BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004905
(724 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPQ9|FPA_ARATH Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA
PE=2 SV=2
Length = 901
Score = 489 bits (1258), Expect = e-137, Method: Compositional matrix adjust.
Identities = 344/776 (44%), Positives = 427/776 (55%), Gaps = 154/776 (19%)
Query: 2 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61
DEQ+LHNAMILFGEIER+KSYPSRN++ VEFRS +EAR+ KEGLQGRLFN+PRI IM+S+
Sbjct: 221 DEQILHNAMILFGEIERVKSYPSRNFALVEFRSAEEARQCKEGLQGRLFNNPRIKIMYSN 280
Query: 62 SELAPGKDYPGSYSGTKGPRSEMFFGDQIRPSQLDMLGPNQSMQPNNFAGHLQPADIRGP 121
EL P +D YSG K R++MF D PS F I G
Sbjct: 281 DELPPEQDDTSFYSGMKRSRTDMFNND---PS---------------FVSSPHSTGIPGS 322
Query: 122 SMPMRSIGAHGGHETLLSGPDFKDFHSMQDPNAKNLDPNWRRPS-------PSP---GIR 171
P+R G +E +G ++ D +PNWRRPS PSP GI
Sbjct: 323 MRPLR-----GTNERSYNGAEYND--------VVGKEPNWRRPSANGTGILPSPTGPGIL 369
Query: 172 TSPTQGIRQPLNHAPGSWDVYDANQFQRDSKRLRVDGSMPIDDATFPSRKIDDHGLVLDQ 231
SP QG R+P+ P SW+ YD Q R+SKR R DGS+ F +D+ +
Sbjct: 370 PSPAQGTRRPMRSNPDSWEGYDPAQLVRESKRTRRDGSV----DGFTPMGVDE------R 419
Query: 232 SYGLGSITGGPASGAFVNVQGRNRLSPVASKVTAGGFGRNPIDSDFIWRGIIAKGGTPVC 291
S+G GS+ P R P DSD IWRG+IAKGGTPVC
Sbjct: 420 SFGRGSVAARPI--------------------------RGPPDSDHIWRGMIAKGGTPVC 453
Query: 292 RARCVPFGKGIESELPEVVNCSARTGLDMLAKHYAEAIGFDIVFFLPDSEDDFASYTEFL 351
ARCVP GKGIE++LPEVVNCSART L+MLAKHYA AIG +IVFF+PD E+DFASYTEFL
Sbjct: 454 CARCVPMGKGIETKLPEVVNCSARTDLNMLAKHYAVAIGCEIVFFVPDREEDFASYTEFL 513
Query: 352 RYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKVLKVVGPERLYGVVLKLPQQAM------- 404
RYL SK+RAGVAK DDGTTLFLVPPSDFL+ VL+V ERLYGVVLKLP A+
Sbjct: 514 RYLSSKDRAGVAKLDDGTTLFLVPPSDFLTDVLQVTRQERLYGVVLKLPPPAVPVTASYR 573
Query: 405 -----VPPQTVDKQNIPPPHAEYGLTRPKEEHVLPVDYNRFSHDDSKVQSKMHFPHASEP 459
P +D+ P +A + L P+E ++ R + + SK P SEP
Sbjct: 574 QESQSNPLHYMDQARDSPANASHSLYPPRENYI------RGAPEHLTAASK---PSVSEP 624
Query: 460 LIAHSSSMDYGSNNAAAISQAGVKLTPELIATLTSLIPATKSAEVAPGS----SSARPLL 515
L NNAA QAGV LTPEL+ATL S++PAT S AP S S ++
Sbjct: 625 LRI--------PNNAAP--QAGVSLTPELLATLASILPAT-SQPAAPESHQPMSGPSTVV 673
Query: 516 AEPHV--------------------------QSIEQLGNHYNPQAQ--SLTHHYASMSST 547
+ H QS +Q GN Y P Q Y S+
Sbjct: 674 STAHQSNGLYNGEAPSQAWKRGPQTVHDASNQSFQQYGNQYTPAGQLPPPPSRYPPASNN 733
Query: 548 PSHSAQMLLGNNQLQESTASLSQQGMVYSRPLPNFSIAPQAAPV-AVSPPVHQQYQFAAP 606
P++++ M+ GN Q Q + ++ Q + + P N+S+ Q + VS P+ QQYQ A
Sbjct: 734 PNYTSGMVHGNMQYQSQSVNMPQLSPLPNMPHNNYSMYTQGSSNHPVSQPMVQQYQPEA- 792
Query: 607 SNSQKGYGMMQGTEASTLYGSSVFQQPNNPTAVSNQVNLSQPQNVMTVSVDKVNLEHPNH 666
S + YG + + + +G + Q N +N SQ Q M DK NLE N
Sbjct: 793 SMPNQNYGPIPSYQQANFHGVTTNQAQN--------LNPSQFQAAMQPPADKANLEPQNQ 844
Query: 667 VQQLQSVLSGAGQGTSDGEVDKNQRYQSTLQFAANLLLQIQQQQQTNS---PAGRG 719
+LQ ++SG GQGT+DGEVDKNQRYQSTLQFAANLLLQIQQ+QQ S PAG+G
Sbjct: 845 ALRLQPMISGDGQGTTDGEVDKNQRYQSTLQFAANLLLQIQQKQQQQSSGTPAGQG 900
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 13 FGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPG 72
+G+I+RI Y SR ++F+ +R V+EA AKE LQG N +I I ++ P K
Sbjct: 41 YGDIDRITVYSSRGFAFIYYRHVEEAVAAKEALQGANLNGSQIKIEYAR----PAKPCKS 96
Query: 73 SYSGTKGP 80
+ G GP
Sbjct: 97 LWVGGIGP 104
