Query 004907
Match_columns 724
No_of_seqs 238 out of 964
Neff 3.8
Searched_HMMs 46136
Date Thu Mar 28 14:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/004907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02925 4-hydroxy-3-methylbut 100.0 1E-204 3E-209 1685.9 61.0 716 1-724 1-733 (733)
2 PRK00694 4-hydroxy-3-methylbut 100.0 1E-186 3E-191 1517.0 53.6 585 76-721 3-606 (606)
3 PRK02048 4-hydroxy-3-methylbut 100.0 2E-184 4E-189 1509.9 53.3 591 79-718 2-611 (611)
4 PF04551 GcpE: GcpE protein; 100.0 3E-135 7E-140 1067.8 25.9 340 88-714 1-358 (359)
5 TIGR00612 ispG_gcpE 1-hydroxy- 100.0 2E-130 4E-135 1024.6 36.8 329 85-712 1-346 (346)
6 COG0821 gcpE 1-hydroxy-2-methy 100.0 4E-129 1E-133 1010.7 36.2 338 83-722 1-358 (361)
7 PRK00366 ispG 4-hydroxy-3-meth 100.0 2E-124 4E-129 986.0 37.0 333 80-714 4-356 (360)
8 PRK00694 4-hydroxy-3-methylbut 99.8 2.3E-20 4.9E-25 207.5 10.3 97 521-623 202-298 (606)
9 PRK02048 4-hydroxy-3-methylbut 99.8 4.2E-20 9.2E-25 206.6 9.2 146 521-680 198-352 (611)
10 PLN02925 4-hydroxy-3-methylbut 99.7 3.3E-17 7.2E-22 185.7 10.2 92 521-618 267-358 (733)
11 PRK00366 ispG 4-hydroxy-3-meth 99.6 2.7E-16 5.9E-21 167.8 8.3 76 521-606 175-250 (360)
12 TIGR00612 ispG_gcpE 1-hydroxy- 99.6 3.8E-16 8.2E-21 165.7 9.2 76 521-606 166-241 (346)
13 PF04551 GcpE: GcpE protein; 99.6 1.8E-15 3.9E-20 161.7 7.5 75 521-605 175-249 (359)
14 COG0821 gcpE 1-hydroxy-2-methy 99.5 9E-15 2E-19 155.0 7.1 75 521-605 168-242 (361)
15 PRK04165 acetyl-CoA decarbonyl 97.6 0.0033 7.2E-08 70.8 18.4 177 79-301 52-273 (450)
16 PRK13504 sulfite reductase sub 97.5 0.00072 1.6E-08 77.5 11.4 121 590-712 385-536 (569)
17 PRK14989 nitrite reductase sub 97.3 0.0053 1.1E-07 73.8 17.1 119 595-716 603-745 (847)
18 PLN00178 sulfite reductase 97.3 0.0014 3E-08 76.3 11.6 121 590-712 433-585 (623)
19 TIGR02042 sir ferredoxin-sulfi 97.2 0.0028 6.1E-08 73.1 12.2 122 589-712 394-546 (577)
20 TIGR02435 CobG precorrin-3B sy 97.1 0.0029 6.4E-08 69.2 11.2 105 610-716 70-201 (390)
21 TIGR02374 nitri_red_nirB nitri 97.0 0.0041 8.8E-08 73.8 11.5 117 597-716 595-733 (785)
22 PF01077 NIR_SIR: Nitrite and 97.0 0.0025 5.3E-08 60.8 7.8 88 624-712 7-119 (157)
23 PRK09566 nirA ferredoxin-nitri 97.0 0.02 4.4E-07 65.1 16.0 92 624-716 140-261 (513)
24 TIGR02041 CysI sulfite reducta 96.8 0.0046 9.9E-08 70.7 8.9 120 591-712 370-519 (541)
25 PRK09566 nirA ferredoxin-nitri 96.7 0.0071 1.5E-07 68.6 9.7 91 623-714 392-505 (513)
26 COG0155 CysI Sulfite reductase 96.6 0.011 2.3E-07 67.8 10.6 121 591-713 336-482 (510)
27 PRK09567 nirA ferredoxin-nitri 96.4 0.017 3.6E-07 67.0 10.5 125 586-712 398-557 (593)
28 PLN02431 ferredoxin--nitrite r 96.4 0.024 5.2E-07 65.9 11.4 90 623-713 466-579 (587)
29 cd00739 DHPS DHPS subgroup of 96.3 0.13 2.8E-06 54.0 15.3 164 122-327 59-243 (257)
30 TIGR00284 dihydropteroate synt 95.9 0.84 1.8E-05 52.6 20.7 210 90-349 137-376 (499)
31 PRK00979 tetrahydromethanopter 95.7 0.8 1.7E-05 50.0 18.3 172 86-299 6-229 (308)
32 PRK13504 sulfite reductase sub 95.5 0.037 8E-07 63.8 8.2 90 624-715 149-295 (569)
33 TIGR01496 DHPS dihydropteroate 95.5 0.37 8E-06 50.6 14.9 174 122-345 58-252 (257)
34 TIGR02041 CysI sulfite reducta 95.5 0.28 6.1E-06 56.4 15.0 87 628-716 141-280 (541)
35 TIGR00381 cdhD CO dehydrogenas 95.2 0.53 1.1E-05 52.7 15.5 128 139-308 183-325 (389)
36 TIGR02435 CobG precorrin-3B sy 94.9 0.1 2.3E-06 57.3 8.9 73 610-683 310-389 (390)
37 cd00423 Pterin_binding Pterin 94.9 1.3 2.8E-05 46.2 16.5 178 122-340 59-253 (258)
38 PLN02431 ferredoxin--nitrite r 94.4 0.26 5.7E-06 57.5 10.9 104 611-715 192-331 (587)
39 TIGR02066 dsrB sulfite reducta 94.3 0.77 1.7E-05 50.3 13.7 56 624-680 103-168 (341)
40 TIGR02912 sulfite_red_C sulfit 93.9 0.48 1E-05 50.7 11.0 57 624-681 102-162 (314)
41 PRK07535 methyltetrahydrofolat 93.7 2 4.2E-05 45.5 15.0 139 123-303 53-203 (261)
42 PRK12595 bifunctional 3-deoxy- 93.1 1.8 3.9E-05 47.9 13.9 164 86-300 102-298 (360)
43 TIGR01361 DAHP_synth_Bsub phos 93.0 5.2 0.00011 42.4 16.7 149 88-282 11-192 (260)
44 PRK04452 acetyl-CoA decarbonyl 92.9 1.8 3.9E-05 47.4 13.4 122 131-297 112-249 (319)
45 PRK09567 nirA ferredoxin-nitri 91.4 0.61 1.3E-05 54.5 8.3 91 624-715 190-310 (593)
46 TIGR00542 hxl6Piso_put hexulos 89.4 24 0.00053 36.5 17.1 182 131-344 54-268 (279)
47 PRK11613 folP dihydropteroate 88.8 21 0.00045 38.7 16.4 164 142-345 88-267 (282)
48 PRK13398 3-deoxy-7-phosphohept 88.5 11 0.00024 40.2 14.1 133 86-264 11-169 (266)
49 TIGR02082 metH 5-methyltetrahy 87.8 20 0.00042 45.8 17.7 194 115-344 365-607 (1178)
50 COG2221 DsrA Dissimilatory sul 86.8 0.85 1.8E-05 49.9 4.7 56 624-680 103-164 (317)
51 PRK08673 3-deoxy-7-phosphohept 85.4 43 0.00094 37.2 16.9 132 87-264 78-235 (335)
52 TIGR02064 dsrA sulfite reducta 85.1 1.3 2.9E-05 49.7 5.4 56 624-680 156-222 (402)
53 PRK09490 metH B12-dependent me 83.7 26 0.00056 45.0 16.0 194 115-344 381-623 (1229)
54 PF13913 zf-C2HC_2: zinc-finge 82.3 1 2.2E-05 31.9 1.9 18 624-642 1-18 (25)
55 cd03316 MR_like Mandelate race 81.1 8.9 0.00019 41.2 9.5 97 98-221 186-298 (357)
56 cd03315 MLE_like Muconate lact 80.7 10 0.00022 39.4 9.4 82 116-221 141-238 (265)
57 PLN00178 sulfite reductase 80.0 12 0.00025 44.5 10.7 91 624-716 183-348 (623)
58 TIGR01502 B_methylAsp_ase meth 79.5 9 0.00019 43.3 9.2 75 130-226 283-362 (408)
59 PRK09058 coproporphyrinogen II 79.2 17 0.00037 41.1 11.3 69 206-277 165-233 (449)
60 cd00308 enolase_like Enolase-s 78.6 12 0.00026 37.9 9.0 61 140-222 141-204 (229)
61 PRK13397 3-deoxy-7-phosphohept 78.5 68 0.0015 34.4 14.8 122 130-300 67-195 (250)
62 PRK13813 orotidine 5'-phosphat 76.5 55 0.0012 32.9 12.9 85 146-263 55-146 (215)
63 COG0635 HemN Coproporphyrinoge 76.4 20 0.00044 40.5 10.8 63 206-272 139-202 (416)
64 COG1410 MetH Methionine syntha 75.7 23 0.0005 43.2 11.3 172 139-343 93-285 (842)
65 cd07948 DRE_TIM_HCS Saccharomy 74.2 72 0.0016 33.9 13.6 104 147-282 66-182 (262)
66 PRK13396 3-deoxy-7-phosphohept 73.2 85 0.0018 35.3 14.4 163 87-300 81-282 (352)
67 cd01137 PsaA Metal binding pro 72.9 14 0.00031 39.2 8.1 127 98-235 34-195 (287)
68 cd03321 mandelate_racemase Man 72.0 14 0.00031 40.1 8.1 90 98-217 183-291 (355)
69 PRK02412 aroD 3-dehydroquinate 71.6 1.4E+02 0.003 31.5 19.4 178 90-308 3-212 (253)
70 PRK09856 fructoselysine 3-epim 71.4 20 0.00042 36.8 8.5 80 165-268 104-184 (275)
71 cd03317 NAAAR N-acylamino acid 70.8 20 0.00044 38.7 8.8 58 141-220 225-285 (354)
72 PRK12457 2-dehydro-3-deoxyphos 70.7 14 0.00031 40.1 7.5 87 130-262 75-163 (281)
73 PF01261 AP_endonuc_2: Xylose 70.6 34 0.00073 32.6 9.4 95 165-282 85-185 (213)
74 cd03319 L-Ala-DL-Glu_epimerase 70.5 24 0.00052 37.5 9.2 59 140-220 224-285 (316)
75 PF00809 Pterin_bind: Pterin b 69.6 39 0.00085 34.4 10.1 143 120-296 52-203 (210)
76 PF02591 DUF164: Putative zinc 69.2 2.4 5.2E-05 34.8 1.1 13 623-635 44-56 (56)
77 PRK14017 galactonate dehydrata 68.9 19 0.0004 39.7 8.2 61 140-222 224-287 (382)
78 PRK09432 metF 5,10-methylenete 68.7 50 0.0011 35.7 11.2 113 144-263 120-275 (296)
79 PF03599 CdhD: CO dehydrogenas 67.8 75 0.0016 36.2 12.6 139 102-299 71-218 (386)
80 cd07939 DRE_TIM_NifV Streptomy 67.7 1.1E+02 0.0023 32.1 13.0 101 142-267 59-161 (259)
81 PF07293 DUF1450: Protein of u 67.3 19 0.00041 32.4 6.4 65 640-717 14-78 (78)
82 cd01020 TroA_b Metal binding p 67.3 18 0.00039 37.8 7.3 168 98-282 19-230 (264)
83 TIGR01928 menC_lowGC/arch o-su 66.9 27 0.00059 37.7 8.8 60 140-221 219-281 (324)
84 TIGR02042 sir ferredoxin-sulfi 66.8 18 0.00039 42.6 7.9 64 651-716 218-306 (577)
85 PRK07028 bifunctional hexulose 66.1 92 0.002 35.0 13.0 106 145-298 58-173 (430)
86 PF07476 MAAL_C: Methylasparta 66.1 21 0.00046 38.1 7.4 82 116-219 87-194 (248)
87 cd06556 ICL_KPHMT Members of t 66.0 65 0.0014 34.1 11.1 90 205-308 116-208 (240)
88 cd03313 enolase Enolase: Enola 65.9 36 0.00077 38.3 9.7 66 130-220 293-362 (408)
89 PRK05198 2-dehydro-3-deoxyphos 65.9 20 0.00042 38.8 7.3 87 130-262 69-157 (264)
90 cd03325 D-galactonate_dehydrat 65.9 23 0.0005 38.6 8.1 60 140-221 223-285 (352)
91 PRK00311 panB 3-methyl-2-oxobu 65.8 91 0.002 33.6 12.2 125 142-307 73-212 (264)
92 cd03318 MLE Muconate Lactonizi 65.7 29 0.00063 37.7 8.8 57 142-220 237-296 (365)
93 PRK08207 coproporphyrinogen II 65.2 26 0.00057 40.4 8.7 72 205-279 270-345 (488)
94 PRK06294 coproporphyrinogen II 65.2 31 0.00067 38.0 9.0 78 206-287 105-183 (370)
95 PRK08599 coproporphyrinogen II 65.0 37 0.00081 37.1 9.5 91 206-303 102-197 (377)
96 PRK04180 pyridoxal biosynthesi 64.9 1.2E+02 0.0025 33.6 12.9 130 139-293 116-262 (293)
97 cd00958 DhnA Class I fructose- 64.1 1.5E+02 0.0032 30.2 13.0 38 243-280 194-234 (235)
98 COG2877 KdsA 3-deoxy-D-manno-o 63.8 17 0.00037 39.1 6.3 165 89-305 3-206 (279)
99 PRK07379 coproporphyrinogen II 63.3 38 0.00082 37.8 9.3 54 206-264 117-172 (400)
100 PRK09997 hydroxypyruvate isome 63.2 1.9E+02 0.004 29.8 15.2 144 165-342 99-252 (258)
101 PRK00077 eno enolase; Provisio 62.8 49 0.0011 37.5 10.1 86 115-227 261-367 (425)
102 PRK12656 fructose-6-phosphate 62.7 61 0.0013 34.0 10.1 64 98-168 51-130 (222)
103 cd03329 MR_like_4 Mandelate ra 62.4 56 0.0012 35.8 10.3 96 98-220 186-298 (368)
104 PRK08898 coproporphyrinogen II 62.1 38 0.00083 37.6 9.0 54 207-264 125-178 (394)
105 PRK15129 L-Ala-D/L-Glu epimera 62.1 35 0.00077 36.7 8.5 60 142-223 217-277 (321)
106 PRK13753 dihydropteroate synth 61.5 2.5E+02 0.0054 30.7 16.0 181 122-345 60-258 (279)
107 TIGR01949 AroFGH_arch predicte 61.5 70 0.0015 33.4 10.3 138 112-292 33-195 (258)
108 PRK08446 coproporphyrinogen II 61.1 47 0.001 36.3 9.4 71 206-280 100-175 (350)
109 KOG0560 Sulfite reductase (fer 60.6 22 0.00047 41.6 6.8 95 617-712 492-602 (638)
110 cd03322 rpsA The starvation se 60.5 42 0.00091 36.8 8.9 98 97-221 159-272 (361)
111 PRK05799 coproporphyrinogen II 60.0 49 0.0011 36.2 9.3 57 205-264 100-156 (374)
112 TIGR02534 mucon_cyclo muconate 59.7 49 0.0011 36.2 9.2 58 141-220 235-295 (368)
113 cd03320 OSBS o-Succinylbenzoat 59.5 33 0.00072 35.7 7.6 58 143-222 175-235 (263)
114 cd03324 rTSbeta_L-fuconate_deh 59.1 34 0.00074 38.6 8.1 90 98-217 237-348 (415)
115 smart00729 Elp3 Elongator prot 58.9 65 0.0014 30.3 8.8 50 203-270 70-124 (216)
116 COG1579 Zn-ribbon protein, pos 58.9 3.5 7.7E-05 43.7 0.4 20 617-637 214-233 (239)
117 PRK13210 putative L-xylulose 5 58.7 87 0.0019 32.2 10.4 107 131-264 54-181 (284)
118 PRK13523 NADPH dehydrogenase N 58.2 38 0.00082 37.2 8.1 95 193-290 134-243 (337)
119 TIGR03849 arch_ComA phosphosul 58.2 19 0.00042 38.2 5.6 57 202-270 42-98 (237)
120 cd03327 MR_like_2 Mandelate ra 57.8 48 0.001 36.0 8.7 56 141-218 219-277 (341)
121 PRK09989 hypothetical protein; 57.3 87 0.0019 32.2 10.1 87 156-264 88-177 (258)
122 PRK09057 coproporphyrinogen II 57.2 58 0.0013 36.0 9.3 54 206-264 106-160 (380)
123 PF07503 zf-HYPF: HypF finger; 57.1 4.5 9.7E-05 31.2 0.6 18 618-635 14-31 (35)
124 cd01019 ZnuA Zinc binding prot 57.1 30 0.00065 36.7 6.9 125 98-235 20-197 (286)
125 PRK05628 coproporphyrinogen II 56.9 55 0.0012 35.9 9.1 92 206-303 110-205 (375)
126 PRK05660 HemN family oxidoredu 56.3 54 0.0012 36.3 8.9 57 206-265 109-165 (378)
127 TIGR02631 xylA_Arthro xylose i 55.8 1E+02 0.0022 34.7 10.9 118 131-264 70-214 (382)
128 cd03328 MR_like_3 Mandelate ra 55.5 54 0.0012 35.9 8.7 56 143-220 234-292 (352)
129 cd04747 OYE_like_5_FMN Old yel 55.2 52 0.0011 36.7 8.6 101 193-294 136-254 (361)
130 PRK02901 O-succinylbenzoate sy 55.0 60 0.0013 35.6 8.9 55 141-220 181-238 (327)
131 PTZ00081 enolase; Provisional 54.7 56 0.0012 37.5 8.9 74 130-228 313-390 (439)
132 TIGR01859 fruc_bis_ald_ fructo 54.5 1.4E+02 0.0029 32.3 11.3 148 101-292 40-203 (282)
133 PRK09249 coproporphyrinogen II 54.3 60 0.0013 36.8 9.0 87 205-297 152-238 (453)
134 cd00019 AP2Ec AP endonuclease 54.2 83 0.0018 32.6 9.4 80 165-268 99-179 (279)
135 TIGR00538 hemN oxygen-independ 54.1 76 0.0017 35.9 9.8 72 205-280 152-228 (455)
136 TIGR03234 OH-pyruv-isom hydrox 53.9 1.3E+02 0.0029 30.6 10.7 84 165-270 98-182 (254)
137 PF00682 HMGL-like: HMGL-like 53.2 70 0.0015 32.5 8.5 72 196-282 103-178 (237)
138 cd00956 Transaldolase_FSA Tran 53.0 90 0.002 32.2 9.3 98 101-221 51-162 (211)
139 cd06557 KPHMT-like Ketopantoat 52.3 1.9E+02 0.0041 31.0 11.8 123 142-307 70-209 (254)
140 cd02803 OYE_like_FMN_family Ol 52.0 71 0.0015 34.0 8.7 101 193-294 133-247 (327)
141 TIGR02109 PQQ_syn_pqqE coenzym 51.8 1.3E+02 0.0029 32.4 10.9 95 202-339 69-164 (358)
142 PF00919 UPF0004: Uncharacteri 51.6 16 0.00034 33.5 3.3 48 623-670 37-85 (98)
143 cd03314 MAL Methylaspartate am 51.3 52 0.0011 36.8 7.8 67 133-221 250-319 (369)
144 cd04733 OYE_like_2_FMN Old yel 51.0 95 0.0021 33.7 9.6 74 193-267 141-224 (338)
145 TIGR00539 hemN_rel putative ox 50.5 79 0.0017 34.5 9.0 56 206-265 102-158 (360)
146 PF04423 Rad50_zn_hook: Rad50 50.0 5.8 0.00013 32.3 0.2 24 627-651 22-48 (54)
147 PRK07329 hypothetical protein; 49.7 83 0.0018 32.7 8.6 77 200-288 164-240 (246)
148 PRK08208 coproporphyrinogen II 49.6 80 0.0017 35.6 9.0 73 205-280 142-218 (430)
149 TIGR02090 LEU1_arch isopropylm 49.6 2.4E+02 0.0051 31.4 12.5 118 140-282 59-182 (363)
150 cd07939 DRE_TIM_NifV Streptomy 49.6 88 0.0019 32.7 8.8 72 207-283 75-148 (259)
151 TIGR02494 PFLE_PFLC glycyl-rad 49.2 97 0.0021 32.5 9.1 95 203-343 143-240 (295)
152 PRK15072 bifunctional D-altron 48.7 67 0.0015 35.9 8.2 59 140-220 253-314 (404)
153 PRK12655 fructose-6-phosphate 48.6 1.4E+02 0.003 31.4 9.9 64 98-168 50-128 (220)
154 TIGR01060 eno phosphopyruvate 48.5 1.2E+02 0.0026 34.5 10.2 68 130-226 294-367 (425)
155 cd01145 TroA_c Periplasmic bin 48.4 71 0.0015 32.1 7.7 125 98-235 19-184 (203)
156 PRK13303 L-aspartate dehydroge 48.1 52 0.0011 34.7 6.9 127 155-334 75-212 (265)
157 PRK13669 hypothetical protein; 48.0 67 0.0014 29.1 6.5 68 637-717 11-78 (78)
158 PRK02714 O-succinylbenzoate sy 46.9 80 0.0017 34.2 8.2 58 140-222 213-273 (320)
159 cd01016 TroA Metal binding pro 46.8 78 0.0017 33.5 8.0 155 98-263 18-217 (276)
160 cd00740 MeTr MeTr subgroup of 46.4 3.9E+02 0.0085 28.4 15.5 120 143-297 69-205 (252)
161 COG5012 Predicted cobalamin bi 46.1 33 0.00072 36.4 5.0 56 504-563 138-193 (227)
162 PF08209 Sgf11: Sgf11 (transcr 45.9 10 0.00023 29.0 1.0 12 623-634 2-13 (33)
163 PRK14016 cyanophycin synthetas 45.0 83 0.0018 38.2 8.7 76 205-281 164-284 (727)
164 PRK05105 O-succinylbenzoate sy 44.3 50 0.0011 35.8 6.2 61 140-222 205-266 (322)
165 cd07947 DRE_TIM_Re_CS Clostrid 44.1 1.6E+02 0.0036 31.7 10.0 65 193-267 107-172 (279)
166 PRK08255 salicylyl-CoA 5-hydro 44.1 81 0.0018 38.2 8.5 97 193-290 543-654 (765)
167 PRK13361 molybdenum cofactor b 44.1 98 0.0021 33.5 8.4 49 202-269 77-127 (329)
168 cd03323 D-glucarate_dehydratas 43.6 67 0.0014 35.9 7.2 58 142-221 259-319 (395)
169 cd04729 NanE N-acetylmannosami 43.5 3.7E+02 0.0079 27.3 14.7 97 100-221 9-130 (219)
170 TIGR01927 menC_gamma/gm+ o-suc 43.5 71 0.0015 34.4 7.2 59 141-221 203-264 (307)
171 TIGR01362 KDO8P_synth 3-deoxy- 43.3 73 0.0016 34.5 7.1 87 130-262 61-149 (258)
172 PF08901 DUF1847: Protein of u 43.2 61 0.0013 32.8 6.1 54 202-270 42-95 (157)
173 TIGR03471 HpnJ hopanoid biosyn 43.1 4.7E+02 0.01 29.7 13.9 74 205-281 288-364 (472)
174 TIGR03822 AblA_like_2 lysine-2 42.6 1.2E+02 0.0027 32.9 8.9 97 202-300 154-272 (321)
175 PF01261 AP_endonuc_2: Xylose 42.3 70 0.0015 30.5 6.2 64 200-264 26-92 (213)
176 TIGR03278 methan_mark_10 putat 42.2 60 0.0013 36.9 6.6 51 202-270 90-142 (404)
177 PRK13347 coproporphyrinogen II 41.9 1.1E+02 0.0024 34.7 8.8 73 205-281 153-230 (453)
178 PF11023 DUF2614: Protein of u 41.3 14 0.0003 35.5 1.2 23 612-634 56-78 (114)
179 PRK07328 histidinol-phosphatas 41.2 78 0.0017 33.2 6.9 76 201-288 177-252 (269)
180 cd01335 Radical_SAM Radical SA 41.2 1.7E+02 0.0037 26.9 8.5 51 203-271 61-113 (204)
181 TIGR01458 HAD-SF-IIA-hyp3 HAD- 40.8 67 0.0014 33.5 6.3 61 202-262 25-91 (257)
182 cd02931 ER_like_FMN Enoate red 40.8 1E+02 0.0022 34.4 8.0 74 194-267 143-226 (382)
183 PRK11858 aksA trans-homoaconit 40.6 4.4E+02 0.0095 29.5 12.9 121 139-282 62-186 (378)
184 PRK00230 orotidine 5'-phosphat 40.5 3.6E+02 0.0078 28.0 11.5 124 112-263 9-155 (230)
185 PRK12653 fructose-6-phosphate 40.4 1.9E+02 0.0041 30.4 9.4 65 98-169 50-129 (220)
186 PRK05904 coproporphyrinogen II 40.3 1.5E+02 0.0032 32.8 9.1 72 206-280 105-180 (353)
187 COG0854 PdxJ Pyridoxal phospha 40.0 1.4E+02 0.003 32.1 8.3 85 121-224 107-192 (243)
188 TIGR02668 moaA_archaeal probab 40.0 1.1E+02 0.0024 32.2 7.9 49 202-269 72-121 (302)
189 TIGR03470 HpnH hopanoid biosyn 39.8 1.4E+02 0.0029 32.5 8.6 79 201-281 87-189 (318)
190 PF13407 Peripla_BP_4: Peripla 39.7 2.6E+02 0.0056 27.7 10.0 119 139-284 25-149 (257)
191 COG1326 Uncharacterized archae 39.1 21 0.00045 37.2 2.2 22 622-644 3-24 (201)
192 cd02930 DCR_FMN 2,4-dienoyl-Co 38.8 1.4E+02 0.003 32.8 8.6 73 194-267 130-212 (353)
193 cd06808 PLPDE_III Type III Pyr 38.7 1.1E+02 0.0024 29.7 7.2 46 203-256 93-140 (211)
194 PRK13209 L-xylulose 5-phosphat 38.3 1.4E+02 0.0031 30.8 8.2 112 131-268 59-190 (283)
195 PF00793 DAHP_synth_1: DAHP sy 38.1 1.1E+02 0.0025 32.8 7.6 71 139-247 83-153 (270)
196 cd00945 Aldolase_Class_I Class 37.8 1.6E+02 0.0035 28.1 7.9 67 204-282 38-109 (201)
197 PF01791 DeoC: DeoC/LacD famil 37.7 1.5E+02 0.0032 30.5 8.1 142 130-301 42-201 (236)
198 cd03315 MLE_like Muconate lact 37.6 3.5E+02 0.0075 28.1 10.9 84 214-330 129-212 (265)
199 cd03174 DRE_TIM_metallolyase D 37.5 4.6E+02 0.01 26.7 14.6 117 144-282 66-187 (265)
200 cd02801 DUS_like_FMN Dihydrour 37.4 3.2E+02 0.0068 27.4 10.3 103 141-265 51-160 (231)
201 cd01017 AdcA Metal binding pro 37.1 1.4E+02 0.0031 31.5 8.1 125 98-235 20-189 (282)
202 PRK05301 pyrroloquinoline quin 37.0 2.8E+02 0.006 30.4 10.5 30 202-231 78-107 (378)
203 PF13344 Hydrolase_6: Haloacid 36.7 67 0.0015 29.1 4.9 55 203-257 19-79 (101)
204 COG1902 NemA NADH:flavin oxido 36.5 6.7E+02 0.015 28.3 13.8 98 193-290 141-254 (363)
205 cd02933 OYE_like_FMN Old yello 36.5 1.6E+02 0.0034 32.4 8.6 96 193-290 144-257 (338)
206 cd00945 Aldolase_Class_I Class 36.1 3.9E+02 0.0084 25.4 11.4 119 116-264 11-150 (201)
207 COG4359 Uncharacterized conser 36.0 45 0.00098 35.0 4.0 21 203-224 78-98 (220)
208 PF13192 Thioredoxin_3: Thiore 36.0 26 0.00057 29.8 2.1 65 627-709 9-76 (76)
209 cd04725 OMP_decarboxylase_like 35.8 4.4E+02 0.0095 27.0 11.1 105 133-266 40-152 (216)
210 cd07944 DRE_TIM_HOA_like 4-hyd 35.6 3.3E+02 0.0071 29.0 10.5 103 142-282 71-179 (266)
211 PRK12339 2-phosphoglycerate ki 35.4 2.4E+02 0.0052 28.8 9.1 99 117-217 72-178 (197)
212 cd04734 OYE_like_3_FMN Old yel 35.3 1.4E+02 0.0031 32.7 8.1 97 193-290 133-245 (343)
213 PRK05588 histidinol-phosphatas 34.9 1.5E+02 0.0033 30.7 7.8 79 199-289 164-242 (255)
214 PRK02935 hypothetical protein; 34.9 20 0.00044 34.1 1.3 20 615-634 60-79 (110)
215 TIGR02329 propionate_PrpR prop 34.9 6.9E+02 0.015 29.5 13.8 110 114-235 36-163 (526)
216 PRK13843 conjugal transfer pro 34.8 13 0.00028 38.8 0.0 43 261-303 44-88 (207)
217 cd07941 DRE_TIM_LeuA3 Desulfob 34.8 1.9E+02 0.004 30.7 8.5 73 198-282 116-192 (273)
218 TIGR02660 nifV_homocitr homoci 34.8 6.8E+02 0.015 27.8 13.9 114 144-282 64-183 (365)
219 COG2108 Uncharacterized conser 34.7 1.2E+02 0.0025 34.3 7.1 166 156-345 124-322 (353)
220 PF01297 TroA: Periplasmic sol 34.4 44 0.00096 34.3 3.8 125 98-235 15-168 (256)
221 COG1456 CdhE CO dehydrogenase/ 34.2 5.8E+02 0.013 29.5 12.3 128 88-263 66-237 (467)
222 cd07938 DRE_TIM_HMGL 3-hydroxy 34.1 1.7E+02 0.0036 31.3 8.1 75 197-282 110-190 (274)
223 PRK15440 L-rhamnonate dehydrat 33.9 1.7E+02 0.0036 33.0 8.4 57 143-224 260-319 (394)
224 PLN02428 lipoic acid synthase 33.9 7.4E+02 0.016 28.0 13.5 148 102-282 148-312 (349)
225 TIGR01212 radical SAM protein, 33.6 2E+02 0.0044 31.0 8.7 75 205-281 127-204 (302)
226 PRK08185 hypothetical protein; 33.4 3.1E+02 0.0067 30.0 10.0 152 101-292 37-201 (283)
227 PHA00616 hypothetical protein 32.6 31 0.00066 28.1 1.8 26 627-652 3-28 (44)
228 cd07940 DRE_TIM_IPMS 2-isoprop 32.4 2.5E+02 0.0055 29.5 9.0 67 201-282 114-184 (268)
229 PF09538 FYDLN_acid: Protein o 32.3 17 0.00037 34.3 0.4 14 627-640 11-24 (108)
230 TIGR02635 RhaI_grampos L-rhamn 32.3 2.5E+02 0.0055 31.8 9.4 122 202-329 70-210 (378)
231 cd00439 Transaldolase Transald 32.1 3.8E+02 0.0081 28.6 10.2 71 101-175 84-171 (252)
232 cd04735 OYE_like_4_FMN Old yel 32.0 2.2E+02 0.0047 31.4 8.7 98 193-290 136-251 (353)
233 PLN00191 enolase 31.6 2.7E+02 0.0058 32.4 9.6 79 115-220 295-394 (457)
234 COG0176 MipB Transaldolase [Ca 31.3 78 0.0017 33.9 5.0 103 533-662 73-180 (239)
235 cd03326 MR_like_1 Mandelate ra 31.2 1.8E+02 0.0039 32.6 8.1 56 140-217 252-314 (385)
236 KOG1447 GTP-specific succinyl- 31.1 55 0.0012 36.1 3.9 43 660-708 285-329 (412)
237 TIGR00559 pdxJ pyridoxine 5'-p 31.0 1.2E+02 0.0027 32.5 6.3 77 131-225 112-189 (237)
238 PF10566 Glyco_hydro_97: Glyco 30.7 98 0.0021 33.6 5.7 72 201-287 73-150 (273)
239 COG2051 RPS27A Ribosomal prote 30.0 21 0.00045 31.5 0.5 14 623-636 36-49 (67)
240 PRK13762 tRNA-modifying enzyme 29.9 1.3E+02 0.0028 33.0 6.5 48 202-270 146-193 (322)
241 cd00377 ICL_PEPM Members of th 29.9 3.2E+02 0.007 28.7 9.2 128 142-300 67-207 (243)
242 TIGR03128 RuMP_HxlA 3-hexulose 29.6 2.6E+02 0.0056 27.8 8.1 53 144-220 52-108 (206)
243 COG0031 CysK Cysteine synthase 29.5 8.2E+02 0.018 27.2 14.3 112 597-718 147-262 (300)
244 PRK09545 znuA high-affinity zi 29.5 1.8E+02 0.0038 31.6 7.5 125 98-235 41-221 (311)
245 PRK01362 putative translaldola 29.2 3.1E+02 0.0066 28.7 8.8 65 102-173 52-131 (214)
246 cd02932 OYE_YqiM_FMN Old yello 29.0 2.6E+02 0.0055 30.4 8.6 97 193-290 146-257 (336)
247 PRK09856 fructoselysine 3-epim 29.0 1.9E+02 0.0042 29.6 7.4 89 202-293 48-148 (275)
248 COG3457 Predicted amino acid r 28.9 1.4E+02 0.0031 33.6 6.6 69 196-294 10-78 (353)
249 TIGR02026 BchE magnesium-proto 28.5 9.7E+02 0.021 27.7 13.9 75 205-282 288-365 (497)
250 TIGR00067 glut_race glutamate 28.5 1.5E+02 0.0032 31.3 6.5 55 234-298 37-93 (251)
251 COG2896 MoaA Molybdenum cofact 28.5 4.6E+02 0.0099 29.4 10.4 76 204-282 101-179 (322)
252 PRK10128 2-keto-3-deoxy-L-rham 28.2 2.2E+02 0.0047 30.7 7.8 61 199-284 195-255 (267)
253 TIGR00542 hxl6Piso_put hexulos 28.1 4.1E+02 0.0089 27.6 9.6 51 200-257 93-147 (279)
254 COG1251 NirB NAD(P)H-nitrite r 28.0 2.2E+02 0.0048 35.3 8.5 114 590-709 587-721 (793)
255 TIGR00875 fsa_talC_mipB fructo 28.0 3.4E+02 0.0073 28.4 8.9 65 102-173 52-131 (213)
256 PRK09381 trxA thioredoxin; Pro 27.9 1.1E+02 0.0023 27.0 4.6 81 623-715 26-108 (109)
257 TIGR01093 aroD 3-dehydroquinat 27.7 6.9E+02 0.015 25.7 11.2 90 201-308 105-194 (228)
258 PRK09997 hydroxypyruvate isome 27.7 2.3E+02 0.005 29.1 7.6 60 201-266 85-144 (258)
259 PRK14351 ligA NAD-dependent DN 27.6 29 0.00062 41.9 1.2 39 588-632 391-430 (689)
260 PRK03170 dihydrodipicolinate s 27.2 4.2E+02 0.009 28.1 9.6 106 145-282 11-125 (292)
261 PRK15014 6-phospho-beta-glucos 27.1 1.8E+02 0.0039 33.7 7.4 51 204-254 113-164 (477)
262 PRK00507 deoxyribose-phosphate 26.9 7.5E+02 0.016 25.9 11.4 121 130-282 45-175 (221)
263 PF06677 Auto_anti-p27: Sjogre 26.6 56 0.0012 26.1 2.3 27 606-637 3-29 (41)
264 PRK15452 putative protease; Pr 26.5 2.8E+02 0.006 32.1 8.6 129 155-331 13-142 (443)
265 PRK00208 thiG thiazole synthas 26.4 8.7E+02 0.019 26.5 11.8 150 70-282 65-226 (250)
266 TIGR00190 thiC thiamine biosyn 26.1 1.1E+03 0.024 27.6 13.4 128 110-264 69-221 (423)
267 PRK09852 cryptic 6-phospho-bet 26.1 2E+02 0.0042 33.4 7.4 52 203-254 114-166 (474)
268 PRK07475 hypothetical protein; 26.1 2.7E+02 0.0058 29.3 7.8 67 213-292 38-104 (245)
269 COG0856 Orotate phosphoribosyl 26.1 3.4E+02 0.0074 28.5 8.2 116 182-310 14-135 (203)
270 cd00003 PNPsynthase Pyridoxine 25.9 2.1E+02 0.0044 30.8 6.9 77 131-225 112-189 (234)
271 PRK07107 inosine 5-monophospha 25.7 86 0.0019 36.6 4.5 65 96-169 311-379 (502)
272 cd07940 DRE_TIM_IPMS 2-isoprop 25.6 3.2E+02 0.007 28.7 8.4 75 206-285 74-154 (268)
273 TIGR00126 deoC deoxyribose-pho 25.4 7.9E+02 0.017 25.7 11.8 121 130-282 41-171 (211)
274 COG0068 HypF Hydrogenase matur 25.3 44 0.00095 40.7 2.1 44 616-659 164-215 (750)
275 PRK13789 phosphoribosylamine-- 25.0 1E+02 0.0023 34.8 5.0 33 145-177 7-41 (426)
276 PRK05692 hydroxymethylglutaryl 24.7 5.4E+02 0.012 27.8 10.0 75 197-282 116-196 (287)
277 cd04728 ThiG Thiazole synthase 24.6 5.7E+02 0.012 27.8 9.9 153 70-282 65-226 (248)
278 COG5016 Pyruvate/oxaloacetate 24.6 5.9E+02 0.013 29.9 10.5 111 98-210 137-279 (472)
279 PRK07709 fructose-bisphosphate 24.5 9.3E+02 0.02 26.4 11.7 89 520-622 42-133 (285)
280 PF04055 Radical_SAM: Radical 24.5 4.4E+02 0.0094 23.7 8.0 70 205-278 91-165 (166)
281 PF06180 CbiK: Cobalt chelatas 24.3 4.7E+02 0.01 28.3 9.4 153 112-301 11-183 (262)
282 cd01018 ZntC Metal binding pro 24.3 3.1E+02 0.0067 28.7 8.0 125 98-235 19-188 (266)
283 PRK00420 hypothetical protein; 24.1 76 0.0016 30.4 3.1 29 603-636 6-34 (112)
284 TIGR01210 conserved hypothetic 24.1 4.2E+02 0.0091 28.8 9.1 54 205-263 118-174 (313)
285 cd07943 DRE_TIM_HOA 4-hydroxy- 24.1 5.2E+02 0.011 27.1 9.5 66 202-282 113-182 (263)
286 KOG4080 Mitochondrial ribosoma 24.0 48 0.001 33.9 1.8 65 589-653 57-131 (176)
287 cd04727 pdxS PdxS is a subunit 24.0 1E+03 0.022 26.4 12.2 120 131-291 104-251 (283)
288 TIGR02090 LEU1_arch isopropylm 23.9 3.5E+02 0.0076 30.1 8.6 73 206-283 76-150 (363)
289 PLN03033 2-dehydro-3-deoxyphos 23.9 1.2E+02 0.0026 33.5 4.9 87 130-262 75-163 (290)
290 PLN02849 beta-glucosidase 23.9 2.5E+02 0.0055 32.9 7.8 57 194-254 116-173 (503)
291 TIGR03820 lys_2_3_AblA lysine- 23.8 3.2E+02 0.007 31.5 8.5 91 203-295 174-285 (417)
292 COG1334 FlaG Uncharacterized f 23.7 2.1E+02 0.0046 27.9 6.0 65 637-719 50-117 (120)
293 PRK11840 bifunctional sulfur c 23.7 1.1E+03 0.024 26.7 13.4 104 137-282 192-300 (326)
294 TIGR02068 cya_phycin_syn cyano 23.6 2.1E+02 0.0046 35.4 7.5 77 204-281 162-283 (864)
295 PF00701 DHDPS: Dihydrodipicol 23.6 6.1E+02 0.013 26.8 10.0 107 145-282 11-125 (289)
296 cd02996 PDI_a_ERp44 PDIa famil 23.6 51 0.0011 29.1 1.8 81 623-708 23-105 (108)
297 TIGR02300 FYDLN_acid conserved 23.3 33 0.0007 33.7 0.5 14 627-640 11-24 (129)
298 PRK07956 ligA NAD-dependent DN 23.3 28 0.00061 41.8 0.1 43 588-632 369-411 (665)
299 PF14639 YqgF: Holliday-juncti 23.3 2.5E+02 0.0055 27.7 6.7 89 201-319 53-141 (150)
300 cd03309 CmuC_like CmuC_like. P 23.1 2.1E+02 0.0045 31.5 6.6 60 584-648 258-318 (321)
301 PF07295 DUF1451: Protein of u 23.1 36 0.00079 33.7 0.8 55 541-637 88-142 (146)
302 PF00923 Transaldolase: Transa 23.1 1.8E+02 0.0039 31.2 6.1 62 99-164 74-151 (287)
303 PF14205 Cys_rich_KTR: Cystein 23.0 44 0.00095 28.5 1.2 12 622-633 1-12 (55)
304 TIGR01302 IMP_dehydrog inosine 22.9 3.8E+02 0.0083 30.7 8.9 64 143-217 264-330 (450)
305 PRK09593 arb 6-phospho-beta-gl 22.6 2.7E+02 0.0059 32.3 7.7 51 204-254 117-168 (478)
306 PRK06382 threonine dehydratase 22.4 9.4E+02 0.02 27.0 11.7 101 607-721 162-282 (406)
307 TIGR00143 hypF [NiFe] hydrogen 22.3 39 0.00083 41.0 1.0 43 617-659 132-180 (711)
308 PLN02746 hydroxymethylglutaryl 22.1 4.4E+02 0.0096 29.6 9.0 109 154-282 123-238 (347)
309 PF13719 zinc_ribbon_5: zinc-r 22.1 37 0.0008 26.1 0.5 15 625-640 2-16 (37)
310 smart00734 ZnF_Rad18 Rad18-lik 22.1 68 0.0015 23.1 1.8 11 625-635 1-11 (26)
311 PRK09589 celA 6-phospho-beta-g 22.1 2.5E+02 0.0055 32.5 7.3 51 204-254 111-162 (476)
312 PRK09250 fructose-bisphosphate 22.0 3.1E+02 0.0067 31.1 7.7 95 117-217 148-284 (348)
313 PF02679 ComA: (2R)-phospho-3- 22.0 99 0.0022 33.1 3.8 111 145-289 14-128 (244)
314 cd00947 TBP_aldolase_IIB Tagat 21.9 9.9E+02 0.021 26.1 11.3 86 521-621 38-124 (276)
315 cd02932 OYE_YqiM_FMN Old yello 21.8 7E+02 0.015 27.2 10.3 70 242-325 240-317 (336)
316 PRK10605 N-ethylmaleimide redu 21.7 4.4E+02 0.0096 29.4 8.9 96 193-290 151-265 (362)
317 cd07945 DRE_TIM_CMS Leptospira 21.7 5.4E+02 0.012 27.7 9.3 71 206-280 79-157 (280)
318 PTZ00314 inosine-5'-monophosph 21.6 3.7E+02 0.0081 31.4 8.6 63 144-217 282-347 (495)
319 COG1779 C4-type Zn-finger prot 21.5 37 0.00081 35.4 0.6 60 622-689 11-71 (201)
320 cd00950 DHDPS Dihydrodipicolin 21.5 7.8E+02 0.017 25.8 10.3 106 145-282 10-124 (284)
321 PRK05265 pyridoxine 5'-phospha 21.3 2E+02 0.0044 30.9 5.9 76 131-225 115-191 (239)
322 PF05605 zf-Di19: Drought indu 21.2 87 0.0019 25.4 2.6 22 626-648 3-24 (54)
323 cd03174 DRE_TIM_metallolyase D 21.0 4.4E+02 0.0095 26.8 8.2 74 205-281 78-157 (265)
324 TIGR02666 moaA molybdenum cofa 21.0 2.1E+02 0.0045 30.8 6.0 54 199-271 72-127 (334)
325 TIGR01319 glmL_fam conserved h 20.9 2.6E+02 0.0057 32.7 7.1 79 495-587 94-172 (463)
326 PRK05835 fructose-bisphosphate 20.7 9.2E+02 0.02 26.9 10.9 90 521-623 42-131 (307)
327 cd00330 phosphagen_kinases Pho 20.7 1.3E+02 0.0029 31.9 4.4 122 96-250 101-228 (236)
328 PRK04180 pyridoxal biosynthesi 20.7 5.1E+02 0.011 28.8 8.8 108 112-228 151-284 (293)
329 cd00957 Transaldolase_TalAB Tr 20.7 1.6E+02 0.0036 32.5 5.2 57 224-282 89-147 (313)
330 PRK14350 ligA NAD-dependent DN 20.5 51 0.0011 39.8 1.5 43 588-635 366-408 (669)
331 cd02947 TRX_family TRX family; 20.5 1.6E+02 0.0035 23.6 4.0 71 628-711 22-92 (93)
332 cd05402 NT_PAP_TUTase Nucleoti 20.4 4.3E+02 0.0092 23.7 7.1 67 639-719 3-71 (114)
333 PF10825 DUF2752: Protein of u 20.3 36 0.00078 28.0 0.1 9 626-634 10-18 (52)
334 cd00439 Transaldolase Transald 20.3 1.5E+02 0.0033 31.5 4.8 58 219-282 81-138 (252)
335 COG4049 Uncharacterized protei 20.3 50 0.0011 28.6 1.0 32 622-653 14-45 (65)
336 PF12683 DUF3798: Protein of u 20.1 1.2E+02 0.0027 33.2 4.0 92 114-217 44-166 (275)
337 cd06419 GH25_muramidase_2 Unch 20.1 2.4E+02 0.0051 28.7 5.9 83 200-295 45-154 (190)
338 cd06543 GH18_PF-ChiA-like PF-C 20.1 2.4E+02 0.0053 30.6 6.3 73 202-282 55-136 (294)
339 PRK01261 aroD 3-dehydroquinate 20.0 1.4E+02 0.003 31.5 4.4 37 89-125 7-43 (229)
No 1
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=100.00 E-value=1.3e-204 Score=1685.90 Aligned_cols=716 Identities=88% Similarity=1.362 Sum_probs=681.4
Q ss_pred CCCCCCCcccCCcccccCCCcccccccceeecceeeeccccceeeeeccCCCCcccccccccCCCCCCCccCcccccccc
Q 004907 1 MATGTLPASFPGLKSRDSGLGFAKSVDFVRVCDFRKFKSGRRRFTVIRNSSNSSSDIAELQPASEGSPLLVPRQKYCESI 80 (724)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~ 80 (724)
||+|.+|+++.+++.+..+++|.++++|.+. +++++.++.++. ++.+++.++++++++++++.|.++||+|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Yc~s~ 72 (733)
T PLN02925 1 MATGVLPAPLSGLKTSDSKLGFGKSMDFVRI-------CDVRSVSVIRNS-NTGPDLVELQPASEGSPLLVPRQKYCESI 72 (733)
T ss_pred CCcCcCCccccceeccccccccccccchhhh-------hhhhhhhhhhcc-cccchhhcccccCCCCcccchhhhcCcch
Confidence 8999999999999999999999999999665 333455555554 66788999999999999999999999999
Q ss_pred cccCCCCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCC
Q 004907 81 HKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNY 143 (724)
Q Consensus 81 ~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~ 143 (724)
|+|.||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++ +|+.|+++|+++++
T Consensus 73 ~~~~Rr~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D~eatv~Qi~~l~~aGceiVRvtv~~~~~A~al~~I~~~L~~~g~ 152 (733)
T PLN02925 73 HKTVRRKTRTVMVGNVALGSEHPIRIQTMTTTDTKDVEATVDQVMRIADKGADIVRITVQGKKEADACFEIKNTLVQKGY 152 (733)
T ss_pred hccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999 89999999999999
Q ss_pred CcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 144 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
++||||||||||++|++|++++|||||||||||+++|+|+.++|||+||++||++|+++|.+||++||++|+||||||||
T Consensus 153 ~iPLVADIHF~~~~Al~a~~~vdkiRINPGN~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN~ 232 (733)
T PLN02925 153 NIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTNH 232 (733)
T ss_pred CCCEEEecCCCHHHHHHHHHhcCCeEECCcccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCC
Q 004907 224 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 303 (724)
Q Consensus 224 GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~ 303 (724)
|||++|++++||+||+||||||+||+++||++||+|||||||||||++||+|||+|+++|+++|++|||||||||||+++
T Consensus 233 GSLs~ri~~~yGdtp~gmVeSAle~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTEAG~~e 312 (733)
T PLN02925 233 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTEAGEGE 312 (733)
T ss_pred cCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEecCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccccC
Q 004907 304 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEG 383 (724)
Q Consensus 304 ~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~~~~~~~~~~~~~~f~~~~~~~~~~~rr~~~~~~~~~g 383 (724)
+|+||||+|||+||.||||||||||||+||++||+||++|+++......++..++.|++..+||++|.||.+..+...+|
T Consensus 313 dg~IKSAigiGaLL~DGIGDTIRVSlt~dP~~Evpva~~Lv~~~~~~~~~~~~i~~~~~~~~d~~~~~RR~~~~~~~igg 392 (733)
T PLN02925 313 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEEEIDPCRRLANLGMKAAALQQGVAPFEEKHRDYFDFQRRTGQLPVQKEG 392 (733)
T ss_pred CceehhHHHHHHHHhcCCccEEEEECCCCchhhchHHHHHHHHHHhcccccccCCccccCCCCCCCcccccCCcccccCc
Confidence 99999999999999999999999999999999999999999987774334445788999999999999999999989999
Q ss_pred CccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhccccc
Q 004907 384 EEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 463 (724)
Q Consensus 384 ~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 463 (724)
+.+|++.++|++++|++.+++++|+.++++|+.+++++.+|+++++.+++|+||++++|+..+.+.+++|++++|+++|+
T Consensus 393 ~~~p~~vi~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~l~~~~~~~~~~~~~~~~~~~d~~~~~ 472 (733)
T PLN02925 393 EEVDYRNVLHRDGSVLMSVSLDQLKAPELLYRSLAAKLVVGMPFKDLATVDSILLRELPPVDDEEARLALKRLIDVSMGV 472 (733)
T ss_pred ccCCeeEEEeccccccccccHhhhccchhhhhccchhhccCcccccccCcceEeecccCCccchhhhhhhheeeeccccc
Confidence 99999999999999999999999999999999999999999999999999999999988878888899999999999999
Q ss_pred cccccccccCCCccchhhhhhhhhhccccccCCcccceeEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHH
Q 004907 464 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAAR 543 (724)
Q Consensus 464 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R 543 (724)
+.|.++....|+++++++++.+++....+...++..+|+++..+++++|.+..++..+.+++++..|+..++.++|+++|
T Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~e~l~~~~~~~~~~~il~s~~~~~~~~~v~~~R 552 (733)
T PLN02925 473 IAPLSEQLTKPLPNAMALVNLKELSSGAHKLLPEGTRLAVTLRGDEPYEELEILKDVDATMLLHDVPFTEDKVSRVHAAR 552 (733)
T ss_pred ccccchhcccccccceeeeehhhhcccccccccccceeEEeccCCccHHHHHHhhcCCceEEEEeccccccccchHHHHH
Confidence 98866666778899999999988876666677778899999999999999999999999999999444458899999999
Q ss_pred HHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhccCCcc
Q 004907 544 RLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKT 623 (724)
Q Consensus 544 ~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~kt 623 (724)
+||+.|+++|+++|||||..|++..+.++.+|+||+++|+||+|||||||||+.++.+..+.+.++|+|||++|+|++||
T Consensus 553 rl~~~l~~~g~~~Pvi~~~~~~~~~~~~~~~i~s~~~~g~Ll~dGiGD~i~i~~~~~~~~~~~~~~~~ILQ~~~~R~~kt 632 (733)
T PLN02925 553 RLFEYLSSNSLNFPVIHHIQFPAGIHRDDLVIQAGSQAGALLVDGLGDGVLLEAPDQDFDFLRNTSFGLLQGCRMRNTKT 632 (733)
T ss_pred HHHHHHHhcCCCCCEEEEEecCCCCchhHHHHHHHHHHHHHHhccCcceEEEeCCCCCHHHHHHHHHHHHHHhCccccCC
Confidence 99999999999999999999999768899999999999999999999999999998889999999999999999999999
Q ss_pred eeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHH
Q 004907 624 EYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQA 703 (724)
Q Consensus 624 e~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipeeea 703 (724)
|||||||||||+||||+++++|+++|+||||+||||||||||||||||||||||||++||||+||+|||||+||||+|+|
T Consensus 633 e~isCPgCGRT~~dlq~~~~~I~~~~~hl~GvkiavMGCIVNGPGEmadAd~GyVG~gpgKI~LYvgKecV~~nIpeeeA 712 (733)
T PLN02925 633 EYVSCPSCGRTLFDLQEVSAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKEVVKRGIAMEEA 712 (733)
T ss_pred eEEECCCCCCccccHHHHHHHHHHHhhcCCCceEEEEeeeecCCccccccccceeccCCCeeEEEecceehhcCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccCCCCCCC
Q 004907 704 TDALIQLIKDHGRWAEPPAEE 724 (724)
Q Consensus 704 vd~Li~lIk~~g~W~dp~~~~ 724 (724)
||+||+|||+||+|+||+++|
T Consensus 713 vd~LIeLIKe~G~Wvdp~~~~ 733 (733)
T PLN02925 713 TDALIQLIKDHGRWVDPEVEE 733 (733)
T ss_pred HHHHHHHHHHcCcccCCCCCC
Confidence 999999999999999998765
No 2
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=100.00 E-value=1.4e-186 Score=1517.03 Aligned_cols=585 Identities=44% Similarity=0.741 Sum_probs=509.9
Q ss_pred ccccccccCCCCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHh
Q 004907 76 YCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSL 138 (724)
Q Consensus 76 Yc~s~~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L 138 (724)
-|+++++|.||+||+|+||+|+|||+|||+|||||||+|+|++|||+||++|++ +|+.|+++|
T Consensus 3 ~c~~~~~y~Rr~Tr~V~VG~v~iGG~~PI~VQSMt~t~T~D~~atv~Qi~~L~~aGceiVRvtvp~~~~A~al~~I~~~L 82 (606)
T PRK00694 3 ATPCIQNAFRRKTHPVRIGNLFVGSEHSIKIQSMTTTATTDVDGTVRQICALQEWGCDIVRVTVQGLKEAQACEHIKERL 82 (606)
T ss_pred ccccccccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999 899999999
Q ss_pred hhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 139 VQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 139 ~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
+++|+++||||||||||++|++|++++|||||||||||+++|+|+.++|||+||++||++|+++|.+||++||++|+|||
T Consensus 83 ~~~g~~iPLVADIHF~~~~A~~a~~~vdkiRINPGNi~~~~k~F~~~~YtDeeY~~el~~I~e~~~~vV~~ake~~~~IR 162 (606)
T PRK00694 83 IQQGISIPLVADIHFFPQAAMHVADFVDKVRINPGNYVDKRNMFTGKIYTDEQYAHSLLRLEEKFSPLVEKCKRLGKAMR 162 (606)
T ss_pred hccCCCCCEEeecCCChHHHHHHHHhcCceEECCcccCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccc
Q 004907 219 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE 298 (724)
Q Consensus 219 IGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTE 298 (724)
||||||||+++++++||+||+|||||||||+++||++||+|||||||||||++||+|||+|+++|+++||+|||||||||
T Consensus 163 IGvN~GSL~~~i~~~yG~tpegmVeSAle~~~i~e~~~f~diviS~KsSnv~~mi~AyrlLa~~~d~eg~~YPLHLGVTE 242 (606)
T PRK00694 163 IGVNHGSLSERVMQRYGDTIEGMVYSALEYIEVCEKLDYRDVVFSMKSSNPKVMVAAYRQLAKDLDARGWLYPLHLGVTE 242 (606)
T ss_pred EecCCcCchHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHHhhccCCCcCceecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCC
Q 004907 299 AGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLP 378 (724)
Q Consensus 299 AG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~~~~~~~~~~~~~~f~~~~~~~~~~~rr~~~~~ 378 (724)
||+|++|+||||+|||+||.||||||||||||+||++||+||++|+++......++.. +++++|.||.+..+
T Consensus 243 AG~g~~G~IKSavGIG~LL~dGIGDTIRVSLT~dP~~Ev~va~~ll~~~~~~~~~~~~--------~~pf~~~rR~~~~~ 314 (606)
T PRK00694 243 AGSGTDGIIKSAVGIGTLLSEGLGDTIRCSLTGCPTNEIPVCISLLKHTTEYLELPEK--------DNPFALHHSEQFVS 314 (606)
T ss_pred CcCCCCceeHHHHHHHHHHHhCCCCeEEEECCCChHHHHHHHHHHHHHHHHhhccCCC--------CCCCCccccccccc
Confidence 9999999999999999999999999999999999999999999999976665544433 34555555554411
Q ss_pred c-cccCCccccccccccCCceeeeccccccc-chhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHH
Q 004907 379 I-QKEGEEVDYRGVLHRDGSVLMSVSLDQLK-APELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRL 456 (724)
Q Consensus 379 ~-~~~g~~~~~~~~l~~~~~v~~~~~~~~l~-~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~~ 456 (724)
. .+.-+..++.+++ +++...++..++. .++.+|+.++.+...|+ +|..++|.+.+...|...+
T Consensus 315 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~d~~~~~~~~~~~~~~~~~---------- 379 (606)
T PRK00694 315 ATRKTLKTTPWGNVY---GVFIKLTDVHLLTAEPEELLECLGIDPTTGK--KDFTTPEGVVVPKAMRSSP---------- 379 (606)
T ss_pred cceeecccCcccccc---chhhccccchhcccchhhhhhhcccccccCC--cccCCccceEEeccccchh----------
Confidence 1 1111133444444 5555555665554 67888888888877776 5688888877654332221
Q ss_pred hhccccccccccccccCCCccchhhhhhhhhhccccccCCcccceeEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCcc
Q 004907 457 VDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKI 536 (724)
Q Consensus 457 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~ 536 (724)
+| .+.++.+++++..++.. ..+.+++....++....++ ++ .+.+.
