHHHHHHHhcCCcCCCC
Q 004904 515 PPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTS--FWM--DH----IKTHCYVTYSSVEEAIETRNALYNIQWPPN 586 (724)
Q Consensus 515 pPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~--FWL--D~----IKSHCYVtFsSVEeA~aARsALhG~vWP~e 586 (724)
.+....+++.|||+||-+-.|..+|+++|+++|.|.. ++| |+ -|++|||+|.+. +|.+|...|||...|-.
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3444567889999999999999999999999999954 554 43 689999999999 99999999999933322
Q ss_pred CCCCcEEEeecCh
Q 004904 587 NGGRPLVAEFVDP 599 (724)
Q Consensus 587 n~gR~LrVDFv~p 599 (724)
-.||.|+|+|+.+
T Consensus 95 ~~gr~l~V~~a~~ 107 (131)
T 2m2b_A 95 IDGKTINVEFAKG 107 (131)
T ss_dssp GGGCCCCCEECCC
T ss_pred CCCEEEEEEECCC
Confidence 2789999999875
No 102
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.09 E-value=1.6e-10 Score=105.79 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=70.3
Q ss_pred CCCCCCceEe--ecccCCCCCHHHHHHHhcCcCCeeEEEe-cCccce-EEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 517 SPKSPTNSLR--IDHFVRPFTLRAVQELLGKTGTFTSFWM-DHIKTH-CYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 517 s~hPpT~aLy--I~NLvRPFT~~qLkElLsetGtI~~FWL-D~IKSH-CYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
.+.++++.|+ |+||.++.|...|+++|++||.|.+.+| .+-|++ |||.|.+.++|.+|+.+|||..|=. +.+.|
T Consensus 21 ~~~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g--~~~~L 98 (130)
T 3zzy_A 21 AMAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTL 98 (130)
T ss_dssp ----CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEET--TEEEE
T ss_pred ccCCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecC--CCcEE
Confidence 3445667665 9999999999999999999999999888 444666 9999999999999999999999922 12789
Q ss_pred EEeecChhhhhhh
Q 004904 593 VAEFVDPQEVKMR 605 (724)
Q Consensus 593 rVDFv~pEeV~~~ 605 (724)
+|+|+.+..+...
T Consensus 99 rI~~ak~~~l~v~ 111 (130)
T 3zzy_A 99 RIDFSKLTSLNVK 111 (130)
T ss_dssp EEEECSCSSCCCC
T ss_pred EEEecCCCceeEE
Confidence 9999987655433
No 103
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=2.6e-10 Score=97.34 Aligned_cols=77 Identities=9% Similarity=0.018 Sum_probs=69.2
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
...++.++|||+||-.-+|..+|+++|+++|.|..++|- +-|++|||+|.+.++|.+|...|+| .| .++
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~----~g~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-II----DGR 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EE----TTE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cC----CCE
Confidence 345678999999999999999999999999999988883 3578999999999999999999999 67 689
Q ss_pred cEEEeecC
Q 004904 591 PLVAEFVD 598 (724)
Q Consensus 591 ~LrVDFv~ 598 (724)
.|+|+|+.
T Consensus 87 ~l~V~~a~ 94 (116)
T 2cqd_A 87 KANVNLAY 94 (116)
T ss_dssp ECEEEEST
T ss_pred EEEEEEcc
Confidence 99999975
No 104
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=2.2e-10 Score=95.44 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=68.5
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEe
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAE 595 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVD 595 (724)
..+++++|||+||-.-+|..+|+++|+++|.|.-.+. .+.|++|||+|.+.++|.+|..+|||..| .++.|+|+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFIKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI----EGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEEECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE----TTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe----CCeEEEEE
Confidence 4567899999999999999999999999999832222 35689999999999999999999999999 78999999
Q ss_pred ecCh
Q 004904 596 FVDP 599 (724)
Q Consensus 596 Fv~p 599 (724)
|+.+
T Consensus 87 ~a~~ 90 (101)
T 2fc9_A 87 LQGP 90 (101)
T ss_dssp ECSS
T ss_pred EcCC
Confidence 9864
No 105
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.08 E-value=1.3e-10 Score=95.72 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=62.8
Q ss_pred ceEeecccCCCCCHHHHHHHhcCcC--CeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 523 NSLRIDHFVRPFTLRAVQELLGKTG--TFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 523 ~aLyI~NLvRPFT~~qLkElLsetG--tI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
.+|||+||-.-.|..+|+++|+++| .|.+++| | +-|++|||+|.+.++|.+|..+|||..| .||.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~----~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL----HGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS----SSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee----CCEEEEE
Confidence 3799999999999999999999999 8887766 3 4578999999999999999999999999 8899999
Q ss_pred eecCh
Q 004904 595 EFVDP 599 (724)
Q Consensus 595 DFv~p 599 (724)
.++.+
T Consensus 78 ~~~~~ 82 (90)
T 3p5t_L 78 TPSNK 82 (90)
T ss_dssp CCC--
T ss_pred EECCC
Confidence 88763
No 106
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.08 E-value=3e-10 Score=96.58 Aligned_cols=78 Identities=9% Similarity=0.087 Sum_probs=70.0
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC-----Cc
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG-----RP 591 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g-----R~ 591 (724)
++....+.|||+||-.-+|..+|+++|.++|.|..++|-.- ++|||+|.+.++|.+|..+|||..+ .+ +.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~----~g~~~~~~~ 84 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKF----RSHEGETAY 84 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEE----ECTTSCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCc----cCCcCcceE
Confidence 34457889999999999999999999999999998887433 9999999999999999999999999 66 89
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|+|+.+
T Consensus 85 i~V~~a~~ 92 (108)
T 1x4c_A 85 IRVKVDGP 92 (108)
T ss_dssp EEEEESSC
T ss_pred EEEEeCCC
Confidence 99999864
No 107
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.08 E-value=1.5e-10 Score=103.12 Aligned_cols=77 Identities=12% Similarity=0.301 Sum_probs=70.2
Q ss_pred CCCCceEeecccCCC-CCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcC--CcCCCCCCCCcEEEe
Q 004904 519 KSPTNSLRIDHFVRP-FTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYN--IQWPPNNGGRPLVAE 595 (724)
Q Consensus 519 hPpT~aLyI~NLvRP-FT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG--~vWP~en~gR~LrVD 595 (724)
.+++++|||+||-.- .|..+|+++|.+||.|..+||-+-|++|||.|.+.++|.+|..+|+| ..+ .||.|+|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l----~Gr~l~V~ 97 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWF----QGRCVKVD 97 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCS----SSSCCEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceE----CCEEEEEE
Confidence 456899999999997 99999999999999999999988899999999999999999999975 445 68999999
Q ss_pred ecCh
Q 004904 596 FVDP 599 (724)
Q Consensus 596 Fv~p 599 (724)
|+..
T Consensus 98 ~a~~ 101 (112)
T 1x4f_A 98 LSEK 101 (112)
T ss_dssp EECS
T ss_pred ECcc
Confidence 9853
No 108
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=1.4e-10 Score=102.69 Aligned_cols=79 Identities=20% Similarity=0.219 Sum_probs=71.4
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcC--CcCCCCCCCCcEEEee
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYN--IQWPPNNGGRPLVAEF 596 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG--~vWP~en~gR~LrVDF 596 (724)
.++.++|||+||-.-.|..+|+++|+++|.|..++|-+-|++|||+|.+.++|.+|..+|+| ..+ .||.|+|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l----~Gr~l~V~~ 88 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVL----RGQPIYIQF 88 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEE----TTEECCBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceE----CCEEEEEEE
Confidence 35789999999999999999999999999999999977799999999999999999999975 566 789999999
Q ss_pred cChhh
Q 004904 597 VDPQE 601 (724)
Q Consensus 597 v~pEe 601 (724)
+.+..
T Consensus 89 A~~~~ 93 (105)
T 1sjq_A 89 SNHKE 93 (105)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 86543
No 109
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.07 E-value=2.8e-10 Score=98.71 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=72.6
Q ss_pred CCCceEeecccCCCCCH----------HHHHHHhcCcCCeeEEEec--------CccceEEEEecCHHHHHHHHHHhcCC
Q 004904 520 SPTNSLRIDHFVRPFTL----------RAVQELLGKTGTFTSFWMD--------HIKTHCYVTYSSVEEAIETRNALYNI 581 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~----------~qLkElLsetGtI~~FWLD--------~IKSHCYVtFsSVEeA~aARsALhG~ 581 (724)
.||+.|.|.|++.|-.+ .+|+++++++|.|.+++|. +-|++|||+|.+.++|.+|..+|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 58999999999998443 5899999999999999994 35799999999999999999999999
Q ss_pred cCCCCCCCCcEEEeecChhhhhh
Q 004904 582 QWPPNNGGRPLVAEFVDPQEVKM 604 (724)
Q Consensus 582 vWP~en~gR~LrVDFv~pEeV~~ 604 (724)
.+ +||.|++.|.+++....
T Consensus 83 ~f----~GR~i~v~~~~~~~f~~ 101 (105)
T 3v4m_A 83 KF----ANRVVVTKYCDPDSYHR 101 (105)
T ss_dssp EE----TTEECEEEEECHHHHHT
T ss_pred Ee----CCCEEEEEEeCHHHHhh
Confidence 99 89999999999987753
No 110
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.07 E-value=2.4e-10 Score=95.20 Aligned_cols=73 Identities=10% Similarity=0.170 Sum_probs=67.8
Q ss_pred ceEeecccCCCCCHHHHHHHhcCcCCeeEEEecC-ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecCh
Q 004904 523 NSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDH-IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVDP 599 (724)
Q Consensus 523 ~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~-IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~p 599 (724)
++|||+||-.-+|..+|+++|+++|.|..++|-. -|++|||+|.+.++|.+|..+|||..| .++.|+|.|+.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVI----CGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCS----SSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeE----CCcEEEEEEccC
Confidence 4799999999999999999999999999888855 599999999999999999999999999 788999999864
No 111
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.06 E-value=5.2e-10 Score=101.10 Aligned_cols=80 Identities=18% Similarity=0.202 Sum_probs=68.9
Q ss_pred CCCCceE--eecccCCCCCHHHHHHHhcCcCCeeEEEecCccce-EEEEecCHHHHHHHHHHhcCCcCCCCCCC--CcEE
Q 004904 519 KSPTNSL--RIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTH-CYVTYSSVEEAIETRNALYNIQWPPNNGG--RPLV 593 (724)
Q Consensus 519 hPpT~aL--yI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSH-CYVtFsSVEeA~aARsALhG~vWP~en~g--R~Lr 593 (724)
.|++.+| ||+||..+.|...|+++|++||.|...||-.-+++ |||+|.+.++|.+|+.+|||..| .+ +.|+
T Consensus 20 ~~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i----~g~~~~l~ 95 (124)
T 2e5i_A 20 SGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADI----YAGCCTLK 95 (124)
T ss_dssp CCCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCC----BTTBSEEE
T ss_pred CCCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEe----cCCCeEEE
Confidence 3567775 68999999999999999999999999888432475 99999999999999999999998 44 5899
Q ss_pred EeecChhhh
Q 004904 594 AEFVDPQEV 602 (724)
Q Consensus 594 VDFv~pEeV 602 (724)
|+|+-+..+
T Consensus 96 V~~Ak~~~l 104 (124)
T 2e5i_A 96 IEYARPTRL 104 (124)
T ss_dssp EECCSCSCC
T ss_pred EEEecCCcc
Confidence 999976544
No 112
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.06 E-value=1.9e-10 Score=95.11 Aligned_cols=77 Identities=10% Similarity=0.103 Sum_probs=67.7
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeE--EEec----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTS--FWMD----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~--FWLD----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
..+..++|||+||-.-+|..+|+++|+++|.|.. +..+ +.|++|||+|.+.++|.+|..+|||..| .++.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~----~g~~ 86 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI----GSRK 86 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE----TTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee----CCeE
Confidence 3456789999999999999999999999999863 3333 4589999999999999999999999999 8899
Q ss_pred EEEeecC
Q 004904 592 LVAEFVD 598 (724)
Q Consensus 592 LrVDFv~ 598 (724)
|+|.|+.
T Consensus 87 l~V~~a~ 93 (98)
T 2cqp_A 87 VKLVLGS 93 (98)
T ss_dssp CEEEESS
T ss_pred EEEEEcC
Confidence 9999975
No 113
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.6e-10 Score=93.31 Aligned_cols=75 Identities=17% Similarity=0.046 Sum_probs=66.8
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
.+++++|||+||-.-+|..+|+++|+++|.|..++| ++.|++|||+|.+.++|.+|..+|||..| .++.|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~~ 77 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV----QAQMA 77 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC----CEESC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE----eeEEE
Confidence 357899999999999999999999999999998776 34488999999999999999999999999 78878
Q ss_pred EEeec
Q 004904 593 VAEFV 597 (724)
Q Consensus 593 rVDFv 597 (724)
++.+.
T Consensus 78 ~~~~~ 82 (85)
T 1x4e_A 78 KQSGP 82 (85)
T ss_dssp CSSCC
T ss_pred eecCC
Confidence 76653
No 114
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.05 E-value=6.4e-10 Score=97.58 Aligned_cols=78 Identities=17% Similarity=0.213 Sum_probs=68.5
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec-----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD-----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD-----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
..++.|||+||-..+|..+|+++|+.+|.|..++|- +.|++|||+|.+.++|.+|..+|||..+... .+++|+|
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g-~~~~l~V 171 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEG-CSSPMVV 171 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTT-CSSCCEE
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCC-CCCCeEE
Confidence 356789999999999999999999999999988872 3478999999999999999999999877554 3689999
Q ss_pred eecC
Q 004904 595 EFVD 598 (724)
Q Consensus 595 DFv~ 598 (724)
.|+.
T Consensus 172 ~~ad 175 (175)
T 3nmr_A 172 KFAD 175 (175)
T ss_dssp EECC
T ss_pred EecC
Confidence 9974
No 115
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.05 E-value=3e-10 Score=104.51 Aligned_cols=82 Identities=11% Similarity=0.041 Sum_probs=73.0
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcC--CeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTG--TFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetG--tI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
...++|||+||-.-.|..+|+++|+++| .|..++| ++-|++|||+|.+.++|.+|...|||..| .|+.
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~----~Gr~ 128 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL----NGEK 128 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE----TTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE----CCeE
Confidence 3568999999999999999999999999 8988777 34588999999999999999999999999 8999
Q ss_pred EEEeecChhhhhhh
Q 004904 592 LVAEFVDPQEVKMR 605 (724)
Q Consensus 592 LrVDFv~pEeV~~~ 605 (724)
|+|.|+.+..+..|
T Consensus 129 l~V~~a~~~~~~~~ 142 (156)
T 3n9u_C 129 VDVRPATRQNLSQF 142 (156)
T ss_dssp CEEEECCHHHHHHH
T ss_pred eEEEEcCCCcchhh
Confidence 99999999877665
No 116
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.05 E-value=4.2e-10 Score=100.30 Aligned_cols=77 Identities=14% Similarity=0.280 Sum_probs=70.6
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
.+.+..|||+||-.-+|..+|+++|+++|.|..+.| ++-|++|||.|.+.++|.+|..+|||..| .|+.|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l 142 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL----DGREL 142 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES----SSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE----CCeEE
Confidence 456899999999999999999999999999998887 34688999999999999999999999999 78999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|.|+.+
T Consensus 143 ~v~~a~~ 149 (158)
T 2kn4_A 143 RVQMARY 149 (158)
T ss_dssp EEEEECC
T ss_pred EEEECCC
Confidence 9999763
No 117
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=5.1e-10 Score=96.27 Aligned_cols=87 Identities=14% Similarity=0.172 Sum_probs=76.9
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCe-eEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTF-TSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI-~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
..+.++|||+||-.-.|..+|+++|+.+|.| ..++| .+-|++|||+|.+.++|.+|... ||..+ .++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~----~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKL----NGREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEE----TTEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCcc----CCeEE
Confidence 3467899999999999999999999999999 66666 45789999999999999999988 99999 89999
Q ss_pred EEeecChhhhhhhccCCC
Q 004904 593 VAEFVDPQEVKMRTEAPP 610 (724)
Q Consensus 593 rVDFv~pEeV~~~Ie~e~ 610 (724)
+|.++.+.++..+...++
T Consensus 87 ~v~~a~~~~~~~~~~~~~ 104 (114)
T 2cpy_A 87 FVHVVTLEDMREIEKNPP 104 (114)
T ss_dssp EEEEECHHHHHHHHHSCC
T ss_pred EEEECCHHHHHHHHhCcc
Confidence 999999999887765444
No 118
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.05 E-value=6.1e-10 Score=96.70 Aligned_cols=75 Identities=13% Similarity=0.268 Sum_probs=68.7
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec-----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD-----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD-----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
..+++|||+||-.-+|..+|+++|+++|.|..+.|- +.|++|||+|.+.++|.+|..+|||..| .++.|+|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~----~g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL----HGKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC----SSSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE----CCEEEEE
Confidence 457899999999999999999999999999987773 3569999999999999999999999999 7899999
Q ss_pred eecC
Q 004904 595 EFVD 598 (724)
Q Consensus 595 DFv~ 598 (724)
+|+.
