Your job contains 1 sequence.
>004907
MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAEL
QPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGT
VEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRA
QFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRG
MVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAG
EGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPF
EEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAK
LVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMV
LVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQ
AARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ
DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIM
GCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP
PAEE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004907
(724 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2175851 - symbol:HDS "4-hydroxy-3-methylbut-2-... 2849 9.2e-297 1
GENEDB_PFALCIPARUM|PF10_0221 - symbol:PF10_0221 "GcpE pro... 692 1.5e-116 3
UNIPROTKB|Q8IJH7 - symbol:PF10_0221 "GcpE protein" specie... 692 1.5e-116 3
UNIPROTKB|P73672 - symbol:ispG "4-hydroxy-3-methylbut-2-e... 563 1.9e-98 3
UNIPROTKB|Q8DK70 - symbol:ispG "4-hydroxy-3-methylbut-2-e... 539 1.6e-97 3
TIGR_CMR|CHY_1776 - symbol:CHY_1776 "1-hydroxy-2-methyl-2... 367 7.0e-49 2
UNIPROTKB|O33350 - symbol:ispG "4-hydroxy-3-methylbut-2-e... 368 1.0e-47 2
TIGR_CMR|SPO_2594 - symbol:SPO_2594 "1-hydroxy-2-methyl-2... 374 1.5e-47 2
UNIPROTKB|Q81LV7 - symbol:ispG "4-hydroxy-3-methylbut-2-e... 356 6.2e-45 2
TIGR_CMR|BA_4502 - symbol:BA_4502 "gcpE protein" species:... 356 6.2e-45 2
TIGR_CMR|GSU_1459 - symbol:GSU_1459 "1-hydroxy-2-methyl-2... 320 7.2e-43 2
TIGR_CMR|CPS_4252 - symbol:CPS_4252 "1-hydroxy-2-methyl-2... 316 9.2e-39 2
UNIPROTKB|P62620 - symbol:ispG "1-hydroxy-2-methyl-2-(E)-... 315 3.1e-38 2
TIGR_CMR|SO_3312 - symbol:SO_3312 "1-hydroxy-2-methyl-2-(... 305 7.1e-38 2
UNIPROTKB|Q9KTX1 - symbol:ispG "4-hydroxy-3-methylbut-2-e... 309 2.3e-37 2
TIGR_CMR|VC_0759 - symbol:VC_0759 "gcpE protein" species:... 309 2.3e-37 2
TIGR_CMR|CJE_0785 - symbol:CJE_0785 "1-hydroxy-2-methyl-2... 302 6.4e-37 2
TIGR_CMR|DET_0369 - symbol:DET_0369 "1-hydroxy-2-methyl-2... 219 1.4e-33 3
TIGR_CMR|ECH_0559 - symbol:ECH_0559 "4-hydroxy-3-methylbu... 230 2.5e-23 2
TIGR_CMR|NSE_0799 - symbol:NSE_0799 "1-hydroxy-2-methyl-2... 172 5.2e-17 2
TIGR_CMR|APH_0442 - symbol:APH_0442 "4-hydroxy-3-methylbu... 183 6.2e-11 1
>TAIR|locus:2175851 [details] [associations]
symbol:HDS "4-hydroxy-3-methylbut-2-enyl diphosphate
synthase" species:3702 "Arabidopsis thaliana" [GO:0005506 "iron ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008299 "isoprenoid biosynthetic process" evidence=IEA;ISS]
[GO:0016114 "terpenoid biosynthetic process" evidence=IEA]
[GO:0044237 "cellular metabolic process" evidence=IEA] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=IEA;IGI;ISS;IDA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009941
"chloroplast envelope" evidence=IDA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA;TAS] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IDA] [GO:0009617 "response to bacterium" evidence=IMP]
[GO:0009862 "systemic acquired resistance, salicylic acid mediated
signaling pathway" evidence=RCA;IMP] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0000096 "sulfur amino acid metabolic
process" evidence=RCA] [GO:0000165 "MAPK cascade" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0006417
"regulation of translation" evidence=RCA] [GO:0006546 "glycine
catabolic process" evidence=RCA] [GO:0006612 "protein targeting to
membrane" evidence=RCA] [GO:0006636 "unsaturated fatty acid
biosynthetic process" evidence=RCA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0006733 "oxidoreduction coenzyme metabolic process"
evidence=RCA] [GO:0006766 "vitamin metabolic process" evidence=RCA]
[GO:0008652 "cellular amino acid biosynthetic process"
evidence=RCA] [GO:0009072 "aromatic amino acid family metabolic
process" evidence=RCA] [GO:0009106 "lipoate metabolic process"
evidence=RCA] [GO:0009108 "coenzyme biosynthetic process"
evidence=RCA] [GO:0009117 "nucleotide metabolic process"
evidence=RCA] [GO:0009409 "response to cold" evidence=RCA]
[GO:0009416 "response to light stimulus" evidence=RCA] [GO:0009595
"detection of biotic stimulus" evidence=RCA] [GO:0009637 "response
to blue light" evidence=RCA] [GO:0009644 "response to high light
intensity" evidence=RCA] [GO:0009657 "plastid organization"
evidence=RCA] [GO:0009695 "jasmonic acid biosynthetic process"
evidence=RCA] [GO:0009697 "salicylic acid biosynthetic process"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0009814 "defense response, incompatible
interaction" evidence=RCA] [GO:0009867 "jasmonic acid mediated
signaling pathway" evidence=RCA] [GO:0010114 "response to red
light" evidence=RCA] [GO:0010155 "regulation of proton transport"
evidence=RCA] [GO:0010200 "response to chitin" evidence=RCA]
[GO:0010218 "response to far red light" evidence=RCA] [GO:0010304
"PSII associated light-harvesting complex II catabolic process"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0015994
"chlorophyll metabolic process" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0016117
"carotenoid biosynthetic process" evidence=RCA] [GO:0019216
"regulation of lipid metabolic process" evidence=RCA] [GO:0019252
"starch biosynthetic process" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0019748
"secondary metabolic process" evidence=RCA] [GO:0019760
"glucosinolate metabolic process" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0031408
"oxylipin biosynthetic process" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] [GO:0043900 "regulation of
multi-organism process" evidence=RCA] [GO:0044272 "sulfur compound
biosynthetic process" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0050832 "defense response to fungus" evidence=RCA]
InterPro:IPR004588 InterPro:IPR017178 Pfam:PF04551
PIRSF:PIRSF037336 UniPathway:UPA00056 EMBL:CP002688 GO:GO:0009570
GO:GO:0009617 GO:GO:0005506 GO:GO:0009941 GO:GO:0051539
EMBL:AB005246 GO:GO:0016114 GO:GO:0009862 GO:GO:0005351
GO:GO:0009401 GO:GO:0019288 EMBL:AF434673 EMBL:AY081261
EMBL:AY094472 EMBL:BT010473 IPI:IPI00530209 RefSeq:NP_200868.2
RefSeq:NP_851233.1 UniGene:At.21376 UniGene:At.72025
ProteinModelPortal:F4K0E8 PRIDE:F4K0E8 EnsemblPlants:AT5G60600.1
GeneID:836181 KEGG:ath:AT5G60600 TAIR:At5g60600 KO:K03526
OMA:SMRIGTN ProtClustDB:PLN02925 BioCyc:ARA:AT5G60600-MONOMER
BioCyc:MetaCyc:AT5G60600-MONOMER GO:GO:0046429 TIGRFAMs:TIGR00612
Uniprot:F4K0E8
Length = 741
Score = 2849 (1008.0 bits), Expect = 9.2e-297, P = 9.2e-297
Identities = 563/741 (75%), Positives = 625/741 (84%)
Query: 1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSS--SDIA 58
MATG LPA G+K DS +GF KS++ VR+CD R +S RRR +VIRNS+ S +++
Sbjct: 1 MATGVLPAPVSGIKIPDSKVGFGKSMNLVRICDVRSLRSARRRVSVIRNSNQGSDLAELQ 60
Query: 59 ELQPASEGS-PLLVPRQKYCESIHKTVRR-KTRTVMVGN-----VAIGSEHPIRVQTMTT 111
S P + +++ + R V +G+ + + + T T
Sbjct: 61 PASEGSPLLVPRQKYCESLHKTVRRKTRTVMVGNVALGSEHPIRIQTMTTSDTKDITGTV 120
Query: 112 NDTKDVAGTVEEVMRI-------ADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 164
++ +A +++RI ADACFEIK+ LVQ NYNIPLVADIHFAP+VALRVAEC
Sbjct: 121 DEVMRIADKGADIVRITVQGKKEADACFEIKDKLVQLNYNIPLVADIHFAPTVALRVAEC 180