T Consensus 380 ----~~----------~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~l~~~~-v~----~~~~~ 424 (606)
T PRK00694 380 ----IV----------SELEKHLLVFHHHDVPC----------------LYEMNEEIWLSEEVLSAPF-VH----FHATD 424 (606)
T ss_pred ----hc----------cccccceeeechhhccc----------------cccccHhhhhhhhhhccee-Ee----cccCc
Confidence 11 11224445555443310 1122222222222223333 33 36668
Q ss_pred chhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHh
Q 004907 537 GRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGC 616 (724)
Q Consensus 537 ~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~~i~~v~~~ILQa~ 616 (724)
++++++|+||+.|+++ ++|||||..|++. +.++.+|+||+++|+||+|||||+||++.++.+.++++.++|+|||++
T Consensus 425 ~~v~~~R~l~~~l~~~--~~Pvi~~~~~~~~-~~~~~~i~aa~~~G~Ll~DGlGDgi~l~~~~~~~~~~~~laf~ILQaa 501 (606)
T PRK00694 425 PFIHTARRFFSKRQHS--TQPVKLVFSLDPD-SKNEAAIDIATEFGALLLDGLGECVLLDLPNIKLSDVRTIAFGTLQSA 501 (606)
T ss_pred chHHHHHHHHHHHHhc--CCCEEEEEecCCC-chhHHHHHHHHHhhHHHhccCcceEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 8999999999999887 7899999999985 788999999999999999999999999999888888999999999999
Q ss_pred hccCCcceeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeee
Q 004907 617 RMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKR 696 (724)
Q Consensus 617 r~R~~kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~ 696 (724)
|+|++|||||||||||||+||||+|+++|+++|+||||+||||||||||||||||||||||||++||||+||+|||||++
T Consensus 502 R~R~sKte~isCP~CgRtlfdlq~t~~~i~~~t~Hl~g~kIaiMGCiVNGpGEmadAd~GyVG~gpgkI~LY~gKecV~~ 581 (606)
T PRK00694 502 GVRLVKTEYISCPGCGRTLFDLLEVTQRIRERTQHLPGLKIAVMGCIVNGPGEMADADFGFVGSKTGMIDLYVKHTCVKA 581 (606)
T ss_pred ccccccceEEECCCCCceeehHHHHHHHHHHHhccCCCceEEEEEeEecCCccccccccceecCCCCeEEEEecceehhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhccccCCCC
Q 004907 697 GIAMEQATDALIQLIKDHGRWAEPP 721 (724)
Q Consensus 697 ~Ipeeeavd~Li~lIk~~g~W~dp~ 721 (724)
|||+|+|||+|++|||+||+|+||+
T Consensus 582 nIPee~Avd~LI~LIke~G~W~dp~ 606 (606)
T PRK00694 582 HIPMENAEEELVQLLKEHGVWKDPE 606 (606)
T ss_pred CCCHHHHHHHHHHHHHHcCCcCCCC
Confidence 9999999999999999999999994
No 3
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=100.00 E-value=1.9e-184 Score=1509.92 Aligned_cols=591 Identities=43% Similarity=0.691 Sum_probs=531.1
Q ss_pred cccccCCCCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHhhhc
Q 004907 79 SIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSLVQK 141 (724)
Q Consensus 79 s~~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~ 141 (724)
|+|+|+||+||+|+||+|+|||+|||+|||||||+|+|+++||+||++|++ +|+.|+++|+++
T Consensus 2 ~~~~y~Rr~Tr~V~vG~v~iGg~~PI~vQSMt~t~T~D~~atv~Qi~~l~~aGceiVRvtv~~~~~a~~l~~I~~~l~~~ 81 (611)
T PRK02048 2 DLFNYSRRKTSVVNIGATPLGGPNPIRIQSMTNTSTMDTEACVAQAKRIIDAGGEYVRLTTQGVREAENLMNINIGLRSQ 81 (611)
T ss_pred CccccccccceEEEEcCEeECCCCceEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHHHHhhc
Confidence 589999999999999999999999999999999999999999999999999 899999999999
Q ss_pred CCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 142 NYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 142 ~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
|+++||||||||||++|++|++++|||||||||||+++|+|+.++||||||++||++|+|+|.+||++||++|+||||||
T Consensus 82 G~~iPLVADIHF~~~~A~~a~~~v~kiRINPGN~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGv 161 (611)
T PRK02048 82 GYMVPLVADVHFNPKVADVAAQYAEKVRINPGNYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGV 161 (611)
T ss_pred CCCCCEEEecCCCcHHHHHHHHhhCCEEECCCcCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEec
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCC
Q 004907 222 NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE 301 (724)
Q Consensus 222 N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~ 301 (724)
|||||+++++++||+||+|||||||||+++||++||+||||||||||++.||+|||+|+++|+++||+|||||||||||+
T Consensus 162 N~GSL~~~i~~~yg~tpe~mVeSAle~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~~g~dyPLHLGvTEAG~ 241 (611)
T PRK02048 162 NHGSLSDRIMSRYGDTPEGMVESCMEFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEAEGMHYPLHLGVTEAGD 241 (611)
T ss_pred CCcCchHHHHHHhCCChHHHHHHHHHHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHhcCCCCceEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccc
Q 004907 302 GEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQK 381 (724)
Q Consensus 302 ~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~~~~~~~~~~~~~~f~~~~~~~~~~~rr~~~~~~~~ 381 (724)
+++|+||||+|||+||.||||||||||||++|++|+++|+.|||....+..+. .++..+...+||++|.||.+...
T Consensus 242 ~edg~IKSAigiGaLL~DGIGDTIRVSlt~dP~~Ev~vAf~ILQa~r~R~~~~-~~~~~~~~~f~~~~~~rR~~~~~--- 317 (611)
T PRK02048 242 GEDGRIKSAVGIGALLADGIGDTIRVSLSEEPEAEIPVARKLVDYIRSRENHP-YIPGMEAPGFDYLSPSRRKTRAV--- 317 (611)
T ss_pred CcCceehhHHHHHHHHhcCCccEEEEeCCCChHHHHHHHHHHHHHHHhhccCC-CCCcccCCCCCCCCcccccccce---
Confidence 99999999999999999999999999999999999999999999654443322 12223333369999999997622
Q ss_pred cCCccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhc-CCCCCCchhHHHHHHHHhhcc
Q 004907 382 EGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLR-ELPSVDDHDARLALKRLVDIS 460 (724)
Q Consensus 382 ~g~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~-~~~~~~~~~~~~~l~~~~~~~ 460 (724)
.+++ |+++..+..+.++.. ...++..++|+||++ ++|...+. ..++++|++
T Consensus 318 -------~~ig---g~~~~~V~~~~~~~~--------------~~~~~~~~~D~i~~~~~~~~~~~~----~~~~~~~~~ 369 (611)
T PRK02048 318 -------RNIG---GDHLPVVIADRMDGD--------------FEFDPQFLPDYIYAGRELPEQREP----GVQYILDAD 369 (611)
T ss_pred -------eccC---CcccceEEeeccccc--------------cccccCCCCceEeecccccccccc----cceEeeccc
Confidence 2222 222333334333321 112677899999998 66644332 335777777
Q ss_pred ccccccccccccCCCccchhhhhhhhhhccccccCCcccceeEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhH
Q 004907 461 MGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQ 540 (724)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~ 540 (724)
+| .+.++.+|+++.+++... + ...+..+|+++..++++++.++.++..+.+++++. +++.++++
T Consensus 370 ~~----------~~~~~~~~~~~~~~~~~~-~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~i~~----~~~~~~~~ 433 (611)
T PRK02048 370 VW----------KEEPNTWPAFNYAQLELM-E-TCAAELKFLFLPYMALTDEVLACLKAHPEVVVILQ----SNHPNRVG 433 (611)
T ss_pred cc----------cccccceeeeehhhcccc-c-ccccccceEEeccCcccHHHHHHhhcCCceEEEEe----cCCcchHH
Confidence 66 224566777877665422 1 22234599999999999999999999999999988 78899999
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCC-CChhhhhHHHHHHHHHhhcc
Q 004907 541 AARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPG-QDFDFLRDTSFNLLQGCRMR 619 (724)
Q Consensus 541 ~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~-~~~~~i~~v~~~ILQa~r~R 619 (724)
++|+||+.|+++|+++|||||..|++ .+.++.+|+||+++|+||+|||||+||++.++ .+.++++.++|+|||++|+|
T Consensus 434 ~~R~l~~~l~~~g~~~Pvi~~~~~~~-~~~~~~~i~aa~~~G~Ll~DGlgDgi~l~~~~~~~~~~~~~laf~ILQa~r~R 512 (611)
T PRK02048 434 EHRALAHQLMVAGLENPVIFFQHYAE-TTAEDLQLKAAADMGALIFDGLCDGIFLFNQGKLSHVVVDATAFGILQAGRLR 512 (611)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEecCC-CchHHHHHHHHHhhhHHHhCcccceEEEecCCCccHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999998 67899999999999999999999999999886 66788889999999999999
Q ss_pred CCcceeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCC
Q 004907 620 NTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIA 699 (724)
Q Consensus 620 ~~kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ip 699 (724)
++||||||||||||||||||+|+++||++|+||||+||||||||||||||||||||||||++||||+||+|||||+||||
T Consensus 513 ~sKTEyISCPsCGRTLfDLq~tta~Ik~~t~HLkGlkI~IMGCIVNGPGEMADADfGYVG~gpgkI~LY~gke~V~~nIp 592 (611)
T PRK02048 513 TSKTEYISCPGCGRTLYDLQSTIARIKEATSHLKGLKIGIMGCIVNGPGEMADADYGYVGAGRGKISLYKQKECVEKNIP 592 (611)
T ss_pred cccceEEECCCCCcchhhHHHHHHHHHHHhCCCCCceEEEEEeEecCCchhhhcccceecCCCCeEEEEeccEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhccccC
Q 004907 700 MEQATDALIQLIKDHGRWA 718 (724)
Q Consensus 700 eeeavd~Li~lIk~~g~W~ 718 (724)
+|+|||+|++|||+||+|+
T Consensus 593 ~e~Avd~Li~LIk~~g~W~ 611 (611)
T PRK02048 593 EEEAVERLIELIKANGDWE 611 (611)
T ss_pred HHHHHHHHHHHHHHcCCcC
Confidence 9999999999999999996
No 4
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=100.00 E-value=3.2e-135 Score=1067.83 Aligned_cols=340 Identities=53% Similarity=0.828 Sum_probs=293.5
Q ss_pred ceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCcceeec
Q 004907 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVAD 150 (724)
Q Consensus 88 Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~iPLVAD 150 (724)
||+|+||+|+|||+|||+|||||||+|.|+++|++||++|++ ++++|+++|+++++++|||||
T Consensus 1 Tr~V~VG~v~IGG~~PI~VQSMt~t~t~Dv~atv~QI~~L~~aGceivRvavp~~~~a~al~~I~~~l~~~g~~iPlVAD 80 (359)
T PF04551_consen 1 TRQVRVGNVPIGGGAPISVQSMTNTDTRDVEATVAQIKRLEEAGCEIVRVAVPDMEAAEALKEIKKRLRALGSPIPLVAD 80 (359)
T ss_dssp ---EEETTEEESTTS--EEEEE--S-TT-HHHHHHHHHHHHHCT-SEEEEEE-SHHHHHHHHHHHHHHHCTT-SS-EEEE
T ss_pred CcEEEEcCEeecCCCCEEEEecCCCCcccHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHhhccCCCCCCeeee
Confidence 789999999999999999999999999999999999999999 899999999999999999999
Q ss_pred CCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHH
Q 004907 151 IHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI 230 (724)
Q Consensus 151 IHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~i 230 (724)
|||||++||+|++++||||||||||++ +|++++..++++|++||++||++|+|||||||||||++++
T Consensus 81 IHFd~~lAl~a~~~v~kiRINPGNi~~-------------~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~~~~ 147 (359)
T PF04551_consen 81 IHFDYRLALEAIEAVDKIRINPGNIVD-------------EFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLEKDI 147 (359)
T ss_dssp ESTTCHHHHHHHHC-SEEEE-TTTSS-----------------SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS-HHH
T ss_pred cCCCHHHHHHHHHHhCeEEECCCcccc-------------cccccccchHHHHHHHHHHHHHCCCCEEEecccccCcHHH
Confidence 999999999999999999999999985 6889999999999999999999999999999999999999
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhH
Q 004907 231 MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSA 310 (724)
Q Consensus 231 l~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~~G~IKSa 310 (724)
++|||+||+||||||++|+++||++||+||+||+||||++.|++|||+|+++ +||||||||||||++.+|+||||
T Consensus 148 ~~ky~~t~~amvesA~~~~~~le~~~f~~iviSlKsSdv~~~i~ayr~la~~-----~dyPLHLGvTEAG~~~~g~IkSs 222 (359)
T PF04551_consen 148 LEKYGPTPEAMVESALEHVRILEELGFDDIVISLKSSDVPETIEAYRLLAER-----MDYPLHLGVTEAGTGEDGTIKSS 222 (359)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHCT-GGEEEEEEBSSHHHHHHHHHHHHHH-------S-EEEEBSSEESCHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHHHHHCCCCcEEEEEEeCChHHHHHHHHHHHHh-----cCCCeEEeecCCCCcccchhHHH
Confidence 9999999999999999999999999999999999999999999999999999 79999999999999999999999
Q ss_pred HHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccccCCcccccc
Q 004907 311 IGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDYRG 390 (724)
Q Consensus 311 iGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~~~~~~~~~~~~~~f~~~~~~~~~~~rr~~~~~~~~~g~~~~~~~ 390 (724)
+|||+||.||||||||||||+||++||++|++
T Consensus 223 igiG~LL~~GIGDTIRVSLt~~p~~EV~va~~------------------------------------------------ 254 (359)
T PF04551_consen 223 IGIGALLLDGIGDTIRVSLTGDPVEEVKVAFE------------------------------------------------ 254 (359)
T ss_dssp HHHHHHHHTT--SEEEE-ECSSCCCHHHHHHH------------------------------------------------
T ss_pred HHHHHHHHcCCCCEEEEECCCCchHHHHHHHH------------------------------------------------
Confidence 99999999999999999999999999877633
Q ss_pred ccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhcccccccccccc
Q 004907 391 VLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLSEQ 470 (724)
Q Consensus 391 ~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 470 (724)
T Consensus 255 -------------------------------------------------------------------------------- 254 (359)
T PF04551_consen 255 -------------------------------------------------------------------------------- 254 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCccchhhhhhhhhhccccccCCcccceeEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHHHHHHHHH
Q 004907 471 LTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLS 550 (724)
Q Consensus 471 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~ 550 (724)
T Consensus 255 -------------------------------------------------------------------------------- 254 (359)
T PF04551_consen 255 -------------------------------------------------------------------------------- 254 (359)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhccCCcceeecCCC
Q 004907 551 ENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPS 630 (724)
Q Consensus 551 ~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~kte~ISCPs 630 (724)
|||++++|.++++||||||
T Consensus 255 -------------------------------------------------------------IL~al~lR~~g~~~ISCPt 273 (359)
T PF04551_consen 255 -------------------------------------------------------------ILQALGLRKRGPEIISCPT 273 (359)
T ss_dssp -------------------------------------------------------------HHHHTTSS-SS-EEEE---
T ss_pred -------------------------------------------------------------HHHHhCcCcCCceeeeCCC
Confidence 4777899999999999999
Q ss_pred CccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHHHHHHHH
Q 004907 631 CGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQ 709 (724)
Q Consensus 631 CGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipeeeavd~Li~ 709 (724)
||||+||||+++++|+++|.|+| |+|||||||||||||||+||||||+||++|++.||++|++|++.+|+++++|+|++
T Consensus 274 CGRt~~Dl~~~~~~ie~~l~~l~~~lkIAVMGCiVNGPGEa~~AD~GiaGgg~g~~~lf~~g~~v~k~~~ee~~vd~L~~ 353 (359)
T PF04551_consen 274 CGRTEFDLQELVAEIEERLKHLKKGLKIAVMGCIVNGPGEAKDADIGIAGGGKGKGILFKKGEVVKKVIPEEEIVDELIE 353 (359)
T ss_dssp -TT--SHHHHHHHHHHHHCCCHHCG-EEEEESSTCCCHHHCTTSSEEEE-E-TTCEEEECTTEEEEEE-CSTCHHHHHHH
T ss_pred CCCccchHHHHHHHHHHHHhcCCCCceEEEEeeeecCCchhhhCceeeecCCCCeEEEEECCEEEEecCCHHHHHHHHHH
Confidence 99999999999999999999998 99999999999999999999999998889999999999999987799999999999
Q ss_pred HHHhc
Q 004907 710 LIKDH 714 (724)
Q Consensus 710 lIk~~ 714 (724)
+|+++
T Consensus 354 ~I~~~ 358 (359)
T PF04551_consen 354 LIEEH 358 (359)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99986
No 5
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=100.00 E-value=1.9e-130 Score=1024.56 Aligned_cols=329 Identities=45% Similarity=0.722 Sum_probs=312.4
Q ss_pred CCCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceeec
Q 004907 85 RRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVAD 150 (724)
Q Consensus 85 Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVAD 150 (724)
||+||+|+||+|+|||+|||+|||||||+|+|+++|++||++|++ +.+.+++ +++++++|||||
T Consensus 1 Rr~tr~V~VG~v~IGG~~PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRvavp~~~~A~al~~--I~~~~~iPlVAD 78 (346)
T TIGR00612 1 RRKTRSVRVGAVPVGGDAPIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVTVPDRESAAAFEA--IKEGTNVPLVAD 78 (346)
T ss_pred CCcceEEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHhHHH--HHhCCCCCEEEe
Confidence 899999999999999999999999999999999999999999999 3333433 344899999999
Q ss_pred CCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchH
Q 004907 151 IHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 229 (724)
Q Consensus 151 IHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~ 229 (724)
|||||++|++|++. +|||||||||||+++ +|++||++||++|+|||||||||||+++
T Consensus 79 IHFd~~lAl~a~~~g~dkiRINPGNig~~e----------------------~v~~vv~~ak~~~ipIRIGVN~GSL~~~ 136 (346)
T TIGR00612 79 IHFDYRLAALAMAKGVAKVRINPGNIGFRE----------------------RVRDVVEKARDHGKAMRIGVNHGSLERR 136 (346)
T ss_pred eCCCcHHHHHHHHhccCeEEECCCCCCCHH----------------------HHHHHHHHHHHCCCCEEEecCCCCCcHH
Confidence 99999999999998 999999999999843 6999999999999999999999999999
Q ss_pred HHhhcC-CCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchh
Q 004907 230 IMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMK 308 (724)
Q Consensus 230 il~~yg-~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~~G~IK 308 (724)
++++|| +||+||||||++|+++||++||+||+||||||||++|++|||+|+++ +||||||||||||++.+|+||
T Consensus 137 ~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ayr~la~~-----~dyPLHlGVTEAG~~~~G~IK 211 (346)
T TIGR00612 137 LLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKASDVAETVAAYRLLAER-----SDYPLHLGVTEAGMGVKGIVK 211 (346)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhh-----CCCCceeccccCCCCCCchhH
Confidence 999999 79999999999999999999999999999999999999999999999 899999999999999999999
Q ss_pred hHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccccCCcccc
Q 004907 309 SAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEGEEVDY 388 (724)
Q Consensus 309 SaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~~~~~~~~~~~~~~f~~~~~~~~~~~rr~~~~~~~~~g~~~~~ 388 (724)
||+|||+||.+|||||||||||+||++||+|||+|
T Consensus 212 Saigig~LL~~GIGDTIRVSLT~dP~~EV~va~~I--------------------------------------------- 246 (346)
T TIGR00612 212 SSAGIGILLARGIGDTIRVSLTDDPTHEVPVAFEI--------------------------------------------- 246 (346)
T ss_pred HHHHHHHHHhhCCCCeEEEECCCCcHHHHHHHHHH---------------------------------------------
Confidence 99999999999999999999999999999998655
Q ss_pred ccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhcccccccccc
Q 004907 389 RGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGVITPLS 468 (724)
Q Consensus 389 ~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 468 (724)
T Consensus 247 -------------------------------------------------------------------------------- 246 (346)
T TIGR00612 247 -------------------------------------------------------------------------------- 246 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCCCccchhhhhhhhhhccccccCCcccceeEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHHHHHHH
Q 004907 469 EQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEY 548 (724)
Q Consensus 469 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R~l~~~ 548 (724)
T Consensus 247 -------------------------------------------------------------------------------- 246 (346)
T TIGR00612 247 -------------------------------------------------------------------------------- 246 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhccCCcceeecC
Q 004907 549 LSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSC 628 (724)
Q Consensus 549 l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~kte~ISC 628 (724)
||++++|.+++++|||
T Consensus 247 ----------------------------------------------------------------L~slglr~~g~~iiSC 262 (346)
T TIGR00612 247 ----------------------------------------------------------------LQSLGLRARGVEIVAC 262 (346)
T ss_pred ----------------------------------------------------------------HHHcCCCcCCCeEEEC
Confidence 5557788899999999
Q ss_pred CCCccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHHHHHH
Q 004907 629 PSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDAL 707 (724)
Q Consensus 629 PsCGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipeeeavd~L 707 (724)
||||||.|||+++++++++++.|++ ++|||||||+||||||++||||||+||++|...||+++++++ ++|+++++|+|
T Consensus 263 PtCGR~~~dl~~~~~~ve~~l~~~~~~l~VAVMGCvVNGPGEak~ADiGIaggg~g~~~lF~~G~~~~-kv~~~~~~~~l 341 (346)
T TIGR00612 263 PSCGRTGFDVEKVVRRVQEALFHLKTPLKVAVMGCVVNGPGEAKHADIGISGGGTGSAILFKRGKPKA-KQPETDMADEL 341 (346)
T ss_pred CCCCCcCCCHHHHHHHHHHHHhcCCCCCEEEEECceecCCchhhccCeeeecCCCCceEEEECCEEeE-ecCHHHHHHHH
Confidence 9999999999999999999999998 899999999999999999999999998899999999999988 59999999999
Q ss_pred HHHHH
Q 004907 708 IQLIK 712 (724)
Q Consensus 708 i~lIk 712 (724)
+++|+
T Consensus 342 ~~~i~ 346 (346)
T TIGR00612 342 IRLIQ 346 (346)
T ss_pred HHhcC
Confidence 99874
No 6
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=100.00 E-value=4.4e-129 Score=1010.71 Aligned_cols=338 Identities=45% Similarity=0.740 Sum_probs=324.6
Q ss_pred cCCCCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCc
Q 004907 83 TVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNI 145 (724)
Q Consensus 83 ~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~i 145 (724)
.+||+||+|+||+|.|||+|||+|||||||+|.|+++|++||++|++ |+++|++ +.++
T Consensus 1 ~~Rrktr~v~VG~V~vGgdaPI~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~-----~~~v 75 (361)
T COG0821 1 IPRRKTRQVKVGNVPVGGDAPIVVQSMTNTDTADVEATVAQIKALERAGCDIVRVTVPDMEAAEALKEIKQ-----RLNV 75 (361)
T ss_pred CCcccceeEEECCEeecCCCceEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHH-----hCCC
Confidence 36999999999999999999999999999999999999999999999 6777777 5699
Q ss_pred ceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccC
Q 004907 146 PLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG 224 (724)
Q Consensus 146 PLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~G 224 (724)
||||||||||++|+.++++ +||+||||||||+++ +|++||++||++|+|||||||||
T Consensus 76 PLVaDiHf~~rla~~~~~~g~~k~RINPGNig~~~----------------------~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 76 PLVADIHFDYRLALEAAECGVDKVRINPGNIGFKD----------------------RVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred CEEEEeeccHHHHHHhhhcCcceEEECCcccCcHH----------------------HHHHHHHHHHHcCCCEEEecccC
Confidence 9999999999999999999 999999999999844 69999999999999999999999
Q ss_pred CCchHHHhhcC-CCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCC
Q 004907 225 SLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE 303 (724)
Q Consensus 225 SL~~~il~~yg-~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~ 303 (724)
||++++++||| +||||||||||+|+++||++||+||+||||+|||++||+|||+||++ +||||||||||||+++
T Consensus 134 SLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~Sdv~~~v~aYr~lA~~-----~dyPLHLGvTEAG~~~ 208 (361)
T COG0821 134 SLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKASDVQLMVAAYRLLAKR-----CDYPLHLGVTEAGMGF 208 (361)
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHh-----cCCCcccceecccCcc
Confidence 99999999996 89999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccccC
Q 004907 304 DGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQKEG 383 (724)
Q Consensus 304 ~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~~~~~~~~~~~~~~f~~~~~~~~~~~rr~~~~~~~~~g 383 (724)
+|+||||+|||.||++|||||||||||++|++||+||++|
T Consensus 209 ~G~VkSa~alg~LL~eGIGDTIRVSLt~~P~~EV~V~~eI---------------------------------------- 248 (361)
T COG0821 209 KGIVKSAAALGALLSEGIGDTIRVSLTADPVEEVKVAQEI---------------------------------------- 248 (361)
T ss_pred cceehHHHHHHHHHHhcCCceEEEecCCCchhhhHHHHHH----------------------------------------
Confidence 9999999999999999999999999999999999998555
Q ss_pred CccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhccccc
Q 004907 384 EEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISMGV 463 (724)
Q Consensus 384 ~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~~~~~~~~~ 463 (724)
T Consensus 249 -------------------------------------------------------------------------------- 248 (361)
T COG0821 249 -------------------------------------------------------------------------------- 248 (361)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCCccchhhhhhhhhhccccccCCcccceeEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHH
Q 004907 464 ITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAAR 543 (724)
Q Consensus 464 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R 543 (724)
T Consensus 249 -------------------------------------------------------------------------------- 248 (361)
T COG0821 249 -------------------------------------------------------------------------------- 248 (361)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhccCCcc
Q 004907 544 RLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKT 623 (724)
Q Consensus 544 ~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~kt 623 (724)
||++++|.+++
T Consensus 249 ---------------------------------------------------------------------LqslglR~~~v 259 (361)
T COG0821 249 ---------------------------------------------------------------------LQSLGLRSRGV 259 (361)
T ss_pred ---------------------------------------------------------------------HHHhCccccCc
Confidence 55577888999
Q ss_pred eeecCCCCccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhH
Q 004907 624 EYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQ 702 (724)
Q Consensus 624 e~ISCPsCGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipeee 702 (724)
+|||||+||||+||+.++++++++++.|++ |++||||||||||||||+|||+||+|++++...+|++++++++ +|+++
T Consensus 260 ~~iaCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiGia~~~~~~~~~f~~g~~~~~-~~~~~ 338 (361)
T COG0821 260 EVIACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIGIAGGGKGSGPVFVKGEIIKK-LPEED 338 (361)
T ss_pred eEEECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhccceeeecCCCCeeEEEECCeEEEe-cChhh
Confidence 999999999999999999999999999998 8999999999999999999999999998999999999999996 99999
Q ss_pred HHHHHHHHHHhccccCCCCC
Q 004907 703 ATDALIQLIKDHGRWAEPPA 722 (724)
Q Consensus 703 avd~Li~lIk~~g~W~dp~~ 722 (724)
++|+|+++|+++..|.++..
T Consensus 339 ~~eel~~~i~~~~~~~~~~~ 358 (361)
T COG0821 339 IVEELEALIEAYAEERDGEL 358 (361)
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 99999999999999998764
No 7
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=100.00 E-value=1.7e-124 Score=985.99 Aligned_cols=333 Identities=46% Similarity=0.746 Sum_probs=314.6
Q ss_pred ccccCCCCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcC
Q 004907 80 IHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKN 142 (724)
Q Consensus 80 ~~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~ 142 (724)
...++||+||+|+||+|+|||+|||+|||||||+|+|+++|++||++|++ +++.|++ +
T Consensus 4 ~~~~~Rr~tr~V~VG~v~iGg~~Pi~VQSMt~t~T~Dv~atv~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~-----~ 78 (360)
T PRK00366 4 STPIPRRKTRQVKVGNVPIGGDAPIVVQSMTNTDTADVEATVAQIKRLARAGCEIVRVAVPDMEAAAALPEIKK-----Q 78 (360)
T ss_pred ccccccccceEEEEcCEeECCCCcEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEccCCHHHHHhHHHHHH-----c
Confidence 34567999999999999999999999999999999999999999999999 5555555 7
Q ss_pred CCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 143 YNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 143 ~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+++||||||||||++|++|+++ +|||||||||||+. +++|++||++||++|+||||||
T Consensus 79 ~~iPlvADIHFd~~lAl~a~~~G~~~iRINPGNig~~---------------------~~~v~~vv~~ak~~~ipIRIGv 137 (360)
T PRK00366 79 LPVPLVADIHFDYRLALAAAEAGADALRINPGNIGKR---------------------DERVREVVEAAKDYGIPIRIGV 137 (360)
T ss_pred CCCCEEEecCCCHHHHHHHHHhCCCEEEECCCCCCch---------------------HHHHHHHHHHHHHCCCCEEEec
Confidence 8999999999999999999999 99999999999872 2469999999999999999999
Q ss_pred ccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccC
Q 004907 222 NHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAG 300 (724)
Q Consensus 222 N~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG 300 (724)
|||||+++++++||+ ||+||||||++|+++||++||+||+||||||||++|++|||+|+++ +||||||||||||
T Consensus 138 N~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~iviS~KsS~v~~~i~ayrlla~~-----~dyPLHlGvTEAG 212 (360)
T PRK00366 138 NAGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDIKISVKASDVQDLIAAYRLLAKR-----CDYPLHLGVTEAG 212 (360)
T ss_pred CCccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhc-----CCCCceecccCCC
Confidence 999999999999995 9999999999999999999999999999999999999999999999 8999999999999
Q ss_pred CCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCcc
Q 004907 301 EGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQ 380 (724)
Q Consensus 301 ~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~~~~~~~~~~~~~~f~~~~~~~~~~~rr~~~~~~~ 380 (724)
++.+|+||||+|||+||.+|||||||||||+||++||+|||+|
T Consensus 213 ~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~P~~EV~va~~I------------------------------------- 255 (360)
T PRK00366 213 MGFKGTVKSAAGLGALLQEGIGDTIRVSLTADPVEEVKVGQEI------------------------------------- 255 (360)
T ss_pred CCCCceehhHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHH-------------------------------------
Confidence 9999999999999999999999999999999999999998666
Q ss_pred ccCCccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhcc
Q 004907 381 KEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDIS 460 (724)
Q Consensus 381 ~~g~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~~~~~~ 460 (724)
T Consensus 256 -------------------------------------------------------------------------------- 255 (360)
T PRK00366 256 -------------------------------------------------------------------------------- 255 (360)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCCccchhhhhhhhhhccccccCCcccceeEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhH
Q 004907 461 MGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQ 540 (724)
Q Consensus 461 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~ 540 (724)
T Consensus 256 -------------------------------------------------------------------------------- 255 (360)
T PRK00366 256 -------------------------------------------------------------------------------- 255 (360)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhccC
Q 004907 541 AARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRN 620 (724)
Q Consensus 541 ~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~ 620 (724)
||++++|.
T Consensus 256 ------------------------------------------------------------------------L~slglr~ 263 (360)
T PRK00366 256 ------------------------------------------------------------------------LQSLGLRS 263 (360)
T ss_pred ------------------------------------------------------------------------HHHcCCcc
Confidence 45567888
Q ss_pred CcceeecCCCCccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCC
Q 004907 621 TKTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIA 699 (724)
Q Consensus 621 ~kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ip 699 (724)
++++++|||+|||+.+|++.+++++++++.+++ |+|||||||+||||||+++||+|++|+ +++..+|+++++|+ ++|
T Consensus 264 ~g~~IisCPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~-~~~~~vf~~Gk~v~-kv~ 341 (360)
T PRK00366 264 RGPEVISCPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGG-NPKGPVFVDGEKIK-TLP 341 (360)
T ss_pred CCCeEEECCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecC-CCceEEEECCEEee-eeC
Confidence 899999999999999999999999999999998 899999999999999999999999997 66778999999999 599
Q ss_pred hhHHHHHHHHHHHhc
Q 004907 700 MEQATDALIQLIKDH 714 (724)
Q Consensus 700 eeeavd~Li~lIk~~ 714 (724)
+++++|+|+++|.+.
T Consensus 342 ~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 342 EENIVEELEAEIEAY 356 (360)
T ss_pred hHhHHHHHHHHHHHH
Confidence 999999999999864
No 8
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated
Probab=99.82 E-value=2.3e-20 Score=207.55 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=92.7
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 600 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 600 (724)
.+++|||| +||...||++||+|++++.++|++||| ||||||||++++|+||||+|||+||.|||||||||||+++
T Consensus 202 ~diviS~K---sSnv~~mi~AyrlLa~~~d~eg~~YPL--HLGVTEAG~g~~G~IKSavGIG~LL~dGIGDTIRVSLT~d 276 (606)
T PRK00694 202 RDVVFSMK---SSNPKVMVAAYRQLAKDLDARGWLYPL--HLGVTEAGSGTDGIIKSAVGIGTLLSEGLGDTIRCSLTGC 276 (606)
T ss_pred CcEEEEEE---cCCHHHHHHHHHHHHHHhhccCCCcCc--eeccccCcCCCCceeHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 78999999 999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChhhhhHHHHHHHHHhhccCCcc
Q 004907 601 DFDFLRDTSFNLLQGCRMRNTKT 623 (724)
Q Consensus 601 ~~~~i~~v~~~ILQa~r~R~~kt 623 (724)
|++|+ ++|+.||+...-|..+.
T Consensus 277 P~~Ev-~va~~ll~~~~~~~~~~ 298 (606)
T PRK00694 277 PTNEI-PVCISLLKHTTEYLELP 298 (606)
T ss_pred hHHHH-HHHHHHHHHHHHhhccC
Confidence 99998 79999999998776543
No 9
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=99.81 E-value=4.2e-20 Score=206.62 Aligned_cols=146 Identities=21% Similarity=0.290 Sum_probs=114.3
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 600 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 600 (724)
.+++|||| +|+..++|+++|+|+++|.++|++||| ||++||+|++++++||||+|+|+||+||||||||||++++
T Consensus 198 ~diviS~K---sS~~~~~V~AyRlLa~~l~~~g~dyPL--HLGvTEAG~~edg~IKSAigiGaLL~DGIGDTIRVSlt~d 272 (611)
T PRK02048 198 TDVVISIK---ASNTVVMVRTVRLLVAVMEAEGMHYPL--HLGVTEAGDGEDGRIKSAVGIGALLADGIGDTIRVSLSEE 272 (611)
T ss_pred CcEEEEEE---eCCcHHHHHHHHHHHHHHHhcCCCCce--EEEEecCCCCcCceehhHHHHHHHHhcCCccEEEEeCCCC
Confidence 78999999 999999999999999999999999999 9999999999999999999999999999999999999988
Q ss_pred ChhhhhHHHHHHHHHhhccCCcc--eeecCCCCccccccHHHHHHHHHHHh----cCCCCcEEEEeeeeecC-C--CCCC
Q 004907 601 DFDFLRDTSFNLLQGCRMRNTKT--EYVSCPSCGRTLFDLQEISAEIREKT----SHLPGVSIAIMGCIVNG-P--GEMA 671 (724)
Q Consensus 601 ~~~~i~~v~~~ILQa~r~R~~kt--e~ISCPsCGRTlfDLq~~~~~Ik~~t----~hLkgvkIAVMGCIVNG-P--GEma 671 (724)
|++++ ++||+|||+.|.|.... .....|. ||.....+|..... ++.+++.+.-+ -++ + -..+
T Consensus 273 P~~Ev-~vAf~ILQa~r~R~~~~~~~~~~~~~-----f~~~~~~rR~~~~~~~igg~~~~~V~~~~---~~~~~~~~~~~ 343 (611)
T PRK02048 273 PEAEI-PVARKLVDYIRSRENHPYIPGMEAPG-----FDYLSPSRRKTRAVRNIGGDHLPVVIADR---MDGDFEFDPQF 343 (611)
T ss_pred hHHHH-HHHHHHHHHHHhhccCCCCCcccCCC-----CCCCCcccccccceeccCCcccceEEeec---cccccccccCC
Confidence 88776 89999999999998753 1111121 67766665544443 33333433332 111 1 1233
Q ss_pred CCceeeecC
Q 004907 672 DADFGYVGG 680 (724)
Q Consensus 672 dAD~GyvGg 680 (724)
-+||-|.|.
T Consensus 344 ~~D~i~~~~ 352 (611)
T PRK02048 344 LPDYIYAGR 352 (611)
T ss_pred CCceEeecc
Confidence 578888874
No 10
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=99.70 E-value=3.3e-17 Score=185.71 Aligned_cols=92 Identities=20% Similarity=0.233 Sum_probs=88.3
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 600 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 600 (724)
++++|||| +||...+|+++|+|+++|.++|++||| ||++||+|++++++||||+|+|+||+||||||||||++++
T Consensus 267 ~diviS~K---sSn~~~~V~AyR~La~~L~~~g~~yPL--hLgvTEAG~~edg~IKSAigiGaLL~DGIGDTIRVSlt~d 341 (733)
T PLN02925 267 HNFVFSMK---ASNPVVMVQAYRLLVAEMYVLGWDYPL--HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEP 341 (733)
T ss_pred CcEEEEEE---cCChHHHHHHHHHHHHHHHhcCCCCce--EEEEecCCCCcCceehhHHHHHHHHhcCCccEEEEECCCC
Confidence 78999999 999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ChhhhhHHHHHHHHHhhc
Q 004907 601 DFDFLRDTSFNLLQGCRM 618 (724)
Q Consensus 601 ~~~~i~~v~~~ILQa~r~ 618 (724)
|++|+ ++|+.|+....-
T Consensus 342 P~~Ev-pva~~Lv~~~~~ 358 (733)
T PLN02925 342 PEEEI-DPCRRLANLGMK 358 (733)
T ss_pred chhhc-hHHHHHHHHHHh
Confidence 99998 899999987644
No 11
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=99.64 E-value=2.7e-16 Score=167.78 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=72.2
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 600 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 600 (724)
+++++|+| +|+...++++||+|.++ ++||| |||+||||.+.+|+||||+|+|+||.|||||||||||+++
T Consensus 175 ~~iviS~K---sS~v~~~i~ayrlla~~-----~dyPL--HlGvTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~~ 244 (360)
T PRK00366 175 DDIKISVK---ASDVQDLIAAYRLLAKR-----CDYPL--HLGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTAD 244 (360)
T ss_pred CcEEEEEE---cCCHHHHHHHHHHHHhc-----CCCCc--eecccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCCC
Confidence 78999999 99999999999999875 48999 9999999999999999999999999999999999999999
Q ss_pred Chhhhh
Q 004907 601 DFDFLR 606 (724)
Q Consensus 601 ~~~~i~ 606 (724)
|++|++
T Consensus 245 P~~EV~ 250 (360)
T PRK00366 245 PVEEVK 250 (360)
T ss_pred CHHHHH
Confidence 998874
No 12
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=99.64 E-value=3.8e-16 Score=165.72 Aligned_cols=76 Identities=18% Similarity=0.277 Sum_probs=71.8
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 600 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 600 (724)
+++++|+| +|+...++.+||+|.++ ++||| |||+||||.+.+|+||||+|||+||.|||||||||||+++
T Consensus 166 ~diviS~K---sSdv~~~i~ayr~la~~-----~dyPL--HlGVTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~d 235 (346)
T TIGR00612 166 RNVVLSMK---ASDVAETVAAYRLLAER-----SDYPL--HLGVTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTDD 235 (346)
T ss_pred CcEEEEEE---cCCHHHHHHHHHHHHhh-----CCCCc--eeccccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCCC
Confidence 68999999 99999999999999874 57999 9999999999999999999999999999999999999999
Q ss_pred Chhhhh
Q 004907 601 DFDFLR 606 (724)
Q Consensus 601 ~~~~i~ 606 (724)
|++|+.
T Consensus 236 P~~EV~ 241 (346)
T TIGR00612 236 PTHEVP 241 (346)
T ss_pred cHHHHH
Confidence 998873
No 13
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli. It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.