Score = 34.7 bits (78), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 6 LHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65
L FG+IE + R +F+++ +D+A +AK + G+ + + F S+
Sbjct: 111 LEEEFSKFGKIEDFRFLRERKTAFIDYYEMDDALQAKS-MNGKPMGGSFLRVDFLRSQAP 169
Query: 66 PGKDYPGSYSGTKG--------PRSEMFFGDQIRPSQLDMLG 99
+ + GSY G P S F ++PS++ +G
Sbjct: 170 KKEQWAGSYDNRNGNMNHKPQYPHSYEDFKGDVQPSKVLWIG 211
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 40.0 bits (92), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 3 EQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61
E++L A FG++ER+K ++Y+F+ F D A +A E + G+ I I+F+
Sbjct: 351 EEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 407
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 39.3 bits (90), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 1 MDEQMLHNAMILFGEIERIK----SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
+D + L++ FG+I K Y SR Y FV F + + A RA + + G L ND ++
Sbjct: 110 IDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVF 169
Query: 57 I 57
+
Sbjct: 170 V 170
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 38.9 bits (89), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 3 EQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61
E++L + FG++ER+K ++Y+F+ F D A +A E + G+ I I+F+
Sbjct: 351 EEILEKSFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 407
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 38.5 bits (88), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 3 EQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61
E++L + FG++ER+K ++Y+F+ F D A +A E + G+ I I+F+
Sbjct: 261 EEILEKSFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 317
>sp|Q92576|PHF3_HUMAN PHD finger protein 3 OS=Homo sapiens GN=PHF3 PE=1 SV=3
Length = 2039
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 276 DFIWRGIIAKGGTPVCRARCVPFG---KGIESELPEVVNCSAR----TGLDMLAKHYAEA 328
+FIW+G I + P + + +LP+ + R T D + K A
Sbjct: 1206 NFIWKGFINMPSVAKFVTKAYPVSGSPEYLTEDLPDSIQVGGRISPQTVWDYVEKIKASG 1265
Query: 329 IG-FDIVFFLPDSEDDFASYTEFLRYLGSKNRAGVA--KFDDGTTLFLVP 375
+V F P +E+D SYT Y S+ R GVA ++L+P
Sbjct: 1266 TKEICVVRFTPVTEEDQISYTLLFAYFSSRKRYGVAANNMKQVKDMYLIP 1315
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 37.7 bits (86), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 1 MDEQMLHNAMILFGEIERIK-----SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 55
+D + LH+ FG I K S S+ Y FV++ + + A++A E L G L ND ++
Sbjct: 135 IDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194
Query: 56 TI 57
+
Sbjct: 195 YV 196
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 37.0 bits (84), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 55
+D + LH+ FG+I K ++ Y FV F SV+ A A E + G L ND ++
Sbjct: 179 IDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238
Query: 56 TI 57
+
Sbjct: 239 YV 240
>sp|Q9P6M8|PABPX_SCHPO mRNA export factor crp79 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=crp79 PE=2 SV=2
Length = 710
Score = 37.0 bits (84), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 13 FGEI--ERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60
FG I + YP S+ Y FV FR ++ A RAK+ L G + RI + F+
Sbjct: 407 FGSILSSMLACYPNSGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFA 460