Query: 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG 224
FDKIRVNPGNFADRRAQFE ++YT+DEYQKELQHIE+VF+PLVEKCKKYGRA+RIGTNHG
Sbjct: 181 FDKIRVNPGNFADRRAQFETIDYTEDEYQKELQHIEQVFTPLVEKCKKYGRAMRIGTNHG 240
Query: 225 SLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 284
SLSDRIMSYYGDSPRGMVESAFEFARICRKLD+HNF+FSMKASNPV+MVQAYRLLVAEMY
Sbjct: 241 SLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVIMVQAYRLLVAEMY 300
Query: 285 VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLA 344
VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPE+EIDPCRRLA
Sbjct: 301 VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLA 360
Query: 345 NLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSL 404
NLG +AA+LQQGVAPFEEKHRHYFDFQRR+G LP+QKEGEEVDYR VLHRDGSVLMS+SL
Sbjct: 361 NLGTKAAKLQQGVAPFEEKHRHYFDFQRRTGDLPVQKEGEEVDYRNVLHRDGSVLMSISL 420
Query: 405 DQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVI 464
DQLKAPELLY+SLA KLVVGMPFKDLATVDSILLRELP VDD ARLALKRL+D+SMGVI
Sbjct: 421 DQLKAPELLYRSLATKLVVGMPFKDLATVDSILLRELPPVDDQVARLALKRLIDVSMGVI 480
Query: 465 TPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATM 524
PLSEQLTKPLP+AMVLVNL+ELS GAYKLLPEGTRLVVSLRGDE YEELEILK+IDATM
Sbjct: 481 APLSEQLTKPLPNAMVLVNLKELSGGAYKLLPEGTRLVVSLRGDEPYEELEILKNIDATM 540
Query: 525 ILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNXXXX 584
ILHD+PF EDK+ RV AARRLFE+LSEN++NFPVIHHI FP GIHRD+LVI AGT
Sbjct: 541 ILHDVPFTEDKVSRVHAARRLFEFLSENSVNFPVIHHINFPTGIHRDELVIHAGTYAGGL 600
Query: 585 XXXXXXXXXXXEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAE 644
EAP QDFDFLR+TSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAE
Sbjct: 601 LVDGLGDGVMLEAPDQDFDFLRNTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAE 660
Query: 645 IREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQAT 704
IREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGG+PGKIDLYVGKTVVKRGIAM +AT
Sbjct: 661 IREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGSPGKIDLYVGKTVVKRGIAMTEAT 720
Query: 705 DALIQLIKDHGRWAEPP-AEE 724
DALI LIK+HGRW +PP A+E
Sbjct: 721 DALIGLIKEHGRWVDPPVADE 741
>GENEDB_PFALCIPARUM|PF10_0221 [details] [associations]
symbol:PF10_0221 "GcpE protein" species:5833
"Plasmodium falciparum" [GO:0020011 "apicoplast" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR017178 Pfam:PF04551
PIRSF:PIRSF037336 GO:GO:0005506 GO:GO:0016114 EMBL:AE014185
GO:GO:0020011 KO:K03526 OMA:SMRIGTN GO:GO:0046429
TIGRFAMs:TIGR00612 RefSeq:XP_001347505.1 ProteinModelPortal:Q8IJH7
IntAct:Q8IJH7 MINT:MINT-1651685 EnsemblProtists:PF10_0221:mRNA
GeneID:810378 KEGG:pfa:PF10_0221 EuPathDB:PlasmoDB:PF3D7_1022800
HOGENOM:HOG000261018 ProtClustDB:CLSZ2433456 Uniprot:Q8IJH7
Length = 824
Score = 692 (248.7 bits), Expect = 1.5e-116, Sum P(3) = 1.5e-116
Identities = 149/354 (42%), Positives = 226/354 (63%)
Query: 120 TVEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRR 179
TV+ V A A + IK L+ +N NIPLVADIHF P +AL A+ F+KIRVNPGN+ D R
Sbjct: 171 TVQGVQE-AQASYHIKEKLLSENVNIPLVADIHFNPKIALMAADVFEKIRVNPGNYVDGR 229
Query: 180 AQFEQLEY-TDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP 238
++ Y T +E+ + I+E F PL+EKCK+ RA+RIGTNHGSLS R++SYYGD+P
Sbjct: 230 KKWIDKVYKTKEEFDEGKLFIKEKFVPLIEKCKRLNRAIRIGTNHGSLSSRVLSYYGDTP 289
Query: 239 RGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE 298
GMVESAFEF+ +C + +F+N +FSMKASN VM+Q+YRLLV++ Y +P+HLGVTE
Sbjct: 290 LGMVESAFEFSDLCIENNFYNLVFSMKASNAYVMIQSYRLLVSKQYERNMMFPIHLGVTE 349
Query: 299 AGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLA-NLGMRAAELQQGV 357
AG G++GR+KS +GIG+LL DG+GDTIR+SLTE P +E+ PC++L NL R +
Sbjct: 350 AGFGDNGRIKSYLGIGSLLYDGIGDTIRISLTEDPWEELTPCKKLVENLKKRIFYNENFK 409
Query: 358 APFEEKH-----RHYFDFQRRSGQLP-IQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPE 411
E K+ ++ +F+ I+K E + VLH + ++ V++ +L+
Sbjct: 410 EDNELKNNEMDTKNLLNFEENYRNFNNIKKRNVEKN-NNVLHEECTIGNVVTIKELEDSL 468
Query: 412 LLYKSLAAKLVV-GMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVI 464
++K L ++ G K T D +++ + ++ + + + +L+ + + ++
Sbjct: 469 QIFKDLNLEVDSNGNLKKGAKTTDMVIINDFHNITNLGKK-TVDKLMQVGINIV 521
Score = 369 (135.0 bits), Expect = 1.5e-116, Sum P(3) = 1.5e-116
Identities = 68/112 (60%), Positives = 86/112 (76%)
Query: 609 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG 668
+ N+LQ R+R KT+Y++CPSCGRTLF++QE + +I + T HL GV IA+MGCIVNG G
Sbjct: 713 TLNILQDTRIRLFKTDYIACPSCGRTLFNIQETTKKIMKLTGHLKGVKIAVMGCIVNGIG 772
Query: 669 EMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 720
EMADA FGYVG AP KIDLY GK +V+R I E+A D LI+LIK H +W +P
Sbjct: 773 EMADAHFGYVGSAPKKIDLYYGKELVERNIPEEEACDKLIELIKKHNKWKDP 824
Score = 122 (48.0 bits), Expect = 1.5e-116, Sum P(3) = 1.5e-116
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 44 FTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHP 103
++++ NSS + E ++ +KYCE K R TR V++GNV IG +
Sbjct: 77 YSLLNEEGNSSKKEYKNLKDEEKYNIIQNIKKYCECTKKYKRLPTREVVIGNVKIGGNNK 136
Query: 104 IRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQ 140
I +QTM + DT++V V ++ + D +I VQ
Sbjct: 137 IAIQTMASCDTRNVEECVYQIRKCKDLGADIVRLTVQ 173
Score = 85 (35.0 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 44/239 (18%), Positives = 108/239 (45%)
Query: 360 FEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAA 419
FEE +R++ + ++R+ ++K VLH + ++ V++ +L+ ++K L
Sbjct: 427 FEENYRNFNNIKKRN----VEKNNN------VLHEECTIGNVVTIKELEDSLQIFKDLNL 476
Query: 420 KLVV-GMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLS----EQLTKP 474
++ G K T D +++ + ++ + + + +L+ + + ++ E + K
Sbjct: 477 EVDSNGNLKKGAKTTDMVIINDFHNITNLGKK-TVDKLMQVGINIVVQYEPHNIEFIEKM 535
Query: 475 LPH-----------AMVLVNLQELSTGAYKLLP----EGTRLVVSLRGDESYEELEILKD 519
P+ + V+++ + + K + +G L+ L G E + ++ +K+
Sbjct: 536 EPNNDNNNNNNNNNILFYVDIKNIMNSSEKNIKLSNSKGYGLI--LNGKEDIQTIKKIKE 593
Query: 520 IDATMILHDLPFNEDKI-GRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGA 577
++ + + D I V RR+ E L N+N P IH++ N + DD+++ +
Sbjct: 594 LNRRPLF--ILLKSDNIYEHVLITRRINELLQSLNINIPYIHYVDI-NSNNYDDILVNS 649
Score = 45 (20.9 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 508 DESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQF 564
+E ++ KD+ A ++ + QA+ + E L N+N P++ I F
Sbjct: 151 EECVYQIRKCKDLGADIVR----LTVQGVQEAQASYHIKEKLLSENVNIPLVADIHF 203
Score = 39 (18.8 bits), Expect = 2.7e-38, Sum P(3) = 2.7e-38
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 303 EDGRMKSAIGIGTLLQDGLGDTIRVSLT 330
+D + S + G+ L D +GD + V++T
Sbjct: 643 DDILVNSTLYAGSCLMDLMGDGLIVNVT 670
Score = 38 (18.4 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 73 RQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACF 132
++K+ I K +R R + +G GS RV + DT G VE +D C
Sbjct: 251 KEKFVPLIEKC-KRLNRAIRIGTNH-GSLSS-RVLSYY-GDTP--LGMVESAFEFSDLCI 304
Query: 133 E 133
E
Sbjct: 305 E 305
>UNIPROTKB|Q8IJH7 [details] [associations]
symbol:PF10_0221 "GcpE protein" species:36329 "Plasmodium
falciparum 3D7" [GO:0003674 "molecular_function" evidence=ND]
[GO:0020011 "apicoplast" evidence=IDA] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR017178 Pfam:PF04551
PIRSF:PIRSF037336 GO:GO:0005506 GO:GO:0016114 EMBL:AE014185
GO:GO:0020011 KO:K03526 OMA:SMRIGTN GO:GO:0046429
TIGRFAMs:TIGR00612 RefSeq:XP_001347505.1 ProteinModelPortal:Q8IJH7
IntAct:Q8IJH7 MINT:MINT-1651685 EnsemblProtists:PF10_0221:mRNA
GeneID:810378 KEGG:pfa:PF10_0221 EuPathDB:PlasmoDB:PF3D7_1022800