T Consensus 81 ~~a~ 84 (116)
T 2fy1_A 81 EQAK 84 (116)
T ss_dssp EECC
T ss_pred EECC
Confidence 9975
No 119
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.05 E-value=1.8e-10 Score=94.81 Aligned_cols=78 Identities=12% Similarity=0.125 Sum_probs=69.4
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
..+++++|||+||-.-+|..+|+++|+++|.|...+. .+-|++|||+|.+.++|.+|..+|||..| .|+.|+|+|
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~ 87 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI----DGRSVSLYY 87 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCEEETTEEEEEEEEEESSHHHHHHHHHHTTEEEE----TTEEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEE
Confidence 3457899999999999999999999999999876632 45689999999999999999999999999 789999999
Q ss_pred cCh
Q 004904 597 VDP 599 (724)
Q Consensus 597 v~p 599 (724)
+.+
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 854
No 120
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.05 E-value=2.4e-10 Score=92.20 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=61.9
Q ss_pred CceEeecccCCCC------CHHHHHHHhcCcCCeeEEEec----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC-
Q 004904 522 TNSLRIDHFVRPF------TLRAVQELLGKTGTFTSFWMD----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR- 590 (724)
Q Consensus 522 T~aLyI~NLvRPF------T~~qLkElLsetGtI~~FWLD----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR- 590 (724)
+++|||+||-.-. |..+|+++|+++|.|..++|. +.|++|||+|.+.++|.+|..+|||..| .|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~----~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKL----DKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC----SSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCccc----CCce
Confidence 4789999997777 669999999999999999986 4589999999999999999999999999 777
Q ss_pred cEEE
Q 004904 591 PLVA 594 (724)
Q Consensus 591 ~LrV 594 (724)
.|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 7765
No 121
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.05 E-value=2.8e-10 Score=98.94 Aligned_cols=86 Identities=8% Similarity=0.089 Sum_probs=74.2
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeE-EEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTS-FWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~-FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
.+.....++|||+||-+-.|..+|+++|+.+|.|.. .+| ++-|++|||+|.+.++|.+|.. |||..+ .+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~----~g 93 (124)
T 1wel_A 19 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM----GN 93 (124)
T ss_dssp SSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS----TT
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE----CC
Confidence 344567789999999999999999999999999864 222 3558999999999999999999 999999 89
Q ss_pred CcEEEeecChhhhhhhc
Q 004904 590 RPLVAEFVDPQEVKMRT 606 (724)
Q Consensus 590 R~LrVDFv~pEeV~~~I 606 (724)
|.|+|.++.+.++...+
T Consensus 94 r~i~V~~a~~~~~~~~~ 110 (124)
T 1wel_A 94 RFIQVHPITKKGMLEKI 110 (124)
T ss_dssp SCBEEEEECHHHHHHHH
T ss_pred cEEEEEECCHHHHHHHH
Confidence 99999999998875443
No 122
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.05 E-value=2.5e-10 Score=101.79 Aligned_cols=82 Identities=24% Similarity=0.321 Sum_probs=72.4
Q ss_pred CCCCceEeecccCCCCC-----HHHHHHHhcCcCCeeEEEecC----------ccceEEEEecCHHHHHHHHHHhcCCcC
Q 004904 519 KSPTNSLRIDHFVRPFT-----LRAVQELLGKTGTFTSFWMDH----------IKTHCYVTYSSVEEAIETRNALYNIQW 583 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT-----~~qLkElLsetGtI~~FWLD~----------IKSHCYVtFsSVEeA~aARsALhG~vW 583 (724)
+++|++|+|.|++.|-. ..+|+++|++||.|.+++|-. .|++|||.|.+.++|.+|..+|||..+
T Consensus 17 ~~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 17 KQESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HHSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 46899999999998832 578999999999999998832 357999999999999999999999999
Q ss_pred CCCCCCCcEEEeecChhhhhh
Q 004904 584 PPNNGGRPLVAEFVDPQEVKM 604 (724)
Q Consensus 584 P~en~gR~LrVDFv~pEeV~~ 604 (724)
+||.|++.|.+.+.+..
T Consensus 97 ----~GR~i~v~~~~~~~f~~ 113 (118)
T 3ue2_A 97 ----AGRKVVAEVYDQERFDN 113 (118)
T ss_dssp ----TTEECEEEEECHHHHHT
T ss_pred ----CCcEEEEEEcChHhccc
Confidence 89999999999987753
No 123
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=3.2e-10 Score=97.13 Aligned_cols=76 Identities=22% Similarity=0.296 Sum_probs=68.9
Q ss_pred CCCceEeecccCCCCCHHHHH---HHhcCcCCeeEEEec---------CccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQ---ELLGKTGTFTSFWMD---------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNN 587 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLk---ElLsetGtI~~FWLD---------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en 587 (724)
...+.|||+||-.-+|..+|+ ++|+++|.|..++|. +.|++|||+|.+.++|.+|..+|||..+
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~---- 88 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV---- 88 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE----
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE----
Confidence 357899999999999999999 999999999988884 3347999999999999999999999999
Q ss_pred CCCcEEEeecCh
Q 004904 588 GGRPLVAEFVDP 599 (724)
Q Consensus 588 ~gR~LrVDFv~p 599 (724)
.++.|+|+|+.+
T Consensus 89 ~gr~l~V~~a~~ 100 (111)
T 2cpi_A 89 DGRTLKASLGTT 100 (111)
T ss_dssp TTEEEEEESCCC
T ss_pred CCEEEEEEeccc
Confidence 789999999864
No 124
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.04 E-value=4.4e-10 Score=90.89 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=66.3
Q ss_pred CceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEe
Q 004904 522 TNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAE 595 (724)
Q Consensus 522 T~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVD 595 (724)
.++|||+||-.-.|..+|+++|+++|.|..++| + +-|++|||+|.+.++|.+|. .|||..| .++.|+|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~----~g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF----RGRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE----TTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE----CCcEEEEE
Confidence 578999999999999999999999999998776 2 34889999999999999999 9999999 78999999
Q ss_pred ecCh
Q 004904 596 FVDP 599 (724)
Q Consensus 596 Fv~p 599 (724)
++.+
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 8753
No 125
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.04 E-value=2.3e-10 Score=102.22 Aligned_cols=82 Identities=16% Similarity=0.316 Sum_probs=73.0
Q ss_pred CCCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 004904 514 VPPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNN 587 (724)
Q Consensus 514 VpPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en 587 (724)
.+++..+.+++|||+||-.-+|..+|+++|+++|.|..++| .+.|++|||+|.+.++|.+|..+|||..|
T Consensus 39 ~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i---- 114 (135)
T 2lea_A 39 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL---- 114 (135)
T ss_dssp CSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCS----
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE----
Confidence 34555667899999999999999999999999999998888 24578999999999999999999999999
Q ss_pred CCCcEEEeecCh
Q 004904 588 GGRPLVAEFVDP 599 (724)
Q Consensus 588 ~gR~LrVDFv~p 599 (724)
.++.|+|.|+.+
T Consensus 115 ~g~~l~V~~a~~ 126 (135)
T 2lea_A 115 DGRELRVQMARY 126 (135)
T ss_dssp SSSCCEEEECCC
T ss_pred CCEEEEEEECCC
Confidence 789999999753
No 126
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.03 E-value=1.3e-10 Score=94.61 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=65.4
Q ss_pred ceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 523 NSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 523 ~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
++|||+||-.-.|..+|+++|+++|.|..++| ++-|++|||+|.+.+ |.+|..+|||..+ .|+.|+|.|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~----~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF----MGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC----SSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE----CCeEEEEEE
Confidence 57999999999999999999999999998888 345889999999999 9999999999999 789999999
Q ss_pred cChh
Q 004904 597 VDPQ 600 (724)
Q Consensus 597 v~pE 600 (724)
+.+.
T Consensus 77 a~~~ 80 (90)
T 2ki2_A 77 ANPK 80 (90)
T ss_dssp C---
T ss_pred cCCC
Confidence 8754
No 127
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.03 E-value=7.2e-10 Score=96.19 Aligned_cols=77 Identities=14% Similarity=0.234 Sum_probs=69.4
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
..++++.|||+||-..+|..+|+++|+++|.|..+.| + .-|++|||.|.+.++|.+|..+|||..| +|+.
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~ 158 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL----NGRP 158 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE----TTEE
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc----CCcE
Confidence 3456889999999999999999999999999987666 3 4478999999999999999999999999 7899
Q ss_pred EEEeecC
Q 004904 592 LVAEFVD 598 (724)
Q Consensus 592 LrVDFv~ 598 (724)
|+|.|+.
T Consensus 159 i~v~~a~ 165 (166)
T 3md3_A 159 LRINWAA 165 (166)
T ss_dssp CEEEESC
T ss_pred EEEEecC
Confidence 9999975
No 128
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.03 E-value=5.3e-10 Score=93.01 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=67.7
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe---cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM---DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL---D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
....+++++|||+||-.-+|..+|+++|+.++.|.-.+- .+-|++|||+|.+.++|.+|..+|||..| .++.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l 84 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI----DGNKV 84 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE----TTEEC
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE----CCeEE
Confidence 344578899999999999999999999998865443322 23478999999999999999999999999 78999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|.|+.+
T Consensus 85 ~V~~a~~ 91 (102)
T 2fc8_A 85 TLDWAKP 91 (102)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9999863
No 129
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.03 E-value=2.6e-10 Score=100.90 Aligned_cols=76 Identities=13% Similarity=0.301 Sum_probs=68.6
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeE--------E---EecCccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTS--------F---WMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNN 587 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~--------F---WLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en 587 (724)
..++++|||+||-.-+|..+|+++|+++|.|.. + .-++-|++|||+|.+.++|.+|..+|||..|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~---- 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL---- 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE----
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe----
Confidence 567899999999999999999999999998764 2 2357789999999999999999999999999
Q ss_pred CCCcEEEeecC
Q 004904 588 GGRPLVAEFVD 598 (724)
Q Consensus 588 ~gR~LrVDFv~ 598 (724)
.|+.|+|.|+.
T Consensus 118 ~g~~l~V~~a~ 128 (143)
T 3egn_A 118 FGKPMVVQFAR 128 (143)
T ss_dssp TTEECEEEECC
T ss_pred CCcEEEEEECC
Confidence 78999999985
No 130
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.02 E-value=4.4e-10 Score=90.53 Aligned_cols=71 Identities=17% Similarity=0.306 Sum_probs=66.8
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCc----C-------CeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKT----G-------TFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG 588 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLset----G-------tI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~ 588 (724)
.++++|||+||-.-.|..+|+++|+++ | .|.+.+|.+-|++|||+|.+.++|.+|. +|||..| .
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~----~ 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF----Q 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEE----T
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEE----C
Confidence 467899999999999999999999999 8 8999999888999999999999999999 9999999 7
Q ss_pred CCcEEEe
Q 004904 589 GRPLVAE 595 (724)
Q Consensus 589 gR~LrVD 595 (724)
|+.|+|.
T Consensus 79 g~~l~V~ 85 (87)
T 2hzc_A 79 GQSLKIR 85 (87)
T ss_dssp TEECEEE
T ss_pred CeEEEEe
Confidence 8888876
No 131
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.01 E-value=8.1e-10 Score=89.48 Aligned_cols=76 Identities=5% Similarity=0.129 Sum_probs=65.6
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
...+..++|||+||-.-.|..+|+++|+++|.|..++| ++-|++|||+|.+.++|.+|... +|..+ .|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~----~g~ 80 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRL----DGR 80 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEE----TTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEE----CCE
Confidence 34567899999999999999999999999999998777 33478999999999999999965 77777 788
Q ss_pred cEEEeec
Q 004904 591 PLVAEFV 597 (724)
Q Consensus 591 ~LrVDFv 597 (724)
.|+|.++
T Consensus 81 ~i~v~~A 87 (87)
T 3s7r_A 81 VIDPKKA 87 (87)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9998874
No 132
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.00 E-value=1e-09 Score=99.96 Aligned_cols=75 Identities=11% Similarity=0.172 Sum_probs=68.8
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEE
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLV 593 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~Lr 593 (724)
..+++|||+||-.-+|..+|+++|+++|.|..++|- +.|++|||.|.+.++|.+|..+|||..| .|+.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~----~g~~i~ 198 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDL----GGQYLR 198 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBC----SSSBCE
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEe----CCcEEE
Confidence 467899999999999999999999999999987773 3488999999999999999999999999 889999
Q ss_pred EeecC
Q 004904 594 AEFVD 598 (724)
Q Consensus 594 VDFv~ 598 (724)
|+|+.
T Consensus 199 V~~a~ 203 (216)
T 2qfj_A 199 VGKAV 203 (216)
T ss_dssp EEECS
T ss_pred EEEec
Confidence 99975
No 133
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.00 E-value=9.3e-10 Score=102.91 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=74.1
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
+..+++++|||+||-.-+|..+|+++|+++|.|..+.| ++-|++|||+|.+.++|.+|..+|||..+ .++.
T Consensus 83 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l----~Gr~ 158 (177)
T 2f3j_A 83 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL----DGRP 158 (177)
T ss_dssp SSCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC----SSSB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE----CCEE
Confidence 44567899999999999999999999999999998888 45689999999999999999999999999 7899
Q ss_pred EEEeecChhhh
Q 004904 592 LVAEFVDPQEV 602 (724)
Q Consensus 592 LrVDFv~pEeV 602 (724)
|+|.|+.....
T Consensus 159 l~V~~a~~~~~ 169 (177)
T 2f3j_A 159 MDIQLVASQID 169 (177)
T ss_dssp CEEEEESSGGG
T ss_pred EEEEEecCCCC
Confidence 99999876543
No 134
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.00 E-value=8.2e-10 Score=104.94 Aligned_cols=80 Identities=14% Similarity=0.208 Sum_probs=69.1
Q ss_pred ceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecChh
Q 004904 523 NSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVDPQ 600 (724)
Q Consensus 523 ~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~pE 600 (724)
..|||+||..+.|.+.|+++|++||.|..+|| ++-|++|||+|.+.++|.+|+.+|||..+-. +++.|+|+|+-+.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g--~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS--SCSCEEEEECSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC--CCcEEEEEEecCC
Confidence 34689999999999999999999999999998 4456799999999999999999999998822 2488999999876
Q ss_pred hhhh
Q 004904 601 EVKM 604 (724)
Q Consensus 601 eV~~ 604 (724)
.+..