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 36.2 bits (82), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60
+ EQ++ FG+I I+ +P + YSFV F S + A A + G + +
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Query: 61 SSEL 64
L
Sbjct: 285 KETL 288
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 36.2 bits (82), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60
+ EQ++ FG+I I+ +P + YSFV F S + A A + G + +
Sbjct: 225 LTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWG 284
Query: 61 SSEL 64
L
Sbjct: 285 KETL 288
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 36.2 bits (82), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 1 MDEQMLHNAMILFGEIERIK----SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
+D + L++ FG I K + SR Y FV F + + A RA + + G L ND ++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVF 169
Query: 57 I 57
+
Sbjct: 170 V 170
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis
thaliana GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 36.2 bits (82), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 12 LFGEIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60
LF R++ R+Y+FVEF +A A+ L GR F+ RIT+ FS
Sbjct: 30 LFSRYGRVRDVDMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFS 79
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 35.8 bits (81), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 1 MDEQMLHNAMILFGEIERIK----SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
+D + L++ FG I K + SR Y FV F + + A RA + + G L ND ++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVF 169
Query: 57 I 57
+
Sbjct: 170 V 170
>sp|Q8JUX5|POLS_CHIKS Structural polyprotein OS=Chikungunya virus (strain S27-African
prototype) PE=1 SV=3
Length = 1248
Score = 35.8 bits (81), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
Query: 489 IATLTSLIPATKSAEVAPGSSSARPLLA--EPHVQSIEQLGNHYNPQAQSLTHHYASMSS 546
+A +T ++P ++ V G + LL P + S +G N Q + +TH + +
Sbjct: 586 LANVTCMVPKARNPTVTYGKNQVIMLLYPDHPTLLSYRSMGEEPNYQEEWVTHKKEVVLT 645
Query: 547 TPSHSAQMLLGNNQLQESTASLSQQGMVYSRP----LPNFSIAPQAAPVAVS 594
P+ ++ GNN+ + LS G + P L + + P V VS
Sbjct: 646 VPTEGLEVTWGNNEPYKYWPQLSANGTAHGHPHEIILYYYELYPTMTVVVVS 697
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 1 MDEQMLHNAMILFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
+D + L++ FG I K S+ Y FV F + + A RA E + G L ND ++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 57 I 57
+
Sbjct: 170 V 170
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 1 MDEQMLHNAMILFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
+D + L++ FG I K S+ Y FV F + + A RA E + G L ND ++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 57 I 57
+
Sbjct: 170 V 170
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 1 MDEQMLHNAMILFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
+D + L++ FG I K S+ Y FV F + + A RA E + G L ND ++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 57 I 57
+
Sbjct: 170 V 170
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 35.8 bits (81), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 1 MDEQMLHNAMILFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