HOGENOM:HOG000261018 ProtClustDB:CLSZ2433456 Uniprot:Q8IJH7
Length = 824
Score = 692 (248.7 bits), Expect = 1.5e-116, Sum P(3) = 1.5e-116
Identities = 149/354 (42%), Positives = 226/354 (63%)
Query: 120 TVEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRR 179
TV+ V A A + IK L+ +N NIPLVADIHF P +AL A+ F+KIRVNPGN+ D R
Sbjct: 171 TVQGVQE-AQASYHIKEKLLSENVNIPLVADIHFNPKIALMAADVFEKIRVNPGNYVDGR 229
Query: 180 AQFEQLEY-TDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP 238
++ Y T +E+ + I+E F PL+EKCK+ RA+RIGTNHGSLS R++SYYGD+P
Sbjct: 230 KKWIDKVYKTKEEFDEGKLFIKEKFVPLIEKCKRLNRAIRIGTNHGSLSSRVLSYYGDTP 289
Query: 239 RGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE 298
GMVESAFEF+ +C + +F+N +FSMKASN VM+Q+YRLLV++ Y +P+HLGVTE
Sbjct: 290 LGMVESAFEFSDLCIENNFYNLVFSMKASNAYVMIQSYRLLVSKQYERNMMFPIHLGVTE 349
Query: 299 AGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLA-NLGMRAAELQQGV 357
AG G++GR+KS +GIG+LL DG+GDTIR+SLTE P +E+ PC++L NL R +
Sbjct: 350 AGFGDNGRIKSYLGIGSLLYDGIGDTIRISLTEDPWEELTPCKKLVENLKKRIFYNENFK 409
Query: 358 APFEEKH-----RHYFDFQRRSGQLP-IQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPE 411
E K+ ++ +F+ I+K E + VLH + ++ V++ +L+
Sbjct: 410 EDNELKNNEMDTKNLLNFEENYRNFNNIKKRNVEKN-NNVLHEECTIGNVVTIKELEDSL 468
Query: 412 LLYKSLAAKLVV-GMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVI 464
++K L ++ G K T D +++ + ++ + + + +L+ + + ++
Sbjct: 469 QIFKDLNLEVDSNGNLKKGAKTTDMVIINDFHNITNLGKK-TVDKLMQVGINIV 521
Score = 369 (135.0 bits), Expect = 1.5e-116, Sum P(3) = 1.5e-116
Identities = 68/112 (60%), Positives = 86/112 (76%)
Query: 609 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPG 668
+ N+LQ R+R KT+Y++CPSCGRTLF++QE + +I + T HL GV IA+MGCIVNG G
Sbjct: 713 TLNILQDTRIRLFKTDYIACPSCGRTLFNIQETTKKIMKLTGHLKGVKIAVMGCIVNGIG 772
Query: 669 EMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 720
EMADA FGYVG AP KIDLY GK +V+R I E+A D LI+LIK H +W +P
Sbjct: 773 EMADAHFGYVGSAPKKIDLYYGKELVERNIPEEEACDKLIELIKKHNKWKDP 824
Score = 122 (48.0 bits), Expect = 1.5e-116, Sum P(3) = 1.5e-116
Identities = 30/97 (30%), Positives = 49/97 (50%)
Query: 44 FTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHP 103
++++ NSS + E ++ +KYCE K R TR V++GNV IG +
Sbjct: 77 YSLLNEEGNSSKKEYKNLKDEEKYNIIQNIKKYCECTKKYKRLPTREVVIGNVKIGGNNK 136
Query: 104 IRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQ 140
I +QTM + DT++V V ++ + D +I VQ
Sbjct: 137 IAIQTMASCDTRNVEECVYQIRKCKDLGADIVRLTVQ 173
Score = 85 (35.0 bits), Expect = 4.4e-43, Sum P(3) = 4.4e-43
Identities = 44/239 (18%), Positives = 108/239 (45%)
Query: 360 FEEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAA 419
FEE +R++ + ++R+ ++K VLH + ++ V++ +L+ ++K L
Sbjct: 427 FEENYRNFNNIKKRN----VEKNNN------VLHEECTIGNVVTIKELEDSLQIFKDLNL 476
Query: 420 KLVV-GMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLS----EQLTKP 474
++ G K T D +++ + ++ + + + +L+ + + ++ E + K
Sbjct: 477 EVDSNGNLKKGAKTTDMVIINDFHNITNLGKK-TVDKLMQVGINIVVQYEPHNIEFIEKM 535
Query: 475 LPH-----------AMVLVNLQELSTGAYKLLP----EGTRLVVSLRGDESYEELEILKD 519
P+ + V+++ + + K + +G L+ L G E + ++ +K+
Sbjct: 536 EPNNDNNNNNNNNNILFYVDIKNIMNSSEKNIKLSNSKGYGLI--LNGKEDIQTIKKIKE 593
Query: 520 IDATMILHDLPFNEDKI-GRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGA 577
++ + + D I V RR+ E L N+N P IH++ N + DD+++ +
Sbjct: 594 LNRRPLF--ILLKSDNIYEHVLITRRINELLQSLNINIPYIHYVDI-NSNNYDDILVNS 649
Score = 45 (20.9 bits), Expect = 1.7e-30, Sum P(2) = 1.7e-30
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 508 DESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQF 564
+E ++ KD+ A ++ + QA+ + E L N+N P++ I F
Sbjct: 151 EECVYQIRKCKDLGADIVR----LTVQGVQEAQASYHIKEKLLSENVNIPLVADIHF 203
Score = 39 (18.8 bits), Expect = 2.7e-38, Sum P(3) = 2.7e-38
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 303 EDGRMKSAIGIGTLLQDGLGDTIRVSLT 330
+D + S + G+ L D +GD + V++T
Sbjct: 643 DDILVNSTLYAGSCLMDLMGDGLIVNVT 670
Score = 38 (18.4 bits), Expect = 2.4e-34, Sum P(3) = 2.4e-34
Identities = 18/61 (29%), Positives = 26/61 (42%)
Query: 73 RQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACF 132
++K+ I K +R R + +G GS RV + DT G VE +D C
Sbjct: 251 KEKFVPLIEKC-KRLNRAIRIGTNH-GSLSS-RVLSYY-GDTP--LGMVESAFEFSDLCI 304
Query: 133 E 133
E
Sbjct: 305 E 305
>UNIPROTKB|P73672 [details] [associations]
symbol:ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase" species:1111708 "Synechocystis sp. PCC 6803 substr.
Kazusa" [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR016425
Pfam:PF04551 PIRSF:PIRSF004640 UniPathway:UPA00056 GO:GO:0005506
GO:GO:0051539 GO:GO:0016114 EMBL:BA000022 GenomeReviews:BA000022_GR
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 PIR:S77159 RefSeq:NP_441037.1
RefSeq:YP_005651094.1 ProteinModelPortal:P73672 IntAct:P73672
STRING:P73672 GeneID:12255340 GeneID:954350 KEGG:syn:slr2136
KEGG:syy:SYNGTS_1141 PATRIC:23839364 Uniprot:P73672
Length = 403
Score = 563 (203.2 bits), Expect = 1.9e-98, Sum P(3) = 1.9e-98
Identities = 119/238 (50%), Positives = 154/238 (64%)
Query: 125 MRIADACFEIKNSLVQKNYN-IPLVADIHF-APSVALRVAECFDKIRVNPGNFADRRAQF 182
M A A +IK L Q Y +PLVAD+H +AL VA+ DK+R+NPG + +
Sbjct: 77 MAHAKALADIKQKL-QATYQAVPLVADVHHNGMKIALEVAKHVDKVRINPGLYVFEKPDA 135
Query: 183 EQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMV 242
++ Y+D E+ + + I E PLV + G+++RIG NHGSLS+R++ YGD+P GMV
Sbjct: 136 QREGYSDQEFAEIGEKIRETLEPLVISLRDQGKSMRIGVNHGSLSERMLFTYGDTPEGMV 195
Query: 243 ESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEG 302
+SA EF +IC LDF N + SMKAS VM+ AYRL+V M G DYPLHLGVTEAG+G
Sbjct: 196 QSALEFIKICESLDFRNLVVSMKASRVPVMLAAYRLMVKRMDELGMDYPLHLGVTEAGDG 255
Query: 303 EDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN-LGMRAAELQQGVAP 359
E GR+KS GI TLL DG+GDTIRVSLTE PEKEI C + LG+R ++ P
Sbjct: 256 EYGRIKSTAGIATLLADGIGDTIRVSLTEAPEKEIPVCYSILQALGLRKTMVEYVACP 313
Score = 329 (120.9 bits), Expect = 1.9e-98, Sum P(3) = 1.9e-98
Identities = 61/111 (54%), Positives = 78/111 (70%)
Query: 610 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGE 669
+++LQ +R T EYV+CPSCGRTLF+L+++ E+RE T HL G+ IA+MGCIVNGPGE
Sbjct: 294 YSILQALGLRKTMVEYVACPSCGRTLFNLEDVLHEVREATKHLTGLDIAVMGCIVNGPGE 353
Query: 670 MADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 720
MADAD+GYVG G I LY G+ +KR + LI LIK GRW +P
Sbjct: 354 MADADYGYVGKQAGYIALYRGREEIKR-VPETDGVQELINLIKADGRWVDP 403
Score = 119 (46.9 bits), Expect = 1.9e-98, Sum P(3) = 1.9e-98
Identities = 33/84 (39%), Positives = 45/84 (53%)
Query: 69 LLVPRQ-KYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRI 127
L P Q ++ +IH RRKTR V VG V +G HP+ VQ+M DT DV G+V + R+
Sbjct: 6 LPTPVQPEFDTTIH---RRKTRPVPVGAVTVGGGHPVVVQSMINEDTLDVDGSVAGIRRL 62
Query: 128 ADACFEIKNSLVQKNYNIPLVADI 151
+ EI V + +ADI
Sbjct: 63 HEIGCEIVRVTVPSMAHAKALADI 86
>UNIPROTKB|Q8DK70 [details] [associations]
symbol:ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase" species:197221 "Thermosynechococcus elongatus BP-1"
[GO:0005515 "protein binding" evidence=IPI] [GO:0009055 "electron
carrier activity" evidence=TAS] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IDA] HAMAP:MF_00159 InterPro:IPR004588
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 GO:GO:0005506 GO:GO:0009055 GO:GO:0051539
GO:GO:0016114 GO:GO:0019288 EMBL:BA000039 GenomeReviews:BA000039_GR
KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612 eggNOG:COG0821
HOGENOM:HOG000261019 OMA:PRKLEIV ProtClustDB:PRK00366
