Query 004905
Match_columns 724
No_of_seqs 158 out of 998
Neff 3.2
Searched_HMMs 46136
Date Thu Mar 28 14:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004905.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004905hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13893 RRM_5: RNA recognitio 99.5 1.7E-13 3.6E-18 107.4 7.3 55 6-60 1-56 (56)
2 PLN03134 glycine-rich RNA-bind 99.4 7.2E-13 1.6E-17 124.3 10.1 65 1-65 46-116 (144)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 8.6E-13 1.9E-17 134.1 8.5 64 1-64 281-350 (352)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.4 9.2E-13 2E-17 133.9 7.6 77 1-77 15-97 (352)
5 PF07744 SPOC: SPOC domain; I 99.3 1.5E-12 3.3E-17 115.1 5.3 97 279-375 1-119 (119)
6 TIGR01659 sex-lethal sex-letha 99.3 4.9E-12 1.1E-16 133.7 8.4 78 1-78 119-202 (346)
7 PF00076 RRM_1: RNA recognitio 99.3 6.9E-12 1.5E-16 98.4 5.3 56 1-56 10-70 (70)
8 KOG0111 Cyclophilin-type pepti 99.2 3.8E-12 8.2E-17 129.0 4.2 67 1-67 22-94 (298)
9 KOG0148 Apoptosis-promoting RN 99.2 2E-11 4.4E-16 126.4 7.3 66 1-66 176-241 (321)
10 KOG0148 Apoptosis-promoting RN 99.2 1.2E-11 2.6E-16 128.1 5.5 64 1-64 74-143 (321)
11 KOG0107 Alternative splicing f 99.2 2.2E-11 4.9E-16 119.8 6.7 66 1-66 22-88 (195)
12 KOG0125 Ataxin 2-binding prote 99.2 2.3E-11 5E-16 128.3 6.8 77 2-78 109-190 (376)
13 smart00361 RRM_1 RNA recogniti 99.2 3.7E-11 8E-16 99.0 6.4 57 2-58 1-70 (70)
14 KOG0145 RNA-binding protein EL 99.2 3.9E-11 8.5E-16 124.0 6.6 80 1-82 53-138 (360)
15 smart00360 RRM RNA recognition 99.1 1.3E-10 2.7E-15 88.1 7.2 58 1-58 8-71 (71)
16 TIGR01628 PABP-1234 polyadenyl 99.1 1E-10 2.2E-15 127.9 8.4 63 1-63 297-364 (562)
17 KOG4207 Predicted splicing fac 99.1 8.3E-11 1.8E-15 118.5 6.7 64 2-65 26-95 (256)
18 KOG0122 Translation initiation 99.1 8.5E-11 1.8E-15 120.3 6.8 63 1-63 201-269 (270)
19 TIGR01628 PABP-1234 polyadenyl 99.1 1.4E-10 3.1E-15 126.8 8.2 77 1-77 12-96 (562)
20 TIGR01659 sex-lethal sex-letha 99.1 2.1E-10 4.5E-15 121.5 8.6 66 1-66 205-278 (346)
21 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 1.9E-10 4.1E-15 125.0 8.4 65 1-65 288-353 (481)
22 smart00362 RRM_2 RNA recogniti 99.1 3.9E-10 8.5E-15 85.9 7.2 58 1-58 11-72 (72)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.1 3.1E-10 6.7E-15 123.4 8.3 64 1-64 14-79 (481)
24 TIGR01622 SF-CC1 splicing fact 99.0 4.2E-10 9.1E-15 119.2 7.6 62 1-62 198-265 (457)
25 TIGR01648 hnRNP-R-Q heterogene 99.0 4.8E-10 1E-14 126.0 8.1 63 1-65 245-309 (578)
26 TIGR01645 half-pint poly-U bin 99.0 5.7E-10 1.2E-14 126.1 8.3 64 1-64 216-285 (612)
27 PF14259 RRM_6: RNA recognitio 99.0 4.4E-10 9.6E-15 90.2 5.2 56 1-56 10-70 (70)
28 cd00590 RRM RRM (RNA recogniti 99.0 1.6E-09 3.4E-14 83.0 7.6 59 1-59 11-74 (74)
29 PLN03120 nucleic acid binding 99.0 1.2E-09 2.6E-14 112.7 8.7 62 1-63 16-80 (260)
30 COG0724 RNA-binding proteins ( 99.0 1.1E-09 2.4E-14 100.3 7.5 62 1-62 127-194 (306)
31 PLN03213 repressor of silencin 99.0 7.6E-10 1.7E-14 121.6 7.2 62 1-62 22-87 (759)
32 TIGR01645 half-pint poly-U bin 99.0 8.9E-10 1.9E-14 124.5 7.2 61 1-61 119-185 (612)
33 TIGR01642 U2AF_lg U2 snRNP aux 98.9 1.6E-09 3.4E-14 116.2 8.2 64 1-64 307-376 (509)
34 TIGR01642 U2AF_lg U2 snRNP aux 98.9 2.3E-09 5.1E-14 114.8 7.5 59 4-62 434-501 (509)
35 TIGR01622 SF-CC1 splicing fact 98.8 6E-09 1.3E-13 110.5 7.8 61 3-63 386-448 (457)
36 KOG0117 Heterogeneous nuclear 98.8 7.6E-09 1.7E-13 112.8 8.7 74 1-76 271-344 (506)
37 KOG0105 Alternative splicing f 98.8 5.6E-09 1.2E-13 104.3 6.6 65 1-65 18-85 (241)
38 KOG0108 mRNA cleavage and poly 98.8 6.7E-09 1.4E-13 113.7 6.2 67 1-67 30-102 (435)
39 KOG0144 RNA-binding protein CU 98.8 7.7E-09 1.7E-13 112.5 6.2 66 1-66 136-209 (510)
40 KOG0113 U1 small nuclear ribon 98.8 1.4E-08 3.1E-13 106.5 7.8 66 1-66 113-184 (335)
41 TIGR01648 hnRNP-R-Q heterogene 98.8 1.2E-08 2.5E-13 115.1 7.2 62 1-62 70-137 (578)
42 KOG0149 Predicted RNA-binding 98.8 1.4E-08 3.1E-13 103.7 7.1 80 2-82 25-113 (247)
43 PLN03121 nucleic acid binding 98.7 1.8E-08 3.9E-13 103.3 7.7 60 1-61 17-79 (243)
44 KOG0130 RNA-binding protein RB 98.7 9.1E-09 2E-13 98.8 5.2 64 1-64 84-153 (170)
45 KOG0131 Splicing factor 3b, su 98.7 1.6E-08 3.4E-13 100.6 5.9 67 1-67 108-181 (203)
46 KOG0124 Polypyrimidine tract-b 98.7 1.2E-08 2.6E-13 109.5 4.7 60 1-60 125-190 (544)
47 KOG0145 RNA-binding protein EL 98.7 3.4E-08 7.4E-13 102.7 7.2 62 1-62 290-357 (360)
48 KOG0121 Nuclear cap-binding pr 98.6 6.4E-08 1.4E-12 92.4 6.0 60 1-60 48-113 (153)
49 KOG0153 Predicted RNA-binding 98.6 7.5E-08 1.6E-12 102.7 6.7 62 1-62 240-302 (377)
50 KOG4206 Spliceosomal protein s 98.6 1.2E-07 2.6E-12 96.2 7.5 64 3-66 23-93 (221)
51 KOG0117 Heterogeneous nuclear 98.6 9.5E-08 2E-12 104.5 7.0 71 1-77 95-172 (506)
52 KOG0123 Polyadenylate-binding 98.6 9.6E-08 2.1E-12 102.5 6.8 64 1-65 88-155 (369)
53 KOG0123 Polyadenylate-binding 98.5 1.9E-07 4.2E-12 100.3 7.0 66 1-66 10-78 (369)
54 KOG0114 Predicted RNA-binding 98.5 3.3E-07 7.1E-12 85.1 7.2 65 1-65 30-97 (124)
55 KOG0109 RNA-binding protein LA 98.5 1.6E-07 3.4E-12 98.8 5.1 63 1-65 14-76 (346)
56 KOG0144 RNA-binding protein CU 98.5 2.6E-07 5.6E-12 101.0 6.8 66 1-66 46-120 (510)
57 KOG0147 Transcriptional coacti 98.4 1.8E-07 3.9E-12 104.1 5.6 65 1-65 290-360 (549)
58 KOG0132 RNA polymerase II C-te 98.4 2.8E-07 6E-12 105.8 7.0 63 1-63 433-495 (894)
59 KOG4208 Nucleolar RNA-binding 98.4 4.8E-07 1E-11 91.3 5.9 62 2-63 62-130 (214)
60 KOG0109 RNA-binding protein LA 98.4 3.6E-07 7.8E-12 96.2 4.9 63 2-66 91-153 (346)
61 KOG0127 Nucleolar protein fibr 98.3 7.9E-07 1.7E-11 99.4 6.6 63 2-64 130-197 (678)
62 KOG0146 RNA-binding protein ET 98.3 9.5E-07 2.1E-11 92.4 6.4 64 2-65 32-103 (371)
63 KOG0126 Predicted RNA-binding 98.3 6.4E-08 1.4E-12 96.6 -2.7 65 1-65 47-117 (219)
64 KOG0131 Splicing factor 3b, su 98.2 1.1E-06 2.3E-11 87.9 5.0 61 1-61 21-87 (203)
65 KOG0415 Predicted peptidyl pro 98.2 1.2E-06 2.5E-11 94.4 4.1 62 1-62 251-318 (479)
66 KOG0146 RNA-binding protein ET 98.0 3.9E-06 8.4E-11 88.0 4.3 64 2-65 298-367 (371)
67 KOG0127 Nucleolar protein fibr 98.0 5E-06 1.1E-10 93.2 5.1 67 1-67 17-89 (678)
68 KOG0110 RNA-binding protein (R 98.0 4.4E-06 9.5E-11 95.5 4.1 64 2-65 626-695 (725)
69 KOG0106 Alternative splicing f 98.0 3.5E-06 7.5E-11 85.6 2.9 62 1-64 13-74 (216)
70 KOG4660 Protein Mei2, essentia 98.0 3.3E-06 7.2E-11 94.4 2.9 56 1-56 87-143 (549)
71 KOG4661 Hsp27-ERE-TATA-binding 98.0 8.8E-06 1.9E-10 91.6 6.0 63 3-65 419-487 (940)
72 KOG0110 RNA-binding protein (R 98.0 1.2E-05 2.7E-10 91.9 7.2 60 2-61 528-596 (725)
73 KOG0226 RNA-binding proteins [ 97.6 4.4E-05 9.6E-10 79.6 4.3 60 1-60 202-267 (290)
74 KOG1456 Heterogeneous nuclear 97.6 7.6E-05 1.7E-09 81.2 5.9 65 1-65 134-201 (494)
75 KOG0124 Polypyrimidine tract-b 97.6 6.8E-05 1.5E-09 81.4 5.0 61 1-61 222-288 (544)
76 KOG1190 Polypyrimidine tract-b 97.6 0.00013 2.9E-09 80.0 6.7 65 1-65 310-375 (492)
77 KOG4212 RNA-binding protein hn 97.5 0.00015 3.3E-09 80.1 6.6 57 4-60 59-121 (608)
78 KOG0106 Alternative splicing f 97.4 6.9E-05 1.5E-09 76.4 2.6 57 2-60 112-168 (216)
79 KOG0120 Splicing factor U2AF, 97.4 0.00024 5.2E-09 79.8 6.7 59 4-62 424-491 (500)
80 KOG0151 Predicted splicing reg 97.4 0.00017 3.7E-09 83.1 4.7 64 1-64 186-258 (877)
81 KOG0147 Transcriptional coacti 97.3 0.00049 1.1E-08 77.5 6.9 61 3-63 467-528 (549)
82 KOG0533 RRM motif-containing p 97.2 0.0009 1.9E-08 69.4 7.3 66 1-66 95-165 (243)
83 KOG0116 RasGAP SH3 binding pro 97.2 0.0015 3.2E-08 72.3 9.1 62 1-63 300-367 (419)
84 KOG2202 U2 snRNP splicing fact 97.1 0.00023 5.1E-09 74.1 2.6 59 4-62 83-147 (260)
85 KOG1548 Transcription elongati 97.1 0.00086 1.9E-08 72.5 6.8 59 3-61 290-350 (382)
86 KOG4212 RNA-binding protein hn 97.1 0.00062 1.3E-08 75.5 5.8 59 2-60 549-608 (608)
87 KOG1457 RNA binding protein (c 97.1 0.0011 2.4E-08 68.7 6.9 65 2-66 47-121 (284)
88 KOG4454 RNA binding protein (R 97.1 0.00045 9.8E-09 71.3 4.1 61 1-62 21-86 (267)
89 KOG4209 Splicing factor RNPS1, 97.0 0.00076 1.7E-08 69.1 4.8 61 2-63 114-180 (231)
90 KOG1190 Polypyrimidine tract-b 96.9 0.00085 1.8E-08 73.9 4.6 62 1-62 162-227 (492)
91 PF11608 Limkain-b1: Limkain b 96.9 0.0025 5.4E-08 57.7 6.4 57 5-65 22-79 (90)
92 KOG4205 RNA-binding protein mu 96.8 0.00076 1.7E-08 72.0 3.2 65 1-66 18-88 (311)
93 PF14605 Nup35_RRM_2: Nup53/35 96.6 0.0038 8.3E-08 50.6 4.9 40 3-42 14-53 (53)
94 KOG4205 RNA-binding protein mu 96.5 0.0026 5.7E-08 68.0 4.3 64 1-65 109-178 (311)
95 PF08777 RRM_3: RNA binding mo 96.4 0.0068 1.5E-07 55.3 6.0 57 2-58 14-75 (105)
96 COG5175 MOT2 Transcriptional r 96.3 0.0059 1.3E-07 66.4 5.6 57 7-63 138-203 (480)
97 KOG1996 mRNA splicing factor [ 96.3 0.0064 1.4E-07 65.1 5.7 61 3-63 300-367 (378)
98 PF04059 RRM_2: RNA recognitio 96.3 0.011 2.4E-07 53.8 6.4 62 2-63 14-87 (97)
99 KOG2314 Translation initiation 96.1 0.0074 1.6E-07 68.8 5.3 54 5-58 80-139 (698)
100 KOG1456 Heterogeneous nuclear 96.0 0.014 3.1E-07 64.2 6.8 63 2-64 301-364 (494)
101 KOG0120 Splicing factor U2AF, 95.7 0.0074 1.6E-07 68.2 3.2 65 1-65 301-371 (500)
102 KOG4210 Nuclear localization s 95.6 0.0064 1.4E-07 64.1 2.0 64 1-65 197-266 (285)
103 KOG4206 Spliceosomal protein s 95.5 0.027 5.8E-07 58.2 6.0 62 1-62 158-221 (221)
104 PF04847 Calcipressin: Calcipr 95.3 0.024 5.2E-07 56.7 5.1 61 3-63 9-71 (184)
105 KOG1855 Predicted RNA-binding 94.8 0.016 3.5E-07 64.4 2.5 46 4-49 246-310 (484)
106 KOG1995 Conserved Zn-finger pr 94.8 0.03 6.5E-07 61.0 4.4 66 1-66 78-157 (351)
107 KOG1457 RNA binding protein (c 94.7 0.037 8.1E-07 57.8 4.4 51 1-51 222-274 (284)
108 KOG1548 Transcription elongati 94.0 0.1 2.2E-06 57.2 6.1 65 1-65 146-223 (382)
109 PF05172 Nup35_RRM: Nup53/35/4 93.9 0.12 2.6E-06 47.5 5.6 57 4-61 20-90 (100)
110 PF08952 DUF1866: Domain of un 93.7 0.15 3.2E-06 50.0 6.1 57 4-63 51-107 (146)
111 KOG4574 RNA-binding protein (c 93.5 0.051 1.1E-06 64.6 2.9 61 3-63 312-374 (1007)
112 KOG0112 Large RNA-binding prot 92.9 0.11 2.3E-06 62.2 4.5 63 3-65 469-533 (975)
113 PF15023 DUF4523: Protein of u 92.1 0.36 7.8E-06 47.9 6.3 53 6-60 107-159 (166)
114 KOG2068 MOT2 transcription fac 91.4 0.089 1.9E-06 57.1 1.4 62 2-63 91-163 (327)
115 PF03880 DbpA: DbpA RNA bindin 90.3 0.45 9.8E-06 40.5 4.5 56 2-60 14-74 (74)
116 KOG2416 Acinus (induces apopto 90.1 0.21 4.6E-06 57.8 3.0 62 2-63 457-522 (718)
117 KOG2135 Proteins containing th 87.7 0.42 9.2E-06 54.2 3.2 65 2-67 386-450 (526)
118 KOG4285 Mitotic phosphoprotein 86.9 0.96 2.1E-05 49.2 5.1 51 4-55 211-261 (350)
119 KOG3152 TBP-binding protein, a 86.5 0.33 7.2E-06 51.6 1.5 53 2-54 87-157 (278)
120 KOG4307 RNA binding protein RB 84.9 1.5 3.3E-05 52.0 5.8 59 1-59 879-943 (944)
121 KOG4211 Splicing factor hnRNP- 83.7 1.6 3.6E-05 49.8 5.3 61 1-63 22-86 (510)
122 KOG0112 Large RNA-binding prot 79.9 0.54 1.2E-05 56.6 -0.1 62 1-62 384-450 (975)
123 KOG0128 RNA-binding protein SA 79.8 1 2.2E-05 54.1 2.0 65 2-66 749-818 (881)
124 KOG0128 RNA-binding protein SA 77.8 0.64 1.4E-05 55.7 -0.4 50 2-51 680-735 (881)
125 PF11767 SET_assoc: Histone ly 73.8 6.7 0.00014 34.0 4.8 53 2-57 13-65 (66)
126 KOG4660 Protein Mei2, essentia 69.5 5.2 0.00011 46.4 4.1 43 23-65 429-475 (549)
127 PF08675 RNA_bind: RNA binding 66.5 13 0.00027 34.3 5.2 42 3-46 22-63 (87)
128 KOG0958 DNA damage-responsive 64.8 4.3 9.3E-05 48.1 2.4 56 332-400 14-71 (690)
129 KOG3598 Thyroid hormone recept 63.3 6.7 0.00014 50.1 3.7 45 570-614 1995-2045(2220)
130 KOG4211 Splicing factor hnRNP- 63.0 10 0.00023 43.7 4.9 59 1-60 115-179 (510)
131 KOG4019 Calcineurin-mediated s 62.5 7.6 0.00016 40.0 3.4 61 4-64 30-91 (193)
132 KOG2193 IGF-II mRNA-binding pr 60.7 7.4 0.00016 44.4 3.2 62 2-64 14-77 (584)
133 KOG0115 RNA-binding protein p5 55.7 10 0.00022 40.8 3.1 53 1-53 43-100 (275)
134 cd00594 KU Ku-core domain; inc 50.6 24 0.00052 36.2 4.7 72 318-400 99-177 (272)
135 TIGR02190 GlrX-dom Glutaredoxi 42.3 14 0.0003 31.3 1.3 67 282-355 12-79 (79)
136 KOG2891 Surface glycoprotein [ 42.3 10 0.00022 41.5 0.6 49 2-50 174-247 (445)
137 KOG0105 Alternative splicing f 40.2 47 0.001 34.9 4.9 49 3-52 129-177 (241)
138 PF10357 Kin17_mid: Domain of 39.8 19 0.0004 35.1 1.9 26 345-373 62-88 (127)
139 PF02735 Ku: Ku70/Ku80 beta-ba 39.6 43 0.00093 33.1 4.4 61 334-400 106-174 (200)
140 PF02714 DUF221: Domain of unk 37.6 40 0.00087 35.2 4.1 32 28-61 1-32 (325)
141 KOG1365 RNA-binding protein Fu 37.3 22 0.00048 40.4 2.3 38 23-60 322-359 (508)
142 KOG0129 Predicted RNA-binding 37.0 44 0.00095 39.0 4.5 59 1-62 271-340 (520)