T Consensus 125 ~l~v 128 (164)
T 1sjr_A 125 SLNV 128 (164)
T ss_dssp SCCC
T ss_pred cccc
Confidence 5443
No 135
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=7.2e-10 Score=91.68 Aligned_cols=74 Identities=20% Similarity=0.147 Sum_probs=66.3
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccc-eEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecC
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKT-HCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVD 598 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKS-HCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~ 598 (724)
..++.|||+||-.-.|..+|+++|+++|.|..+.+++-.+ +|||+|.+.++|.+|.. |||..+ .|+.|+|.+..
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~----~g~~l~V~~a~ 80 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSL----GGHRLRVRPRE 80 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEE----TTEECCCBCSC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEE----CCEEEEEEECC
Confidence 4568999999999999999999999999999987765433 99999999999999999 999999 88999987653
No 136
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.99 E-value=4.8e-10 Score=93.96 Aligned_cols=76 Identities=9% Similarity=0.092 Sum_probs=68.3
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
..+..++|||+||-.-+|..+|+++|+++|.|..++| + +-|++|||+|.+.++|.+|... ||..| .++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~----~g~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL----DGRN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE----TTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE----CCEE
Confidence 4567899999999999999999999999999998777 2 3468999999999999999999 99999 7899
Q ss_pred EEEeecC
Q 004904 592 LVAEFVD 598 (724)
Q Consensus 592 LrVDFv~ 598 (724)
|+|.|+.
T Consensus 87 l~V~~a~ 93 (105)
T 2dh8_A 87 IDPKPCT 93 (105)
T ss_dssp EBCCCSC
T ss_pred EEEEEcc
Confidence 9998875
No 137
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.99 E-value=7e-10 Score=95.50 Aligned_cols=73 Identities=12% Similarity=0.165 Sum_probs=67.0
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
.+++|||+||-.-+|..+|+++|+++|.|..++| ++-|++|||+|.+.++|.+|. .|||..| .|+.|+|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~----~g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF----RGRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE----TTEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE----CCeEEEE
Confidence 4689999999999999999999999999998777 344889999999999999999 8999999 7899999
Q ss_pred eecC
Q 004904 595 EFVD 598 (724)
Q Consensus 595 DFv~ 598 (724)
.|+.
T Consensus 110 ~~a~ 113 (124)
T 2jwn_A 110 LPKR 113 (124)
T ss_dssp EESS
T ss_pred EECC
Confidence 9975
No 138
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.99 E-value=1.4e-09 Score=96.53 Aligned_cols=82 Identities=23% Similarity=0.316 Sum_probs=72.7
Q ss_pred CCCceEeecccCCCCC------H----HHHHHHhcCcCCeeEEEecC--ccceEEEEecCHHHHHHHHHHhcCCcCCCCC
Q 004904 520 SPTNSLRIDHFVRPFT------L----RAVQELLGKTGTFTSFWMDH--IKTHCYVTYSSVEEAIETRNALYNIQWPPNN 587 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT------~----~qLkElLsetGtI~~FWLD~--IKSHCYVtFsSVEeA~aARsALhG~vWP~en 587 (724)
-+|+.|.|.|++.|-. . .+|+++|+++|.|.+++|++ .|+++||.|.+.++|.+|..+|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f---- 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWF---- 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEE----
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEE----
Confidence 4799999999999986 2 35677889999999999955 479999999999999999999999999
Q ss_pred CCCcEEEeecChhhhhhh
Q 004904 588 GGRPLVAEFVDPQEVKMR 605 (724)
Q Consensus 588 ~gR~LrVDFv~pEeV~~~ 605 (724)
+||.|++.|++.+.....
T Consensus 81 ~GR~i~v~~~~~~~y~~~ 98 (114)
T 3s6e_A 81 AGKMITAAYVPLPTYHNL 98 (114)
T ss_dssp TTEECEEEEECHHHHHHH
T ss_pred CCEEEEEEEEcHHHHHHh
Confidence 899999999999888654
No 139
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.98 E-value=8.9e-10 Score=103.11 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=67.6
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
.++..|+++|||+||-.-+|..+|+++|+++|.|.+++| ++-|++|||.|.+.++|.+|...|||..+ .+
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~----~g 84 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVI----KG 84 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TT
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhc----CC
Confidence 334567899999999999999999999999999998877 34578999999999999999999999999 78
Q ss_pred CcEEEeecCh
Q 004904 590 RPLVAEFVDP 599 (724)
Q Consensus 590 R~LrVDFv~p 599 (724)
+.|++.+...
T Consensus 85 ~~i~~~~~~~ 94 (213)
T 4f02_A 85 KPVRIMWSQR 94 (213)
T ss_dssp EECEEEECCC
T ss_pred cccccccccc
Confidence 8898887653
No 140
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.98 E-value=1.2e-09 Score=95.23 Aligned_cols=87 Identities=9% Similarity=0.064 Sum_probs=76.4
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCC---eeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGT---FTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGt---I~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
....++|||+||-+-.|..+|+++|+.+|. |..++| .+-|++|||+|.+.++|.+|.. |||..+ .+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~----~gr 88 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM----GHR 88 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE----TTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE----CCe
Confidence 346788999999999999999999999998 776666 3568899999999999999999 999999 899
Q ss_pred cEEEeecChhhhhhhccCCC
Q 004904 591 PLVAEFVDPQEVKMRTEAPP 610 (724)
Q Consensus 591 ~LrVDFv~pEeV~~~Ie~e~ 610 (724)
.|+|.++...++...+..-.
T Consensus 89 ~i~V~~a~~~~~~~~~~~~~ 108 (118)
T 2db1_A 89 YIEVFKSHRTEMDWVLKHSG 108 (118)
T ss_dssp EEEEEEECHHHHHHHHHTTS
T ss_pred EEEEEECCHHHHHHHHHHhC
Confidence 99999999999876665444
No 141
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.98 E-value=8.4e-10 Score=104.33 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=72.8
Q ss_pred CCCCCCCCceEeecccCC-CCCHHHHHHHhcCcCCeeEEEecCc-cceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 515 PPSPKSPTNSLRIDHFVR-PFTLRAVQELLGKTGTFTSFWMDHI-KTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 515 pPs~hPpT~aLyI~NLvR-PFT~~qLkElLsetGtI~~FWLD~I-KSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
++...+++++|||+||-. -+|..+|+++|+++|.|..++|-.- |++|||+|.+.++|.+|..+|+|..| .++.|
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~----~g~~l 102 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL----HGKPI 102 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBC----SSSBC
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeE----CCeEE
Confidence 344568899999999999 8999999999999999998777332 79999999999999999999999999 78999
Q ss_pred EEeecChh
Q 004904 593 VAEFVDPQ 600 (724)
Q Consensus 593 rVDFv~pE 600 (724)
+|.|+...
T Consensus 103 ~v~~a~~~ 110 (229)
T 2adc_A 103 RITLSKHQ 110 (229)
T ss_dssp EEECCSCC
T ss_pred EEEEecCc
Confidence 99998643
No 142
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.97 E-value=7.6e-10 Score=117.02 Aligned_cols=83 Identities=11% Similarity=0.121 Sum_probs=75.3
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEE
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLV 593 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~Lr 593 (724)
.++++|||+||-.-+|..+|+++|++||.|..++| | ..|+||||+|.+.++|.+|..+|||..| .++.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i----~gr~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI----DGRRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE----CCEEEE
Confidence 46789999999999999999999999999998777 3 3589999999999999999999999999 889999
Q ss_pred EeecChhhhhhhc
Q 004904 594 AEFVDPQEVKMRT 606 (724)
Q Consensus 594 VDFv~pEeV~~~I 606 (724)
|+|+.+..+..|.
T Consensus 176 V~~a~~~~~~~~~ 188 (437)
T 3pgw_S 176 VDVERGRTVKGWR 188 (437)
T ss_pred EEEeCCCCCCCCC
Confidence 9999987776664
No 143
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=1.3e-09 Score=93.87 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=68.0
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEe
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAE 595 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVD 595 (724)
..++|||+||-.-.|..+|+++|+++|.|.+++| ++-|++|||+|.+.++|.+|.. |+|..+ .|+.|.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~----~gr~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKY----KETDLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCC----TTTTCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEE----CCEEEEEE
Confidence 4689999999999999999999999999998888 4468999999999999999999 999999 88999999
Q ss_pred ecCh
Q 004904 596 FVDP 599 (724)
Q Consensus 596 Fv~p 599 (724)
+...
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 7665
No 144
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.96 E-value=1.1e-09 Score=113.97 Aligned_cols=79 Identities=20% Similarity=0.255 Sum_probs=71.5
Q ss_pred CCCCceEeecc--cCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC--cEEE
Q 004904 519 KSPTNSLRIDH--FVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR--PLVA 594 (724)
Q Consensus 519 hPpT~aLyI~N--LvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR--~LrV 594 (724)
.+||+.|||+| |..-.|..+|+++|++||.|.+++|..-|+||||+|++.++|.+|.++|||...... .|+ +|++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~-~g~~~~ly~ 93 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDD-LGQKITLYL 93 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECT-TSCEEECEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccc-cCCceEEEE
Confidence 46899999999 688899999999999999999999998899999999999999999999999988544 244 7899
Q ss_pred eecC
Q 004904 595 EFVD 598 (724)
Q Consensus 595 DFv~ 598 (724)
.|+.
T Consensus 94 ~~~~ 97 (345)
T 3tht_A 94 NFVE 97 (345)
T ss_dssp EECS
T ss_pred EEee
Confidence 9985
No 145
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.96 E-value=1.6e-09 Score=98.59 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=70.8
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcC-CeeEEEe-cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC-CCcEEEe
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTG-TFTSFWM-DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG-GRPLVAE 595 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetG-tI~~FWL-D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~-gR~LrVD 595 (724)
.+++++|||+||-.-+|..+|+++|+++| .|..++| ..-|++|||.|.+.++|.+|..+|||..+ + ++.|+|.
T Consensus 117 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~~g~~l~v~ 192 (198)
T 1qm9_A 117 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL----GENHHLRVS 192 (198)
T ss_dssp CCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCC----SSCCSCCEE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCcc----CCCCeEEEE
Confidence 46899999999999999999999999999 9998888 44589999999999999999999999999 5 8899999
Q ss_pred ecCh
Q 004904 596 FVDP 599 (724)
Q Consensus 596 Fv~p 599 (724)
|+.+
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9764
No 146
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=1.9e-09 Score=88.25 Aligned_cols=77 Identities=16% Similarity=0.133 Sum_probs=68.4
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
+.....++|||+||-.-.|..+|+++|+.+ .|..++| ++.|++|||+|.+.++|.+|.. |||..+ .++.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~----~gr~ 78 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYM----GGRY 78 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEE----TTEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCcee----CCcE
Confidence 345577899999999999999999999999 8887766 3457899999999999999999 999999 8899
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|.++.+
T Consensus 79 i~v~~a~~ 86 (91)
T 2dgw_A 79 IEVFREKS 86 (91)
T ss_dssp EEEEEESS
T ss_pred EEEEECCc
Confidence 99999864
No 147
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.95 E-value=2.4e-09 Score=89.46 Aligned_cols=76 Identities=14% Similarity=0.155 Sum_probs=66.2
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
...++++|||+||-.-+|..+|+++|+++|.|..++| ++-|++|||+|.+.++|.+|... |..+ .++.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~----~g~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMI----DGRW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEE----TTEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCee----CCeE
Confidence 3456789999999999999999999999999998777 34478999999999999999995 5567 7889
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|.|+.+
T Consensus 85 l~v~~a~~ 92 (103)
T 2cqg_A 85 CDCKLPNS 92 (103)
T ss_dssp EEEECCCT
T ss_pred EEEEecCC
Confidence 99999864
No 148
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.95 E-value=1.4e-09 Score=85.87 Aligned_cols=69 Identities=9% Similarity=0.114 Sum_probs=62.7
Q ss_pred eEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeec
Q 004904 524 SLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFV 597 (724)
Q Consensus 524 aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv 597 (724)
.|||+||-.-.|..+|+++|+++|.|..++| ++-|++|||+|.+.++|.+|.. |||..| .|+.|+|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~----~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI----NNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS----SSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE----CCEEEEEEeC
Confidence 4899999999999999999999999998887 3346899999999999999997 999999 8899999874
No 149
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.95 E-value=1.1e-09 Score=106.20 Aligned_cols=81 Identities=16% Similarity=0.064 Sum_probs=72.3
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcC--CeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTG--TFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetG--tI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
.+++|||+||-.-+|..+|+++|+++| .|..++| | +-|+||||+|.+.++|.+|..+|||..| .++.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~----~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL----HGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB----TTBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE----CCEEe
Confidence 567899999999999999999999999 8987776 4 4578999999999999999999999999 88999
Q ss_pred EEeecChhhhhhh
Q 004904 593 VAEFVDPQEVKMR 605 (724)
Q Consensus 593 rVDFv~pEeV~~~ 605 (724)
+|.|+.+..+..+
T Consensus 143 ~V~~a~~~~~~~~ 155 (229)
T 3q2s_C 143 VVTPVNKQFLSQF 155 (229)
T ss_dssp EEEECCHHHHHHH
T ss_pred EEEECCCCccchh
Confidence 9999999877644
No 150
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.94 E-value=2.2e-09 Score=89.41 Aligned_cols=76 Identities=12% Similarity=0.088 Sum_probs=67.0
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeE-----EEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTS-----FWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLV 593 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~-----FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~Lr 593 (724)
..+.++|||+||-.-.|..+|+++|+++|.|.. -...+-|++|||+|.+.++|.+|.. |||..| .++.|+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~----~g~~l~ 88 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV----FGNEIK 88 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB----TTBCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE----CCcEEE
Confidence 346789999999999999999999999997654 3446778999999999999999998 999999 789999
Q ss_pred EeecCh
Q 004904 594 AEFVDP 599 (724)
Q Consensus 594 VDFv~p 599 (724)
|.|+.+
T Consensus 89 V~~a~~ 94 (101)
T 1fj7_A 89 LEKPKG 94 (101)
T ss_dssp EECCSC
T ss_pred EEEcCC
Confidence 999764
No 151
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.94 E-value=4e-09 Score=92.22 Aligned_cols=76 Identities=24% Similarity=0.326 Sum_probs=66.4
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEE
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLV 593 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~Lr 593 (724)
..+++|||+||-..+|..+|+++|+++|.|..+.|- +.|++|||.|.+.++|.+|..+|||..+.- +++.|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~~~l~ 164 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG--GSQPLS 164 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT--CSSCCE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC--CCeEEE
Confidence 467899999999999999999999999999987772 236899999999999999999999998822 238899
Q ss_pred Eeec
Q 004904 594 AEFV 597 (724)
Q Consensus 594 VDFv 597 (724)
|.|+
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 152
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.1e-09 Score=93.44 Aligned_cols=76 Identities=18% Similarity=0.147 Sum_probs=68.3
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
....++|||+||-.-+|..+|+++|.++|.|..++| .+-|++|||+|.+.++|.+|..+ +|..| .++.|
T Consensus 24 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~----~g~~l 98 (116)
T 1x4b_A 24 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI----DGRVV 98 (116)
T ss_dssp HHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE----TTEEE
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE----CCEEE
Confidence 356689999999999999999999999999998877 33478999999999999999999 99999 88999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|.|+.+
T Consensus 99 ~V~~a~~ 105 (116)
T 1x4b_A 99 EPKRAVA 105 (116)
T ss_dssp EEECCSS
T ss_pred EEEECCC
Confidence 9999753
No 153
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.94 E-value=1.6e-09 Score=95.31 Aligned_cols=74 Identities=19% Similarity=0.249 Sum_probs=67.7
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
.++.|||+||-..+|..+|+++|+++|.|..++|- +-|++|||.|.+.++|.+|..+|||..+ .|+.|+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~V 168 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL----GDKKLLV 168 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEE----TTEECEE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEE----CCeEEEE
Confidence 48899999999999999999999999999987772 2378999999999999999999999999 7899999
Q ss_pred eecC
Q 004904 595 EFVD 598 (724)
Q Consensus 595 DFv~ 598 (724)
+|+.