RefSeq:NP_681786.1 ProteinModelPortal:Q8DK70 IntAct:Q8DK70
STRING:Q8DK70 GeneID:1011326 KEGG:tel:tlr0996 PATRIC:23927294
Uniprot:Q8DK70
Length = 402
Score = 539 (194.8 bits), Expect = 1.6e-97, Sum P(3) = 1.6e-97
Identities = 113/234 (48%), Positives = 150/234 (64%)
Query: 128 ADACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAECFDKIRVNPGNFADRRAQFEQLE 186
A A EI++ L + +PLVAD+H +AL VA+ D +R+NPG + + + + E
Sbjct: 79 AKAMEEIRDRLYKTYKPVPLVADVHHNGMKIALEVAKYVDNVRINPGLYVFEKPKPNRTE 138
Query: 187 YTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAF 246
YT E+ + I E PLV + G+++RIG NHGSL++R++ YGD+P GMVESA
Sbjct: 139 YTQAEFDEIGAKIRETLEPLVISLRDQGKSMRIGVNHGSLAERMLFTYGDTPEGMVESAL 198
Query: 247 EFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGR 306
EF RIC L+F+N S+KAS VM+ A RL+V M G DYPLHLGVTEAG+GE GR
Sbjct: 199 EFIRICESLNFYNLEISLKASRVPVMIAANRLMVKRMDELGMDYPLHLGVTEAGDGEYGR 258
Query: 307 MKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN-LGMRAAELQQGVAP 359
+KS GI TLL +G+GDTIRVSLTE PEKEI C + LG+R ++ P
Sbjct: 259 IKSTAGIATLLAEGIGDTIRVSLTEAPEKEIPVCYGILQALGLRRTMVEYVACP 312
Score = 342 (125.4 bits), Expect = 1.6e-97, Sum P(3) = 1.6e-97
Identities = 62/111 (55%), Positives = 82/111 (73%)
Query: 610 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGE 669
+ +LQ +R T EYV+CPSCGRTLF+L+E+ ++RE T HL G++IA+MGCIVNGPGE
Sbjct: 293 YGILQALGLRRTMVEYVACPSCGRTLFNLEEVLHKVREATKHLTGLNIAVMGCIVNGPGE 352
Query: 670 MADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 720
MADAD+GYVG PG I LY G+ VK+ + + AL++LIK GRW +P
Sbjct: 353 MADADYGYVGKQPGYISLYRGREEVKK-VPEAEGVAALVELIKADGRWVDP 402
Score = 121 (47.7 bits), Expect = 1.6e-97, Sum P(3) = 1.6e-97
Identities = 24/51 (47%), Positives = 33/51 (64%)
Query: 84 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEI 134
VRRKTR V +G+V IG HP+ VQ+M DT D+ G+V + R+ + EI
Sbjct: 18 VRRKTRPVPIGSVVIGGGHPVAVQSMINEDTLDIEGSVAAIRRLHEIGCEI 68
Score = 37 (18.1 bits), Expect = 1.2e-31, Sum P(2) = 1.2e-31
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 17 DSGLGFAKS-VDFVRVCDFRKF 37
D+ G +S ++F+R+C+ F
Sbjct: 188 DTPEGMVESALEFIRICESLNF 209
>TIGR_CMR|CHY_1776 [details] [associations]
symbol:CHY_1776 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 GO:GO:0005506 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0051539 GO:GO:0016114
SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 OMA:PRKLEIV HOGENOM:HOG000261017
RefSeq:YP_360596.1 ProteinModelPortal:Q3AB88 STRING:Q3AB88
GeneID:3728187 KEGG:chy:CHY_1776 PATRIC:21276663
ProtClustDB:CLSK2772364 BioCyc:CHYD246194:GJCN-1775-MONOMER
Uniprot:Q3AB88
Length = 355
Score = 367 (134.2 bits), Expect = 7.0e-49, Sum P(2) = 7.0e-49
Identities = 101/280 (36%), Positives = 146/280 (52%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKN-------- 136
RRKT+T+ +G V +G + PI VQ+MT DT+D T+ ++ R+ A E+
Sbjct: 5 RRKTKTIFIGTVPVGGDAPITVQSMTNTDTRDWQKTLRQIKRLKKAGCELVRVAVPDQEA 64
Query: 137 ----SLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDE 191
L+ + +P++ADIHF +AL E +R+NPGN
Sbjct: 65 ARALKLIVEKSPLPVIADIHFDYKLALMALEAGVHGLRLNPGNIGSA------------- 111
Query: 192 YQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFAR 250
E+V +V + K +RIG N GSL +++ YG +P MVESA
Sbjct: 112 --------EKV-RIIVREAKNRRVPIRIGVNAGSLEKKLVEKYGGITPEAMVESALHHVG 162
Query: 251 ICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSA 310
I + F S+KAS+ +M+ AYRLL ++ DYP H+GVTEAG G +KSA
Sbjct: 163 ILEDMGFDLIKISLKASDIPLMLAAYRLLAKKV-----DYPFHIGVTEAGPRSTGIIKSA 217
Query: 311 IGIGTLLQDGLGDTIRVSLTEPPEKEID-PCRRLANLGMR 349
+GIG LL +G+GDT+RVSLT P +E+ + L LG+R
Sbjct: 218 VGIGALLAEGIGDTLRVSLTADPVEEVKIGFQILKALGLR 257
Score = 175 (66.7 bits), Expect = 7.0e-49, Sum P(2) = 7.0e-49
Identities = 39/104 (37%), Positives = 58/104 (55%)
Query: 610 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPG 668
F +L+ +R E +SCP+CGRT D+ +I+ E+ + ++ + IA+MGC+VNGPG
Sbjct: 248 FQILKALGLREYGAEVISCPTCGRTQVDIIKIAREVEKFAQNVKKPLKIAVMGCVVNGPG 307
Query: 669 EMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIK 712
E +AD G GG + GK V R I E+ L + IK
Sbjct: 308 EAREADIGIAGGRGEALLFKKGKVV--RKIGEEEILKVLKEEIK 349
>UNIPROTKB|O33350 [details] [associations]
symbol:ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase" species:1773 "Mycobacterium tuberculosis" [GO:0005618
"cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 GO:GO:0005886 GO:GO:0005618
Gene3D:3.20.20.70 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0005506 GO:GO:0051539 EMBL:BX842581
GO:GO:0016114 SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 PIR:F70886 RefSeq:NP_217384.1
RefSeq:NP_337447.1 RefSeq:YP_006516321.1 ProteinModelPortal:O33350
SMR:O33350 PRIDE:O33350 EnsemblBacteria:EBMYCT00000003421
EnsemblBacteria:EBMYCT00000069095 GeneID:13317660 GeneID:887463
GeneID:925341 KEGG:mtc:MT2936 KEGG:mtu:Rv2868c KEGG:mtv:RVBD_2868c
PATRIC:18128228 TubercuList:Rv2868c Uniprot:O33350
Length = 387
Score = 368 (134.6 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
Identities = 102/275 (37%), Positives = 145/275 (52%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYN 144
RR TR +MVGNV +GS+HP+ VQ+M T T DV T++++ + A +I + +
Sbjct: 18 RRATRQLMVGNVGVGSDHPVSVQSMCTTKTHDVNSTLQQIAELTAAGCDIVRVACPRQED 77
Query: 145 IPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 204
+A+I + + VA+ I P R F ++ + +I+E
Sbjct: 78 ADALAEIARHSQIPV-VAD----IHFQP------RYIFAAIDAGCAAVRVNPGNIKEFDG 126
Query: 205 PLVEKCKKYGRA---VRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFARICRKLDFHNF 260
+ E K G A +RIG N GSL R M YG + P +VESA A + + F +
Sbjct: 127 RVGEVAKAAGAAGIPIRIGVNAGSLDKRFMEKYGKATPEALVESALWEASLFEEHGFGDI 186
Query: 261 LFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDG 320
S+K ++PVVMV AY LL A DYPLHLGVTEAG G +KSA+ G LL G
Sbjct: 187 KISVKHNDPVVMVAAYELLAARC-----DYPLHLGVTEAGPAFQGTIKSAVAFGALLSRG 241
Query: 321 LGDTIRVSLTEPPEKEIDPCRR-LANLGMRAAELQ 354
+GDTIRVSL+ PP +E+ + L +L +R L+
Sbjct: 242 IGDTIRVSLSAPPVEEVKVGNQVLESLNLRPRSLE 276
Score = 163 (62.4 bits), Expect = 1.0e-47, Sum P(2) = 1.0e-47
Identities = 38/102 (37%), Positives = 57/102 (55%)
Query: 612 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSI----AIMGCIVNGP 667
+L+ +R E VSCPSCGR D+ ++ E+ T+ L G+ + A+MGC+VNGP
Sbjct: 264 VLESLNLRPRSLEIVSCPSCGRAQVDVYTLANEV---TAGLDGLDVPLRVAVMGCVVNGP 320
Query: 668 GEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 709
GE +AD G G GK ++V V+K + Q + LI+
Sbjct: 321 GEAREADLGVASGN-GKGQIFVRGEVIKT-VPEAQIVETLIE 360
>TIGR_CMR|SPO_2594 [details] [associations]
symbol:SPO_2594 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=ISS] [GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl
diphosphate synthase activity" evidence=ISS] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR011005 InterPro:IPR013785
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 Gene3D:3.20.20.70 GO:GO:0005506 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0051539 GO:GO:0016114
SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 RefSeq:YP_167807.1 ProteinModelPortal:Q5LQ99
GeneID:3194269 KEGG:sil:SPO2594 PATRIC:23378591 Uniprot:Q5LQ99
Length = 375
Score = 374 (136.7 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 107/280 (38%), Positives = 150/280 (53%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEI-KNSL----- 138
RRK+R +MVGNV +G + PI VQTMT T DVA TV +V A+A +I + S+
Sbjct: 14 RRKSRQIMVGNVPVGGDAPISVQTMTNTLTTDVAATVAQVQAAAEAGADIVRVSVPDEAS 73