Probab=99.58 E-value=1.8e-15 Score=161.66 Aligned_cols=75 Identities=27% Similarity=0.451 Sum_probs=66.3
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 600 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 600 (724)
+++++|+| +|+...+++++|+|.+++. ||| |||+||||..++|+||||+++|+||.||||||||||++++
T Consensus 175 ~~iviSlK---sSdv~~~i~ayr~la~~~d-----yPL--HLGvTEAG~~~~g~IkSsigiG~LL~~GIGDTIRVSLt~~ 244 (359)
T PF04551_consen 175 DDIVISLK---SSDVPETIEAYRLLAERMD-----YPL--HLGVTEAGTGEDGTIKSSIGIGALLLDGIGDTIRVSLTGD 244 (359)
T ss_dssp GGEEEEEE---BSSHHHHHHHHHHHHHH-------S-E--EEEBSSEESCHHHHHHHHHHHHHHHHTT--SEEEE-ECSS
T ss_pred CcEEEEEE---eCChHHHHHHHHHHHHhcC-----CCe--EEeecCCCCcccchhHHHHHHHHHHHcCCCCEEEEECCCC
Confidence 78999999 9999999999999999764 998 9999999999999999999999999999999999999999
Q ss_pred Chhhh
Q 004907 601 DFDFL 605 (724)
Q Consensus 601 ~~~~i 605 (724)
|++|+
T Consensus 245 p~~EV 249 (359)
T PF04551_consen 245 PVEEV 249 (359)
T ss_dssp CCCHH
T ss_pred chHHH
Confidence 99876
No 14
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=99.53 E-value=9e-15 Score=154.97 Aligned_cols=75 Identities=20% Similarity=0.282 Sum_probs=71.3
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 600 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 600 (724)
.++++|+| .|+...+|.+||.|.++ ++||| |||+||||.+..|.||||+++|.||.+||||||||||+++
T Consensus 168 ~~i~iS~K---~Sdv~~~v~aYr~lA~~-----~dyPL--HLGvTEAG~~~~G~VkSa~alg~LL~eGIGDTIRVSLt~~ 237 (361)
T COG0821 168 DDIKVSVK---ASDVQLMVAAYRLLAKR-----CDYPL--HLGVTEAGMGFKGIVKSAAALGALLSEGIGDTIRVSLTAD 237 (361)
T ss_pred CcEEEEEE---cCCHHHHHHHHHHHHHh-----cCCCc--ccceecccCcccceehHHHHHHHHHHhcCCceEEEecCCC
Confidence 58999999 99999999999999874 57999 9999999999999999999999999999999999999999
Q ss_pred Chhhh
Q 004907 601 DFDFL 605 (724)
Q Consensus 601 ~~~~i 605 (724)
|++|+
T Consensus 238 P~~EV 242 (361)
T COG0821 238 PVEEV 242 (361)
T ss_pred chhhh
Confidence 99887
No 15
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=97.59 E-value=0.0033 Score=70.78 Aligned_cols=177 Identities=16% Similarity=0.201 Sum_probs=126.1
Q ss_pred cccccCCCCceeEEEee----eecCCC-----------CCeEEeeccCCCCCCHHHHHHHHHHHHH--------------
Q 004907 79 SIHKTVRRKTRTVMVGN----VAIGSE-----------HPIRVQTMTTNDTKDVAGTVEEVMRIAD-------------- 129 (724)
Q Consensus 79 s~~~~~Rr~Tr~V~VG~----V~IGG~-----------~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------- 129 (724)
.+.....-+-|+|.||. ++|||+ ||.+|=-.- .|+.+-++-.+.+..+.+
T Consensus 52 ~l~~~~~ppi~~V~iG~G~~~~~iGGEtvL~rhe~tf~np~~Ia~eI-~D~l~~e~i~~r~~~~~~~~~~rvG~~~~AD~ 130 (450)
T PRK04165 52 KLEEASAPPIREVKIGTGERAVKIGGETVLYRHEKTFFNPTGIAVDV-SDTMDDEEIDARLKKINNFQFERVGEILKLDM 130 (450)
T ss_pred HHHHHhCCCceeeeecCCCeEEEECCcceeeecCcCCCCCCEEEEEE-eCCCChHHHHHHHHHhhcchHhhhcccccCCE
Confidence 34445555678899984 889994 566665444 777777777777777722
Q ss_pred -----------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccc--cCCCCCcchhhhhhccccchHHHHHHh
Q 004907 130 -----------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIR--VNPGNFADRRAQFEQLEYTDDEYQKEL 196 (724)
Q Consensus 130 -----------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiR--INPGNig~~~k~f~~~~Ytdeey~~el 196 (724)
.+..+.+.+. +.+++||+-|- ||+..+.+|++.....| ||.-|.
T Consensus 131 IaL~~~s~dp~~v~~~Vk~V~-~~~dvPLSIDT-~dpevleaAleagad~~plI~Sat~--------------------- 187 (450)
T PRK04165 131 VALRNASGDPEKFAKAVKKVA-ETTDLPLILCS-EDPAVLKAALEVVADRKPLLYAATK--------------------- 187 (450)
T ss_pred EEEeCCCCCHHHHHHHHHHHH-HhcCCCEEEeC-CCHHHHHHHHHhcCCCCceEEecCc---------------------
Confidence 2334444332 34689999998 99999999999854333 555442
Q ss_pred hhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHH
Q 004907 197 QHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAY 276 (724)
Q Consensus 197 e~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ay 276 (724)
+++.++.+.|+++|.|+ |... . . ++++.+.++.|+++|+.||++.-=..+...+++-|
T Consensus 188 ----dN~~~m~~la~~yg~pv-Vv~~-----~----------d--l~~L~~lv~~~~~~GI~dIILDPg~ggf~ksl~~~ 245 (450)
T PRK04165 188 ----ENYEEMAELAKEYNCPL-VVKA-----P----------N--LEELKELVEKLQAAGIKDLVLDPGTENIKETLDDF 245 (450)
T ss_pred ----chHHHHHHHHHHcCCcE-EEEc-----h----------h--HHHHHHHHHHHHHcCCCcEEECCCCchhhhhHHHH
Confidence 14667899999999999 2211 0 1 78889999999999999999987666677777777
Q ss_pred HHHHHH---hhcCCCCccccccccccCC
Q 004907 277 RLLVAE---MYVHGWDYPLHLGVTEAGE 301 (724)
Q Consensus 277 rlla~~---m~~~g~dYPLHLGVTEAG~ 301 (724)
.++.+. ..-+-..||+=.|++++-.
T Consensus 246 ~~iRr~Al~~~~~~lgyPil~~~s~k~~ 273 (450)
T PRK04165 246 VQIRRAAIKKGDRPLGYPIIAFPIEAWM 273 (450)
T ss_pred HHHHhhhhhcccccCCCCEEEcchhhcc
Confidence 766555 3445567999999998765
No 16
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=97.46 E-value=0.00072 Score=77.47 Aligned_cols=121 Identities=23% Similarity=0.363 Sum_probs=85.9
Q ss_pred CCeEEeeCC------CCChhhhhHHHHHHHHHhhccCC------cceeecCCC---CccccccHHHH----HHHHHHHhc
Q 004907 590 GDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNT------KTEYVSCPS---CGRTLFDLQEI----SAEIREKTS 650 (724)
Q Consensus 590 GDtIrvsl~------~~~~~~i~~v~~~ILQa~r~R~~------kte~ISCPs---CGRTlfDLq~~----~~~Ik~~t~ 650 (724)
|..||++.. .-+.+.+. -....|+..++... -...+|||+ |+--+.|-+.. +.++++.+.
T Consensus 385 g~~irlT~~Qnl~l~~i~~~~~~-~l~~~L~~~gl~~~~~~~~~~~~ivAC~G~~~C~~a~~~t~~~a~~l~~~l~~~~~ 463 (569)
T PRK13504 385 KGDFRLTANQNLIIANVPPSDKA-KIEALLREYGLIDGVEESPLRRNSMACVALPTCGLAMAEAERYLPSFIDRIEALLA 463 (569)
T ss_pred CCEEEEeCCCCEEEcCCCHHHHH-HHHHHHHhCCCCCCCCCCCceeceeecCCcccccchhhhHHHHHHHHHHHHHHHHh
Confidence 346888754 23333332 23567888887432 235689986 98888887764 455555543
Q ss_pred C--C-C-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceee--------eecCChhHHHHHHHHHHH
Q 004907 651 H--L-P-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVV--------KRGIAMEQATDALIQLIK 712 (724)
Q Consensus 651 h--L-k-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V--------~~~Ipeeeavd~Li~lIk 712 (724)
. + | +++|.|-||. ||=|...-||+|++|..++.+.+|.|+..- ...||.+++.+.+..+++
T Consensus 464 ~~~l~~~~i~I~vSGCp-n~Ca~~~iaDIG~vG~~~~~y~i~lGG~~~~~~~~~~~~~~v~~~~v~~~l~~ll~ 536 (569)
T PRK13504 464 KHGLSDEHIVIRMTGCP-NGCARPYLAEIGLVGKAPGRYNLYLGGSFNGTRLPKMYRENITEEEILATLDPLLG 536 (569)
T ss_pred hcCCCCCceEEEEeCCc-ccccccccCcEEEEecCCCeEEEEECCCCCCCccchHhhcCCCHHHHHHHHHHHHH
Confidence 3 4 4 7899999996 888899999999999888899999998642 246999998776665554
No 17
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.35 E-value=0.0053 Score=73.75 Aligned_cols=119 Identities=15% Similarity=0.248 Sum_probs=85.4
Q ss_pred eeCCCCChhhhhHHHHHHHHHhhccCCc------ceeecCCC---CccccccHHHHHHHHHHHhcC--CC-CcEEEEeee
Q 004907 595 LEAPGQDFDFLRDTSFNLLQGCRMRNTK------TEYVSCPS---CGRTLFDLQEISAEIREKTSH--LP-GVSIAIMGC 662 (724)
Q Consensus 595 vsl~~~~~~~i~~v~~~ILQa~r~R~~k------te~ISCPs---CGRTlfDLq~~~~~Ik~~t~h--Lk-gvkIAVMGC 662 (724)
|.+.+.+.+.+..+ +.=|+.+++.... ...+|||+ |..-+.|-+.++.+++++... +| .+||+|-||
T Consensus 603 i~L~~i~~~~l~~v-~~~L~~~Gl~~~~~~g~~vr~v~aC~G~~~C~~g~~dt~~la~~l~~~~~~~~~P~k~ki~vSGC 681 (847)
T PRK14989 603 IGLFGAQKDDLPEI-WRQLIEAGFETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGC 681 (847)
T ss_pred eEeCCCCHHHHHHH-HHHHHHCCCCcCCCCCCCcCceeeCCCCCccccccccHHHHHHHHHHHhccCCCCCceEEEEeCC
Confidence 34555555555333 3334545555432 25899997 777788888899999999854 45 789999999
Q ss_pred eecCCCCCCCCceeeecCCCceeEeeecc---------eeeeecCChhHHHHH---HHHHHHhccc
Q 004907 663 IVNGPGEMADADFGYVGGAPGKIDLYVGK---------TVVKRGIAMEQATDA---LIQLIKDHGR 716 (724)
Q Consensus 663 IVNGPGEmadAD~GyvGg~pGki~Ly~gk---------e~V~~~Ipeeeavd~---Li~lIk~~g~ 716 (724)
. |.=++..-+|+|++|. ...+.+|.|+ ..+.+.+|++++.+- +++.-+++++
T Consensus 682 ~-~~C~~~~i~DiG~i~~-~~G~~v~vGG~~G~~~~~g~~l~~~~~~~~v~~~i~~~l~~y~~~~~ 745 (847)
T PRK14989 682 T-RECAEAQGKDVGIIAT-EKGWNLYVCGNGGMKPRHADLLAADLDRETLIKYLDRFMMFYIRTAD 745 (847)
T ss_pred c-ccccccccccEEEEEe-cCceEEEECCCCCCCCcceeeecCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 5 8889999999999996 4568999987 235557999988775 4444556664
No 18
>PLN00178 sulfite reductase
Probab=97.32 E-value=0.0014 Score=76.31 Aligned_cols=121 Identities=17% Similarity=0.305 Sum_probs=82.5
Q ss_pred CCeEEeeCC------CCChhhhhHHHHHHHHHhhccCCcc------eeecCC---CCccccccHHHHHHHHHH----Hhc
Q 004907 590 GDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTKT------EYVSCP---SCGRTLFDLQEISAEIRE----KTS 650 (724)
Q Consensus 590 GDtIrvsl~------~~~~~~i~~v~~~ILQa~r~R~~kt------e~ISCP---sCGRTlfDLq~~~~~Ik~----~t~ 650 (724)
|..||++.. +-+.+.+ +-...+|+..++..... ..++|| +|+-.+.|-+..+..+.+ .+.
T Consensus 433 g~~iRlT~~Qnlil~~I~~~~~-~~i~~~L~~~Gl~~~~~~~~~~r~~vAC~G~~~C~lA~~et~~~a~~l~~~l~~~~~ 511 (623)
T PLN00178 433 NLPVRLTPNQNLILCDIRPAWK-EPITAALAAAGLLEPEEVDPLNRTAMACPALPLCPLAITEAERGIPDILKRVRAMFN 511 (623)
T ss_pred CCcEEEeCCCCEEEcCCCHHHH-HHHHHHHHhCCCCCCCCCCcceeeeeecCCCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence 446888753 3333332 22356788888863321 346896 598888877666544444 332
Q ss_pred --CC--C-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecce--------eeeecCChhHHHHHHHHHHH
Q 004907 651 --HL--P-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKT--------VVKRGIAMEQATDALIQLIK 712 (724)
Q Consensus 651 --hL--k-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke--------~V~~~Ipeeeavd~Li~lIk 712 (724)
.+ + .++|.|-||. ||=|.-.-||+|++|.+++++++|.|+. .+..+||++|+.+.|..+++
T Consensus 512 ~~~l~~~~~i~I~vSGCp-NgCarp~iaDIGlvG~~~~~Y~I~lGG~~~~~~la~~~~~~V~~eei~~~le~ll~ 585 (623)
T PLN00178 512 KVGLKYDESVVVRMTGCP-NGCARPYMAELGFVGDGPNSYQIWLGGTPNQTRLAEPFMDKVKVDDLEKVLEPLFY 585 (623)
T ss_pred hcCCCCCCceEEEEeCCC-ccccccccCcEEEEcCCCCeEEEEECCCCCcccccchhhcCcCHHHHHHHHHHHHH
Confidence 23 2 5899999995 8889999999999998888999999873 23357999997776655554
No 19
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=97.19 E-value=0.0028 Score=73.10 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=85.4
Q ss_pred CCCeEEeeCC------CCChhhhhHHHHHHHHHhhccCCc------ceeecCCC---CccccccHHH----HHHHHHHHh
Q 004907 589 LGDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTK------TEYVSCPS---CGRTLFDLQE----ISAEIREKT 649 (724)
Q Consensus 589 iGDtIrvsl~------~~~~~~i~~v~~~ILQa~r~R~~k------te~ISCPs---CGRTlfDLq~----~~~~Ik~~t 649 (724)
.|.++|++.. .-+.+.+ +-...+|+..++.... -..++||+ |+..+.|-+. +++++++.+
T Consensus 394 yg~~irlT~~Qnl~l~~V~~~~~-~~i~~~L~~~Gl~~~~~~~~~~~~~~aC~G~~~C~lal~et~~~~~~l~~~l~~l~ 472 (577)
T TIGR02042 394 YNLPVRLTPNQNIILYDIQPEWK-RAITTVLAQRGVLQPEAIDPLNRYAMACPALPTCGLAITESERAIPGILKRIRALL 472 (577)
T ss_pred hCCCEEEcCCCCeEECCCCHHHH-HHHHHHHHhcCCCCCCCCCccceeeEeCCCcccccCchHHHHHHHHHHHHHHHHHH
Confidence 3446887643 3334333 2235678887775421 13689997 9988777663 556666655
Q ss_pred c--CCC--CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceee--------eecCChhHHHHHHHHHHH
Q 004907 650 S--HLP--GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVV--------KRGIAMEQATDALIQLIK 712 (724)
Q Consensus 650 ~--hLk--gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V--------~~~Ipeeeavd~Li~lIk 712 (724)
. .++ ++||+|-||- ||=|.-.-||+|++|..+++++||.|+..- .+.||++++.+.|..+++
T Consensus 473 ~~~~l~~~~i~I~vSGCp-n~Ca~p~iaDIG~vG~~~~~y~l~lGG~~~~~rla~~~~~~vp~~ei~~vl~~ll~ 546 (577)
T TIGR02042 473 EKVGLPDEHFVVRMTGCP-NGCARPYMAELGFVGSAPNSYQVWLGGSPNQTRLARPFIDKLKDGDLEKVLEPLFV 546 (577)
T ss_pred HhcCCCCCCcEEEEECCC-ccccCCCcCcEEEECCCCCcEEEEECCCCCcccchhHHhcCcCHHHHHHHHHHHHH
Confidence 3 343 6999999995 888999999999999888889999987432 246999998887666554
No 20
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=97.14 E-value=0.0029 Score=69.24 Aligned_cols=105 Identities=19% Similarity=0.185 Sum_probs=76.7
Q ss_pred HHHHHHhhccC------CcceeecCCCCc---cccccHHHHHHHHHHHhc------CCC-CcEEEEeeeeecCCCCCCCC
Q 004907 610 FNLLQGCRMRN------TKTEYVSCPSCG---RTLFDLQEISAEIREKTS------HLP-GVSIAIMGCIVNGPGEMADA 673 (724)
Q Consensus 610 ~~ILQa~r~R~------~kte~ISCPsCG---RTlfDLq~~~~~Ik~~t~------hLk-gvkIAVMGCIVNGPGEmadA 673 (724)
+..|+..++-. +-.+.++||.|| .-++|...++.++.+.+. .|| .+||+|-||- |+-+..--+
T Consensus 70 ~~~l~~~GL~~~~~~g~~~Rnv~~cp~~g~~~~~~~dt~~la~~l~~~l~~~~~~~~LPrKfki~vsgc~-~~c~~~~~~ 148 (390)
T TIGR02435 70 SQALLAAGLGAAGAAADDIRNIEVSPLAGIDPGEIADTRPLAAELRAALENERALLELPPKFSVAIDGGG-RLVLLGDTA 148 (390)
T ss_pred HHHHHHCCCCCccccCCcccccccCccccCCCccccchHHHHHHHHHHHhcChhhhcCCCceEEEEECCC-ccccCCCCC
Confidence 34455555532 234799999998 457899999999998763 467 7899999997 888888899
Q ss_pred ceeeecCCCce---eEeeecc-----eeeeecCChhHHHHHHHHHHH---hccc
Q 004907 674 DFGYVGGAPGK---IDLYVGK-----TVVKRGIAMEQATDALIQLIK---DHGR 716 (724)
Q Consensus 674 D~GyvGg~pGk---i~Ly~gk-----e~V~~~Ipeeeavd~Li~lIk---~~g~ 716 (724)
|+|+++...+. +.+|.|+ ..+. .||.+++++.+..+++ ++|.
T Consensus 149 DIG~~~~~~~~~~gf~v~vGG~~~~~~~~~-~v~~~~v~~~v~av~~~~~~~g~ 201 (390)
T TIGR02435 149 DVRLQALTTGAGVAWVVSLAGISTSARSLV-TVAPDAAVPVAVALLRVFVELGG 201 (390)
T ss_pred CEEEEEEecCCEEEEEEEEecCCCCCCceE-EeCHHHHHHHHHHHHHHHHHhCc
Confidence 99999864444 7888876 2233 3899999886666554 5553
No 21
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.01 E-value=0.0041 Score=73.81 Aligned_cols=117 Identities=18% Similarity=0.273 Sum_probs=81.5
Q ss_pred CCCCChhhhhHHHHHHHHHhhcc----CCcceeecCCC---CccccccHHHHHHHHHHHhcC--CC-CcEEEEeeeeecC
Q 004907 597 APGQDFDFLRDTSFNLLQGCRMR----NTKTEYVSCPS---CGRTLFDLQEISAEIREKTSH--LP-GVSIAIMGCIVNG 666 (724)
Q Consensus 597 l~~~~~~~i~~v~~~ILQa~r~R----~~kte~ISCPs---CGRTlfDLq~~~~~Ik~~t~h--Lk-gvkIAVMGCIVNG 666 (724)
+.+.+.+.+..+ +.-|+..++- .+--..+|||+ |..-.+|-+.++.+++++... +| .+||+|-||. |.
T Consensus 595 l~gi~~~~l~~i-~~~L~~~gl~~~~g~~~r~v~aC~G~~~C~~g~~ds~~la~~l~~~~~~~~~p~k~ki~vSGC~-~~ 672 (785)
T TIGR02374 595 LFGAKKDDLPNI-WKDLKMPGYEHAYGKALRTVKTCVGSQWCRYGNQDSVQLAIQLERRYEGLRTPHKIKIGVSGCE-RE 672 (785)
T ss_pred ECCCCHHHHHHH-HHHHHhCCCCCCCCCCccCcccCCCccccCcchhhHHHHHHHHHHHhcccCCCCceEEEEECCc-cc
Confidence 444555555333 4445655552 12236789985 666677888888999988864 45 7899999999 88
Q ss_pred CCCCCCCceeeecCCCceeEeeecce---------eeeecCChhHHHHHH---HHHHHhccc
Q 004907 667 PGEMADADFGYVGGAPGKIDLYVGKT---------VVKRGIAMEQATDAL---IQLIKDHGR 716 (724)
Q Consensus 667 PGEmadAD~GyvGg~pGki~Ly~gke---------~V~~~Ipeeeavd~L---i~lIk~~g~ 716 (724)
=++..-+|+|++|. ++.+.+|.|+. .+...+|+|++++-+ ++.-+++++
T Consensus 673 C~~~~~~DiG~i~~-~~g~~v~vGG~~g~~~~~a~~l~~~~~~e~v~~~i~~~l~~y~~~~~ 733 (785)
T TIGR02374 673 CAEAAGKDVGVIAT-EKGWNLYVGGNGGTHPRHGDLLAVDEDEETLIGYIDRFLQYYRETAD 733 (785)
T ss_pred cchhhhCcEEEEEe-cCCeEEEECCcCCCCCcceeeecCCCCHHHHHHHHHHHHHHHHHhCc
Confidence 89999999999996 45689999873 344457888877654 444456654
No 22
>PF01077 NIR_SIR: Nitrite and sulphite reductase 4Fe-4S domain; InterPro: IPR006067 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP) (IPR005117 from INTERPRO), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a siroheme through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. In the E. coli SiR-HP enzyme (1.8.1.2 from EC), the iron is bound to cysteine residues at positions 433, 439, 478 and 482, the latter also forming the siroheme ligand.; GO: 0016491 oxidoreductase activity, 0020037 heme binding, 0051536 iron-sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 1ZJ8_B 1ZJ9_A 2AKJ_A 3VKT_A 3VKR_A 3VKS_A 3B0M_A 3B0N_A 3VKP_A 3B0J_A ....
Probab=96.99 E-value=0.0025 Score=60.77 Aligned_cols=88 Identities=26% Similarity=0.550 Sum_probs=61.9
Q ss_pred eeecCCC---CccccccHHHHHHHHHHHh------cCCC-CcEEEEeeeeecCCCCCCCCceeeecCC-Cc---eeEeee
Q 004907 624 EYVSCPS---CGRTLFDLQEISAEIREKT------SHLP-GVSIAIMGCIVNGPGEMADADFGYVGGA-PG---KIDLYV 689 (724)
Q Consensus 624 e~ISCPs---CGRTlfDLq~~~~~Ik~~t------~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~-pG---ki~Ly~ 689 (724)
+.++||+ |.--++|-..++.+|.+++ ..+| .+||+|=||. |+=+...-+|+|++|.. ++ .+.+|.
T Consensus 7 nv~aC~g~~~C~~a~~dt~~la~~l~~~~~~~~~~~~lp~k~kI~isGCp-n~C~~~~i~DIG~~g~~~~~~~~g~~v~v 85 (157)
T PF01077_consen 7 NVTACPGSGFCPLALIDTKPLARELEDYLEERFEDPNLPRKFKIAISGCP-NSCARPQINDIGFIGVKKPNGEEGFDVYV 85 (157)
T ss_dssp HEEESTGGGTBTT-SSBHHHHHHHHHHHTHHHHHCSCSSS-BEEEEESST-TSTTSGGGSSEEEEEEEESTCEEEEEEEE
T ss_pred ccccCCChhhCchHHhCHHHHhhHhhhcccccccccccccccccceeecc-cccccccccccccceeeeccccceeeeee
Confidence 6789998 5577788888999999443 3566 7999999997 56677778899999962 22 689999
Q ss_pred ccee---------ee--ecCChhHHHHHHHHHHH
Q 004907 690 GKTV---------VK--RGIAMEQATDALIQLIK 712 (724)
Q Consensus 690 gke~---------V~--~~Ipeeeavd~Li~lIk 712 (724)
|+.. +. .-+|+|++++-+..++.
T Consensus 86 GG~~g~~~~~~~~~~~~~~~~~ee~~~~i~~il~ 119 (157)
T PF01077_consen 86 GGGLGRHPRLGRELALAGFVPEEEVLEVIEAILE 119 (157)
T ss_dssp S-BESTSTBEBEEEEEEEEEEGGGHHHHHHHHHH
T ss_pred cccccCCCCccceeeccccccHHHHHHHHHHHHH
Confidence 7643 22 24788877765444443
No 23
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=96.96 E-value=0.02 Score=65.06 Aligned_cols=92 Identities=20% Similarity=0.343 Sum_probs=69.3
Q ss_pred eeecCCCCccc---cccHHHHHHHHHHHh----------cCCC-CcEEEEeeeeecCCCCCCCCceeeecC-CCc--eeE
Q 004907 624 EYVSCPSCGRT---LFDLQEISAEIREKT----------SHLP-GVSIAIMGCIVNGPGEMADADFGYVGG-APG--KID 686 (724)
Q Consensus 624 e~ISCPsCGRT---lfDLq~~~~~Ik~~t----------~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg-~pG--ki~ 686 (724)
+.++||.||-. ++|.+.++.++.+.+ .+|| .+||+|-||. |.-+...-+|+|+++. ..| .+.
T Consensus 140 nv~~~P~ag~~~~e~~D~~~la~~l~~~~~~~~~~~~~~~~LPrKfki~vsGc~-~~c~~~~i~DiG~~~~~~~~~~gf~ 218 (513)
T PRK09566 140 NITGSPVAGIDPDELIDTRPLTQKLQDMLTNNGEGNPEFSNLPRKFNIAIAGGR-DNSVHAEINDIAFVPAYKDGVLGFN 218 (513)
T ss_pred CccCCCCCCCCcchhhHHHHHHHHHHHHhhcccCCCCcccCCCCceEEEEECCC-CCcccccccceEEEEEEECCeeEEE
Confidence 68899998875 799999999999876 3688 7899999997 6668888899999985 222 477
Q ss_pred eeeccee----------eeecCChhHHHHHHHH---HHHhccc
Q 004907 687 LYVGKTV----------VKRGIAMEQATDALIQ---LIKDHGR 716 (724)
Q Consensus 687 Ly~gke~----------V~~~Ipeeeavd~Li~---lIk~~g~ 716 (724)
+|.|+.. +..-||++++++-+.. .-+++|.
T Consensus 219 v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~av~~~f~~~g~ 261 (513)
T PRK09566 219 VLVGGFFSSQRCAYAIPLNAWVKPDEVVRLCRAILEVYRDNGL 261 (513)
T ss_pred EEEecccCCCCCcCceeeeeecCHHHHHHHHHHHHHHHHHhCC
Confidence 8987642 1223888888775444 4467763
No 24
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=96.75 E-value=0.0046 Score=70.70 Aligned_cols=120 Identities=18% Similarity=0.289 Sum_probs=83.6
Q ss_pred CeEEeeCC------CCChhhhhHHHHHHHHHhhccCCc-----ceeecCCC---CccccccHHHHHHHHH----HHhcC-
Q 004907 591 DGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTK-----TEYVSCPS---CGRTLFDLQEISAEIR----EKTSH- 651 (724)
Q Consensus 591 DtIrvsl~------~~~~~~i~~v~~~ILQa~r~R~~k-----te~ISCPs---CGRTlfDLq~~~~~Ik----~~t~h- 651 (724)
..||++.. .-+.+.+. -...+|+.+++.... ...+|||+ |..-+.|-+..+.++. +++..
T Consensus 370 ~~irlT~~Qnl~l~~v~~~~~~-~l~~~l~~~gl~~~~~~~~~~~vvAC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~~~ 448 (541)
T TIGR02041 370 GDFRITPNQNLIIANVPEGGKA-KIEALARQYGLIDGKVTALRRNSMACVALPTCPLAMAEAERYLPDFIDKLDNIMEKH 448 (541)
T ss_pred CeEEEeCCCCEEEcCCCHHHHH-HHHHHHHHcCCCCCCCCceeeccEECCCccchhhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 35777643 33444332 234567777775421 23689986 7887788777665444 44421
Q ss_pred --CC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecce--------eeeecCChhHHHHHHHHHHH
Q 004907 652 --LP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKT--------VVKRGIAMEQATDALIQLIK 712 (724)
Q Consensus 652 --Lk-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke--------~V~~~Ipeeeavd~Li~lIk 712 (724)
.| ++||.|-||. ||=|...-||+|++|..++.+.+|.|+. .+..+||++++.+.+..+++
T Consensus 449 ~~~~~~~~I~iSGCp-n~Ca~~~~adIG~~G~~~~~y~l~lGG~~~~~~~g~~~~~~v~~~~v~~~v~~ll~ 519 (541)
T TIGR02041 449 GLADEEIVLRMTGCP-NGCGRPYLAEIGLVGKAPGRYNLMLGGNRRGQRLPRLYRENITEPEILAELDELLG 519 (541)
T ss_pred CCCCCceEEEEecCC-ccccccccCcEEEEEeccceEEEEECCCCCCCchhHHHHcCCCHHHHHHHHHHHHH
Confidence 23 6899999995 8889999999999998788899999874 34457999999887766655
No 25
>PRK09566 nirA ferredoxin-nitrite reductase; Reviewed
Probab=96.68 E-value=0.0071 Score=68.62 Aligned_cols=91 Identities=29% Similarity=0.522 Sum_probs=66.7
Q ss_pred ceeecCCC---CccccccHHHHHHHHHHHh---cCCC-CcEEEEeeeeecCCCCCCCCceeeecCC-------CceeEee
Q 004907 623 TEYVSCPS---CGRTLFDLQEISAEIREKT---SHLP-GVSIAIMGCIVNGPGEMADADFGYVGGA-------PGKIDLY 688 (724)
Q Consensus 623 te~ISCPs---CGRTlfDLq~~~~~Ik~~t---~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~-------pGki~Ly 688 (724)
...+|||+ |.--+.|-+..+.++-+.+ .++| ++||.|-||. |+=|-..-||+|++|.. ...+.+|
T Consensus 392 ~~~vaC~G~~~C~~a~~dT~~~a~~l~~~l~~~~~lp~~~kI~iSGCp-n~C~~~~iaDIG~~G~~~~~dg~~~~g~~i~ 470 (513)
T PRK09566 392 RGLVSCTGNQYCNFALIETKNRALALAKELDAELDLPQPVRIHWTGCP-NSCGQPQVADIGLMGTKARKNGKTVEGVDIY 470 (513)
T ss_pred cCceeCcCcccccccHhhHHHHHHHHHHHHHHhcCCCCceEEEEECCh-hhhhchhhCCEEEEEEEeecCCcccceEEEE
Confidence 36889985 7777777666555554444 2566 7999999996 66677789999999962 1358899
Q ss_pred ecce---------eeeecCChhHHHHHHHHHHHhc
Q 004907 689 VGKT---------VVKRGIAMEQATDALIQLIKDH 714 (724)
Q Consensus 689 ~gke---------~V~~~Ipeeeavd~Li~lIk~~ 714 (724)
.|+. .+...||.+|+.+.+..++.++
T Consensus 471 lGG~~g~~~~~g~~~~~~v~~~ev~~~i~~l~~~~ 505 (513)
T PRK09566 471 MGGKVGKDAKLGECVQKGIPCEDLKPVLKDLLIEQ 505 (513)
T ss_pred eCCccCccccccchhhcCcCHHHHHHHHHHHHHHH
Confidence 9863 3555799999999988866643
No 26
>COG0155 CysI Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism]
Probab=96.62 E-value=0.011 Score=67.77 Aligned_cols=121 Identities=22% Similarity=0.380 Sum_probs=89.0
Q ss_pred CeEEeeCCC------CChhhhhHHHHHHHHHhhccC----CcceeecCCC---CccccccHHH----HHHHHHHHhcCCC
Q 004907 591 DGLLLEAPG------QDFDFLRDTSFNLLQGCRMRN----TKTEYVSCPS---CGRTLFDLQE----ISAEIREKTSHLP 653 (724)
Q Consensus 591 DtIrvsl~~------~~~~~i~~v~~~ILQa~r~R~----~kte~ISCPs---CGRTlfDLq~----~~~~Ik~~t~hLk 653 (724)
+-||++... -+.+.. .....+|+..++-. -....++||+ |+-.+-+=+. ++++.++.+....
T Consensus 336 ~eiRlT~~QnLii~~v~~~~~-~~i~~~l~~~Gl~t~~~~l~~~~~AC~G~p~C~lA~aet~~~a~~i~~~l~~~~~~~~ 414 (510)
T COG0155 336 GEIRLTPNQNLIIPNVPEAEL-EAILRILAALGLVTAPSSLRRNSIACVGLPTCALALAETERDAPRIIARLEDLLDKHG 414 (510)
T ss_pred ccEEeccCcceEecCCCHHHH-HHHHHHHHHcCCCCCCcchhhhcccCCCCCchhhhHhhHHHHHHHHHHHHHhhhcccC
Confidence 567877542 233332 44578888888877 3457899965 9988777554 4445555444332
Q ss_pred -CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecc--------eeeeecCChhHHHHHHHHHHHh
Q 004907 654 -GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGK--------TVVKRGIAMEQATDALIQLIKD 713 (724)
Q Consensus 654 -gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gk--------e~V~~~Ipeeeavd~Li~lIk~ 713 (724)
+++|-+-||. ||=|--.-|++|++|..+|.+++|.|+ +..+.+++.+++.|.+-.|+..
T Consensus 415 ~~i~i~isGCp-n~Ca~~~~a~Igl~G~~~~~y~v~lGG~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~ 482 (510)
T COG0155 415 LPITLHISGCP-NGCGRPHLAEIGLVGKAKGGYQVYLGGGADGTRGGKLYGENVPAEEILDAIDRLIGR 482 (510)
T ss_pred CceeEEeccCc-chhcCcccCceeEeeccCcceEEEecCCCCCCccceeecCCCCHHHHHHHHHHHHHH
Confidence 6899999996 999998999999999999999999986 5667789999977766666654
No 27
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=96.40 E-value=0.017 Score=67.04 Aligned_cols=125 Identities=19% Similarity=0.266 Sum_probs=83.6
Q ss_pred hhcCCC-eEEeeCC------CCChhhhhHHHHHHHHHhhccCCc--c--eeecCC---CCccccccHHHHHHHHHHHhc-
Q 004907 586 VDGLGD-GLLLEAP------GQDFDFLRDTSFNLLQGCRMRNTK--T--EYVSCP---SCGRTLFDLQEISAEIREKTS- 650 (724)
Q Consensus 586 ~DGiGD-tIrvsl~------~~~~~~i~~v~~~ILQa~r~R~~k--t--e~ISCP---sCGRTlfDLq~~~~~Ik~~t~- 650 (724)
++-.|+ .||++.. .-+.+.+.. ....|+..++-... . ..++|| +|.--++|-+..+.++.+++.
T Consensus 398 A~~yg~g~irlT~~Qni~l~~V~~~~~~~-l~~~L~~~Gl~~~~~~~r~~~vAC~G~~~C~~a~~dT~~~a~~l~~~l~~ 476 (593)
T PRK09567 398 AARYGDGEIRLTVWQNLLISGVPDADVAA-VEAAIEALGLTTEASSIRAGLVACTGNAGCKFAAADTKGHALAIADYCEP 476 (593)
T ss_pred HHHhCCCEEEEeCCCCeEEcCCCHHHHHH-HHHHHHHcCCCCCCcceeeccEecCCCCCCCccHhhHHHHHHHHHHHHHH
Confidence 333443 3676543 333444322 24455655553322 2 368997 698888888776666655443
Q ss_pred --CCC-CcEEEEeeeeecCCCCCCCCceeeecCC--------CceeEeeeccee---------eeecCChhHHHHHHHHH
Q 004907 651 --HLP-GVSIAIMGCIVNGPGEMADADFGYVGGA--------PGKIDLYVGKTV---------VKRGIAMEQATDALIQL 710 (724)
Q Consensus 651 --hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~--------pGki~Ly~gke~---------V~~~Ipeeeavd~Li~l 710 (724)
.|+ ++||.|-|| -||=|-..-||+|++|.. .+++++|.|+.. +...||.+++.+.+..+
T Consensus 477 ~~~l~~~ikI~vSGC-pn~Ca~~~iaDIGfvG~~~~~~~g~~~~gy~v~lGG~~g~~~~lg~~~~~~vp~eev~~~l~~l 555 (593)
T PRK09567 477 RVALDQPVNIHLTGC-HHSCAQHYIGDIGLIGAKVAVSEGDTVEGYHIVVGGGFGEDAAIGREVFRDVKAEDAPRLVERL 555 (593)
T ss_pred hcCCCCCcEEEEECC-CccccccccCCEEEEeeEeccCCCCccceEEEEECCCCCCCCCcchHhhcCCCHHHHHHHHHHH
Confidence 466 899999999 498899999999999952 357899998742 23469999988876666
Q ss_pred HH
Q 004907 711 IK 712 (724)
Q Consensus 711 Ik 712 (724)
++
T Consensus 556 l~ 557 (593)
T PRK09567 556 LR 557 (593)
T ss_pred HH
Confidence 64
No 28
>PLN02431 ferredoxin--nitrite reductase
Probab=96.36 E-value=0.024 Score=65.86 Aligned_cols=90 Identities=23% Similarity=0.575 Sum_probs=66.4
Q ss_pred ceeecCCC---CccccccHHHHHHHHHHHhc---CCC-CcEEEEeeeeecCCCCCCCCceeeecCC----Cc----eeEe
Q 004907 623 TEYVSCPS---CGRTLFDLQEISAEIREKTS---HLP-GVSIAIMGCIVNGPGEMADADFGYVGGA----PG----KIDL 687 (724)
Q Consensus 623 te~ISCPs---CGRTlfDLq~~~~~Ik~~t~---hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~----pG----ki~L 687 (724)
.+.++||+ |+..+.|-...+.++.+.+. ++| ++||+|-||. |+=|...-||+|++|.. .| .+++
T Consensus 466 r~vvACtG~~~C~~ai~eTk~~A~~L~~~l~~~~~lp~k~kI~vSGCp-n~C~~~~iaDIG~vG~~~~~~~g~~v~gf~V 544 (587)
T PLN02431 466 KGLVACTGNQFCGQAIIETKARALKVTEELERLVEVPRPVRMHWTGCP-NSCGQVQVADIGFMGCMARDENGKAVEGADI 544 (587)
T ss_pred cceeECCCccccCccHHHHHHHHHHHHHHHHHhhcCCCCeEEEEECCc-ccccccccccEEEEeeeeecCCCccceEEEE
Confidence 36899965 88888886666666655542 466 7999999996 66688889999999841 12 4888
Q ss_pred eecce---------eeeecCChhHHHHHHHHHHHh
Q 004907 688 YVGKT---------VVKRGIAMEQATDALIQLIKD 713 (724)
Q Consensus 688 y~gke---------~V~~~Ipeeeavd~Li~lIk~ 713 (724)
|.|+. .+.+.||.+|+.+-+.+++.+
T Consensus 545 ~lGG~~G~~~~~g~~l~~~Vp~eel~~~v~~il~~ 579 (587)
T PLN02431 545 FVGGRVGSDSHLAEEYKKGVPCDELVPVVADILIE 579 (587)
T ss_pred EECCcCCCCCccchhhhcCCCHHHHHHHHHHHHHH
Confidence 88753 345579999999988885543
No 29
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=96.27 E-value=0.13 Score=53.96 Aligned_cols=164 Identities=16% Similarity=0.249 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhh
Q 004907 122 EEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIE 200 (724)
Q Consensus 122 ~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~ 200 (724)
+++.++...++.|++ .+++||.-|. |++..+.+|++. ++ + ||-=+-...+
T Consensus 59 ~E~~rl~~~v~~i~~-----~~~~plSIDT-~~~~v~e~al~~G~~-i-INdisg~~~~--------------------- 109 (257)
T cd00739 59 EELERVIPVLEALRG-----ELDVLISVDT-FRAEVARAALEAGAD-I-INDVSGGSDD--------------------- 109 (257)
T ss_pred HHHHHHHHHHHHHHh-----cCCCcEEEeC-CCHHHHHHHHHhCCC-E-EEeCCCCCCC---------------------
Confidence 466666666777765 4589999997 789999999987 32 2 5644433211
Q ss_pred hhHHHHHHHHHhcCCcEEEeeccCCCchHH--HhhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEE-----Eec-CChh
Q 004907 201 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRI--MSYYGDSPRGMVESAFEFARICRKLDFH--NFLFS-----MKA-SNPV 270 (724)
Q Consensus 201 e~~~~vv~~ake~g~~IRIGvN~GSL~~~i--l~~yg~t~~amVeSAle~~~i~e~~~F~--diviS-----~Ka-Snv~ 270 (724)
.++...++++|.++=+ ......++.+ ...|.+..+.+++.+.+.++.|++.|+. +|++- .|+ ..-.
T Consensus 110 ---~~~~~l~~~~~~~vV~-m~~~g~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~ 185 (257)
T cd00739 110 ---PAMLEVAAEYGAPLVL-MHMRGTPKTMQENPYYEDVVDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNL 185 (257)
T ss_pred ---hHHHHHHHHcCCCEEE-ECCCCCCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHH
Confidence 2467788899999855 4333354432 1235566789999999999999999995 77753 233 1224
Q ss_pred HHHHHHHHHHHHhhcCCCCccccccc---------cccCCCCCCchhhHHHHHH-HhhcCCCceeEE
Q 004907 271 VMVQAYRLLVAEMYVHGWDYPLHLGV---------TEAGEGEDGRMKSAIGIGT-LLQDGLGDTIRV 327 (724)
Q Consensus 271 ~~v~Ayrlla~~m~~~g~dYPLHLGV---------TEAG~~~~G~IKSaiGiG~-LL~~GIGDTIRV 327 (724)
.++++++.|.+. ++|+-+|+ ||- ...-+.-.++++.. +...| .|=|||
T Consensus 186 ~~l~~i~~l~~~------~~pil~G~SrkSfig~~~~~--~~~~r~~~t~~~~~~~~~~G-a~iiRv 243 (257)
T cd00739 186 ELLRRLDELKQL------GLPVLVGASRKSFIGALLGR--EPKDRDWGTLALSALAAANG-ADIVRV 243 (257)
T ss_pred HHHHHHHHHHhC------CCcEEEEecccHHHHHhcCC--CccccchhHHHHHHHHHHcC-CCEEEe
Confidence 567777777764 89999998 653 33445555566644 55566 478885
No 30
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=95.92 E-value=0.84 Score=52.61 Aligned_cols=210 Identities=14% Similarity=0.105 Sum_probs=134.3
Q ss_pred eEEEeeeecCCCC-CeEEeeccCCCCCCHHHHHHHHHHHHH------------------HHHHHHHHhhhcCCCcceeec
Q 004907 90 TVMVGNVAIGSEH-PIRVQTMTTNDTKDVAGTVEEVMRIAD------------------ACFEIKNSLVQKNYNIPLVAD 150 (724)
Q Consensus 90 ~V~VG~V~IGG~~-PI~VQSMt~t~T~Dv~atv~Qi~~L~~------------------a~~~I~~~L~~~~~~iPLVAD 150 (724)
...||++.||+.. |++|=..-.--+. .+..+++..++.+ .+..+.+.| +..+++||.-|
T Consensus 137 ~~~i~~~~i~~~~p~~~v~aEI~~a~~-l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l-~~~~~~pISID 214 (499)
T TIGR00284 137 DFRIGSLKIPLKPPPLRVVAEIPPTVA-EDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTA-LDALDSPVIAD 214 (499)
T ss_pred hhhccCcCCCCCCCCeEEEEEEcCCcc-hHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHH-HhhCCCcEEEe
Confidence 4788999999999 6999888753332 2778888888777 133333333 33457999999
Q ss_pred CCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchH
Q 004907 151 IHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 229 (724)
Q Consensus 151 IHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~ 229 (724)
. |++..+.+|+++ ++ =||--+-+ ++.++...|+++|.++ |.+ |-.-
T Consensus 215 T-~~~~v~eaAL~aGAd--iINsVs~~-------------------------~~d~~~~l~a~~g~~v-Vlm-~~~~--- 261 (499)
T TIGR00284 215 T-PTLDELYEALKAGAS--GVIMPDVE-------------------------NAVELASEKKLPEDAF-VVV-PGNQ--- 261 (499)
T ss_pred C-CCHHHHHHHHHcCCC--EEEECCcc-------------------------chhHHHHHHHHcCCeE-EEE-cCCC---
Confidence 7 679999999987 44 26622221 2345778899999998 554 2110
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCC--C
Q 004907 230 IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEG--E 303 (724)
Q Consensus 230 il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~--~ 303 (724)
+.-.++..+.++.|++.|+.+|++-- =.......+++|+.+.++ +++|+=+|+..-... .
T Consensus 262 ---------~~~~~~l~~~ie~a~~~Gi~~IIlDPglg~~~~~l~~sL~~l~~~r~~-----~~~Pil~GvSNvtel~da 327 (499)
T TIGR00284 262 ---------PTNYEELAKAVKKLRTSGYSKVAADPSLSPPLLGLLESIIRFRRASRL-----LNVPLVFGAANVTELVDA 327 (499)
T ss_pred ---------CchHHHHHHHHHHHHHCCCCcEEEeCCCCcchHHHHHHHHHHHHHHHh-----cCCcEEEeeccccCCCcc
Confidence 11127888889999999998877532 122345567788888777 679999998533221 1
Q ss_pred CCchhhHHHHHHHhhcCCCceeEEec----CCCCcccchHHHHHHHhhhh
Q 004907 304 DGRMKSAIGIGTLLQDGLGDTIRVSL----TEPPEKEIDPCRRLANLGMR 349 (724)
Q Consensus 304 ~G~IKSaiGiG~LL~~GIGDTIRVSL----T~dP~~EV~v~~~Ll~~~~~ 349 (724)
+-.--+++-.+.....|+ +-+||.= |--.+.|...|.++.....+
T Consensus 328 Ds~g~naal~~~a~e~Ga-~ilrvhd~S~k~r~sV~E~~~A~~m~~~~~~ 376 (499)
T TIGR00284 328 DSHGVNALLAAIALEAGA-SILYVVEDSYKSYRSTAEAAEAAKMASAARK 376 (499)
T ss_pred chhHHHHHHHHHHHHcCC-CEEEEcCCcccccccHHHHHHHHHHHHHHHh
Confidence 212234444445555676 6677643 11237788888777665433
No 31
>PRK00979 tetrahydromethanopterin S-methyltransferase subunit H; Provisional
Probab=95.68 E-value=0.8 Score=49.96 Aligned_cols=172 Identities=15% Similarity=0.182 Sum_probs=113.5
Q ss_pred CCceeEEEeeeecCCC----CCeEEeec----------cCCCCCCHHH---HHHHHHHHHH----------------HHH
Q 004907 86 RKTRTVMVGNVAIGSE----HPIRVQTM----------TTNDTKDVAG---TVEEVMRIAD----------------ACF 132 (724)
Q Consensus 86 r~Tr~V~VG~V~IGG~----~PI~VQSM----------t~t~T~Dv~a---tv~Qi~~L~~----------------a~~ 132 (724)
++.+.+.||+|+|||. -+|.+=|| ..+-.-|=++ -++|..+|.+ ++.
T Consensus 6 ~~q~v~~i~g~kiGGqpGe~ptvL~gsiFY~~h~iV~D~~~G~FDk~~Ae~Li~~~~elsd~tg~p~~~~v~~~~~eam~ 85 (308)
T PRK00979 6 KEQKVYDIGGVKIGGQPGEYPTVLIGSIFYAGHKIVSDEKKGIFDKEKAEALINRQEELSDKTGNPALLDVVGESPEAME 85 (308)
T ss_pred cccEEEEECCEEECCCCCCCCceEEEEeeecCceeeeccccCccCHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHH
Confidence 3567899999999964 44667777 2333455544 4555555555 444
Q ss_pred HHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcC------ccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 133 EIKNSLVQKNYNIPLVADIHFAPSVALRVAECFD------KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 133 ~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vd------kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
...+. +...+++||+=|.- ++....+|++.+. +.=||-=|.-..+ +.
T Consensus 86 k~I~~-v~~~~d~Pl~IDSt-~p~a~eaaLk~~~e~G~~gR~IiNSIn~e~~~-------------------------ee 138 (308)
T PRK00979 86 KYIDF-VSEITDLPFLIDST-SPEARIAAAKYATELGLADRAIYNSINPSIEE-------------------------EE 138 (308)
T ss_pred HHHHH-HHhcCCCCEEEeCC-CHHHHHHHHHHhhhcCCCCceEEEeccCCCCH-------------------------HH
Confidence 44442 44568899999985 5677667777754 4446766663211 22
Q ss_pred HHHHHhcCCcEEEe--eccCCCchHHHhhcCCCchHHHHHHHH--------HHHHHHHCCCCcEEEEEec---CChhHHH
Q 004907 207 VEKCKKYGRAVRIG--TNHGSLSDRIMSYYGDSPRGMVESAFE--------FARICRKLDFHNFLFSMKA---SNPVVMV 273 (724)
Q Consensus 207 v~~ake~g~~IRIG--vN~GSL~~~il~~yg~t~~amVeSAle--------~~~i~e~~~F~diviS~Ka---Snv~~~v 273 (724)
++.+|++|++.=|+ .|-| ++|+++=++-|.+ .++++++.|+.|+.|-.=. |....++
T Consensus 139 l~llk~yg~aavIvLa~d~~----------~pt~e~Rl~i~~~~~~~~~~gll~~a~~~GI~diliDplVlpvs~~~~tl 208 (308)
T PRK00979 139 IEALKESDIKAAIVLAFDPM----------DPSVEGRLKMLEEGGKGQDKGMLPLAEEAGIERPLVDTAVTPLPGSGAAI 208 (308)
T ss_pred HHHHHHhCCceEEEEEcCCC----------CCCHHHHHHHHHhccccchHHHHHHHHHcCCCcEEeccCCCcCccHHHHH
Confidence 57899999774444 3332 2377777777777 7888899999988774311 2267888
Q ss_pred HHHHHHHHHhhcCCCCcccccccccc
Q 004907 274 QAYRLLVAEMYVHGWDYPLHLGVTEA 299 (724)
Q Consensus 274 ~Ayrlla~~m~~~g~dYPLHLGVTEA 299 (724)
++-+++.++ +.||.=+|+.=.