+D + L++ FG I K S+ Y FV F + + A RA E + G L ND ++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 57 I 57
+
Sbjct: 170 V 170
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 35.8 bits (81), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 1 MDEQMLHNAMILFGEIERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
+D + L++ FG I K S+ Y FV F + + A RA E + G L ND ++
Sbjct: 110 IDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 169
Query: 57 I 57
+
Sbjct: 170 V 170
>sp|P0C196|PPIL4_USTMA Peptidyl-prolyl cis-trans isomerase-like 4 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=CYP6 PE=3 SV=1
Length = 551
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 16 IERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62
I+ K+ S Y+F+EF D+A RA +Q L +D RI + FS S
Sbjct: 294 IKDKKTGDSLQYAFIEFDKKDDAERAYFKMQNVLVDDRRIWVDFSQS 340
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60
+ E+ L A GE+ +K ++ Y +V+F++ A A + +QG++ + I +S
Sbjct: 248 VTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWS 307
Query: 61 SSELAPGKD 69
+ PG+D
Sbjct: 308 KN---PGQD 313
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 35.0 bits (79), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 55
+D + LH FG I K SR + FV F + +AR A E + G L ND +
Sbjct: 137 IDNKSLHETFSTFGNILSCKVATDENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEV 196
Query: 56 TIMFSSSE 63
+ S+
Sbjct: 197 YVALHVSK 204
>sp|O94359|YHOC_SCHPO Uncharacterized RNA-binding protein C428.12c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC428.12c PE=4 SV=2
Length = 116
Score = 35.0 bits (79), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 3 EQMLHNAMILFGEI-----ERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFND 52
E +L+NA I FGEI R + R+Y+FVEF ++A+ A E + + D
Sbjct: 19 ESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEAMENMNYSILCD 73
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 35.0 bits (79), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60
+ E+ L FGEI +K P + FV+F + A A LQG + RI + +
Sbjct: 314 VSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWG 373
Query: 61 SSE---LAPGKDYPGSYSGTKGPRSEMF 85
++ AP +Y S T P + +F
Sbjct: 374 RNQNPIAAPALNYQSQVSQTTIPATSLF 401
>sp|O02008|TRA2_DROVI Transformer-2 sex-determining protein OS=Drosophila virilis GN=tra2
PE=3 SV=1
Length = 272
Score = 34.3 bits (77), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 3 EQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
+Q + FG IERI+ ++ SR + F+ F ++ +AR AK+ G + RI
Sbjct: 118 QQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIR 177
Query: 57 IMFSSSELAPGKDYPGSYSG 76
+ +S ++ A PG Y G
Sbjct: 178 VDYSITQRAHTPT-PGVYMG 196
>sp|Q8KEZ7|TRPA_CHLTE Tryptophan synthase alpha chain OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=trpA PE=3 SV=1
Length = 267
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 31/66 (46%)
Query: 561 LQESTASLSQQGMVYSRPLPNFSIAPQAAPVAVSPPVHQQYQFAAPSNSQKGYGMMQGTE 620
LQES L + GM YS P+ + S+ AA A+S VH F ++ G G + T
Sbjct: 38 LQESGVDLIELGMPYSDPIGDGSVIQDAAHKAISHGVHVGSIFELVRRARNGEGCKKITT 97
Query: 621 ASTLYG 626
L G
Sbjct: 98 PILLMG 103
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 1 MDEQMLHNAMILFGEI---ERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDP 53