Query: 139 ------VQKNYNIPLVADIHFAPSVALRVAECFDK-IRVNPGNFADRRAQFEQLEYTDDE 191
+ + +P+VADIHF + AE +R+NPGN + D
Sbjct: 74 ARALREIVRESPVPIVADIHFHYRRGIEAAEAGAACLRINPGNIG-----------SPDR 122
Query: 192 YQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS-PRGMVESAFEFAR 250
+ EV + + +G ++RIG N GSL ++ YG+ P MVES E R
Sbjct: 123 -------VREV----IRAARDHGCSIRIGVNAGSLEKHLLEKYGEPCPEAMVESGLEHIR 171
Query: 251 ICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSA 310
I + DFH + S+KAS+ + AY+ +AE D P+HLG+TEAG G +KSA
Sbjct: 172 ILQDNDFHEYKISVKASDVFLSAAAYQG-IAE----ATDAPIHLGITEAGGLVSGTIKSA 226
Query: 311 IGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRR-LANLGMR 349
IG+G LL G+GDTIRVSL+ P +E+ L +LG+R
Sbjct: 227 IGLGNLLWMGIGDTIRVSLSADPVEEVKVGYEILKSLGLR 266
Score = 155 (59.6 bits), Expect = 1.5e-47, Sum P(2) = 1.5e-47
Identities = 32/105 (30%), Positives = 60/105 (57%)
Query: 610 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPG 668
+ +L+ +R+ +SCPSC R FD+ + + ++ H+ +S++I+GC+VNGPG
Sbjct: 257 YEILKSLGLRHRGVNIISCPSCARQGFDVIKTVEALEKRLEHIKTPMSLSIIGCVVNGPG 316
Query: 669 EMADADFGYVGGAPGKIDLYV-GKTVVKRGIAMEQATDALIQLIK 712
E D G+ GG G +Y+ GK K ++ E+ D +++ ++
Sbjct: 317 EALMTDVGFTGGGAGSGMVYLAGKASHK--MSNERMIDHIVEEVE 359
>UNIPROTKB|Q81LV7 [details] [associations]
symbol:ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 Gene3D:3.20.20.70
GO:GO:0005506 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0051539 GO:GO:0016114
SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 RefSeq:NP_846727.1 RefSeq:YP_021146.1
RefSeq:YP_030429.1 ProteinModelPortal:Q81LV7 DNASU:1088122
EnsemblBacteria:EBBACT00000010534 EnsemblBacteria:EBBACT00000014453
EnsemblBacteria:EBBACT00000022514 GeneID:1088122 GeneID:2818786
GeneID:2851988 KEGG:ban:BA_4502 KEGG:bar:GBAA_4502 KEGG:bat:BAS4180
eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 BioCyc:BANT260799:GJAJ-4237-MONOMER
BioCyc:BANT261594:GJ7F-4379-MONOMER Uniprot:Q81LV7
Length = 367
Score = 356 (130.4 bits), Expect = 6.2e-45, Sum P(2) = 6.2e-45
Identities = 95/264 (35%), Positives = 140/264 (53%)
Query: 83 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKN 142
T R KTR V VGN+ IG + + +Q+MTT T DV TV E+ R+ +A ++ V
Sbjct: 2 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDE 61
Query: 143 YNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI--E 200
+ADI ++ L VA+ +F D R + +E D+ + +I
Sbjct: 62 RAANAIADIKKQINIPL-VADI---------HF-DYRLALKAIEGGIDKVRINPGNIGRR 110
Query: 201 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHN 259
+V K+ G +RIG N GSL I+ YG + GMVESA +I LDFH+
Sbjct: 111 HKVEAVVNAAKERGIPIRIGVNAGSLERHILEKYGYPTADGMVESALHHIKILEDLDFHD 170
Query: 260 FLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQD 319
+ SMKAS+ + ++AY E +DYPLHLG+TE+G G +KSA G+G +L
Sbjct: 171 IIVSMKASDVNLAIEAY-----EKAARAFDYPLHLGITESGTLFAGTVKSAAGLGAILNK 225
Query: 320 GLGDTIRVSLTEPPEKEIDPCRRL 343
G+G+T+R+SL+ P +E+ R L
Sbjct: 226 GIGNTLRISLSADPVEEVKVAREL 249
Score = 149 (57.5 bits), Expect = 6.2e-45, Sum P(2) = 6.2e-45
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 612 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEM 670
LL+ + + +SCP+CGR DL I+ E+ E S L + +A++GC VNGPGE
Sbjct: 249 LLKSFGLASNAATLISCPTCGRIEIDLISIANEVEEYISTLQVPIKVAVLGCAVNGPGEA 308
Query: 671 ADADFGYVGGAPGKIDLYVGKTVVKR 696
+AD G + GA G+ L+ VV++
Sbjct: 309 READIG-IAGARGEGLLFRKGQVVRK 333
>TIGR_CMR|BA_4502 [details] [associations]
symbol:BA_4502 "gcpE protein" species:198094 "Bacillus
anthracis str. Ames" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR011005 InterPro:IPR013785
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 Gene3D:3.20.20.70 GO:GO:0005506 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0051539
GO:GO:0016114 SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 RefSeq:NP_846727.1 RefSeq:YP_021146.1
RefSeq:YP_030429.1 ProteinModelPortal:Q81LV7 DNASU:1088122
EnsemblBacteria:EBBACT00000010534 EnsemblBacteria:EBBACT00000014453
EnsemblBacteria:EBBACT00000022514 GeneID:1088122 GeneID:2818786
GeneID:2851988 KEGG:ban:BA_4502 KEGG:bar:GBAA_4502 KEGG:bat:BAS4180
eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 BioCyc:BANT260799:GJAJ-4237-MONOMER
BioCyc:BANT261594:GJ7F-4379-MONOMER Uniprot:Q81LV7
Length = 367
Score = 356 (130.4 bits), Expect = 6.2e-45, Sum P(2) = 6.2e-45
Identities = 95/264 (35%), Positives = 140/264 (53%)
Query: 83 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKN 142
T R KTR V VGN+ IG + + +Q+MTT T DV TV E+ R+ +A ++ V
Sbjct: 2 THRTKTRPVKVGNLTIGGNNELIIQSMTTTKTHDVEATVAEIKRLEEAGCQVVRVAVPDE 61
Query: 143 YNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI--E 200
+ADI ++ L VA+ +F D R + +E D+ + +I
Sbjct: 62 RAANAIADIKKQINIPL-VADI---------HF-DYRLALKAIEGGIDKVRINPGNIGRR 110
Query: 201 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHN 259
+V K+ G +RIG N GSL I+ YG + GMVESA +I LDFH+
Sbjct: 111 HKVEAVVNAAKERGIPIRIGVNAGSLERHILEKYGYPTADGMVESALHHIKILEDLDFHD 170
Query: 260 FLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQD 319
+ SMKAS+ + ++AY E +DYPLHLG+TE+G G +KSA G+G +L
Sbjct: 171 IIVSMKASDVNLAIEAY-----EKAARAFDYPLHLGITESGTLFAGTVKSAAGLGAILNK 225
Query: 320 GLGDTIRVSLTEPPEKEIDPCRRL 343
G+G+T+R+SL+ P +E+ R L
Sbjct: 226 GIGNTLRISLSADPVEEVKVAREL 249
Score = 149 (57.5 bits), Expect = 6.2e-45, Sum P(2) = 6.2e-45
Identities = 33/86 (38%), Positives = 50/86 (58%)
Query: 612 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEM 670
LL+ + + +SCP+CGR DL I+ E+ E S L + +A++GC VNGPGE
Sbjct: 249 LLKSFGLASNAATLISCPTCGRIEIDLISIANEVEEYISTLQVPIKVAVLGCAVNGPGEA 308
Query: 671 ADADFGYVGGAPGKIDLYVGKTVVKR 696
+AD G + GA G+ L+ VV++
Sbjct: 309 READIG-IAGARGEGLLFRKGQVVRK 333
>TIGR_CMR|GSU_1459 [details] [associations]
symbol:GSU_1459 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate" species:243231 "Geobacter sulfurreducens PCA"
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 GO:GO:0005506 GO:GO:0051539 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016114 SUPFAM:SSF51717
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 OMA:PRKLEIV ProtClustDB:PRK00366 RefSeq:NP_952510.1
ProteinModelPortal:Q74D60 GeneID:2686219 KEGG:gsu:GSU1459
PATRIC:22025761 HOGENOM:HOG000261017
BioCyc:GSUL243231:GH27-1438-MONOMER Uniprot:Q74D60
Length = 353
Score = 320 (117.7 bits), Expect = 7.2e-43, Sum P(2) = 7.2e-43
Identities = 92/257 (35%), Positives = 132/257 (51%)
Query: 84 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNY 143
++ KTR + VGNV +G + P VQ+M DT+D T++++ +A A EI V
Sbjct: 1 MKAKTRQIRVGNVPVGGDAPCSVQSMCNTDTRDAGATLDQINALAAAGCEIVRCAV---- 56
Query: 144 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 203
P D+ A + AL + I V D + + LE D + +I E +
Sbjct: 57 --P---DM--AAAEALGAIKRQSPIPVIADIHFDYKLALKVLEGGIDGLRLNPGNIGERW 109
Query: 204 S--PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNF 260
+V ++ +RIG N GSL ++ YG + MVESA RI +L +
Sbjct: 110 KVEEVVAAARERLVPIRIGVNAGSLEKELLQKYGHPTAEAMVESALGHVRILEELGYDQI 169
Query: 261 LFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDG 320
S+KAS+ V AYRLL + DYPLH+G+TEAG G +KSA+G+G LL DG
Sbjct: 170 KISLKASDVPKTVAAYRLLAQRI-----DYPLHIGITEAGTMFSGTIKSAVGLGILLADG 224
Query: 321 LGDTIRVSLTEPPEKEI 337
+GDT+RVSLT P E+
Sbjct: 225 IGDTLRVSLTGDPVDEV 241
Score = 167 (63.8 bits), Expect = 7.2e-43, Sum P(2) = 7.2e-43
Identities = 38/111 (34%), Positives = 63/111 (56%)