T Consensus 209 ~aI~~iK~~-----~G~pt~~GlSNi 229 (308)
T PRK00979 209 RAIFAVKAK-----FGYPVGCAPHNA 229 (308)
T ss_pred HHHHHHHHH-----cCCCeEEEEeCC
Confidence 999988888 678877776543
No 32
>PRK13504 sulfite reductase subunit beta; Provisional
Probab=95.55 E-value=0.037 Score=63.79 Aligned_cols=90 Identities=21% Similarity=0.285 Sum_probs=67.5
Q ss_pred eeecCC--CCccccccHHHHHHHHHHHhc-------------------------------CCC-CcEEEEeeeeecCCCC
Q 004907 624 EYVSCP--SCGRTLFDLQEISAEIREKTS-------------------------------HLP-GVSIAIMGCIVNGPGE 669 (724)
Q Consensus 624 e~ISCP--sCGRTlfDLq~~~~~Ik~~t~-------------------------------hLk-gvkIAVMGCIVNGPGE 669 (724)
+.++|| .|+..++|.+.++.+|...+. .|| -+||||-||. |.-+.
T Consensus 149 NV~~~p~~~~~~~~~d~~~la~~l~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~LPrKfKiavsgc~-~~c~~ 227 (569)
T PRK13504 149 NVMCTPNPYESRLHAEAYEWAKKISDHLLPRTRAYAEIWLDGEKVATFSGTEEEPIYGKTYLPRKFKIAVAVPP-DNDVD 227 (569)
T ss_pred ceecCCCcccccchHHHHHHHHHHHHHhccccchhHHhhhcCcccccccccccCcccccCCCCCceEEEEEcCC-ccccC
Confidence 578898 788889999999999987542 477 7899999998 55577
Q ss_pred CCCCceeeecCC-Cc---eeEeeeccee----------------eeecCChhHHHHHHHHHH---Hhcc
Q 004907 670 MADADFGYVGGA-PG---KIDLYVGKTV----------------VKRGIAMEQATDALIQLI---KDHG 715 (724)
Q Consensus 670 madAD~GyvGg~-pG---ki~Ly~gke~----------------V~~~Ipeeeavd~Li~lI---k~~g 715 (724)
.--+|+|+++.. .| ..++|.|+-. +. -||++++++-+..++ +++|
T Consensus 228 ~~~~DiG~~~~~~~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v~~~~~ai~~~~~~~G 295 (569)
T PRK13504 228 VYANDLGFVAIAENGKLVGFNVLVGGGMGMTHGDKETYPRLADELG-YVPPEDVLDVAEAVVTTQRDYG 295 (569)
T ss_pred ceecceEEEEEecCCcEEEEEEEEEccccCCCCCCCCCCccccccC-ccCHHHHHHHHHHHHHHHHHhC
Confidence 788999999852 33 3678988732 23 489998888555444 4665
No 33
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=95.54 E-value=0.37 Score=50.60 Aligned_cols=174 Identities=18% Similarity=0.276 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhh
Q 004907 122 EEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIE 200 (724)
Q Consensus 122 ~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~ 200 (724)
+++.+|...++.+++ ..++||..|.+ ++..+.+|+++ ++ =||-.+... .
T Consensus 58 ~E~~rl~~~v~~~~~-----~~~~plsiDT~-~~~vi~~al~~G~~--iINsis~~~-~--------------------- 107 (257)
T TIGR01496 58 EELNRVVPVIKALRD-----QPDVPISVDTY-RAEVARAALEAGAD--IINDVSGGQ-D--------------------- 107 (257)
T ss_pred HHHHHHHHHHHHHHh-----cCCCeEEEeCC-CHHHHHHHHHcCCC--EEEECCCCC-C---------------------
Confidence 467777777777766 35899999986 58888888887 33 277776642 1
Q ss_pred hhHHHHHHHHHhcCCcEEEeeccCCCchHH--HhhcCCCchHHHHHHHHHHHHHHHCCC--CcEEEEE-----ecC-Chh
Q 004907 201 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRI--MSYYGDSPRGMVESAFEFARICRKLDF--HNFLFSM-----KAS-NPV 270 (724)
Q Consensus 201 e~~~~vv~~ake~g~~IRIGvN~GSL~~~i--l~~yg~t~~amVeSAle~~~i~e~~~F--~diviS~-----KaS-nv~ 270 (724)
.++.+.++++|.++=+--+.| .++.. +..|.+..+.+.+.+.+.++.|++.|+ +||+|.- |+. .-.
T Consensus 108 ---~~~~~l~~~~~~~vV~m~~~g-~p~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~iilDPg~gf~ks~~~~~ 183 (257)
T TIGR01496 108 ---PAMLEVAAEYGVPLVLMHMRG-TPRTMQENPHYEDVVEEVLRFLEARAEELVAAGVAAERIILDPGIGFGKTPEHNL 183 (257)
T ss_pred ---chhHHHHHHcCCcEEEEeCCC-CCcccccCCCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEEECCCCcccCHHHHH
Confidence 235667889999985533334 43332 123545568889999999999999999 6888752 321 124
Q ss_pred HHHHHHHHHHHHhhcCCCCccccccc---------cccCCCCCCchhhHHHH-HHHhhcCCCceeEEecCCCCcccchHH
Q 004907 271 VMVQAYRLLVAEMYVHGWDYPLHLGV---------TEAGEGEDGRMKSAIGI-GTLLQDGLGDTIRVSLTEPPEKEIDPC 340 (724)
Q Consensus 271 ~~v~Ayrlla~~m~~~g~dYPLHLGV---------TEAG~~~~G~IKSaiGi-G~LL~~GIGDTIRVSLT~dP~~EV~v~ 340 (724)
.++++++.|.+ ..+|+-+|+ ||-. ..-+.-.++++ ..+...|. |-||| ++|+-+
T Consensus 184 ~~l~~i~~l~~------~~~p~l~G~SrkSfig~v~~~~--~~~r~~~t~~~~~~a~~~Ga-~iiR~-------Hdv~~~ 247 (257)
T TIGR01496 184 ELLKHLEEFVA------LGYPLLVGASRKSFIGALLGTP--PEERLEGTLAASAYAVQKGA-DIVRV-------HDVKET 247 (257)
T ss_pred HHHHHHHHHHh------CCCcEEEEecccHHHHhhcCCC--hhhhhHHHHHHHHHHHHcCC-CEEEe-------CCHHHH
Confidence 45677777654 369999998 5532 33455444444 44566665 78885 456666
Q ss_pred HHHHH
Q 004907 341 RRLAN 345 (724)
Q Consensus 341 ~~Ll~ 345 (724)
++.++
T Consensus 248 ~~~~~ 252 (257)
T TIGR01496 248 RDALK 252 (257)
T ss_pred HHHHH
Confidence 55544
No 34
>TIGR02041 CysI sulfite reductase (NADPH) hemoprotein, beta-component. In cyanobacteria and plant species, sulfite reductase ferredoxin (EC 1.8.7.1) catalyzes the reduction of sulfite to sulfide.
Probab=95.50 E-value=0.28 Score=56.44 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=62.4
Q ss_pred CCCCccccccHHHHHHHHHHHh-----------------------------cCCC-CcEEEEeeeeecCCCCCCCCceee
Q 004907 628 CPSCGRTLFDLQEISAEIREKT-----------------------------SHLP-GVSIAIMGCIVNGPGEMADADFGY 677 (724)
Q Consensus 628 CPsCGRTlfDLq~~~~~Ik~~t-----------------------------~hLk-gvkIAVMGCIVNGPGEmadAD~Gy 677 (724)
||.||-...|.++++.++.+.+ .+|| ..||||=||.-|. ....-+|+|+
T Consensus 141 ~p~~~~~~~e~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LPrKfKi~isg~~~~~-~~~~~~DiG~ 219 (541)
T TIGR02041 141 NPYESELHQEAYEWAKKISEHLLPRTRAYHEIWLDEKKVAGTEEVEPIYGPTYLPRKFKTGVVIPPIND-VDVYANDLGF 219 (541)
T ss_pred CcccCCCHHHHHHHHHHHHHHhccCchhHHHHhhhcccccCCcccCccccccCCCCCcEEEEECCCCcc-ccccccceEE
Confidence 4568888888888888886531 2488 7899999999774 5667789999
Q ss_pred ecCCC-c---eeEeeecce----------------eeeecCChhHHHHHHHHHHH---hccc
Q 004907 678 VGGAP-G---KIDLYVGKT----------------VVKRGIAMEQATDALIQLIK---DHGR 716 (724)
Q Consensus 678 vGg~p-G---ki~Ly~gke----------------~V~~~Ipeeeavd~Li~lIk---~~g~ 716 (724)
++... | ..++|.|+- .+. -||++++++-+..+++ ++|+
T Consensus 220 ~a~~~~g~~~Gf~v~vGGg~g~~~~~~~~~p~~a~~l~-~v~~e~v~~~~~ai~~~~~~~g~ 280 (541)
T TIGR02041 220 VAIADNGKLIGFNVLIGGGLGMTHGNKATYPRLANEIG-FIPPEHTLAVAEAIVTTQRDFGN 280 (541)
T ss_pred EEEEeCCcEEEEEEEEeccccCCCCCcCCCCccccccC-CCCHHHHHHHHHHHHHHHHHhCC
Confidence 98532 2 367888763 333 5899998886665555 4553
No 35
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=95.25 E-value=0.53 Score=52.68 Aligned_cols=128 Identities=17% Similarity=0.211 Sum_probs=89.4
Q ss_pred hhcCCCcceeec----CCCCHHHHHHHhhhcCc--cccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHh
Q 004907 139 VQKNYNIPLVAD----IHFAPSVALRVAECFDK--IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 212 (724)
Q Consensus 139 ~~~~~~iPLVAD----IHF~~~lAl~a~~~vdk--iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake 212 (724)
+.+.+++|||=| --+|+.+..+|++.+.. .=||.=|..+ +|+++.+.||+
T Consensus 183 V~~av~vPLIL~gsg~~~kD~eVLeaaLe~~~G~kpLL~SAt~e~------------------------Ny~~ia~lAk~ 238 (389)
T TIGR00381 183 VLQAVDVPIVIGGSGNPEKDPLVLEKAAEVAEGERCLLASANLDL------------------------DYEKIANAAKK 238 (389)
T ss_pred HHHhCCCCEEEeCCCCCcCCHHHHHHHHHHhCCCCcEEEecCchh------------------------hHHHHHHHHHH
Confidence 455789999988 35899999999998755 4477777632 47889999999
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEEec----C---ChhHHHHHHHHHHHHh
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH--NFLFSMKA----S---NPVVMVQAYRLLVAEM 283 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~--diviS~Ka----S---nv~~~v~Ayrlla~~m 283 (724)
||.|+ ++ .+..+ +..|....+.|.++||. |||+--=. . ....++.+-|+.|=+
T Consensus 239 yg~~V--vv-~s~~D--------------in~ak~Ln~kL~~~Gv~~eDIVlDP~t~alG~Gieya~s~~erIRraALk- 300 (389)
T TIGR00381 239 YGHVV--LS-WTIMD--------------INMQKTLNRYLLKRGLMPRDIVMDPTTCALGYGIEFSITNMERIRLSGLK- 300 (389)
T ss_pred hCCeE--EE-EcCCc--------------HHHHHHHHHHHHHcCCCHHHEEEcCCCccccCCHHHHHHHHHHHHHHHhc-
Confidence 99988 44 22222 22333444557799998 99996644 2 234456667766654
Q ss_pred hcCCCCccccccccccCCCCCCchh
Q 004907 284 YVHGWDYPLHLGVTEAGEGEDGRMK 308 (724)
Q Consensus 284 ~~~g~dYPLHLGVTEAG~~~~G~IK 308 (724)
..+-..||.--++|||-.-.....+
T Consensus 301 gD~~L~~Pii~~~~~~w~~kEa~~~ 325 (389)
T TIGR00381 301 GDTDLNMPMSSGTTNAWGAREAWMV 325 (389)
T ss_pred CCcCCCCCeeccchhhhhheeeccC
Confidence 5555679999999998876666655
No 36
>TIGR02435 CobG precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively.
Probab=94.89 E-value=0.1 Score=57.31 Aligned_cols=73 Identities=15% Similarity=0.342 Sum_probs=57.1
Q ss_pred HHHHHHhhccCC----cceeecCCC---CccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCC
Q 004907 610 FNLLQGCRMRNT----KTEYVSCPS---CGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAP 682 (724)
Q Consensus 610 ~~ILQa~r~R~~----kte~ISCPs---CGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~p 682 (724)
...|+..++-.. ....++||+ |...+.|-++.+.++.+.+....++||.|-||. ||=|...-||+|++|..+
T Consensus 310 ~~~l~~~gl~~~~~~~~~~v~aC~G~~~C~~~~~~t~~~a~~l~~~~~~~~~~~i~vSGC~-n~C~~~~~adiG~~G~~~ 388 (390)
T TIGR02435 310 QRALAALGLVTSASDPRARIIACTGAPGCASALADTRADAEALAAYCEPTAPITVHLSGCA-KGCAHPGPAAITLVAAGA 388 (390)
T ss_pred HHHHHHCCCCcCCCCCeeeEEECCCccccccchhhHHHHHHHHHHHhcccCCcEEEEeCCc-ccccCCCCCCEEEEecCC
Confidence 444555554321 235789975 999999999999999988876556999999995 888999999999999754
Q ss_pred c
Q 004907 683 G 683 (724)
Q Consensus 683 G 683 (724)
|
T Consensus 389 g 389 (390)
T TIGR02435 389 G 389 (390)
T ss_pred C
Confidence 4
No 37
>cd00423 Pterin_binding Pterin binding enzymes. This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=94.88 E-value=1.3 Score=46.19 Aligned_cols=178 Identities=21% Similarity=0.234 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhh
Q 004907 122 EEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEE 201 (724)
Q Consensus 122 ~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e 201 (724)
+++.++...++.|++ .+++||.-|- |++..+.+|++....+ ||-=+-...+
T Consensus 59 ~E~~rl~~~v~~l~~-----~~~~piSIDT-~~~~v~~aaL~~g~~i-INdis~~~~~---------------------- 109 (258)
T cd00423 59 EELERVIPVLRALAG-----EPDVPISVDT-FNAEVAEAALKAGADI-INDVSGGRGD---------------------- 109 (258)
T ss_pred HHHHHHHHHHHHHHh-----cCCCeEEEeC-CcHHHHHHHHHhCCCE-EEeCCCCCCC----------------------
Confidence 466676667777765 4589999986 7899999999975222 6654443211
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCch--HHHhhcCCCchHHHHHHHHHHHHHHHCCC--CcEEE-----EEecCChhHH
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSD--RIMSYYGDSPRGMVESAFEFARICRKLDF--HNFLF-----SMKASNPVVM 272 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~--~il~~yg~t~~amVeSAle~~~i~e~~~F--~divi-----S~KaSnv~~~ 272 (724)
.++++.++++|.|+=+-.+.|. .. .-...|.++.+.+.+.+.+.++.|.+.|+ ++|++ -.| +...-
T Consensus 110 --~~~~~l~~~~~~~vV~m~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Gi~~~~IilDPg~g~~k--~~~~~ 184 (258)
T cd00423 110 --PEMAPLAAEYGAPVVLMHMDGT-PQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPPEDIILDPGIGFGK--TEEHN 184 (258)
T ss_pred --hHHHHHHHHcCCCEEEECcCCC-CcccccCCCcchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCccC--CHHHH
Confidence 3467889999999855554442 11 11234667789999999999999999995 68887 345 33333
Q ss_pred HHHHHHHHHHhhcCCCCccccccccccCCCC-------CCch-hhHHHHHHHhhcCCCceeEEecCCCCcccchHH
Q 004907 273 VQAYRLLVAEMYVHGWDYPLHLGVTEAGEGE-------DGRM-KSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPC 340 (724)
Q Consensus 273 v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~-------~G~I-KSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~ 340 (724)
....+.+..- .+. ..||+-+|+.=-..+. ..|. -+++........| -|-+||- |+.|..-+
T Consensus 185 ~~~l~~i~~~-~~~-~g~Pil~G~Snksf~~~~~~~~~~~R~~~t~a~~~~a~~~G-~~~~rvh----~v~~~~~a 253 (258)
T cd00423 185 LELLRRLDAF-REL-PGLPLLLGVSRKSFLGDLLSVGPKDRLAGTAAFLAAAILNG-ADIVRVH----DVKELRDA 253 (258)
T ss_pred HHHHHHHHHH-Hhc-CCCcEEEEeccchhhcccCCCChHHhhHHHHHHHHHHHHcC-CCEEEEC----CCHHHHHH
Confidence 3344444322 111 3799999974332222 2222 2555566677788 6777763 35554443
No 38
>PLN02431 ferredoxin--nitrite reductase
Probab=94.38 E-value=0.26 Score=57.52 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=71.1
Q ss_pred HHHHHhhccCCcc------eeecCCCCcc---ccccHHHHHHHHHHHh----------cCCC-CcEEEEeeeeecCCCCC
Q 004907 611 NLLQGCRMRNTKT------EYVSCPSCGR---TLFDLQEISAEIREKT----------SHLP-GVSIAIMGCIVNGPGEM 670 (724)
Q Consensus 611 ~ILQa~r~R~~kt------e~ISCPsCGR---TlfDLq~~~~~Ik~~t----------~hLk-gvkIAVMGCIVNGPGEm 670 (724)
.-|+++++-...+ +.+.||.-|. -++|...++.++.+.+ .+|| -.||||-||.-|. ...
T Consensus 192 ~~L~~vGL~t~~a~gd~vRNI~~~P~aG~~~~e~~Dt~pla~~l~~~~~~~~~~~~~~~~LPrKfkiavsG~~~~~-~~~ 270 (587)
T PLN02431 192 KGLEEVGLTSLQSGMDNVRNPVGNPLAGIDPHEIVDTRPYTNLLSDYITNNGRGNPEITNLPRKWNVCVVGSHDLF-EHP 270 (587)
T ss_pred HHHHHcCCCchhccCCCCCCcccCCCCCCCccccccHHHHHHHHHHHhhhcccCCcccccCCCCeEEEEecCcccc-ccc
Confidence 3456666654333 4889998655 5789999999998875 3688 6899999998554 444
Q ss_pred CCCceeeecCC-Cc--eeEeeecceee----------eecCChhHHHHHHHHHH---Hhcc
Q 004907 671 ADADFGYVGGA-PG--KIDLYVGKTVV----------KRGIAMEQATDALIQLI---KDHG 715 (724)
Q Consensus 671 adAD~GyvGg~-pG--ki~Ly~gke~V----------~~~Ipeeeavd~Li~lI---k~~g 715 (724)
.-.|+|+++.. .| .+++|+|+..- ..-|+++++++-+..++ +++|
T Consensus 271 ~~nDigf~~~~~~g~~Gf~v~vGG~~g~~~~~~~~~l~~~v~~e~v~~v~~av~~~f~d~G 331 (587)
T PLN02431 271 HINDLAYMPATKDGRFGFNLLVGGFFSPKRCAEAIPLDAWVPADDVVPLCKAILEAFRDLG 331 (587)
T ss_pred cccceEEEEEEECCceEEEEEEeCCcCCCCccccchhhcccCHHHHHHHHHHHHHHHHHhC
Confidence 56899999853 22 47899987421 11278888887555444 4555
No 39
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=94.31 E-value=0.77 Score=50.33 Aligned_cols=56 Identities=23% Similarity=0.291 Sum_probs=41.9
Q ss_pred eeecCC---CCccccccHHHHHHHHH----HHhc--CCC-CcEEEEeeeeecCCCCCCCCceeeecC
Q 004907 624 EYVSCP---SCGRTLFDLQEISAEIR----EKTS--HLP-GVSIAIMGCIVNGPGEMADADFGYVGG 680 (724)
Q Consensus 624 e~ISCP---sCGRTlfDLq~~~~~Ik----~~t~--hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg 680 (724)
+.++|| +|..-++|-++++..+. ++.. .|| .+||+|-||..|-- ...-+|+|++|.
T Consensus 103 ni~aC~G~~~C~~a~~dt~~l~~~l~~~l~~~~~~~~lP~KfKI~vSGC~~~C~-~~~~~Dig~~g~ 168 (341)
T TIGR02066 103 NIVHTQGWLHCHIPAIDASGIVKAVMDELYEYFTDHKLPAMVRISLSCCANMCG-GVHASDIAIVGI 168 (341)
T ss_pred ccccCcCCCCCCcchhchHHHHHHHHHHHHHHHhcccccccceecccccccccc-chhhcccccccc
Confidence 578999 68888999988775444 4432 367 78999999996653 345799999874
No 40
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=93.87 E-value=0.48 Score=50.69 Aligned_cols=57 Identities=25% Similarity=0.424 Sum_probs=48.2
Q ss_pred eeecCCC---CccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCC
Q 004907 624 EYVSCPS---CGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGA 681 (724)
Q Consensus 624 e~ISCPs---CGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~ 681 (724)
+.++||+ |.--.+|.+++++++.+.+...| .+||+|.||. |+.+...-+|+|+.|..
T Consensus 102 ~i~aC~g~~~C~~~~~dt~~l~~~l~~~~~~~~~k~ki~iSGCp-~~C~~~~~~DiG~~g~~ 162 (314)
T TIGR02912 102 NITACIGNRVCPFANYDTTKFAKRIEKAVFPNDYHVKIALTGCP-NDCAKARMHDFGIIGMT 162 (314)
T ss_pred ceeeCCCCCCCCCCcccHHHHHHHHHHHhhcCCceEEEEEeCCC-chhhHHHHhhccccccc
Confidence 4789996 77778999999999999886556 7999999997 67777778999999853
No 41
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=93.75 E-value=2 Score=45.49 Aligned_cols=139 Identities=13% Similarity=0.120 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCcc-ccCCCCCcchhhhhhccccchHHHHHHhhhhhh
Q 004907 123 EVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEE 201 (724)
Q Consensus 123 Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdki-RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e 201 (724)
+..++...++.|++ .+++||.-|. +++..+.+|++++... =||-=|-.. +
T Consensus 53 E~~r~~~~v~~l~~-----~~~~plsIDT-~~~~v~eaaL~~~~G~~iINsIs~~~-----------------------~ 103 (261)
T PRK07535 53 EPETMEWLVETVQE-----VVDVPLCIDS-PNPAAIEAGLKVAKGPPLINSVSAEG-----------------------E 103 (261)
T ss_pred HHHHHHHHHHHHHH-----hCCCCEEEeC-CCHHHHHHHHHhCCCCCEEEeCCCCC-----------------------c
Confidence 44555556666655 4689999997 7799999999975432 266544321 1
Q ss_pred hHHHHHHHHHhcCCcEEEeecc-CCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCC--CcEEEE-----Eec-C-ChhH
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNH-GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF--HNFLFS-----MKA-S-NPVV 271 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~-GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F--~diviS-----~Ka-S-nv~~ 271 (724)
++.++++.++++|.|+=+=.++ -..+ .|++..++.+.+.++.|++.|+ ++|+|- +.. . ....
T Consensus 104 ~~~~~~~l~~~~g~~vv~m~~~~~g~P--------~t~~~~~~~l~~~v~~a~~~GI~~~~IilDPgi~~~~~~~~~~~~ 175 (261)
T PRK07535 104 KLEVVLPLVKKYNAPVVALTMDDTGIP--------KDAEDRLAVAKELVEKADEYGIPPEDIYIDPLVLPLSAAQDAGPE 175 (261)
T ss_pred cCHHHHHHHHHhCCCEEEEecCCCCCC--------CCHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCcccCChHHHHH
Confidence 2456788899999998443332 1111 2456678889999999999999 688874 222 1 2456
Q ss_pred HHHHHHHHHHHhhcCCC-CccccccccccCCCC
Q 004907 272 MVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGE 303 (724)
Q Consensus 272 ~v~Ayrlla~~m~~~g~-dYPLHLGVTEAG~~~ 303 (724)
++++++.|.+. + .||+=+|+.=--.|.
T Consensus 176 ~l~~i~~l~~~-----~pg~p~l~G~Sn~Sfgl 203 (261)
T PRK07535 176 VLETIRRIKEL-----YPKVHTTCGLSNISFGL 203 (261)
T ss_pred HHHHHHHHHHh-----CCCCCEEEEeCCCccCC
Confidence 79999999988 6 699999987665554
No 42
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=93.06 E-value=1.8 Score=47.93 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=102.1
Q ss_pred CCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------------------HHHHHHHHhh
Q 004907 86 RKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------------------ACFEIKNSLV 139 (724)
Q Consensus 86 r~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------------------a~~~I~~~L~ 139 (724)
..+..|.+|++.|||++|..|-=- ..-.+-+.+.+...+|.+ .++.+++ .
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~iaGp--c~iE~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~--~ 177 (360)
T PRK12595 102 PEDTIVDVKGEVIGDGNQSFIFGP--CSVESYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQ--V 177 (360)
T ss_pred CCCCEEEECCEEecCCCeeeEEec--ccccCHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHH--H
Confidence 446779999999999999887522 122233444444444443 4555555 4
Q ss_pred hcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 140 QKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 140 ~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
++...+|+++++|--..+ ..+.+.+|-+-|--+|+-+ .++++++-..|.||=+
T Consensus 178 ~~~~Gl~~~t~v~d~~~~-~~l~~~vd~lkI~s~~~~n--------------------------~~LL~~~a~~gkPVil 230 (360)
T PRK12595 178 ADEYGLAVISEIVNPADV-EVALDYVDVIQIGARNMQN--------------------------FELLKAAGRVNKPVLL 230 (360)
T ss_pred HHHcCCCEEEeeCCHHHH-HHHHHhCCeEEECcccccC--------------------------HHHHHHHHccCCcEEE
Confidence 567889999999865444 4556679999999999855 3588888899999944
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE--EecC-----ChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS--MKAS-----NPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS--~KaS-----nv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
-..-. .|++ -++.|.+++ .+.|-++|++- +=++ .-..-..+-..|.++ +++|.
T Consensus 231 k~G~~-----------~t~~-e~~~Ave~i---~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~-----~~~PV 290 (360)
T PRK12595 231 KRGLS-----------ATIE-EFIYAAEYI---MSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQE-----THLPV 290 (360)
T ss_pred eCCCC-----------CCHH-HHHHHHHHH---HHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHH-----hCCCE
Confidence 33210 1332 344455544 56777777765 2221 111235566666666 67785
Q ss_pred cccccccC
Q 004907 293 HLGVTEAG 300 (724)
Q Consensus 293 HLGVTEAG 300 (724)
=++.|-++
T Consensus 291 ~~d~~Hs~ 298 (360)
T PRK12595 291 MVDVTHST 298 (360)
T ss_pred EEeCCCCC
Confidence 44446663
No 43
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=93.00 E-value=5.2 Score=42.36 Aligned_cols=149 Identities=17% Similarity=0.222 Sum_probs=96.3
Q ss_pred ceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------------------HHHHHHHHhhhc
Q 004907 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------------------ACFEIKNSLVQK 141 (724)
Q Consensus 88 Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------------------a~~~I~~~L~~~ 141 (724)
..+|.+|++.||+++++.|-=.+. -.|.+.+.+...+|.+ .++.+++ .++
T Consensus 11 ~s~i~~~~~~~g~~~~~~IAGpc~--ie~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g~~gl~~l~~--~~~ 86 (260)
T TIGR01361 11 KTVVDVGGVKIGEGSPIVIAGPCS--VESEEQIMETARFVKEAGAKILRGGAFKPRTSPYSFQGLGEEGLKLLRR--AAD 86 (260)
T ss_pred CCEEEECCEEEcCCcEEEEEeCCc--cCCHHHHHHHHHHHHHHHHHhccCceecCCCCCccccccHHHHHHHHHH--HHH
Confidence 456999999999999887655333 3455666655555553 5555665 456
Q ss_pred CCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 142 NYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 142 ~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
...+|+++++|--..+.+. .+.+|-+-|--+++-+ .++++++...|.||=+=.
T Consensus 87 ~~Gl~~~t~~~d~~~~~~l-~~~~d~lkI~s~~~~n--------------------------~~LL~~~a~~gkPVilk~ 139 (260)
T TIGR01361 87 EHGLPVVTEVMDPRDVEIV-AEYADILQIGARNMQN--------------------------FELLKEVGKQGKPVLLKR 139 (260)
T ss_pred HhCCCEEEeeCChhhHHHH-HhhCCEEEECcccccC--------------------------HHHHHHHhcCCCcEEEeC
Confidence 7889999999876665544 4668888888888855 348888889999994333
Q ss_pred ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEe-cCC------hhHHHHHHHHHHHH
Q 004907 222 NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK-ASN------PVVMVQAYRLLVAE 282 (724)
Q Consensus 222 N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K-aSn------v~~~v~Ayrlla~~ 282 (724)
.-. .+++ -++.|. +.+.+.|-++|++--= .|. ...-..+-..|.++
T Consensus 140 G~~-----------~t~~-e~~~Av---e~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~ 192 (260)
T TIGR01361 140 GMG-----------NTIE-EWLYAA---EYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKE 192 (260)
T ss_pred CCC-----------CCHH-HHHHHH---HHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHh
Confidence 211 1332 334444 4456788888888322 332 23445555666655
No 44
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=92.88 E-value=1.8 Score=47.43 Aligned_cols=122 Identities=16% Similarity=0.191 Sum_probs=88.5
Q ss_pred HHHHHHHhhhcCCCcceeecCCC----CHHHHHHHhhhcCccc--cCCCCCcchhhhhhccccchHHHHHHhhhhhhhHH
Q 004907 131 CFEIKNSLVQKNYNIPLVADIHF----APSVALRVAECFDKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 204 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVADIHF----~~~lAl~a~~~vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~ 204 (724)
+....+. +...+++||+-|.=+ |+.+..+|++.+..=| ||+=|. ++++
T Consensus 112 ~~~~Vk~-V~eavd~PL~Id~s~n~~kD~evleaale~~~g~~pLInSat~-------------------------en~~ 165 (319)
T PRK04452 112 AAKTVEE-VLQAVDVPLIIGGSGNPEKDAEVLEKVAEAAEGERCLLGSAEE-------------------------DNYK 165 (319)
T ss_pred HHHHHHH-HHHhCCCCEEEecCCCCCCCHHHHHHHHHHhCCCCCEEEECCH-------------------------HHHH
Confidence 3334333 345689999999999 7999889999866433 555542 2478
Q ss_pred HHHHHHHhcCCcEEEeeccCCCc-hHHHhhcCCCchHHHHHHHHHHHHHHHCCC--CcEEEEEecC-------ChhHHHH
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLS-DRIMSYYGDSPRGMVESAFEFARICRKLDF--HNFLFSMKAS-------NPVVMVQ 274 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~-~~il~~yg~t~~amVeSAle~~~i~e~~~F--~diviS~KaS-------nv~~~v~ 274 (724)
++...|++||.++ .+ ++ ++ ++-|.+-.+.+.++|+ +||+|--=.. ....+++
T Consensus 166 ~i~~lA~~y~~~V--va----~s~~D------------ln~ak~L~~~l~~~Gi~~edIviDP~~~~lg~g~e~~~~~~e 227 (319)
T PRK04452 166 KIAAAAMAYGHAV--IA----WSPLD------------INLAKQLNILLTELGVPRERIVMDPTTGALGYGIEYSYSVME 227 (319)
T ss_pred HHHHHHHHhCCeE--EE----EcHHH------------HHHHHHHHHHHHHcCCCHHHEEEeCCcccccCCHHHHHHHHH
Confidence 8999999999987 33 22 22 7788889999999999 9999855443 3345567
Q ss_pred HHHHHHHHhhcCCCCcccccccc
Q 004907 275 AYRLLVAEMYVHGWDYPLHLGVT 297 (724)
Q Consensus 275 Ayrlla~~m~~~g~dYPLHLGVT 297 (724)
.-|++|=+ ..+-..||.=-+++
T Consensus 228 ~IR~aAl~-~d~~l~~P~i~~~~ 249 (319)
T PRK04452 228 RIRLAALK-GDEMLQMPMISGVG 249 (319)
T ss_pred HHHHHHhc-CCCcCCCCeEecch
Confidence 77887765 55567899988888
No 45
>PRK09567 nirA ferredoxin-nitrite reductase; Reviewed
Probab=91.40 E-value=0.61 Score=54.47 Aligned_cols=91 Identities=20% Similarity=0.238 Sum_probs=63.3
Q ss_pred eeecCCCCcc---ccccHHHHHHHHHHHh------cCCC-CcEEEEeeeeecCCCCCCCCceeeecCC--Cc-------e
Q 004907 624 EYVSCPSCGR---TLFDLQEISAEIREKT------SHLP-GVSIAIMGCIVNGPGEMADADFGYVGGA--PG-------K 684 (724)
Q Consensus 624 e~ISCPsCGR---TlfDLq~~~~~Ik~~t------~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~--pG-------k 684 (724)
+.++||..|. .+||.+.+++++.+.+ .+|| -.||||-||-.|-+ ...-.|+|++... .| .
T Consensus 190 NV~~~P~ag~~~~e~~D~~~~a~~l~~~~~~~~~~~~LPrKfkiaisg~~~~~~-~~~~nDigf~a~~~~~g~~~~~g~g 268 (593)
T PRK09567 190 NVTGSPTAGIDPQELLDTRPYAREWHHHILNDRSLYGLPRKFNVAFDGGGRIAT-LEDTNDIGFQAVRVLEGAGVAPGVY 268 (593)
T ss_pred CcCCCCCCCCChhhccchHHHHHHHHHHHhCCchhcCCCCCeEEEEECCCcccc-cccccceeeEEEEecCCccccccce
Confidence 6789997655 5799999999998775 3588 78999999976544 4446899998631 12 3
Q ss_pred eEeeecce--------eeeecCChhHHHHHHHHHH---Hhcc
Q 004907 685 IDLYVGKT--------VVKRGIAMEQATDALIQLI---KDHG 715 (724)
Q Consensus 685 i~Ly~gke--------~V~~~Ipeeeavd~Li~lI---k~~g 715 (724)
+.+|.|+- .+..-|+.|++++-...++ +++|
T Consensus 269 f~v~vGG~~g~~~~a~~~~~~v~~e~v~~~~~Ai~~~f~d~G 310 (593)
T PRK09567 269 FRLVLGGITGHKDFARDTGVLLRPEEATAVADAIVRVFIENG 310 (593)
T ss_pred EEEEEecccCCCcchhhhhccCCHHHHHHHHHHHHHHHHHhC
Confidence 77887752 2232378888887554444 5666
No 46
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=89.40 E-value=24 Score=36.51 Aligned_cols=182 Identities=13% Similarity=0.127 Sum_probs=97.1
Q ss_pred HHHHHHHhhhcCCCcceee-------cC-CCCH----------HHHHHHhh-h-cCccccCCCCCcchhhhhhccccchH
Q 004907 131 CFEIKNSLVQKNYNIPLVA-------DI-HFAP----------SVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDD 190 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVA-------DI-HF~~----------~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytde 190 (724)
+..+++.|.+.+..|.-++ .+ +.++ +-+++.++ . +..|+++++.+.. ++
T Consensus 54 ~~~~~~~l~~~gl~i~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~-----------~~ 122 (279)
T TIGR00542 54 RLALVNAIIETGVRIPSMCLSAHRRFPLGSKDKAVRQQGLEIMEKAIQLARDLGIRTIQLAGYDVYY-----------EE 122 (279)
T ss_pred HHHHHHHHHHcCCCceeeecCCCccCcCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEecCccccc-----------Cc
Confidence 4567777777777766443 22 2233 22333333 3 7888886543321 11
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 004907 191 EYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 270 (724)
Q Consensus 191 ey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 270 (724)
...+.++++.+.++++++.|+++|+.|-+= |+++ ..+.+.-+.+++++..|-.++.+-+=..+..
T Consensus 123 ~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE-~~~~--------------~~~~t~~~~~~li~~v~~~~v~~~~D~~h~~ 187 (279)
T TIGR00542 123 HDEETRRRFREGLKEAVELAARAQVTLAVE-IMDT--------------PFMSSISKWLKWDHYLNSPWFTLYPDIGNLS 187 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEEEe-eCCC--------------chhcCHHHHHHHHHHcCCCceEEEeCcChhh
Confidence 235567888889999999999999866332 3321 1233334556677888888888877554432
Q ss_pred H----HHHHHHHHHHHhhcCCCCcccccc-----ccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC----CCcccc
Q 004907 271 V----MVQAYRLLVAEMYVHGWDYPLHLG-----VTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE----PPEKEI 337 (724)
Q Consensus 271 ~----~v~Ayrlla~~m~~~g~dYPLHLG-----VTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~----dP~~EV 337 (724)
. ..+..++...++ +=+|+. +.+=-+.-+|.|.=.-=+..|-..|---.+-+-... +|.+++
T Consensus 188 ~~~~~~~~~i~~~~~~i------~~vHikD~~~~~~~~~p~G~G~id~~~~~~aL~~~gy~G~l~iE~~~~~~~~~~~~~ 261 (279)
T TIGR00542 188 AWDNDVQMELQLGIDKI------VAIHLKDTKPGQFKDVPFGEGCVDFERCFKTLKQLNYRGPFLIEMWSEKAEEPVAEI 261 (279)
T ss_pred hccCCHHHHHHHhhhhE------EEEEeCCCCCCccCCcCCCCCccCHHHHHHHHHHhCCceeEEEEecCCcccChHHHH
Confidence 1 122223333321 122331 111112244666655566677777765566554433 344444
Q ss_pred hHHHHHH
Q 004907 338 DPCRRLA 344 (724)
Q Consensus 338 ~v~~~Ll 344 (724)
+.+.+-+
T Consensus 262 ~~~~~~l 268 (279)
T TIGR00542 262 IQARDWI 268 (279)
T ss_pred HHHHHHH
Confidence 4444433
No 47
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=88.77 E-value=21 Score=38.68 Aligned_cols=164 Identities=16% Similarity=0.224 Sum_probs=94.3
Q ss_pred CCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 142 NYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 142 ~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
..++||--|. |++..|.+|+++ ++= ||==. |..+ ..+.+.|+++|.++=+-
T Consensus 88 ~~~~~ISIDT-~~~~va~~AL~~Gadi--INDI~-g~~d------------------------~~~~~~~a~~~~~vVlm 139 (282)
T PRK11613 88 RFEVWISVDT-SKPEVIRESAKAGAHI--INDIR-SLSE------------------------PGALEAAAETGLPVCLM 139 (282)
T ss_pred cCCCeEEEEC-CCHHHHHHHHHcCCCE--EEECC-CCCC------------------------HHHHHHHHHcCCCEEEE
Confidence 4579999997 779999999987 553 33110 1101 12445578899998665
Q ss_pred eccCCCchHHH--hhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEEe---cCChhHHHHHHHHHHHHhhc-CCCCccc
Q 004907 221 TNHGSLSDRIM--SYYGDSPRGMVESAFEFARICRKLDFH--NFLFSMK---ASNPVVMVQAYRLLVAEMYV-HGWDYPL 292 (724)
Q Consensus 221 vN~GSL~~~il--~~yg~t~~amVeSAle~~~i~e~~~F~--diviS~K---aSnv~~~v~Ayrlla~~m~~-~g~dYPL 292 (724)
-+.| .++.+- ..|.+--+.+.....+.++.|++.|+. +|++--= +.+.. +.+++|..- .+ .-..||+
T Consensus 140 h~~g-~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~---~n~~ll~~l-~~l~~lg~Pi 214 (282)
T PRK11613 140 HMQG-NPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLS---HNYQLLARL-AEFHHFNLPL 214 (282)
T ss_pred cCCC-CCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHH---HHHHHHHHH-HHHHhCCCCE
Confidence 4444 333321 124444456667888889999999996 8886421 11222 334433321 11 1157999
Q ss_pred ccccc------c-cCCCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHH
Q 004907 293 HLGVT------E-AGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLAN 345 (724)
Q Consensus 293 HLGVT------E-AG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~ 345 (724)
=+|+. + .|....-|+-.+++.-.++...=.|-||| ..|..+++.++
T Consensus 215 lvg~SRKsfig~~~~~~~~~r~~~T~a~~~~a~~~ga~iiRv-------HdV~~~~~a~~ 267 (282)
T PRK11613 215 LVGMSRKSMIGQLLNVGPSERLSGSLACAVIAAMQGAQIIRV-------HDVKETVEAMR 267 (282)
T ss_pred EEEecccHHHHhhcCCChhhhhHHHHHHHHHHHHCCCCEEEc-------CCHHHHHHHHH
Confidence 99965 1 12234456666565555444433477774 45666555554
No 48
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=88.49 E-value=11 Score=40.16 Aligned_cols=133 Identities=19% Similarity=0.256 Sum_probs=89.9
Q ss_pred CCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------------------HHHHHHHHhh
Q 004907 86 RKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------------------ACFEIKNSLV 139 (724)
Q Consensus 86 r~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------------------a~~~I~~~L~ 139 (724)
.....|.+|++.||++..++|-=.+.-. |.+++.+-.++|.+ .++.+++ .
T Consensus 11 ~~~~~~~~~~~~~g~~~~~~iaGPCsie--~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~--~ 86 (266)
T PRK13398 11 GEKTIVKVGDVVIGGEEKIIIAGPCAVE--SEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKE--V 86 (266)
T ss_pred CCCcEEEECCEEEcCCCEEEEEeCCcCC--CHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHH--H
Confidence 3456799999999999767777666654 56777777777776 5556666 3
Q ss_pred hcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 140 QKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 140 ~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
++...+|+++++|--..+ -.+.+.++-+-|=-+|+-+ .++++++-..|.||
T Consensus 87 ~~~~Gl~~~te~~d~~~~-~~l~~~vd~~kIga~~~~n--------------------------~~LL~~~a~~gkPV-- 137 (266)
T PRK13398 87 GDKYNLPVVTEVMDTRDV-EEVADYADMLQIGSRNMQN--------------------------FELLKEVGKTKKPI-- 137 (266)
T ss_pred HHHcCCCEEEeeCChhhH-HHHHHhCCEEEECcccccC--------------------------HHHHHHHhcCCCcE--
Confidence 456889999999865444 4445678888888888754 34778888899999
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
++-.|-- .+++.+..+ ++.++..|=.++.+-.
T Consensus 138 ~lk~G~~---------~s~~e~~~A----~e~i~~~Gn~~i~L~~ 169 (266)
T PRK13398 138 LLKRGMS---------ATLEEWLYA----AEYIMSEGNENVVLCE 169 (266)
T ss_pred EEeCCCC---------CCHHHHHHH----HHHHHhcCCCeEEEEE
Confidence 4433310 133333333 3556777888877743
No 49
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=87.83 E-value=20 Score=45.79 Aligned_cols=194 Identities=19% Similarity=0.211 Sum_probs=131.0
Q ss_pred CCHHHHHHHHHHHHH-------------------HHHHHHHHhhhc--CCCcceeecCCCCHHHHHHHhhhc-CccccCC
Q 004907 115 KDVAGTVEEVMRIAD-------------------ACFEIKNSLVQK--NYNIPLVADIHFAPSVALRVAECF-DKIRVNP 172 (724)
Q Consensus 115 ~Dv~atv~Qi~~L~~-------------------a~~~I~~~L~~~--~~~iPLVADIHF~~~lAl~a~~~v-dkiRINP 172 (724)
.|.+..+++.+++.+ .+..+...|.+. -+++||.-|. +++.++.+|++.+ -+==||=
T Consensus 365 ~d~~~a~~~A~~qve~GA~iIDVn~~~~~vd~~eem~rvv~~i~~~~~~~~vPlsIDS-~~~~v~eaaLk~~~G~~IINs 443 (1178)
T TIGR02082 365 EDYDEALDIAKQQVENGAQILDINVDYGMLDGVAAMKRFLNLLASEPDISTVPLMLDS-SEWAVLEAGLKCIQGKCIVNS 443 (1178)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCCCCeEEEeC-CcHHHHHHHHHhcCCCCEEEe
Confidence 788899999888877 444555544332 2489999997 7799999999874 3333776
Q ss_pred CCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcC--CCchHHHHHHHHHHH
Q 004907 173 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFAR 250 (724)
Q Consensus 173 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amVeSAle~~~ 250 (724)
=|-.+++ ++|.++...|+++|.++=+... ++ -| .|.+.-++-|.+.++
T Consensus 444 Is~~~g~---------------------~~~~~~~~l~~~yga~vV~m~~----de-----~G~p~t~e~r~~i~~~~~~ 493 (1178)
T TIGR02082 444 ISLKDGE---------------------ERFIETAKLIKEYGAAVVVMAF----DE-----EGQARTADRKIEICKRAYN 493 (1178)
T ss_pred CCCCCCC---------------------ccHHHHHHHHHHhCCCEEEEec----CC-----CCCCCCHHHHHHHHHHHHH
Confidence 6663211 2467889999999999966552 21 14 366777889999999
Q ss_pred HHHH-CCC--CcEEEEE-----ecCC------hhHHHHHHHHHHHHhhcCCC-CccccccccccCCCCCC------chhh
Q 004907 251 ICRK-LDF--HNFLFSM-----KASN------PVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGEDG------RMKS 309 (724)
Q Consensus 251 i~e~-~~F--~diviS~-----KaSn------v~~~v~Ayrlla~~m~~~g~-dYPLHLGVTEAG~~~~G------~IKS 309 (724)
.|.+ .|| +||+|-- -+.. ...++++.|.+.++ + .+|.-+|+.==-.|..| .+.|
T Consensus 494 ~~~~~~Gi~~edIi~DP~i~~v~~g~~e~n~~~~~~le~i~~ik~~-----~pg~~~~~GlSN~SFglp~~~~~R~~ln~ 568 (1178)
T TIGR02082 494 ILTEKVGFPPEDIIFDPNILTIATGIEEHRRYAINFIEAIRWIKEE-----LPDAKISGGVSNVSFSFRGNPAAREAMHS 568 (1178)
T ss_pred HHHHHcCCCHHHEEEeCCccccccCchHHHHHHHHHHHHHHHHHHh-----CCCCceEEEecccccCCCCCchHHHHHHH
Confidence 9987 999 6887732 2222 45788888888888 6 79999999988888865 3344
Q ss_pred H---HHHHHHhhcCCCceeEEecCCC-CcccchHHHHHH
Q 004907 310 A---IGIGTLLQDGLGDTIRVSLTEP-PEKEIDPCRRLA 344 (724)
Q Consensus 310 a---iGiG~LL~~GIGDTIRVSLT~d-P~~EV~v~~~Ll 344 (724)
+ .+|..=|..+|=|.--..+-++ |.++..+|..++
T Consensus 569 ~FL~~a~~~Gld~aIvnp~~~~~~~~i~~~~~~~~~~~l 607 (1178)
T TIGR02082 569 VFLYHAIRAGMDMGIVNAGKILPYDDIDPELRQVVEDLI 607 (1178)
T ss_pred HHHHHHHHcCCchhhcChhhhhHHHhhCHHHHHHHHHHH
Confidence 2 3455555566665544443222 334455566554
No 50
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=86.79 E-value=0.85 Score=49.90 Aligned_cols=56 Identities=32% Similarity=0.617 Sum_probs=45.9
Q ss_pred eeecCCC---CccccccHHHHHHHHHHHhc--CCC-CcEEEEeeeeecCCCCCCCCceeeecC
Q 004907 624 EYVSCPS---CGRTLFDLQEISAEIREKTS--HLP-GVSIAIMGCIVNGPGEMADADFGYVGG 680 (724)
Q Consensus 624 e~ISCPs---CGRTlfDLq~~~~~Ik~~t~--hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg 680 (724)
+..|||+ |.--++|-.+++++|.+... -+| -+||+|-||- |.=+-....|||++|-
T Consensus 103 ~i~aC~G~~~C~~a~~Dt~~la~~l~e~f~~~~~P~KfKI~vsGCP-n~C~r~~~~DigivGv 164 (317)
T COG2221 103 AIVACPGPRTCETALYDTTELARRLEEEFLEVPVPYKFKIAVSGCP-NDCTRPQAHDIGIVGV 164 (317)
T ss_pred hhhcCcCcccccccccChHHHHHHHHHHhhcCCCCceEEEEeecCC-cccccccccceeEEEe
Confidence 6789986 99999999999999999986 455 6899999996 4444444559999996
No 51
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=85.36 E-value=43 Score=37.16 Aligned_cols=132 Identities=17% Similarity=0.251 Sum_probs=85.0
Q ss_pred CceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------------------HHHHHHHHhhh
Q 004907 87 KTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------------------ACFEIKNSLVQ 140 (724)
Q Consensus 87 ~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------------------a~~~I~~~L~~ 140 (724)
....|.||++.|||++++.|-=-+.- .+-+..++...+|.+ .++.+++ .+
T Consensus 78 ~~t~v~~~~~~ig~~~~~~IAGPCsi--Es~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~--~~ 153 (335)
T PRK08673 78 EPTVVKVGDVEIGGGKPVVIAGPCSV--ESEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAE--AR 153 (335)
T ss_pred CCCEEEECCEEECCCceEEEEecCcc--CCHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHH--HH
Confidence 34568999999999988776543433 345555555555544 4555554 35
Q ss_pred cCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 141 KNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 141 ~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+...+|++.++|--..+- .+.+.+|-+-|--.|+-+ .++++++-+.|.|| .