143 cd00789 KU_like Ku-core domain 35.8 1E+02 0.0022 32.7 6.7 75 309-400 88-165 (256)
144 TIGR02772 Ku_bact Ku protein, 35.5 70 0.0015 33.9 5.5 76 309-400 89-166 (258)
145 KOG2591 c-Mpl binding protein, 33.9 41 0.0009 39.8 3.7 53 3-56 189-245 (684)
146 PF07576 BRAP2: BRCA1-associat 32.6 1.3E+02 0.0028 28.4 6.2 50 4-53 28-82 (110)
147 smart00559 Ku78 Ku70 and Ku80 30.8 98 0.0021 29.5 5.2 74 317-400 45-126 (140)
148 KOG4676 Splicing factor, argin 30.6 39 0.00085 38.5 2.8 59 1-60 19-86 (479)
149 PF08544 GHMP_kinases_C: GHMP 30.5 1.9E+02 0.004 24.0 6.2 42 4-46 37-80 (85)
150 PRK11634 ATP-dependent RNA hel 29.9 4.7E+02 0.01 31.1 11.4 38 25-63 526-563 (629)
151 KOG2318 Uncharacterized conser 27.9 1.3E+02 0.0028 36.1 6.3 33 27-59 270-302 (650)
152 cd00788 KU70 Ku-core domain, K 27.7 1.3E+02 0.0028 31.8 5.9 89 309-400 96-192 (287)
153 cd04489 ExoVII_LU_OBF ExoVII_L 27.2 20 0.00044 29.7 -0.1 24 12-36 4-27 (78)
154 KOG4849 mRNA cleavage factor I 27.0 65 0.0014 36.5 3.7 56 2-57 93-156 (498)
155 PF15513 DUF4651: Domain of un 26.3 86 0.0019 27.5 3.5 17 4-20 9-25 (62)
156 smart00545 JmjN Small domain f 26.1 58 0.0013 26.2 2.3 28 343-380 14-41 (42)
157 KOG4307 RNA binding protein RB 22.9 33 0.00072 41.5 0.6 59 2-60 447-511 (944)
158 PF10309 DUF2414: Protein of u 22.7 2.3E+02 0.0049 24.6 5.4 43 2-45 17-62 (62)
159 PF03467 Smg4_UPF3: Smg-4/UPF3 22.3 67 0.0014 32.1 2.5 64 1-64 19-99 (176)
160 KOG0119 Splicing factor 1/bran 21.9 8.4E+02 0.018 29.2 11.1 14 430-443 305-318 (554)
161 KOG2187 tRNA uracil-5-methyltr 21.3 75 0.0016 37.4 2.9 44 23-66 61-104 (534)
162 KOG2253 U1 snRNP complex, subu 21.3 56 0.0012 39.2 2.0 55 2-59 53-107 (668)
No 1
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.46 E-value=1.7e-13 Score=107.36 Aligned_cols=55 Identities=36% Similarity=0.714 Sum_probs=51.9
Q ss_pred HHHHhhhcCceeEeeecCCC-CeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 6 LHNAMILFGEIERIKSYPSR-NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 6 LrelFS~FGeI~sVkt~~SR-GFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
|+++|++||+|++|++.+.+ |+|||+|.+.++|.+|++.|||..|+|++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999988776 99999999999999999999999999999999997
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.42 E-value=7.2e-13 Score=124.25 Aligned_cols=65 Identities=25% Similarity=0.412 Sum_probs=60.1
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++||+|++|++. ++||||||+|++.++|++|++.|||..|+|++|+|++++.+..
T Consensus 46 ~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~~ 116 (144)
T PLN03134 46 TDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116 (144)
T ss_pred CCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCCC
Confidence 6899999999999999999864 4799999999999999999999999999999999999986544
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.38 E-value=8.6e-13 Score=134.10 Aligned_cols=64 Identities=25% Similarity=0.431 Sum_probs=59.3
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|++||.|++|++. .+||||||+|.+.++|.+|+++|||..|+||+|+|+|+..+.
T Consensus 281 ~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 281 TDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred CCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 5899999999999999999854 479999999999999999999999999999999999997553
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.36 E-value=9.2e-13 Score=133.87 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=69.0
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCCCCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSY 74 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk~~p~y~ 74 (724)
++|++|+++|+.||+|.+|++. ++||||||+|.+.++|++|++.|||..|.|++|+|+|+++.....+....|+
T Consensus 15 ~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~~~~~~l~v 94 (352)
T TIGR01661 15 MTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDSIKGANLYV 94 (352)
T ss_pred CCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccccccccceEEE
Confidence 6899999999999999999864 4789999999999999999999999999999999999987766555556788
Q ss_pred CCC
Q 004905 75 SGT 77 (724)
Q Consensus 75 sG~ 77 (724)
.++
T Consensus 95 ~~l 97 (352)
T TIGR01661 95 SGL 97 (352)
T ss_pred CCc
Confidence 776
No 5
>PF07744 SPOC: SPOC domain; InterPro: IPR012921 Spen (split end) proteins regulate the expression of key transcriptional effectors in diverse signalling pathways. They are large proteins characterised by N-terminal RNA-binding motifs and a highly conserved C-terminal SPOC (Spen paralog and ortholog C-terminal) domain. The function of the SPOC domain is unknown, but the SPOC domain of the SHARP Spen protein has been implicated in the interaction of SHARP with the SMRT/NcoR corepressor, where SHARP plays an essential role in the repressor complex []. The SPOC domain is folded into a single compact domain consisting of a beta-barrel with seven strands framed by six alpha helices. A number of deep grooves and clefts in the surface, plus two nonpolar loops, render the SPOC domain well suited to protein-protein interactions; most of the conserved residues occur on the protein surface rather than in the core. Other proteins containing a SPOC domain include drosophila Split ends, which promotes sclerite development in the head and restricts it in the thorax, and mouse MINT (homologue of SHARP), which is involved in skeletal and neuronal development via its repression of Msx2.; PDB: 1OW1_A.
Probab=99.32 E-value=1.5e-12 Score=115.13 Aligned_cols=97 Identities=25% Similarity=0.417 Sum_probs=75.7
Q ss_pred eeeeeccCCcceeeeEeeec-cc-ccc-ccC------CceeecccccchhHHHHHhhh---ccCceEEEEeC-----CCc
Q 004905 279 WRGIIAKGGTPVCRARCVPF-GK-GIE-SEL------PEVVNCSARTGLDMLAKHYAE---AIGFDIVFFLP-----DSE 341 (724)
Q Consensus 279 W~G~iAKgG~pvC~arC~~~-gk-~~~-~~~------P~~ldctaRT~ld~l~khy~~---a~~~~vvff~P-----~s~ 341 (724)
|+|.|...++.-|.++|..+ |. .+. ..| |..|+++-|.+++.+.+...+ +...+||+|.. +++
T Consensus 1 W~G~i~m~~~~~f~~~a~~v~G~~~~~~~~l~~~~~~p~~i~i~gRl~~~~~~~yl~~i~~s~~~~v~v~~~~~~~~~~~ 80 (119)
T PF07744_consen 1 WQGTISMKSVASFSARAHFVSGNCDLLDNVLPWQQLPPKKIDIRGRLDPEKVWDYLRQIRKSRSKDVCVVALSSPESDSN 80 (119)
T ss_dssp EEEEEEETT-EEEEEEEEEEEE-HHHHHHHS-------EEE-EEEE-SHHHHHHHHHHTSSTTT-EEEEEEE-SSHHHHH
T ss_pred CceEEEcCCCCeEEEEEEEEEcchhHhhhhcccccCCCcEEEEEeecCHHHHHHHHHhcccCCCceEEEEEEcCCcccCH
Confidence 99999999999999999999 52 222 235 999999999999999888874 33448888877 788
Q ss_pred hhhhhHHHHHHhhccccccceEeecC-----CcEEEEeC
Q 004905 342 DDFASYTEFLRYLGSKNRAGVAKFDD-----GTTLFLVP 375 (724)
Q Consensus 342 ~D~~~y~eFl~YL~~K~rAgV~K~~~-----~ttLFLVP 375 (724)
+|...|++|+.||.+|+|||||++.+ ...|||||
T Consensus 81 ~~~~~~~~l~~Yl~~k~r~GVv~~~~~~~~~~~dlYl~P 119 (119)
T PF07744_consen 81 SDRRPFQKLVDYLKSKQRAGVVSVGNSPSGQVKDLYLFP 119 (119)
T ss_dssp HHHHHHHHTHHHHHHHTEEEEEEE--TT--S-EEEEEE-
T ss_pred HHHHHHHHHHHHHhhCCEEEEEecCCCCCCceeEEEEcC
Confidence 99999999999999999999999997 68999998
No 6
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.29 E-value=4.9e-12 Score=133.70 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=68.2
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCCCCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSY 74 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk~~p~y~ 74 (724)
+||++|+++|+.||+|++|++. ++||||||+|++.++|++|+++|||..|.|++|+|.||++.....+....|+
T Consensus 119 ~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~~~~~~lfV 198 (346)
T TIGR01659 119 MTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGGESIKDTNLYV 198 (346)
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccccccccceeEE
Confidence 6899999999999999999864 4789999999999999999999999999999999999987655444556777
Q ss_pred CCCC
Q 004905 75 SGTK 78 (724)
Q Consensus 75 sG~~ 78 (724)
.++.
T Consensus 199 ~nLp 202 (346)
T TIGR01659 199 TNLP 202 (346)
T ss_pred eCCC
Confidence 7763
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.26 E-value=6.9e-12 Score=98.42 Aligned_cols=56 Identities=39% Similarity=0.638 Sum_probs=52.4
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEE
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIr 56 (724)
+++++|+++|+.||.|..|++.. .+|||||+|++.++|++|++.|||..|+|+.||
T Consensus 10 ~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 10 VTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp SSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 58999999999999999998654 589999999999999999999999999999986
No 8
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=3.8e-12 Score=129.05 Aligned_cols=67 Identities=27% Similarity=0.467 Sum_probs=62.6
Q ss_pred CCHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 67 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pg 67 (724)
|||..|+.+|.+||.|++|++ .+.||||||+|...|||..||++||+.++.||.|+|+||++.+..+
T Consensus 22 VtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kike 94 (298)
T KOG0111|consen 22 VTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKE 94 (298)
T ss_pred HHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCccccC
Confidence 689999999999999999984 4789999999999999999999999999999999999999887763
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=2e-11 Score=126.36 Aligned_cols=66 Identities=15% Similarity=0.358 Sum_probs=63.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++|++||++|++||.|.+|++++-+|||||.|++.|.|.+||..|||++++|..+||.|.|.....
T Consensus 176 lte~~mr~~Fs~fG~I~EVRvFk~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~ 241 (321)
T KOG0148|consen 176 LTEDLMRQTFSPFGPIQEVRVFKDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDG 241 (321)
T ss_pred ccHHHHHHhcccCCcceEEEEecccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999977654
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.2e-11 Score=128.08 Aligned_cols=64 Identities=25% Similarity=0.462 Sum_probs=59.6
Q ss_pred CCHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
|+.|+||++|.+||+|.+.|+ .++||||||.|-+.+||++||+.|||+.|++|.||-+||.++.
T Consensus 74 I~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 74 IDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred cchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 678999999999999998884 4799999999999999999999999999999999999997665
No 11
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.2e-11 Score=119.83 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=60.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec-CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY-PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+++.||+.+|+.||.|.+|++. ...|||||||++..||++|+..|||+.|+|.+|+||+++.....
T Consensus 22 a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r~ 88 (195)
T KOG0107|consen 22 ATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPRG 88 (195)
T ss_pred cchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCCccc
Confidence 5789999999999999999976 57799999999999999999999999999999999999876553
No 12
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.19 E-value=2.3e-11 Score=128.28 Aligned_cols=77 Identities=19% Similarity=0.315 Sum_probs=66.4
Q ss_pred CHHHHHHHhhhcCceeEeeec----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCC-CCCCCCCC
Q 004905 2 DEQMLHNAMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGK-DYPGSYSG 76 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk-~~p~y~sG 76 (724)
.|.||+..|.+||+|.+|.++ -+||||||+|++.+||++|.++|||..|+||+|.|+-|..+...+| .+..|.-|
T Consensus 109 RdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATarV~n~K~~v~p~~~g 188 (376)
T KOG0125|consen 109 RDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATARVHNKKKKVLPYPNG 188 (376)
T ss_pred cCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchhhccCCcccCCCccc
Confidence 578999999999999999964 4789999999999999999999999999999999999987755444 55666555
Q ss_pred CC
Q 004905 77 TK 78 (724)
Q Consensus 77 ~~ 78 (724)
-+
T Consensus 189 ~~ 190 (376)
T KOG0125|consen 189 WK 190 (376)
T ss_pred cc
Confidence 43
No 13
>smart00361 RRM_1 RNA recognition motif.
Probab=99.18 E-value=3.7e-11 Score=99.01 Aligned_cols=57 Identities=23% Similarity=0.464 Sum_probs=51.3
Q ss_pred CHHHHHHHhh----hcCceeEee-e--------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEE
Q 004905 2 DEQMLHNAMI----LFGEIERIK-S--------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIM 58 (724)
Q Consensus 2 dEedLrelFS----~FGeI~sVk-t--------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVe 58 (724)
.|++|++.|+ +||+|.+|. + ..+||||||+|.+.++|.+|++.|||+.++|+.|++.