Query: 599 GQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSI 657
G D +R F +L+ +R VSCP+CGR +L ++ E+ ++ + + +++
Sbjct: 235 GDPVDEVR-VGFEILKALNLRQKGINLVSCPTCGRCQINLIGVAEEVEKRLAGIDAHLTV 293
Query: 658 AIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALI 708
A+MGC+VNGPGE +AD G GG G+ L+ +V++ + A DALI
Sbjct: 294 AVMGCVVNGPGEAREADVGIAGGR-GEGLLFRNGEIVRKVPEADMA-DALI 342
>TIGR_CMR|CPS_4252 [details] [associations]
symbol:CPS_4252 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:167879 "Colwellia psychrerythraea
34H" [GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 Gene3D:3.20.20.70
GO:GO:0005506 GO:GO:0051539 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0016114 SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 RefSeq:YP_270902.1 ProteinModelPortal:Q47WC0
STRING:Q47WC0 DNASU:3518903 GeneID:3518903 KEGG:cps:CPS_4252
PATRIC:21471369 BioCyc:CPSY167879:GI48-4262-MONOMER Uniprot:Q47WC0
Length = 376
Score = 316 (116.3 bits), Expect = 9.2e-39, Sum P(2) = 9.2e-39
Identities = 91/257 (35%), Positives = 134/257 (52%)
Query: 84 VRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNY 143
+RR +R +MVGNV +G + PI VQ+MT T DVA TV ++ + +I V
Sbjct: 8 IRRVSRQIMVGNVPVGGDAPITVQSMTNTLTTDVAATVAQIKALEAVGADIVRVSVPTMD 67
Query: 144 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI--EE 201
+I +V L VA+ +F D R + EY D + +I E
Sbjct: 68 AAEAFREIKKQVNVPL-VADI---------HF-DYRIALKVAEYGVDCLRINPGNIGNEN 116
Query: 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNF 260
+VE + +RIG N GSL I Y + +P ++ESA I +L+F+ F
Sbjct: 117 RIRSVVECARDNNIPIRIGVNGGSLEKDIQEKYTEPTPEALLESAMRHVDILDRLNFNEF 176
Query: 261 LFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDG 320
S+KAS+ + V++Y+LL ++ D PLHLG+TEAG G +KS++G+G LL G
Sbjct: 177 KVSVKASDVFLAVESYKLLAKQI-----DNPLHLGITEAGGLRSGSVKSSVGLGLLLAQG 231
Query: 321 LGDTIRVSLTEPPEKEI 337
+GDTIR+SL P +EI
Sbjct: 232 IGDTIRISLAADPIEEI 248
Score = 132 (51.5 bits), Expect = 9.2e-39, Sum P(2) = 9.2e-39
Identities = 31/108 (28%), Positives = 52/108 (48%)
Query: 610 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHL-PGVSIAIMGCIVNGPG 668
F++L+ ++R+ ++CPSC R FD+ + ++ + + ++I+GCIVNGPG
Sbjct: 252 FDILKSLKLRSRGINLIACPSCSRQEFDVVSTVNALEQRIEDIMTPMDVSIIGCIVNGPG 311
Query: 669 EMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGR 716
E +D G G + K Y+ K D L Q I+ R
Sbjct: 312 EAMVSDLGLTGSSK-KSGYYLDGIRQKERFDNTDLVDQLEQRIRAKAR 358
>UNIPROTKB|P62620 [details] [associations]
symbol:ispG "1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
synthase" species:83333 "Escherichia coli K-12" [GO:0016114
"terpenoid biosynthetic process" evidence=IEA] [GO:0005506 "iron
ion binding" evidence=IEA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0008299 "isoprenoid biosynthetic
process" evidence=IEA] [GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl
diphosphate synthase activity" evidence=IEA;IDA] [GO:0006744
"ubiquinone biosynthetic process" evidence=IDA] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR011005 InterPro:IPR013785
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 Gene3D:3.20.20.70 GO:GO:0005506 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0051539 GO:GO:0006744 GO:GO:0016114 SUPFAM:SSF51717
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 EMBL:X64451 EMBL:AY033515 EMBL:M11843
PIR:S23058 RefSeq:NP_417010.1 RefSeq:YP_490743.1
ProteinModelPortal:P62620 SMR:P62620 DIP:DIP-35832N IntAct:P62620
PaxDb:P62620 PRIDE:P62620 EnsemblBacteria:EBESCT00000000373
EnsemblBacteria:EBESCT00000018344 GeneID:12931596 GeneID:946991
KEGG:ecj:Y75_p2468 KEGG:eco:b2515 PATRIC:32120423 EchoBASE:EB0365
EcoGene:EG10370 BioCyc:EcoCyc:EG10370-MONOMER
BioCyc:ECOL316407:JW2499-MONOMER BioCyc:MetaCyc:EG10370-MONOMER
Genevestigator:P62620 Uniprot:P62620
Length = 372
Score = 315 (115.9 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 91/256 (35%), Positives = 137/256 (53%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYN 144
RRK+ + VGNV IG PI VQ+MT T DV TV ++ + + +V+ +
Sbjct: 9 RRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEATVNQIKALE----RVGADIVR--VS 62
Query: 145 IPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI--EEV 202
+P + D A + L + + + V +F D R + EY D + +I EE
Sbjct: 63 VPTM-DA--AEAFKL-IKQQVNVPLVADIHF-DYRIALKVAEYGVDCLRINPGNIGNEER 117
Query: 203 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFL 261
+V+ + +RIG N GSL + YG+ +P+ ++ESA +L+F F
Sbjct: 118 IRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLESAMRHVDHLDRLNFDQFK 177
Query: 262 FSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGL 321
S+KAS+ + V++YRLL ++ D PLHLG+TEAG G +KSAIG+G LL +G+
Sbjct: 178 VSVKASDVFLAVESYRLLAKQI-----DQPLHLGITEAGGARSGAVKSAIGLGLLLSEGI 232
Query: 322 GDTIRVSLTEPPEKEI 337
GDT+RVSL P +EI
Sbjct: 233 GDTLRVSLAADPVEEI 248
Score = 128 (50.1 bits), Expect = 3.1e-38, Sum P(2) = 3.1e-38
Identities = 26/80 (32%), Positives = 46/80 (57%)
Query: 610 FNLLQGCRMRNTKTEYVSCPSCGRTLFD-LQEISAEIREKTSHLPGVSIAIMGCIVNGPG 668
F++L+ R+R+ +++CP+C R FD + ++A + + + ++I+GC+VNGPG
Sbjct: 252 FDILKSLRIRSRGINFIACPTCSRQEFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPG 311
Query: 669 EMADADFGYVGGAPGKIDLY 688
E + G GG K LY
Sbjct: 312 EALVSTLGVTGGNK-KSGLY 330
>TIGR_CMR|SO_3312 [details] [associations]
symbol:SO_3312 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:211586 "Shewanella oneidensis MR-1"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008299
"isoprenoid biosynthetic process" evidence=ISS] HAMAP:MF_00159
InterPro:IPR004588 InterPro:IPR011005 InterPro:IPR013785
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 Gene3D:3.20.20.70 GO:GO:0005506 GO:GO:0051539
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0016114
SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 RefSeq:NP_718866.1 ProteinModelPortal:Q8EC32
GeneID:1170997 KEGG:son:SO_3312 PATRIC:23526300 Uniprot:Q8EC32
Length = 371
Score = 305 (112.4 bits), Expect = 7.1e-38, Sum P(2) = 7.1e-38
Identities = 91/256 (35%), Positives = 130/256 (50%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYN 144
RR + + VGNV IG PI VQ+MT T DV TV ++ + +I V
Sbjct: 9 RRPSTRIYVGNVPIGDGAPIAVQSMTNTKTTDVEATVAQIRALEKVGADIVRVSVPTMDA 68
Query: 145 IPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI--EEV 202
I + SV L VA+ +F D R + EY D + +I EE
Sbjct: 69 AEAFKLIKQSVSVPL-VADI---------HF-DYRIALKVAEYGVDCLRINPGNIGNEER 117
Query: 203 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFL 261
+VE + +RIG N GSL +M Y + +P ++ESA I +L+F F
Sbjct: 118 IRSVVECARDKNIPIRIGVNGGSLEKDLMDKYKEPTPEALLESAMRHVDILDRLNFDQFK 177
Query: 262 FSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGL 321
S+KAS+ + V++YRLL ++ PLHLG+TEAG G +KSA+G+G LL +G+
Sbjct: 178 VSVKASDVFLAVESYRLLAKQIR-----QPLHLGITEAGGARAGAVKSAVGLGMLLAEGI 232
Query: 322 GDTIRVSLTEPPEKEI 337
GDT+R+SL P +EI
Sbjct: 233 GDTLRISLAADPVEEI 248
Score = 135 (52.6 bits), Expect = 7.1e-38, Sum P(2) = 7.1e-38
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 610 FNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPG 668
F++L+ R+R+ +++CPSC R FD+ E+ + + + ++I+GC+VNGPG
Sbjct: 252 FDILKSLRIRSRGINFIACPSCSRQEFDVISTVNELERRLEDVTTAMDVSIIGCVVNGPG 311
Query: 669 EMADADFGYVGG 680
E + G GG
Sbjct: 312 EALVSHIGLTGG 323
>UNIPROTKB|Q9KTX1 [details] [associations]
symbol:ispG "4-hydroxy-3-methylbut-2-en-1-yl diphosphate
synthase" species:243277 "Vibrio cholerae O1 biovar El Tor str.