T Consensus 154 ~~~Gl~v~tev~d~~~~~-~l~~~vd~lqIgAr~~~N--------------------------~~LL~~va~~~kPV--i 204 (335)
T PRK08673 154 EETGLPIVTEVMDPRDVE-LVAEYVDILQIGARNMQN--------------------------FDLLKEVGKTNKPV--L 204 (335)
T ss_pred HHcCCcEEEeeCCHHHHH-HHHHhCCeEEECcccccC--------------------------HHHHHHHHcCCCcE--E
Confidence 578899999998755544 445779999999888855 24778888889998 3
Q ss_pred eccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 221 TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 221 vN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
+-.|- ..|.+.+. .|.|+ +...|=+++++--
T Consensus 205 Lk~G~---------~~ti~E~l-~A~e~---i~~~GN~~viL~e 235 (335)
T PRK08673 205 LKRGM---------SATIEEWL-MAAEY---ILAEGNPNVILCE 235 (335)
T ss_pred EeCCC---------CCCHHHHH-HHHHH---HHHcCCCeEEEEE
Confidence 22220 01333333 33333 5677878877743
No 52
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=85.05 E-value=1.3 Score=49.66 Aligned_cols=56 Identities=21% Similarity=0.375 Sum_probs=42.9
Q ss_pred eeecCCC---CccccccHHHHHHHHHHHhc------CCC-CcEEEEeeeeecCCCCCC-CCceeeecC
Q 004907 624 EYVSCPS---CGRTLFDLQEISAEIREKTS------HLP-GVSIAIMGCIVNGPGEMA-DADFGYVGG 680 (724)
Q Consensus 624 e~ISCPs---CGRTlfDLq~~~~~Ik~~t~------hLk-gvkIAVMGCIVNGPGEma-dAD~GyvGg 680 (724)
..++||+ |.--.+|-+.+..++.+.+. .+| .+||+|-||- |.=+..- -+|+|++|.
T Consensus 156 ti~aC~G~~~C~~a~~DT~~l~~~L~~~~~~~~~~~~lP~KfKI~vSGCp-n~C~~~~~~~DIG~iG~ 222 (402)
T TIGR02064 156 TPESCVGPARCEFACYDTLKACYELTMEYQDELHRPAFPYKFKFKFSGCP-NDCVAAIARSDFAVIGT 222 (402)
T ss_pred ceecCCCcccCCCcccccHHHHHHHHHHHHhhhhhccCCccccccccccc-cccccceeccCceeecc
Confidence 4789996 55557788888887777663 366 6899999997 5556554 899999985
No 53
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=83.71 E-value=26 Score=44.96 Aligned_cols=194 Identities=15% Similarity=0.219 Sum_probs=131.8
Q ss_pred CCHHHHHHHHHHHHH-------------------HHHHHHHHhhh--cCCCcceeecCCCCHHHHHHHhhhcC-ccccCC
Q 004907 115 KDVAGTVEEVMRIAD-------------------ACFEIKNSLVQ--KNYNIPLVADIHFAPSVALRVAECFD-KIRVNP 172 (724)
Q Consensus 115 ~Dv~atv~Qi~~L~~-------------------a~~~I~~~L~~--~~~~iPLVADIHF~~~lAl~a~~~vd-kiRINP 172 (724)
.|.+..+++.++..+ .+..+...+.. ..+++||.-|. +++.++.+|++++. |==||=
T Consensus 381 ~d~~~al~~A~~qve~GA~iIDVn~g~~~id~~eem~rvv~~i~~~~~~~~vPlsIDS-~~~~ViEaaLk~~~G~~IINS 459 (1229)
T PRK09490 381 EDYDEALDVARQQVENGAQIIDINMDEGMLDSEAAMVRFLNLIASEPDIARVPIMIDS-SKWEVIEAGLKCIQGKGIVNS 459 (1229)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHhhhccCCceEEEeC-CcHHHHHHHHhhcCCCCEEEe
Confidence 788888988888877 33344443322 24689999997 67899989988743 333777
Q ss_pred CCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcC--CCchHHHHHHHHHHH
Q 004907 173 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFAR 250 (724)
Q Consensus 173 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amVeSAle~~~ 250 (724)
=|..+++ ++|.+++..||+||.++=+... ++ -| +|.+.=++-|.+.++
T Consensus 460 Is~~~~~---------------------~~~~~~~~l~~kyga~vV~m~~----de-----~G~~~t~e~r~~ia~r~~~ 509 (1229)
T PRK09490 460 ISLKEGE---------------------EKFIEHARLVRRYGAAVVVMAF----DE-----QGQADTRERKIEICKRAYD 509 (1229)
T ss_pred CCCCCCC---------------------ccHHHHHHHHHHhCCCEEEEec----CC-----CCCCCCHHHHHHHHHHHHH
Confidence 6764322 2577899999999999966652 22 24 578888999999999
Q ss_pred HHHH-CCC--CcEEE-----EEecC------ChhHHHHHHHHHHHHhhcCCC-CccccccccccCCCCC------Cchhh
Q 004907 251 ICRK-LDF--HNFLF-----SMKAS------NPVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAGEGED------GRMKS 309 (724)
Q Consensus 251 i~e~-~~F--~divi-----S~KaS------nv~~~v~Ayrlla~~m~~~g~-dYPLHLGVTEAG~~~~------G~IKS 309 (724)
++.+ +|| +||+| .+++. ...++++|-|++.++ + .....+||.==--|.. -.+.|
T Consensus 510 ~~~~~~Gi~~~dIi~Dplv~~v~t~~ee~~~~~~~~leair~ik~~-----~P~~~~~~GlSNiSFgl~g~~~~R~~lns 584 (1229)
T PRK09490 510 ILTEEVGFPPEDIIFDPNIFAVATGIEEHNNYAVDFIEATRWIKQN-----LPHAKISGGVSNVSFSFRGNNPVREAIHA 584 (1229)
T ss_pred HHHHHcCCCHHHEEEcCCcceeecChHHHHHHHHHHHHHHHHHHHH-----CCCCcEEEeeccccccCCCCCchHHHHHH
Confidence 8865 999 56654 66654 468899999999988 3 2348889887666662 23333
Q ss_pred H---HHHHHHhhcCCCceeEEecCCC-CcccchHHHHHH
Q 004907 310 A---IGIGTLLQDGLGDTIRVSLTEP-PEKEIDPCRRLA 344 (724)
Q Consensus 310 a---iGiG~LL~~GIGDTIRVSLT~d-P~~EV~v~~~Ll 344 (724)
+ .+|..=|..+|=|.--...-++ |.++.++|..++
T Consensus 585 ~FL~~a~~aGld~aIvnp~~~~~~~~i~~e~~~~~~~~l 623 (1229)
T PRK09490 585 VFLYHAIKAGMDMGIVNAGQLAIYDDIPPELREAVEDVV 623 (1229)
T ss_pred HHHHHHHHcCcchhhcCccccccccccCHHHHHHHHHHH
Confidence 2 3555556667777655554443 344556666664
No 54
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=82.32 E-value=1 Score=31.93 Aligned_cols=18 Identities=44% Similarity=1.088 Sum_probs=13.3
Q ss_pred eeecCCCCccccccHHHHH
Q 004907 624 EYVSCPSCGRTLFDLQEIS 642 (724)
Q Consensus 624 e~ISCPsCGRTlfDLq~~~ 642 (724)
+.+.||.|||+ |....+.
T Consensus 1 ~l~~C~~CgR~-F~~~~l~ 18 (25)
T PF13913_consen 1 ELVPCPICGRK-FNPDRLE 18 (25)
T ss_pred CCCcCCCCCCE-ECHHHHH
Confidence 45789999999 7655443
No 55
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=81.15 E-value=8.9 Score=41.22 Aligned_cols=97 Identities=11% Similarity=0.132 Sum_probs=66.1
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE 163 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~ 163 (724)
+|.+.+++|= .| ..-+.+.+++-+++|++ .+...++ +++.+++|+++|=++ ++.-+..+++
T Consensus 186 ~g~~~~l~vD--aN-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~--l~~~~~ipi~~dE~~~~~~~~~~~i~ 260 (357)
T cd03316 186 VGPDVDLMVD--AN-GRWDLAEAIRLARALEEYDLFWFEEPVPPDDLEGLAR--LRQATSVPIAAGENLYTRWEFRDLLE 260 (357)
T ss_pred hCCCCEEEEE--CC-CCCCHHHHHHHHHHhCccCCCeEcCCCCccCHHHHHH--HHHhCCCCEEeccccccHHHHHHHHH
Confidence 4556677761 12 12345666665566654 1222222 333588999999864 6777778887
Q ss_pred --hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 164 --CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 164 --~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
.+|-|.|.|...|.-. ...++...|+++|+++=+|.
T Consensus 261 ~~~~d~v~~k~~~~GGi~----------------------~~~~i~~~a~~~g~~~~~~~ 298 (357)
T cd03316 261 AGAVDIIQPDVTKVGGIT----------------------EAKKIAALAEAHGVRVAPHG 298 (357)
T ss_pred hCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeEeccC
Confidence 4999999999999744 35789999999999986664
No 56
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=80.71 E-value=10 Score=39.35 Aligned_cols=82 Identities=13% Similarity=0.206 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHH-------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchh
Q 004907 116 DVAGTVEEVMRIAD-------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRR 179 (724)
Q Consensus 116 Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~ 179 (724)
+.+.+++-+++|++ .....++ +++.+++|+.+|=++ ++.-+...++ .+|-|.+-|...|.-.
T Consensus 141 ~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~--l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGi~ 218 (265)
T cd03315 141 TPKQAIRALRALEDLGLDYVEQPLPADDLEGRAA--LARATDTPIMADESAFTPHDAFRELALGAADAVNIKTAKTGGLT 218 (265)
T ss_pred CHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHH--HHhhCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEecccccCHH
Confidence 45566666666665 2223333 334689999999875 4566666665 4999999999999844
Q ss_pred hhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 180 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 180 k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
.+.+++..|+++|+++=+|.
T Consensus 219 ----------------------~~~~~~~~A~~~gi~~~~~~ 238 (265)
T cd03315 219 ----------------------KAQRVLAVAEALGLPVMVGS 238 (265)
T ss_pred ----------------------HHHHHHHHHHHcCCcEEecC
Confidence 36789999999999998773
No 57
>PLN00178 sulfite reductase
Probab=80.03 E-value=12 Score=44.53 Aligned_cols=91 Identities=23% Similarity=0.311 Sum_probs=62.5
Q ss_pred eeecC--CCCccccccHHHHHHHHHHHhc------------------------------------------------CCC
Q 004907 624 EYVSC--PSCGRTLFDLQEISAEIREKTS------------------------------------------------HLP 653 (724)
Q Consensus 624 e~ISC--PsCGRTlfDLq~~~~~Ik~~t~------------------------------------------------hLk 653 (724)
+.++| |-|....+|.++++.+|.+.+. .||
T Consensus 183 NV~~~p~p~~~~e~~d~~~~a~~l~~~l~p~t~~y~e~~ld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ep~yg~~~LP 262 (623)
T PLN00178 183 NVLAPAAPFARKDYLFAQELAKNIAALLAPQSGAYYDIWVDGEKIMSAEPPEVTKARNDNSHGTNFEDSPEPIYGTQFLP 262 (623)
T ss_pred CeecCCCcCCchhhhhHHHHHHHHHHhhcccccchhhhhcccccccccccchhhhhhhcccccccccCCccccccccCCC
Confidence 56677 4888888999999998887531 477
Q ss_pred -CcEEEEeeeeecCCCCCCCCceeeecCCC--c---eeEeeeccee----------------eeecCChhHHHHHHHHHH
Q 004907 654 -GVSIAIMGCIVNGPGEMADADFGYVGGAP--G---KIDLYVGKTV----------------VKRGIAMEQATDALIQLI 711 (724)
Q Consensus 654 -gvkIAVMGCIVNGPGEmadAD~GyvGg~p--G---ki~Ly~gke~----------------V~~~Ipeeeavd~Li~lI 711 (724)
-.||||-||--|-- ..--.|+|++.... | +.++|+|+-. +. -|+.+++++-...++
T Consensus 263 RKFKiavsg~~~n~~-~~~~nDiG~~a~~~~~g~~~Gf~v~vGGg~g~~~~~~~t~pr~a~~l~-~v~~e~v~~v~~av~ 340 (623)
T PLN00178 263 RKFKIAVTVPGDNSV-DILTNDIGVVVVSDEAGEPQGYNIYVGGGMGRTHRNETTFPRLADPLG-YVPKEDILYAVKAIV 340 (623)
T ss_pred CCeEEEEecCccccc-cccccceEEEEEEeCCCcEeeEEEEEECccccCCCccCCCCccccccC-cCCHHHHHHHHHHHH
Confidence 68999999986654 33456999985321 2 4678887632 22 389999887555444
Q ss_pred ---Hhccc
Q 004907 712 ---KDHGR 716 (724)
Q Consensus 712 ---k~~g~ 716 (724)
+++|+
T Consensus 341 ~~~rd~G~ 348 (623)
T PLN00178 341 ATQRDYGR 348 (623)
T ss_pred HHHHHhCc
Confidence 45554
No 58
>TIGR01502 B_methylAsp_ase methylaspartate ammonia-lyase. This model describes methylaspartate ammonia-lyase, also called beta-methylaspartase (EC 4.3.1.2). It follows methylaspartate mutase (composed of S and E subunits) in one of several possible pathways of glutamate fermentation.
Probab=79.51 E-value=9 Score=43.32 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=58.7
Q ss_pred HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
++.++++++.++++++||++|=.. ++.-+...++ ++|-|.|.+...|.-. ...++
T Consensus 283 ~la~Lr~~~~~~~~~vPI~aDEs~~t~~d~~~~i~~~a~d~v~iK~~k~GGIt----------------------~a~ki 340 (408)
T TIGR01502 283 AMADLRAELDGRGVDAEIVADEWCNTVEDVKFFTDAKAGHMVQIKTPDVGGVN----------------------NIARA 340 (408)
T ss_pred HHHHHHHHhhcCCCCceEEecCCCCCHHHHHHHHHhCCCCEEEeCccccCCHH----------------------HHHHH
Confidence 455677766677899999999874 4777777766 4999999999999854 35789
Q ss_pred HHHHHhcCCcEEEee--ccCCC
Q 004907 207 VEKCKKYGRAVRIGT--NHGSL 226 (724)
Q Consensus 207 v~~ake~g~~IRIGv--N~GSL 226 (724)
++.|+++|+++=+|- |.+++
T Consensus 341 a~lA~~~Gi~~~~g~~~~es~I 362 (408)
T TIGR01502 341 IMYCKANGMGAYVGGTCNETNR 362 (408)
T ss_pred HHHHHHcCCEEEEeCCCCCCHH
Confidence 999999999998874 34444
No 59
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=79.23 E-value=17 Score=41.08 Aligned_cols=69 Identities=10% Similarity=0.041 Sum_probs=45.5
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHH
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYR 277 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayr 277 (724)
.++.+++.|+- ||-+--=|++++++++.|... =.+.+++.++.+.+.||.+|.+.+=--=+..+.+..+
T Consensus 165 ~l~~l~~aGvn-RiSiGVQSf~d~vLk~lgR~~--~~~~~~~~i~~l~~~g~~~v~~DlI~GlPgqT~e~~~ 233 (449)
T PRK09058 165 KADAALDAGAN-RFSIGVQSFNTQVRRRAGRKD--DREEVLARLEELVARDRAAVVCDLIFGLPGQTPEIWQ 233 (449)
T ss_pred HHHHHHHcCCC-EEEecCCcCCHHHHHHhCCCC--CHHHHHHHHHHHHhCCCCcEEEEEEeeCCCCCHHHHH
Confidence 46777888864 666666788999999998321 1356667777888999988777664332333333333
No 60
>cd00308 enolase_like Enolase-superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion. Enolase superfamily contains different enzymes, like enolases, glutarate-, fucanate- and galactonate dehydratases, o-succinylbenzoate synthase, N-acylamino acid racemase, L-alanine-DL-glutamate epimerase, mandelate racemase, muconate lactonizing enzyme and 3-methylaspartase.
Probab=78.65 E-value=12 Score=37.94 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=46.6
Q ss_pred hcCCCcceeecCCCC-HHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++|+.+|=++. +.-....++ .++-+.|.|..+|.-. ...++++.|+++|++
T Consensus 141 ~~~~~~pIa~dEs~~~~~~~~~~~~~~~~d~~~~k~~~~GGi~----------------------~~~~i~~~a~~~gi~ 198 (229)
T cd00308 141 RRRTGIPIAADESVTTVDDALEALELGAVDILQIKPTRVGGLT----------------------ESRRAADLAEAFGIR 198 (229)
T ss_pred HhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCE
Confidence 346889999998865 333335555 4999999999998743 367899999999999
Q ss_pred EEEeec
Q 004907 217 VRIGTN 222 (724)
Q Consensus 217 IRIGvN 222 (724)
+=+|..
T Consensus 199 ~~~~~~ 204 (229)
T cd00308 199 VMVHGT 204 (229)
T ss_pred EeecCC
Confidence 977654
No 61
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=78.49 E-value=68 Score=34.39 Aligned_cols=122 Identities=11% Similarity=0.200 Sum_probs=77.2
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
+++.+++ .++...+|++.|+|--..+. .+.+.+|-+-|--+|+-+ .+++++
T Consensus 67 gl~~L~~--~~~~~Gl~~~Tev~d~~~v~-~~~e~vdilqIgs~~~~n--------------------------~~LL~~ 117 (250)
T PRK13397 67 GIRYLHE--VCQEFGLLSVSEIMSERQLE-EAYDYLDVIQVGARNMQN--------------------------FEFLKT 117 (250)
T ss_pred HHHHHHH--HHHHcCCCEEEeeCCHHHHH-HHHhcCCEEEECcccccC--------------------------HHHHHH
Confidence 6667766 56778999999998766555 445689999999999854 348888
Q ss_pred HHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE-------ecCChhHHHHHHHHHHHH
Q 004907 210 CKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM-------KASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 210 ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~-------KaSnv~~~v~Ayrlla~~ 282 (724)
+.+.|+||=|=. |- +.|++.| +.|.|+ +.+.|-++|++== ...+-..-+.+...|.++
T Consensus 118 va~tgkPVilk~--G~---------~~t~~e~-~~A~e~---i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~ 182 (250)
T PRK13397 118 LSHIDKPILFKR--GL---------MATIEEY-LGALSY---LQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQK 182 (250)
T ss_pred HHccCCeEEEeC--CC---------CCCHHHH-HHHHHH---HHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHH
Confidence 888899993322 20 1344433 344444 3466666766642 111102234555556666
Q ss_pred hhcCCCCccccccccccC
Q 004907 283 MYVHGWDYPLHLGVTEAG 300 (724)
Q Consensus 283 m~~~g~dYPLHLGVTEAG 300 (724)
+++|.=.|.|-++
T Consensus 183 -----~~lPVivd~SHs~ 195 (250)
T PRK13397 183 -----TDLPIIVDVSHST 195 (250)
T ss_pred -----hCCCeEECCCCCC
Confidence 6788778888663
No 62
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=76.50 E-value=55 Score=32.90 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=50.7
Q ss_pred ceeecCCCC-----HHHH-HHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 146 PLVADIHFA-----PSVA-LRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 146 PLVADIHF~-----~~lA-l~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
++++|+|+. +... ..+++. +|-+=+.+- .|. . .+.++++.|+++|++.=
T Consensus 55 ~i~~D~k~~di~~~~~~~~~~~~~~gad~vtvh~e-~g~-~----------------------~l~~~i~~~~~~g~~~~ 110 (215)
T PRK13813 55 PVIADLKVADIPNTNRLICEAVFEAGAWGIIVHGF-TGR-D----------------------SLKAVVEAAAESGGKVF 110 (215)
T ss_pred CEEEEeeccccHHHHHHHHHHHHhCCCCEEEEcCc-CCH-H----------------------HHHHHHHHHHhcCCeEE
Confidence 788899985 2222 345555 676666664 221 1 36779999999998664
Q ss_pred EeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE
Q 004907 219 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 263 (724)
Q Consensus 219 IGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS 263 (724)
+-+|..+. .-++.| .+-....++++.+.||.-.+++
T Consensus 111 v~~~~~~~--~~~~~~-------~~~~~~v~~m~~e~G~~g~~~~ 146 (215)
T PRK13813 111 VVVEMSHP--GALEFI-------QPHADKLAKLAQEAGAFGVVAP 146 (215)
T ss_pred EEEeCCCC--CCCCCH-------HHHHHHHHHHHHHhCCCeEEEC
Confidence 44454321 111111 1334555778999999877654
No 63
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=76.37 E-value=20 Score=40.48 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=46.7
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHH
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVM 272 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~ 272 (724)
-++..++.|+- ||..+-=|++++++.+-|- .....+..|++ .+.+.||.+|.+-+=--=|..+
T Consensus 139 ~~~~l~~~GvN-RiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~---~~~~~g~~~in~DLIyglP~QT 202 (416)
T COG0635 139 KFKALKEAGVN-RISLGVQSFNDEVLKALGRIHDEEEAKEAVE---LARKAGFTSINIDLIYGLPGQT 202 (416)
T ss_pred HHHHHHHcCCC-EEEeccccCCHHHHHHhcCCCCHHHHHHHHH---HHHHcCCCcEEEEeecCCCCCC
Confidence 45788999999 9999999999999999994 45455555554 4556999988877644333333
No 64
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=75.69 E-value=23 Score=43.20 Aligned_cols=172 Identities=20% Similarity=0.236 Sum_probs=123.4
Q ss_pred hhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 139 VQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 139 ~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+....++||+=|.-- +.+-..++++ -.|-=+|-=|+-++ +++|...++.||+||.++
T Consensus 93 ~a~~~~vPlMIDSs~-~eviEagLk~~qGk~ivNSis~eeg---------------------e~~f~~~~~LvkkYGaaV 150 (842)
T COG1410 93 LANEPTVPLMIDSSE-WEVIEAGLKCAQGKCIVNSINYEEG---------------------EERFEKVAELVKKYGAAV 150 (842)
T ss_pred hccCCCCceEEehhH-HHHHHHHHhhccCceeeeeeeeccc---------------------HHHHHHHHHHHHHhCCcE
Confidence 445677999999863 4444455665 44555788888654 346889999999999999
Q ss_pred EEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCC--CcEEEEEec-----------CChhHHHHHHHHHHHHhh
Q 004907 218 RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF--HNFLFSMKA-----------SNPVVMVQAYRLLVAEMY 284 (724)
Q Consensus 218 RIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F--~diviS~Ka-----------Snv~~~v~Ayrlla~~m~ 284 (724)
.++.+ ++. ..++|++-=++=|-+-..++++.|| +||+|-.=. .+...+|+|-|.+.+++
T Consensus 151 Vvma~----DE~---GqA~t~eRK~eIakR~y~l~~~~gfpp~dIIfDPnvf~iaTgiEEh~~~gvd~Ieair~Ik~~L- 222 (842)
T COG1410 151 VVMTI----DEE---GQARTAERKFEIAKRAYILTEEVGFPPEDIIFDPNVFPIATGIEEHRNYGVDTIEAIRRIKKEL- 222 (842)
T ss_pred EEEee----ccc---cccccHHHHHHHHHHHHHHHHhcCCCchheeeccceeeeccchhhhhhhHHHHHHHHHHHHHhC-
Confidence 99983 322 1126777777777777789999999 678764321 24567899999999883
Q ss_pred cCCCCccccccccccCCCCCCchhhHHH-------HHHHhhcCCCceeEEecCCCCcccchHHHHH
Q 004907 285 VHGWDYPLHLGVTEAGEGEDGRMKSAIG-------IGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 343 (724)
Q Consensus 285 ~~g~dYPLHLGVTEAG~~~~G~IKSaiG-------iG~LL~~GIGDTIRVSLT~dP~~EV~v~~~L 343 (724)
-..=.-+||..-.-+..|.++.++. |+.=|-.||=+..+.-+-+++..|.+-+.+-
T Consensus 223 ---P~~~tt~GvSNvSFslrg~~Re~lnavFLy~~i~aGmD~aIVNa~kl~~yd~I~~elrea~ed 285 (842)
T COG1410 223 ---PHVLTTLGLSNVSFGLRGAVREVLNSVFLYEAISAGLDMAIVNAGKLLIYDNITAELREAVED 285 (842)
T ss_pred ---ccceeccccccccCCCChHHHHhhhHHHHHHHHhcCCchhhccccchhhhhccCHHHHHHHHH
Confidence 1345678999999999998888764 5555677787888777777777777544433
No 65
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=74.19 E-value=72 Score=33.91 Aligned_cols=104 Identities=17% Similarity=0.193 Sum_probs=63.1
Q ss_pred eeecCCCCHHHHHHHhhh-cCcccc-CC-------CCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 147 LVADIHFAPSVALRVAEC-FDKIRV-NP-------GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 147 LVADIHF~~~lAl~a~~~-vdkiRI-NP-------GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.+=.=-+++-...|+++ ++.||| -| .|++. ..+..-+++.++++.||++|..+
T Consensus 66 v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~~~-----------------~~~e~~~~~~~~i~~a~~~G~~v 128 (262)
T cd07948 66 ILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGK-----------------SITEIIESAVEVIEFVKSKGIEV 128 (262)
T ss_pred EEEEecCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCC-----------------CHHHHHHHHHHHHHHHHHCCCeE
Confidence 343333455555677776 898987 23 33332 12344556788999999999999
Q ss_pred EEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHH
Q 004907 218 RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 282 (724)
Q Consensus 218 RIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~v~Ayrlla~~ 282 (724)
+++.-..+ + +| .+-..+.++.+.+.|-+. |+++-| +|..+-+-++.+.++
T Consensus 129 ~~~~eda~---------r-~~---~~~l~~~~~~~~~~g~~~--i~l~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 129 RFSSEDSF---------R-SD---LVDLLRVYRAVDKLGVNR--VGIADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred EEEEEeeC---------C-CC---HHHHHHHHHHHHHcCCCE--EEECCcCCCCCHHHHHHHHHHHHHh
Confidence 99873222 2 22 223446777777888774 566654 455555555555554
No 66
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=73.22 E-value=85 Score=35.25 Aligned_cols=163 Identities=17% Similarity=0.217 Sum_probs=97.4
Q ss_pred CceeEEE----eeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------------------HHHHHHH
Q 004907 87 KTRTVMV----GNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------------------ACFEIKN 136 (724)
Q Consensus 87 ~Tr~V~V----G~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------------------a~~~I~~ 136 (724)
....|.| |++.|||++|+.|=.= ..+-.+-+..++-..+|.+ +++.+++
T Consensus 81 ~~~~v~v~~~~~~v~iGg~~~l~vIAG-PCsIEs~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~ 159 (352)
T PRK13396 81 EASEVVVPTPNGPVPFGENHPVVVVAG-PCSVENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAA 159 (352)
T ss_pred CCceEEEecCcCCeEecCCCeEEEEEe-CCcccCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHH
Confidence 3455767 7899999997433211 3334444555555555554 4555555
Q ss_pred HhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 137 SLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 137 ~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
.++...+|++.++|--..+- .+.+.+|-+-|--+|+-+ .++++++-+.|+|
T Consensus 160 --~~~e~Gl~~~tev~d~~~v~-~~~~~~d~lqIga~~~~n--------------------------~~LL~~va~t~kP 210 (352)
T PRK13396 160 --AREATGLGIITEVMDAADLE-KIAEVADVIQVGARNMQN--------------------------FSLLKKVGAQDKP 210 (352)
T ss_pred --HHHHcCCcEEEeeCCHHHHH-HHHhhCCeEEECcccccC--------------------------HHHHHHHHccCCe
Confidence 45678899999998655444 556679999999999965 2478888888999
Q ss_pred EEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCcEEEEE------ec--CChhHHHHHHHHHHHHhhcCC
Q 004907 217 VRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSM------KA--SNPVVMVQAYRLLVAEMYVHG 287 (724)
Q Consensus 217 IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS~------Ka--Snv~~~v~Ayrlla~~m~~~g 287 (724)
|=+ ++=.. |++.+.. |.|+ +.+.|-++|++== .+ .+-..-+.+...|.++
T Consensus 211 Vll------------k~G~~~t~ee~~~-A~e~---i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~----- 269 (352)
T PRK13396 211 VLL------------KRGMAATIDEWLM-AAEY---ILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSL----- 269 (352)
T ss_pred EEE------------eCCCCCCHHHHHH-HHHH---HHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHh-----
Confidence 832 33112 5544433 3343 3456666666531 21 2222234555556555
Q ss_pred CCccccccccccC
Q 004907 288 WDYPLHLGVTEAG 300 (724)
Q Consensus 288 ~dYPLHLGVTEAG 300 (724)
+++|.=.-.|-|.
T Consensus 270 ~~lPVi~DpsH~~ 282 (352)
T PRK13396 270 THLPIMIDPSHGT 282 (352)
T ss_pred hCCCEEECCcccC
Confidence 6777744445444
No 67
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=72.88 E-value=14 Score=39.18 Aligned_cols=127 Identities=15% Similarity=0.292 Sum_probs=76.0
Q ss_pred cCCCCCeEEeecc--CCCCCCHHHHHHHHHHHHH---------H----HHHHHHHhhhc------CCCcceee-------
Q 004907 98 IGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIAD---------A----CFEIKNSLVQK------NYNIPLVA------- 149 (724)
Q Consensus 98 IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~~L~~---------a----~~~I~~~L~~~------~~~iPLVA------- 149 (724)
|||+ -+.|+++. +.|..+.+-+..|+++|.+ . +..+.+.+..+ .-.++++-
T Consensus 34 I~Gd-~v~V~~Lip~g~dPH~ye~~p~d~~~l~~Adlvv~~G~~~E~wl~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~ 112 (287)
T cd01137 34 IAGD-RVNVTSIVPPGADPHEYEPTPSDIKKLSKADLILYNGLNLEPWLERLVKNAGKDVPVVAVSEGIDPIPLEEGHYK 112 (287)
T ss_pred HcCC-eeEEEEecCCCCCccCCCCCHHHHHHHHhCCEEEEcCCCcHHHHHHHHHhcCCCCcEEEecCCccccccCccccC
Confidence 5554 48888886 4677999999999999999 2 33333321100 00122210
Q ss_pred ---cCC--CCHHHHHHHhhh-cCcc-ccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 150 ---DIH--FAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 150 ---DIH--F~~~lAl~a~~~-vdki-RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
|=| +||..+...++. .+++ ++.|.|=.. |+. .-+.|.++|+.+++.++..+..+++.+.+ +=+-
T Consensus 113 ~~~dPH~Wldp~~~~~~a~~Ia~~L~~~dP~~~~~----y~~---N~~~~~~~L~~l~~~~~~~l~~~~~~~~~--~v~~ 183 (287)
T cd01137 113 GKPDPHAWMSPKNAIIYVKNIAKALSEADPANAET----YQK---NAAAYKAKLKALDEWAKAKFATIPAEKRK--LVTS 183 (287)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHHHHHHCcccHHH----HHH---HHHHHHHHHHHHHHHHHHHHhcCCcccCE--EEEe
Confidence 222 456667666665 4554 689988321 111 13568889988888888777765544444 3566
Q ss_pred cCCCchHHHhhcC
Q 004907 223 HGSLSDRIMSYYG 235 (724)
Q Consensus 223 ~GSL~~~il~~yg 235 (724)
|-++ ..+.++||
T Consensus 184 H~af-~Y~~~~yG 195 (287)
T cd01137 184 EGAF-SYFAKAYG 195 (287)
T ss_pred cccH-HHHHHHcC
Confidence 6666 34566666
No 68
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=72.05 E-value=14 Score=40.10 Aligned_cols=90 Identities=10% Similarity=0.142 Sum_probs=63.7
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+-.++|=- | ..-+.+.+++-+++|++ .+..+++ .+++|+.+|=++ ++.-...
T Consensus 183 ~g~~~~l~vDa--N-~~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~-----~~~ipia~~E~~~~~~~~~~ 254 (355)
T cd03321 183 VGDGVGLMVDY--N-QSLTVPEAIERGQALDQEGLTWIEEPTLQHDYEGHARIAS-----ALRTPVQMGENWLGPEEMFK 254 (355)
T ss_pred hCCCCEEEEeC--C-CCcCHHHHHHHHHHHHcCCCCEEECCCCCcCHHHHHHHHH-----hcCCCEEEcCCCcCHHHHHH
Confidence 45555555532 2 23456667777777766 4455555 688999999885 5555556
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
.++ ++|-+++.|..+|.-. .+.++.+.|+++|+++
T Consensus 255 ~i~~~~~d~i~~~~~~~GGit----------------------~~~~ia~~A~~~gi~~ 291 (355)
T cd03321 255 ALSAGACDLVMPDLMKIGGVT----------------------GWLRASALAEQAGIPM 291 (355)
T ss_pred HHHhCCCCeEecCHhhhCCHH----------------------HHHHHHHHHHHcCCee
Confidence 655 4999999999999744 3678999999999997
No 69
>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional
Probab=71.59 E-value=1.4e+02 Score=31.48 Aligned_cols=178 Identities=20% Similarity=0.261 Sum_probs=95.5
Q ss_pred eEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------------HHHHHHHHhhhcCCCcceee
Q 004907 90 TVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------------ACFEIKNSLVQKNYNIPLVA 149 (724)
Q Consensus 90 ~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------------a~~~I~~~L~~~~~~iPLVA 149 (724)
.|.|+++.+|++.|..+=+-+-.+ .+...+|+.++.. .+..+...|++.-.++|+|+
T Consensus 3 ~~~~~~~~~~~~~~~i~v~l~~~~---~~e~~~~~~~~~~~~aD~vElRlD~l~~~~~~~~~~~~~~~l~~~~~~~PiI~ 79 (253)
T PRK02412 3 TVTVKNLVIGEGAPKIIVPIMGKT---LEEVLAEALAISKYDADIIEWRADFLEKISDVESVLAAAPAIREKFAGKPLLF 79 (253)
T ss_pred eeEEeceEeCCCCcEEEEEeCCCC---HHHHHHHHHHHhhcCCCEEEEEechhhccCCHHHHHHHHHHHHHhcCCCcEEE
Confidence 578999999999998888876443 5555666665543 11122222333333578877
Q ss_pred cCCCCH-------H--HHHHHhhhcCccccC-CCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 150 DIHFAP-------S--VALRVAECFDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 150 DIHF~~-------~--lAl~a~~~vdkiRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
-+=-.. . .=++..+. .+|.+ | .+-| +|++ .=++.+.++++.+++.++.+ |
T Consensus 80 T~R~~~eGG~~~~~~~~~~~ll~~--~~~~~~~-d~vD-------iEl~---------~~~~~~~~l~~~~~~~~~kv-I 139 (253)
T PRK02412 80 TFRTAKEGGEIALSDEEYLALIKA--VIKSGLP-DYID-------VELF---------SGKDVVKEMVAFAHEHGVKV-V 139 (253)
T ss_pred EECChhhCCCCCCCHHHHHHHHHH--HHhcCCC-CEEE-------Eecc---------CChHHHHHHHHHHHHcCCEE-E
Confidence 432111 0 00011111 11222 1 2212 1111 11245778899999888765 4
Q ss_pred eeccCCCchHHHhhcCCCc--hHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccccccc
Q 004907 220 GTNHGSLSDRIMSYYGDSP--RGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVT 297 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~--~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVT 297 (724)
+-.| .+..|| +.| .+.++-+++.|.+=++|-..+.+..+..+..+...+ ..+.+.+.|+ +++
T Consensus 140 ~S~H---------~f~~tP~~~~l----~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~-~~~~~~~~P~-i~~- 203 (253)
T PRK02412 140 LSYH---------DFEKTPPKEEI----VERLRKMESLGADIVKIAVMPQSEQDVLTLLNATRE-MKELYADQPL-ITM- 203 (253)
T ss_pred EeeC---------CCCCCcCHHHH----HHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHH-HHhcCCCCCE-EEE-
Confidence 4433 122355 433 457778889999999999988877665544433322 1222345674 122
Q ss_pred ccCCCCCCchh
Q 004907 298 EAGEGEDGRMK 308 (724)
Q Consensus 298 EAG~~~~G~IK 308 (724)
++|.-|++-
T Consensus 204 --~MG~~G~~S 212 (253)
T PRK02412 204 --SMGKLGRIS 212 (253)
T ss_pred --eCCCCchHH
Confidence 367777654
No 70
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=71.45 E-value=20 Score=36.82 Aligned_cols=80 Identities=9% Similarity=-0.011 Sum_probs=52.2
Q ss_pred cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec-cCCCchHHHhhcCCCchHHHH
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN-HGSLSDRIMSYYGDSPRGMVE 243 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN-~GSL~~~il~~yg~t~~amVe 243 (724)
+..|++.||..+... .+.+..+++.+.++++.+.|+++|+ ||++= ++--+ ...+.
T Consensus 104 a~~i~~~~~~~~~~~-----------~~~~~~~~~~~~l~~l~~~a~~~gv--~l~iE~~~~~~-----------~~~~~ 159 (275)
T PRK09856 104 AGYTLISAAHAGYLT-----------PPNVIWGRLAENLSELCEYAENIGM--DLILEPLTPYE-----------SNVVC 159 (275)
T ss_pred CCEEEEcCCCCCCCC-----------CHHHHHHHHHHHHHHHHHHHHHcCC--EEEEecCCCCc-----------ccccC
Confidence 889999998764311 2345567777888999999999986 55652 22111 12244
Q ss_pred HHHHHHHHHHHCCCCcEEEEEecCC
Q 004907 244 SAFEFARICRKLDFHNFLFSMKASN 268 (724)
Q Consensus 244 SAle~~~i~e~~~F~diviS~KaSn 268 (724)
++.+.+++++..+-.++.+-+-..+
T Consensus 160 t~~~~~~l~~~~~~~~v~~~~D~~h 184 (275)
T PRK09856 160 NANDVLHALALVPSPRLFSMVDICA 184 (275)
T ss_pred CHHHHHHHHHHcCCCcceeEEeecc
Confidence 5566777888887767766665444
No 71
>cd03317 NAAAR N-acylamino acid racemase (NAAAR), an octameric enzyme that catalyzes the racemization of N-acylamino acids. NAAARs act on a broad range of N-acylamino acids rather than amino acids. Enantiopure amino acids are of industrial interest as chiral building blocks for antibiotics, herbicides, and drugs. NAAAR is a member of the enolase superfamily, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=70.83 E-value=20 Score=38.70 Aligned_cols=58 Identities=21% Similarity=0.314 Sum_probs=45.1
Q ss_pred cCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 141 KNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 141 ~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.+++|+.+|=+. +..-....++ ++|-+.|.|..+|.-. ...++...|+.+|+++
T Consensus 225 ~~~~~pia~dEs~~~~~~~~~~~~~~~~d~~~ik~~~~GGit----------------------~~~~i~~~A~~~gi~~ 282 (354)
T cd03317 225 KLLKTPICLDESIQSAEDARKAIELGACKIINIKPGRVGGLT----------------------EALKIHDLCQEHGIPV 282 (354)
T ss_pred hhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEecccccCCHH----------------------HHHHHHHHHHHcCCcE
Confidence 3688999999984 4444445555 3899999999999844 3678999999999998
Q ss_pred EEe
Q 004907 218 RIG 220 (724)
Q Consensus 218 RIG 220 (724)
=+|
T Consensus 283 ~~g 285 (354)
T cd03317 283 WCG 285 (354)
T ss_pred Eec
Confidence 655
No 72
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=70.67 E-value=14 Score=40.10 Aligned_cols=87 Identities=22% Similarity=0.306 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
+|+.+++ .++.+.+|+|.|||-...+ ..+++++|=+-|--=|.-. .+++++
T Consensus 75 GL~iL~~--vk~~~GlpvvTeV~~~~~~-~~~ae~vDilQIgAr~~rn--------------------------tdLL~a 125 (281)
T PRK12457 75 GLRIFEE--VKARFGVPVITDVHEVEQA-APVAEVADVLQVPAFLARQ--------------------------TDLVVA 125 (281)
T ss_pred HHHHHHH--HHHHHCCceEEEeCCHHHH-HHHhhhCeEEeeCchhhch--------------------------HHHHHH
Confidence 4555555 5667999999999975554 4788889999986656522 258888
Q ss_pred HHhcCCcEEEeeccCCCchHHHhhcC--CCchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 210 CKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 210 ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amVeSAle~~~i~e~~~F~divi 262 (724)
|.+.|.||= +.| | -+|+.|.-+| +.+...|=++|++
T Consensus 126 ~~~t~kpV~------------lKr-Gqf~s~~e~~~aa----e~i~~~Gn~~vil 163 (281)
T PRK12457 126 IAKTGKPVN------------IKK-PQFMSPTQMKHVV----SKCREAGNDRVIL 163 (281)
T ss_pred HhccCCeEE------------ecC-CCcCCHHHHHHHH----HHHHHcCCCeEEE
Confidence 888899882 222 4 5776665443 3344556566554
No 73
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=70.65 E-value=34 Score=32.61 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=59.9
Q ss_pred cCccccCCCC--CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHH
Q 004907 165 FDKIRVNPGN--FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMV 242 (724)
Q Consensus 165 vdkiRINPGN--ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amV 242 (724)
+..+++.||. .... ....+.++++.+.++++++.|+++|+-|-+=...+...... .+
T Consensus 85 ~~~i~~~~g~~~~~~~-----------~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~~~~~~~-----~~----- 143 (213)
T PF01261_consen 85 AKYIVVHSGRYPSGPE-----------DDTEENWERLAENLRELAEIAEEYGVRIALENHPGPFSETP-----FS----- 143 (213)
T ss_dssp BSEEEEECTTESSSTT-----------SSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-SSSSSSSEE-----SS-----
T ss_pred CCceeecCcccccccC-----------CCHHHHHHHHHHHHHHHHhhhhhhcceEEEecccCccccch-----hh-----
Confidence 8889999994 3221 12447788889999999999999997776654333332110 01
Q ss_pred HHHHHHHHHHHHCCCCcEEEEEecCChh----HHHHHHHHHHHH
Q 004907 243 ESAFEFARICRKLDFHNFLFSMKASNPV----VMVQAYRLLVAE 282 (724)
Q Consensus 243 eSAle~~~i~e~~~F~diviS~KaSnv~----~~v~Ayrlla~~ 282 (724)
+-+..++|++.+-.++.+.+=.++.. ...++.+.+..+
T Consensus 144 --~~~~~~~l~~~~~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~ 185 (213)
T PF01261_consen 144 --VEEIYRLLEEVDSPNVGICFDTGHLIMAGEDPDEAIKRLAPR 185 (213)
T ss_dssp --HHHHHHHHHHHTTTTEEEEEEHHHHHHTTHHHHHHHHHHHHG
T ss_pred --HHHHHHHHhhcCCCcceEEEehHHHHHcCCCHHHHHHHhhcc
Confidence 34567788888888888888444433 223444444444
No 74
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=70.52 E-value=24 Score=37.50 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=47.7
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++|+.+|=+. ++.-+...++ .+|-+.+.|..+|+-. ...++...|+++|++
T Consensus 224 ~~~~~ipIa~~E~~~~~~~~~~~~~~~~~d~v~~~~~~~GGi~----------------------~~~~~~~~a~~~gi~ 281 (316)
T cd03319 224 RDKSPLPIMADESCFSAADAARLAGGGAYDGINIKLMKTGGLT----------------------EALRIADLARAAGLK 281 (316)
T ss_pred HhcCCCCEEEeCCCCCHHHHHHHHhcCCCCEEEEeccccCCHH----------------------HHHHHHHHHHHcCCC
Confidence 33688999999884 4555557777 4999999999999844 467899999999999
Q ss_pred EEEe
Q 004907 217 VRIG 220 (724)
Q Consensus 217 IRIG 220 (724)
+=+|
T Consensus 282 ~~~~ 285 (316)
T cd03319 282 VMVG 285 (316)
T ss_pred EEEE
Confidence 9776
No 75
>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder. It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....
Probab=69.59 E-value=39 Score=34.42 Aligned_cols=143 Identities=20% Similarity=0.293 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhh
Q 004907 120 TVEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI 199 (724)
Q Consensus 120 tv~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I 199 (724)
..+++.+|...++.+++ ...++||.=|- |++..+.+|+++-.++=+|-.++-.
T Consensus 52 ~~eE~~rl~~~l~~i~~----~~~~~plSIDT-~~~~v~~~aL~~g~~~ind~~~~~~---------------------- 104 (210)
T PF00809_consen 52 EEEEMERLVPVLQAIRE----ENPDVPLSIDT-FNPEVAEAALKAGADIINDISGFED---------------------- 104 (210)
T ss_dssp HHHHHHHHHHHHHHHHH----HHTTSEEEEEE-SSHHHHHHHHHHTSSEEEETTTTSS----------------------
T ss_pred HHHHHHHHHHHHHHHhc----cCCCeEEEEEC-CCHHHHHHHHHcCcceEEecccccc----------------------
Confidence 34667777777777765 24789999996 7899999999982233234443321
Q ss_pred hhhHHHHHHHHHhcCCcEEEeeccC---CCchHHHhhcC-CCchHHHHHHHHHHHHHHHCCC--CcEEEEEe---cCChh
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNHG---SLSDRIMSYYG-DSPRGMVESAFEFARICRKLDF--HNFLFSMK---ASNPV 270 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~G---SL~~~il~~yg-~t~~amVeSAle~~~i~e~~~F--~diviS~K---aSnv~ 270 (724)
..+++..|+++|.++=+=.+.| ..++. ..|. +-.+.+++-+.+.++.|++.|+ ++|+|--= +.+..
T Consensus 105 ---~~~~~~l~a~~~~~vV~m~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~i~~l~~~Gi~~~~Ii~DPgigf~~~~~ 179 (210)
T PF00809_consen 105 ---DPEMLPLAAEYGAPVVLMHSDGNPKGMPET--ADYRLDIAEEIIEFLEERIEALEKAGIPRERIILDPGIGFGKDPE 179 (210)
T ss_dssp ---STTHHHHHHHHTSEEEEESESSETTTTTSS--HHHSHSHHHHHHHHHHHHHHHHHHTT--GGGEEEETTTTSSTTHH
T ss_pred ---cchhhhhhhcCCCEEEEEeccccccccccc--chhhhhHHHHHHHHHHHHHHHHHHcCCCHHHEeeccccCcCCCHH
Confidence 1347889999999874333332 12222 1222 4457889999999999999999 88887420 33333
Q ss_pred HHHHHHHHHHHHhhcCCCCccccccc
Q 004907 271 VMVQAYRLLVAEMYVHGWDYPLHLGV 296 (724)
Q Consensus 271 ~~v~Ayrlla~~m~~~g~dYPLHLGV 296 (724)
.-.+..+.+..-.. -+.+|+=+|+
T Consensus 180 ~~~~~l~~i~~~~~--~~~~p~l~~~ 203 (210)
T PF00809_consen 180 QNLELLRNIEELKE--LFGYPILVGG 203 (210)
T ss_dssp HHHHHHHTHHHHHT--TSSSEBEEEE
T ss_pred HHHHHHHHHHHHHH--hCCCCEEEEE
Confidence 34444444433211 1478876654
No 76
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=69.20 E-value=2.4 Score=34.77 Aligned_cols=13 Identities=62% Similarity=1.272 Sum_probs=11.4
Q ss_pred ceeecCCCCcccc
Q 004907 623 TEYVSCPSCGRTL 635 (724)
Q Consensus 623 te~ISCPsCGRTl 635 (724)
-+.+.||+|||.|
T Consensus 44 ~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 44 DEIVFCPNCGRIL 56 (56)
T ss_pred CCeEECcCCCccC
Confidence 4899999999964
No 77
>PRK14017 galactonate dehydratase; Provisional
Probab=68.87 E-value=19 Score=39.71 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=48.3
Q ss_pred hcCCCcceeecCC-CCHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++||.+|=+ |++.-+...++ ++|-+++.|..+|.-. ...++.+.|.++|++
T Consensus 224 ~~~~~~pIa~dEs~~~~~~~~~li~~~a~d~v~~d~~~~GGit----------------------~~~~ia~~A~~~gi~ 281 (382)
T PRK14017 224 AAQTSIPIATGERLFSRWDFKRVLEAGGVDIIQPDLSHAGGIT----------------------ECRKIAAMAEAYDVA 281 (382)
T ss_pred HhcCCCCEEeCCccCCHHHHHHHHHcCCCCeEecCccccCCHH----------------------HHHHHHHHHHHcCCe
Confidence 3468899999977 46666666666 4999999999999844 367899999999999
Q ss_pred EEEeec
Q 004907 217 VRIGTN 222 (724)
Q Consensus 217 IRIGvN 222 (724)
+=+|..
T Consensus 282 ~~~h~~ 287 (382)
T PRK14017 282 LAPHCP 287 (382)
T ss_pred EeecCC
Confidence 877643
No 78
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=68.69 E-value=50 Score=35.73 Aligned_cols=113 Identities=11% Similarity=0.206 Sum_probs=69.2
Q ss_pred CcceeecCCCCHHHHHH-HhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhH------------------H
Q 004907 144 NIPLVADIHFAPSVALR-VAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF------------------S 204 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~-a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~------------------~ 204 (724)
+-|--.|-||.|..-|. -++.....+|.++-+-.+. ..-..++.+++++++|+ .