T Consensus 1 ~~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 1 KDEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred CchhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 4789999999 999999984 2 2469999999999999999999999999999999873
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.16 E-value=3.9e-11 Score=124.00 Aligned_cols=80 Identities=26% Similarity=0.355 Sum_probs=74.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCCCCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSY 74 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk~~p~y~ 74 (724)
+|+|+||.+|...|||++||++ .+-|||||.|.+.+||++||..|||-.+..+.|||.||++..+..|+.+.|+
T Consensus 53 MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~Ik~aNLYv 132 (360)
T KOG0145|consen 53 MTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSIKDANLYV 132 (360)
T ss_pred cCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChhhhcccceEE
Confidence 4899999999999999999965 3669999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 004905 75 SGTKGPRS 82 (724)
Q Consensus 75 sG~~~~rs 82 (724)
+|+ ++.
T Consensus 133 SGl--Pkt 138 (360)
T KOG0145|consen 133 SGL--PKT 138 (360)
T ss_pred ecC--Ccc
Confidence 998 555
No 15
>smart00360 RRM RNA recognition motif.
Probab=99.14 E-value=1.3e-10 Score=88.12 Aligned_cols=58 Identities=29% Similarity=0.562 Sum_probs=53.0
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEE
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIM 58 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVe 58 (724)
+++++|+++|..||.|.+|++.. ++|||||+|.+.++|.+|++.|+|..++|++|+|+
T Consensus 8 ~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 8 VTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred cCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 47899999999999999998643 47899999999999999999999999999999884
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.13 E-value=1e-10 Score=127.89 Aligned_cols=63 Identities=25% Similarity=0.449 Sum_probs=59.2
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|++||+|++|++. ++||||||+|.+.++|.+|+++|||+.|+|++|+|.+|..+
T Consensus 297 ~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 297 VTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred cCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 6899999999999999999864 57899999999999999999999999999999999999764
No 17
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.12 E-value=8.3e-11 Score=118.53 Aligned_cols=64 Identities=16% Similarity=0.355 Sum_probs=59.1
Q ss_pred CHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 2 DEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+.++|+.+|++||.|-+|.| ..+||||||.|.+..||++|+++|+|.+|+|+.|+|.+|+-.+.
T Consensus 26 spd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~arygr~ 95 (256)
T KOG4207|consen 26 SPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARYGRP 95 (256)
T ss_pred CHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhcCCC
Confidence 57899999999999999975 45899999999999999999999999999999999999986655
No 18
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=8.5e-11 Score=120.33 Aligned_cols=63 Identities=30% Similarity=0.449 Sum_probs=59.1
Q ss_pred CCHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 1 MDEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
.+|++|++||.+||.|.+|.+ ..+||||||+|.+.++|.+||+.|||.-++.-.|+|+||++.
T Consensus 201 ~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 201 MREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred cChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 479999999999999999974 468999999999999999999999999999999999999975
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.10 E-value=1.4e-10 Score=126.81 Aligned_cols=77 Identities=21% Similarity=0.256 Sum_probs=64.8
Q ss_pred CCHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCC--CCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGK--DYPG 72 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk--~~p~ 72 (724)
|||++|+++|++||+|++|++ .+++|||||+|.+.++|++|++.||+..|+|+.|+|.|+..+....+ ....
T Consensus 12 vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~v 91 (562)
T TIGR01628 12 VTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNI 91 (562)
T ss_pred CCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCce
Confidence 689999999999999999986 35789999999999999999999999999999999999975543322 2245
Q ss_pred CCCCC
Q 004905 73 SYSGT 77 (724)
Q Consensus 73 y~sG~ 77 (724)
|+.++
T Consensus 92 fV~nL 96 (562)
T TIGR01628 92 FVKNL 96 (562)
T ss_pred EEcCC
Confidence 55554
No 20
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.09 E-value=2.1e-10 Score=121.51 Aligned_cols=66 Identities=18% Similarity=0.303 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCC--CcEEEEeccCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~G--RrIrVefAk~~~~p 66 (724)
|||++|+++|++||+|++|++. ++||||||+|++.++|++||++|||.+|+| ++|+|.+|+.....
T Consensus 205 vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~~ 278 (346)
T TIGR01659 205 ITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGKA 278 (346)
T ss_pred ccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCccccc
Confidence 6899999999999999999864 457999999999999999999999999977 68999999865443
No 21
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.09 E-value=1.9e-10 Score=125.01 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=60.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
|||++|+++|+.||+|++|++++ .||||||+|.+.++|.+|++.|||..|.|++|+|.+++.+..
T Consensus 288 vt~~~L~~lF~~yG~V~~vki~~~~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~ 353 (481)
T TIGR01649 288 VNCDRLFNLFCVYGNVERVKFMKNKKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNV 353 (481)
T ss_pred CCHHHHHHHHHhcCCeEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccccc
Confidence 68999999999999999999775 579999999999999999999999999999999999976643
No 22
>smart00362 RRM_2 RNA recognition motif.
Probab=99.07 E-value=3.9e-10 Score=85.92 Aligned_cols=58 Identities=29% Similarity=0.503 Sum_probs=53.3
Q ss_pred CCHHHHHHHhhhcCceeEeeecCC----CCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEE
Q 004905 1 MDEQMLHNAMILFGEIERIKSYPS----RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIM 58 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~S----RGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVe 58 (724)
+++++|+++|.+||+|.+|++... +|+|||+|.+.++|.+|++.|+|..|.|++|+|.
T Consensus 11 ~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 11 VTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 478999999999999999987654 5999999999999999999999999999999874
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.06 E-value=3.1e-10 Score=123.36 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=59.9
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHh--cCCccCCCcEEEEeccCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGL--QGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaL--NGk~f~GRrIrVefAk~~~ 64 (724)
+||++|+++|++||+|++|++.++||||||+|++.|+|++|++.| |+..|+|++|+|.||+.+.
T Consensus 14 ~te~~L~~~f~~fG~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 14 VVEADLVEALIPFGPVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred CCHHHHHHHHHhcCCeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 689999999999999999999999999999999999999999974 7899999999999997543
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.02 E-value=4.2e-10 Score=119.16 Aligned_cols=62 Identities=26% Similarity=0.478 Sum_probs=58.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
++|++|+++|++||+|.+|++. ++||||||+|.+.++|.+|++.|||..|.|++|+|.||+.
T Consensus 198 ~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 198 ITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999865 5789999999999999999999999999999999999983
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.02 E-value=4.8e-10 Score=126.01 Aligned_cols=63 Identities=25% Similarity=0.550 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhhc--CceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILF--GEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~F--GeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+||++|+++|++| |+|++|++. |+||||+|++.++|++|+++|||++|+|++|+|+||++...
T Consensus 245 ~tee~L~~~F~~f~~G~I~rV~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~ 309 (578)
T TIGR01648 245 TTEEIIEKSFSEFKPGKVERVKKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDK 309 (578)
T ss_pred CCHHHHHHHHHhcCCCceEEEEee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCc
Confidence 6899999999999 999999875 78999999999999999999999999999999999986543
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.01 E-value=5.7e-10 Score=126.07 Aligned_cols=64 Identities=14% Similarity=0.243 Sum_probs=59.1
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|+.||+|++|++. ++||||||+|++.++|.+|+++|||..|+|+.|+|.+|....
T Consensus 216 vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 216 LSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 5899999999999999999854 479999999999999999999999999999999999998543
No 27
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.01 E-value=4.4e-10 Score=90.15 Aligned_cols=56 Identities=32% Similarity=0.579 Sum_probs=50.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecCC-----CCeEEEEeCCHHHHHHHHHHhcCCccCCCcEE
Q 004905 1 MDEQMLHNAMILFGEIERIKSYPS-----RNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~S-----RGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIr 56 (724)
+++++|+++|+.||.|.+|++... ||+|||+|.+.++|.+|++.++|..|+|+.|+
T Consensus 10 ~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 10 TTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp --HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 589999999999999999987644 79999999999999999999999999999985
No 28
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.99 E-value=1.6e-09 Score=83.01 Aligned_cols=59 Identities=27% Similarity=0.558 Sum_probs=54.5
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEe
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 59 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVef 59 (724)
+++++|++.|..||+|.++++.. .+|+|||+|.+.++|..|++.++|..++|++|+|.|
T Consensus 11 ~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 11 VTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred cCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 47899999999999999998664 379999999999999999999999999999999975
No 29
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.98 E-value=1.2e-09 Score=112.73 Aligned_cols=62 Identities=21% Similarity=0.287 Sum_probs=56.9
Q ss_pred CCHHHHHHHhhhcCceeEeeecC---CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP---SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~---SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||++|+++|+.||+|++|++.. .+|||||+|++.++|+.|+. |||..|+|++|+|+.+..-
T Consensus 16 tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 16 ATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 58999999999999999999763 57999999999999999995 9999999999999998643
No 30
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.98 E-value=1.1e-09 Score=100.25 Aligned_cols=62 Identities=27% Similarity=0.479 Sum_probs=57.6
Q ss_pred CCHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
++|++|+++|..||.|.+|++ ..+||||||+|.+.++|..|++.|+|..|.|++|+|.++..
T Consensus 127 ~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 127 VTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 689999999999999988874 36789999999999999999999999999999999999864
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=98.97 E-value=7.6e-10 Score=121.65 Aligned_cols=62 Identities=10% Similarity=0.304 Sum_probs=57.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec--CCCCeEEEEeCCH--HHHHHHHHHhcCCccCCCcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY--PSRNYSFVEFRSV--DEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~--~SRGFAFVeF~s~--EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
|++++|+++|+.||.|.+|++. .+||||||+|.+. +++.+||+.|||..++|+.|+|+-|++
T Consensus 22 VTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 22 VGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred CCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 6899999999999999999976 3699999999987 789999999999999999999999976
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.96 E-value=8.9e-10 Score=124.52 Aligned_cols=61 Identities=25% Similarity=0.435 Sum_probs=56.8
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
++|++|+++|++||+|.+|++. ++||||||+|.+.++|.+|++.|||+.|+||+|+|.++.
T Consensus 119 ~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 119 LREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 5899999999999999999853 589999999999999999999999999999999998654
No 33
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.94 E-value=1.6e-09 Score=116.16 Aligned_cols=64 Identities=17% Similarity=0.351 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
++|++|+++|+.||.|+.|++. .++|||||+|.+.++|..|+++|||..|+|+.|+|.+|....
T Consensus 307 ~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~ 376 (509)
T TIGR01642 307 LGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGA 376 (509)
T ss_pred CCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCC
Confidence 6899999999999999998754 478999999999999999999999999999999999997543
No 34
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.90 E-value=2.3e-09 Score=114.83 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=54.1
Q ss_pred HHHHHHhhhcCceeEeeecC---------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004905 4 QMLHNAMILFGEIERIKSYP---------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 4 edLrelFS~FGeI~sVkt~~---------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
++|+++|++||.|++|++.+ ++|||||+|.++++|++|+++|||+.|+|+.|.|.|...
T Consensus 434 edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 434 EDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred HHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 67999999999999998753 469999999999999999999999999999999999754
No 35
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.83 E-value=6e-09 Score=110.48 Aligned_cols=61 Identities=26% Similarity=0.343 Sum_probs=56.3
Q ss_pred HHHHHHHhhhcCceeEeeec--CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 3 EQMLHNAMILFGEIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~--~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
++||+++|++||+|++|.+. ..+|++||+|.+.++|.+|+++|||+.|+|+.|.|.|...+
T Consensus 386 ~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~ 448 (457)
T TIGR01622 386 LDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVND 448 (457)
T ss_pred HHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHH
Confidence 47899999999999999875 56899999999999999999999999999999999998654
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=7.6e-09 Score=112.83 Aligned_cols=74 Identities=24% Similarity=0.425 Sum_probs=63.7
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCCCCCCCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPGKDYPGSYSG 76 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pgk~~p~y~sG 76 (724)
+|||.|+++|+.||+|++|++. |-||||.|.+.++|.+|+++|||++|+|..|-|.+||+.....+.-+.+..|
T Consensus 271 tTeE~lk~~F~~~G~veRVkk~--rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~r~~~~~g 344 (506)
T KOG0117|consen 271 TTEETLKKLFNEFGKVERVKKP--RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKERKAMRQG 344 (506)
T ss_pred hhHHHHHHHHHhccceEEeecc--cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccchhhhhcc
Confidence 6899999999999999999986 6699999999999999999999999999999999999865544333333333
No 37
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.82 E-value=5.6e-09 Score=104.33 Aligned_cols=65 Identities=22% Similarity=0.394 Sum_probs=58.9
Q ss_pred CCHHHHHHHhhhcCceeEeeecCC---CCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYPS---RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~S---RGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
|.|.+|+++|.+||.|.+|.+... -.||||+|++..||++||..-||..++|-+|+|+|+...+.
T Consensus 18 iRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~ 85 (241)
T KOG0105|consen 18 IREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRS 85 (241)
T ss_pred hhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCc
Confidence 578999999999999999987533 36999999999999999999999999999999999987653
No 38
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.78 E-value=6.7e-09 Score=113.68 Aligned_cols=67 Identities=21% Similarity=0.346 Sum_probs=61.5
Q ss_pred CCHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 67 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pg 67 (724)
++|++|.++|+..|.|.++++ .+.||||||+|.+.++|.+|++.|||.+++||+|+|+|+..+....
T Consensus 30 ~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~~ 102 (435)
T KOG0108|consen 30 GSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNAE 102 (435)
T ss_pred ccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccchhH
Confidence 589999999999999999984 4789999999999999999999999999999999999998766543
No 39
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=7.7e-09 Score=112.52 Aligned_cols=66 Identities=23% Similarity=0.356 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCc-cC--CCcEEEEeccCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRL-FN--DPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~-f~--GRrIrVefAk~~~~p 66 (724)
++|+++|++|++||.|++|.+.+ +||||||+|.+.|.|..||++|||.. +. ..+|.|.||..++.+
T Consensus 136 ~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 136 CTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCc
Confidence 48999999999999999999764 89999999999999999999999986 34 468999999776654
No 40
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.77 E-value=1.4e-08 Score=106.53 Aligned_cols=66 Identities=21% Similarity=0.383 Sum_probs=59.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
.+|.+|++.|+.||+|++|+++ ++||||||+|++..+...|.+..+|..|+|++|-|++-+...-+
T Consensus 113 T~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERgRTvk 184 (335)
T KOG0113|consen 113 TSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERGRTVK 184 (335)
T ss_pred ccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccccccc
Confidence 4799999999999999999854 68999999999999999999999999999999999998755443
No 41
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.76 E-value=1.2e-08 Score=115.09 Aligned_cols=62 Identities=23% Similarity=0.276 Sum_probs=56.6
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccC-CCcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~-GRrIrVefAk~ 62 (724)
++|++|+++|++||+|.+|+++ ++||||||+|.+.|+|++|++.|||.+|. |+.|.|+.+..
T Consensus 70 ~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~~ 137 (578)
T TIGR01648 70 LYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISVD 137 (578)
T ss_pred CCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccccc
Confidence 6899999999999999999864 58999999999999999999999999995 88899887753
No 42
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=1.4e-08 Score=103.70 Aligned_cols=80 Identities=24% Similarity=0.335 Sum_probs=62.6
Q ss_pred CHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCC--C-CCCC
Q 004905 2 DEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG--K-DYPG 72 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pg--k-~~p~ 72 (724)
..|+||+.|++||+|++..+ .++||||||+|+|.|+|.+|++..| -.|+||+-.|+.|.-...+. . ..|.
T Consensus 25 ~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~lg~~pR~~~~~~~~ 103 (247)
T KOG0149|consen 25 HKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASLGGKPRPVPPSQPQ 103 (247)
T ss_pred chHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-CcccccccccchhhhcCccCCCCCCCcc
Confidence 57899999999999998864 4799999999999999999999988 47899999999986533322 2 4455
Q ss_pred CCCCCCCCCC
Q 004905 73 SYSGTKGPRS 82 (724)
Q Consensus 73 y~sG~~~~rs 82 (724)
..+|....|+
T Consensus 104 ~~~g~~~~~~ 113 (247)
T KOG0149|consen 104 QAPGGQQNRP 113 (247)
T ss_pred cccccccCCc
Confidence 5555444444
No 43
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.75 E-value=1.8e-08 Score=103.33 Aligned_cols=60 Identities=20% Similarity=0.205 Sum_probs=55.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecC---CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP---SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~---SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
+||++|+++|+.||+|++|++.+ .+|||||+|++.++|+.|+ .|||..|.|++|.|.-+.
T Consensus 17 tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 17 ATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 58999999999999999999764 4589999999999999999 899999999999998765
No 44
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=9.1e-09 Score=98.83 Aligned_cols=64 Identities=22% Similarity=0.384 Sum_probs=58.1
Q ss_pred CCHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
.+|+++++.|..||+|++|.+ .-.||||.|+|++.++|..||++|||..|.|..|.|+|+.-+.