T Consensus 169 ~~As 172 (172)
T 2g4b_A 169 QRAS 172 (172)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9974
No 154
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.93 E-value=2.5e-09 Score=102.59 Aligned_cols=77 Identities=14% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCc-cceEEEEecCHHHHHHHHHHhcCCcCCCCCC-CCcEEE
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHI-KTHCYVTYSSVEEAIETRNALYNIQWPPNNG-GRPLVA 594 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~I-KSHCYVtFsSVEeA~aARsALhG~vWP~en~-gR~LrV 594 (724)
...+++++|||+||-.-+|..+|+++|+++|.|..++|-.- |++|||.|.+.++|.+|..+|||..+ . |+.|+|
T Consensus 202 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~~g~~l~v 277 (282)
T 3pgw_A 202 SENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKI----TQNNAMKI 277 (282)
T ss_pred cCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCCcEEEEEeCCHHHHHHHHHHcCCcEe----CCCCEEEE
Confidence 34567899999999999999999999999999998877544 59999999999999999999999988 5 789999
Q ss_pred eec
Q 004904 595 EFV 597 (724)
Q Consensus 595 DFv 597 (724)
+|+
T Consensus 278 ~~a 280 (282)
T 3pgw_A 278 SFA 280 (282)
T ss_pred EEe
Confidence 996
No 155
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.93 E-value=2.9e-09 Score=102.08 Aligned_cols=80 Identities=9% Similarity=0.338 Sum_probs=71.9
Q ss_pred CCCCCceEeecccCCCCCHHHHH----HHhcCcCCeeEEEec---CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQ----ELLGKTGTFTSFWMD---HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLk----ElLsetGtI~~FWLD---~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
..+++++|||+||-.-+|..+|+ ++|+.+|.|..++|. +-|++|||+|.+.++|.+|..+|||..| .++
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~ 80 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPF----YDK 80 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCee----CCc
Confidence 45679999999999999999977 899999999998864 4789999999999999999999999999 789
Q ss_pred cEEEeecChhh
Q 004904 591 PLVAEFVDPQE 601 (724)
Q Consensus 591 ~LrVDFv~pEe 601 (724)
.|+|.|+....
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999986543
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.93 E-value=1.7e-09 Score=93.89 Aligned_cols=72 Identities=11% Similarity=0.143 Sum_probs=66.2
Q ss_pred ceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeec
Q 004904 523 NSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFV 597 (724)
Q Consensus 523 ~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv 597 (724)
++|||+||-.-.|..+|+++|+++|.|.+++| ++-|++|||+|.+.++|.+|...|||..+ .++.|++.|.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQI----ENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCcc----CCCeeEEEEc
Confidence 58999999999999999999999999998888 44578999999999999999999999999 7889999987
Q ss_pred C
Q 004904 598 D 598 (724)
Q Consensus 598 ~ 598 (724)
.
T Consensus 77 ~ 77 (166)
T 3md3_A 77 F 77 (166)
T ss_dssp C
T ss_pred C
Confidence 4
No 157
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.93 E-value=2.1e-09 Score=103.72 Aligned_cols=78 Identities=14% Similarity=0.184 Sum_probs=72.8
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeec
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFV 597 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv 597 (724)
.....++|||+||-.-+|..+|+++|+.+|.|..++|.+-|++|||.|.+.++|.+|...|||..+ .++.|+|.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i----~g~~l~v~~a 93 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTIL----KSRPLRIRFA 93 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEE----TTEECEEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEE----CCceeEeeec
Confidence 346778999999999999999999999999999999998899999999999999999999999999 7889999987
Q ss_pred Ch
Q 004904 598 DP 599 (724)
Q Consensus 598 ~p 599 (724)
.+
T Consensus 94 ~~ 95 (261)
T 3sde_A 94 TH 95 (261)
T ss_dssp CC
T ss_pred cc
Confidence 64
No 158
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.93 E-value=2.3e-09 Score=93.77 Aligned_cols=74 Identities=14% Similarity=0.207 Sum_probs=67.9
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecC------ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDH------IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~------IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
++++|||+||-.-+|..+|+++|+++|.|..++|-. -|++|||.|.+.++|.+|...|||..+ .++.|+|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~----~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITV----RNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE----TTEECEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEe----CCcEEEE
Confidence 578999999999999999999999999999888732 457999999999999999999999999 7889999
Q ss_pred eecC
Q 004904 595 EFVD 598 (724)
Q Consensus 595 DFv~ 598 (724)
.|+.
T Consensus 78 ~~~~ 81 (168)
T 1b7f_A 78 SYAR 81 (168)
T ss_dssp EECC
T ss_pred EecC
Confidence 9875
No 159
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.92 E-value=2.2e-09 Score=91.34 Aligned_cols=86 Identities=8% Similarity=0.085 Sum_probs=76.3
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCC---eeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGT---FTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGt---I~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
...++|||+||-.-.|..+|+++|+.+|. |..++| ++-|++|||+|.+.++|.+|.. |||..+ ++|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~----~gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYM----GQRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCS----SSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCccee----CCeE
Confidence 46788999999999999999999999888 777777 4568899999999999999999 999998 8899
Q ss_pred EEEeecChhhhhhhccCCC
Q 004904 592 LVAEFVDPQEVKMRTEAPP 610 (724)
Q Consensus 592 LrVDFv~pEeV~~~Ie~e~ 610 (724)
|+|.++.+.++...+..-.
T Consensus 84 i~V~~a~~~~~~~~~~~~~ 102 (107)
T 2lmi_A 84 VEVYEINNEDVDALMKSLQ 102 (107)
T ss_dssp CCCEECCHHHHHHHHHTTC
T ss_pred EEEEECCHHHHHHHHHhhc
Confidence 9999999999887665443
No 160
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.92 E-value=1.8e-09 Score=95.16 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=68.8
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcC-CeeEEEe--cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeec
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTG-TFTSFWM--DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFV 597 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetG-tI~~FWL--D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv 597 (724)
....|||+||-+-.|..+|+++|+++| .|...+| ++-|++|||+|.+.++|.+|...|+|..+ .|+.|+|+++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l----~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEF----RGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEE----TTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEE----CCeEEEEEEC
Confidence 457999999999999999999999999 8998888 46799999999999999999999999999 8999999987
Q ss_pred C
Q 004904 598 D 598 (724)
Q Consensus 598 ~ 598 (724)
.
T Consensus 103 ~ 103 (111)
T 2jvr_A 103 D 103 (111)
T ss_dssp C
T ss_pred C
Confidence 4
No 161
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.92 E-value=3.8e-09 Score=91.76 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=65.0
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC--c
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR--P 591 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR--~ 591 (724)
+..+.|||+||-..+|..+|+++|+++|.|..++| + .-|++|||.|.+.++|.+|..+|||..+ .|+ +
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~~~ 161 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP----SGATEP 161 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC----TTCSSC
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc----CCCccc
Confidence 35678999999999999999999999999987776 2 2478999999999999999999999988 443 5
Q ss_pred EEEeec
Q 004904 592 LVAEFV 597 (724)
Q Consensus 592 LrVDFv 597 (724)
|+|+|+
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 999885
No 162
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.92 E-value=2.7e-09 Score=92.64 Aligned_cols=74 Identities=15% Similarity=0.252 Sum_probs=67.4
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecC------ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDH------IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~------IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
++++|||+||-.-.|..+|+++|+++|.|.+++|-. -|++|||.|.+.++|.+|..+|||..+ .++.|+|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~----~g~~l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL----QTKTIKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECEE
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCcc----CCceEEE
Confidence 368999999999999999999999999999888732 358999999999999999999999999 7889999
Q ss_pred eecC
Q 004904 595 EFVD 598 (724)
Q Consensus 595 DFv~ 598 (724)
.|..
T Consensus 77 ~~~~ 80 (167)
T 1fxl_A 77 SYAR 80 (167)
T ss_dssp EECC
T ss_pred EecC
Confidence 9875
No 163
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.91 E-value=1.6e-09 Score=93.70 Aligned_cols=73 Identities=8% Similarity=0.074 Sum_probs=63.4
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeec
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFV 597 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv 597 (724)
...+.|||+||-.-.|..+|+++|.++|.|..++|-.- ++|||+|.+.++|.+|..+|||..| .++.|.+.|+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~----~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKF----RSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBC----CCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEE----CCcEeeeEEE
Confidence 45789999999999999999999999999999888433 9999999999999999999999999 7888555554
No 164
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.91 E-value=2.1e-09 Score=96.61 Aligned_cols=77 Identities=18% Similarity=0.240 Sum_probs=70.0
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
...+++|||+||-.-+|..+|+++|+++|.|..++|- .-|++|||.|.+.++|.+|..+|||..+ .|+.|
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l 186 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQL----GDKKL 186 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEE----TTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE----CCEEE
Confidence 4678999999999999999999999999999987773 2378999999999999999999999999 78999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|+|+.+
T Consensus 187 ~v~~a~~ 193 (198)
T 2yh0_A 187 LVQRASV 193 (198)
T ss_dssp EEEESCC
T ss_pred EEEECCC
Confidence 9999864
No 165
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=5.4e-09 Score=88.56 Aligned_cols=79 Identities=11% Similarity=0.103 Sum_probs=70.3
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeE-EEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEE
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTS-FWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLV 593 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~-FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~Lr 593 (724)
...+.|||+||-+-.|..+|+++|..+|.|.. +.| ++.|++|||+|.+.++|.+|... ||..+ ++|.|+
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~----~gr~i~ 87 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERI----GHRYIE 87 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCS----SSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccchh----CCcEEE
Confidence 46789999999999999999999999999986 655 45689999999999999999998 99998 889999
Q ss_pred EeecChhhhh
Q 004904 594 AEFVDPQEVK 603 (724)
Q Consensus 594 VDFv~pEeV~ 603 (724)
|.++.+.++.
T Consensus 88 v~~~~~~~~~ 97 (104)
T 1wg5_A 88 IFKSSRAEVR 97 (104)
T ss_dssp EEEECTTTSC
T ss_pred EEECCHHHHH
Confidence 9998876653
No 166
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.90 E-value=3.3e-09 Score=100.65 Aligned_cols=76 Identities=9% Similarity=-0.041 Sum_probs=70.3
Q ss_pred CCCceEeecccC-CCCCHHHHHHHhcCcCCeeEEEecC-ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeec
Q 004904 520 SPTNSLRIDHFV-RPFTLRAVQELLGKTGTFTSFWMDH-IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFV 597 (724)
Q Consensus 520 PpT~aLyI~NLv-RPFT~~qLkElLsetGtI~~FWLD~-IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv 597 (724)
+++++|||+||- .-+|...|+++|+++|.|.+.+|-+ -|++|||.|.+.++|.+|..+|||..+ .||.|+|.|+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~----~g~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFM----FGQKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEE----CCceEEEEEc
Confidence 678999999999 8999999999999999999998843 379999999999999999999999999 8899999998
Q ss_pred Ch
Q 004904 598 DP 599 (724)
Q Consensus 598 ~p 599 (724)
..
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 54
No 167
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.90 E-value=1.8e-09 Score=85.21 Aligned_cols=70 Identities=10% Similarity=0.133 Sum_probs=63.2
Q ss_pred ceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 523 NSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 523 ~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
++|||+||-.-.|..+|+++|+++|.|...+| ++-|++|||+|.+.++|.+|...|+ ..+ .|+.|+|.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~----~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HEL----DSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCC----SSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-Ccc----CCEEEEEEe
Confidence 47999999999999999999999999987777 3447899999999999999999999 888 788999987
Q ss_pred c
Q 004904 597 V 597 (724)
Q Consensus 597 v 597 (724)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 5
No 168
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.90 E-value=4.4e-09 Score=99.44 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=71.1
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcC-CeeEEEe-cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC-CCcEEEe
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTG-TFTSFWM-DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG-GRPLVAE 595 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetG-tI~~FWL-D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~-gR~LrVD 595 (724)
.+++++|||+||-.-+|..+|+++|+++| .|..+.| ..-|++|||.|.+.++|.+|..+|||..+ + ++.|+|.
T Consensus 148 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~----~~g~~l~v~ 223 (229)
T 2adc_A 148 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDL----GENHHLRVS 223 (229)
T ss_dssp CCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBS----SSSCBCEEE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCcc----CCCCeEEEE
Confidence 56789999999999999999999999999 9998888 55689999999999999999999999999 5 8899999
Q ss_pred ecCh
Q 004904 596 FVDP 599 (724)
Q Consensus 596 Fv~p 599 (724)
|+.+
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9864
No 169
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=4.7e-09 Score=93.12 Aligned_cols=75 Identities=15% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCCCCCce-EeecccCCCCCHHHHH----HHhcCcC-CeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 517 SPKSPTNS-LRIDHFVRPFTLRAVQ----ELLGKTG-TFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 517 s~hPpT~a-LyI~NLvRPFT~~qLk----ElLsetG-tI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
+..||+.+ |||+||-.-.+.++|+ ++|++|| .|.++ ..++|||+|.++++|.+|...|+|... .+|
T Consensus 3 ~~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tgG~AfV~F~~~esA~~A~~~l~G~~l----~gr 74 (96)
T 2diu_A 3 SGSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TGCSAILRFINQDSAERAQKRMENEDV----FGN 74 (96)
T ss_dssp SSCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CTTCEEEEESSHHHHHHHHHHHTTCCS----SSS
T ss_pred CCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ecCEEEEEECCHHHHHHHHHHhcCCcc----CCc
Confidence 34567888 9999999999998855 7889995 99877 349999999999999999999999998 899
Q ss_pred cEEEeecCh
Q 004904 591 PLVAEFVDP 599 (724)
Q Consensus 591 ~LrVDFv~p 599 (724)
+++|+|+..