T Consensus 120 D~p~~~~~~~~~a~dLv~li~~~~~~~i~va~yPegh-------p~~~~~~~dl~~Lk~K~~aGA~~~iTQ~~Fd~~~~~ 192 (296)
T PRK09432 120 DLPPGSGKPEMYASDLVTLLKSVADFDISVAAYPEVH-------PEAKSAQADLINLKRKVDAGANRAITQFFFDVESYL 192 (296)
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhCCCccceeeCCCCC-------CCCCCHHHHHHHHHHHHHcCCCeeecccccchHHHH
Confidence 34555776666543332 2222444455443332111 11122556666666665 7
Q ss_pred HHHHHHHhcC--CcEEEee---------------ccCCCchHHHhhcC---CCchH----HHHHHHHHHHHHHHCCCCcE
Q 004907 205 PLVEKCKKYG--RAVRIGT---------------NHGSLSDRIMSYYG---DSPRG----MVESAFEFARICRKLDFHNF 260 (724)
Q Consensus 205 ~vv~~ake~g--~~IRIGv---------------N~GSL~~~il~~yg---~t~~a----mVeSAle~~~i~e~~~F~di 260 (724)
.+++.|++.| +||..|+ ..-++++.+++++. +.+++ =++-|.|.++-+.++|.+.|
T Consensus 193 ~f~~~~~~~Gi~vPIi~GI~pi~s~~~~~~~~~~~Gv~vP~~l~~~l~~~~d~~~~~~~~Gi~~a~e~i~~L~~~gv~Gv 272 (296)
T PRK09432 193 RFRDRCVSAGIDVEIVPGILPVSNFKQLKKFADMTNVRIPAWMAKMFDGLDDDAETRKLVGASIAMDMVKILSREGVKDF 272 (296)
T ss_pred HHHHHHHHcCCCCCEEeeccccCCHHHHHHHHHccCCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 8999999998 9999995 45667777766653 44443 35668888888888888877
Q ss_pred EEE
Q 004907 261 LFS 263 (724)
Q Consensus 261 viS 263 (724)
-|-
T Consensus 273 H~y 275 (296)
T PRK09432 273 HFY 275 (296)
T ss_pred EEe
Confidence 664
No 79
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=67.82 E-value=75 Score=36.19 Aligned_cols=139 Identities=14% Similarity=0.169 Sum_probs=77.4
Q ss_pred CCeEEeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccc--cCCCCCcchh
Q 004907 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIR--VNPGNFADRR 179 (724)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiR--INPGNig~~~ 179 (724)
.=|.|+...+.+ ..+.++.++.+.+ .+++|||=--- |+.++-+|++.+..=| |.+=|
T Consensus 71 D~Ialr~~S~DP----------ae~fa~~vk~V~~-----a~~~PLIL~~~-D~evl~aale~~~~~kpLL~aAt----- 129 (386)
T PF03599_consen 71 DMIALRLESGDP----------AEEFAKAVKKVAE-----AVDVPLILCGC-DPEVLKAALEACAGKKPLLYAAT----- 129 (386)
T ss_dssp SEEEEE-GGGST----------HHHHHHHHHHHHH-----C-SSEEEEESS-HHHHHHHHHHHTTTS--EEEEEB-----
T ss_pred cEEEEEecCCCh----------HHHHHHHHHHHHH-----hcCCCEEEEeC-CHHHHHHHHHHhCcCCcEEeEcC-----
Confidence 346677666655 3344445555555 57899886433 9999999999865433 33322
Q ss_pred hhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCc
Q 004907 180 AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHN 259 (724)
Q Consensus 180 k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~d 259 (724)
+++++++.+.|+++|.|+ ++ +++.+ ++.+-+-.+.|.++|++|
T Consensus 130 --------------------~eNyk~m~~lA~~y~~pl--~v-~sp~D--------------ln~lk~Ln~~l~~~Gv~d 172 (386)
T PF03599_consen 130 --------------------EENYKAMAALAKEYGHPL--IV-SSPID--------------LNLLKQLNIKLTELGVKD 172 (386)
T ss_dssp --------------------TTTHHHHHHHHHHCT-EE--EE-E-SSC--------------HHHHHHHHHHHHTTT-GG
T ss_pred --------------------HHHHHHHHHHHHHcCCeE--EE-Eeccc--------------HHHHHHHHHHHHhcCccc
Confidence 124677999999999997 66 33332 234556678899999999
Q ss_pred EEEEEecCC----hhHH---HHHHHHHHHHhhcCCCCcccccccccc
Q 004907 260 FLFSMKASN----PVVM---VQAYRLLVAEMYVHGWDYPLHLGVTEA 299 (724)
Q Consensus 260 iviS~KaSn----v~~~---v~Ayrlla~~m~~~g~dYPLHLGVTEA 299 (724)
||+--=+.. ...+ ...-|+.|=+- .+-+-||.=-..+||
T Consensus 173 IVlDpgt~~lGyGie~t~s~~~rIRraALk~-Dr~lgyPiI~~~~~a 218 (386)
T PF03599_consen 173 IVLDPGTRALGYGIEYTYSNMERIRRAALKG-DRPLGYPIITFPTEA 218 (386)
T ss_dssp EEEE---SSTTTTHHHHHHHHHHHHHHHHHT--GGG-S-BEECHHHC
T ss_pred EEecCCcccchhHHHHHHHHHHHHHHHHhcc-CcccCCceeecchhc
Confidence 999764443 3222 22334444332 444679974333443
No 80
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=67.70 E-value=1.1e+02 Score=32.10 Aligned_cols=101 Identities=15% Similarity=0.209 Sum_probs=57.7
Q ss_pred CCCcceeecCCCCHHHHHHHhhh-cCcccc-CCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 142 NYNIPLVADIHFAPSVALRVAEC-FDKIRV-NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 142 ~~~iPLVADIHF~~~lAl~a~~~-vdkiRI-NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
+.+..+.|=...+++-...|.++ ++.||+ -|-+=-...++ +..-.+.+-+++.+.++.||++|..+++
T Consensus 59 ~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~----------~~~~~~~~~~~~~~~i~~a~~~G~~v~~ 128 (259)
T cd07939 59 GLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHK----------LGKDRAWVLDQLRRLVGRAKDRGLFVSV 128 (259)
T ss_pred CCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 34455665555677766667776 888886 22221110111 1112334455678899999999999988
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS 267 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS 267 (724)
+.-..+- .+++-+ .+.++.+.+.|-+. |+++-|
T Consensus 129 ~~~~~~~---------~~~~~~----~~~~~~~~~~G~~~--i~l~DT 161 (259)
T cd07939 129 GAEDASR---------ADPDFL----IEFAEVAQEAGADR--LRFADT 161 (259)
T ss_pred eeccCCC---------CCHHHH----HHHHHHHHHCCCCE--EEeCCC
Confidence 7643321 234333 44555666677664 566654
No 81
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=67.30 E-value=19 Score=32.35 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHHHHHHHHHHHhcccc
Q 004907 640 EISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRW 717 (724)
Q Consensus 640 ~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipeeeavd~Li~lIk~~g~W 717 (724)
.-+..+.+++..-|+++|-..||. ||.|--.-+--.|++++.|. +-..||+++.+.+.|+++-.|
T Consensus 14 ~g~~~~~~~Le~~p~~~Vie~gCl------------~~Cg~C~~~pFAlVnG~~V~-A~t~eeL~~kI~~~i~e~~~~ 78 (78)
T PF07293_consen 14 SGTDQVYEKLEKDPDIDVIEYGCL------------SYCGPCAKKPFALVNGEIVA-AETAEELLEKIKEKIEENPMF 78 (78)
T ss_pred hhhHHHHHHHhcCCCccEEEcChh------------hhCcCCCCCccEEECCEEEe-cCCHHHHHHHHHHHHhcccCC
Confidence 345566777777799999999995 66765344445677888988 789999999999999987655
No 82
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=67.30 E-value=18 Score=37.81 Aligned_cols=168 Identities=16% Similarity=0.295 Sum_probs=99.0
Q ss_pred cCCCCCeEEeeccC---CCCCCHHHHHHHHHHHHH---------HHHHHHHHhhhcCCCcceee------------cCCC
Q 004907 98 IGSEHPIRVQTMTT---NDTKDVAGTVEEVMRIAD---------ACFEIKNSLVQKNYNIPLVA------------DIHF 153 (724)
Q Consensus 98 IGG~~PI~VQSMt~---t~T~Dv~atv~Qi~~L~~---------a~~~I~~~L~~~~~~iPLVA------------DIHF 153 (724)
||| ..+.|++|.. .|..+.+-+-.|+++|.+ .++.--+++.+...+.++++ |=||
T Consensus 19 I~g-d~v~V~~l~p~~g~dpH~y~~~p~d~~~l~~ADliv~~G~~lE~~~~k~~~~~~~~~v~~~~~~~~~~~~~~dPH~ 97 (264)
T cd01020 19 VGG-DHVEVTSIITNPDVDPHDFEPTPTDAAKVSTADIVVYNGGGYDPWMTKLLADTKDVIVIAADLDGHDDKEGDNPHL 97 (264)
T ss_pred HcC-CceEEEEecCCCCCCcccCCCCHHHHHHHhhCCEEEEeCCCchHHHHHHHHhcCCceEEeeecccccCCCCCCCce
Confidence 555 4689999977 677999999999999999 23322223333222334432 2232
Q ss_pred --CHHHHHHHhhh-cCcc-ccCCCCCcchhhhhhccccc--hHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCc
Q 004907 154 --APSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYT--DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLS 227 (724)
Q Consensus 154 --~~~lAl~a~~~-vdki-RINPGNig~~~k~f~~~~Yt--deey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~ 227 (724)
||..|...++. .+++ .+.|-|=. .|. -++|.++|+.++++++..+..++.+ ++=+.|.++
T Consensus 98 Wldp~n~~~~a~~I~~~L~~~dP~~~~---------~y~~N~~~~~~~l~~l~~~~~~~~~~~~~~----~~v~~H~af- 163 (264)
T cd01020 98 WYDPETMSKVANALADALVKADPDNKK---------YYQANAKKFVASLKPLAAKIAELSAKYKGA----PVAATEPVF- 163 (264)
T ss_pred ecCHhHHHHHHHHHHHHHHHhCcccHH---------HHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----eEEEeCchH-
Confidence 45666666665 4443 37888731 122 4569999999999888888776543 355678877
Q ss_pred hHHHhhcCCC---chHHHH--------HH---HHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHH
Q 004907 228 DRIMSYYGDS---PRGMVE--------SA---FEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 228 ~~il~~yg~t---~~amVe--------SA---le~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~ 282 (724)
..+.++||-. +.+.++ |+ .+-++.+++.+-.=|... ..++ ..+++....+|++
T Consensus 164 ~Y~~~~yGl~~~~~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~if~e-~~~~-~k~~~~l~~la~~ 230 (264)
T cd01020 164 DYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQIDALIVN-PQQA-SSATTNITGLAKR 230 (264)
T ss_pred HHHHHHCCCcccCHHHHHhhhcCCCCCCHHHHHHHHHHHHhCCCCEEEeC-CCCC-cHHHHHHHHHHHH
Confidence 5677888832 332211 22 344555566665533333 2222 2345555556666
No 83
>TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase.
Probab=66.87 E-value=27 Score=37.65 Aligned_cols=60 Identities=23% Similarity=0.363 Sum_probs=46.8
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++|+.+|=+. ++.-...+++ ++|-+++.|..+|.-. ...+++..|.++|++
T Consensus 219 ~~~~~~pia~dEs~~~~~~~~~~~~~~~~dvi~~d~~~~GGit----------------------~~~~~~~~A~~~gi~ 276 (324)
T TIGR01928 219 AKGTITPICLDESITSLDDARNLIELGNVKVINIKPGRLGGLT----------------------EVQKAIETCREHGAK 276 (324)
T ss_pred HhhcCCCEeeCCCcCCHHHHHHHHHcCCCCEEEeCcchhcCHH----------------------HHHHHHHHHHHcCCe
Confidence 34688999999875 3444445555 4999999999999844 467899999999999
Q ss_pred EEEee
Q 004907 217 VRIGT 221 (724)
Q Consensus 217 IRIGv 221 (724)
+=+|-
T Consensus 277 ~~~~~ 281 (324)
T TIGR01928 277 VWIGG 281 (324)
T ss_pred EEEcc
Confidence 98874
No 84
>TIGR02042 sir ferredoxin-sulfite reductase. monomeric enzyme that also catalyzes the reduction of sulfite to sulfide.
Probab=66.81 E-value=18 Score=42.58 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=41.6
Q ss_pred CCC-CcEEEEeeeeecCCCCCCCCceeeecCC-----CceeEeeecce----------------eeeecCChhHHHHHHH
Q 004907 651 HLP-GVSIAIMGCIVNGPGEMADADFGYVGGA-----PGKIDLYVGKT----------------VVKRGIAMEQATDALI 708 (724)
Q Consensus 651 hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~-----pGki~Ly~gke----------------~V~~~Ipeeeavd~Li 708 (724)
.|| -.||||-||--|-. ..---|+|++... .-..++|+|+- .+. -||.|++++-..
T Consensus 218 ~LPRKFKi~vsg~~~~~~-~~~~nDlgf~a~~~~~g~~~Gf~v~vGGglg~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ 295 (577)
T TIGR02042 218 YLPRKFKIAVTVPGDNSI-DLFTQDIGLVVVSNERGELEGFNIYVGGGMGRTHNKEETFARLADPLG-YVPKEDIYYAVK 295 (577)
T ss_pred CCCCCceEEEEcCCCCcc-cceecceEEEEEEeCCCcEeeEEEEEecccCCCCCCccccchhccccC-cCCHHHHHHHHH
Confidence 577 68999999964443 3334599998421 12478999863 223 289999888655
Q ss_pred HHHH---hccc
Q 004907 709 QLIK---DHGR 716 (724)
Q Consensus 709 ~lIk---~~g~ 716 (724)
.+++ ++|+
T Consensus 296 av~~~~rd~G~ 306 (577)
T TIGR02042 296 AIVATQRDYGD 306 (577)
T ss_pred HHHHHHHHhCC
Confidence 5554 5554
No 85
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=66.13 E-value=92 Score=35.01 Aligned_cols=106 Identities=16% Similarity=0.134 Sum_probs=58.2
Q ss_pred cceeecCCCC---HHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 145 IPLVADIHFA---PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 145 iPLVADIHF~---~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
.-+++|+|+- -..+..|+++ ++-|-+-..+ + +..+.++++.|+++|.++-+|
T Consensus 58 ~~ii~D~kl~d~g~~~v~~a~~aGAdgV~v~g~~--~----------------------~~~~~~~i~~a~~~G~~~~~g 113 (430)
T PRK07028 58 HTIVADMKTMDTGAIEVEMAAKAGADIVCILGLA--D----------------------DSTIEDAVRAARKYGVRLMAD 113 (430)
T ss_pred CEEEEEeeeccchHHHHHHHHHcCCCEEEEecCC--C----------------------hHHHHHHHHHHHHcCCEEEEE
Confidence 4678999995 2233345555 6666543111 1 012567899999999988777
Q ss_pred e-ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE---ecCChhHHHHHHHHHHHHhhcCCCCccc--cc
Q 004907 221 T-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM---KASNPVVMVQAYRLLVAEMYVHGWDYPL--HL 294 (724)
Q Consensus 221 v-N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~---KaSnv~~~v~Ayrlla~~m~~~g~dYPL--HL 294 (724)
+ |.. |+ .+.++.+.++|.+-|.+.. +.+......+..+.+.+. +++|+ |=
T Consensus 114 ~~s~~------------t~-------~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~-----~~iPI~a~G 169 (430)
T PRK07028 114 LINVP------------DP-------VKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEE-----VSIPIAVAG 169 (430)
T ss_pred ecCCC------------CH-------HHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhh-----CCCcEEEEC
Confidence 3 211 11 2234556677887776653 111112234555555555 56665 44
Q ss_pred cccc
Q 004907 295 GVTE 298 (724)
Q Consensus 295 GVTE 298 (724)
|||.
T Consensus 170 GI~~ 173 (430)
T PRK07028 170 GLDA 173 (430)
T ss_pred CCCH
Confidence 5543
No 86
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=66.09 E-value=21 Score=38.07 Aligned_cols=82 Identities=17% Similarity=0.233 Sum_probs=55.3
Q ss_pred CHHHHHHHHHHHHH-----------------------HHHHHHHHhhhcCCCcceeecCCCCHH---HHHHHhhhcCccc
Q 004907 116 DVAGTVEEVMRIAD-----------------------ACFEIKNSLVQKNYNIPLVADIHFAPS---VALRVAECFDKIR 169 (724)
Q Consensus 116 Dv~atv~Qi~~L~~-----------------------a~~~I~~~L~~~~~~iPLVADIHF~~~---lAl~a~~~vdkiR 169 (724)
|.++..+=+.+|++ ++..|++.|.++++++.||||=+-|-- .+...++++|=|-
T Consensus 87 d~~~~adYl~~l~~aA~P~~L~iEgP~d~g~r~~QI~~l~~Lr~~L~~~g~~v~iVADEWCNT~eDI~~F~da~A~dmVQ 166 (248)
T PF07476_consen 87 DPDRMADYLAELEEAAAPFKLRIEGPMDAGSREAQIEALAELREELDRRGINVEIVADEWCNTLEDIREFADAKAADMVQ 166 (248)
T ss_dssp -HHHHHHHHHHHHHHHTTS-EEEE-SB--SSHHHHHHHHHHHHHHHHHCT--EEEEE-TT--SHHHHHHHHHTT-SSEEE
T ss_pred CHHHHHHHHHHHHHhcCCCeeeeeCCcCCCChHHHHHHHHHHHHHHHhcCCCCeEEeehhcCCHHHHHHHHhcCCcCEEE
Confidence 77777777777777 788999999999999999999988743 2335556788899
Q ss_pred cCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 170 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 170 INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
|-.=.+|+-. +..+-|..||++|+--=.
T Consensus 167 IKtPDLGgi~----------------------ntieAvlyCk~~gvgaY~ 194 (248)
T PF07476_consen 167 IKTPDLGGIN----------------------NTIEAVLYCKEHGVGAYL 194 (248)
T ss_dssp E-GGGGSSTH----------------------HHHHHHHHHHHTT-EEEE
T ss_pred ecCCCccchh----------------------hHHHHHHHHHhcCCceee
Confidence 9877777633 245568999999975433
No 87
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=65.95 E-value=65 Score=34.05 Aligned_cols=90 Identities=14% Similarity=0.036 Sum_probs=54.4
Q ss_pred HHHHHHHhcCCcE--EEeeccCCCc-hHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHH
Q 004907 205 PLVEKCKKYGRAV--RIGTNHGSLS-DRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 281 (724)
Q Consensus 205 ~vv~~ake~g~~I--RIGvN~GSL~-~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~ 281 (724)
+.++++++.+++| |+|...-++. ....+.||.+.++ .+.+++-++.+++.|=+=|.+-+. + .+..+.+++
T Consensus 116 ~~i~ai~~a~i~ViaRtd~~pq~~~~~gg~~~~~~~~~~-~~~ai~Ra~ay~~AGAd~i~~e~~--~----~e~~~~i~~ 188 (240)
T cd06556 116 ETLQMLTAAAVPVIAHTGLTPQSVNTSGGDEGQYRGDEA-GEQLIADALAYAPAGADLIVMECV--P----VELAKQITE 188 (240)
T ss_pred HHHHHHHHcCCeEEEEeCCchhhhhccCCceeeccCHHH-HHHHHHHHHHHHHcCCCEEEEcCC--C----HHHHHHHHH
Confidence 3456666667776 6666322210 1111345555544 677999999999999999999864 2 344455676
Q ss_pred HhhcCCCCccccccccccCCCCCCchh
Q 004907 282 EMYVHGWDYPLHLGVTEAGEGEDGRMK 308 (724)
Q Consensus 282 ~m~~~g~dYPLHLGVTEAG~~~~G~IK 308 (724)
+ .+-|+-.-- ||.+-+|.+-
T Consensus 189 ~-----~~~P~~~~g--ag~~~dgq~l 208 (240)
T cd06556 189 A-----LAIPLAGIG--AGSGTDGQFL 208 (240)
T ss_pred h-----CCCCEEEEe--cCcCCCceEE
Confidence 6 678865422 3445555443
No 88
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=65.94 E-value=36 Score=38.34 Aligned_cols=66 Identities=17% Similarity=0.175 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhcCCCcceeecCCC--CHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 205 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 205 (724)
++..+++++ +.++||++|=.| +++-+..+++. ++-+.|-|..+|.-. ...+
T Consensus 293 g~~~L~~~~---g~~ipi~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGit----------------------e~~~ 347 (408)
T cd03313 293 GWAKLTAKL---GDKIQIVGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLT----------------------ETIE 347 (408)
T ss_pred HHHHHHHhc---CCCCeEEcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHH----------------------HHHH
Confidence 555666532 358999999754 78888888874 999999999999844 3577
Q ss_pred HHHHHHhcCCcEEEe
Q 004907 206 LVEKCKKYGRAVRIG 220 (724)
Q Consensus 206 vv~~ake~g~~IRIG 220 (724)
+++.|+.+|+++=+|
T Consensus 348 ia~lA~~~G~~~~~s 362 (408)
T cd03313 348 AIKLAKKNGYGVVVS 362 (408)
T ss_pred HHHHHHHcCCeEEcc
Confidence 899999999987554
No 89
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=65.91 E-value=20 Score=38.81 Aligned_cols=87 Identities=20% Similarity=0.307 Sum_probs=58.4
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
+|+.+++ .++.+.+|+|.|+|-... +..+++++|=+-|--=|.-. .+++++
T Consensus 69 GL~~L~~--vk~~~GlpvvTeV~~~~~-~~~v~~~~DilQIgArn~rn--------------------------~~LL~a 119 (264)
T PRK05198 69 GLKILQE--VKETFGVPVLTDVHEPEQ-AAPVAEVVDVLQIPAFLCRQ--------------------------TDLLVA 119 (264)
T ss_pred HHHHHHH--HHHHHCCceEEEeCCHHH-HHHHHhhCcEEEECchhcch--------------------------HHHHHH
Confidence 4555555 566799999999997554 45778889999987666622 257888
Q ss_pred HHhcCCcEEEeeccCCCchHHHhhcC--CCchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 210 CKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 210 ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amVeSAle~~~i~e~~~F~divi 262 (724)
+.+.|.||= ++| | -||+.|.-+|. .+...|=++|++
T Consensus 120 ~g~t~kpV~------------lKr-G~~~t~~e~~~aae----yi~~~Gn~~vil 157 (264)
T PRK05198 120 AAKTGKVVN------------IKK-GQFLAPWDMKNVVD----KVREAGNDKIIL 157 (264)
T ss_pred HhccCCeEE------------ecC-CCcCCHHHHHHHHH----HHHHcCCCeEEE
Confidence 888899882 222 4 58887765543 334455555554
No 90
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=65.87 E-value=23 Score=38.56 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=47.7
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++||.+|=+. +++-+...++ ++|-+++.|+-+|.-. ...++++.|+++|++
T Consensus 223 ~~~~~~pia~dEs~~~~~~~~~~~~~~~~d~v~~d~~~~GGit----------------------~~~~~~~lA~~~gi~ 280 (352)
T cd03325 223 AARTTIPIATGERLFSRWDFKELLEDGAVDIIQPDISHAGGIT----------------------ELKKIAAMAEAYDVA 280 (352)
T ss_pred HHhCCCCEEecccccCHHHHHHHHHhCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCc
Confidence 34689999999874 6666666666 4999999999998744 367899999999999
Q ss_pred EEEee
Q 004907 217 VRIGT 221 (724)
Q Consensus 217 IRIGv 221 (724)
+=++.
T Consensus 281 ~~~h~ 285 (352)
T cd03325 281 LAPHC 285 (352)
T ss_pred EeccC
Confidence 86554
No 91
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=65.81 E-value=91 Score=33.60 Aligned_cols=125 Identities=17% Similarity=0.234 Sum_probs=80.1
Q ss_pred CCCcc-eeecCCCC-H----HH----HHHHhh-h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 142 NYNIP-LVADIHFA-P----SV----ALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 142 ~~~iP-LVADIHF~-~----~l----Al~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
+.+.| ||||+-|. | .- |...++ . ++.|-|--| . ...+.|++
T Consensus 73 ~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg-----~----------------------~~~~~I~a 125 (264)
T PRK00311 73 GAPRALVVADMPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG-----E----------------------EVAETIKR 125 (264)
T ss_pred cCCCCcEEEeCCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----H----------------------HHHHHHHH
Confidence 67775 99999875 5 22 223334 3 566655433 1 14556777
Q ss_pred HHhcCCcE--EEeeccCCCchH-HHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcC
Q 004907 210 CKKYGRAV--RIGTNHGSLSDR-IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVH 286 (724)
Q Consensus 210 ake~g~~I--RIGvN~GSL~~~-il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~ 286 (724)
+.+.|||+ =||.|.=|-... =...-|.|.+ -.+.+++-++.+++.|=+=|++-+ ++. +.-+.++++
T Consensus 126 l~~agIpV~gHiGL~pq~~~~~gg~~i~grt~~-~a~~~i~ra~a~~eAGA~~i~lE~----v~~--~~~~~i~~~---- 194 (264)
T PRK00311 126 LVERGIPVMGHLGLTPQSVNVLGGYKVQGRDEE-AAEKLLEDAKALEEAGAFALVLEC----VPA--ELAKEITEA---- 194 (264)
T ss_pred HHHCCCCEeeeecccceeecccCCeeeecCCHH-HHHHHHHHHHHHHHCCCCEEEEcC----CCH--HHHHHHHHh----
Confidence 78899998 578776654221 0011244443 358899999999999999999987 332 455667777
Q ss_pred CCCccccccccccCCCCCCch
Q 004907 287 GWDYPLHLGVTEAGEGEDGRM 307 (724)
Q Consensus 287 g~dYPLHLGVTEAG~~~~G~I 307 (724)
.+-|+ +|+ =||..-||-|
T Consensus 195 -l~iP~-igi-GaG~~~dgqv 212 (264)
T PRK00311 195 -LSIPT-IGI-GAGPDCDGQV 212 (264)
T ss_pred -CCCCE-EEe-ccCCCCCcee
Confidence 67776 342 2777777765
No 92
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=65.73 E-value=29 Score=37.75 Aligned_cols=57 Identities=19% Similarity=0.244 Sum_probs=44.5
Q ss_pred CCCcceeecCCCC-HHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 142 NYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 142 ~~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
.+++||.+|=++. ..-....++ ++|-+.+.|...|.-. .+.+++..|+++|+++=
T Consensus 237 ~~~~pia~dE~~~~~~~~~~~i~~~~~d~~~~d~~~~GGit----------------------~~~~~~~~a~~~gi~~~ 294 (365)
T cd03318 237 RNRVPIMADESVSGPADAFELARRGAADVFSLKIAKSGGLR----------------------RAQKVAAIAEAAGIALY 294 (365)
T ss_pred hcCCCEEcCcccCCHHHHHHHHHhCCCCeEEEeecccCCHH----------------------HHHHHHHHHHHcCCcee
Confidence 5889999998763 444445555 3999999999999844 36789999999999875
Q ss_pred Ee
Q 004907 219 IG 220 (724)
Q Consensus 219 IG 220 (724)
+|
T Consensus 295 ~~ 296 (365)
T cd03318 295 GG 296 (365)
T ss_pred ec
Confidence 55
No 93
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=65.20 E-value=26 Score=40.41 Aligned_cols=72 Identities=22% Similarity=0.327 Sum_probs=51.1
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEE----EEEecCChhHHHHHHHHH
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFL----FSMKASNPVVMVQAYRLL 279 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~div----iS~KaSnv~~~v~Ayrll 279 (724)
+.++..|+.|+- ||-+|-=|.++++++..|.. .-++.+.+.++.+++.||.+|. +-+---+...+.+..+.+
T Consensus 270 e~L~~Lk~~Gv~-RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l 345 (488)
T PRK08207 270 EKLEVLKKYGVD-RISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEI 345 (488)
T ss_pred HHHHHHHhcCCC-eEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 357888889986 99999999999999999842 2346677778899999997554 444444444444444444
No 94
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=65.20 E-value=31 Score=38.00 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=50.1
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhh
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 284 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~ 284 (724)
.++..|+.|+- ||-+.-=|++++++++.|- .. ++.+++.++.+++.||.+|.+.+=.-=+..+.+..+.-.+...
T Consensus 105 ~l~~l~~~G~n-rislGvQS~~~~~L~~l~R~~~---~~~~~~ai~~~~~~g~~~v~~Dli~GlPgqt~~~~~~~l~~~~ 180 (370)
T PRK06294 105 YIRALALTGIN-RISIGVQTFDDPLLKLLGRTHS---SSKAIDAVQECSEHGFSNLSIDLIYGLPTQSLSDFIVDLHQAI 180 (370)
T ss_pred HHHHHHHCCCC-EEEEccccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 56888888864 7777778899999999983 22 3445556667888999876665433323344444444444443
Q ss_pred cCC
Q 004907 285 VHG 287 (724)
Q Consensus 285 ~~g 287 (724)
+.+
T Consensus 181 ~l~ 183 (370)
T PRK06294 181 TLP 183 (370)
T ss_pred ccC
Confidence 334
No 95
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=65.04 E-value=37 Score=37.14 Aligned_cols=91 Identities=18% Similarity=0.233 Sum_probs=57.8
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHHH
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVA 281 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaSnv~~~v~Ayrlla~ 281 (724)
.++..|+.|+. ||-+.-=|.++++++.+|.... .+.+++.++.+.+.||.++.+.+ .--+...+.+..+.+.+
T Consensus 102 ~l~~l~~~G~~-rvsiGvqS~~~~~l~~l~r~~~--~~~~~~~i~~l~~~g~~~v~~dli~GlPgqt~~~~~~~l~~~~~ 178 (377)
T PRK08599 102 KLQVLKDSGVN-RISLGVQTFNDELLKKIGRTHN--EEDVYEAIANAKKAGFDNISIDLIYALPGQTIEDFKESLAKALA 178 (377)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCCCC--HHHHHHHHHHHHHcCCCcEEEeeecCCCCCCHHHHHHHHHHHHc
Confidence 56777778854 8888888899999999984221 46788889999999997665544 44444555555544433
Q ss_pred HhhcCCC-CccccccccccCCCC
Q 004907 282 EMYVHGW-DYPLHLGVTEAGEGE 303 (724)
Q Consensus 282 ~m~~~g~-dYPLHLGVTEAG~~~ 303 (724)
+.-..+ -|||.+ +.|+..
T Consensus 179 -l~~~~i~~y~l~~---~pgT~~ 197 (377)
T PRK08599 179 -LDIPHYSAYSLIL---EPKTVF 197 (377)
T ss_pred -cCCCEEeeeceee---cCCChh
Confidence 211111 266654 555544
No 96
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=64.87 E-value=1.2e+02 Score=33.60 Aligned_cols=130 Identities=17% Similarity=0.238 Sum_probs=79.9
Q ss_pred hhcCCCcceeecCCCCHHHHHHHhhh-cCccccC----CCCCcchhhhh--------hccccchHHHHHHhhhhhhhHHH
Q 004907 139 VQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN----PGNFADRRAQF--------EQLEYTDDEYQKELQHIEEVFSP 205 (724)
Q Consensus 139 ~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRIN----PGNig~~~k~f--------~~~~Ytdeey~~ele~I~e~~~~ 205 (724)
+|+.+++|+|||+- +..=|+.+++. +|-||-- -||+..--+.. .-.-||+++-...-....--|.-
T Consensus 116 ~K~~f~~~fmad~~-~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~el 194 (293)
T PRK04180 116 DKWDFTVPFVCGAR-NLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYEL 194 (293)
T ss_pred HHHHcCCCEEccCC-CHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHH
Confidence 34467999999996 46677788876 9999977 67775421111 12357776622211112233333
Q ss_pred HHHHHHhcCCcEE-EeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHHHH
Q 004907 206 LVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVA 281 (724)
Q Consensus 206 vv~~ake~g~~IR-IGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS---~KaSnv~~~v~Ayrlla~ 281 (724)
+-+.++..++|+= |.. |-+ .||+ .++.+-++|.+-+.+. +|+.|+..+.++++....
T Consensus 195 L~ei~~~~~iPVV~~Ae--GGI---------~TPe--------daa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~ 255 (293)
T PRK04180 195 VKEVAELGRLPVVNFAA--GGI---------ATPA--------DAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATT 255 (293)
T ss_pred HHHHHHhCCCCEEEEEe--CCC---------CCHH--------HHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHH
Confidence 4444444567861 121 222 2552 4444556888888775 688999999999999888
Q ss_pred HhhcCCCCcccc
Q 004907 282 EMYVHGWDYPLH 293 (724)
Q Consensus 282 ~m~~~g~dYPLH 293 (724)
. |+-|--
T Consensus 256 ~-----~~~~~~ 262 (293)
T PRK04180 256 H-----YDDPEV 262 (293)
T ss_pred H-----cCCHHH
Confidence 8 777743
No 97
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=64.07 E-value=1.5e+02 Score=30.20 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHHH
Q 004907 243 ESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLV 280 (724)
Q Consensus 243 eSAle~~~i~e~~~F~diviS---~KaSnv~~~v~Ayrlla 280 (724)
+.+++.++.+.+.|.+-|.++ +++.|+..++++++.+.
T Consensus 194 ~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~~~~ 234 (235)
T cd00958 194 EEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAISAVV 234 (235)
T ss_pred HHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHHHHh
Confidence 446778888888999887776 78889988888887653
No 98
>COG2877 KdsA 3-deoxy-D-manno-octulosonic acid (KDO) 8-phosphate synthase [Cell envelope biogenesis, outer membrane]
Probab=63.81 E-value=17 Score=39.13 Aligned_cols=165 Identities=20% Similarity=0.439 Sum_probs=95.4
Q ss_pred eeEEEeeeecCCCCCeE-EeeccCCCCCCHH-HHHHHHHHHHH------------------------------HHHHHHH
Q 004907 89 RTVMVGNVAIGSEHPIR-VQTMTTNDTKDVA-GTVEEVMRIAD------------------------------ACFEIKN 136 (724)
Q Consensus 89 r~V~VG~V~IGG~~PI~-VQSMt~t~T~Dv~-atv~Qi~~L~~------------------------------a~~~I~~ 136 (724)
..|++|++.+|.+.|.+ +--|+--..+|.. .+..+++++.+ +++-+.+
T Consensus 3 ~~vk~g~i~~~n~~~~~LiaGpcviEs~d~a~~~a~~lk~~t~~lgi~~vfKsSfDKANRsSi~s~RGpGLeeglki~~~ 82 (279)
T COG2877 3 KVVKVGDIVIGNDLPFVLIAGPCVIESRDLALEIAEHLKELTEKLGIPYVFKSSFDKANRSSIHSYRGPGLEEGLKILQE 82 (279)
T ss_pred ceEEeCCEEecCCCceEEEeccceeccHHHHHHHHHHHHHHHhccCCceEEecccccccccccccccCCCHHHHHHHHHH
Confidence 57999999999987754 4556665555543 44556666666 4443333
Q ss_pred HhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 137 SLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 137 ~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
+|+...+|++.|+|-.+... .+++.||=|-|- -=+ - +=..++.+|-+.|.+
T Consensus 83 --vK~efgv~ilTDVHe~~q~~-~vA~VvDilQiP-AFL-c------------------------RQTDLl~A~AkTg~~ 133 (279)
T COG2877 83 --VKEEFGVPILTDVHEPSQAQ-PVAEVVDVLQIP-AFL-C------------------------RQTDLLVAAAKTGAV 133 (279)
T ss_pred --HHHHcCCceeeccCChhhcc-hHHhhhhhhcch-HHH-h------------------------hhHHHHHHHHHhCCe
Confidence 45579999999999866544 777888877763 111 1 125577778888888
Q ss_pred EEEeeccCCCchHHHhhcCCCchHHHHHHHH----HHHHHHH---CCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCC
Q 004907 217 VRIGTNHGSLSDRIMSYYGDSPRGMVESAFE----FARICRK---LDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 289 (724)
Q Consensus 217 IRIGvN~GSL~~~il~~yg~t~~amVeSAle----~~~i~e~---~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~d 289 (724)
|-| --|-. |+=+ .-+..|+.+++ .+-.||+ .||+|.|+-|.+- .+| ++ +.
T Consensus 134 vNi--KKgQF----LaPw--dMknvv~K~~~~gn~~v~lcERG~sFGYnnLV~DMrsl--~iM--------~~-----~~ 190 (279)
T COG2877 134 VNV--KKGQF----LAPW--DMKNIVEKFLETGNNKVILCERGASFGYNNLVVDMRSL--PIM--------KE-----FG 190 (279)
T ss_pred Eee--ccccc----cChh--HhhhHHHHHHhcCCCcEEEEeccCccCcchhHHHhhhh--HHH--------HH-----cC
Confidence 854 22322 1111 00122333332 2234443 6777776655442 222 11 45
Q ss_pred ccccccccccCCCCCC
Q 004907 290 YPLHLGVTEAGEGEDG 305 (724)
Q Consensus 290 YPLHLGVTEAG~~~~G 305 (724)
+|.-.-+|-+=-...|
T Consensus 191 ~PViFDaTHSvQ~pgg 206 (279)
T COG2877 191 APVIFDATHSVQQPGG 206 (279)
T ss_pred CCeEEecccceeCCCC
Confidence 8887777776444444
No 99
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=63.34 E-value=38 Score=37.81 Aligned_cols=54 Identities=13% Similarity=0.335 Sum_probs=40.0
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCC--CchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD--SPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~--t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
.++..|+.|+- ||-+.-=|+++++++..|. ++ +.+.+.++.+++.||.++.+.+
T Consensus 117 ~l~~l~~~Gvn-rislGvQS~~d~~L~~l~R~~~~----~~~~~ai~~l~~~G~~~v~~dl 172 (400)
T PRK07379 117 QLQGYRSLGVN-RVSLGVQAFQDELLALCGRSHRV----KDIFAAVDLIHQAGIENFSLDL 172 (400)
T ss_pred HHHHHHHCCCC-EEEEEcccCCHHHHHHhCCCCCH----HHHHHHHHHHHHcCCCeEEEEe
Confidence 45677888865 7777778889999999983 33 3455667788889998766554
No 100
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=63.15 E-value=1.9e+02 Score=29.79 Aligned_cols=144 Identities=13% Similarity=0.100 Sum_probs=77.3
Q ss_pred cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee---ccCCCchHHHhhcCCCchHH
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT---NHGSLSDRIMSYYGDSPRGM 241 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv---N~GSL~~~il~~yg~t~~am 241 (724)
+..|++.+|..... +++++ ..+...+.+.++.+.|+++|+. |++ ||-.. +..+
T Consensus 99 a~~i~~~~g~~~~~--------~~~~~---~~~~~~~~l~~l~~~a~~~Gv~--l~lE~~n~~~~-----------~~~~ 154 (258)
T PRK09997 99 NKKINCLVGKTPAG--------FSSEQ---IHATLVENLRYAANMLMKEDIL--LLIEPINHFDI-----------PGFH 154 (258)
T ss_pred CCEEEECCCCCCCC--------CCHHH---HHHHHHHHHHHHHHHHHHcCCE--EEEEeCCCcCC-----------CCCc
Confidence 77788888865221 22222 2456667788899999999855 576 55111 1113
Q ss_pred HHHHHHHHHHHHHCCCCcEEEEEecCChhH----HHHHHHHHHHHhhcCCCCcccccccccc---CCCCCCchhhHHHHH
Q 004907 242 VESAFEFARICRKLDFHNFLFSMKASNPVV----MVQAYRLLVAEMYVHGWDYPLHLGVTEA---GEGEDGRMKSAIGIG 314 (724)
Q Consensus 242 VeSAle~~~i~e~~~F~diviS~KaSnv~~----~v~Ayrlla~~m~~~g~dYPLHLGVTEA---G~~~~G~IKSaiGiG 314 (724)
+.++-+.++++++.+-.++.+-+=..+... ..++++.+. ++=.|+=+.+. +..-+|.|-=.-=+.
T Consensus 155 ~~~~~~~~~ll~~v~~~~v~l~~D~~h~~~~g~~~~~~~~~~~--------~ri~~vHikD~~~~~~~G~G~id~~~i~~ 226 (258)
T PRK09997 155 LTGTRQALKLIDDVGCCNLKIQYDIYHMQRMEGELTNTMTQWA--------DKIGHLQIADNPHRGEPGTGEINYDYLFK 226 (258)
T ss_pred cCCHHHHHHHHHHhCCCCEEEEeEHHHhhhcCCcHHHHHHHhh--------CcccEEEeCCCCCCCCCCCCcCCHHHHHH
Confidence 344455677888888888988885554432 223333333 23334433332 222345555444445
Q ss_pred HHhhcCCCceeEEecCCCCcccchHHHH
Q 004907 315 TLLQDGLGDTIRVSLTEPPEKEIDPCRR 342 (724)
Q Consensus 315 ~LL~~GIGDTIRVSLT~dP~~EV~v~~~ 342 (724)
+|-..|.--. +|+--+|.+-+..+.+
T Consensus 227 aL~~~Gy~G~--~~~E~~p~~~~~~s~~ 252 (258)
T PRK09997 227 VIENSDYNGW--VGCEYKPQTTTEAGLR 252 (258)
T ss_pred HHHHhCCCeE--EEEEEecCCCcHHHHH
Confidence 5555453222 3444456555555433
No 101
>PRK00077 eno enolase; Provisional
Probab=62.80 E-value=49 Score=37.46 Aligned_cols=86 Identities=15% Similarity=0.133 Sum_probs=62.8
Q ss_pred CCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCcceeecCCC--CHHHHHHHhh--hcCccccCCC
Q 004907 115 KDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAE--CFDKIRVNPG 173 (724)
Q Consensus 115 ~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~--~vdkiRINPG 173 (724)
.+.+..+....++.+ ++..+++++ +.++||++|=+| +++....+++ +++.+.|-|.
T Consensus 261 ~s~~e~~~~~~~l~e~y~i~~iEdPl~~~D~~g~~~L~~~~---~~~ipI~gdE~~~t~~~~~~~~i~~~a~d~v~ik~~ 337 (425)
T PRK00077 261 LTSEEMIDYLAELVDKYPIVSIEDGLDENDWEGWKLLTEKL---GDKVQLVGDDLFVTNTKRLKKGIEKGAANSILIKVN 337 (425)
T ss_pred CCHHHHHHHHHHHHhhCCcEEEEcCCCCccHHHHHHHHHhc---CCCCeEEcCCCccCCHHHHHHHHHhCCCCEEEeCcc
Confidence 455666666666655 555665531 236999999986 6888888887 4999999999
Q ss_pred CCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCc
Q 004907 174 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLS 227 (724)
Q Consensus 174 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~ 227 (724)
++|.-. ...+++..|+++|+..= +.|+|.+
T Consensus 338 ~~GGit----------------------ea~~ia~lA~~~gi~~~--vsh~sgE 367 (425)
T PRK00077 338 QIGTLT----------------------ETLDAIELAKRAGYTAV--VSHRSGE 367 (425)
T ss_pred ccCCHH----------------------HHHHHHHHHHHcCCeEE--EeCCCCc
Confidence 999844 35779999999999653 4466653
No 102
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=62.73 E-value=61 Score=34.05 Aligned_cols=64 Identities=25% Similarity=0.331 Sum_probs=48.8
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH---------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD---------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 162 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~---------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~ 162 (724)
+|++.||.+|-+ ..|.+..++|-++|.+ +++.|++ |.++| ||+=+=-=|...-|+.|+
T Consensus 51 i~~~~~vs~ev~----~~~~~~mi~eA~~l~~~~~~nv~VKIP~T~~Gl~Ai~~-L~~~G--i~vn~T~ifs~~Qa~~Aa 123 (222)
T PRK12656 51 IGDEASIHVQVV----AQDYEGILKDAHEIRRQCGDDVYIKVPVTPAGLAAIKT-LKAEG--YHITATAIYTVFQGLLAI 123 (222)
T ss_pred hCCCCcEEEEEE----ECCHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHH-HHHCC--CceEEeeeCCHHHHHHHH
Confidence 455789999998 4578999999999985 5666665 55666 555555579999999999
Q ss_pred hh-cCcc
Q 004907 163 EC-FDKI 168 (724)
Q Consensus 163 ~~-vdki 168 (724)
++ ++-|
T Consensus 124 ~aGa~yv 130 (222)
T PRK12656 124 EAGADYL 130 (222)
T ss_pred HCCCCEE
Confidence 96 6554
No 103
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=62.39 E-value=56 Score=35.79 Aligned_cols=96 Identities=9% Similarity=0.082 Sum_probs=62.3
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhcCCCcceeecCCC-C-HHHHHHHh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQKNYNIPLVADIHF-A-PSVALRVA 162 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~~~iPLVADIHF-~-~~lAl~a~ 162 (724)
+|.+.++.|=- | ..-|.+.+++=+++|++ .....++ +++.+++|+.+|=++ + +.-+...+
T Consensus 186 ~G~~~~l~vDa--n-~~~~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~--l~~~~~ipIa~~E~~~~~~~~~~~~i 260 (368)
T cd03329 186 VGPDMRLMHDG--A-HWYSRADALRLGRALEELGFFWYEDPLREASISSYRW--LAEKLDIPILGTEHSRGALESRADWV 260 (368)
T ss_pred hCCCCeEEEEC--C-CCcCHHHHHHHHHHhhhcCCCeEeCCCCchhHHHHHH--HHhcCCCCEEccCcccCcHHHHHHHH
Confidence 56666777611 1 12345555555555555 2222222 334688999999886 3 55455554
Q ss_pred h--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 163 E--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 163 ~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+ ++|-|.+.|...|+-. ...++...|.++|+++=++
T Consensus 261 ~~~a~d~v~~d~~~~GGit----------------------~~~~ia~~a~~~gi~~~~h 298 (368)
T cd03329 261 LAGATDFLRADVNLVGGIT----------------------GAMKTAHLAEAFGLDVELH 298 (368)
T ss_pred HhCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCEEEEE
Confidence 4 4999999999998844 3577999999999998553
No 104
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=62.10 E-value=38 Score=37.62 Aligned_cols=54 Identities=20% Similarity=0.248 Sum_probs=33.4
Q ss_pred HHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 207 VEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 207 v~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
++..++.|+- ||-+.-=|++++++++.|.... .+.+.+.++.+.+. |.++.+.+
T Consensus 125 L~~l~~~Gvn-risiGvQS~~~~~L~~l~R~~~--~~~~~~~i~~~~~~-~~~v~~dl 178 (394)
T PRK08898 125 FAQFRASGVN-RLSIGIQSFNDAHLKALGRIHD--GAEARAAIEIAAKH-FDNFNLDL 178 (394)
T ss_pred HHHHHHcCCC-eEEEecccCCHHHHHHhCCCCC--HHHHHHHHHHHHHh-CCceEEEE
Confidence 5677778876 6666667889999999883211 23444445555554 55444443
No 105
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=62.06 E-value=35 Score=36.74 Aligned_cols=60 Identities=13% Similarity=0.143 Sum_probs=47.1
Q ss_pred CCCcceeecCCC-CHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 142 NYNIPLVADIHF-APSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 142 ~~~iPLVADIHF-~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
.+++|+.+|=++ ++.-+...+.++|-|.|.|...|+-. ...++++.|+++|+++=+|
T Consensus 217 ~~~~pia~dEs~~~~~d~~~~~~~~d~v~~k~~~~GGi~----------------------~a~~i~~~a~~~gi~~~~g 274 (321)
T PRK15129 217 IHPLPICADESCHTRSSLKALKGRYEMVNIKLDKTGGLT----------------------EALALATEARAQGFALMLG 274 (321)
T ss_pred ccCCCEecCCCCCCHHHHHHHHhhCCEEEeCchhhCCHH----------------------HHHHHHHHHHHcCCcEEEe
Confidence 457999999885 44444444566999999999999844 3678999999999999888
Q ss_pred ecc
Q 004907 221 TNH 223 (724)
Q Consensus 221 vN~ 223 (724)
...
T Consensus 275 ~~~ 277 (321)
T PRK15129 275 CML 277 (321)
T ss_pred cch
Confidence 644
No 106
>PRK13753 dihydropteroate synthase; Provisional
Probab=61.51 E-value=2.5e+02 Score=30.70 Aligned_cols=181 Identities=12% Similarity=0.054 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhh
Q 004907 122 EEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIE 200 (724)
Q Consensus 122 ~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~ 200 (724)
+++.|+...++.|++ ..+|+--|- |++..|.+|+++ ++= ||-=+=.. .
T Consensus 60 eE~~Rv~pvI~~l~~------~~~~ISIDT-~~~~va~~al~aGadi--INDVsg~~-d--------------------- 108 (279)
T PRK13753 60 DEIRRIAPLLDALSD------QMHRVSIDS-FQPETQRYALKRGVGY--LNDIQGFP-D--------------------- 108 (279)
T ss_pred HHHHHHHHHHHHHHh------CCCcEEEEC-CCHHHHHHHHHcCCCE--EEeCCCCC-c---------------------
Confidence 356666556666654 257887775 889999999997 663 45422111 1
Q ss_pred hhHHHHHHHHHhcCCcEEEeeccCC--CchH-HHhhcCCCchHHHHHHHHHHHHHHHCCC--CcEEEE-----EecCChh
Q 004907 201 EVFSPLVEKCKKYGRAVRIGTNHGS--LSDR-IMSYYGDSPRGMVESAFEFARICRKLDF--HNFLFS-----MKASNPV 270 (724)
Q Consensus 201 e~~~~vv~~ake~g~~IRIGvN~GS--L~~~-il~~yg~t~~amVeSAle~~~i~e~~~F--~diviS-----~KaSnv~ 270 (724)
..+.+.+.++++|+=+==+.|. -+.. ....|.+--+.+...-.+.++.|++.|. ++|++- -|+.+..