T Consensus 84 atEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 84 ATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred hhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 479999999999999999973 2368999999999999999999999999999999999996543
No 45
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.72 E-value=1.6e-08 Score=100.59 Aligned_cols=67 Identities=18% Similarity=0.403 Sum_probs=60.8
Q ss_pred CCHHHHHHHhhhcCceeEe-------eecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERI-------KSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 67 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sV-------kt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pg 67 (724)
|||..|+++|+.||.|.+. .+..++|||||.|++.|.+++|++.|||+.+++++|+|+||+++...|
T Consensus 108 vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 108 VDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred hhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 6899999999999999763 245789999999999999999999999999999999999998887664
No 46
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.69 E-value=1.2e-08 Score=109.48 Aligned_cols=60 Identities=23% Similarity=0.435 Sum_probs=55.6
Q ss_pred CCHHHHHHHhhhcCceeEee------ecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 1 MDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVk------t~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
+.|+.||.+|.+||.|++|. +.+.||||||+|+-.|.|..|.|.|||..++||.|+|..-
T Consensus 125 l~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 125 LREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred echHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 46899999999999999997 4578999999999999999999999999999999999843
No 47
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=98.68 E-value=3.4e-08 Score=102.69 Aligned_cols=62 Identities=26% Similarity=0.450 Sum_probs=57.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
.||..|+.+|.+||.|++||+. +-||||||++.+.+||.-||..|||..+++|.|.|.|-..
T Consensus 290 ~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsFKtn 357 (360)
T KOG0145|consen 290 ADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTN 357 (360)
T ss_pred chHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEEecC
Confidence 3789999999999999999965 4799999999999999999999999999999999999754
No 48
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=6.4e-08 Score=92.37 Aligned_cols=60 Identities=27% Similarity=0.373 Sum_probs=55.2
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
++||.|++||++.|+|.+|.+. ..=||+||+|.+.++|.+|+.-+||..++.++|+|+|-
T Consensus 48 ttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 48 TTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred ecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 4899999999999999999754 34599999999999999999999999999999999884
No 49
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=7.5e-08 Score=102.74 Aligned_cols=62 Identities=27% Similarity=0.472 Sum_probs=57.8
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCc-cCCCcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRL-FNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~-f~GRrIrVefAk~ 62 (724)
|+|.+|++.|.+||+|++|.+...++||||+|.+.++|+.|.+++-.++ |+|.||+|.|+++
T Consensus 240 v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 240 VLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred hhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 5799999999999999999999999999999999999999998876666 4999999999988
No 50
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.57 E-value=1.2e-07 Score=96.18 Aligned_cols=64 Identities=27% Similarity=0.364 Sum_probs=57.2
Q ss_pred HHHHHH----HhhhcCceeEeee---cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004905 3 EQMLHN----AMILFGEIERIKS---YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 3 EedLre----lFS~FGeI~sVkt---~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
.++|++ +|+.||+|.+|.. .+.||-|||.|.+.+.|..|+++|+|..|-|+.++|.||+.+..-
T Consensus 23 ~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdi 93 (221)
T KOG4206|consen 23 KDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDI 93 (221)
T ss_pred HHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccch
Confidence 345555 9999999999974 468999999999999999999999999999999999999987654
No 51
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=98.56 E-value=9.5e-08 Score=104.52 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=62.7
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCcc-CCCcEEEEeccCCCCCCCCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLF-NDPRITIMFSSSELAPGKDYPGS 73 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f-~GRrIrVefAk~~~~pgk~~p~y 73 (724)
+.|++|.-+|++-|+|.+++++ .+||||||+|.+.++|++||+.||+.+| .|+.|+|+-+-.+.+ .|
T Consensus 95 ~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan~R------LF 168 (506)
T KOG0117|consen 95 VFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVANCR------LF 168 (506)
T ss_pred ccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeecce------eE
Confidence 4699999999999999999965 4799999999999999999999999999 899999999875544 36
Q ss_pred CCCC
Q 004905 74 YSGT 77 (724)
Q Consensus 74 ~sG~ 77 (724)
+.++
T Consensus 169 iG~I 172 (506)
T KOG0117|consen 169 IGNI 172 (506)
T ss_pred eccC
Confidence 6666
No 52
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.56 E-value=9.6e-08 Score=102.55 Aligned_cols=64 Identities=31% Similarity=0.469 Sum_probs=57.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+|..+|.++|+.||+|.+|++. -+||| ||+|++.++|.+||+.|||.+++|+.|.|.....+..
T Consensus 88 ~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 88 IDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred cCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 5788999999999999999965 37999 9999999999999999999999999999988865543
No 53
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=1.9e-07 Score=100.28 Aligned_cols=66 Identities=24% Similarity=0.392 Sum_probs=60.2
Q ss_pred CCHHHHHHHhhhcCceeEeeec---CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY---PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~---~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
|||.+|.++|+++|.|.+|++- .+-|||||+|.+.++|++|+++||...+.|++|+|.|+.++..-
T Consensus 10 v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~ 78 (369)
T KOG0123|consen 10 VTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL 78 (369)
T ss_pred CChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce
Confidence 6899999999999999999832 47899999999999999999999999999999999999866553
No 54
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.48 E-value=3.3e-07 Score=85.09 Aligned_cols=65 Identities=18% Similarity=0.358 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhhcCceeEeeec---CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY---PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~---~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
||.|+..++|.+||.|..|++. ..||-|||.|+++.+|++|++.|+|.-++++-|.|.|-.....
T Consensus 30 ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 30 ITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred ccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 6889999999999999999976 4689999999999999999999999999999999999876543
No 55
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.46 E-value=1.6e-07 Score=98.80 Aligned_cols=63 Identities=24% Similarity=0.327 Sum_probs=59.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|.+|+.+|.+||+|+++.++ |+||||..++...|++||.+|||..|+|..|.|+=||.+..
T Consensus 14 ~~~~elr~lFe~ygkVlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk 76 (346)
T KOG0109|consen 14 ATEQELRSLFEQYGKVLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK 76 (346)
T ss_pred cchHHHHHHHHhhCceEeeeee--cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC
Confidence 4789999999999999999998 78999999999999999999999999999999999987743
No 56
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=98.45 E-value=2.6e-07 Score=100.97 Aligned_cols=66 Identities=18% Similarity=0.297 Sum_probs=57.8
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCcc-C--CCcEEEEeccCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLF-N--DPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f-~--GRrIrVefAk~~~~p 66 (724)
++|+|||++|++||.|.+|.+. .+|||+||+|.+.+||.+|+.+|+.... - ..+|.|.||..++..
T Consensus 46 ~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 46 ASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERER 120 (510)
T ss_pred ccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhc
Confidence 5899999999999999999754 4789999999999999999999998764 3 468999999877664
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.45 E-value=1.8e-07 Score=104.08 Aligned_cols=65 Identities=26% Similarity=0.471 Sum_probs=58.8
Q ss_pred CCHHHHHHHhhhcCceeEee------ecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVk------t~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|+.+|++||.|+.|. +..+||||||+|.+.++|.+|.+.|||-+|.|+.|+|.--.....
T Consensus 290 ite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 290 ITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred chHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 68999999999999999997 446899999999999999999999999999999999987765544
No 58
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.44 E-value=2.8e-07 Score=105.78 Aligned_cols=63 Identities=29% Similarity=0.413 Sum_probs=60.4
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
|+|.||.++|+.||+|.+|.+...||||||++....||.+|+.+|+...|.++.|+|.||...
T Consensus 433 v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 433 VTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred hhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 689999999999999999999999999999999999999999999999999999999999543
No 59
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.37 E-value=4.8e-07 Score=91.33 Aligned_cols=62 Identities=27% Similarity=0.385 Sum_probs=55.8
Q ss_pred CHHHHHHHhhhc-CceeEee------ecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 2 DEQMLHNAMILF-GEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 2 dEedLrelFS~F-GeI~sVk------t~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
.|..+...|.+| |.|++++ ++.+||||||+|++.|.|.=|.|.||+.+|.|+.|.|.|=.++
T Consensus 62 ~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 62 FETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred hHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 467888999999 8888776 4579999999999999999999999999999999999998766
No 60
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.36 E-value=3.6e-07 Score=96.18 Aligned_cols=63 Identities=25% Similarity=0.455 Sum_probs=58.6
Q ss_pred CHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004905 2 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+.++||..|.+||.|.+++++ |+|+||.|.-.|+|..||++|||++|.|++++|..+..+...
T Consensus 91 tn~ElRa~fe~ygpviecdiv--kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrlrt 153 (346)
T KOG0109|consen 91 TNQELRAKFEKYGPVIECDIV--KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 153 (346)
T ss_pred cCHHHhhhhcccCCceeeeee--cceeEEEEeeccchHHHHhcccccccccceeeeeeecccccc
Confidence 568999999999999999997 889999999999999999999999999999999999776543
No 61
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.32 E-value=7.9e-07 Score=99.39 Aligned_cols=63 Identities=19% Similarity=0.325 Sum_probs=56.5
Q ss_pred CHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004905 2 DEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
.+.+|..+|+.||.|.+|.+- +-.|||||+|.+..+|.+|++.|||..|+||+|-|+||-...
T Consensus 130 k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd 197 (678)
T KOG0127|consen 130 KKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKD 197 (678)
T ss_pred CcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccc
Confidence 456999999999999999863 235999999999999999999999999999999999996543
No 62
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.30 E-value=9.5e-07 Score=92.43 Aligned_cols=64 Identities=25% Similarity=0.395 Sum_probs=55.8
Q ss_pred CHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCcc-CC--CcEEEEeccCCCC
Q 004905 2 DEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLF-ND--PRITIMFSSSELA 65 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f-~G--RrIrVefAk~~~~ 65 (724)
.|||+|++|.+||+|++|.+. .+||||||.|.+..||..||.+|+|..- -| ..|.|.||..++.
T Consensus 32 ~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkE 103 (371)
T KOG0146|consen 32 SEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKE 103 (371)
T ss_pred cHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHH
Confidence 599999999999999999865 4799999999999999999999999764 33 5799999976544
No 63
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.28 E-value=6.4e-08 Score=96.58 Aligned_cols=65 Identities=18% Similarity=0.230 Sum_probs=57.1
Q ss_pred CCHHHHHHHhhhcCceeEee------ecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIK------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVk------t~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
.||.||--.|++||+|.+|. +.+++||||..|++...-..|+++|||..|.||.|+|+.-..-+.
T Consensus 47 LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~Yk~ 117 (219)
T KOG0126|consen 47 LTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSNYKK 117 (219)
T ss_pred ccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecccccC
Confidence 36778888999999999996 457999999999999999999999999999999999987644333
No 64
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.25 E-value=1.1e-06 Score=87.87 Aligned_cols=61 Identities=23% Similarity=0.298 Sum_probs=56.9
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
|+|+.|+++|-.-|.|.+|++- ..+|||||+|.+.|||+=|++-||+-.+-||+|+|.-|.
T Consensus 21 vs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 21 VSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred HHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 5789999999999999999853 478999999999999999999999999999999999987
No 65
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.2e-06 Score=94.38 Aligned_cols=62 Identities=27% Similarity=0.416 Sum_probs=56.3
Q ss_pred CCHHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
.++++|+-+|+.||.|.++.+++ +-.||||+|++.++.++|.-.|+..+|++++|+|+|+..
T Consensus 251 TtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 251 TTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred ccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 36899999999999999998653 457999999999999999999999999999999999854
No 66
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.03 E-value=3.9e-06 Score=87.99 Aligned_cols=64 Identities=22% Similarity=0.377 Sum_probs=57.9
Q ss_pred CHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 2 DEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
.+.||-..|-+||.|.+.|++ .+|-||||.|.+..+|..||.+|||..|+=+||||..-+++..
T Consensus 298 gDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 298 GDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred ccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 467999999999999999865 5899999999999999999999999999999999998776543
No 67
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=98.02 E-value=5e-06 Score=93.18 Aligned_cols=67 Identities=15% Similarity=0.223 Sum_probs=60.3
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 67 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pg 67 (724)
++.++|.++|+.+|.|..+.++ ..||||||+|+-.||+.+|+.++++..|+|+.|+|++|+.+..+.
T Consensus 17 ~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e 89 (678)
T KOG0127|consen 17 STGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSE 89 (678)
T ss_pred cchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccccccch
Confidence 4678999999999999988754 469999999999999999999999999999999999998776553
No 68
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.99 E-value=4.4e-06 Score=95.47 Aligned_cols=64 Identities=19% Similarity=0.408 Sum_probs=57.9
Q ss_pred CHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 2 DEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+-.+++.+|..||.|.+|++- -+||||||+|-+..+|.+|+++|.++-|-||+|.++||+.+..
T Consensus 626 t~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 626 TKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred HHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccchH
Confidence 457899999999999999853 2599999999999999999999999999999999999987643
No 69
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.99 E-value=3.5e-06 Score=85.62 Aligned_cols=62 Identities=19% Similarity=0.326 Sum_probs=57.2
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
+.|++|+++|..||.|.+|.+. -||+||+|.+..+|.+||..|||++|+|.++.|+|++...
T Consensus 13 ~~~~d~E~~f~~yg~~~d~~mk--~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 13 ARERDVERFFKGYGKIPDADMK--NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred cchhHHHHHHhhccccccceee--cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 4689999999999999999985 6799999999999999999999999999999999998653
No 70
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.98 E-value=3.3e-06 Score=94.41 Aligned_cols=56 Identities=32% Similarity=0.459 Sum_probs=53.0
Q ss_pred CCHHHHHHHhhhcCceeEeee-cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEE
Q 004905 1 MDEQMLHNAMILFGEIERIKS-YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRIT 56 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt-~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIr 56 (724)
|++++|+++|+.||||..|+. ...||..||+|-|+.+|++|+++||+++|.|++|+
T Consensus 87 Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 87 VSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 789999999999999999984 45789999999999999999999999999999999
No 71
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.98 E-value=8.8e-06 Score=91.58 Aligned_cols=63 Identities=22% Similarity=0.307 Sum_probs=56.5
Q ss_pred HHHHHHHhhhcCceeEeeecC------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 3 EQMLHNAMILFGEIERIKSYP------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
-.+|++||++||+|.-.+++. .|-|+||++.+.++|.++|+.|+-++|.|+-|.|+-|+.+..
T Consensus 419 AtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKNEp~ 487 (940)
T KOG4661|consen 419 ATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKNEPG 487 (940)
T ss_pred hhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecccCcc
Confidence 468999999999998777552 478999999999999999999999999999999999987754
No 72
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.97 E-value=1.2e-05 Score=91.94 Aligned_cols=60 Identities=23% Similarity=0.356 Sum_probs=55.2
Q ss_pred CHHHHHHHhhhcCceeEeeec---------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004905 2 DEQMLHNAMILFGEIERIKSY---------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~---------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
+.++|+.+|.+.|.|.+|.+. .|.|||||+|.+.++|.+|++.|+|+.|+|..|.|.++.
T Consensus 528 t~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 528 TLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred chhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 578999999999999999653 245999999999999999999999999999999999997
No 73
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.64 E-value=4.4e-05 Score=79.64 Aligned_cols=60 Identities=23% Similarity=0.393 Sum_probs=51.9
Q ss_pred CCHHHHHHHhhhcCce------eEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 1 MDEQMLHNAMILFGEI------ERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI------~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
|+++.|-++|.+|-.- .+-++.+++||+||.|.+.+|+.+|+.+|||+-++.|+|+..=+
T Consensus 202 vnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 202 VNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred ccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 5788999999999544 34447789999999999999999999999999999999987544
No 74
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.62 E-value=7.6e-05 Score=81.20 Aligned_cols=65 Identities=25% Similarity=0.319 Sum_probs=58.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecCCCC-eEEEEeCCHHHHHHHHHHhcCCccCC--CcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYPSRN-YSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~SRG-FAFVeF~s~EdA~kAIEaLNGk~f~G--RrIrVefAk~~~~ 65 (724)
||-+-|+.+..+.|+|.+|.+++..| -|.|||++++.|++|+++|||..|-- =+|||+|||+++-
T Consensus 134 ItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~rl 201 (494)
T KOG1456|consen 134 ITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTRL 201 (494)
T ss_pred cchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCccee
Confidence 67788999999999999999987666 89999999999999999999999943 4899999998764
No 75
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=97.59 E-value=6.8e-05 Score=81.40 Aligned_cols=61 Identities=15% Similarity=0.262 Sum_probs=55.6
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
.+|+||+..|+.||+|.+|++. ..||||||+|.+...-.+||..||-..++|.-|||.-+-
T Consensus 222 LSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 222 LSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred ccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 3699999999999999999854 469999999999999999999999999999999987654
No 76
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.55 E-value=0.00013 Score=79.98 Aligned_cols=65 Identities=15% Similarity=0.352 Sum_probs=59.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
||++.|..+|+-||+|.+|+++. .+--|.|.|.|...|.-|++.|+|..+-|++|+|.|+|...-
T Consensus 310 VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~v 375 (492)
T KOG1190|consen 310 VTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNV 375 (492)
T ss_pred cchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccc
Confidence 68999999999999999999764 456999999999999999999999999999999999987644
No 77
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.52 E-value=0.00015 Score=80.08 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=51.2
Q ss_pred HHHHHHhh-hcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 4 QMLHNAMI-LFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 4 edLrelFS-~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
++|++||. +-|+|+-|.+. ++||||.|+|++.|.+++|+|.||-.+++||+|+|.--
T Consensus 59 qdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd 121 (608)
T KOG4212|consen 59 QDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKED 121 (608)
T ss_pred HhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEecc
Confidence 68999986 57999999853 78999999999999999999999999999999998543
No 78
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.44 E-value=6.9e-05 Score=76.37 Aligned_cols=57 Identities=33% Similarity=0.531 Sum_probs=51.1
Q ss_pred CHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 2 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
...+|.+.|.++|+++.... .+++|||+|++.++|.+|++.|+|..++|++|++.++
T Consensus 112 ~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 112 SWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hHHHHhhhhcccCCCchhhh--hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 35899999999999966555 6899999999999999999999999999999999443
No 79
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.42 E-value=0.00024 Score=79.76 Aligned_cols=59 Identities=24% Similarity=0.466 Sum_probs=52.3
Q ss_pred HHHHHHhhhcCceeEeeec---------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004905 4 QMLHNAMILFGEIERIKSY---------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 4 edLrelFS~FGeI~sVkt~---------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
|+++..+++||.|.+|.+- .+-|.-||+|++.+++++|.++|+|+.|+||.|...|=-.