T Consensus 75 ~i~v~~A~~ 83 (96)
T 2diu_A 75 RIIVSFTPK 83 (96)
T ss_dssp CCEEESSCC
T ss_pred eEEEEecCC
Confidence 999999874
No 170
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.42 E-value=1.6e-10 Score=98.94 Aligned_cols=77 Identities=16% Similarity=0.315 Sum_probs=69.2
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeE--------EEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCC
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTS--------FWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWP 584 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~--------FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP 584 (724)
.+++++|||+||-.-+|..+|+++|+++|.|.. ++| | +-|++|||+|.+.++|.+|..+|||..|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~- 82 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF- 82 (116)
Confidence 357889999999999999999999999999987 555 3 4578999999999999999999999999
Q ss_pred CCCCCCcEEEeecCh
Q 004904 585 PNNGGRPLVAEFVDP 599 (724)
Q Consensus 585 ~en~gR~LrVDFv~p 599 (724)
.++.|+|.|+.+
T Consensus 83 ---~g~~l~V~~a~~ 94 (116)
T 2lcw_A 83 ---SGNPIKVSFATR 94 (116)
Confidence 789999999864
No 171
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.89 E-value=3.1e-09 Score=91.18 Aligned_cols=75 Identities=12% Similarity=0.154 Sum_probs=65.6
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEE
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLV 593 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~Lr 593 (724)
...++|||+||-.-+|..+|+++|+++|.|..++| ++-|++|||+|.+.++|.+|...+ |..+ +|+.|+
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l----~g~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHEL----DSKTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEE----TTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcC----CCEEEE
Confidence 46789999999999999999999999999998888 345889999999999999999987 5777 789999
Q ss_pred EeecCh
Q 004904 594 AEFVDP 599 (724)
Q Consensus 594 VDFv~p 599 (724)
|.|+.+
T Consensus 98 V~~a~~ 103 (109)
T 2rs2_A 98 PKVAFP 103 (109)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999864
No 172
>1zrj_A E1B-55KDA-associated protein 5 isoform C; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=98.86 E-value=7e-10 Score=88.29 Aligned_cols=40 Identities=38% Similarity=0.514 Sum_probs=37.1
Q ss_pred CCCcccchhhHHHHHHHcccccCCchHHHHHHHHHHHHHH
Q 004904 11 RPIDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIE 50 (724)
Q Consensus 11 ~~~~~~kV~elk~el~~r~L~t~GlK~dL~~rL~~al~~e 50 (724)
..+.+|||.|||+||++|||.++|.|+|||+||++++..|
T Consensus 8 ~~~~klkV~eLK~eLk~RgL~~~G~Ka~Li~RL~~~~~~e 47 (50)
T 1zrj_A 8 MDVRRLKVNELREELQRRGLDTRGLKAELAERLQAALSGP 47 (50)
T ss_dssp CCGGGSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHCCC
T ss_pred CCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcc
Confidence 4689999999999999999999999999999999998653
No 173
>2kvu_A MKL/myocardin-like protein 1; SAP motif, DNA/RNA binding, structural genomics, northeast structural genomics consortium (NESG), PSI-2; NMR {Homo sapiens} PDB: 2kw9_A
Probab=98.85 E-value=2.2e-09 Score=91.79 Aligned_cols=49 Identities=41% Similarity=0.459 Sum_probs=41.7
Q ss_pred CCCCCCCCCCC----CCcccchhhHHHHHHHcccccCCchHHHHHHHHHHHHHH
Q 004904 1 MSSPYPILDNR----PIDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIE 50 (724)
Q Consensus 1 mss~ypil~n~----~~~~~kV~elk~el~~r~L~t~GlK~dL~~rL~~al~~e 50 (724)
||+.-. .++. .+.+|||.|||+||++|||.++|.|+|||+||++++..+
T Consensus 11 ~~~~~~-~~~g~l~~~l~klkVaeLK~eLk~RGL~~sG~KaeLIeRL~~~~~~~ 63 (75)
T 2kvu_A 11 MSTPLT-GKPGALPANLDDMKVAELKQELKLRSLPVSGTKTELIERLRAYQDQI 63 (75)
T ss_dssp CCSCSC-SSCSSCCTTTTTSCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHTT
T ss_pred cccCCC-CCCccchHHHHHCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcc
Confidence 554433 3665 789999999999999999999999999999999997654
No 174
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.85 E-value=5.3e-09 Score=95.11 Aligned_cols=84 Identities=10% Similarity=0.058 Sum_probs=74.8
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCC---eeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGT---FTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGt---I~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
....++|||+||-+-.|..+|+++|+.+|. |..++| ++-|++|||+|.+.++|.+|.. |||..+ ++|
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l----~gr 115 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESM----GHR 115 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEES----SSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEE----CCE
Confidence 346789999999999999999999999999 776666 3568899999999999999999 999999 899
Q ss_pred cEEEeecChhhhhhhcc
Q 004904 591 PLVAEFVDPQEVKMRTE 607 (724)
Q Consensus 591 ~LrVDFv~pEeV~~~Ie 607 (724)
.|+|.++.+.++...+.
T Consensus 116 ~i~V~~a~~~e~~~~~~ 132 (136)
T 2hgl_A 116 YIEVFKSHRTEMDWVLK 132 (136)
T ss_dssp EEEEEECCHHHHHHHHT
T ss_pred EEEEEECChHHHHHHHh
Confidence 99999999999876554
No 175
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.85 E-value=5.4e-09 Score=97.82 Aligned_cols=77 Identities=12% Similarity=0.171 Sum_probs=69.5
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
.+..|||+||-.-+|..+|+++|+.+|.|..+.| +.-|++|||.|.+.++|.+|..+|||..+ +|+.|+|+|
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~----~g~~i~V~~ 177 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL----NDRKVFVGR 177 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEE
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEE----CCEEEEEEE
Confidence 3467999999999999999999999999998777 33578999999999999999999999999 889999999
Q ss_pred cChhh
Q 004904 597 VDPQE 601 (724)
Q Consensus 597 v~pEe 601 (724)
+.+.+
T Consensus 178 a~~~~ 182 (213)
T 4f02_A 178 FKSRK 182 (213)
T ss_dssp CCCHH
T ss_pred cCCCc
Confidence 87654
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.85 E-value=4.5e-09 Score=95.60 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=68.4
Q ss_pred CceEeecccCC-CCCHHHHHHHhcCcCCeeEEEecCc-cceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecCh
Q 004904 522 TNSLRIDHFVR-PFTLRAVQELLGKTGTFTSFWMDHI-KTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVDP 599 (724)
Q Consensus 522 T~aLyI~NLvR-PFT~~qLkElLsetGtI~~FWLD~I-KSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~p 599 (724)
+++|||+||-. -+|..+|+++|+++|.|..++|-.- |++|||.|.+.++|.+|..+|||..| .|+.|+|.|+..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~----~g~~l~v~~a~~ 78 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKL----HGKPIRITLSKH 78 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCC----SSCCCEEEECCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCee----cCeEEEEEEecC
Confidence 58999999999 9999999999999999998877332 79999999999999999999999999 789999999875
Q ss_pred h
Q 004904 600 Q 600 (724)
Q Consensus 600 E 600 (724)
.
T Consensus 79 ~ 79 (198)
T 1qm9_A 79 Q 79 (198)
T ss_dssp C
T ss_pred C
Confidence 4
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.85 E-value=8.8e-09 Score=93.81 Aligned_cols=75 Identities=15% Similarity=0.184 Sum_probs=67.0
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEE
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLV 593 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~Lr 593 (724)
..+++|||+||-.-+|..+|+++|+++|.|..++| ++-|++|||.|.+.++|.+|...|||..| .++.|+
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~----~g~~l~ 101 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVML----GGRNIK 101 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCC----C-CCCE
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCee----CCeeEE
Confidence 35789999999999999999999999999998888 23689999999999999999999999999 788899
Q ss_pred EeecC
Q 004904 594 AEFVD 598 (724)
Q Consensus 594 VDFv~ 598 (724)
|.+..
T Consensus 102 v~~~~ 106 (216)
T 2qfj_A 102 VGRPS 106 (216)
T ss_dssp EECCS
T ss_pred EecCC
Confidence 97754
No 178
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.84 E-value=5.9e-09 Score=100.07 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=70.4
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecCh
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVDP 599 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~p 599 (724)
..+++|||+||-..+|..+|+++|+.+| |...+|++-|++|||.|.+.++|.+|...|||..| .++.|+|.|.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~----~g~~i~v~~~~~ 94 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRL----RERELSVQLQPT 94 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEE----TTEECEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCee----CCeEEEEEecCC
Confidence 4678999999999999999999999999 99999999999999999999999999999999999 788899998664
No 179
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.84 E-value=1e-08 Score=89.88 Aligned_cols=78 Identities=22% Similarity=0.361 Sum_probs=68.0
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec--------CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD--------HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD--------~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
.+++|||+||-.-+|..+|+++|+++|.|.+++|- +-|++|||.|.+.++|.+|..+|||..+-.. .++.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~-~~~~~ 80 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG-MHHPI 80 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT-CSSCC
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC-Cccce
Confidence 56899999999999999999999999999988772 5678999999999999999999999888555 46778
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
.+.+...
T Consensus 81 ~~~~~~~ 87 (175)
T 3nmr_A 81 QMKPADS 87 (175)
T ss_dssp EEEECGG
T ss_pred EEccccc
Confidence 8777543
No 180
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.84 E-value=5.6e-09 Score=91.52 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=67.2
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
+++.|||+||-..+|..+|+++|+++|.|..++| ++-|++|||.|.+.++|.+|.. |||..+ .|+.|+|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~----~g~~i~V 160 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF----KDRKIEI 160 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS----SSSCEEE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe----CCeEEEE
Confidence 4678999999999999999999999999998877 3457899999999999999998 899999 8899999
Q ss_pred eecCh
Q 004904 595 EFVDP 599 (724)
Q Consensus 595 DFv~p 599 (724)
.|+.+
T Consensus 161 ~~a~p 165 (167)
T 2cjk_A 161 KRAEP 165 (167)
T ss_dssp EECCC
T ss_pred eecCC
Confidence 99865
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.82 E-value=5e-09 Score=93.04 Aligned_cols=76 Identities=12% Similarity=0.138 Sum_probs=68.5
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecC
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVD 598 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~ 598 (724)
..++.|||+||-.-.|..+|+++|+++|.|..+.. .+-|++|||.|.+.++|.+|..+|||..+ .|+.|+|+|+.
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~i~v~~a~ 172 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI----DGRSVSLYYTG 172 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE----TTEEEEEEECS
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEE----CCeEEEEEecC
Confidence 36789999999999999999999999999987722 45689999999999999999999999999 78999999986
Q ss_pred h
Q 004904 599 P 599 (724)
Q Consensus 599 p 599 (724)
+
T Consensus 173 ~ 173 (175)
T 1fje_B 173 E 173 (175)
T ss_dssp S
T ss_pred C
Confidence 4
No 182
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=6.7e-09 Score=88.73 Aligned_cols=77 Identities=8% Similarity=0.069 Sum_probs=65.9
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
......++|||+||-+-.|..+|+++|..+|. +.++| .+.|++|||+|.+.++|.+|. .|||..+ .+|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~----~gr~ 83 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANM----QHRY 83 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCS----SSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeE----CCcE
Confidence 34456789999999999999999999999994 47766 355789999999999999999 5899988 7899
Q ss_pred EEEeecCh
Q 004904 592 LVAEFVDP 599 (724)
Q Consensus 592 LrVDFv~p 599 (724)
|+|..+.+
T Consensus 84 i~V~~~~~ 91 (102)
T 1wez_A 84 VELFLNST 91 (102)
T ss_dssp CEEEEECC
T ss_pred EEEEECCC
Confidence 99887653
No 183
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.82 E-value=3.5e-09 Score=83.33 Aligned_cols=69 Identities=12% Similarity=0.180 Sum_probs=62.2
Q ss_pred eEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeec
Q 004904 524 SLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFV 597 (724)
Q Consensus 524 aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv 597 (724)
+|||+||-.-.|..+|+++|+++|.|..++| ++-|++|||+|.+.++|.+|... +|..+ .|+.|+|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~----~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNV----GLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCB----TTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeE----CCEEEEEEEC
Confidence 5899999999999999999999999998888 45589999999999999999985 88888 7888988764
No 184
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.81 E-value=1.1e-08 Score=85.17 Aligned_cols=79 Identities=11% Similarity=0.215 Sum_probs=62.4
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecC-ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDH-IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~-IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
...++++.+|||+||-.-.|..+|+++|+++|.|.+++|-. -|++|||+|.+.++|. +|+|..+-- .++.|.|
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~~~~--~g~~v~v 78 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGEDLII--KGISVHI 78 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCEEEE--TTEEEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCCccc--CCEEEEE
Confidence 34568899999999999999999999999999999999843 5899999999999997 578876521 3778999
Q ss_pred eecChh
Q 004904 595 EFVDPQ 600 (724)
Q Consensus 595 DFv~pE 600 (724)
.++.+.
T Consensus 79 ~~a~~k 84 (89)
T 3d2w_A 79 SNAEPK 84 (89)
T ss_dssp EECC--
T ss_pred EEcCCC
Confidence 887653
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.80 E-value=7.5e-09 Score=99.72 Aligned_cols=77 Identities=9% Similarity=0.176 Sum_probs=69.8
Q ss_pred CCCCCceEeecccCCC-CCHHHHHHHhcCcCCeeEEEe-------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 518 PKSPTNSLRIDHFVRP-FTLRAVQELLGKTGTFTSFWM-------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRP-FT~~qLkElLsetGtI~~FWL-------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
..+.++.|||+||-.- +|..+|+++|+.+|.|..+.| ++-|++|||.|.+.++|.+|. +|||..+ .|
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~----~g 280 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLL----GN 280 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEE----TT
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEE----CC
Confidence 3567899999999999 999999999999999999888 455889999999999999999 9999999 78
Q ss_pred CcEEEeecCh
Q 004904 590 RPLVAEFVDP 599 (724)
Q Consensus 590 R~LrVDFv~p 599 (724)
+.|+|.|+.+
T Consensus 281 ~~i~V~~a~~ 290 (292)
T 2ghp_A 281 REISVSLADK 290 (292)
T ss_dssp EEEEEEECCC
T ss_pred cEEEEEEecC
Confidence 9999999864
No 186
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.79 E-value=1.2e-08 Score=91.52 Aligned_cols=78 Identities=6% Similarity=0.057 Sum_probs=66.6
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
..+.+++|||+||-.-+|..+|+++|+.+|.|..++| | +-|++|||.|.+.++|.+|... +|..+ +|+.
T Consensus 100 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~----~G~~ 174 (196)
T 1l3k_A 100 AHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTV----NGHN 174 (196)
T ss_dssp ---CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEE----TTEE
T ss_pred cCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEE----CCEE
Confidence 3467799999999999999999999999999998777 2 3578999999999999999987 79888 8899
Q ss_pred EEEeecChh
Q 004904 592 LVAEFVDPQ 600 (724)
Q Consensus 592 LrVDFv~pE 600 (724)
|.|.|+.+.
T Consensus 175 i~v~~a~~k 183 (196)
T 1l3k_A 175 CEVRKALSK 183 (196)
T ss_dssp CEEEECC--
T ss_pred EEEEecCCh
Confidence 999998654
No 187
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.78 E-value=1.1e-08 Score=91.84 Aligned_cols=79 Identities=23% Similarity=0.226 Sum_probs=68.5
Q ss_pred CCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--c----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 516 PSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--D----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 516 Ps~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
+.....+++|||+||-.-+|..+|+++|+++|.|..++| + .-|++|||.|.+.++|.+|... +|..+ .|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~----~g 81 (196)
T 1l3k_A 7 PKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKV----DG 81 (196)
T ss_dssp -CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEE----TT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEE----CC
Confidence 344567899999999999999999999999999998777 2 3478999999999999999987 88888 78
Q ss_pred CcEEEeecCh
Q 004904 590 RPLVAEFVDP 599 (724)
Q Consensus 590 R~LrVDFv~p 599 (724)
+.|.+.+...
T Consensus 82 ~~l~v~~~~~ 91 (196)
T 1l3k_A 82 RVVEPKRAVS 91 (196)
T ss_dssp EECEEEECCC
T ss_pred EEeeeecccC
Confidence 8999998753
No 188
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.77 E-value=1.4e-08 Score=101.16 Aligned_cols=82 Identities=11% Similarity=0.193 Sum_probs=71.5
Q ss_pred CCCCceEeecccCCCC---------CHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCC--CC-
Q 004904 519 KSPTNSLRIDHFVRPF---------TLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWP--PN- 586 (724)
Q Consensus 519 hPpT~aLyI~NLvRPF---------T~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP--~e- 586 (724)
.+.+++|||+||-.-+ |...|+++|+++|.|..+.|-.-|++|||+|.+.++|..|..+|||..+. ..
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 5678999999998877 79999999999999999999888999999999999999999999998872 21
Q ss_pred -----CCCCcEEEeecChh
Q 004904 587 -----NGGRPLVAEFVDPQ 600 (724)
Q Consensus 587 -----n~gR~LrVDFv~pE 600 (724)
..++.|.|.|+...
T Consensus 211 e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANED 229 (240)
T ss_dssp TGGGGGGSCCCEEEECC--
T ss_pred cccccCCCCEEEEEEccCC
Confidence 25789999998643
No 189
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.77 E-value=7.7e-09 Score=92.99 Aligned_cols=75 Identities=16% Similarity=0.257 Sum_probs=67.9
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCc----C-------CeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKT----G-------TFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG 588 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLset----G-------tI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~ 588 (724)
..+++|||+||-.-+|..+|+++|+++ | .|...++.+-|++|||.|.+.++|.+|. +|||..| .
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~g~afV~F~~~~~A~~Al-~l~g~~~----~ 76 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF----Q 76 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTTTEEEEEESCSHHHHHHG-GGTTEEE----T
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCCCEEEEEeCCHHHHHHHH-HhcCCEE----c
Confidence 367999999999999999999999998 6 6788999999999999999999999999 9999999 7
Q ss_pred CCcEEEeecCh
Q 004904 589 GRPLVAEFVDP 599 (724)
Q Consensus 589 gR~LrVDFv~p 599 (724)
|+.|+|.+...