T Consensus 109 ---~~~~~vva~~~~~vVlmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~i~~~~~~Gi~~~~IilDPGiGF~k~k~~~ 185 (279)
T PRK13753 109 ---PALYPDIAEADCRLVVMHSAQRDGIATRTGHLRPEDALDEIVRFFEARVSALRRSGVAADRLILDPGMGFFLSPAPE 185 (279)
T ss_pred ---hHHHHHHHHcCCCEEEEecCCCCCCCCcccCCCcchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCCCCCCChH
Confidence 2355667788888866544331 1111 1122322223455555566888999999 678875 4544544
Q ss_pred HHHHHHHHHHHHhhcCCCCcccccccc------cc-CCCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHH
Q 004907 271 VMVQAYRLLVAEMYVHGWDYPLHLGVT------EA-GEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRL 343 (724)
Q Consensus 271 ~~v~Ayrlla~~m~~~g~dYPLHLGVT------EA-G~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~L 343 (724)
.-.+-.+.|.+-. ..+.||+=+|+. +. |....-|.-.+++...++...=.|-||| ..|+..++.
T Consensus 186 ~n~~ll~~l~~l~--~~~g~PvLvg~SRKsfig~~~~~~~~~R~~~T~a~~~~a~~~Ga~ivRv-------HdV~~~~~a 256 (279)
T PRK13753 186 TSLHVLSNLQKLK--SALGLPLLVSVSRKSFLGATVGLPVKDLGPASLAAELHAIGNGADYVRT-------HAPGDLRSA 256 (279)
T ss_pred HHHHHHHhHHHHH--HhCCCceEEEccHhHHHHHHcCCChhhhhHhHHHHHHHHHHcCCCEEEe-------CCHHHHHHH
Confidence 4444333332221 016899988842 11 2223455666666666555555677775 345554444
Q ss_pred HH
Q 004907 344 AN 345 (724)
Q Consensus 344 l~ 345 (724)
++
T Consensus 257 ~~ 258 (279)
T PRK13753 257 IT 258 (279)
T ss_pred HH
Confidence 44
No 107
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=61.50 E-value=70 Score=33.45 Aligned_cols=138 Identities=16% Similarity=0.145 Sum_probs=81.4
Q ss_pred CCCCCHHHHHHHHHHHHH--------HHHHHHHHhhhcCCCcceeecC--CCCH-----H-----HHHHHhhh-cC--cc
Q 004907 112 NDTKDVAGTVEEVMRIAD--------ACFEIKNSLVQKNYNIPLVADI--HFAP-----S-----VALRVAEC-FD--KI 168 (724)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~--------a~~~I~~~L~~~~~~iPLVADI--HF~~-----~-----lAl~a~~~-vd--ki 168 (724)
....|++..++++.+..- .++.-++ + ...++||+.-+ +|.+ . .+.+|++. ++ .+
T Consensus 33 ~~~~~~~~~~~~a~~~~~~~v~~~p~~~~~~~~-~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al~~Ga~~v~~ 109 (258)
T TIGR01949 33 KGLVDIRKTVNEVAEGGADAVLLHKGIVRRGHR-G--YGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAIRMGADAVSI 109 (258)
T ss_pred CCcCCHHHHHHHHHhcCCCEEEeCcchhhhccc-c--cCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHHHCCCCEEEE
Confidence 345688888888777322 2222222 1 34678888877 7765 1 14467775 65 78
Q ss_pred ccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHH
Q 004907 169 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFE 247 (724)
Q Consensus 169 RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle 247 (724)
|+|.|.-.. .+.+ +.++++.+.|.++|+|+-|-+. -.|. .+. +-...++
T Consensus 110 ~~~~g~~~~------------------~~~~-~~~~~i~~~~~~~g~~liv~~~----------~~Gvh~~~-~~~~~~~ 159 (258)
T TIGR01949 110 HVNVGSDTE------------------WEQI-RDLGMIAEICDDWGVPLLAMMY----------PRGPHIDD-RDPELVA 159 (258)
T ss_pred EEecCCchH------------------HHHH-HHHHHHHHHHHHcCCCEEEEEe----------ccCccccc-ccHHHHH
Confidence 999875211 1223 3477799999999999988221 0010 111 1112233
Q ss_pred H-HHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 248 F-ARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 248 ~-~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
+ ++++.+.|-+=|++|.|. -++..+.+++. +.-|.
T Consensus 160 ~~~~~a~~~GADyikt~~~~-----~~~~l~~~~~~-----~~iPV 195 (258)
T TIGR01949 160 HAARLGAELGADIVKTPYTG-----DIDSFRDVVKG-----CPAPV 195 (258)
T ss_pred HHHHHHHHHCCCEEeccCCC-----CHHHHHHHHHh-----CCCcE
Confidence 4 588888999999988652 25556666665 45555
No 108
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=61.15 E-value=47 Score=36.28 Aligned_cols=71 Identities=15% Similarity=0.253 Sum_probs=46.7
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCcEEEE----EecCChhHHHHHHHHHH
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFS----MKASNPVVMVQAYRLLV 280 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS----~KaSnv~~~v~Ayrlla 280 (724)
.++..++.|+- ||-+.-=|++++.+...|- .. .+.+++.++.+++.||.+|.+. +---+.....+..+.+.
T Consensus 100 ~l~~l~~~Gvn-RiSiGvQS~~~~~L~~lgR~~~---~~~~~~ai~~lr~~g~~~v~iDli~GlPgqt~~~~~~~l~~~~ 175 (350)
T PRK08446 100 WLKGMKNLGVN-RISFGVQSFNEDKLKFLGRIHS---QKQIIKAIENAKKAGFENISIDLIYDTPLDNKKLLKEELKLAK 175 (350)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHcCCCEEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 56777888865 7666667888899999883 22 4567777888899999855443 33334444444444433
No 109
>KOG0560 consensus Sulfite reductase (ferredoxin) [Inorganic ion transport and metabolism]
Probab=60.64 E-value=22 Score=41.58 Aligned_cols=95 Identities=27% Similarity=0.459 Sum_probs=67.5
Q ss_pred hccCCcceeecCCCCcccccc----HHHHHHHHHHHhc--CCC--CcEEEEeeeeecCCCCCCCCceeeecCCCceeEee
Q 004907 617 RMRNTKTEYVSCPSCGRTLFD----LQEISAEIREKTS--HLP--GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLY 688 (724)
Q Consensus 617 r~R~~kte~ISCPsCGRTlfD----Lq~~~~~Ik~~t~--hLk--gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly 688 (724)
++|.+..--+.-|+||-.... +-+++.++++-+. .|+ .+.+-+-||- ||=+----||+|.||-+|+..++.
T Consensus 492 ~L~~ss~AC~g~p~CglAi~Eser~lpkii~~ve~~~e~vgl~~dsIvmr~TGCP-NgCsrp~vaeig~vGkapnty~~~ 570 (638)
T KOG0560|consen 492 GLRLSSVACVGLPTCGLAIAESERRLPKIITEVERMFEEVGLPRDSIVMRMTGCP-NGCSRPWVAEIGLVGKAPNTYNLM 570 (638)
T ss_pred hhhhhhhcccCCCcchhHHHHHhhchhHHHHHHHHHHHHhCCCCCceEEEeccCC-CCCCcchhhheeecccCCcceeee
Confidence 455555444445889964322 4567777777543 344 4788888995 888888899999999999999998
Q ss_pred ecceee--------eecCChhHHHHHHHHHHH
Q 004907 689 VGKTVV--------KRGIAMEQATDALIQLIK 712 (724)
Q Consensus 689 ~gke~V--------~~~Ipeeeavd~Li~lIk 712 (724)
-|+..+ ++++..+++.+-+..|++
T Consensus 571 lgG~p~~~~l~k~~~~~vkd~ei~~i~kpl~k 602 (638)
T KOG0560|consen 571 LGGGPVGQRLNKLYGRIVKDSEIGEIYKPLFK 602 (638)
T ss_pred cCCcchHHHHHHHHhccccHHHHHHHHhhhhh
Confidence 877654 456888888876555554
No 110
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=60.50 E-value=42 Score=36.77 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=67.0
Q ss_pred ecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHh
Q 004907 97 AIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVA 162 (724)
Q Consensus 97 ~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~ 162 (724)
.+|.+..+.|= .| -.-|.+.+++=+++|++ .+...++ +++.+++|+.+|=++ +++-+...+
T Consensus 159 ~~G~~~~l~vD--aN-~~w~~~~A~~~~~~l~~~~l~~iEeP~~~~d~~~~~~--L~~~~~~pia~gE~~~~~~~~~~~i 233 (361)
T cd03322 159 KFGFEFHLLHD--VH-HRLTPNQAARFGKDVEPYRLFWMEDPTPAENQEAFRL--IRQHTATPLAVGEVFNSIWDWQNLI 233 (361)
T ss_pred ccCCCceEEEE--CC-CCCCHHHHHHHHHHhhhcCCCEEECCCCcccHHHHHH--HHhcCCCCEEeccCCcCHHHHHHHH
Confidence 36777777762 23 22455656665666666 2222322 334689999999885 566666666
Q ss_pred h--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 163 E--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 163 ~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+ ++|-+.+.|+-+|.-. ...++++.|+++|+++-++.
T Consensus 234 ~~~a~di~~~d~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h~ 272 (361)
T cd03322 234 QERLIDYIRTTVSHAGGIT----------------------PARKIADLASLYGVRTGWHG 272 (361)
T ss_pred HhCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeeeccC
Confidence 5 4999999999998744 36789999999999997654
No 111
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=60.01 E-value=49 Score=36.16 Aligned_cols=57 Identities=21% Similarity=0.359 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
+.++..++.|+. ||-+.-=|++++++...|... =++.+++.++.+.+.||.+|.+.+
T Consensus 100 e~l~~l~~~G~~-rvsiGvqS~~d~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~v~~dl 156 (374)
T PRK05799 100 EKLKILKSMGVN-RLSIGLQAWQNSLLKYLGRIH--TFEEFLENYKLARKLGFNNINVDL 156 (374)
T ss_pred HHHHHHHHcCCC-EEEEECccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEe
Confidence 367888888864 777666889999999988321 155677778899999998665554
No 112
>TIGR02534 mucon_cyclo muconate and chloromuconate cycloisomerases. This model encompasses muconate cycloisomerase (EC 5.5.1.1) and chloromuconate cycloisomerase (EC 5.5.1.7), enzymes that often overlap in specificity. It excludes more distantly related proteins such as mandelate racemase (5.1.2.2).
Probab=59.69 E-value=49 Score=36.19 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=43.7
Q ss_pred cCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 141 KNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 141 ~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.+++|+.+|=++ +..-+...++ ++|-+.|.|.-+|.-. ...++...|+.+|+++
T Consensus 235 ~~~~~pia~dE~~~~~~~~~~~~~~~~~d~~~~d~~~~GGi~----------------------~~~~i~~lA~~~gi~~ 292 (368)
T TIGR02534 235 RRFNVPIMADESVTGPADALAIAKASAADVFALKTTKSGGLL----------------------ESKKIAAIAEAAGIAL 292 (368)
T ss_pred HhCCCCEEeCcccCCHHHHHHHHHhCCCCEEEEcccccCCHH----------------------HHHHHHHHHHHcCCce
Confidence 3688999999765 4444445544 4999999999998733 3578999999999997
Q ss_pred EEe
Q 004907 218 RIG 220 (724)
Q Consensus 218 RIG 220 (724)
=+|
T Consensus 293 ~~~ 295 (368)
T TIGR02534 293 YGG 295 (368)
T ss_pred eee
Confidence 444
No 113
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=59.50 E-value=33 Score=35.71 Aligned_cols=58 Identities=16% Similarity=0.293 Sum_probs=44.6
Q ss_pred CCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 143 YNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 143 ~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
+++||.+|=++ +..-+...++ ++|-+.+.|...|.-. ...++++.|+++|+++=+
T Consensus 175 ~~~PIa~dEs~~~~~~~~~~~~~~~~d~v~~k~~~~GGit----------------------~~~~i~~~a~~~gi~~~~ 232 (263)
T cd03320 175 AGVPIALDESLRRLDDPLALAAAGALGALVLKPALLGGPR----------------------ALLELAEEARARGIPAVV 232 (263)
T ss_pred cCCCeeeCCccccccCHHHHHhcCCCCEEEECchhcCCHH----------------------HHHHHHHHHHHcCCCEEE
Confidence 78999999664 3333334444 5999999999998744 367899999999999988
Q ss_pred eec
Q 004907 220 GTN 222 (724)
Q Consensus 220 GvN 222 (724)
|..
T Consensus 233 ~~~ 235 (263)
T cd03320 233 SSA 235 (263)
T ss_pred Ecc
Confidence 843
No 114
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=59.10 E-value=34 Score=38.60 Aligned_cols=90 Identities=17% Similarity=0.270 Sum_probs=60.2
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCC---CcceeecCC-CCHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNY---NIPLVADIH-FAPSV 157 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~---~iPLVADIH-F~~~l 157 (724)
+|.+..+.|=- | ..-|.+.+++-+++|++ .+..+++ .+ ++|+.+|=+ |+..-
T Consensus 237 vG~~~~L~vDa--N-~~w~~~~A~~~~~~L~~~~l~~iEEP~~~~d~~~~~~L~~-----~~~~~~iPIa~gEs~~~~~~ 308 (415)
T cd03324 237 IGPDNKLMIDA--N-QRWDVPEAIEWVKQLAEFKPWWIEEPTSPDDILGHAAIRK-----ALAPLPIGVATGEHCQNRVV 308 (415)
T ss_pred cCCCCeEEEEC--C-CCCCHHHHHHHHHHhhccCCCEEECCCCCCcHHHHHHHHH-----hcccCCCceecCCccCCHHH
Confidence 44455555531 2 12345566666666666 4444544 34 699999955 45555
Q ss_pred HHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 158 ALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 158 Al~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+...++ ++|-+.+.|...|.-. .+.++...|..+|+++
T Consensus 309 ~~~ll~~~a~dil~~d~~~~GGit----------------------~~~kia~lA~a~gi~~ 348 (415)
T cd03324 309 FKQLLQAGAIDVVQIDSCRLGGVN----------------------ENLAVLLMAAKFGVPV 348 (415)
T ss_pred HHHHHHcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCeE
Confidence 555554 4999999999999843 3678999999999988
No 115
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=58.90 E-value=65 Score=30.28 Aligned_cols=50 Identities=12% Similarity=0.282 Sum_probs=37.2
Q ss_pred HHHHHHHHHhc-----CCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 004907 203 FSPLVEKCKKY-----GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 270 (724)
Q Consensus 203 ~~~vv~~ake~-----g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 270 (724)
+.++++.+++. +..+.+.+|.+.++++ .++.+.+.|++.+.||+.+.|..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~------------------~~~~l~~~~~~~i~isl~~~~~~ 124 (216)
T smart00729 70 LEELLEAIREILGLADDVEITIETRPGTLTEE------------------LLEALKEAGVNRVSLGVQSGSDE 124 (216)
T ss_pred HHHHHHHHHHhCCCCCCeEEEEEeCcccCCHH------------------HHHHHHHcCCCeEEEecccCCHH
Confidence 55667777766 4678888986666554 55667788998999999988755
No 116
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=58.87 E-value=3.5 Score=43.66 Aligned_cols=20 Identities=50% Similarity=1.036 Sum_probs=15.7
Q ss_pred hccCCcceeecCCCCcccccc
Q 004907 617 RMRNTKTEYVSCPSCGRTLFD 637 (724)
Q Consensus 617 r~R~~kte~ISCPsCGRTlfD 637 (724)
.+|. +=+.+-||.|||.||=
T Consensus 214 ~V~~-~d~iv~CP~CgRILy~ 233 (239)
T COG1579 214 KVRK-KDEIVFCPYCGRILYY 233 (239)
T ss_pred HHhc-CCCCccCCccchHHHh
Confidence 3455 6699999999998773
No 117
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=58.74 E-value=87 Score=32.15 Aligned_cols=107 Identities=13% Similarity=0.132 Sum_probs=59.1
Q ss_pred HHHHHHHhhhcCCCcceee-cCC-------CCH----------HHHHHHhhh--cCccccCCCCCcchhhhhhccccchH
Q 004907 131 CFEIKNSLVQKNYNIPLVA-DIH-------FAP----------SVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDD 190 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVA-DIH-------F~~----------~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytde 190 (724)
+..+++.|.+.|..|+-++ +-| .++ +.++++++. +..||+.++..... .
T Consensus 54 ~~~l~~~l~~~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~-----------~ 122 (284)
T PRK13210 54 RLSLVKAIYETGVRIPSMCLSGHRRFPFGSRDPATRERALEIMKKAIRLAQDLGIRTIQLAGYDVYYE-----------E 122 (284)
T ss_pred HHHHHHHHHHcCCCceEEecccccCcCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCcccccc-----------c
Confidence 4566666677787777553 322 233 233444443 78888743321100 0
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 191 EYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 191 ey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
...+..+++.+.+.++++.|+++|+ +|++ |++. ..+.+.-+.+++++..+-.++.+-+
T Consensus 123 ~~~~~~~~~~~~l~~l~~~a~~~gv--~l~lE~~~~--------------~~~~~~~~~~~l~~~v~~~~~~~~~ 181 (284)
T PRK13210 123 KSEETRQRFIEGLAWAVEQAAAAQV--MLAVEIMDT--------------PFMNSISKWKKWDKEIDSPWLTVYP 181 (284)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhCC--EEEEEecCc--------------cccCCHHHHHHHHHHcCCCceeEEe
Confidence 1123456777888889999999986 4465 3321 1233334455666666666665554
No 118
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=58.21 E-value=38 Score=37.21 Aligned_cols=95 Identities=20% Similarity=0.209 Sum_probs=56.9
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCcEEEeeccC--CC--------chHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG--SL--------SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~IRIGvN~G--SL--------~~~il~~yg~t~~amVeSAle~~~i~e~~~F~divi 262 (724)
.+|++.|.+.|..-.+.|++.|.-. |-+|.| -| ..+--.+||.+.+.=..=++|-++-.++.= ++.|
T Consensus 134 ~eeI~~ii~~f~~aA~~a~~aGfDg-Veih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~--~~~v 210 (337)
T PRK13523 134 KEQIKETVLAFKQAAVRAKEAGFDV-IEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW--DGPL 210 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCE-EEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc--CCCe
Confidence 4677788888888888888887764 344544 33 334455688666555555555555444431 3467
Q ss_pred EEecCChh-----HHHHHHHHHHHHhhcCCCCc
Q 004907 263 SMKASNPV-----VMVQAYRLLVAEMYVHGWDY 290 (724)
Q Consensus 263 S~KaSnv~-----~~v~Ayrlla~~m~~~g~dY 290 (724)
++|-|-.. .+.+-+..+++.+++.|+||
T Consensus 211 ~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~ 243 (337)
T PRK13523 211 FVRISASDYHPGGLTVQDYVQYAKWMKEQGVDL 243 (337)
T ss_pred EEEecccccCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 77776311 13444555666666667775
No 119
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=58.20 E-value=19 Score=38.24 Aligned_cols=57 Identities=25% Similarity=0.286 Sum_probs=42.4
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 270 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 270 (724)
.+++.++.|+++|+++=-| |.|-...+.+ .+.-+|++.|.++||+-|-||-=+-+.+
T Consensus 42 ~l~eki~la~~~~V~v~~G---Gtl~E~~~~q---------~~~~~Yl~~~k~lGf~~IEiS~G~~~i~ 98 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKVYPG---GTLFEIAHSK---------GKFDEYLNECDELGFEAVEISDGSMEIS 98 (237)
T ss_pred HHHHHHHHHHHcCCeEeCC---ccHHHHHHHh---------hhHHHHHHHHHHcCCCEEEEcCCccCCC
Confidence 4788999999999999666 5554333322 2344699999999999999997666544
No 120
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=57.77 E-value=48 Score=35.97 Aligned_cols=56 Identities=18% Similarity=0.179 Sum_probs=44.0
Q ss_pred cCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 141 KNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 141 ~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.+++|+.+|=++ +..-+...++ ++|-|.+.|...|.-. ...++.+.|.++|+++
T Consensus 219 ~~~~~pIa~gE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit----------------------~~~~i~~~A~~~g~~~ 276 (341)
T cd03327 219 KATGIPISTGEHEYTVYGFKRLLEGRAVDILQPDVNWVGGIT----------------------ELKKIAALAEAYGVPV 276 (341)
T ss_pred hcCCCCeEeccCccCHHHHHHHHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCee
Confidence 3688999999654 5665556665 4999999999998744 3678999999999986
Q ss_pred E
Q 004907 218 R 218 (724)
Q Consensus 218 R 218 (724)
=
T Consensus 277 ~ 277 (341)
T cd03327 277 V 277 (341)
T ss_pred c
Confidence 3
No 121
>PRK09989 hypothetical protein; Provisional
Probab=57.31 E-value=87 Score=32.16 Aligned_cols=87 Identities=13% Similarity=0.208 Sum_probs=54.1
Q ss_pred HHHHHHhh-h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe-eccCCCchHHHh
Q 004907 156 SVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG-TNHGSLSDRIMS 232 (724)
Q Consensus 156 ~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG-vN~GSL~~~il~ 232 (724)
+.+++.++ . +..|++.||.+-... + ..+..+.+.+.++++.+.|+++|+.+.+= +|.+-
T Consensus 88 ~~~i~~A~~lg~~~v~v~~g~~~~~~--------~---~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~------- 149 (258)
T PRK09989 88 DLALEYALALNCEQVHVMAGVVPAGE--------D---AERYRAVFIDNLRYAADRFAPHGKRILVEALSPGV------- 149 (258)
T ss_pred HHHHHHHHHhCcCEEEECccCCCCCC--------C---HHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCC-------
Confidence 33444444 3 788899999763211 1 12345667788888999999999877652 22211
Q ss_pred hcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 233 YYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 233 ~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
.+.-++.+.-+..+++++.+-.++.+-+
T Consensus 150 ----~~~~~~~~~~~~~~ll~~v~~~~v~l~l 177 (258)
T PRK09989 150 ----KPHYLFSSQYQALAIVEEVARDNVFIQL 177 (258)
T ss_pred ----CCCCccCCHHHHHHHHHHcCCCCeEEEe
Confidence 0112344555667888888888888877
No 122
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=57.16 E-value=58 Score=36.00 Aligned_cols=54 Identities=19% Similarity=0.353 Sum_probs=35.3
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
.++..|+.|+- ||-+.-=|++++++...|- .. ++.+.+.++.+.+. |.+|.+.+
T Consensus 106 ~L~~l~~~Gvn-rislGvQS~~d~vL~~l~R~~~---~~~~~~ai~~~~~~-~~~v~~dl 160 (380)
T PRK09057 106 RFRGYRAAGVN-RVSLGVQALNDADLRFLGRLHS---VAEALAAIDLAREI-FPRVSFDL 160 (380)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCCCC---HHHHHHHHHHHHHh-CccEEEEe
Confidence 45667778874 7777778899999999983 22 23444455566666 66555544
No 123
>PF07503 zf-HYPF: HypF finger; InterPro: IPR011125 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Proteins of the HypF family are involved in the maturation and regulation of hydrogenase []. In the N terminus they appear to have two zinc finger domains that are similar to those found in the DnaJ chaperone []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3TTD_A 3TSQ_A 3TTC_A 3TSP_A 3TTF_A 3TSU_A.
Probab=57.13 E-value=4.5 Score=31.17 Aligned_cols=18 Identities=28% Similarity=0.757 Sum_probs=11.7
Q ss_pred ccCCcceeecCCCCcccc
Q 004907 618 MRNTKTEYVSCPSCGRTL 635 (724)
Q Consensus 618 ~R~~kte~ISCPsCGRTl 635 (724)
-|..+.++|||+.||..+
T Consensus 14 ~RR~~~~~isC~~CGPr~ 31 (35)
T PF07503_consen 14 NRRFHYQFISCTNCGPRY 31 (35)
T ss_dssp STTTT-TT--BTTCC-SC
T ss_pred CCcccCcCccCCCCCCCE
Confidence 377889999999999863
No 124
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=57.12 E-value=30 Score=36.74 Aligned_cols=125 Identities=18% Similarity=0.216 Sum_probs=74.2
Q ss_pred cCCCCCeEEeeccC--CCCCCHHHHHHHHHHHHH---------HHHHHHHHhhhcCC---------Cccee--e------
Q 004907 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIAD---------ACFEIKNSLVQKNY---------NIPLV--A------ 149 (724)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~~L~~---------a~~~I~~~L~~~~~---------~iPLV--A------ 149 (724)
|||+. +.|+|+.. +|..+.+.+.+++++|.+ .++..-++++++.. .+++. -
T Consensus 20 I~Gd~-v~V~~li~~g~dpH~ye~~p~d~~~l~~Adliv~~G~~le~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 98 (286)
T cd01019 20 IMGGV-GEVEVLVPPGASPHDYELRPSDARKLQEADLVVWIGPDLEAFLDKVLQGRKKGKVLTLAKLIDLKTLEDGASHG 98 (286)
T ss_pred HcCCC-cceEEecCCCCCccCCCCCHHHHHHHHhCCEEEEeCCCchHHHHHHHHhcCcCceEecccCCcccccccccccc
Confidence 66664 67778754 677999999999999999 23222222222110 11221 0
Q ss_pred ---------------------cCC--CCHHHHHHHhhh-cCc-cccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHH
Q 004907 150 ---------------------DIH--FAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 204 (724)
Q Consensus 150 ---------------------DIH--F~~~lAl~a~~~-vdk-iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~ 204 (724)
|=| ++|+.+...++. .++ +++.|.|=..-+++ -+.|.++|+.++++.+
T Consensus 99 ~~~h~~~~~~~~~~~~~~~~~dPHiWldp~n~~~~a~~I~~~L~~~dP~~~~~y~~N-------~~~~~~~L~~l~~~~~ 171 (286)
T cd01019 99 DHEHDHEHAHGEHDGHEEGGLDPHLWLSPENAAEVAQAVAEKLSALDPDNAATYAAN-------LEAFNARLAELDATIK 171 (286)
T ss_pred cccccccccccccCCCCCCCCCCccCCCHHHHHHHHHHHHHHHHHHCchhHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 101 456677777776 555 45899883211111 4568888888888888
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHhhcC
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 235 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~~yg 235 (724)
..+..++.+ . +=+-|.++. .+.++||
T Consensus 172 ~~~~~~~~~--~--~v~~H~af~-Yl~~~~g 197 (286)
T cd01019 172 ERLAPVKTK--P--FFVFHDAYG-YFEKRYG 197 (286)
T ss_pred HHhhccCCC--e--EEEecccHH-HHHHHcC
Confidence 777765433 2 234666664 5666665
No 125
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=56.91 E-value=55 Score=35.88 Aligned_cols=92 Identities=17% Similarity=0.220 Sum_probs=54.7
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhc
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYV 285 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~ 285 (724)
.++..++.|+. ||-+--=|.++++++.+|... -++.+++.++.+.+.||.++.+.+=.-=+..+.+..+.-.+.+.+
T Consensus 110 ~l~~l~~~G~~-rvslGvQS~~~~~L~~l~R~~--s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~ 186 (375)
T PRK05628 110 FFAALRAAGFT-RVSLGMQSAAPHVLAVLDRTH--TPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALE 186 (375)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCCC--CHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHh
Confidence 45667777864 777767788899999998321 234566677788899998887776332123333333333333333
Q ss_pred CCCC----ccccccccccCCCC
Q 004907 286 HGWD----YPLHLGVTEAGEGE 303 (724)
Q Consensus 286 ~g~d----YPLHLGVTEAG~~~ 303 (724)
.+.+ |||.+ +.|+..
T Consensus 187 l~~~~i~~y~l~~---~~gT~l 205 (375)
T PRK05628 187 AGVDHVSAYALIV---EDGTAL 205 (375)
T ss_pred cCCCEEEeeeeec---CCCChH
Confidence 3332 66653 555543
No 126
>PRK05660 HemN family oxidoreductase; Provisional
Probab=56.30 E-value=54 Score=36.31 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=43.0
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEe
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 265 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K 265 (724)
.++..|+.|+- ||-+.-=|+++++++..|.. .-++.+++.++.+.+.||.+|.+.+=
T Consensus 109 ~l~~Lk~~Gv~-risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~~~~~G~~~v~~dli 165 (378)
T PRK05660 109 RFVGYQRAGVN-RISIGVQSFSEEKLKRLGRI--HGPDEAKRAAKLAQGLGLRSFNLDLM 165 (378)
T ss_pred HHHHHHHcCCC-EEEeccCcCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee
Confidence 46777888975 88888889999999998732 12456677788889999987655553
No 127
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=55.82 E-value=1e+02 Score=34.69 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=76.0
Q ss_pred HHHHHHHhhhcCCCcceeecC-------------CCCH---HHHH----HHh----hh-cCccccCCCCCcchhhhhhcc
Q 004907 131 CFEIKNSLVQKNYNIPLVADI-------------HFAP---SVAL----RVA----EC-FDKIRVNPGNFADRRAQFEQL 185 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVADI-------------HF~~---~lAl----~a~----~~-vdkiRINPGNig~~~k~f~~~ 185 (724)
+.+|++.|.+.|..++.|+=- +-|+ +.|+ .++ +. +..|-+-||-.|.
T Consensus 70 ~~~lk~~L~~~GL~v~~v~~nl~~~~~~~~g~las~d~~vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~-------- 141 (382)
T TIGR02631 70 VRRFKKALDETGLKVPMVTTNLFSHPVFKDGGFTSNDRSVRRYALRKVLRNMDLGAELGAETYVVWGGREGA-------- 141 (382)
T ss_pred HHHHHHHHHHhCCeEEEeeccccCCccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCC--------
Confidence 467888888888887765421 2234 2222 233 23 7778888886653
Q ss_pred ccc-hHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCc-EEEE
Q 004907 186 EYT-DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHN-FLFS 263 (724)
Q Consensus 186 ~Yt-deey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~d-iviS 263 (724)
.|+ ..+|.+.+++..+.+.++.+.|+++|.-|||++=. ++.+ +.+.-++.++-+.++++++.|-.+ +.+-
T Consensus 142 ~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~GV~laLEp--~p~~------~~~~~ll~T~~~al~li~~v~~pn~vgl~ 213 (382)
T TIGR02631 142 EYDGAKDVRAALDRMREALNLLAAYAEDQGYGLRFALEP--KPNE------PRGDILLPTVGHALAFIETLERPELFGLN 213 (382)
T ss_pred cCccccCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcc--CCCC------CCcceecCCHHHHHHHHHHcCCccceeEE
Confidence 233 34578889999999999999999988778888722 1110 112235666666777778888766 4565
Q ss_pred E
Q 004907 264 M 264 (724)
Q Consensus 264 ~ 264 (724)
+
T Consensus 214 l 214 (382)
T TIGR02631 214 P 214 (382)
T ss_pred E
Confidence 4
No 128
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=55.53 E-value=54 Score=35.88 Aligned_cols=56 Identities=9% Similarity=-0.012 Sum_probs=45.3
Q ss_pred CCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 143 YNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 143 ~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
+.+||.+|=++ +..-+...++ ++|-+.+.+...|.-. ...++.+.|+.+|+++=+
T Consensus 234 ~~iPIa~gE~~~~~~~~~~li~~~a~div~~d~~~~GGit----------------------~~~~ia~~A~a~gi~~~~ 291 (352)
T cd03328 234 AGMDIAAGEYAYTLAYFRRLLEAHAVDVLQADVTRCGGVT----------------------GFLQAAALAAAHHVDLSA 291 (352)
T ss_pred CCCCEEecccccCHHHHHHHHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeecc
Confidence 67999999864 6666667766 5999999999998743 367899999999999865
Q ss_pred e
Q 004907 220 G 220 (724)
Q Consensus 220 G 220 (724)
+
T Consensus 292 h 292 (352)
T cd03328 292 H 292 (352)
T ss_pred C
Confidence 4
No 129
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.25 E-value=52 Score=36.67 Aligned_cols=101 Identities=19% Similarity=0.219 Sum_probs=62.5
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCcE-EEeeccCCCchHH--------HhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRAV-RIGTNHGSLSDRI--------MSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 263 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~I-RIGvN~GSL~~~i--------l~~yg~t~~amVeSAle~~~i~e~~~F~diviS 263 (724)
.+|++.|.+.|..-.+.|++.|--- =|=.-||-|=..+ -.+||.+.+.=..=++|-++-.++.==.|+.|.
T Consensus 136 ~~eI~~ii~~f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~ 215 (361)
T cd04747 136 EADIDDVIAAFARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPII 215 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 4567777788888888888877542 2333466443333 355887666666666777776666422567888
Q ss_pred EecCCh--h-------HHHHHHHHHHHHhhcCCCCccccc
Q 004907 264 MKASNP--V-------VMVQAYRLLVAEMYVHGWDYPLHL 294 (724)
Q Consensus 264 ~KaSnv--~-------~~v~Ayrlla~~m~~~g~dYPLHL 294 (724)
+|-|-- . .+.+-...+++.+++.|+|| +|+
T Consensus 216 vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~-i~v 254 (361)
T cd04747 216 LRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDI-FHC 254 (361)
T ss_pred EEECcccccccccCCCCCHHHHHHHHHHHHHcCCCE-EEe
Confidence 888720 0 12233345556667778899 886
No 130
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=55.02 E-value=60 Score=35.63 Aligned_cols=55 Identities=18% Similarity=0.294 Sum_probs=40.0
Q ss_pred cCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 141 KNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 141 ~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.+++|+.+|=.+ ...-....++ ++|-+.|.|..+|+ +.++.+.|.++|+++
T Consensus 181 ~~~~vPIA~DEs~~~~~d~~~l~~~~a~dvi~ik~~~~GG-------------------------it~~lkiA~~~gi~v 235 (327)
T PRK02901 181 RRVGVPIAADESIRRAEDPLRVARAGAADVAVLKVAPLGG-------------------------VRAALDIAEQIGLPV 235 (327)
T ss_pred HhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcchhCC-------------------------HHHHHHHHHHcCCcE
Confidence 3688999999653 3332333343 59999999999997 345666789999888
Q ss_pred EEe
Q 004907 218 RIG 220 (724)
Q Consensus 218 RIG 220 (724)
=++
T Consensus 236 ~v~ 238 (327)
T PRK02901 236 VVS 238 (327)
T ss_pred EEe
Confidence 665
No 131
>PTZ00081 enolase; Provisional
Probab=54.71 E-value=56 Score=37.52 Aligned_cols=74 Identities=14% Similarity=0.155 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhcCCCcceeecCC--CCHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 205 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIH--F~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 205 (724)
++.+++++ -+..+||++|=. .|++.+..+++. ++.+.|-|..+|.-. ...+
T Consensus 313 g~~~Lt~~---lg~~i~IvgDE~~~tn~~~l~~~I~~~aad~i~iKvnqiGGIT----------------------e~l~ 367 (439)
T PTZ00081 313 AYAKLTAA---IGQKVQIVGDDLLVTNPTRIKKAIEKKACNALLLKVNQIGTVT----------------------EAIE 367 (439)
T ss_pred HHHHHHHh---hCCCceEEcCCcccCCHHHHHHHHHhCCCCEEEeccccccCHH----------------------HHHH
Confidence 55566553 234799999954 578888888884 999999999999744 2567
Q ss_pred HHHHHHhcCCcEEEeeccCCCch
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSD 228 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~ 228 (724)
+++.|+++|+++=|+--+|.-++
T Consensus 368 ~a~lA~~~Gi~~iishrsgETed 390 (439)
T PTZ00081 368 AAKLAQKNGWGVMVSHRSGETED 390 (439)
T ss_pred HHHHHHHcCCcEEEeCCCchhHH
Confidence 99999999999988766665443
No 132
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=54.51 E-value=1.4e+02 Score=32.33 Aligned_cols=148 Identities=11% Similarity=0.167 Sum_probs=0.0
Q ss_pred CCCeEEeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC-cceeecCCCC----HHHHHHHhhh-cCccccCCCC
Q 004907 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYN-IPLVADIHFA----PSVALRVAEC-FDKIRVNPGN 174 (724)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~a~~~I~~~L~~~~~~-iPLVADIHF~----~~lAl~a~~~-vdkiRINPGN 174 (724)
+.||-+|--..+-... .....+...+..+.+ +++ +|++ +|.| +.....|++. ++.|=|-.-+
T Consensus 40 ~~PvIl~~~~~~~~~~-----~~~~~~~~~~~~~a~-----~~~~vpv~--lhlDH~~~~e~i~~ai~~Gf~sVmid~s~ 107 (282)
T TIGR01859 40 NSPVIIQVSEGAIKYM-----GGYKMAVAMVKTLIE-----RMSIVPVA--LHLDHGSSYESCIKAIKAGFSSVMIDGSH 107 (282)
T ss_pred CCCEEEEcCcchhhcc-----CcHHHHHHHHHHHHH-----HCCCCeEE--EECCCCCCHHHHHHHHHcCCCEEEECCCC
Q ss_pred CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE--EeeccCCCchHHHh--hcCCCchHHHHHHHHHHH
Q 004907 175 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR--IGTNHGSLSDRIMS--YYGDSPRGMVESAFEFAR 250 (724)
Q Consensus 175 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR--IGvN~GSL~~~il~--~yg~t~~amVeSAle~~~ 250 (724)
....+. -+..+++++.|+.+|+.+= ||. .|.-++.+.. ..-.+|+...+..
T Consensus 108 l~~~en-------------------i~~t~~v~~~a~~~gv~Ve~ElG~-~gg~ed~~~g~~~~~t~~eea~~f~----- 162 (282)
T TIGR01859 108 LPFEEN-------------------LALTKKVVEIAHAKGVSVEAELGT-LGGIEDGVDEKEAELADPDEAEQFV----- 162 (282)
T ss_pred CCHHHH-------------------HHHHHHHHHHHHHcCCEEEEeeCC-CcCccccccccccccCCHHHHHHHH-----
Q ss_pred HHHHCCCCcEEEE------EecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 251 ICRKLDFHNFLFS------MKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 251 i~e~~~F~diviS------~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
++.|-+-+.+| +-...+..-++-.+.+.++ ++.||
T Consensus 163 --~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~-----~~iPl 203 (282)
T TIGR01859 163 --KETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKEL-----TNIPL 203 (282)
T ss_pred --HHHCcCEEeeccCccccccCCCCccCHHHHHHHHHH-----hCCCE
No 133
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=54.27 E-value=60 Score=36.76 Aligned_cols=87 Identities=13% Similarity=0.199 Sum_probs=54.1
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhh
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 284 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~ 284 (724)
+.++..++.|+. ||-+.-=|+++++++.++.. .-.+.+++-++.+.+.||.++.+.+=.-=+..+.+..+...+...
T Consensus 152 e~l~~l~~aG~~-risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~~l~~~~ 228 (453)
T PRK09249 152 EMLDALRELGFN-RLSLGVQDFDPEVQKAVNRI--QPFEFTFALVEAARELGFTSINIDLIYGLPKQTPESFARTLEKVL 228 (453)
T ss_pred HHHHHHHHcCCC-EEEECCCCCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCHHHHHHHHHHHH
Confidence 356777788863 66666677889999998732 123456677888899999888777654434444444444444333
Q ss_pred cCCCCcccccccc
Q 004907 285 VHGWDYPLHLGVT 297 (724)
Q Consensus 285 ~~g~dYPLHLGVT 297 (724)
+.+ |=|+.+.
T Consensus 229 ~l~---~~~i~~y 238 (453)
T PRK09249 229 ELR---PDRLAVF 238 (453)
T ss_pred hcC---CCEEEEc
Confidence 333 3455544
No 134
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=54.16 E-value=83 Score=32.58 Aligned_cols=80 Identities=14% Similarity=0.235 Sum_probs=52.1
Q ss_pred cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHH
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 244 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeS 244 (724)
+..+++.||+.... ..++..+...+.++++++.|+++|+.+-|=. ++.- ...++.+
T Consensus 99 ~~~v~~~~g~~~~~------------~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn-~~~~-----------~~~~~~t 154 (279)
T cd00019 99 IRLLVFHPGSYLGQ------------SKEEGLKRVIEALNELIDKAETKGVVIALET-MAGQ-----------GNEIGSS 154 (279)
T ss_pred CCEEEECCCCCCCC------------CHHHHHHHHHHHHHHHHHhccCCCCEEEEeC-CCCC-----------CCCCCCC
Confidence 88888999976421 1234446667788889999999987554432 2211 1134556
Q ss_pred HHHHHHHHHHCC-CCcEEEEEecCC
Q 004907 245 AFEFARICRKLD-FHNFLFSMKASN 268 (724)
Q Consensus 245 Ale~~~i~e~~~-F~diviS~KaSn 268 (724)
+-+..+++++.| -.++.+-+=..|
T Consensus 155 ~~~~~~li~~v~~~~~~g~~lD~~h 179 (279)
T cd00019 155 FEELKEIIDLIKEKPRVGVCIDTCH 179 (279)
T ss_pred HHHHHHHHHhcCCCCCeEEEEEhhh
Confidence 667788888888 777777774444
No 135
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=54.12 E-value=76 Score=35.91 Aligned_cols=72 Identities=11% Similarity=0.214 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCcEEEE----EecCChhHHHHHHHHH
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFS----MKASNPVVMVQAYRLL 279 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS----~KaSnv~~~v~Ayrll 279 (724)
+.++..|+.|+ .||-+.-=|+++++++.++. .. .+.+.+.++.|.+.||.++-++ +---+...+.+..+.+
T Consensus 152 e~l~~lk~~G~-~risiGvqS~~~~~l~~l~r~~~---~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~e~~~~tl~~~ 227 (455)
T TIGR00538 152 DVIDALRDEGF-NRLSFGVQDFNKEVQQAVNRIQP---EEMIFELMNHAREAGFTSINIDLIYGLPKQTKESFAKTLEKV 227 (455)
T ss_pred HHHHHHHHcCC-CEEEEcCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEEeeCCCCCHHHHHHHHHHH
Confidence 35677777885 47777778899999999873 22 4566777888999999755444 4444444444444443
Q ss_pred H
Q 004907 280 V 280 (724)
Q Consensus 280 a 280 (724)
.
T Consensus 228 ~ 228 (455)
T TIGR00538 228 A 228 (455)
T ss_pred H
Confidence 3
No 136
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=53.90 E-value=1.3e+02 Score=30.59 Aligned_cols=84 Identities=8% Similarity=0.063 Sum_probs=55.7
Q ss_pred cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec-cCCCchHHHhhcCCCchHHHH
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN-HGSLSDRIMSYYGDSPRGMVE 243 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN-~GSL~~~il~~yg~t~~amVe 243 (724)
+..||+.+|-.-.. ..+++..+...+.++++++.|+++|+.| ++- +.- + +.|..++.
T Consensus 98 ~~~i~~~~g~~~~~-----------~~~~~~~~~~~~~l~~l~~~A~~~gi~l--~lE~~~~--------~-~~~~~~l~ 155 (254)
T TIGR03234 98 CPQVNCLAGKRPAG-----------VSPEEARATLVENLRYAADALDRIGLTL--LIEPINS--------F-DMPGFFLT 155 (254)
T ss_pred CCEEEECcCCCCCC-----------CCHHHHHHHHHHHHHHHHHHHHhcCCEE--EEEECCc--------c-cCCCChhc
Confidence 77888888743211 1133445666778899999999999655 551 110 0 22334678
Q ss_pred HHHHHHHHHHHCCCCcEEEEEecCChh
Q 004907 244 SAFEFARICRKLDFHNFLFSMKASNPV 270 (724)
Q Consensus 244 SAle~~~i~e~~~F~diviS~KaSnv~ 270 (724)
++-+.++++++.+-.++.+.+=.++..
T Consensus 156 t~~~~~~li~~v~~~~~~i~~D~~h~~ 182 (254)
T TIGR03234 156 TTEQALAVIDDVGRENLKLQYDLYHMQ 182 (254)
T ss_pred CHHHHHHHHHHhCCCCEeEeeehhhhh
Confidence 888889999999988888888555433
No 137
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=53.21 E-value=70 Score=32.45 Aligned_cols=72 Identities=19% Similarity=0.213 Sum_probs=45.0
Q ss_pred hhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhH
Q 004907 196 LQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVV 271 (724)
Q Consensus 196 le~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~ 271 (724)
.+.+-+++.++++.||++|..++++.-..+- + ++ +-.++.++.+.+.|.+.| +++-| .|..
T Consensus 103 ~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~-------~--~~----~~~~~~~~~~~~~g~~~i--~l~Dt~G~~~P~~ 167 (237)
T PF00682_consen 103 REEALERIEEAVKYAKELGYEVAFGCEDASR-------T--DP----EELLELAEALAEAGADII--YLADTVGIMTPED 167 (237)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEETTTGG-------S--SH----HHHHHHHHHHHHHT-SEE--EEEETTS-S-HHH
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCcccccc-------c--cH----HHHHHHHHHHHHcCCeEE--EeeCccCCcCHHH
Confidence 3445556778999999999999888754432 1 23 344567777777788764 56644 3444
Q ss_pred HHHHHHHHHHH
Q 004907 272 MVQAYRLLVAE 282 (724)
Q Consensus 272 ~v~Ayrlla~~ 282 (724)
+-+-++.+.+.
T Consensus 168 v~~lv~~~~~~ 178 (237)
T PF00682_consen 168 VAELVRALREA 178 (237)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 44555555554
No 138
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=52.98 E-value=90 Score=32.18 Aligned_cols=98 Identities=21% Similarity=0.289 Sum_probs=65.6
Q ss_pred CCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcC
Q 004907 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFD 166 (724)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vd 166 (724)
..||.+|-. ..|.+..++|.++|.+ +++.|++ |.+++ |++=|=-=|+..-|+.|+++-.
T Consensus 51 ~~~v~~qv~----~~~~e~~i~~a~~l~~~~~~~~iKIP~T~~gl~ai~~-L~~~g--i~v~~T~V~s~~Qa~~Aa~AGA 123 (211)
T cd00956 51 DGPVSAQVV----STDAEGMVAEARKLASLGGNVVVKIPVTEDGLKAIKK-LSEEG--IKTNVTAIFSAAQALLAAKAGA 123 (211)
T ss_pred CCCEEEEEE----eCCHHHHHHHHHHHHHhCCCEEEEEcCcHhHHHHHHH-HHHcC--CceeeEEecCHHHHHHHHHcCC
Confidence 458999984 5789999999999988 6777765 55565 6666666799999999999833
Q ss_pred ccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 167 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 167 kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
.+ |.|- +|- .++ ...... +.++++.+.++.+|.+.+|=+
T Consensus 124 ~y-vsP~-vgR----~~~------~g~dg~----~~i~~i~~~~~~~~~~tkil~ 162 (211)
T cd00956 124 TY-VSPF-VGR----IDD------LGGDGM----ELIREIRTIFDNYGFDTKILA 162 (211)
T ss_pred CE-EEEe-cCh----Hhh------cCCCHH----HHHHHHHHHHHHcCCCceEEe
Confidence 33 4441 111 000 011122 245678999999998877644
No 139
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=52.33 E-value=1.9e+02 Score=31.00 Aligned_cols=123 Identities=20% Similarity=0.268 Sum_probs=79.8
Q ss_pred CCCcc-eeecCCCC-HHH--------HHHHhh-h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 142 NYNIP-LVADIHFA-PSV--------ALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 142 ~~~iP-LVADIHF~-~~l--------Al~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
+.+.| ||||+-|. |.- |...++ . ++.|-|--| . ...+.|++
T Consensus 70 ~~~~p~viaD~~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~-----~----------------------~~~~~I~a 122 (254)
T cd06557 70 GAPRALVVADMPFGSYQTSPEQALRNAARLMKEAGADAVKLEGG-----A----------------------EVAETIRA 122 (254)
T ss_pred cCCCCeEEEeCCCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----H----------------------HHHHHHHH
Confidence 78899 99999876 322 334444 4 666655443 1 24567788
Q ss_pred HHhcCCcEE--EeeccCCCchHHHhhc---CCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhh
Q 004907 210 CKKYGRAVR--IGTNHGSLSDRIMSYY---GDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 284 (724)
Q Consensus 210 ake~g~~IR--IGvN~GSL~~~il~~y---g~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~ 284 (724)
+.+.|+|+= ||.|.=|-... ..| |.|. +-.+.+++-++.+++.|=+=|++-+ ++. +.-+.++++
T Consensus 123 l~~agipV~gHiGL~pq~~~~~--gg~~~~grt~-~~a~~~i~ra~a~~~AGA~~i~lE~----v~~--~~~~~i~~~-- 191 (254)
T cd06557 123 LVDAGIPVMGHIGLTPQSVNQL--GGYKVQGKTE-EEAERLLEDALALEEAGAFALVLEC----VPA--ELAKEITEA-- 191 (254)
T ss_pred HHHcCCCeeccccccceeeecc--CCceeccCCH-HHHHHHHHHHHHHHHCCCCEEEEcC----CCH--HHHHHHHHh--
Confidence 889998864 67765554321 112 2344 4469999999999999999999987 332 456777777
Q ss_pred cCCCCccccccccccCCCCCCch
Q 004907 285 VHGWDYPLHLGVTEAGEGEDGRM 307 (724)
Q Consensus 285 ~~g~dYPLHLGVTEAG~~~~G~I 307 (724)
.+-|+ +|+- ||.+-||-|
T Consensus 192 ---v~iP~-igiG-aG~~~dgqv 209 (254)
T cd06557 192 ---LSIPT-IGIG-AGPDCDGQV 209 (254)
T ss_pred ---CCCCE-EEec-cCCCCCcee
Confidence 66664 3432 666666654
No 140
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.01 E-value=71 Score=33.99 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=60.6
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCchHH--------HhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRI--------MSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 263 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~i--------l~~yg~t~~amVeSAle~~~i~e~~~F~diviS 263 (724)
.+|++.|.+.|..-.+.|++.|.- |=|=..||-|-..+ -.+||.+.+.-..-.+|-++-.++.==.++.|+
T Consensus 133 ~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~ 212 (327)
T cd02803 133 KEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVG 212 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEE
Confidence 356677777777777888877654 22333456552222 346887666666666777776665311578999
Q ss_pred EecCChh-----HHHHHHHHHHHHhhcCCCCccccc
Q 004907 264 MKASNPV-----VMVQAYRLLVAEMYVHGWDYPLHL 294 (724)
Q Consensus 264 ~KaSnv~-----~~v~Ayrlla~~m~~~g~dYPLHL 294 (724)
+|-|-.. .+.+-...+++++.+.|.|| +|+
T Consensus 213 vris~~~~~~~g~~~~e~~~la~~l~~~G~d~-i~v 247 (327)
T cd02803 213 VRLSADDFVPGGLTLEEAIEIAKALEEAGVDA-LHV 247 (327)
T ss_pred EEechhccCCCCCCHHHHHHHHHHHHHcCCCE-EEe
Confidence 9988211 12344455666666677765 443
No 141
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=51.83 E-value=1.3e+02 Score=32.44 Aligned_cols=95 Identities=12% Similarity=0.139 Sum_probs=61.2
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHH
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 281 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~ 281 (724)
.|.++++.++++|+.+-|=+|.--|++ +.++.+.+.|++.|.||+.+.+... |..+
T Consensus 69 ~~~~ii~~~~~~g~~~~l~TNG~ll~~------------------e~~~~L~~~g~~~v~iSldg~~~e~----~d~~-- 124 (358)
T TIGR02109 69 DLVELVAHARRLGLYTNLITSGVGLTE------------------ARLDALADAGLDHVQLSFQGVDEAL----ADRI-- 124 (358)
T ss_pred cHHHHHHHHHHcCCeEEEEeCCccCCH------------------HHHHHHHhCCCCEEEEeCcCCCHHH----HHHh--
Confidence 467899999999988878776333332 2455667889999999999988542 2111
Q ss_pred HhhcCCCCccccccccccCCCCCCchhhHH-HHHHHhhcCCCceeEEecCCCCcccchH
Q 004907 282 EMYVHGWDYPLHLGVTEAGEGEDGRMKSAI-GIGTLLQDGLGDTIRVSLTEPPEKEIDP 339 (724)
Q Consensus 282 ~m~~~g~dYPLHLGVTEAG~~~~G~IKSai-GiG~LL~~GIGDTIRVSLT~dP~~EV~v 339 (724)
+ |..|.-+.++ +|-.|..-|+.=+|++-+|..-..|++-
T Consensus 125 r-------------------g~~g~f~~v~~~i~~l~~~g~~v~v~~vv~~~N~~~l~~ 164 (358)
T TIGR02109 125 A-------------------GYKNAFEQKLAMARAVKAAGLPLTLNFVIHRHNIDQIPE 164 (358)
T ss_pred c-------------------CCccHHHHHHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Confidence 1 2223332222 5566777788766777777766666653
No 142
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=51.62 E-value=16 Score=33.47 Aligned_cols=48 Identities=23% Similarity=0.383 Sum_probs=35.3
Q ss_pred ceeecCCCCccccccHHHHHHHHHHHhcCC-CCcEEEEeeeeecCCCCC
Q 004907 623 TEYVSCPSCGRTLFDLQEISAEIREKTSHL-PGVSIAIMGCIVNGPGEM 670 (724)
Q Consensus 623 te~ISCPsCGRTlfDLq~~~~~Ik~~t~hL-kgvkIAVMGCIVNGPGEm 670 (724)
.+.|--=||+=+.---++...+|++....- |+.+|.|+||.+.--+|.