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 5778899999999999853 3568999999999999999999999999999999988543
No 80
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.36 E-value=0.00017 Score=83.14 Aligned_cols=64 Identities=27% Similarity=0.405 Sum_probs=59.1
Q ss_pred CCHHHHHHHhhhcCceeEeeec---------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY---------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~---------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
|+|+.|-..|..||.|.+|+++ +.|.||||-|-+..||++|++.|+|..+.+..+++.|++.=.
T Consensus 186 v~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~ 258 (877)
T KOG0151|consen 186 VDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAVP 258 (877)
T ss_pred ccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccccc
Confidence 6899999999999999999976 357899999999999999999999999999999999998543
No 81
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.27 E-value=0.00049 Score=77.50 Aligned_cols=61 Identities=23% Similarity=0.233 Sum_probs=53.9
Q ss_pred HHHHHHHhhhcCceeEeeecC-CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 3 EQMLHNAMILFGEIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~-SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
++++.+..++||.|..|.+.+ +-||-||.|.++++|..|+.+|||++|.||-|++.|=..+
T Consensus 467 ~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~ 528 (549)
T KOG0147|consen 467 REDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLE 528 (549)
T ss_pred HHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehh
Confidence 366777789999999999775 4599999999999999999999999999999999986543
No 82
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.19 E-value=0.0009 Score=69.41 Aligned_cols=66 Identities=24% Similarity=0.275 Sum_probs=58.5
Q ss_pred CCHHHHHHHhhhcCceeEeee-----cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKS-----YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt-----~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
|+++||+++|..||+++.+-+ .++.|.|=|.|...+||.+|++.+||..++|++|+|+........
T Consensus 95 V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~~~ 165 (243)
T KOG0533|consen 95 VIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSPSQS 165 (243)
T ss_pred cchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCcccc
Confidence 678999999999999988864 367899999999999999999999999999999999988655443
No 83
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.16 E-value=0.0015 Score=72.31 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=52.0
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+++++|+++|..||+|+...+. +...||||+|++.+++..||++- =..++|++|.|+--+..
T Consensus 300 a~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 300 ATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRPG 367 (419)
T ss_pred CCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEecccc
Confidence 4788999999999999877643 22279999999999999999998 66789999999876543
No 84
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.14 E-value=0.00023 Score=74.11 Aligned_cols=59 Identities=27% Similarity=0.403 Sum_probs=50.5
Q ss_pred HHHHHHhh-hcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004905 4 QMLHNAMI-LFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 4 edLrelFS-~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
|+|...|+ +||+|+++++- .-+|=++|.|...|+|++|++.|||+.|+|++|..++..-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pv 147 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPV 147 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCc
Confidence 45555566 99999999743 3478999999999999999999999999999999999853
No 85
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.14 E-value=0.00086 Score=72.54 Aligned_cols=59 Identities=22% Similarity=0.408 Sum_probs=54.4
Q ss_pred HHHHHHHhhhcCceeEeeec--CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004905 3 EQMLHNAMILFGEIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~--~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
+++|++...+||.|.+|.++ ...|-+-|.|.+.++|..||+.|+|+.|+||.|+.....
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~D 350 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWD 350 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeC
Confidence 47889999999999999988 789999999999999999999999999999999876553
No 86
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=97.13 E-value=0.00062 Score=75.53 Aligned_cols=59 Identities=20% Similarity=0.271 Sum_probs=50.9
Q ss_pred CHHHHHHHhhhcCceeEeeec-CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 2 DEQMLHNAMILFGEIERIKSY-PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~-~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
|=++|++-|..||.|..+.++ +.+.-+.|.|.+.++|++|+..|||..++||.|+|.|.
T Consensus 549 TWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 549 TWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred cHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 557899999999999988764 22223399999999999999999999999999999984
No 87
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.10 E-value=0.0011 Score=68.69 Aligned_cols=65 Identities=23% Similarity=0.259 Sum_probs=52.3
Q ss_pred CHHHHHHHhhhcCceeEeee-cCC------CCeEEEEeCCHHHHHHHHHHhcCCccC---CCcEEEEeccCCCCC
Q 004905 2 DEQMLHNAMILFGEIERIKS-YPS------RNYSFVEFRSVDEARRAKEGLQGRLFN---DPRITIMFSSSELAP 66 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt-~~S------RGFAFVeF~s~EdA~kAIEaLNGk~f~---GRrIrVefAk~~~~p 66 (724)
.-.+|+.+|..|---+...+ ..+ +-+|||+|.+..+|.+|+.+|||..|+ +..|+|++||...+.
T Consensus 47 KpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNtK~ 121 (284)
T KOG1457|consen 47 KPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNTKR 121 (284)
T ss_pred CHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCccc
Confidence 45689999999966654432 122 359999999999999999999999995 788999999876554
No 88
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=97.09 E-value=0.00045 Score=71.29 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=55.2
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
||||.|.++|..-|.|.+|++- +.| ||||+|+++-...-|++-|||-.+.++.|+|.+-..
T Consensus 21 v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 21 VSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred hhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 6899999999999999999864 345 999999999999999999999999999999988643
No 89
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.01 E-value=0.00076 Score=69.10 Aligned_cols=61 Identities=20% Similarity=0.341 Sum_probs=53.3
Q ss_pred CHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 2 DEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+-+++...|+-||.|..|.+ ..+||||||+|.+.+.+.+|+. |||..|.|+.|+|.+.+-.
T Consensus 114 t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~~ 180 (231)
T KOG4209|consen 114 TLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKRTN 180 (231)
T ss_pred ccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeeeee
Confidence 34558999999999986653 2479999999999999999999 9999999999999998755
No 90
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=96.93 E-value=0.00085 Score=73.91 Aligned_cols=62 Identities=23% Similarity=0.365 Sum_probs=53.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec-CCCC-eEEEEeCCHHHHHHHHHHhcCCccCC--CcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY-PSRN-YSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-~SRG-FAFVeF~s~EdA~kAIEaLNGk~f~G--RrIrVefAk~ 62 (724)
|+-+-|+.+|++||.|.+|.++ +.-| -|.|.|.+.+.|..|+.+|+|+-|-+ =.|||+|++-
T Consensus 162 VslDVLHqvFS~fG~VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 162 VSLDVLHQVFSKFGFVLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred eEHHHHHHHHhhcceeEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 4567899999999999999987 4455 48999999999999999999999844 3789999875
No 91
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.89 E-value=0.0025 Score=57.67 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=39.5
Q ss_pred HHHHHhhhc-CceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 5 MLHNAMILF-GEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 5 dLrelFS~F-GeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
-|+.++.-+ |+|.+| +.|-|.|.|.+.|.|++|...|+|..+.|++|.|.|....+.
T Consensus 22 RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r~ 79 (90)
T PF11608_consen 22 RLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNRE 79 (90)
T ss_dssp HHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S--
T ss_pred HHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCccc
Confidence 477888888 567666 258999999999999999999999999999999999965544
No 92
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=96.83 E-value=0.00076 Score=71.98 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=52.1
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
++||.|++.|..||+|.++.++ ++|||+||+|++.+.-.+++..- -..|+|++|-+.-|.++...
T Consensus 18 ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~-~h~~dgr~ve~k~av~r~~~ 88 (311)
T KOG4205|consen 18 TTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNAR-THKLDGRSVEPKRAVSREDQ 88 (311)
T ss_pred ccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccc-ccccCCccccceeccCcccc
Confidence 4799999999999999999865 58999999999988766665543 34578888888877666544
No 93
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.58 E-value=0.0038 Score=50.63 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=35.9
Q ss_pred HHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHH
Q 004905 3 EQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAK 42 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAI 42 (724)
.+++.+.|+.||+|+++.....+.+.||+|++..+|++|+
T Consensus 14 ~~~vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 14 AEEVLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 3567889999999999998777889999999999999984
No 94
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=96.48 E-value=0.0026 Score=67.97 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=53.0
Q ss_pred CCHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
++|++|++.|.+||.|.++.+ .+.|||+||+|.+.+..+++ ....-..|+|+.+.|.-|-++..
T Consensus 109 ~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv-~~~~f~~~~gk~vevkrA~pk~~ 178 (311)
T KOG4205|consen 109 TTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKV-TLQKFHDFNGKKVEVKRAIPKEV 178 (311)
T ss_pred CchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccccee-cccceeeecCceeeEeeccchhh
Confidence 589999999999999988863 36899999999988765555 45678899999999999966543
No 95
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.43 E-value=0.0068 Score=55.28 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=39.0
Q ss_pred CHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCC-----ccCCCcEEEE
Q 004905 2 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGR-----LFNDPRITIM 58 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk-----~f~GRrIrVe 58 (724)
+-++|+++|+.||+|.-|...++-.-|||.|.+.++|.+|++.+.-. .+.+..++++
T Consensus 14 ~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 14 SREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred CHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46899999999999999998888889999999999999999988765 4556555543
No 96
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.29 E-value=0.0059 Score=66.37 Aligned_cols=57 Identities=14% Similarity=0.405 Sum_probs=48.1
Q ss_pred HHHhhhcCceeEeeecC-------CCCeE--EEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 7 HNAMILFGEIERIKSYP-------SRNYS--FVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 7 relFS~FGeI~sVkt~~-------SRGFA--FVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
++.|.+||+|.+|.+-+ .-+.+ ||+|.+.|||.+||.+.+|..++||.|+..|..-+
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYGTTK 203 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYGTTK 203 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecCchH
Confidence 47899999999997432 12334 99999999999999999999999999999998643
No 97
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.28 E-value=0.0064 Score=65.13 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=51.2
Q ss_pred HHHHHHHhhhcCceeEeeecC--C-----CCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 3 EQMLHNAMILFGEIERIKSYP--S-----RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~--S-----RGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
|++..+.+.+||.|.+|-++. + -=--||+|+.+++|.+|+-.|||+.|+||.++.+|=+-+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 467788999999999987652 1 124699999999999999999999999999998886543
No 98
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=96.26 E-value=0.011 Score=53.83 Aligned_cols=62 Identities=21% Similarity=0.320 Sum_probs=46.4
Q ss_pred CHHHHHHHhhhc--CceeEe------eecCCCCeEEEEeCCHHHHHHHHHHhcCCccC----CCcEEEEeccCC
Q 004905 2 DEQMLHNAMILF--GEIERI------KSYPSRNYSFVEFRSVDEARRAKEGLQGRLFN----DPRITIMFSSSE 63 (724)
Q Consensus 2 dEedLrelFS~F--GeI~sV------kt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~----GRrIrVefAk~~ 63 (724)
|.++|.+++... |+..=+ +.....|||||.|.+.++|.+-.+.++|+.+. .+...|.||+-+
T Consensus 14 t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAriQ 87 (97)
T PF04059_consen 14 TQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYARIQ 87 (97)
T ss_pred CHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhHhh
Confidence 456677666654 333222 23346899999999999999999999999996 566788998744
No 99
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.07 E-value=0.0074 Score=68.84 Aligned_cols=54 Identities=22% Similarity=0.414 Sum_probs=46.0
Q ss_pred HHHHHhhhcCceeEeee-----cCCCCeEEEEeCCHHHHHHHHHHhcCCccC-CCcEEEE
Q 004905 5 MLHNAMILFGEIERIKS-----YPSRNYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIM 58 (724)
Q Consensus 5 dLrelFS~FGeI~sVkt-----~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~-GRrIrVe 58 (724)
-|.++|+++|+|..+.. ...+||.|++|++..+|++|+..|||+.|+ +.+..|.
T Consensus 80 vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 80 VLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred HHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 47899999999988863 247899999999999999999999999984 5566664
No 100
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.01 E-value=0.014 Score=64.18 Aligned_cols=63 Identities=21% Similarity=0.334 Sum_probs=57.2
Q ss_pred CHHHHHHHhhhcCceeEeeecCCC-CeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCC
Q 004905 2 DEQMLHNAMILFGEIERIKSYPSR-NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSEL 64 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~SR-GFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~ 64 (724)
+-+.|-++|-.||.|++|+.++.| |-|.|++-+..+-++|+.-||+..+.|.+|.|++++..-
T Consensus 301 N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 301 NCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred chhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccccc
Confidence 346788999999999999987765 899999999999999999999999999999999998653
No 101
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=95.68 E-value=0.0074 Score=68.21 Aligned_cols=65 Identities=17% Similarity=0.339 Sum_probs=57.2
Q ss_pred CCHHHHHHHhhhcCceeEeee------cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKS------YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt------~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+++..++++...||.+..... ..++||||.+|.+......|+.+|||+.+.++.|.|..|-....
T Consensus 301 l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~ 371 (500)
T KOG0120|consen 301 LTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGAS 371 (500)
T ss_pred cCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccch
Confidence 468899999999999976653 36899999999999999999999999999999999999965543
No 102
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.57 E-value=0.0064 Score=64.08 Aligned_cols=64 Identities=16% Similarity=0.276 Sum_probs=57.7
Q ss_pred CCHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
+++++|+..|..+|+|++|++. ..+|||||.|.+..++..|+.. +...+.|++++|++......
T Consensus 197 ~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 197 LTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred cchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 4789999999999999999843 4789999999999999999999 99999999999999986644
No 103
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=95.48 E-value=0.027 Score=58.20 Aligned_cols=62 Identities=27% Similarity=0.426 Sum_probs=56.1
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-CCCeEEEEeCCHHHHHHHHHHhcCCccC-CCcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP-SRNYSFVEFRSVDEARRAKEGLQGRLFN-DPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-SRGFAFVeF~s~EdA~kAIEaLNGk~f~-GRrIrVefAk~ 62 (724)
++++.|..+|..|.--.+|+... -++.|||+|.+...|.-|..+|+|-.+- ...++|.||++
T Consensus 158 s~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~K 221 (221)
T KOG4206|consen 158 SESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAKK 221 (221)
T ss_pred hhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccCC
Confidence 36789999999999999999776 4689999999999999999999999996 89999999874
No 104
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.35 E-value=0.024 Score=56.71 Aligned_cols=61 Identities=23% Similarity=0.296 Sum_probs=48.9
Q ss_pred HHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhc--CCccCCCcEEEEeccCC
Q 004905 3 EQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQ--GRLFNDPRITIMFSSSE 63 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLN--Gk~f~GRrIrVefAk~~ 63 (724)
.+.|+++|..|+.+..+...++=+=..|.|.+.++|.+|+..|+ |..|.|..|+|.|+...
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred HHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 47899999999999999888877778999999999999999999 99999999999999543
No 105
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=94.83 E-value=0.016 Score=64.43 Aligned_cols=46 Identities=26% Similarity=0.408 Sum_probs=39.7
Q ss_pred HHHHHHhhhcCceeEeeecCC-------------------CCeEEEEeCCHHHHHHHHHHhcCCc
Q 004905 4 QMLHNAMILFGEIERIKSYPS-------------------RNYSFVEFRSVDEARRAKEGLQGRL 49 (724)
Q Consensus 4 edLrelFS~FGeI~sVkt~~S-------------------RGFAFVeF~s~EdA~kAIEaLNGk~ 49 (724)
|.|.++|+.+|.|..|++-+. |-||||+|++.+.|.+|.+.||-..