T Consensus 77 g~~i~v~~~~~ 87 (198)
T 2yh0_A 77 GQSLKIRRPHD 87 (198)
T ss_dssp TEEEEEECCCC
T ss_pred CceEEEeCCCC
Confidence 89999987653
No 190
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.77 E-value=1.4e-08 Score=97.53 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=71.2
Q ss_pred CCCceEeecccCCCC-CHHHHHHHhcCcCCeeEEEec-----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEE
Q 004904 520 SPTNSLRIDHFVRPF-TLRAVQELLGKTGTFTSFWMD-----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLV 593 (724)
Q Consensus 520 PpT~aLyI~NLvRPF-T~~qLkElLsetGtI~~FWLD-----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~Lr 593 (724)
..++.|||+||-.-+ |..+|+++|+.+|.|..+.|- +.|++|||.|.+.++|.+|..+|||..+ +|+.|+
T Consensus 182 ~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~----~g~~l~ 257 (284)
T 3smz_A 182 LHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL----GGSHLR 257 (284)
T ss_dssp TSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE----TTEECE
T ss_pred CCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc----CCeEEE
Confidence 567899999999996 999999999999999887773 3589999999999999999999999999 789999
Q ss_pred EeecChhhh
Q 004904 594 AEFVDPQEV 602 (724)
Q Consensus 594 VDFv~pEeV 602 (724)
|.|+.+...
T Consensus 258 v~~a~~~~~ 266 (284)
T 3smz_A 258 VSFCAPGPP 266 (284)
T ss_dssp EEECCSSSC
T ss_pred EEEecCCCc
Confidence 999986543
No 191
>1h1j_S THO1 protein; SAP domain, DNA binding; NMR {Saccharomyces cerevisiae} SCOP: a.140.2.1 PDB: 2wqg_A
Probab=98.76 E-value=4.8e-09 Score=83.76 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=37.0
Q ss_pred CCcccchhhHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Q 004904 12 PIDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIER 51 (724)
Q Consensus 12 ~~~~~kV~elk~el~~r~L~t~GlK~dL~~rL~~al~~e~ 51 (724)
.+.+|+|.|||++|++|||.++|.|+|||+||+++...+.
T Consensus 4 ~~~kltV~eLK~~Lk~RGL~~~G~KadLieRL~~~~~~~~ 43 (51)
T 1h1j_S 4 DYSSLTVVQLKDLLTKRNLSVGGLKNELVQRLIKDDEESK 43 (51)
T ss_dssp SGGGCCHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHSC
T ss_pred hHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999999999999977654
No 192
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.74 E-value=3.7e-09 Score=88.15 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=67.1
Q ss_pred CCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec-----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 517 SPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD-----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 517 s~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD-----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
.....+++|||+||-.-.|..+|+++|+++|.|..++|- +-|++|||+|.+.++|.+|.. +|..+ +|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~----~g~~ 77 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINF----HGKK 77 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEE----TTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeE----CCEE
Confidence 334567899999999999999999999999999988883 367999999999999999999 88888 7888
Q ss_pred EEEeecC
Q 004904 592 LVAEFVD 598 (724)
Q Consensus 592 LrVDFv~ 598 (724)
|.|.+.-
T Consensus 78 l~v~~a~ 84 (102)
T 2xs2_A 78 LKLGPAI 84 (102)
T ss_dssp CEEEEEE
T ss_pred EEEEECC
Confidence 9988765
No 193
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.73 E-value=1.4e-08 Score=89.41 Aligned_cols=72 Identities=17% Similarity=0.277 Sum_probs=67.0
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCc----C-------CeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKT----G-------TFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLset----G-------tI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
++++|||+||-.-.|..+|+++|+++ | .|...++.+-|++|||.|.+.++|.+|. +|||..| .|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~----~g 77 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIF----QG 77 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTTTEEEEEESSHHHHHHHG-GGTTCEE----TT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCCCEEEEEeCCHHHHHHHH-HhCCcEe----cC
Confidence 57899999999999999999999998 7 7889999999999999999999999999 9999999 78
Q ss_pred CcEEEeec
Q 004904 590 RPLVAEFV 597 (724)
Q Consensus 590 R~LrVDFv 597 (724)
+.|++.+.
T Consensus 78 ~~i~v~~~ 85 (172)
T 2g4b_A 78 QSLKIRRP 85 (172)
T ss_dssp EECEEECC
T ss_pred ceeeecCC
Confidence 88998763
No 194
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=8.9e-09 Score=92.23 Aligned_cols=84 Identities=13% Similarity=0.082 Sum_probs=74.2
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCe----eEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTF----TSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI----~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
.....|||+||-+-.|..+|+++|+++|.| ..++| .+-|++|||+|.+.++|.+|... ||..+ .+|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l----~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLL----GKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEES----SSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCee----CCe
Confidence 467899999999999999999999999875 45665 35689999999999999999997 99988 789
Q ss_pred cEEEeecChhhhhhhccC
Q 004904 591 PLVAEFVDPQEVKMRTEA 608 (724)
Q Consensus 591 ~LrVDFv~pEeV~~~Ie~ 608 (724)
.|.|..+.+.++...+..
T Consensus 96 ~i~V~~a~~~e~~~~~~~ 113 (123)
T 2dha_A 96 YIELFRSTAAEVQQVLNR 113 (123)
T ss_dssp EECCEEECHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHh
Confidence 999999999999877654
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.71 E-value=2.3e-08 Score=94.92 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=69.9
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCe--eEEEe--c--CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTF--TSFWM--D--HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI--~~FWL--D--~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
.+++++|||+||-.-+|..+|+++|+++|.| ..+.| + .-|++|||.|.+.++|.+|..+|||..+-......++
T Consensus 120 ~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~ 199 (205)
T 3tyt_A 120 QHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPY 199 (205)
T ss_dssp CCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcce
Confidence 4678999999999999999999999999998 77776 3 3468999999999999999999999999777677789
Q ss_pred EEeec
Q 004904 593 VAEFV 597 (724)
Q Consensus 593 rVDFv 597 (724)
.|.|+
T Consensus 200 ~vk~~ 204 (205)
T 3tyt_A 200 TLKLC 204 (205)
T ss_dssp ECEEE
T ss_pred EEEec
Confidence 88874
No 196
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.71 E-value=8.4e-09 Score=89.13 Aligned_cols=51 Identities=25% Similarity=0.365 Sum_probs=47.5
Q ss_pred cCcCCeeEEEec-----CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecC
Q 004904 544 GKTGTFTSFWMD-----HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVD 598 (724)
Q Consensus 544 setGtI~~FWLD-----~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~ 598 (724)
+++|.|.+++|- +.|++|||.|.+.++|.+|..+|||..+ .||.|+|+|+|
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~----~Gr~i~v~~sp 104 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF----NGQPIHAELSP 104 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE----TTEECCEEECC
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE----CCEEEEEEEcC
Confidence 999999999994 3589999999999999999999999999 89999999986
No 197
>2do1_A Nuclear protein HCC-1; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=98.70 E-value=1.3e-08 Score=82.51 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=37.9
Q ss_pred CCCcccchhhHHHHHHHcccccCCchHHHHHHHHHHHHHH
Q 004904 11 RPIDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIE 50 (724)
Q Consensus 11 ~~~~~~kV~elk~el~~r~L~t~GlK~dL~~rL~~al~~e 50 (724)
..+.+|||.|||++|++|||.++|.|+|||+||++++..+
T Consensus 8 ~~l~klkV~eLK~~L~~rGL~~~G~KaeLieRL~~~l~~~ 47 (55)
T 2do1_A 8 VELHKLKLAELKQECLARGLETKGIKQDLIHRLQAYLEEH 47 (55)
T ss_dssp CCTTTSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHT
T ss_pred cCHHHCcHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Confidence 4588999999999999999999999999999999999876
No 198
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=3.6e-08 Score=86.34 Aligned_cols=77 Identities=6% Similarity=0.008 Sum_probs=68.5
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
+....|||+||-.-.|..+|+++|+.+ .|...+| ++-|++|||+|.+.++|.+|. .|||..+ ++|.|.|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~----~gr~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM----IQRYVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE----TTEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE----CCeEEEE
Confidence 345799999999999999999999999 7888777 456899999999999999999 7999999 8999999
Q ss_pred eecChhhh
Q 004904 595 EFVDPQEV 602 (724)
Q Consensus 595 DFv~pEeV 602 (724)
..+.+.+.
T Consensus 88 ~~a~~~~~ 95 (109)
T 2dnn_A 88 SPATERQW 95 (109)
T ss_dssp EECCHHHH
T ss_pred EECCccch
Confidence 88877653
No 199
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.66 E-value=3.4e-08 Score=95.17 Aligned_cols=80 Identities=5% Similarity=0.114 Sum_probs=64.9
Q ss_pred CCCCCCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecC----ccceEEEEecCHHHHHHHHHHhcCCcCCCCCCC
Q 004904 514 VPPSPKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDH----IKTHCYVTYSSVEEAIETRNALYNIQWPPNNGG 589 (724)
Q Consensus 514 VpPs~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~----IKSHCYVtFsSVEeA~aARsALhG~vWP~en~g 589 (724)
..+...+.+++|||+||-.-+|..+|+++|+.+|.|..++|-. -|++|||.|.+.++|.+|. .|||..+ .+
T Consensus 33 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~-~~~~~~~----~g 107 (292)
T 2ghp_A 33 EALTRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAI-TKTHKVV----GQ 107 (292)
T ss_dssp ---------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHH-TTTTCEE----TT
T ss_pred cccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHH-HhCCcEe----CC
Confidence 3555668899999999999999999999999999999888833 4799999999999999999 5999999 78
Q ss_pred CcEEEeecC
Q 004904 590 RPLVAEFVD 598 (724)
Q Consensus 590 R~LrVDFv~ 598 (724)
+.|++.+..
T Consensus 108 ~~i~v~~~~ 116 (292)
T 2ghp_A 108 NEIIVSHLT 116 (292)
T ss_dssp EECEEEECC
T ss_pred cEEEEEECC
Confidence 889988764
No 200
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=4.2e-08 Score=84.35 Aligned_cols=73 Identities=8% Similarity=0.079 Sum_probs=60.9
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
...+++|||+||-.-.|..+|+++|+++|.|...|+ .+.|++|||+|.+.++|.+|..+||+ + +|+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~----~G~ 78 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--E----DGK 78 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCCEECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--E----TTE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEEEEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--c----CCc
Confidence 346789999999999999999999999999985555 25689999999999999999999965 2 456
Q ss_pred cEEEeec
Q 004904 591 PLVAEFV 597 (724)
Q Consensus 591 ~LrVDFv 597 (724)
.|.+...
T Consensus 79 ~~~~~~~ 85 (114)
T 2dnl_A 79 LYLCVSS 85 (114)
T ss_dssp EEEEECC
T ss_pred EEEeccC
Confidence 6665543
No 201
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=2.2e-08 Score=81.63 Aligned_cols=74 Identities=14% Similarity=0.234 Sum_probs=61.7
Q ss_pred CCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEec-CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEeecC
Q 004904 520 SPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMD-HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEFVD 598 (724)
Q Consensus 520 PpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD-~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDFv~ 598 (724)
..+++|||+||-.-+|..+|+++|+++|.|..++|- .-|++|||+|.+.++|.+ |+|..+.- .++.|+|.|..
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~----~~~~~~~~--~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQS----LCGEDLII--KGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHH----TTTCEEEE--TTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHH----HhcCCcee--CCEEEEEEecC
Confidence 467999999999999999999999999999999884 358999999999999964 56664422 46778888865
Q ss_pred h
Q 004904 599 P 599 (724)
Q Consensus 599 p 599 (724)
+
T Consensus 77 ~ 77 (88)
T 1wf0_A 77 P 77 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 202
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.63 E-value=2.1e-08 Score=91.60 Aligned_cols=76 Identities=8% Similarity=0.070 Sum_probs=65.4
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
.....++|||+||-+-.|..+|+++|+++| |+.++| .+-|++|||+|.+.++|.+|. .|||..+ .+|.|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l----~gR~i 115 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM----QHRYI 115 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSS----SSCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEE----CCEEE
Confidence 445678999999999999999999999999 668887 356889999999999999999 8999998 78888
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
.|..+.+
T Consensus 116 ~V~~a~~ 122 (139)
T 2hgn_A 116 ELFLNST 122 (139)
T ss_dssp CCEECCC
T ss_pred EEEECCC
Confidence 8877654
No 203
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.63 E-value=3.9e-08 Score=87.25 Aligned_cols=77 Identities=12% Similarity=0.078 Sum_probs=67.3
Q ss_pred CCCCCceEeecccCCCCCHHHHHHHhcCcCCe-----eEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcE
Q 004904 518 PKSPTNSLRIDHFVRPFTLRAVQELLGKTGTF-----TSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPL 592 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRPFT~~qLkElLsetGtI-----~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~L 592 (724)
....+++|||+||-.-+|..+|+++|.++|.| .....++-|++|||.|.+.++|.+|. .|||..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~----~g~~l 83 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKV----FGNEI 83 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEE----TTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEe----CCeEE
Confidence 34578999999999999999999999988753 45566788999999999999999999 5999999 78999
Q ss_pred EEeecCh
Q 004904 593 VAEFVDP 599 (724)
Q Consensus 593 rVDFv~p 599 (724)
+|.++.+
T Consensus 84 ~v~~~~~ 90 (175)
T 1fje_B 84 KLEKPKG 90 (175)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9988764
No 204
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.63 E-value=6.1e-08 Score=87.56 Aligned_cols=79 Identities=14% Similarity=0.149 Sum_probs=69.1
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCee--EEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCc
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFT--SFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRP 591 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~--~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~ 591 (724)
....+.|||+||-+-.|..+|+++|+.+ .|+ .++| ++.|++|||+|.+.++|.+|... +|..+ .+|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l----~gR~ 112 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERI----GHRY 112 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCB----TTBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEE----CCEE
Confidence 3567889999999999999999999999 455 7776 45689999999999999999985 77777 7899
Q ss_pred EEEeecChhhhh
Q 004904 592 LVAEFVDPQEVK 603 (724)
Q Consensus 592 LrVDFv~pEeV~ 603 (724)
|+|.++.+.++.
T Consensus 113 I~V~~a~~~e~~ 124 (126)
T 2hgm_A 113 IEVFKSSQEEVR 124 (126)
T ss_dssp CCCEEECHHHHC
T ss_pred EEEEECCHHHhh
Confidence 999999988874
No 205
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.58 E-value=1e-07 Score=91.91 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=67.9
Q ss_pred CceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--c---CccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 522 TNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--D---HIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 522 T~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--D---~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
+++|||+||-.-+|..+|+++|+.+|.|..++| | +-|++|||.|.+.++|.+|..+|||..|-....+|+|+|+|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~ 175 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEP 175 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEE
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEee
Confidence 678999999999999999999999999998777 3 45889999999999999999999766554444588999999
Q ss_pred cCh
Q 004904 597 VDP 599 (724)
Q Consensus 597 v~p 599 (724)
+.+
T Consensus 176 ~~~ 178 (261)
T 3sde_A 176 MEQ 178 (261)
T ss_dssp CCC
T ss_pred ccc
Confidence 874
No 206
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.57 E-value=1.5e-07 Score=88.85 Aligned_cols=72 Identities=24% Similarity=0.312 Sum_probs=64.2
Q ss_pred CceEeecccCCCCCHHHHHHHhcCcCCeeEEEe-----cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 522 TNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM-----DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 522 T~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL-----D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
.++|||+||-.-.|..+|+++|+++|.|..++| .+.|++|||+|.+.++|.+|...+++ .| .|+.|+|.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~----~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KY----KETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EE----TTEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eE----CCEEEEEEE
Confidence 479999999999999999999999999999888 34789999999999999999987754 77 788999887
Q ss_pred cC
Q 004904 597 VD 598 (724)
Q Consensus 597 v~ 598 (724)
..