N16961" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 Gene3D:3.20.20.70
GO:GO:0005506 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
GO:GO:0016114 SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 OMA:PRKLEIV ProtClustDB:PRK00366
PIR:F82283 RefSeq:NP_230408.1 ProteinModelPortal:Q9KTX1
DNASU:2615302 GeneID:2615302 KEGG:vch:VC0759 PATRIC:20080629
Uniprot:Q9KTX1
Length = 374
Score = 309 (113.8 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 92/256 (35%), Positives = 130/256 (50%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYN 144
RR + + VG+V IG PI VQ+MT T DVA TV ++ + +I V
Sbjct: 9 RRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVRVSVPTMEA 68
Query: 145 IPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI--EEV 202
I SV L VA+ +F D R + EY D + +I E
Sbjct: 69 AEAFKLIKQQVSVPL-VADI---------HF-DYRIALKVAEYGVDCLRINPGNIGNEAR 117
Query: 203 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFL 261
+V+ + G +RIG N GSL + YG+ +P +VESA I +L+F F
Sbjct: 118 IRSVVDCARDKGIPIRIGVNGGSLEKDLQLKYGEPTPEALVESAMRHVDILDRLNFDQFK 177
Query: 262 FSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGL 321
S+KAS+ + V +YRLL ++ D PLHLG+TEAG G +KSA+G+G LL +G+
Sbjct: 178 VSVKASDVFLAVDSYRLLAKKI-----DQPLHLGITEAGGARAGSVKSAVGLGMLLAEGI 232
Query: 322 GDTIRVSLTEPPEKEI 337
GDT+R+SL P +EI
Sbjct: 233 GDTLRISLAADPVEEI 248
Score = 126 (49.4 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 610 FNLLQGCRMRNTKTEYVSCPSCGRTLFD-LQEISAEIREKTSHLPGVSIAIMGCIVNGPG 668
F++L+ R+R+ +++CPSC R FD + ++A + L + ++I+GC+VNGPG
Sbjct: 252 FDILKSLRIRSRGINFIACPSCSRQEFDVIGTVNALEQRLEDVLTPMDVSIIGCVVNGPG 311
Query: 669 EMADADFGYVG 679
E + G G
Sbjct: 312 EAEVSHLGLAG 322
>TIGR_CMR|VC_0759 [details] [associations]
symbol:VC_0759 "gcpE protein" species:686 "Vibrio cholerae
O1 biovar El Tor" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 Gene3D:3.20.20.70
GO:GO:0005506 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0051539
GO:GO:0016114 SUPFAM:SSF51717 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 OMA:PRKLEIV ProtClustDB:PRK00366
PIR:F82283 RefSeq:NP_230408.1 ProteinModelPortal:Q9KTX1
DNASU:2615302 GeneID:2615302 KEGG:vch:VC0759 PATRIC:20080629
Uniprot:Q9KTX1
Length = 374
Score = 309 (113.8 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 92/256 (35%), Positives = 130/256 (50%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYN 144
RR + + VG+V IG PI VQ+MT T DVA TV ++ + +I V
Sbjct: 9 RRPSTRIYVGDVPIGDGAPIAVQSMTNTRTTDVAATVAQIKSLEKVGADIVRVSVPTMEA 68
Query: 145 IPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI--EEV 202
I SV L VA+ +F D R + EY D + +I E
Sbjct: 69 AEAFKLIKQQVSVPL-VADI---------HF-DYRIALKVAEYGVDCLRINPGNIGNEAR 117
Query: 203 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFL 261
+V+ + G +RIG N GSL + YG+ +P +VESA I +L+F F
Sbjct: 118 IRSVVDCARDKGIPIRIGVNGGSLEKDLQLKYGEPTPEALVESAMRHVDILDRLNFDQFK 177
Query: 262 FSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGL 321
S+KAS+ + V +YRLL ++ D PLHLG+TEAG G +KSA+G+G LL +G+
Sbjct: 178 VSVKASDVFLAVDSYRLLAKKI-----DQPLHLGITEAGGARAGSVKSAVGLGMLLAEGI 232
Query: 322 GDTIRVSLTEPPEKEI 337
GDT+R+SL P +EI
Sbjct: 233 GDTLRISLAADPVEEI 248
Score = 126 (49.4 bits), Expect = 2.3e-37, Sum P(2) = 2.3e-37
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 610 FNLLQGCRMRNTKTEYVSCPSCGRTLFD-LQEISAEIREKTSHLPGVSIAIMGCIVNGPG 668
F++L+ R+R+ +++CPSC R FD + ++A + L + ++I+GC+VNGPG
Sbjct: 252 FDILKSLRIRSRGINFIACPSCSRQEFDVIGTVNALEQRLEDVLTPMDVSIIGCVVNGPG 311
Query: 669 EMADADFGYVG 679
E + G G
Sbjct: 312 EAEVSHLGLAG 322
>TIGR_CMR|CJE_0785 [details] [associations]
symbol:CJE_0785 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:195099 "Campylobacter jejuni
RM1221" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011005
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 GO:GO:0005506 GO:GO:0051539 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016114 SUPFAM:SSF51717
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 HOGENOM:HOG000261019 ProtClustDB:PRK00366
RefSeq:YP_178790.1 ProteinModelPortal:Q5HV95 STRING:Q5HV95
GeneID:3230736 KEGG:cjr:CJE0785 PATRIC:20043317 OMA:MTESAME
BioCyc:CJEJ195099:GJC0-800-MONOMER Uniprot:Q5HV95
Length = 357
Score = 302 (111.4 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 90/260 (34%), Positives = 132/260 (50%)
Query: 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYN 144
R KTR + VGNV IG + PI VQ+M T+D+ G++E++ R+ A I +
Sbjct: 5 RFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQINRLYFAGANIVRLACLDMAD 64
Query: 145 IPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQF-EQLEYTDDEYQKELQHIEEVF 203
+ +I + L V D I N N A A+F + + + ++I+EV
Sbjct: 65 ARALKEIKAKSPLPLIV----D-IHFNH-NLAVYCAEFIDGVRINPGNIGSK-ENIKEV- 116
Query: 204 SPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 263
V+ CK+ G +RIG NHGS+ + +G M+ESA ++ LDF + S
Sbjct: 117 ---VKACKERGIPIRIGINHGSIEKQFSDKFGYGVDAMLESAMYNIKLLEDLDFFDIKIS 173
Query: 264 MKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGD 323
MK S+ ++AY L DYP HLGVTEAG +KS+I +G LL G+GD
Sbjct: 174 MKTSDAQKTIEAYERLRPLC-----DYPFHLGVTEAGTKFHSTVKSSIALGNLLLKGIGD 228
Query: 324 TIRVSLTEPPEKEIDPCRRL 343
T+RVS+T E+EI R +
Sbjct: 229 TMRVSMTGELEEEIRVARAI 248
Score = 129 (50.5 bits), Expect = 6.4e-37, Sum P(2) = 6.4e-37
Identities = 30/103 (29%), Positives = 51/103 (49%)
Query: 612 LLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGPGEM 670
+LQ ++ + +SCP+CGR DL + EKT H+ ++I++MGC+VN GE
Sbjct: 248 ILQDSGVQKSGVNIISCPTCGRIQSDLLSAIKIVEEKTKHIKEPLNISVMGCVVNALGEA 307
Query: 671 ADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKD 713
AD G + + G+ V K + + D + ++D
Sbjct: 308 KGADVAIAFGKNQGLVIRHGEVVAK--LKESELVDRFLAEVED 348
>TIGR_CMR|DET_0369 [details] [associations]
symbol:DET_0369 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:243164 "Dehalococcoides ethenogenes
195" [GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR011060
InterPro:IPR013785 InterPro:IPR016425 Pfam:PF04551
PIRSF:PIRSF004640 UniPathway:UPA00056 Gene3D:3.20.20.70
GO:GO:0005506 GO:GO:0051539 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0016114 SUPFAM:SSF51366 GO:GO:0019288 KO:K03526 GO:GO:0046429
TIGRFAMs:TIGR00612 eggNOG:COG0821 HOGENOM:HOG000261019 OMA:PRKLEIV
ProtClustDB:PRK00366 RefSeq:YP_181115.1 ProteinModelPortal:Q3Z9I4
STRING:Q3Z9I4 GeneID:3230317 KEGG:det:DET0369 PATRIC:21607807
BioCyc:DETH243164:GJNF-369-MONOMER Uniprot:Q3Z9I4
Length = 321
Score = 219 (82.2 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 52/132 (39%), Positives = 77/132 (58%)
Query: 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 265
+V K+ +RIG N GSL + + + MV++A +I LDF S+K
Sbjct: 89 VVRAAKEREIPIRIGVNAGSLPKDLPPELTTAQK-MVKAAMGHIKILEALDFSLIKVSLK 147
Query: 266 ASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTI 325
A + V+AYR + + + YPLH+G+TE G + G ++SA+GIG LL G+GDTI
Sbjct: 148 AFDVPTTVEAYRQIASLI-----PYPLHVGITETGTPKTGLVRSAVGIGNLLYMGIGDTI 202
Query: 326 RVSLTEPPEKEI 337
RVSLT PP++E+
Sbjct: 203 RVSLTSPPQEEV 214
Score = 143 (55.4 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 27/73 (36%), Positives = 43/73 (58%)
Query: 609 SFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPG-VSIAIMGCIVNGP 667
++ +L+ +R VSCP+C RT D+ I+A ++E + + + +A+MGC VNGP
Sbjct: 217 AYEILKSLNLRQRGPVLVSCPTCSRTEVDIVGIAARVQEALNKIDKPIRVAVMGCAVNGP 276
Query: 668 GEMADADFGYVGG 680
GE +AD G G
Sbjct: 277 GEAKEADLGIACG 289
Score = 99 (39.9 bits), Expect = 1.4e-33, Sum P(3) = 1.4e-33
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 109 MTTNDTKDVAGTVE----------EVMRIADACFEIKNSL--VQKNYNIPLVADIHFAPS 156
MT DT+++ T+ E++R+A E +L ++K IP+VADIHF
Sbjct: 1 MTKTDTRNIPATISQIKELEECGCEIIRLAIPDMEAATALKSIRKEVRIPIVADIHFDYR 60
Query: 157 VALRVAEC-FDKIRVNPGNFAD 177
+AL D +R+NPGN D
Sbjct: 61 LALAALLAGADGLRLNPGNIGD 82
>TIGR_CMR|ECH_0559 [details] [associations]
symbol:ECH_0559 "4-hydroxy-3-methylbut-2-en-1-yl