T Consensus 246 enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e~ 310 (484)
T KOG1855|consen 246 ENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPEQ 310 (484)
T ss_pred HHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchhh
Confidence 679999999999999986432 5699999999999999999996544
No 106
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=94.82 E-value=0.03 Score=61.01 Aligned_cols=66 Identities=18% Similarity=0.203 Sum_probs=57.0
Q ss_pred CCHHHHHHHhhhcCceeEee--------------ecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004905 1 MDEQMLHNAMILFGEIERIK--------------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVk--------------t~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+++.+|.+.|..+|+|..=| +..+||=|-|+|.+.-.|+.||+.++|+.|.|..|+|.+|......
T Consensus 78 ~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~~v 157 (351)
T KOG1995|consen 78 VCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRTGV 157 (351)
T ss_pred chHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhccCc
Confidence 57888999999999995322 3468999999999999999999999999999999999999876653
No 107
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=94.65 E-value=0.037 Score=57.81 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=42.8
Q ss_pred CCHHHHHHHhhhcCceeEeeec--CCCCeEEEEeCCHHHHHHHHHHhcCCccC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY--PSRNYSFVEFRSVDEARRAKEGLQGRLFN 51 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~--~SRGFAFVeF~s~EdA~kAIEaLNGk~f~ 51 (724)
++|++|+.+|+.|--...+++. .+---|||+|++.+.|.+|+..|+|..|-
T Consensus 222 ~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 222 CTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred CCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 6899999999999877666654 33448999999999999999999987763
No 108
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=93.98 E-value=0.1 Score=57.15 Aligned_cols=65 Identities=11% Similarity=0.141 Sum_probs=56.8
Q ss_pred CCHHHHHHHhhhcCcee--------Eeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCC
Q 004905 1 MDEQMLHNAMILFGEIE--------RIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELA 65 (724)
Q Consensus 1 VdEedLrelFS~FGeI~--------sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~ 65 (724)
||.+++.++|+++|.|. .|+++ .-||=|.|.|-..|+...|++.||+..|.|+.|+|+-|+-+..
T Consensus 146 iT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~K 223 (382)
T KOG1548|consen 146 ITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAKFQMK 223 (382)
T ss_pred ccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhhhhhc
Confidence 68899999999999995 34443 4689999999999999999999999999999999999976644
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=93.90 E-value=0.12 Score=47.46 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=44.7
Q ss_pred HHHHHHhhhcCceeEee-------------ecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCc-EEEEecc
Q 004905 4 QMLHNAMILFGEIERIK-------------SYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPR-ITIMFSS 61 (724)
Q Consensus 4 edLrelFS~FGeI~sVk-------------t~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRr-IrVefAk 61 (724)
..+-+.|++||+|.+.. .....++--|+|++..+|.+|+. .||+.|+|.- |-|.|.+
T Consensus 20 ~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 20 NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEEEEE-H
T ss_pred HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEEEEEcH
Confidence 45678999999998885 34567899999999999999996 5999999864 5577764
No 110
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.70 E-value=0.15 Score=50.01 Aligned_cols=57 Identities=21% Similarity=0.314 Sum_probs=45.5
Q ss_pred HHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 4 QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 4 edLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
.+|-+.|+.||+|.=|+... +-=+|+|.+-+.|.+|+ .|+|..++|+.|+|..-.++
T Consensus 51 ~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaal-s~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAAL-SLDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHH-HGCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHH-ccCCcEECCEEEEEEeCCcc
Confidence 36788999999999888764 47799999999998887 59999999999999876644
No 111
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.45 E-value=0.051 Score=64.59 Aligned_cols=61 Identities=21% Similarity=0.280 Sum_probs=55.8
Q ss_pred HHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCcc--CCCcEEEEeccCC
Q 004905 3 EQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLF--NDPRITIMFSSSE 63 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f--~GRrIrVefAk~~ 63 (724)
-.-|.-+|+.||+|.++++.+.-..|.|+|.++|.|..|.++|+|+++ .|-+.+|.||+.-
T Consensus 312 SssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 312 SSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred HHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 346889999999999999988888999999999999999999999996 7889999999854
No 112
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=92.87 E-value=0.11 Score=62.23 Aligned_cols=63 Identities=21% Similarity=0.340 Sum_probs=57.5
Q ss_pred HHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCC--CcEEEEeccCCCC
Q 004905 3 EQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFND--PRITIMFSSSELA 65 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~G--RrIrVefAk~~~~ 65 (724)
-..|...|..||.|..|...+..-||+|.|++...|..|.+.|-|..|+| ++|+|.||....+
T Consensus 469 ~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~ 533 (975)
T KOG0112|consen 469 VSRLNREFDRFGPIRIIDYRHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPPGA 533 (975)
T ss_pred HHHHHHHhhccCcceeeecccCCcceeeecccCccchhhHHHHhcCcCCCCCcccccccccCCCC
Confidence 46788999999999999999888999999999999999999999999987 5799999976544
No 113
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.12 E-value=0.36 Score=47.90 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=44.2
Q ss_pred HHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 6 LHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 6 LrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
+..-.+.||+|.+|... +|.-|.|.|+|..+|++|+.+.+- ..-|..+++.|-
T Consensus 107 V~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 107 VIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred HHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 34567899999999865 788999999999999999999987 456777777664
No 114
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.38 E-value=0.089 Score=57.07 Aligned_cols=62 Identities=15% Similarity=0.331 Sum_probs=51.0
Q ss_pred CHHHHH--HHhhhcCceeEeeecCCC---------CeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 2 DEQMLH--NAMILFGEIERIKSYPSR---------NYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 2 dEedLr--elFS~FGeI~sVkt~~SR---------GFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+|..|+ +-|..||.|.+|.+.+.. -=++|+|.+.|+|.+||...+|..++|+.|+..|+...
T Consensus 91 de~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttk 163 (327)
T KOG2068|consen 91 DESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTK 163 (327)
T ss_pred chhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCc
Confidence 455555 579999999999865411 13799999999999999999999999999999888654
No 115
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=90.31 E-value=0.45 Score=40.54 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=34.1
Q ss_pred CHHHHHHHhhhcCcee-----EeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 2 DEQMLHNAMILFGEIE-----RIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 2 dEedLrelFS~FGeI~-----sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
+..+|-.++..-+.|. +|++. ..|+||+-... .|.++++.|++..++|++|+|+.|
T Consensus 14 ~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 14 TPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp -HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4556777777776665 44454 56999998765 699999999999999999999875
No 116
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.13 E-value=0.21 Score=57.82 Aligned_cols=62 Identities=19% Similarity=0.266 Sum_probs=54.4
Q ss_pred CHHHHHHHhh-hcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCcc---CCCcEEEEeccCC
Q 004905 2 DEQMLHNAMI-LFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLF---NDPRITIMFSSSE 63 (724)
Q Consensus 2 dEedLrelFS-~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f---~GRrIrVefAk~~ 63 (724)
|.-.|++|.. ..|.|++.++.+=|..+||.|.++++|..-+.+|||..+ +++.|-|+|+..+
T Consensus 457 TlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~d 522 (718)
T KOG2416|consen 457 TLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRAD 522 (718)
T ss_pred hHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchh
Confidence 5678999998 677888888777788999999999999999999999998 7788999999754
No 117
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=87.69 E-value=0.42 Score=54.23 Aligned_cols=65 Identities=25% Similarity=0.306 Sum_probs=53.6
Q ss_pred CHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCCC
Q 004905 2 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAPG 67 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~pg 67 (724)
|-++|...|..||+|.+|.+.-+---|.|+|.+..+|-+|. ...|..|+||-|||-|=+....-+
T Consensus 386 t~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~-~s~~avlnnr~iKl~whnps~~tn 450 (526)
T KOG2135|consen 386 TIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAY-ASHGAVLNNRFIKLFWHNPSPVTN 450 (526)
T ss_pred hHhhhhhhhhhcCccccccccCchhhheeeeeccccccchh-ccccceecCceeEEEEecCCcccC
Confidence 34789999999999999997655457899999999996664 468999999999999988755433
No 118
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.93 E-value=0.96 Score=49.25 Aligned_cols=51 Identities=16% Similarity=0.291 Sum_probs=43.5
Q ss_pred HHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcE
Q 004905 4 QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRI 55 (724)
Q Consensus 4 edLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrI 55 (724)
..|-++|++||+|.+......-.+-.|.|.+..+|++|+. -||++|+|..+
T Consensus 211 s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALs-kng~ii~g~vm 261 (350)
T KOG4285|consen 211 SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVM 261 (350)
T ss_pred hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhh-hcCeeeccceE
Confidence 3567899999999988876445699999999999999996 59999998764
No 119
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=86.52 E-value=0.33 Score=51.56 Aligned_cols=53 Identities=26% Similarity=0.363 Sum_probs=43.8
Q ss_pred CHHHHHHHhhhcCceeEeeecCC------------C------CeEEEEeCCHHHHHHHHHHhcCCccCCCc
Q 004905 2 DEQMLHNAMILFGEIERIKSYPS------------R------NYSFVEFRSVDEARRAKEGLQGRLFNDPR 54 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~S------------R------GFAFVeF~s~EdA~kAIEaLNGk~f~GRr 54 (724)
+-.-||++|+.||+|-+|.+.+. + -=|.|+|.+-..|.+..+.|||..|+|++
T Consensus 87 ~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 87 DPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred CHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 34579999999999999975421 1 12789999999999999999999999975
No 120
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=84.85 E-value=1.5 Score=52.01 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=47.1
Q ss_pred CCHHHHHHHhhhcCcee-Eeee-----cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEe
Q 004905 1 MDEQMLHNAMILFGEIE-RIKS-----YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 59 (724)
Q Consensus 1 VdEedLrelFS~FGeI~-sVkt-----~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVef 59 (724)
|+-+|+-+.|.-|-.+- +|.+ ....|=+-|-|++.|||.+|.+.|+|+.|.+|+|++..
T Consensus 879 v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 879 VTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred ccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34567778888886663 3332 23568999999999999999999999999999999864
No 121
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=83.71 E-value=1.6 Score=49.80 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=47.6
Q ss_pred CCHHHHHHHhhhcCceeEeee----cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 1 MDEQMLHNAMILFGEIERIKS----YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt----~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
+||+||++.|+-++ |+++.+ .+..|=|||+|++.||+++|++. |-+.+..|=|-|=-+...
T Consensus 22 at~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 22 ATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGGA 86 (510)
T ss_pred ccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCCc
Confidence 48999999999986 666653 45679999999999999999874 555666677777666444
No 122
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=79.92 E-value=0.54 Score=56.62 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=54.6
Q ss_pred CCHHHHHHHhhhcCceeEeeecC-----CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP-----SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~-----SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
+++.+|+.+|..||.|++|.+.. .-.||||.|.+...|-.|+-+|.|..|..-.+++.+...
T Consensus 384 l~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~ 450 (975)
T KOG0112|consen 384 LTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP 450 (975)
T ss_pred hhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc
Confidence 57889999999999999998542 235999999999999999999999999888888888854
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=79.82 E-value=1 Score=54.10 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=58.3
Q ss_pred CHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004905 2 DEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
|.++|+.+|+.+|.++++++. +.+|-|||.|.+..+|.++...+++..++-+.+.|.-+++.+..
T Consensus 749 t~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~~~K 818 (881)
T KOG0128|consen 749 TKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPERDK 818 (881)
T ss_pred chHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCcccc
Confidence 678999999999999998743 57899999999999999999999999999999999998875544
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=77.80 E-value=0.64 Score=55.71 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=44.5
Q ss_pred CHHHHHHHhhhcCceeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccC
Q 004905 2 DEQMLHNAMILFGEIERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFN 51 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~ 51 (724)
.+++|+..|++||.|+.|.+. +-||+|||+|.+.++|.+|++-.++..++
T Consensus 680 ~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 680 SEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred cCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 478999999999999888643 57899999999999999999999988877
No 125
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=73.82 E-value=6.7 Score=33.98 Aligned_cols=53 Identities=19% Similarity=0.315 Sum_probs=41.8
Q ss_pred CHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEE
Q 004905 2 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 57 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrV 57 (724)
+-++++..+..|+-. +|... ..|| ||.|.+.+||+++.++.||+.+.+-+|.+
T Consensus 13 ~v~d~K~~Lr~y~~~-~I~~d-~tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 13 TVEDFKKRLRKYRWD-RIRDD-RTGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred cHHHHHHHHhcCCcc-eEEec-CCEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 457788888888753 34432 3466 89999999999999999999999888765
No 126
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=69.47 E-value=5.2 Score=46.44 Aligned_cols=43 Identities=16% Similarity=0.324 Sum_probs=35.2
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhcCCcc---C-CCcEEEEeccCCCC
Q 004905 23 PSRNYSFVEFRSVDEARRAKEGLQGRLF---N-DPRITIMFSSSELA 65 (724)
Q Consensus 23 ~SRGFAFVeF~s~EdA~kAIEaLNGk~f---~-GRrIrVefAk~~~~ 65 (724)
...|||||.|.+.+++..+.++.||+.+ + .+...|.||+-...
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQGk 475 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQGK 475 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhhch
Confidence 3569999999999999999999999986 3 35577888875543
No 127
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=66.50 E-value=13 Score=34.29 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=35.2
Q ss_pred HHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhc
Q 004905 3 EQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQ 46 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLN 46 (724)
-.||.++|++||.|.=-.+ .-.=|||...+.+.|..|+..++
T Consensus 22 ~~DI~qlFspfG~I~VsWi--~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 22 TSDIYQLFSPFGQIYVSWI--NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHHHHCCCCCCEEEEEE--CTTEEEEEECCCHHHHHHHHHHT
T ss_pred hhhHHHHhccCCcEEEEEE--cCCcEEEEeecHHHHHHHHHHhc
Confidence 4689999999999964444 24579999999999999999996
No 128
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=64.81 E-value=4.3 Score=48.11 Aligned_cols=56 Identities=27% Similarity=0.603 Sum_probs=40.1
Q ss_pred eEEEEeCC--CchhhhhHHHHHHhhccccccceEeecCCcEEEEeCCChhhhcceeecCCccEEEEEeecC
Q 004905 332 DIVFFLPD--SEDDFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFLSKVLKVVGPERLYGVVLKLP 400 (724)
Q Consensus 332 ~vvff~P~--s~~D~~~y~eFl~YL~~K~rAgV~K~~~~ttLFLVPPSdf~~~vLkV~g~e~l~gvvL~l~ 400 (724)
.|-.|-|- -..||..|.++|.=+|.| |||+||| |||.++.....+= .|.-|+++.|
T Consensus 14 ~I~tF~PtmeEF~dF~~yi~~IEs~G~h-~aGlaKV--------ipPkeWk~r~~~~----di~di~I~~P 71 (690)
T KOG0958|consen 14 GIPTFYPTMEEFADFSAYIAYIESQGAH-RAGLAKV--------IPPKEWKPRLMYD----DIDDIKIPAP 71 (690)
T ss_pred CcceeCcCHHHHHhHHHHHHHHHhccch-hcCeeee--------eCCccCCcccccC----chhheecChh
Confidence 34455553 346788888888888888 9999997 8999887765443 5566666666
No 129
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=63.31 E-value=6.7 Score=50.09 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=26.2
Q ss_pred CCCCCCCCCCCCCccC------CCCCCccCCCccccccccccCCCCcCCCC
Q 004905 570 QQGMVYSRPLPNFSIA------PQAAPVAVSPPVHQQYQFAAPSNSQKGYG 614 (724)
Q Consensus 570 ~~~~~~s~p~~~~~~p------sq~g~~~~s~~~~qqyq~e~~~~~q~~yg 614 (724)
..++..+.|++...|| ++++.+.+.|+-+.|--|..+-+.|.-=|
T Consensus 1995 a~g~~~~m~p~g~~mp~~qs~q~~~~~~~l~p~~~~q~~ps~~~~~q~m~~ 2045 (2220)
T KOG3598|consen 1995 AMGNTSSMPPSGPPMPMGQSMQSAGATQQLQPMQKHQMGPSMSGMNQNMGG 2045 (2220)
T ss_pred ccCCCCCcCCCCCCCCcccccccCCCceecCchHhhccCCcccccccchhh
Confidence 3445555555555555 44555666666666666666666666433
No 130
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=63.05 E-value=10 Score=43.67 Aligned_cols=59 Identities=17% Similarity=0.102 Sum_probs=43.8
Q ss_pred CCHHHHHHHhhhcCceeE-eee-----cCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 1 MDEQMLHNAMILFGEIER-IKS-----YPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI~s-Vkt-----~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
++|+||.+.|+--=-|.+ |-+ .++-|=|||.|++.|.|++|+..-. +.|+-|=|-|--|
T Consensus 115 cte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhr-e~iGhRYIEvF~S 179 (510)
T KOG4211|consen 115 CTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHR-ENIGHRYIEVFRS 179 (510)
T ss_pred CcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHH-HhhccceEEeehh
Confidence 689999999998866665 221 2456899999999999999987643 4555566766554
No 131
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.55 E-value=7.6 Score=39.97 Aligned_cols=61 Identities=16% Similarity=0.220 Sum_probs=48.7
Q ss_pred HHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCC-cEEEEeccCCC
Q 004905 4 QMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDP-RITIMFSSSEL 64 (724)
Q Consensus 4 edLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GR-rIrVefAk~~~ 64 (724)
....++|..|-+..-...+++.++--|.|.+.+.|.+|.-.++++.|+|+ .++.-||....