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 54
No 207
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.52 E-value=1.1e-07 Score=83.24 Aligned_cols=73 Identities=15% Similarity=0.192 Sum_probs=61.6
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
++++|||+||-.-+|..+|+++|+++|.|.+++| ++-|++|||.|.+.++|.+|... +..+ +|+.|.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~----~g~~i~v 75 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHIL----DGKVIDP 75 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEE----TTEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--cccc----CCeEccc
Confidence 5789999999999999999999999999999988 34578999999999999999996 3344 5666766
Q ss_pred eecCh
Q 004904 595 EFVDP 599 (724)
Q Consensus 595 DFv~p 599 (724)
.+..+
T Consensus 76 ~~~~~ 80 (167)
T 2cjk_A 76 KRAIP 80 (167)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 66543
No 208
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.44 E-value=8.7e-07 Score=77.09 Aligned_cols=74 Identities=15% Similarity=0.229 Sum_probs=61.6
Q ss_pred CCCCceEeecccCCC-------CCHHHHHHHhcCcCCeeEEEe-cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 519 KSPTNSLRIDHFVRP-------FTLRAVQELLGKTGTFTSFWM-DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 519 hPpT~aLyI~NLvRP-------FT~~qLkElLsetGtI~~FWL-D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
....+.|.|.-.+.+ .|..+|+++|++||.|..++| .+-|++|||+|.+.++|.+|...++|. .++
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~~------~g~ 80 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVGL------VDN 80 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCBC------SSS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCCC------CCC
Confidence 344667777665543 789999999999999999998 577899999999999999999998774 368
Q ss_pred cEEEeecC
Q 004904 591 PLVAEFVD 598 (724)
Q Consensus 591 ~LrVDFv~ 598 (724)
+|+|+|+.
T Consensus 81 ~l~V~~a~ 88 (100)
T 2d9o_A 81 PLKISWLE 88 (100)
T ss_dssp BCEEECSS
T ss_pred eEEEEEcc
Confidence 89999864
No 209
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.37 E-value=1.1e-06 Score=82.75 Aligned_cols=80 Identities=24% Similarity=0.307 Sum_probs=66.9
Q ss_pred CCceEeecccCCCC-----CHHHHHHHhcCcCCeeEEEec----------CccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 004904 521 PTNSLRIDHFVRPF-----TLRAVQELLGKTGTFTSFWMD----------HIKTHCYVTYSSVEEAIETRNALYNIQWPP 585 (724)
Q Consensus 521 pT~aLyI~NLvRPF-----T~~qLkElLsetGtI~~FWLD----------~IKSHCYVtFsSVEeA~aARsALhG~vWP~ 585 (724)
.+..+.+.|++-|- ....|++.|++||.|.++.|. +.|+++||.|.+.++|.+|..+|||..|
T Consensus 123 ~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~-- 200 (222)
T 3dxb_A 123 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF-- 200 (222)
T ss_dssp BCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS--
T ss_pred ccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE--
Confidence 34455555555443 346788999999999999883 7789999999999999999999999999
Q ss_pred CCCCCcEEEeecChhhhhh
Q 004904 586 NNGGRPLVAEFVDPQEVKM 604 (724)
Q Consensus 586 en~gR~LrVDFv~pEeV~~ 604 (724)
+||.|++.|.+.+.+..
T Consensus 201 --~gr~i~~~~~~~~~f~~ 217 (222)
T 3dxb_A 201 --AGRKVVAEVYDQERFDN 217 (222)
T ss_dssp --SSSBCEEEECCHHHHHT
T ss_pred --CCeEEEEEEcCHHHhhh
Confidence 89999999999988754
No 210
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.29 E-value=6e-07 Score=84.10 Aligned_cols=79 Identities=9% Similarity=-0.001 Sum_probs=66.1
Q ss_pred ceEeeccc----CCCCCHHHHHHHhcCcCCeeEEEe------cCccceEEEEecC-----HHH---HHHHHH--HhcCCc
Q 004904 523 NSLRIDHF----VRPFTLRAVQELLGKTGTFTSFWM------DHIKTHCYVTYSS-----VEE---AIETRN--ALYNIQ 582 (724)
Q Consensus 523 ~aLyI~NL----vRPFT~~qLkElLsetGtI~~FWL------D~IKSHCYVtFsS-----VEe---A~aARs--ALhG~v 582 (724)
..|||+|| .+-.+..+|+++|++||.|.+|-+ .+.|++|||+|.+ .++ |.+|.. +|+|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999987766 5669999999996 343 566655 689999
Q ss_pred CCCCCCCCcEEEeecChhhhhhh
Q 004904 583 WPPNNGGRPLVAEFVDPQEVKMR 605 (724)
Q Consensus 583 WP~en~gR~LrVDFv~pEeV~~~ 605 (724)
+ .|+.|+|.+-..-.+..+
T Consensus 83 I----~Gr~irV~ln~~g~~~~~ 101 (136)
T 2j8a_A 83 I----MGFKFEVILNKHSILNNI 101 (136)
T ss_dssp E----TTEEEEEEECCTTHHHHH
T ss_pred e----cCcEEEEEECcccHHHHH
Confidence 9 899999999887776443
No 211
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.10 E-value=1.8e-05 Score=72.10 Aligned_cols=81 Identities=10% Similarity=0.076 Sum_probs=71.6
Q ss_pred CCCCCceEeecccCCC-CCHHHHHHHhcCcCCeeEEEecCccceEEEEecC-HHHHHHHHHHhc--CCcCCCCCCCCcEE
Q 004904 518 PKSPTNSLRIDHFVRP-FTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSS-VEEAIETRNALY--NIQWPPNNGGRPLV 593 (724)
Q Consensus 518 ~hPpT~aLyI~NLvRP-FT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsS-VEeA~aARsALh--G~vWP~en~gR~Lr 593 (724)
..|+-+.|||+||.+- .+..+|+++|+++|.|..+||-.=...|||.|.+ .++|..+..+|+ |+.. .+..+.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i----~g~~~~ 89 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQL----RNKEVT 89 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCT----TSSSEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEE----eCcEEE
Confidence 3578899999999999 9999999999999999999998888899999999 889998888995 6777 667899
Q ss_pred EeecChhhh
Q 004904 594 AEFVDPQEV 602 (724)
Q Consensus 594 VDFv~pEeV 602 (724)
+..+.-++=
T Consensus 90 ~evL~GeeE 98 (121)
T 1owx_A 90 WEVLEGEVE 98 (121)
T ss_dssp EEECCHHHH
T ss_pred EEECCCHHH
Confidence 998887654
No 212
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.67 E-value=8.1e-05 Score=65.59 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=61.1
Q ss_pred CCCCCCceEeecccC----CC-CC---HHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCC
Q 004904 517 SPKSPTNSLRIDHFV----RP-FT---LRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNG 588 (724)
Q Consensus 517 s~hPpT~aLyI~NLv----RP-FT---~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~ 588 (724)
+..||-.++.|.-+- .. |. ..+|.++|+++|.|...++-. .+|||+|.+.+.|.+|.+ |+|... +
T Consensus 2 ~~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~--d~~fVtF~d~~sAlaAi~-mnG~~v----~ 74 (91)
T 2dnr_A 2 SSGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE--DKMWVTFLEGSSALNVLS-LNGKEL----L 74 (91)
T ss_dssp CCCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS--SSEEEEESSHHHHHHGGG-GTTCEE----T
T ss_pred CCCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec--CCEEEEECChHHHHHHHh-cCCeEe----C
Confidence 456777777776543 11 33 366888999999999887744 339999999999999998 999999 8
Q ss_pred CCcEEEeecChh
Q 004904 589 GRPLVAEFVDPQ 600 (724)
Q Consensus 589 gR~LrVDFv~pE 600 (724)
||.|+|.+.+++
T Consensus 75 Gr~LkV~lkt~d 86 (91)
T 2dnr_A 75 NRTITIALKSPS 86 (91)
T ss_dssp TEEEEEEECCCS
T ss_pred CeEEEEEeCCCC
Confidence 999999998864
No 213
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=97.62 E-value=3.5e-05 Score=70.54 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=36.6
Q ss_pred CcccchhhHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Q 004904 13 IDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIER 51 (724)
Q Consensus 13 ~~~~kV~elk~el~~r~L~t~GlK~dL~~rL~~al~~e~ 51 (724)
+++|||.|||+.|+.+||.++|.|+||+.||++.|....
T Consensus 37 l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~ 75 (114)
T 2rnn_A 37 MELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNAL 75 (114)
T ss_dssp HTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999987654
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.50 E-value=0.00017 Score=65.07 Aligned_cols=77 Identities=14% Similarity=0.173 Sum_probs=61.6
Q ss_pred CCceEeecccC----CCCCH-HHHHHHhcCcCCeeEE-EecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEE
Q 004904 521 PTNSLRIDHFV----RPFTL-RAVQELLGKTGTFTSF-WMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVA 594 (724)
Q Consensus 521 pT~aLyI~NLv----RPFT~-~qLkElLsetGtI~~F-WLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrV 594 (724)
..++|+|+||- ++-.+ .++++||..++.+..| ||-..| .+-|.|++.++|.+||-.|||..+ +|+.|++
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f----~g~~~r~ 78 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEF----LGKEMKL 78 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEE----TTEECEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhcccee----cCceeEE
Confidence 35789999982 22233 5678899999987765 566666 789999999999999999999999 8999999
Q ss_pred eecChhhh
Q 004904 595 EFVDPQEV 602 (724)
Q Consensus 595 DFv~pEeV 602 (724)
-|..+..+
T Consensus 79 YFgq~~~~ 86 (104)
T 1wey_A 79 YFAQTLHI 86 (104)
T ss_dssp ECCCCSSC
T ss_pred EecCCCCC
Confidence 99985443
No 215
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.22 E-value=0.00048 Score=61.22 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=60.3
Q ss_pred CCCCCCCCceEeecccCC-----C-CC---HHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCC
Q 004904 515 PPSPKSPTNSLRIDHFVR-----P-FT---LRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPP 585 (724)
Q Consensus 515 pPs~hPpT~aLyI~NLvR-----P-FT---~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~ 585 (724)
..+..||-.++.|..+-- . |. ..+|.++|+++|+|..++|..=+ |||+|.+-+.|.+|.+ |+|...
T Consensus 8 i~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v-- 82 (95)
T 1ufw_A 8 SSFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKV-- 82 (95)
T ss_dssp SCCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEE--
T ss_pred ceecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeee--
Confidence 456778888888876531 1 33 35588889999998866663333 9999999999999998 999999
Q ss_pred CCCCCcEEEeecC
Q 004904 586 NNGGRPLVAEFVD 598 (724)
Q Consensus 586 en~gR~LrVDFv~ 598 (724)
+||.|+|.+-+
T Consensus 83 --~Gr~L~V~~k~ 93 (95)
T 1ufw_A 83 --KGRAVKISGPS 93 (95)
T ss_dssp --TTEEEEEECCC
T ss_pred --CCeEEEEeccC
Confidence 89999998754
No 216
>1jjr_A KU70, thyroid autoantigen; DNA repair protein, protein-DNA interaction, solution structure, DNA binding protein; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=97.21 E-value=0.00015 Score=68.87 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=36.7
Q ss_pred CCCCcccchhhHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Q 004904 10 NRPIDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIER 51 (724)
Q Consensus 10 n~~~~~~kV~elk~el~~r~L~t~GlK~dL~~rL~~al~~e~ 51 (724)
+-.+.+|+|.+||+.|+.|||.+.|-|+|||+||++.|....
T Consensus 58 ~g~L~kltV~eLK~~l~~~gL~~~GkKadLI~Ri~~~l~~Kv 99 (151)
T 1jjr_A 58 KGTLGKFTVPMLKEACRAYGLKSGLKKQELLEALTKHFQDKV 99 (151)
T ss_dssp HTCTTSSCHHHHHHHHHHHTCCCCSSSHHHHHHHHHTTCC--
T ss_pred cCcHHhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhhc
Confidence 446789999999999999999999999999999999976543
No 217
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.15 Score=47.16 Aligned_cols=75 Identities=7% Similarity=0.049 Sum_probs=66.7
Q ss_pred CceEeecccCCCCCHHHHHHHhcCc-----CCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCCcEEEee
Q 004904 522 TNSLRIDHFVRPFTLRAVQELLGKT-----GTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGRPLVAEF 596 (724)
Q Consensus 522 T~aLyI~NLvRPFT~~qLkElLset-----GtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR~LrVDF 596 (724)
-++|-|-||.-=.+-.++++++..+ |.|+...|-.=..=++|.|.++..|-+|.=+|+|..+ .||.|++
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef----~gr~Lr~-- 94 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQF----QGKVIRS-- 94 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEE----TTEEEEE--
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeee----cCeEEEe--
Confidence 5677888999999999999999988 9999999988899999999999999999999999999 7888875
Q ss_pred cChhhh
Q 004904 597 VDPQEV 602 (724)
Q Consensus 597 v~pEeV 602 (724)
.+..++
T Consensus 95 gTv~eL 100 (117)
T 2l9w_A 95 GTINDM 100 (117)
T ss_dssp ECHHHH
T ss_pred cCHHHH
Confidence 444444
No 218
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.58 E-value=0.23 Score=44.78 Aligned_cols=56 Identities=20% Similarity=0.358 Sum_probs=50.6
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhc
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALY 579 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALh 579 (724)
....||| +|---+.-.+|.++|+.+|.|.==||| =|||||.|.+-+.|..|.++|.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~Wid--DTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID--DTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEE--TTEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 4567888 999999999999999999988888998 5999999999999999988874
No 219
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.26 E-value=0.21 Score=43.67 Aligned_cols=78 Identities=22% Similarity=0.332 Sum_probs=62.1
Q ss_pred eEeecccCCCCCHHHHHHHhcCcCCeeEEEe--------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC-cEEE
Q 004904 524 SLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR-PLVA 594 (724)
Q Consensus 524 aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR-~LrV 594 (724)
-|-|++|---+|..++.+.|+..+.+..|+. ..+=|.||+.|.+.+.+..-++.++|..|=+..+.. ...|
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~V 82 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIV 82 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEE
Confidence 4678999999999999999998877664443 234488999999999999999999999997775433 3457
Q ss_pred eecChhh
Q 004904 595 EFVDPQE 601 (724)
Q Consensus 595 DFv~pEe 601 (724)
+|++=.+
T Consensus 83 E~AP~qk 89 (91)
T 1uw4_A 83 EFAPFQK 89 (91)
T ss_dssp EECSSCC
T ss_pred EEcCCCc
Confidence 8876443
No 220
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=90.80 E-value=0.24 Score=44.69 Aligned_cols=54 Identities=20% Similarity=0.376 Sum_probs=49.0
Q ss_pred ceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhc
Q 004904 523 NSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALY 579 (724)
Q Consensus 523 ~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALh 579 (724)
..|+| +|---+.-.+|..+|+.+|.|.==||| =|||||.|.+-+.|..|.++|.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~Wid--DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWID--DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEE--TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 46888 999999999999999999988888998 5999999999999999988874
No 221
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=84.52 E-value=0.38 Score=52.50 Aligned_cols=62 Identities=10% Similarity=0.090 Sum_probs=47.0
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccc-eEEEEecCHHHHHHHHHHhcCCcCCCC
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKT-HCYVTYSSVEEAIETRNALYNIQWPPN 586 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKS-HCYVtFsSVEeA~aARsALhG~vWP~e 586 (724)
+.++++|. +.+....++|.++|+++|.|.+..|+..|+ |+.|.|++.++|.++ |.....|-.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~---~~~~~~p~~ 114 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSL---QNGTHTPXX 114 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHH---HSSCCCCCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHH---HhccCCCcc
Confidence 56899997 799999999999999999999999988875 788999999888754 455667665
No 222
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=81.10 E-value=1.2 Score=44.85 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=37.0
Q ss_pred CCCcccchhhHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Q 004904 11 RPIDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIER 51 (724)
Q Consensus 11 ~~~~~~kV~elk~el~~r~L~t~GlK~dL~~rL~~al~~e~ 51 (724)
-.|..|.+.||+..|+..||.++|.|.-|.+||......+.