+DE++L++ FG I +I P S+ Y+F+ F S D + A E + G+ +
Sbjct: 111 IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR 170
Query: 54 RITIMFSSSELAPGKDYPGSYSGTKGPR 81
IT+ ++ KD G G+ R
Sbjct: 171 PITVSYAFK-----KDSKGERHGSAAER 193
>sp|P0C1I6|PPIL4_RHIO9 Peptidyl-prolyl cis-trans isomerase-like 4 OS=Rhizopus delemar
(strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL
43880) GN=cyp13 PE=3 SV=1
Length = 446
Score = 33.9 bits (76), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 2 DEQMLHNAMILFGEIERIKSY---PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIM 58
D +M+ + L E I+ S +Y+FVEF + ++A A +Q L +D RI +
Sbjct: 257 DLEMIFSRFGLIHSCEIIRDRQTGDSLSYAFVEFENKEDAEEAYFKMQSVLIDDRRIHVD 316
Query: 59 FSSSELAPGKDYPGSYSG 76
FS S KD+ +G
Sbjct: 317 FSQSVSKLHKDWIAKRTG 334
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 1 MDEQMLHNAMILFGEI---ERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDP 53
+DE++L++ FG I +I P S+ Y+F+ F S D + A E + G+ +
Sbjct: 111 IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR 170
Query: 54 RITIMFSSSELAPGKDYPGSYSGTKGPR 81
IT+ ++ KD G G+ R
Sbjct: 171 PITVSYAFK-----KDSKGERHGSAAER 193
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 1 MDEQMLHNAMILFGEI---ERIKSYP----SRNYSFVEFRSVDEARRAKEGLQGRLFNDP 53
+DE++L++ FG I +I P S+ Y+F+ F S D + A E + G+ +
Sbjct: 111 IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNR 170
Query: 54 RITIMFSSSELAPGKDYPGSYSGTKGPR 81
IT+ ++ KD G G+ R
Sbjct: 171 PITVSYAFK-----KDSKGERHGSAAER 193
>sp|P62997|TRA2B_RAT Transformer-2 protein homolog beta OS=Rattus norvegicus GN=Tra2b
PE=1 SV=1
Length = 288
Score = 33.9 bits (76), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 3 EQMLHNAMILFGEIERI------KSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
E+ L +G I + +S SR ++FV F +VD+A+ AKE G + RI
Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190
Query: 57 IMFSSSELAPGKDYPGSYSG 76
+ FS ++ P PG Y G
Sbjct: 191 VDFSITKR-PHTPTPGIYMG 209
>sp|P62996|TRA2B_MOUSE Transformer-2 protein homolog beta OS=Mus musculus GN=Tra2b PE=1
SV=1
Length = 288
Score = 33.9 bits (76), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 3 EQMLHNAMILFGEIERI------KSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
E+ L +G I + +S SR ++FV F +VD+A+ AKE G + RI
Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190
Query: 57 IMFSSSELAPGKDYPGSYSG 76
+ FS ++ P PG Y G
Sbjct: 191 VDFSITKR-PHTPTPGIYMG 209
>sp|P62995|TRA2B_HUMAN Transformer-2 protein homolog beta OS=Homo sapiens GN=TRA2B PE=1
SV=1
Length = 288
Score = 33.9 bits (76), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 3 EQMLHNAMILFGEIERI------KSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
E+ L +G I + +S SR ++FV F +VD+A+ AKE G + RI
Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190
Query: 57 IMFSSSELAPGKDYPGSYSG 76
+ FS ++ P PG Y G
Sbjct: 191 VDFSITKR-PHTPTPGIYMG 209
>sp|Q3ZBT6|TRA2B_BOVIN Transformer-2 protein homolog beta OS=Bos taurus GN=TRA2B PE=2 SV=1
Length = 288
Score = 33.9 bits (76), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 3 EQMLHNAMILFGEIERI------KSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56
E+ L +G I + +S SR ++FV F +VD+A+ AKE G + RI
Sbjct: 131 ERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 190