T Consensus 30 ~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 30 ALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGH 91 (193)
T ss_pred HHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCC
Confidence 34567777666655555667777777899999999999999999999999 89988886543
No 132
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=60.70 E-value=7.4 Score=44.42 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=45.5
Q ss_pred CHHHHHHHhhhcCceeEee-ecCCCCeEEEEeCCHHHHHHHHHHhcCCc-cCCCcEEEEeccCCC
Q 004905 2 DEQMLHNAMILFGEIERIK-SYPSRNYSFVEFRSVDEARRAKEGLQGRL-FNDPRITIMFSSSEL 64 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVk-t~~SRGFAFVeF~s~EdA~kAIEaLNGk~-f~GRrIrVefAk~~~ 64 (724)
+-.+|+.+|..- +|---. ..-.-|||||...+..-|-+|++.++|+. +.|+++.|+++-.+.
T Consensus 14 ~psdl~svfg~a-k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kk 77 (584)
T KOG2193|consen 14 TPSDLESVFGDA-KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKK 77 (584)
T ss_pred ChHHHHHHhccc-cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHH
Confidence 456777776544 111001 12245899999999999999999999986 799999999986543
No 133
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=55.75 E-value=10 Score=40.77 Aligned_cols=53 Identities=26% Similarity=0.341 Sum_probs=42.4
Q ss_pred CCHHHHHHHhhhcCceeEeeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCC
Q 004905 1 MDEQMLHNAMILFGEIERIKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDP 53 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GR 53 (724)
|.-+.|++.|+.||+|++..+. +.-+=++|+|...-.|.+|++.++-.-|.+.
T Consensus 43 ~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~ 100 (275)
T KOG0115|consen 43 ASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGT 100 (275)
T ss_pred hhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccC
Confidence 3567899999999999865432 4456889999999999999999976666554
No 134
>cd00594 KU Ku-core domain; includes the central DNA-binding beta-barrels, polypeptide rings, and the C-terminal arm of Ku proteins. The Ku protein consists of two tightly associated homologous subunits, Ku70 and Ku80, and was originally identified as an autoantigen recognized by the sera of patients with an autoimmunity disease. In eukaryotes, the Ku heterodimer contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by non-homologous end-joining. The bacterial Ku homologs does not contain the conserved N-terminal extension that is present in the eukaryotic Ku protein.
Probab=50.65 E-value=24 Score=36.17 Aligned_cols=72 Identities=19% Similarity=0.335 Sum_probs=52.6
Q ss_pred hhHHHHHhhhccCceEEEEeCCC--chhhhhHHHHHHhhccccccceEeecC-----CcEEEEeCCChhhhcceeecCCc
Q 004905 318 LDMLAKHYAEAIGFDIVFFLPDS--EDDFASYTEFLRYLGSKNRAGVAKFDD-----GTTLFLVPPSDFLSKVLKVVGPE 390 (724)
Q Consensus 318 ld~l~khy~~a~~~~vvff~P~s--~~D~~~y~eFl~YL~~K~rAgV~K~~~-----~ttLFLVPPSdf~~~vLkV~g~e 390 (724)
.+.|.-+|... +..|++|+. ..+.+.|.-+++-|.+++++|||++-- .++..|+|.-+. ..+
T Consensus 99 ~~~i~~~~~~~---~s~~l~P~~~~~~s~~af~aL~~am~~~~kvai~r~v~r~~~~p~l~aL~P~~~~--------~~~ 167 (272)
T cd00594 99 ASEIPPYYFDK---ESYYLVPDDSDKGSEKAFSALRRALLEKDKVAIARYVLRRNSRPRLVALRPQEEE--------DPE 167 (272)
T ss_pred hHhCCcceecC---CcEEEEcCCCCcccHHHHHHHHHHHHHcCcEEEEEEEEcCCCCcEEEEEeccccC--------CCC
Confidence 33444444433 567888998 588899999999999999999999752 267777776553 556
Q ss_pred cEEEEEeecC
Q 004905 391 RLYGVVLKLP 400 (724)
Q Consensus 391 ~l~gvvL~l~ 400 (724)
+|+-+-|+|.
T Consensus 168 gl~l~~LPfa 177 (272)
T cd00594 168 GLVLVTLPFA 177 (272)
T ss_pred EEEEEccCCc
Confidence 7777766665
No 135
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=42.31 E-value=14 Score=31.28 Aligned_cols=67 Identities=21% Similarity=0.258 Sum_probs=45.4
Q ss_pred eeccCCcceeeeEeeec-cccccccCCceeecccccchhHHHHHhhhccCceEEEEeCCCchhhhhHHHHHHhhc
Q 004905 282 IIAKGGTPVCRARCVPF-GKGIESELPEVVNCSARTGLDMLAKHYAEAIGFDIVFFLPDSEDDFASYTEFLRYLG 355 (724)
Q Consensus 282 ~iAKgG~pvC~arC~~~-gk~~~~~~P~~ldctaRT~ld~l~khy~~a~~~~vvff~P~s~~D~~~y~eFl~YL~ 355 (724)
...|.|-|+|+.-.... ..+++++ .+|+..+.....+++.+ ....+-++|+ + ..-+.+|.|++.||.
T Consensus 12 ly~~~~Cp~C~~ak~~L~~~gi~y~---~idi~~~~~~~~~~~~~-g~~~vP~i~i--~-g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 12 VFTKPGCPFCAKAKATLKEKGYDFE---EIPLGNDARGRSLRAVT-GATTVPQVFI--G-GKLIGGSDELEAYLA 79 (79)
T ss_pred EEECCCCHhHHHHHHHHHHcCCCcE---EEECCCChHHHHHHHHH-CCCCcCeEEE--C-CEEEcCHHHHHHHhC
Confidence 46788999998876665 4555555 48888776655555543 3344566654 3 344899999999984
No 136
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=42.29 E-value=10 Score=41.53 Aligned_cols=49 Identities=24% Similarity=0.411 Sum_probs=36.1
Q ss_pred CHHHHHHHhhhcCceeEeeec----------------CCCCeE---------EEEeCCHHHHHHHHHHhcCCcc
Q 004905 2 DEQMLHNAMILFGEIERIKSY----------------PSRNYS---------FVEFRSVDEARRAKEGLQGRLF 50 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~----------------~SRGFA---------FVeF~s~EdA~kAIEaLNGk~f 50 (724)
+|+-|+.+|..||+|..|.+- .-.||+ ||.|.+...-..|+++|.|..+
T Consensus 174 se~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 174 SEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred hHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchH
Confidence 578899999999999988631 124554 4677777777778888887654
No 137
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=40.20 E-value=47 Score=34.86 Aligned_cols=49 Identities=18% Similarity=0.178 Sum_probs=42.2
Q ss_pred HHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCC
Q 004905 3 EQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFND 52 (724)
Q Consensus 3 EedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~G 52 (724)
=++|++.+.+-|+|--..+.+ -|++.|+|...||.+=|+..|+...+.-
T Consensus 129 WQDLKDHmReaGdvCfadv~r-Dg~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 129 WQDLKDHMREAGDVCFADVQR-DGVGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred hHHHHHHHHhhCCeeeeeeec-ccceeeeeeehhhHHHHHHhhccccccC
Confidence 379999999999996666653 4799999999999999999999988843
No 138
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=39.78 E-value=19 Score=35.07 Aligned_cols=26 Identities=46% Similarity=0.853 Sum_probs=20.0
Q ss_pred hhHHHHHHhhccccccceEeecCC-cEEEE
Q 004905 345 ASYTEFLRYLGSKNRAGVAKFDDG-TTLFL 373 (724)
Q Consensus 345 ~~y~eFl~YL~~K~rAgV~K~~~~-ttLFL 373 (724)
.++++|+.||| |.|.||+|+. .-|||
T Consensus 62 ~sLT~FvkyLg---r~G~~~Vdetekg~~I 88 (127)
T PF10357_consen 62 TSLTEFVKYLG---REGKCKVDETEKGWFI 88 (127)
T ss_dssp SSHHHHHHHHT---TTTSEEEEEETTEEEE
T ss_pred chHHHHHHHHh---hCCeeEeecCCCceEE
Confidence 68999999998 6799998853 34443
No 139
>PF02735 Ku: Ku70/Ku80 beta-barrel domain; InterPro: IPR006164 The Ku heterodimer is composed of Ku70 and Ku80 (or Ku86), 70 kDa and 80 kDa subunits of an ATP-dependent DNA helicase, which contributes to genomic integrity through its ability to bind DNA double-stranded breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-binding beta-barrel domain and is found in both the Ku70 and Ku80 proteins. Ku makes only a few contacts with the sugar-phosphate backbone, and none with the DNA bases, but it fits sterically to major and minor groove contours forming a ring that encircles duplex DNA, cradling two full turns of the DNA molecule. By forming a bridge between the broken DNA ends, Ku acts to structurally support and align the DNA ends, to protect them from degradation, and to prevent promiscuous binding to unbroken DNA. Ku effectively aligns the DNA, while still allowing access of polymerases, nucleases and ligases to the broken DNA ends to promote end joining [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0006303 double-strand break repair via nonhomologous end joining; PDB: 1JEY_B 1JEQ_B.
Probab=39.64 E-value=43 Score=33.08 Aligned_cols=61 Identities=20% Similarity=0.353 Sum_probs=44.0
Q ss_pred EEEeCCCchh---hhhHHHHHHhhccccccceEeecCC-----cEEEEeCCChhhhcceeecCCccEEEEEeecC
Q 004905 334 VFFLPDSEDD---FASYTEFLRYLGSKNRAGVAKFDDG-----TTLFLVPPSDFLSKVLKVVGPERLYGVVLKLP 400 (724)
Q Consensus 334 vff~P~s~~D---~~~y~eFl~YL~~K~rAgV~K~~~~-----ttLFLVPPSdf~~~vLkV~g~e~l~gvvL~l~ 400 (724)
.|++|+.... ...|.-+++=|.+++++|||++--. ++..|+|--+.. ..+++|+-+-|+|.
T Consensus 106 ~~i~p~~~~~~~s~~~f~aL~~am~~~~~vaI~r~v~r~~~~p~l~aL~P~~~~~------~~~~gl~~~~Lpf~ 174 (200)
T PF02735_consen 106 YFIVPDEKSGEGSAKAFSALVQAMLEKNKVAIARYVLRSNSRPRLVALIPQIEES------DTPEGLVLIRLPFA 174 (200)
T ss_dssp EEEEEETTTECCHHHHHHHHHHHHHHCTEEEEEEEESSTTS--EEEEEEEEE-CE------EC-CEEEEEE---G
T ss_pred EEEEECCCCcchhHHHHHHHHHHHHhcCcEEEEEEEEcCCCCcEEEEEEEecccc------CCCCeEEEEEcCCh
Confidence 4677777666 6789999999999999999997532 677788866533 44588888888876
No 140
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=37.55 E-value=40 Score=35.21 Aligned_cols=32 Identities=22% Similarity=0.158 Sum_probs=24.8
Q ss_pred EEEEeCCHHHHHHHHHHhcCCccCCCcEEEEecc
Q 004905 28 SFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSS 61 (724)
Q Consensus 28 AFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk 61 (724)
|||+|++.++|..|.+.+....- ++++|..|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeCC
Confidence 79999999999999997766553 445666554
No 141
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=37.28 E-value=22 Score=40.35 Aligned_cols=38 Identities=18% Similarity=0.350 Sum_probs=33.4
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 23 PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 23 ~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
+.-|=|||+|++.|+|..|....+.+..+.|-|.|--+
T Consensus 322 rPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 322 RPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred CcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 45689999999999999999999999998888887554
No 142
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=37.03 E-value=44 Score=38.99 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=41.3
Q ss_pred CCHHHHHHHhhhcCceeEee--------ecCCCC---eEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccC
Q 004905 1 MDEQMLHNAMILFGEIERIK--------SYPSRN---YSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSS 62 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVk--------t~~SRG---FAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~ 62 (724)
|+|++|.+.|..||.|.-=. ..+.+| |+|.-|+++.....-+.+. .++...+.+..+.+
T Consensus 271 ise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC---~~~~~~~yf~vss~ 340 (520)
T KOG0129|consen 271 ITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC---SEGEGNYYFKVSSP 340 (520)
T ss_pred ccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH---hhcccceEEEEecC
Confidence 68999999999999985221 235678 9999999887665544443 33566666555543
No 143
>cd00789 KU_like Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.
Probab=35.83 E-value=1e+02 Score=32.73 Aligned_cols=75 Identities=19% Similarity=0.238 Sum_probs=52.6
Q ss_pred eeecccccchhHHHHHhhhccCceEEEEeCCCchhhhhHHHHHHhhccccccceEeec---CCcEEEEeCCChhhhccee
Q 004905 309 VVNCSARTGLDMLAKHYAEAIGFDIVFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFD---DGTTLFLVPPSDFLSKVLK 385 (724)
Q Consensus 309 ~ldctaRT~ld~l~khy~~a~~~~vvff~P~s~~D~~~y~eFl~YL~~K~rAgV~K~~---~~ttLFLVPPSdf~~~vLk 385 (724)
.|++--=++.+-|..+|+..+ .|+.|+. ..-+.|.-+.+=|.+.+++||+++- ..+...|+|.-
T Consensus 88 ~i~IlgFv~~~~I~~~y~~~s----yyl~P~~-~~~kaf~~L~~Al~~~~kvaIar~V~r~~~~l~aL~P~~-------- 154 (256)
T cd00789 88 TIEIVDFVPLDEIDPIYFDKP----YYLAPDK-GGEKAYALLREALRDTGKVAIAKVVLRTRERLAALRPRG-------- 154 (256)
T ss_pred eEEEEeEeCHHHCCHhHcCCC----EEEecCC-CcchHHHHHHHHHHHcCCEEEEEEEEcCCceEEEEEECC--------
Confidence 334433344455555777533 6788988 5567999999999999999999984 33556666642
Q ss_pred ecCCccEEEEEeecC
Q 004905 386 VVGPERLYGVVLKLP 400 (724)
Q Consensus 386 V~g~e~l~gvvL~l~ 400 (724)
++|+-+.|+++
T Consensus 155 ----~gL~l~~Lpfa 165 (256)
T cd00789 155 ----KGLVLNTLRYP 165 (256)
T ss_pred ----CEEEEEECCCh
Confidence 57887777776
No 144
>TIGR02772 Ku_bact Ku protein, prokaryotic. Members of this protein family are Ku proteins of non-homologous end joining (NHEJ) DNA repair in bacteria and in at least one member of the archaea (Archaeoglobus fulgidus). Most members are encoded by a gene adjacent to the gene for the DNA ligase that completes the repair. The NHEJ system is broadly but rather sparsely distributed, being present in about one fifth of the first 250 completed prokarytotic genomes. A few species (e.g. Archaeoglobus fulgidus and Bradyrhizobium japonicum) have multiple copies that appear to represent recent paralogous family expansion.
Probab=35.49 E-value=70 Score=33.89 Aligned_cols=76 Identities=20% Similarity=0.300 Sum_probs=50.6
Q ss_pred eeecccccchhHHHHHhhhccCceEEEEeCCCchhhhhHHHHHHhhccccccceEeec--CCcEEEEeCCChhhhcceee
Q 004905 309 VVNCSARTGLDMLAKHYAEAIGFDIVFFLPDSEDDFASYTEFLRYLGSKNRAGVAKFD--DGTTLFLVPPSDFLSKVLKV 386 (724)
Q Consensus 309 ~ldctaRT~ld~l~khy~~a~~~~vvff~P~s~~D~~~y~eFl~YL~~K~rAgV~K~~--~~ttLFLVPPSdf~~~vLkV 386 (724)
.|++-.=++.+-|..+|.+.+ .|+.|+ ..--+.|.-+.+=|.+.+++||+|+- .+..|.+|=|++
T Consensus 89 ~i~I~gFv~~~~i~~~y~~~s----yyl~P~-~~~~~a~~~L~~Al~~~~kvaIar~v~r~r~~l~aL~P~~-------- 155 (258)
T TIGR02772 89 TIEIEAFVDADEIDPIYFDTP----YYLAPD-KGGEKAYALLREALEDTGKVGIAKVVLRGRERLAALRPVG-------- 155 (258)
T ss_pred eEEEEEEeCHHHCChheeCCC----EEEccC-CCchHHHHHHHHHHHHcCCEEEEEEEEcCCcEEEEEEECC--------
Confidence 344433344444445565433 788898 45567999999999999999999974 333444444443
Q ss_pred cCCccEEEEEeecC
Q 004905 387 VGPERLYGVVLKLP 400 (724)
Q Consensus 387 ~g~e~l~gvvL~l~ 400 (724)
++|+.+.|+|+
T Consensus 156 ---~gL~l~~Lpfa 166 (258)
T TIGR02772 156 ---KGLVLTTLRYP 166 (258)
T ss_pred ---CeEEEEECCCh
Confidence 37877777776
No 145
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=33.86 E-value=41 Score=39.79 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=36.3
Q ss_pred HHHHHHHhhh--cCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcC--CccCCCcEE
Q 004905 3 EQMLHNAMIL--FGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQG--RLFNDPRIT 56 (724)
Q Consensus 3 EedLrelFS~--FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNG--k~f~GRrIr 56 (724)
+|+++.||+- +-++++|...-.-+. ||+|++.+||..|...|.. ++|-|++|.