T Consensus 24 ~~~~~m~~~~l~~~l~~~~l~~~g~~~~l~~~l~~~~~~~~ 64 (299)
T 1zbh_A 24 GCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQK 64 (299)
T ss_dssp HHHHSCCHHHHHHHHHHTTCCCCSCHHHHHHHHHHHHHHHH
T ss_pred chhhhccHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhh
Confidence 34668999999999999999999999999999999988764
No 223
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=80.03 E-value=1.2 Score=40.73 Aligned_cols=36 Identities=33% Similarity=0.477 Sum_probs=32.4
Q ss_pred cchhhHHHHHHHcccccCCchHHHHHHHHHHHHHHH
Q 004904 16 WKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIER 51 (724)
Q Consensus 16 ~kV~elk~el~~r~L~t~GlK~dL~~rL~~al~~e~ 51 (724)
+.+.|||+-|.+.||...|-|.|||.|+-..|..|.
T Consensus 20 frikelkdvl~~lgl~kqgkKqdL~Dril~llsd~q 55 (110)
T 2rno_A 20 FRIKELKDILNQLGLPKQGKKQDLIDRVLALLTDEQ 55 (110)
T ss_dssp SCHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHSSC
T ss_pred hhHHHHHHHHHHhCCcccCccHHHHHHHHHHcCHHH
Confidence 468899999999999999999999999998887554
No 224
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=77.81 E-value=4.1 Score=36.31 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=61.0
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcCcCCeeEEEe--------cCccceEEEEecCHHHHHHHHHHhcCCcCCCCCCCC
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWM--------DHIKTHCYVTYSSVEEAIETRNALYNIQWPPNNGGR 590 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWL--------D~IKSHCYVtFsSVEeA~aARsALhG~vWP~en~gR 590 (724)
|.-+--|-|++|---+|..+|.+.|+..=.+..|.. ..+=|.||+.|.+.++...-++..+|..|=+.++..
T Consensus 6 ~~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~ 85 (97)
T 2l08_A 6 HHHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLE 85 (97)
T ss_dssp CCCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCE
T ss_pred cccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCE
Confidence 455667889999999999999999986333322211 333488999999999999999999999998886544
Q ss_pred -cEEEeecC
Q 004904 591 -PLVAEFVD 598 (724)
Q Consensus 591 -~LrVDFv~ 598 (724)
+-.|+|+|
T Consensus 86 ~~a~VE~AP 94 (97)
T 2l08_A 86 YPAVVEFAP 94 (97)
T ss_dssp EEEEEEECC
T ss_pred eeeEEEecC
Confidence 44577776
No 225
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=76.80 E-value=1 Score=39.75 Aligned_cols=39 Identities=8% Similarity=-0.053 Sum_probs=34.7
Q ss_pred CccceEEEEecCHHHHHHHHHHh-cCCcCCCCCCCCcEEEeecCh
Q 004904 556 HIKTHCYVTYSSVEEAIETRNAL-YNIQWPPNNGGRPLVAEFVDP 599 (724)
Q Consensus 556 ~IKSHCYVtFsSVEeA~aARsAL-hG~vWP~en~gR~LrVDFv~p 599 (724)
.+|++++|.|.+.++|.+|..+| ||..+ .| .+++++...
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~----~G-~~~~~~a~~ 50 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGV----DG-EWTYDDATK 50 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTC----CC-EEEEETTTT
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCC----CC-ceecccccC
Confidence 66899999999999999999999 99988 67 899998763
No 226
>2out_A MU-like prophage flumu protein GP35, protein HI1507 in MU-like prophage flumu region...; structural genomics, hypothetical protein; NMR {Haemophilus influenzae} SCOP: a.140.3.2 d.344.1.1
Probab=70.88 E-value=1.2 Score=41.85 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=31.3
Q ss_pred CCCcccchhhHHHHHHHcccc--cCCchHHHHHHHHHHH
Q 004904 11 RPIDQWKVTELKEELKRRKLK--SSGKKDDLIRLLDQAI 47 (724)
Q Consensus 11 ~~~~~~kV~elk~el~~r~L~--t~GlK~dL~~rL~~al 47 (724)
.+++.|+|.|||+.|+++|+. ++--|+||+.-|.+|.
T Consensus 87 ~~l~~lTV~ELKa~Lde~gIe~~ssakKaELiaLL~~a~ 125 (131)
T 2out_A 87 TDLNTFTVEQLKAQLTERGITFKQSATKAELIALFAPAD 125 (131)
T ss_dssp CSSTTCCSHHHHHHHHHHTCCCSSSCCSHHHHHHCCSCC
T ss_pred CccccccHHHHHHHHHHcCCcccccCCHHHHHHHHHHhh
Confidence 467889999999999999985 6678999998887653
No 227
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=69.43 E-value=8.6 Score=41.93 Aligned_cols=54 Identities=20% Similarity=0.378 Sum_probs=48.4
Q ss_pred ceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhc
Q 004904 523 NSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALY 579 (724)
Q Consensus 523 ~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALh 579 (724)
..|+++ |.......+|.++|+.+|.|.=.|||. |.|||.|.+.+.|..+..++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v~V~widd--t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNIQISWIDD--TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCCEEEECSS--SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCEEEEEEcC--CeEEEEECCHHHHHHHHHHHH
Confidence 578887 888888999999999999888789986 889999999999999999884
No 228
>2w51_A Protein arMet; MANF, CDNF, saposin, secreted, ER stress, phosphoprotein, neurotrophic factor, sialic acid, glycoprotein, growth factor, hormone; 2.80A {Homo sapiens} PDB: 2kvd_A 2rqy_A 2kve_A
Probab=69.00 E-value=1.2 Score=42.89 Aligned_cols=40 Identities=28% Similarity=0.399 Sum_probs=31.0
Q ss_pred CCCCCCcccchhhHHHHHHHcccccCCc--hHHHHHHHHHHH
Q 004904 8 LDNRPIDQWKVTELKEELKRRKLKSSGK--KDDLIRLLDQAI 47 (724)
Q Consensus 8 l~n~~~~~~kV~elk~el~~r~L~t~Gl--K~dL~~rL~~al 47 (724)
|++..+++|+|.+||.-|..+|+.-+|- |.|.|+|+.+..
T Consensus 103 l~~~Dl~KlrVkeLK~IL~d~g~~C~GC~EK~DfV~ri~el~ 144 (158)
T 2w51_A 103 LSTVDLKKLRVKELKKILDDWGETCKGCAEKSDYIRKINELM 144 (158)
T ss_dssp CCCSSCCTTHHHHHHHHTTCCCTTCSSCHHHHTTC-------
T ss_pred cccCChhhccHHHHHHHHHHcCCCCCchhhhHHHHHHHHHhc
Confidence 6678999999999999999999999997 899999998865
No 229
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=66.61 E-value=2.9 Score=36.87 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=23.4
Q ss_pred CccceEEEEecCHHHHHHHHHHhcCC
Q 004904 556 HIKTHCYVTYSSVEEAIETRNALYNI 581 (724)
Q Consensus 556 ~IKSHCYVtFsSVEeA~aARsALhG~ 581 (724)
..|++|||.|.+.++|.+|...++|.
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhccc
Confidence 46899999999999999999998864
No 230
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=58.99 E-value=15 Score=33.83 Aligned_cols=61 Identities=10% Similarity=0.053 Sum_probs=48.2
Q ss_pred CCceEeecccCCCCCHHHHHHHhcCcCCeeEEEecCccceEEEEecCHHHHHHHHHHhcCCcC
Q 004904 521 PTNSLRIDHFVRPFTLRAVQELLGKTGTFTSFWMDHIKTHCYVTYSSVEEAIETRNALYNIQW 583 (724)
Q Consensus 521 pT~aLyI~NLvRPFT~~qLkElLsetGtI~~FWLD~IKSHCYVtFsSVEeA~aARsALhG~vW 583 (724)
..+.+.|=+|.. -....|-.+|.++|+|+..-...-...-+|+|.+-.+|.+|... ||.+.
T Consensus 23 ~~~wVtVFGFp~-~~~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii 83 (119)
T 1wwh_A 23 DDTWVTVFGFPQ-ASASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIF 83 (119)
T ss_dssp GGGEEEEECCCG-GGHHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEE
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEe
Confidence 345555555543 34677778889999999777777789999999999999999986 88888
No 231
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.21 E-value=38 Score=30.70 Aligned_cols=57 Identities=9% Similarity=0.010 Sum_probs=48.0
Q ss_pred CCCCceEeecccCCCCCHHHHHHHhcC-----cCCeeEEEecCccceEEEEecCHHHHHHHHHH
Q 004904 519 KSPTNSLRIDHFVRPFTLRAVQELLGK-----TGTFTSFWMDHIKTHCYVTYSSVEEAIETRNA 577 (724)
Q Consensus 519 hPpT~aLyI~NLvRPFT~~qLkElLse-----tGtI~~FWLD~IKSHCYVtFsSVEeA~aARsA 577 (724)
.-.-.+++|.||-.....+-|.-+|.. -|.|.+++... ..++|+|...+.|.++...
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC
Confidence 345678999999998888888888854 36799988877 9999999999999998876
No 232
>1v66_A Protein inhibitor of activated STAT protein 1; four helix bundle, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.140.2.1
Probab=49.47 E-value=16 Score=30.88 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=33.4
Q ss_pred CcccchhhHHHHHHHcccccCCchHHHHHHHHHHHHHH
Q 004904 13 IDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIE 50 (724)
Q Consensus 13 ~~~~kV~elk~el~~r~L~t~GlK~dL~~rL~~al~~e 50 (724)
|.++.|+||.--|-..|-...|.|-||+.|--.-|...
T Consensus 11 v~sfRVsELq~LLg~~gr~KsGrK~eL~~RaL~LL~~~ 48 (65)
T 1v66_A 11 VMSLRVSELQVLLGYAGRNKHGRKHELLTKALHLLKAG 48 (65)
T ss_dssp HTTCCHHHHHHHHHTTCCCCCSCHHHHHHHHHHHHHTC
T ss_pred HHHHhHHHHHHHHHHcCCCCcCcHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999977666543
No 233
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=49.16 E-value=3.6 Score=42.85 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=0.0
Q ss_pred CCCCCCCcccchhhHHHHHHHcccccCCchHHHHHHHHHHHHHH
Q 004904 7 ILDNRPIDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIRIE 50 (724)
Q Consensus 7 il~n~~~~~~kV~elk~el~~r~L~t~GlK~dL~~rL~~al~~e 50 (724)
..-|--|..|.+.||+..|+..+|.++|.+.-|.+||......+
T Consensus 70 ~~~~~~i~~~~~~~l~~~l~~~~l~~~G~~~vl~~~l~~~y~~~ 113 (349)
T 1zbu_A 70 AITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYKKQ 113 (349)
T ss_dssp --------------------------------------------
T ss_pred HHhhcccccCCHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhhc
Confidence 34466788999999999999999999999999999999877654
No 234
>2do5_A Splicing factor 3B subunit 2; SAP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.79 E-value=28 Score=28.51 Aligned_cols=36 Identities=22% Similarity=0.448 Sum_probs=32.1
Q ss_pred CcccchhhHHHHHHHcccccCCchHHHHHHHHHHHH
Q 004904 13 IDQWKVTELKEELKRRKLKSSGKKDDLIRLLDQAIR 48 (724)
Q Consensus 13 ~~~~kV~elk~el~~r~L~t~GlK~dL~~rL~~al~ 48 (724)
+--|--.||..-|..-|--..|-.++||+||+.-..
T Consensus 8 ygaW~~~ELQaKLaE~GAPi~g~REElvdRLk~Y~~ 43 (58)
T 2do5_A 8 YGAWAAQELQAKLAEIGAPIQGNREELVERLQSYTR 43 (58)
T ss_dssp SCSSCHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHhCCcccccHHHHHHHHHHHhh
Confidence 457999999999999999999999999999987643
No 235
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=30.99 E-value=37 Score=31.02 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=27.9
Q ss_pred CcccchhhHHHHHHHcccccCCc--hHHHHHHHH
Q 004904 13 IDQWKVTELKEELKRRKLKSSGK--KDDLIRLLD 44 (724)
Q Consensus 13 ~~~~kV~elk~el~~r~L~t~Gl--K~dL~~rL~ 44 (724)
+.++||..|+.-|..+++.+.|+ |+|||+-+.
T Consensus 76 l~~lkvkdL~~yL~~~~I~~~~c~EKedLv~lvl 109 (120)
T 1y02_A 76 LMKMKVKDLRDYLSLHDISTEMCREKEELVLLVL 109 (120)
T ss_dssp HHTSCHHHHHHHHHHTTCCCTTCCSHHHHHHHHH
T ss_pred HhcccHHHHHHHHHhCCCCcccceeHHHHHHHHH
Confidence 45789999999999999999998 789998543
No 236
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=26.73 E-value=43 Score=34.00 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=30.2
Q ss_pred ccchhhHHHHHHHcccccCCchHHHHHHHHHH
Q 004904 15 QWKVTELKEELKRRKLKSSGKKDDLIRLLDQA 46 (724)
Q Consensus 15 ~~kV~elk~el~~r~L~t~GlK~dL~~rL~~a 46 (724)
.+|++.|+.-....|+.+.|-|++|++||.+.
T Consensus 3 ~lk~~~L~~l~~~~G~~~sg~K~~l~~rl~~~ 34 (258)
T 1kcf_A 3 TVKLSFLQHICKLTGLSRSGRKDELLRRIVDS 34 (258)
T ss_dssp CCCHHHHHHHHHHTTCCCCSCTTHHHHHHHHC
T ss_pred CCcHHHHHHHHHHhCCCCCCcHHHHHHHHHhc
Confidence 68999999999999999999999999999875
No 237
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=20.99 E-value=67 Score=29.44 Aligned_cols=37 Identities=19% Similarity=0.154 Sum_probs=30.4
Q ss_pred CCcccchhhHHHHHHHcccccCC--chHHHHHHHHHHHH
Q 004904 12 PIDQWKVTELKEELKRRKLKSSG--KKDDLIRLLDQAIR 48 (724)
Q Consensus 12 ~~~~~kV~elk~el~~r~L~t~G--lK~dL~~rL~~al~ 48 (724)
.+++|++.+|++-.+..|+.... -|.+||.++-.++.
T Consensus 5 eLk~~~~~eL~eiAk~LgI~~~s~mrKqeLI~~IL~~~~ 43 (130)
T 1a62_A 5 ELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHA 43 (130)
T ss_dssp HHHTSCHHHHHHHHHTTTCCCCTTSCHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHcCCCCccccCHHHHHHHHHHHHH
Confidence 35789999999999999998765 78898887766543
No 238
>2p1w_A 27.5 kDa virulence protein; beta sheet- alpha helix, lyase; 2.30A {Salmonella enteritidis}
Probab=20.26 E-value=24 Score=36.10 Aligned_cols=21 Identities=29% Similarity=0.841 Sum_probs=16.7
Q ss_pred CCCCCCcccchhhHHHHHHHc
Q 004904 8 LDNRPIDQWKVTELKEELKRR 28 (724)
Q Consensus 8 l~n~~~~~~kV~elk~el~~r 28 (724)
-++-||++||||++.---+.-
T Consensus 136 SeDSPvDKWKVTDM~rv~~qs 156 (250)
T 2p1w_A 136 SEDSPVDKWKVTDMEKVVQQA 156 (250)
T ss_dssp CTTCSCCEEEEECHHHHHHTT
T ss_pred CCCCCcceeeecccccCcchh
Confidence 367899999999998766543
Done!