diphosphate synthase" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR016425
Pfam:PF04551 PIRSF:PIRSF004640 UniPathway:UPA00056 GO:GO:0005506
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0051539 GO:GO:0016114
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 ProtClustDB:PRK00366 HOGENOM:HOG000261017
RefSeq:YP_507371.1 STRING:Q2GGR2 GeneID:3927424 KEGG:ech:ECH_0559
PATRIC:20576584 OMA:SETECTD BioCyc:ECHA205920:GJNR-561-MONOMER
Uniprot:Q2GGR2
Length = 409
Score = 230 (86.0 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 86/300 (28%), Positives = 140/300 (46%)
Query: 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLV---QKNYN 144
T V VG+V IG +P+ VQ+M + DV EV+ +A A E+ V Q N
Sbjct: 12 TYEVKVGDVVIGGNNPVVVQSMALGGSGDVYKDAHEVLELAQAGSELVRVAVNSEQAMKN 71
Query: 145 IPLVADI---H-FAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIE 200
+P + D+ H F+ + + + ++ R+ + D A ++ + +
Sbjct: 72 VPYIRDVLVDHGFSAKMIIGCGQ-YEIARL-VNEYPDCAAALGKIRINPGNVGFGNKR-D 128
Query: 201 EVFSPLVEKCKKYGRAVRIGTNHGSL----SDRIMS----YYGDSP------RGMVESAF 246
+ F +VE K+ +RIG N GSL + ++M+ P + +V SA
Sbjct: 129 KNFEDIVEFAIKHDIPIRIGVNWGSLDKYLASKLMNDNALLINPKPDYIVLQKALVISAI 188
Query: 247 EFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGED 304
A+ ++ + + S K S ++ Y +L + +YPLHLG+TEAG G
Sbjct: 189 TSAKRAEEIGLSKNKIVISCKTSKIQDLIPVYTVLS-----NVCNYPLHLGLTEAGSGTK 243
Query: 305 GRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK----EIDPCRR-LANLGMRAAELQQGVAP 359
G + SA GI LL +G+GDTIRVSLT+ P + E+ C+ L ++G+R Q P
Sbjct: 244 GMVSSAAGISYLLLNGIGDTIRVSLTQQPGEARSIEVKLCQEILQSIGLRNFSAQVTSCP 303
Score = 111 (44.1 bits), Expect = 2.5e-23, Sum P(2) = 2.5e-23
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 612 LLQGCRMRNTKTEYVSCPSCGRT----LFDL-QEISAEIREKT----SHLPG---VSIAI 659
+LQ +RN + SCP C RT L ++I+ I+++ + PG +++A+
Sbjct: 286 ILQSIGLRNFSAQVTSCPGCNRTNPKYFHQLAKDINDYIKQRMPVWRNDNPGSENMTVAV 345
Query: 660 MGCIVNGPGEMADADFG 676
MGCIVNGPGE A+ G
Sbjct: 346 MGCIVNGPGESKHANLG 362
>TIGR_CMR|NSE_0799 [details] [associations]
symbol:NSE_0799 "1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0046429
"4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"
evidence=ISS] HAMAP:MF_00159 InterPro:IPR004588 InterPro:IPR016425
Pfam:PF04551 PIRSF:PIRSF004640 UniPathway:UPA00056 GO:GO:0005506
GO:GO:0051539 GO:GO:0016114 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0019288 KO:K03526 GO:GO:0046429 TIGRFAMs:TIGR00612
eggNOG:COG0821 ProtClustDB:PRK00366 HOGENOM:HOG000261017
RefSeq:YP_506674.1 STRING:Q2GCX2 GeneID:3931584 KEGG:nse:NSE_0799
PATRIC:22681595 OMA:RNFTPMV BioCyc:NSEN222891:GHFU-810-MONOMER
Uniprot:Q2GCX2
Length = 414
Score = 172 (65.6 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 80/298 (26%), Positives = 132/298 (44%)
Query: 91 VMVGNVAIGSE-HPIRVQTMTTNDTKD---VAGTVEEVMRIA-------DACFEIKNSLV 139
++V ++ GS +P V + +++++ +A E++RIA A I+ +L
Sbjct: 24 IVVQSMTSGSRTNPNDVSAIAVDESREAIALAKAGSELIRIAINSEKAAAAIPYIRENLD 83
Query: 140 QKNYN-IPLVA----DIHFAPSVALRVAECFDKIRVNPGN--FADRRAQFEQLEYTDDEY 192
+ + +PLV +I KIR+NPGN F +R D +
Sbjct: 84 KSGFEKVPLVGCGQYEIKRVLETQTEAIRSLGKIRINPGNIGFGSKR---------DTNF 134
Query: 193 QKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM--------------SYYGDSP 238
K ++ I CK + +RIG N GSL ++ SY G
Sbjct: 135 DKVIELI----------CK-HDLPIRIGVNWGSLDQSVLRQIMDDNAKNEKPSSYNGVLR 183
Query: 239 RGMVESAFEFARICRKLDFH--NFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGV 296
+++SA A+ ++ + S K S+ +V Y L + YPLHLG+
Sbjct: 184 CALIQSALASAKRAEEVGLSPDKIILSCKVSSFQDLVAVYSSLAEQCR-----YPLHLGL 238
Query: 297 TEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK----EIDPCRR-LANLGMR 349
TEAG G G +K+ + LL G+GDTIR SLT+ P + E++ C+ L ++G+R
Sbjct: 239 TEAGMGTSGIIKTTAALSVLLSRGIGDTIRASLTQKPGESRVIEVETCQLILQSMGLR 296
Score = 115 (45.5 bits), Expect = 5.2e-17, Sum P(2) = 5.2e-17
Identities = 34/94 (36%), Positives = 49/94 (52%)
Query: 596 EAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFD-LQEISAEIRE------- 647
+ PG+ +T +LQ +R + SCP CGRT + Q+IS+++ +
Sbjct: 273 QKPGESRVIEVETCQLILQSMGLRVFVPQVTSCPGCGRTNGNYFQQISSDLNDFIKDNLV 332
Query: 648 --KTSHLPGVS---IAIMGCIVNGPGEMADADFG 676
K +L GV +A+MGCIVNGPGE AD G
Sbjct: 333 DWKRLYL-GVENFKLAVMGCIVNGPGESKHADVG 365
Score = 72 (30.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 40/159 (25%), Positives = 68/159 (42%)
Query: 86 RKTRTVMVGNVAIGSEHPIRVQTMTTN---DTKDVAGTVEEVMRIADACFEIKNSLVQKN 142
RK+ V V V IG +PI VQ+MT+ + DV+ + R A A + + L++
Sbjct: 6 RKSLVVDVAGVRIGGGNPIVVQSMTSGSRTNPNDVSAIAVDESREAIALAKAGSELIRIA 65
Query: 143 YNIPLVADIHFAPSVALRVAEC-FDKIR-VNPGNFADRRAQFEQLEYTDDEYQKELQ--H 198
N A P + + + F+K+ V G + +R Q E + + +
Sbjct: 66 INSEKAAAA--IPYIRENLDKSGFEKVPLVGCGQYEIKRVLETQTEAIRSLGKIRINPGN 123
Query: 199 I------EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM 231
I + F ++E K+ +RIG N GSL ++
Sbjct: 124 IGFGSKRDTNFDKVIELICKHDLPIRIGVNWGSLDQSVL 162
>TIGR_CMR|APH_0442 [details] [associations]
symbol:APH_0442 "4-hydroxy-3-methylbut-2-en-1-yl
diphosphate synthase" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=ISS] [GO:0046429 "4-hydroxy-3-methylbut-2-en-1-yl
diphosphate synthase activity" evidence=ISS] InterPro:IPR004588
InterPro:IPR016425 Pfam:PF04551 PIRSF:PIRSF004640
UniPathway:UPA00056 GO:GO:0005506 GO:GO:0051539 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016114 GO:GO:0019288 KO:K03526
GO:GO:0046429 TIGRFAMs:TIGR00612 eggNOG:COG0821
ProtClustDB:PRK00366 HOGENOM:HOG000261017 OMA:RNFTPMV
RefSeq:YP_505045.1 STRING:Q2GKQ6 GeneID:3930512 KEGG:aph:APH_0442
PATRIC:20949504 BioCyc:APHA212042:GHPM-469-MONOMER Uniprot:Q2GKQ6
Length = 400
Score = 183 (69.5 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 109/362 (30%), Positives = 161/362 (44%)
Query: 86 RKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYNI 145
R ++ V VG V IG HP+ VQ+M + ++EV+ +A E+ + + +I
Sbjct: 2 RVSQAVRVGKVTIGGGHPVVVQSMALGGSGSFDRDMQEVLALAREGSELVRVAINSDESI 61
Query: 146 PLVADI------H-FAPS---------VA--LR----VAECFDKIRVNPGN--FADRRAQ 181
++ D+ H F VA LR A KIR+NPGN F D+R
Sbjct: 62 KVIPDMVDVLVKHGFDEKMIVGCGQYEVARLLRDYPTCAAALGKIRINPGNIGFGDKR-- 119
Query: 182 FEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM--SYYGDSPR 239
D+ + EEV +E K VRIG N GSL D+++ D+
Sbjct: 120 --------DK------NFEEV----IEFAIKNDIPVRIGVNWGSL-DKVLVGKLMDDNAN 160
Query: 240 GMVESAFEFARICRKLDFHNFLFSMKA------SNPVVM---VQAYRLLVAEMYV---HG 287
V + + + + L + KA SN +V+ V R LVA +Y
Sbjct: 161 LPVPESADVVK-AKALVLSAITSAKKAEGIGLPSNRIVLSCKVSKVRDLVA-VYTALARQ 218
Query: 288 WDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLT----EPPEKEIDPCRR- 342
++ LHLG+TEAG G G + S GI LL G+GDT+RVSLT E +E+ C+
Sbjct: 219 SNHALHLGLTEAGAGLKGVVSSVAGIAHLLIMGIGDTVRVSLTSLTREGRTEEVKVCKEI 278
Query: 343 LANLGMRAAELQQGVAPFEEKHRHYFD-FQRR-SG---QLPIQKEGEEVDYRGVLHRDGS 397
L +LG+R Q P +R FD FQ+ SG + E + Y GV++ +
Sbjct: 279 LQSLGLRYFTAQSTSCP--GCNRTNFDVFQKLVSGVNKYMESNMEAWKKKYPGVVNMTVA 336
Query: 398 VL 399
V+
Sbjct: 337 VM 338
Score = 121 (47.7 bits), Expect = 0.00043, P = 0.00043
Identities = 38/114 (33%), Positives = 58/114 (50%)
Query: 612 LLQGCRMRNTKTEYVSCPSCGRTLFDL-QEISAEIRE-KTSHL-------PGV---SIAI 659
+LQ +R + SCP C RT FD+ Q++ + + + S++ PGV ++A+
Sbjct: 278 ILQSLGLRYFTAQSTSCPGCNRTNFDVFQKLVSGVNKYMESNMEAWKKKYPGVVNMTVAV 337
Query: 660 MGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRG--IAMEQATDALIQLI 711
MGC+VNGPGE A+ G PGK + V V + G + Q D L Q +
Sbjct: 338 MGCVVNGPGESKHANLGL--SMPGKGEREVA-AVYEDGSKLCTIQGADILEQFL 388
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 724 709 0.00083 121 3 11 22 0.39 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 613 (65 KB)
Total size of DFA: 340 KB (2172 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 60.48u 0.18s 60.66t Elapsed: 00:00:03
Total cpu time: 60.48u 0.18s 60.66t Elapsed: 00:00:03
Start: Tue May 21 17:40:04 2013 End: Tue May 21 17:40:07 2013