T Consensus 189 ~e~Vk~lf~~encPk~iscefa~N~nW-yITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 189 IEVVKALFKGENCPKVISCEFAHNDNW-YITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred HHHHHHHhccCCCCCceeeeeeecCce-EEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4666777754 455566654433333 8999999999999888765 357777665
No 146
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=32.56 E-value=1.3e+02 Score=28.38 Aligned_cols=50 Identities=30% Similarity=0.432 Sum_probs=35.7
Q ss_pred HHHHHHhhhcCc-eeEeeec----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCC
Q 004905 4 QMLHNAMILFGE-IERIKSY----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDP 53 (724)
Q Consensus 4 edLrelFS~FGe-I~sVkt~----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GR 53 (724)
++|....+.+-+ |+.+++. +.|=-+.++|++.++|++=.++.||+.|+--
T Consensus 28 d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fnsl 82 (110)
T PF07576_consen 28 DFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSL 82 (110)
T ss_pred HHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCC
Confidence 345444444433 4455544 3455788999999999999999999999763
No 147
>smart00559 Ku78 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen. This is a single stranded DNA- and ATP-depedent helicase that has a role in chromosome translocation. This is a domain of unknown function C-terminal to its von Willebrand factor A domain, that also occurs in bacterial hypothetical proteins.
Probab=30.84 E-value=98 Score=29.48 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=51.3
Q ss_pred chhHHHHHhhhccCceEEEEeCCCch---hhhhHHHHHHhhccccccceEeec--C---CcEEEEeCCChhhhcceeecC
Q 004905 317 GLDMLAKHYAEAIGFDIVFFLPDSED---DFASYTEFLRYLGSKNRAGVAKFD--D---GTTLFLVPPSDFLSKVLKVVG 388 (724)
Q Consensus 317 ~ld~l~khy~~a~~~~vvff~P~s~~---D~~~y~eFl~YL~~K~rAgV~K~~--~---~ttLFLVPPSdf~~~vLkV~g 388 (724)
..+-|.-+|... +..|++|+... ..+.|.-+.+=|.+++++|||++- + .+...|+|..+.. .
T Consensus 45 ~~~~i~~~~~~~---~s~~i~P~~~~~~~s~~a~~aL~~am~~~~~~aiar~v~r~~~~p~l~aL~P~~~~~-------~ 114 (140)
T smart00559 45 PLSSLPPYYFLR---PSYFLVPDDKSVIGSTKAFSALVEALLETDKIAIARYTLRTKSNPRLVALRPYDEED-------D 114 (140)
T ss_pred ChHHCCHhHccC---CcEEEeeCCcccchhHHHHHHHHHHHHhcCCEEEEEEEEcCCCCCEEEEEEeeeccc-------C
Confidence 334444455532 45677888765 678999999999999999999974 2 3667777754411 1
Q ss_pred CccEEEEEeecC
Q 004905 389 PERLYGVVLKLP 400 (724)
Q Consensus 389 ~e~l~gvvL~l~ 400 (724)
.++|+-+-|+|.
T Consensus 115 ~~~l~~~~Lpfa 126 (140)
T smart00559 115 GEGLVLVQLPFA 126 (140)
T ss_pred CCcEEEEecCCc
Confidence 258888888776
No 148
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=30.57 E-value=39 Score=38.54 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=44.4
Q ss_pred CCHHHHHHHhhhcCceeEeeecC---------CCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 1 MDEQMLHNAMILFGEIERIKSYP---------SRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 1 VdEedLrelFS~FGeI~sVkt~~---------SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
++.++++.||.-.|+|.++++++ ..--+||.|.|...+.-| ..|-...|-|+.|-|...
T Consensus 19 at~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~va-QhLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 19 ATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVA-QHLTNTVFVDRALIVRPY 86 (479)
T ss_pred hhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHH-hhhccceeeeeeEEEEec
Confidence 35688999999999999999764 234899999999877665 456666676776655443
No 149
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=30.49 E-value=1.9e+02 Score=24.05 Aligned_cols=42 Identities=26% Similarity=0.188 Sum_probs=32.5
Q ss_pred HHHHHHhhhcCceeEeeecCC--CCeEEEEeCCHHHHHHHHHHhc
Q 004905 4 QMLHNAMILFGEIERIKSYPS--RNYSFVEFRSVDEARRAKEGLQ 46 (724)
Q Consensus 4 edLrelFS~FGeI~sVkt~~S--RGFAFVeF~s~EdA~kAIEaLN 46 (724)
+++.++...+| +.-.++.-+ -++.|+-+.+.++|+++++.|.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677788999 555555445 6799999999999999998874
No 150
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=29.95 E-value=4.7e+02 Score=31.11 Aligned_cols=38 Identities=5% Similarity=0.044 Sum_probs=32.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCC
Q 004905 25 RNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSE 63 (724)
Q Consensus 25 RGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~ 63 (724)
..|.||+-.. +.|.+.++.|++..+.|++|.|+.++..
T Consensus 526 ~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 526 ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 5699999875 4599999999999999999999998633
No 151
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.95 E-value=1.3e+02 Score=36.07 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=28.2
Q ss_pred eEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEe
Q 004905 27 YSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 59 (724)
Q Consensus 27 FAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVef 59 (724)
||.|+|.+++.|..-.++.+|.+|...-.+++.
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 899999999999999999999999765555443
No 152
>cd00788 KU70 Ku-core domain, Ku70 subfamily; Ku70 is a subunit of the Ku protein, which plays a key role in multiple nuclear processes such as DNA repair, chromosome maintenance, transcription regulation, and V(D)J recombination. The mechanism underlying the regulation of all the diverse functions of Ku is still unclear, although it seems that Ku is a multifunctional protein that works in the nuclei. In mammalian cells, the Ku heterodimer recruits the catalytic subunit of DNA-dependent protein kinase (DNA-PK), which is dependent on its association with the Ku70/80 heterodimer bound to DNA for its protein kinase activity.
Probab=27.67 E-value=1.3e+02 Score=31.78 Aligned_cols=89 Identities=18% Similarity=0.126 Sum_probs=53.2
Q ss_pred eeecccccchhHHHHHhhhccCceEEEEeCCCc---hhhhhHHHHHHhhccccccceEeec-----CCcEEEEeCCChhh
Q 004905 309 VVNCSARTGLDMLAKHYAEAIGFDIVFFLPDSE---DDFASYTEFLRYLGSKNRAGVAKFD-----DGTTLFLVPPSDFL 380 (724)
Q Consensus 309 ~ldctaRT~ld~l~khy~~a~~~~vvff~P~s~---~D~~~y~eFl~YL~~K~rAgV~K~~-----~~ttLFLVPPSdf~ 380 (724)
.|++--=++.+-|.-+|+.. .-.|++|+.. .....|.-+++-|.+++++|||++- ..+...|+|-....
T Consensus 96 ~l~ilgF~~~~~i~~~~~~~---~s~fl~P~~~~~~gs~~af~aL~~am~~~~kvaIa~~v~r~~~~p~l~aL~P~~~~~ 172 (287)
T cd00788 96 GLRLIGFKPRSTLKPYHNIK---KSYFIYPDESDYKGSTRLFAALLRSCLKKNKVAICWYILRKNSPPRLVALVPQEEEL 172 (287)
T ss_pred ceEEEeeccHHHCChhhccC---CceeEecCcccccCcHHHHHHHHHHHHhcCcEEEEEEEecCCCCCEEEEEecccccc
Confidence 33333333344444444432 3568888873 5678999999999999999999974 23677777753311
Q ss_pred hcceeecCCccEEEEEeecC
Q 004905 381 SKVLKVVGPERLYGVVLKLP 400 (724)
Q Consensus 381 ~~vLkV~g~e~l~gvvL~l~ 400 (724)
..--..--..+|+-+-|+|.
T Consensus 173 ~~~~~~~~~~gl~l~~LPfa 192 (287)
T cd00788 173 DEPDGQVLPPGFHLVPLPFA 192 (287)
T ss_pred CCCCCccCCCcEEEEecCch
Confidence 10000001457777666655
No 153
>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit. E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis.
Probab=27.18 E-value=20 Score=29.67 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=19.4
Q ss_pred hcCceeEeeecCCCCeEEEEeCCHH
Q 004905 12 LFGEIERIKSYPSRNYSFVEFRSVD 36 (724)
Q Consensus 12 ~FGeI~sVkt~~SRGFAFVeF~s~E 36 (724)
--|.|.+++. ..+|+||++.+|..
T Consensus 4 v~g~v~~i~~-tk~g~~~~~L~D~~ 27 (78)
T cd04489 4 VEGEISNLKR-PSSGHLYFTLKDED 27 (78)
T ss_pred EEEEEecCEE-CCCcEEEEEEEeCC
Confidence 3588999987 56789999998765
No 154
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=27.04 E-value=65 Score=36.48 Aligned_cols=56 Identities=18% Similarity=0.256 Sum_probs=45.0
Q ss_pred CHHHHHHHhhhcCc--eeEeeec------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEE
Q 004905 2 DEQMLHNAMILFGE--IERIKSY------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITI 57 (724)
Q Consensus 2 dEedLrelFS~FGe--I~sVkt~------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrV 57 (724)
|++||-++.-.-|. |.++|.+ .+||||.|-..+..+.++-+|-|--++|.|..-.|
T Consensus 93 TD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 93 TDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred ccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 67788888777664 4455543 68999999999999999999999999999876554
No 155
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=26.31 E-value=86 Score=27.46 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.5
Q ss_pred HHHHHHhhhcCceeEee
Q 004905 4 QMLHNAMILFGEIERIK 20 (724)
Q Consensus 4 edLrelFS~FGeI~sVk 20 (724)
++||+.|+..|+|.-+.
T Consensus 9 ~~iR~~fs~lG~I~vLY 25 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLY 25 (62)
T ss_pred HHHHHHHHhcCcEEEEE
Confidence 58999999999997554
No 156
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=26.14 E-value=58 Score=26.15 Aligned_cols=28 Identities=29% Similarity=0.511 Sum_probs=16.7
Q ss_pred hhhhHHHHHHhhccccccceEeecCCcEEEEeCCChhh
Q 004905 343 DFASYTEFLRYLGSKNRAGVAKFDDGTTLFLVPPSDFL 380 (724)
Q Consensus 343 D~~~y~eFl~YL~~K~rAgV~K~~~~ttLFLVPPSdf~ 380 (724)
|+-.|.+-|+-+ -.+.|+||| |||.+|.
T Consensus 14 Dp~~yi~~i~~~--~~~yGi~KI--------vPP~~w~ 41 (42)
T smart00545 14 DPLAYISKIRPQ--AEKYGICKV--------VPPKSWK 41 (42)
T ss_pred CHHHHHHHHHHH--HhhCCEEEE--------ECCCCCC
Confidence 344444444433 346789997 8888763
No 157
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=22.94 E-value=33 Score=41.53 Aligned_cols=59 Identities=15% Similarity=-0.040 Sum_probs=47.7
Q ss_pred CHHHHHHHhhhcCceeE-eeec-----CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEec
Q 004905 2 DEQMLHNAMILFGEIER-IKSY-----PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFS 60 (724)
Q Consensus 2 dEedLrelFS~FGeI~s-Vkt~-----~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefA 60 (724)
++.++-+.|+.--.|++ |.+. +-++-|||.|...+++..|...-.-.-++.|.|+|.-.
T Consensus 447 ~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 447 PIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred cccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 34566677877777777 6643 45799999999999999999998888889999999654
No 158
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=22.72 E-value=2.3e+02 Score=24.65 Aligned_cols=43 Identities=19% Similarity=0.123 Sum_probs=30.6
Q ss_pred CHHHHHHHhhhc---CceeEeeecCCCCeEEEEeCCHHHHHHHHHHh
Q 004905 2 DEQMLHNAMILF---GEIERIKSYPSRNYSFVEFRSVDEARRAKEGL 45 (724)
Q Consensus 2 dEedLrelFS~F---GeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaL 45 (724)
+.+++...|..| ....+|.-..-- -+=|.|.+.+.|.+|+.+|
T Consensus 17 sT~dI~~y~~~y~~~~~~~~IEWIdDt-ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 17 STDDIKAYFSEYFDEEGPFRIEWIDDT-SCNVVFKDEETAARALVAL 62 (62)
T ss_pred CHHHHHHHHHHhcccCCCceEEEecCC-cEEEEECCHHHHHHHHHcC
Confidence 568899999999 123455522222 3458899999999999876
No 159
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=22.26 E-value=67 Score=32.12 Aligned_cols=64 Identities=11% Similarity=0.316 Sum_probs=41.5
Q ss_pred CCHHHHHHHhhh-cCce---eEeeec--------CCCCeEEEEeCCHHHHHHHHHHhcCCccCCC-----cEEEEeccCC
Q 004905 1 MDEQMLHNAMIL-FGEI---ERIKSY--------PSRNYSFVEFRSVDEARRAKEGLQGRLFNDP-----RITIMFSSSE 63 (724)
Q Consensus 1 VdEedLrelFS~-FGeI---~sVkt~--------~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GR-----rIrVefAk~~ 63 (724)
+||+++++..++ +|+. ..+.-. ..-.-|||.|.+.++...=++.++|..|.+. +-.|+||--.
T Consensus 19 LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg~~~~~~VE~Apyq 98 (176)
T PF03467_consen 19 LTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKGNEYPAVVEFAPYQ 98 (176)
T ss_dssp S-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS-EEEEEEEE-SS-
T ss_pred CCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCCCCcceeEEEcchh
Confidence 478888888887 7776 333310 1124589999999999999999999888554 3557777443
Q ss_pred C
Q 004905 64 L 64 (724)
Q Consensus 64 ~ 64 (724)
+
T Consensus 99 k 99 (176)
T PF03467_consen 99 K 99 (176)
T ss_dssp -
T ss_pred c
Confidence 3
No 160
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=21.95 E-value=8.4e+02 Score=29.19 Aligned_cols=14 Identities=14% Similarity=0.567 Sum_probs=7.5
Q ss_pred CccccccCCccccc
Q 004905 430 EHVLPVDYNRFSHD 443 (724)
Q Consensus 430 ~~~~~~~y~~~lhe 443 (724)
++-++|++-++..|
T Consensus 305 ~q~~~~~~~~~d~e 318 (554)
T KOG0119|consen 305 DQQMPMSSANFDRE 318 (554)
T ss_pred ccccchhhhccCHH
Confidence 44455555555555
No 161
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=21.30 E-value=75 Score=37.37 Aligned_cols=44 Identities=18% Similarity=0.405 Sum_probs=38.6
Q ss_pred CCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEeccCCCCC
Q 004905 23 PSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSSSELAP 66 (724)
Q Consensus 23 ~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVefAk~~~~p 66 (724)
+-..|++++|++.+++.+|+..++|....+..+++.-++.....
T Consensus 61 ~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~~~~ 104 (534)
T KOG2187|consen 61 KMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATEVGS 104 (534)
T ss_pred CCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhccccccc
Confidence 44579999999999999999999999999999999888765443
No 162
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=21.27 E-value=56 Score=39.18 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=46.9
Q ss_pred CHHHHHHHhhhcCceeEeeecCCCCeEEEEeCCHHHHHHHHHHhcCCccCCCcEEEEe
Q 004905 2 DEQMLHNAMILFGEIERIKSYPSRNYSFVEFRSVDEARRAKEGLQGRLFNDPRITIMF 59 (724)
Q Consensus 2 dEedLrelFS~FGeI~sVkt~~SRGFAFVeF~s~EdA~kAIEaLNGk~f~GRrIrVef 59 (724)
..+-++.+...+|.|.+.+..+ |||+.|..++.+.+|+..|+-..++|..+.+.-
T Consensus 53 s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 53 SQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred hHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 3456778888999999888764 999999999999999999999999998876543
Done!