Query: 57 IMFSSSELAPGKDYPGSYSG 76
+ FS ++ P PG Y G
Sbjct: 191 VDFSITKR-PHTPTPGIYMG 209
>sp|Q7ZXB5|RBM22_XENLA Pre-mRNA-splicing factor RBM22 OS=Xenopus laevis GN=rbm22 PE=2 SV=1
Length = 417
Score = 33.5 bits (75), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLF-NDPRITIMF 59
+ E L N FGEI I + +F++F + A A E +L N R+ + +
Sbjct: 243 ISESELRNHFYQFGEIRTITVVQRQQCAFIQFATRQSAETAAEKSFNKLIVNGRRLNVKW 302
Query: 60 SSSELAPGKDYPGSYSGTKGPRSE 83
S+ A GK+ SG G + E
Sbjct: 303 GRSQAARGKEREHDGSGDPGMKFE 326
>sp|P20876|POL_HV2ST Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate ST) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 33.1 bits (74), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 594 SPPVHQQYQ----FAAPS--NSQKGYGMM-----QGTEASTLYGSSVFQQPNNPTAVSN- 641
S P+H+ ++ F PS N++ G + QG + S +Q P +N
Sbjct: 728 SIPLHEDFRQYTAFTLPSINNAEPGKRYIYKVSPQGWKGSPAIFQYTMRQVLEPFRKANP 787
Query: 642 QVNLSQPQNVMTVSVDKVNLEHPNHVQQLQSVLSGAGQGTSDGEVDKNQRYQ 693
+ L Q + + ++ D+ +LEH V QL+ +L+G G T D + K+ YQ
Sbjct: 788 DIILIQYMDDILIASDRTDLEHDRVVLQLKELLNGLGFSTPDEKFQKDPPYQ 839
>sp|Q74120|POL_HV2KR Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype
A (isolate KR) GN=gag-pol PE=3 SV=3
Length = 1463
Score = 33.1 bits (74), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 594 SPPVHQQYQ----FAAPS--NSQKG----YGMM-QGTEASTLYGSSVFQQPNNPTAVSN- 641
S P+H+ ++ F P+ N++ G Y ++ QG + S +Q P +N
Sbjct: 728 SIPLHEDFRQYTAFTLPTVNNAEPGKRYIYKVLPQGWKGSPAIFQHTMRQVLEPFRKANP 787
Query: 642 QVNLSQPQNVMTVSVDKVNLEHPNHVQQLQSVLSGAGQGTSDGEVDKNQRYQ 693
V L Q + + ++ D+ +LEH V QL+ +L+G G T D + K+ Y+
Sbjct: 788 DVILVQYMDDILIASDRTDLEHDRTVLQLKELLNGLGFSTPDEKFQKDPPYK 839
>sp|A1CVV8|PGLRA_NEOFI Probable endopolygalacturonase A OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=pgaA
PE=3 SV=1
Length = 368
Score = 33.1 bits (74), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 207 DGSMPIDDATFPSRK---IDDHGLVLDQSYGLGSITGGPASGAFVN------VQGRNRLS 257
D + + + T+ + K I D+G+V++Q Y GS TG P +G + V G
Sbjct: 268 DATGSVSEVTYSNIKLSGITDYGIVIEQDYENGSPTGTPTTGVPITDLTIDGVTGTVESD 327
Query: 258 PVASKVTAGGFGRNPIDSDFIWRGIIAKGGTPVCRARCVPFG 299
V + G + SD+ W G+ GG + VP G
Sbjct: 328 AVEVYILCG----DGSCSDWTWEGVDITGGETSSKCENVPSG 365
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis
thaliana GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 33.1 bits (74), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 12 LFGEIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDY 70
LF R++ R+Y+FVEF +A A+ L GR F+ RIT+ S +D
Sbjct: 30 LFSRYGRVRDVDMKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRGSRD- 88
Query: 71 PGSYSGTKGP 80
+G++GP
Sbjct: 89 ----NGSRGP 94
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 285,005,246
Number of Sequences: 539616
Number of extensions: 12788721
Number of successful extensions: 26022
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 25841
Number of HSP's gapped (non-prelim): 301
length of query: 724
length of database: 191,569,459
effective HSP length: 125
effective length of query: 599
effective length of database: 124,117,459
effective search space: 74346357941
effective search space used: 74346357941
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 65 (29.6 bits)