T Consensus 37 AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~GC~aq~~~~~ 85 (98)
T PF00919_consen 37 ADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTGCMAQRYGEE 85 (98)
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEeCccccChHH
Confidence 456666699888555666666777666554 789999999999987743
No 143
>cd03314 MAL Methylaspartate ammonia lyase (3-methylaspartase, MAL) is a homodimeric enzyme, catalyzing the magnesium-dependent reversible alpha,beta-elimination of ammonia from L-threo-(2S,3S)-3-methylaspartic acid to mesaconic acid. This reaction is part of the main catabolic pathway for glutamate. MAL belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=51.27 E-value=52 Score=36.85 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=50.6
Q ss_pred HHHHHhhhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 133 EIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 133 ~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
++++++.++++.+|+++|=+. +..-+..+++ ++|-+.+.+...|.-. ...++.+.
T Consensus 250 ~Lr~~~~~~~~~iPIa~dEs~~t~~d~~~li~~~a~div~~kl~k~GGIt----------------------~a~kia~l 307 (369)
T cd03314 250 ALRAELDRRGVGVRIVADEWCNTLEDIRDFADAGAAHMVQIKTPDLGGID----------------------NTIDAVLY 307 (369)
T ss_pred HHHHHhhcCCCCceEEecCCcCCHHHHHHHHHhCCCCEEEecchhcCCHH----------------------HHHHHHHH
Confidence 444433335589999999884 4555556665 4999999999999844 36789999
Q ss_pred HHhcCCcEEEee
Q 004907 210 CKKYGRAVRIGT 221 (724)
Q Consensus 210 ake~g~~IRIGv 221 (724)
|..+|+++=+|-
T Consensus 308 A~a~Gi~~~~h~ 319 (369)
T cd03314 308 CKEHGVGAYLGG 319 (369)
T ss_pred HHHcCCcEEEeC
Confidence 999999997774
No 144
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=51.00 E-value=95 Score=33.75 Aligned_cols=74 Identities=20% Similarity=0.334 Sum_probs=49.4
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCchHHH--------hhcCCCchHHHHHHHHHHHHHHH-CCCCcEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRK-LDFHNFLF 262 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il--------~~yg~t~~amVeSAle~~~i~e~-~~F~divi 262 (724)
.+|+++|.+.|..-.+.|++.|.- |=|=.-||.|-..++ .+||.+.+.=..-.+|-++-.++ .| +++.|
T Consensus 141 ~~eI~~~i~~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG-~d~~v 219 (338)
T cd04733 141 EEEIEDVIDRFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVG-PGFPV 219 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcC-CCCeE
Confidence 467778888888888888888874 333333454433333 46887666666666777765554 34 67899
Q ss_pred EEecC
Q 004907 263 SMKAS 267 (724)
Q Consensus 263 S~KaS 267 (724)
++|.|
T Consensus 220 ~vris 224 (338)
T cd04733 220 GIKLN 224 (338)
T ss_pred EEEEc
Confidence 99987
No 145
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=50.50 E-value=79 Score=34.55 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=42.8
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCcEEEEEe
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFSMK 265 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS~K 265 (724)
.++..|+.|+ -||.+.-=|+++++++..|. .. .+.+++.++.+.+.||.++.+.+=
T Consensus 102 ~l~~l~~~Gv-~risiGvqS~~~~~l~~lgR~~~---~~~~~~ai~~l~~~G~~~v~~dli 158 (360)
T TIGR00539 102 WCKGLKGAGI-NRLSLGVQSFRDDKLLFLGRQHS---AKNIAPAIETALKSGIENISLDLM 158 (360)
T ss_pred HHHHHHHcCC-CEEEEecccCChHHHHHhCCCCC---HHHHHHHHHHHHHcCCCeEEEecc
Confidence 5677888885 58888888999999999973 22 566777788889999987655543
No 146
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=50.03 E-value=5.8 Score=32.31 Aligned_cols=24 Identities=33% Similarity=0.769 Sum_probs=13.3
Q ss_pred cCCCCccccccH---HHHHHHHHHHhcC
Q 004907 627 SCPSCGRTLFDL---QEISAEIREKTSH 651 (724)
Q Consensus 627 SCPsCGRTlfDL---q~~~~~Ik~~t~h 651 (724)
.||-|||. ||= ++++++.+..+..
T Consensus 22 ~CPlC~r~-l~~e~~~~li~~~~~~i~~ 48 (54)
T PF04423_consen 22 CCPLCGRP-LDEEHRQELIKKYKSEIEE 48 (54)
T ss_dssp E-TTT--E-E-HHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCC-CCHHHHHHHHHHHHHHHHh
Confidence 99999998 663 5566666665543
No 147
>PRK07329 hypothetical protein; Provisional
Probab=49.72 E-value=83 Score=32.71 Aligned_cols=77 Identities=16% Similarity=0.079 Sum_probs=53.9
Q ss_pred hhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHH
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 279 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrll 279 (724)
++.+.+++++|+++|+++ =+|.+++. +++..+ .. .+.++.|.++|-..|+++-=|.++...-.-+...
T Consensus 164 ~~~~~~i~~~~~~~~~~l--EiNt~~~~-----~~~~~~-~~----~~~l~~~~~~g~~~i~~gSDAH~~~~vg~~~~~a 231 (246)
T PRK07329 164 EPQLTRIFAKMIDNDLAF--ELNTKSMY-----LYGNEG-LY----RYAIELYKQLGGKLFSIGSDAHKLEHYRYNFDDA 231 (246)
T ss_pred HHHHHHHHHHHHHcCCeE--EEECcccc-----cCCCCc-ch----HHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHH
Confidence 345678999999999999 66888883 333222 11 3348899999987899999999888765655555
Q ss_pred HHHhhcCCC
Q 004907 280 VAEMYVHGW 288 (724)
Q Consensus 280 a~~m~~~g~ 288 (724)
.+.+.+.|+
T Consensus 232 ~~~l~~~g~ 240 (246)
T PRK07329 232 QKLLKEHGI 240 (246)
T ss_pred HHHHHHcCC
Confidence 555544444
No 148
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=49.64 E-value=80 Score=35.59 Aligned_cols=73 Identities=8% Similarity=0.046 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE----EecCChhHHHHHHHHHH
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS----MKASNPVVMVQAYRLLV 280 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS----~KaSnv~~~v~Ayrlla 280 (724)
+.++..++.|+- ||-+--=|++++.+..+|-.. -.+.+.+-++.|.+.||.+|.+. +---+...+.+..+.+.
T Consensus 142 e~l~~l~~~G~~-rvslGvQS~~~~~L~~l~R~~--~~~~~~~ai~~l~~~g~~~i~~dlI~GlP~qt~e~~~~~l~~~~ 218 (430)
T PRK08208 142 EKLALLAARGVN-RLSIGVQSFHDSELHALHRPQ--KRADVHQALEWIRAAGFPILNIDLIYGIPGQTHASWMESLDQAL 218 (430)
T ss_pred HHHHHHHHcCCC-EEEEecccCCHHHHHHhCCCC--CHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHHHHHHHHH
Confidence 356777788864 777777888899999988322 13466677888899999765444 43344444444444443
No 149
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=49.56 E-value=2.4e+02 Score=31.37 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=66.6
Q ss_pred hcCCCcceeecCCCCHHHHHHHhhh-cCcccc-CCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 140 QKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 140 ~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRI-NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.+.+..++|=+--+.+-...|+++ ++.||| .|-|=....++ +....+..-+++.+.++.||++|..+
T Consensus 59 ~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~----------~~~~~~~~~~~~~~~i~~ak~~G~~v 128 (363)
T TIGR02090 59 QEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYK----------LKKSRDEVLEKAVEAVEYAKEHGLIV 128 (363)
T ss_pred hcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 3455666666555555555566776 888887 23321111111 11112333456778999999999999
Q ss_pred EEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHH
Q 004907 218 RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 282 (724)
Q Consensus 218 RIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~v~Ayrlla~~ 282 (724)
+++.-..+ + .+++ -.++.++.+.+.|-+. |+++-| .|..+-+.++.+.+.
T Consensus 129 ~~~~eda~-------r--~~~~----~l~~~~~~~~~~g~~~--i~l~DT~G~~~P~~v~~li~~l~~~ 182 (363)
T TIGR02090 129 EFSAEDAT-------R--TDID----FLIKVFKRAEEAGADR--INIADTVGVLTPQKMEELIKKLKEN 182 (363)
T ss_pred EEEEeecC-------C--CCHH----HHHHHHHHHHhCCCCE--EEEeCCCCccCHHHHHHHHHHHhcc
Confidence 88863221 1 2333 3344556667788875 444444 566655555555554
No 150
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=49.55 E-value=88 Score=32.66 Aligned_cols=72 Identities=10% Similarity=0.071 Sum_probs=49.5
Q ss_pred HHHHHhcCCc-EEEeeccCCCchHH-HhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHh
Q 004907 207 VEKCKKYGRA-VRIGTNHGSLSDRI-MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 283 (724)
Q Consensus 207 v~~ake~g~~-IRIGvN~GSL~~~i-l~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m 283 (724)
++.|.+.|+. ||+.+ |.|+.. ..+++.+++..++.+.+.++.+.++|++ +.+++=.+. ....+-+..+++++
T Consensus 75 v~~a~~~g~~~i~i~~---~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~-~~~~~~~~~~~~~~ 148 (259)
T cd07939 75 IEAALRCGVTAVHISI---PVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLF-VSVGAEDAS-RADPDFLIEFAEVA 148 (259)
T ss_pred HHHHHhCCcCEEEEEE---ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEeeccCC-CCCHHHHHHHHHHH
Confidence 5677788877 67766 666654 4567789999999999999999999984 555553221 12345555555554
No 151
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=49.24 E-value=97 Score=32.54 Aligned_cols=95 Identities=18% Similarity=0.296 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHH
Q 004907 203 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 203 ~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~ 282 (724)
+.++++.+|++|+.+-|=+| |++..+.+. +++.. .+-+.||+|+.+.. .|+.+.
T Consensus 143 l~~l~~~~k~~g~~~~i~Tn-G~~~~~~~~-----------------~ll~~--~d~~~isl~~~~~~----~~~~~~-- 196 (295)
T TIGR02494 143 ALALLQACHERGIHTAVETS-GFTPWETIE-----------------KVLPY--VDLFLFDIKHLDDE----RHKEVT-- 196 (295)
T ss_pred HHHHHHHHHHcCCcEeeeCC-CCCCHHHHH-----------------HHHhh--CCEEEEeeccCChH----HHHHHh--
Confidence 46799999999988777776 555332111 23332 34578999998753 243321
Q ss_pred hhcCCCCccccccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC---CCcccchHHHHH
Q 004907 283 MYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE---PPEKEIDPCRRL 343 (724)
Q Consensus 283 m~~~g~dYPLHLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~---dP~~EV~v~~~L 343 (724)
|.+ ...|.. +|..|...|+==+||+.+.. +-.+|++--.++
T Consensus 197 ----g~~--------------~~~vl~--~i~~l~~~~~~~~i~~~~v~~~n~~~~ei~~l~~~ 240 (295)
T TIGR02494 197 ----GVD--------------NEPILE--NLEALAAAGKNVVIRIPVIPGFNDSEENIEAIAAF 240 (295)
T ss_pred ----CCC--------------hHHHHH--HHHHHHhCCCcEEEEeceeCCcCCCHHHHHHHHHH
Confidence 111 123333 45678888876667776654 223556543333
No 152
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=48.68 E-value=67 Score=35.87 Aligned_cols=59 Identities=14% Similarity=0.094 Sum_probs=46.6
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++||.+|=++ +++-+...++. +|-|++.|+.+|.-. ...++...|..+|++
T Consensus 253 ~~~~~iPIa~dEs~~~~~~~~~li~~~a~dii~~d~~~~GGit----------------------~~~kia~lA~~~gi~ 310 (404)
T PRK15072 253 RQHTTTPLAVGEVFNSIWDCKQLIEEQLIDYIRTTVTHAGGIT----------------------HLRRIADFAALYQVR 310 (404)
T ss_pred HhcCCCCEEeCcCccCHHHHHHHHHcCCCCEEecCccccCcHH----------------------HHHHHHHHHHHcCCc
Confidence 34688999999874 56666666663 999999999998744 367899999999999
Q ss_pred EEEe
Q 004907 217 VRIG 220 (724)
Q Consensus 217 IRIG 220 (724)
+=++
T Consensus 311 ~~~h 314 (404)
T PRK15072 311 TGSH 314 (404)
T ss_pred eeec
Confidence 8654
No 153
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=48.63 E-value=1.4e+02 Score=31.38 Aligned_cols=64 Identities=27% Similarity=0.353 Sum_probs=46.6
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 163 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~ 163 (724)
+|...|+.+|... .|.+..++|-++|.+ +++.|+. |.++|++ +-+=-=|...-|+.|++
T Consensus 50 ~~~~~~v~~qv~~----~d~e~mi~eA~~l~~~~~nv~IKIP~T~~Gl~Ai~~-L~~~GI~--vn~T~vfs~~Qa~~Aa~ 122 (220)
T PRK12655 50 IGGEGILFAQTMS----RDAQGMVEEAKRLRNAIPGIVVKIPVTAEGLAAIKK-LKKEGIP--TLGTAVYSAAQGLLAAL 122 (220)
T ss_pred hCCCCCEEEEEee----CCHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHH-HHHCCCc--eeEeEecCHHHHHHHHH
Confidence 4556799999863 389999999999988 6677765 5566654 44444688899988888
Q ss_pred h-cCcc
Q 004907 164 C-FDKI 168 (724)
Q Consensus 164 ~-vdki 168 (724)
+ ++=|
T Consensus 123 aGa~yI 128 (220)
T PRK12655 123 AGAKYV 128 (220)
T ss_pred cCCeEE
Confidence 6 5433
No 154
>TIGR01060 eno phosphopyruvate hydratase. Alternate name: enolase
Probab=48.53 E-value=1.2e+02 Score=34.49 Aligned_cols=68 Identities=21% Similarity=0.208 Sum_probs=52.3
Q ss_pred HHHHHHHHhhhcCC--CcceeecCCC--CHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhH
Q 004907 130 ACFEIKNSLVQKNY--NIPLVADIHF--APSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVF 203 (724)
Q Consensus 130 a~~~I~~~L~~~~~--~iPLVADIHF--~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~ 203 (724)
++.++++ .+ ++||++|=.| +++-+..+++. ++-+.|.|..+|.-. ..
T Consensus 294 ~~~~L~~-----~~~~~ipI~gDE~~~t~~~~~~~~i~~~a~d~v~ik~~~iGGIt----------------------ea 346 (425)
T TIGR01060 294 GWAELTK-----ELGDKVQIVGDDLFVTNTEILREGIEMGVANSILIKPNQIGTLT----------------------ET 346 (425)
T ss_pred HHHHHHH-----hcCCCCeEEeCCCcccCHHHHHHHHHhCCCCEEEecccccCCHH----------------------HH
Confidence 4555555 35 8999999876 68888888874 999999999999844 35
Q ss_pred HHHHHHHHhcCCcEEEeeccCCC
Q 004907 204 SPLVEKCKKYGRAVRIGTNHGSL 226 (724)
Q Consensus 204 ~~vv~~ake~g~~IRIGvN~GSL 226 (724)
.++++.|+++|+++= +.|.|.
T Consensus 347 ~~ia~lA~~~Gi~~v--v~h~sg 367 (425)
T TIGR01060 347 LDAVELAKKAGYTAV--ISHRSG 367 (425)
T ss_pred HHHHHHHHHcCCcEE--EecCCc
Confidence 778999999999842 446654
No 155
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=48.43 E-value=71 Score=32.12 Aligned_cols=125 Identities=14% Similarity=0.250 Sum_probs=76.6
Q ss_pred cCCCCCeEEeeccC--CCCCCHHHHHHHHHHHHH---------HH----HHHHHHhh--hcCCCcceee-----------
Q 004907 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIAD---------AC----FEIKNSLV--QKNYNIPLVA----------- 149 (724)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~~L~~---------a~----~~I~~~L~--~~~~~iPLVA----------- 149 (724)
||| .-+.|+||.. .|..+.+-|-+|+++|.+ .+ ..+.+.+. ...-.++++.
T Consensus 19 I~g-d~~~V~~l~p~g~dpH~ye~tp~d~~~l~~Adliv~~G~~~E~~~~k~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 97 (203)
T cd01145 19 VAG-DAVIVSALTPPGVDPHQYQLKPSDIAKMRKADLVVTSGHELEGFEPKLAELSSNSKVQPGIKILIEDSDTVGMVDR 97 (203)
T ss_pred HcC-CcEEEEEecCCCCCcccccCCHHHHHHHhcCCEEEEcCCCHHHHHHHHHHhccccccCCCcccccccccccccccc
Confidence 454 4578999864 678999999999999999 33 33333210 0011233321
Q ss_pred ---------cCC--CCHHHHHHHhhh-cCc-cccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 150 ---------DIH--FAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 150 ---------DIH--F~~~lAl~a~~~-vdk-iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
|=| ++|..|...++. .++ .+++|.|=.. |+. ..++|.++|+.+++.+++.++.++.+
T Consensus 98 ~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~----y~~---N~~~~~~~l~~l~~~~~~~l~~~~~~--- 167 (203)
T cd01145 98 AMGDYHGKGNPHVWLDPNNAPALAKALADALIELDPSEQEE----YKE---NLRVFLAKLNKLLREWERQFEGLKGI--- 167 (203)
T ss_pred cccccCCCCCcCeecCHHHHHHHHHHHHHHHHHhCcccHHH----HHH---HHHHHHHHHHHHHHHHHHHhhccCCC---
Confidence 211 356667666665 333 3578987321 111 14569999999999888888776543
Q ss_pred EEEeeccCCCchHHHhhcC
Q 004907 217 VRIGTNHGSLSDRIMSYYG 235 (724)
Q Consensus 217 IRIGvN~GSL~~~il~~yg 235 (724)
.+=+.|.++ ..+.++||
T Consensus 168 -~~v~~H~af-~Y~~~~yG 184 (203)
T cd01145 168 -QVVAYHPSY-QYLADWLG 184 (203)
T ss_pred -eEEEecccH-HHHHHHcC
Confidence 256778777 45666776
No 156
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=48.13 E-value=52 Score=34.68 Aligned_cols=127 Identities=18% Similarity=0.263 Sum_probs=84.5
Q ss_pred HHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhh
Q 004907 155 PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 233 (724)
Q Consensus 155 ~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~ 233 (724)
...+..|+++ .+=+=.+||-+.+.. ....+.+.|+++|..+.| -+|.+
T Consensus 75 ~e~~~~aL~aGk~Vvi~s~~Al~d~~----------------------~~~~L~~~A~~~g~~l~v--~sga~------- 123 (265)
T PRK13303 75 KEHVVPILKAGIDCAVISVGALADEA----------------------LRERLEQAAEAGGARLHL--LSGAI------- 123 (265)
T ss_pred HHHHHHHHHcCCCEEEeChHHhcCHH----------------------HHHHHHHHHHHCCCEEEE--eChHh-------
Confidence 3667777776 666657888765422 235688899999997777 22322
Q ss_pred cCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHH-HHHHhhcCCCCccccccccccCCCCCCchhhHHH
Q 004907 234 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL-LVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIG 312 (724)
Q Consensus 234 yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrl-la~~m~~~g~dYPLHLGVTEAG~~~~G~IKSaiG 312 (724)
-+++.++..+..+++.+.+ +..+++. ++|. .++ .+.| .. .+||.-..+.|..+-+++
T Consensus 124 ----------gg~d~l~~~~~g~~~~v~~--~~~k~p~---~~~~~~~~----~~~d-l~--~~~~~~~~f~G~a~ea~~ 181 (265)
T PRK13303 124 ----------GGIDALAAAKEGGLDEVTY--TGRKPPK---SWRGTPAE----QLCD-LD--ALTEPTVIFEGSAREAAR 181 (265)
T ss_pred ----------hCHHHHHHHHhCCceEEEE--EEecChh---HhCcChhH----hccc-cc--ccccCeEEEEeCHHHHHH
Confidence 2266777777788987776 4455443 2221 111 1345 22 478888899999998888
Q ss_pred H--------HHHhhcCCC-ceeEEecCCCCc
Q 004907 313 I--------GTLLQDGLG-DTIRVSLTEPPE 334 (724)
Q Consensus 313 i--------G~LL~~GIG-DTIRVSLT~dP~ 334 (724)
. .++-.-||| |-.+|.|-.||-
T Consensus 182 ~~p~n~nvaaa~~la~~g~d~~~v~~~adp~ 212 (265)
T PRK13303 182 LFPKNANVAATVALAGLGLDRTRVELIADPA 212 (265)
T ss_pred HCCchhhHHHHHHHhccCccceEEEEEECCC
Confidence 5 345558888 889999999993
No 157
>PRK13669 hypothetical protein; Provisional
Probab=47.99 E-value=67 Score=29.11 Aligned_cols=68 Identities=22% Similarity=0.355 Sum_probs=49.2
Q ss_pred cHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHHHHHHHHHHHhccc
Q 004907 637 DLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGR 716 (724)
Q Consensus 637 DLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipeeeavd~Li~lIk~~g~ 716 (724)
|+..-+..+.+.+..-|+++|---||. +|.|-..-+--.|+.++.|. +-..||+++.+.+.|+++-.
T Consensus 11 Nl~~G~~~~~~~Le~dP~~dVie~gCl------------s~CG~C~~~~FAlVng~~V~-a~t~eeL~~kI~~~i~e~~~ 77 (78)
T PRK13669 11 NLASGSQAAFEKLEKDPNLDVLEYGCL------------GYCGICSEGLFALVNGEVVE-GETPEELVENIYAHLEENPM 77 (78)
T ss_pred chhhhHHHHHHHHHhCCCceEEEcchh------------hhCcCcccCceEEECCeEee-cCCHHHHHHHHHHHHhhcCC
Confidence 343444555556677899998888995 56664333344677888988 78999999999999998654
Q ss_pred c
Q 004907 717 W 717 (724)
Q Consensus 717 W 717 (724)
|
T Consensus 78 ~ 78 (78)
T PRK13669 78 F 78 (78)
T ss_pred C
Confidence 4
No 158
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=46.87 E-value=80 Score=34.16 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=43.2
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++||.+|=.+ ++.-+..+++ +++-|.|-|...|+- .++.+.|+.+|++
T Consensus 213 ~~~~~~Pia~DEs~~~~~d~~~~~~~~a~d~v~ik~~k~GGi-------------------------~~~~~~a~~~gi~ 267 (320)
T PRK02714 213 SQDYQTPIALDESVANLAQLQQCYQQGWRGIFVIKPAIAGSP-------------------------SRLRQFCQQHPLD 267 (320)
T ss_pred HHhCCCCEEECCccCCHHHHHHHHHcCCCCEEEEcchhcCCH-------------------------HHHHHHHHHhCCC
Confidence 34688999999885 4544455555 477799999999872 3455779999999
Q ss_pred EEEeec
Q 004907 217 VRIGTN 222 (724)
Q Consensus 217 IRIGvN 222 (724)
+=+|-.
T Consensus 268 ~~~~~~ 273 (320)
T PRK02714 268 AVFSSV 273 (320)
T ss_pred EEEEec
Confidence 988843
No 159
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.84 E-value=78 Score=33.49 Aligned_cols=155 Identities=14% Similarity=0.223 Sum_probs=88.2
Q ss_pred cCCCCCeEEeeccC--CCCCCHHHHHHHHHHHHH---------HH----HHHHHHhhhc------CCCcce---ee----
Q 004907 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIAD---------AC----FEIKNSLVQK------NYNIPL---VA---- 149 (724)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~~L~~---------a~----~~I~~~L~~~------~~~iPL---VA---- 149 (724)
|||+ -+.|+||.. .|..+.+.+-.|+.+|.+ .+ ..+.+.+... ...+++ +.
T Consensus 18 I~gd-~v~V~~li~~g~dpH~yep~p~d~~~l~~Adliv~~G~~~E~w~~k~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 96 (276)
T cd01016 18 IGGD-HVEVTGLMGPGVDPHLYKATAGDVEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIALEDTLDRSQLILDEEE 96 (276)
T ss_pred HcCC-eEEEEEeeCCCCCcccCCCCHHHHHHHHhCCEEEEcCcChHHHHHHHHHHhccCCceEEeccCcCcccccccccC
Confidence 5665 589999864 678999999999999999 23 3333322110 011122 11
Q ss_pred ---cCC--CCHHHHHHHhhh-cCcc-ccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 150 ---DIH--FAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 150 ---DIH--F~~~lAl~a~~~-vdki-RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
|=| +||..|...++. .+++ ++.|.|=..-+++ -+.|.++|+.+++.+++.+...++++.. +=+.
T Consensus 97 ~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N-------~~~~~~~L~~l~~~~~~~l~~~~~~~~~--~~t~ 167 (276)
T cd01016 97 GTYDPHIWFDVKLWKYAVKAVAEVLSEKLPEHKDEFQAN-------SEAYVEELDSLDAYAKKKIAEIPEQQRV--LVTA 167 (276)
T ss_pred CCCCCCcccCHHHHHHHHHHHHHHHHHHCcccHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhCchhcCe--EEEe
Confidence 222 234466666665 3333 4789883211111 4568999999998888877764433333 3566
Q ss_pred cCCCchHHHhhcCCCc---hHH-------HHHHHHHHHHHHHCCCCcEEEE
Q 004907 223 HGSLSDRIMSYYGDSP---RGM-------VESAFEFARICRKLDFHNFLFS 263 (724)
Q Consensus 223 ~GSL~~~il~~yg~t~---~am-------VeSAle~~~i~e~~~F~diviS 263 (724)
|.++ ..+.++||-+. .++ ...-.+.++.+++.+-.-|...
T Consensus 168 H~af-~Y~~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e 217 (276)
T cd01016 168 HDAF-GYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVERKIKAIFVE 217 (276)
T ss_pred cCcH-HHHHHHcCCeEecCcCCCcccCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 7766 55677777221 111 1223345566667776654443
No 160
>cd00740 MeTr MeTr subgroup of pterin binding enzymes. This family includes cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.
Probab=46.36 E-value=3.9e+02 Score=28.41 Aligned_cols=120 Identities=22% Similarity=0.256 Sum_probs=74.5
Q ss_pred CCcceeecCCCCHHHHHHHhhhcCc-cccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 143 YNIPLVADIHFAPSVALRVAECFDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 143 ~~iPLVADIHF~~~lAl~a~~~vdk-iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+++|+.-|. |++..+.+|++.+.. -=||-=+-... ++++..+++.|+++|.++=+=.
T Consensus 69 ~~~piSIDT-~~~~v~e~aL~~~~G~~iINsIs~~~~---------------------~e~~~~~~~~~~~~~~~vV~m~ 126 (252)
T cd00740 69 PTVPLMLDS-TNWEVIEAGLKCCQGKCVVNSINLEDG---------------------EERFLKVARLAKEHGAAVVVLA 126 (252)
T ss_pred cCCcEEeeC-CcHHHHHHHHhhCCCCcEEEeCCCCCC---------------------ccccHHHHHHHHHhCCCEEEec
Confidence 589999997 589999999987422 22565443210 1235567788999998884433
Q ss_pred ccC-CCchHHHhhcCCCchHHHHHHHHHHHHHHH-CCC--CcEEE-----EEecCC------hhHHHHHHHHHHHHhhcC
Q 004907 222 NHG-SLSDRIMSYYGDSPRGMVESAFEFARICRK-LDF--HNFLF-----SMKASN------PVVMVQAYRLLVAEMYVH 286 (724)
Q Consensus 222 N~G-SL~~~il~~yg~t~~amVeSAle~~~i~e~-~~F--~divi-----S~KaSn------v~~~v~Ayrlla~~m~~~ 286 (724)
+.. ..+ .|++.-.+.+.+.++.+.+ .|. ++|++ -.|+.+ ....+++++.+.++
T Consensus 127 ~~~~g~p--------~t~~~~~~~~~~~~~~~~~~~gi~~~~IiiDPgig~~~~~~~e~~~~~l~~l~~~~~~~~~---- 194 (252)
T cd00740 127 FDEQGQA--------KTRDKKVEIAERAYEALTEFVGFPPEDIIFDPLILPIATGIEEHRPYALETIDAIRMIKER---- 194 (252)
T ss_pred cCCCCCC--------CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCcccccCccHHHHHHHHHHHHHHHHHHhh----
Confidence 210 011 1444445666666666654 453 56665 346432 34457888888777
Q ss_pred CC-Ccccccccc
Q 004907 287 GW-DYPLHLGVT 297 (724)
Q Consensus 287 g~-dYPLHLGVT 297 (724)
+ +||+-+|+.
T Consensus 195 -~p~~pil~G~S 205 (252)
T cd00740 195 -LPAVKISLGVS 205 (252)
T ss_pred -CCCCCEEEEec
Confidence 5 699999985
No 161
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=46.07 E-value=33 Score=36.39 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=44.1
Q ss_pred eccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeec
Q 004907 504 SLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQ 563 (724)
Q Consensus 504 ~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~ 563 (724)
+=++...+++++..+..++.++++. ..-+..|.+ +|.+++.|.++|++-|++.-.|
T Consensus 138 LG~dvP~e~fve~a~e~k~d~v~~S---alMTttm~~-~~~viE~L~eeGiRd~v~v~vG 193 (227)
T COG5012 138 LGRDVPVEEFVEKAKELKPDLVSMS---ALMTTTMIG-MKDVIELLKEEGIRDKVIVMVG 193 (227)
T ss_pred cCCCCCHHHHHHHHHHcCCcEEech---HHHHHHHHH-HHHHHHHHHHcCCccCeEEeec
Confidence 3344456888899999999999876 555556665 9999999999999999987653
No 162
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=45.93 E-value=10 Score=28.97 Aligned_cols=12 Identities=58% Similarity=1.533 Sum_probs=8.9
Q ss_pred ceeecCCCCccc
Q 004907 623 TEYVSCPSCGRT 634 (724)
Q Consensus 623 te~ISCPsCGRT 634 (724)
.+++.||.|+|.
T Consensus 2 ~~~~~C~nC~R~ 13 (33)
T PF08209_consen 2 SPYVECPNCGRP 13 (33)
T ss_dssp S-EEE-TTTSSE
T ss_pred CCeEECCCCcCC
Confidence 478999999996
No 163
>PRK14016 cyanophycin synthetase; Provisional
Probab=45.03 E-value=83 Score=38.15 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCcEEEeeccCCC---------------------------------chHHHhhcC-CCchHH-HHHHHHHH
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSL---------------------------------SDRIMSYYG-DSPRGM-VESAFEFA 249 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL---------------------------------~~~il~~yg-~t~~am-VeSAle~~ 249 (724)
.++++|+++|+|.+. ++.||| .+.+++++| ++|++. +.+.-+..
T Consensus 164 ~I~~~A~~~gi~~~~-l~~~~~v~lgyG~~~~~i~~~~~~~~s~~a~~i~~DK~~tk~lL~~~GIPvP~~~~v~s~~~a~ 242 (727)
T PRK14016 164 AIVDAAEARGIPYIR-LGDGSLVQLGYGKYQRRIQAAETDQTSAIAVDIACDKELTKRLLAAAGVPVPEGRVVTSAEDAW 242 (727)
T ss_pred HHHHHHHHcCCCEEE-eCCCCeEecCCcHHHHHHHHhcCCCCcHHHHHHhCCHHHHHHHHHHCCcCCCCeeEeCCHHHHH
Confidence 588999999998744 444442 235677788 666554 45555566
Q ss_pred HHHHHCCCCcEE----------EEEecCChhHHHHHHHHHHH
Q 004907 250 RICRKLDFHNFL----------FSMKASNPVVMVQAYRLLVA 281 (724)
Q Consensus 250 ~i~e~~~F~div----------iS~KaSnv~~~v~Ayrlla~ 281 (724)
+.++++||.=|+ ++++..|..+..++|+.+.+
T Consensus 243 ~~a~~iG~PvVVKP~~G~~G~GV~~~v~~~~el~~a~~~a~~ 284 (727)
T PRK14016 243 EAAEEIGYPVVVKPLDGNHGRGVTVNITTREEIEAAYAVASK 284 (727)
T ss_pred HHHHHcCCCEEEEECCCCCCCceEEecCCHHHHHHHHHHHHH
Confidence 677888884222 33345566667777766543
No 164
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=44.33 E-value=50 Score=35.80 Aligned_cols=61 Identities=15% Similarity=0.221 Sum_probs=45.0
Q ss_pred hcCCCcceeecCCCC-HHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 140 QKNYNIPLVADIHFA-PSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 140 ~~~~~iPLVADIHF~-~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
++.+++|+.+|=.+. +.........++-|.|-|+..|+-. ...++++.|+.+|+++=
T Consensus 205 ~~~~~~PIa~DEs~~~~~~~~~~~~~~d~i~ik~~k~GGi~----------------------~a~~i~~~A~~~gi~~~ 262 (322)
T PRK05105 205 ARATGIAIAWDESLREPDFQFEAEPGVRAIVIKPTLTGSLE----------------------KCQELIEQAHALGLRAV 262 (322)
T ss_pred HHhCCCCEEECCCCCchhhhhhhcCCCCEEEECccccCCHH----------------------HHHHHHHHHHHcCCcEE
Confidence 346789999998752 3322222334889999999999844 36789999999999998
Q ss_pred Eeec
Q 004907 219 IGTN 222 (724)
Q Consensus 219 IGvN 222 (724)
+|.+
T Consensus 263 ~~~~ 266 (322)
T PRK05105 263 ISSS 266 (322)
T ss_pred EECc
Confidence 8743
No 165
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=44.12 E-value=1.6e+02 Score=31.67 Aligned_cols=65 Identities=8% Similarity=0.044 Sum_probs=41.6
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCc-hHHHHHHHHHHHHHHHCCCCcEEEEEecC
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSP-RGMVESAFEFARICRKLDFHNFLFSMKAS 267 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~-~amVeSAle~~~i~e~~~F~diviS~KaS 267 (724)
..-.+.+-+++.++|+.||++|..+|+++- |.-+ ..+ ...++=+.+.++.+.+.|-+ +.|+++-|
T Consensus 107 ~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e-d~~r--------~d~~~~v~~~~~~~~~~~~~~G~~-~~i~l~DT 172 (279)
T cd07947 107 KMTREEAMEKYLEIVEEALDHGIKPRCHLE-DITR--------ADIYGFVLPFVNKLMKLSKESGIP-VKIRLCDT 172 (279)
T ss_pred CcCHHHHHHHHHHHHHHHHHCCCeEEEEEE-cccC--------CCcccchHHHHHHHHHHHHHCCCC-EEEEeccC
Confidence 334566777888999999999999999981 1110 011 33445556666777777754 34666644
No 166
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=44.11 E-value=81 Score=38.21 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=59.7
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCcEEEeeccC--CC--------chHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG--SL--------SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~IRIGvN~G--SL--------~~~il~~yg~t~~amVeSAle~~~i~e~~~F~divi 262 (724)
.+|+++|.+.|..-.+.|++.|.-. |-+|.| -| ..+--.+||.+.|.-..=.+|-++.+++.==.|+.|
T Consensus 543 ~~eI~~~i~~f~~aA~~a~~aGfDg-veih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v 621 (765)
T PRK08255 543 RADMDRVRDDFVAAARRAAEAGFDW-LELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPM 621 (765)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCE-EEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCee
Confidence 4566677777777777888877553 345544 44 334455688777777777777777777642247789
Q ss_pred EEecCChh-----HHHHHHHHHHHHhhcCCCCc
Q 004907 263 SMKASNPV-----VMVQAYRLLVAEMYVHGWDY 290 (724)
Q Consensus 263 S~KaSnv~-----~~v~Ayrlla~~m~~~g~dY 290 (724)
++|-|-.. .+.+-...+++.+++.|.||
T Consensus 622 ~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~ 654 (765)
T PRK08255 622 SVRISAHDWVEGGNTPDDAVEIARAFKAAGADL 654 (765)
T ss_pred EEEEccccccCCCCCHHHHHHHHHHHHhcCCcE
Confidence 99988321 11233335555555566664
No 167
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=44.08 E-value=98 Score=33.48 Aligned_cols=49 Identities=22% Similarity=0.251 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCC--cEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCCh
Q 004907 202 VFSPLVEKCKKYGR--AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP 269 (724)
Q Consensus 202 ~~~~vv~~ake~g~--~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv 269 (724)
.+.++++.+++++. .+.|-+| |+|-. +.++.+.+.|++.|-||+.+.|.
T Consensus 77 dl~~li~~i~~~~~l~~i~itTN-G~ll~------------------~~~~~L~~aGl~~v~ISlDs~~~ 127 (329)
T PRK13361 77 GCDQLVARLGKLPGLEELSLTTN-GSRLA------------------RFAAELADAGLKRLNISLDTLRP 127 (329)
T ss_pred cHHHHHHHHHhCCCCceEEEEeC-hhHHH------------------HHHHHHHHcCCCeEEEEeccCCH
Confidence 46678888888753 5777777 54421 23344455566666666666553
No 168
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=43.63 E-value=67 Score=35.94 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=44.6
Q ss_pred CCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 142 NYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 142 ~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
.+++||.+|=.+ ++.-+..+++ ++|-+++.|..+|.-. .+.++...|+++|+++=
T Consensus 259 ~~~~PIa~dEs~~~~~~~~~~i~~~avdil~~d~~~~GGit----------------------~~~kia~~A~~~gi~~~ 316 (395)
T cd03323 259 ATGLPLATNMIVTDFRQLGHAIQLNAVDIPLADHHFWGGMR----------------------GSVRVAQVCETWGLGWG 316 (395)
T ss_pred hcCCCEEcCCcccCHHHHHHHHHcCCCcEEeeccccccCHH----------------------HHHHHHHHHHHcCCeEE
Confidence 588999999543 5555555555 4999999999998743 36789999999999984
Q ss_pred Eee
Q 004907 219 IGT 221 (724)
Q Consensus 219 IGv 221 (724)
++.
T Consensus 317 ~h~ 319 (395)
T cd03323 317 MHS 319 (395)
T ss_pred Eec
Confidence 444
No 169
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=43.47 E-value=3.7e+02 Score=27.26 Aligned_cols=97 Identities=8% Similarity=0.095 Sum_probs=57.4
Q ss_pred CCCCeEEeeccCCCCCCHHHHHHHHHHHHH------------HHHHHHHHhhhcCCCcceee--cCCCC---------HH
Q 004907 100 SEHPIRVQTMTTNDTKDVAGTVEEVMRIAD------------ACFEIKNSLVQKNYNIPLVA--DIHFA---------PS 156 (724)
Q Consensus 100 G~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~------------a~~~I~~~L~~~~~~iPLVA--DIHF~---------~~ 156 (724)
++--|+-|.-...+.+|-....+-.+++.+ .++.|++ ...+|+++ =-||+ ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~~~~~~~~~i~~-----~~~iPil~~~~~~~~~~~~~ig~~~~ 83 (219)
T cd04729 9 GGLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRANGVEDIRAIRA-----RVDLPIIGLIKRDYPDSEVYITPTIE 83 (219)
T ss_pred CCeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHH-----hCCCCEEEEEecCCCCCCceeCCCHH
Confidence 344577888888888888877777777777 3344443 46899985 12332 12
Q ss_pred HHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcC-CcEEEee
Q 004907 157 VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-RAVRIGT 221 (724)
Q Consensus 157 lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g-~~IRIGv 221 (724)
.+..|+++ ++-|=++-.+..... .+...++++.+++++ +++-.++
T Consensus 84 ~~~~a~~aGad~I~~~~~~~~~p~--------------------~~~~~~~i~~~~~~g~~~iiv~v 130 (219)
T cd04729 84 EVDALAAAGADIIALDATDRPRPD--------------------GETLAELIKRIHEEYNCLLMADI 130 (219)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCC--------------------CcCHHHHHHHHHHHhCCeEEEEC
Confidence 34456665 776655433322111 013567888888888 6654443
No 170
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=43.47 E-value=71 Score=34.42 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=46.3
Q ss_pred cCCCcceeecCCCC-HHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 141 KNYNIPLVADIHFA-PSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 141 ~~~~iPLVADIHF~-~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.+++|+.+|=.+. +.-+...++. +|-|.|.|...|+-. ...++++.|..+|+++
T Consensus 203 ~~~~~Pia~dEs~~~~~d~~~~~~~~~~d~i~ik~~~~GGi~----------------------~~~~i~~~a~~~gi~~ 260 (307)
T TIGR01927 203 EATGTAIALDESLWELPQLADEYGPGWRGALVIKPAIIGSPA----------------------KLRDLAQKAHRLGLQA 260 (307)
T ss_pred HhCCCCEEeCCCcCChHHHHHHHhcCCCceEEECchhcCCHH----------------------HHHHHHHHHHHcCCCE
Confidence 35889999998753 4444455553 888999999999844 3678999999999999
Q ss_pred EEee
Q 004907 218 RIGT 221 (724)
Q Consensus 218 RIGv 221 (724)
=+|-
T Consensus 261 ~~~~ 264 (307)
T TIGR01927 261 VFSS 264 (307)
T ss_pred EEEC
Confidence 8884
No 171
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=43.34 E-value=73 Score=34.50 Aligned_cols=87 Identities=23% Similarity=0.310 Sum_probs=59.9
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
+|+.+++ .++.+.+|+|.|+|-..++. .+++.+|=+-|--=|.-. .+++++
T Consensus 61 GL~iL~~--vk~~~glpvvTeV~~~~~~~-~vae~vDilQIgArn~rn--------------------------~~LL~a 111 (258)
T TIGR01362 61 GLKILQK--VKEEFGVPILTDVHESSQCE-PVAEVVDIIQIPAFLCRQ--------------------------TDLLVA 111 (258)
T ss_pred HHHHHHH--HHHHhCCceEEEeCCHHHHH-HHHhhCcEEEeCchhcch--------------------------HHHHHH
Confidence 5555555 56679999999999765554 667889999986666622 258888
Q ss_pred HHhcCCcEEEeeccCCCchHHHhhcC--CCchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 210 CKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 210 ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amVeSAle~~~i~e~~~F~divi 262 (724)
+.+.|.||= ++| | -||+.|.-+|. .+...|=++|++
T Consensus 112 ~g~t~kpV~------------lKr-G~~~t~~e~l~aae----yi~~~Gn~~viL 149 (258)
T TIGR01362 112 AAKTGRIVN------------VKK-GQFLSPWDMKNVVE----KVLSTGNKNILL 149 (258)
T ss_pred HhccCCeEE------------ecC-CCcCCHHHHHHHHH----HHHHcCCCcEEE
Confidence 888899982 222 4 58887765543 455566666665
No 172
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=43.22 E-value=61 Score=32.77 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=45.8
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 270 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 270 (724)
+++++++.||+-|- =|||+ -+=-||.+.|--+.+||+..||+=+-+.+|.-.+.
T Consensus 42 RveEiieFak~mgy-kkiGi--------------AfCiGL~~EA~~~~~iL~~~gFev~sV~CKvg~i~ 95 (157)
T PF08901_consen 42 RVEEIIEFAKRMGY-KKIGI--------------AFCIGLRKEARILAKILEANGFEVYSVCCKVGGID 95 (157)
T ss_pred hHHHHHHHHHHcCC-Ceeee--------------hhhHhHHHHHHHHHHHHHHCCCEEEEEEecCCCcc
Confidence 57789999999884 37776 34468999999999999999999999999988765
No 173
>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ. One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.
Probab=43.15 E-value=4.7e+02 Score=29.72 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCC---cEEEEEecCChhHHHHHHHHHHH
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH---NFLFSMKASNPVVMVQAYRLLVA 281 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~---diviS~KaSnv~~~v~Ayrlla~ 281 (724)
++++..++.|.- +|-+.-=|.+++++++++... -++...+.++.|+++|+. ++++-+=--+..++.+.++.+.+
T Consensus 288 e~l~~l~~aG~~-~v~iGiES~s~~~L~~~~K~~--~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~ 364 (472)
T TIGR03471 288 ETLKVMKENGLR-LLLVGYESGDQQILKNIKKGL--TVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKE 364 (472)
T ss_pred HHHHHHHHcCCC-EEEEcCCCCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 467777778864 444444566788899987311 135566788999999993 56667777776766666666544
No 174
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=42.61 E-value=1.2e+02 Score=32.91 Aligned_cols=97 Identities=12% Similarity=0.080 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhcCC--cEEEeec----cCC-CchHHHh---hcCC---------CchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 202 VFSPLVEKCKKYGR--AVRIGTN----HGS-LSDRIMS---YYGD---------SPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 202 ~~~~vv~~ake~g~--~IRIGvN----~GS-L~~~il~---~yg~---------t~~amVeSAle~~~i~e~~~F~divi 262 (724)
++.++++.+++.+. -||||++ .++ +++++++ ++|. .+..+.+.+++.++.|.+.|+.-..-
T Consensus 154 ~L~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q 233 (321)
T TIGR03822 154 RLGDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKTVYVALHANHARELTAEARAACARLIDAGIPMVSQ 233 (321)
T ss_pred HHHHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCcEEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEE
Confidence 46677888887653 3789874 333 5665554 3341 25777899999999999999843332
Q ss_pred E--EecCChhHHHHHHHHHHHHhhcCCC-CccccccccccC
Q 004907 263 S--MKASNPVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAG 300 (724)
Q Consensus 263 S--~KaSnv~~~v~Ayrlla~~m~~~g~-dYPLHLGVTEAG 300 (724)
+ +|- +....+....|.+.+.+.|. .|=||.-.--.|
T Consensus 234 ~vLl~g--vNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g 272 (321)
T TIGR03822 234 SVLLRG--VNDDPETLAALMRAFVECRIKPYYLHHLDLAPG 272 (321)
T ss_pred eeEeCC--CCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCC
Confidence 2 332 22333344444444444566 477887554333
No 175
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=42.28 E-value=70 Score=30.46 Aligned_cols=64 Identities=14% Similarity=0.103 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHhcCCcE---EEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 200 EEVFSPLVEKCKKYGRAV---RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~I---RIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
.+.+.++.+.++++|+.| =...++.+......+..-. -+.-++...+.+++++.+|-..+++..
T Consensus 26 ~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~-r~~~~~~~~~~i~~a~~lg~~~i~~~~ 92 (213)
T PF01261_consen 26 DDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDE-REEALEYLKKAIDLAKRLGAKYIVVHS 92 (213)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSH-HHHHHHHHHHHHHHHHHHTBSEEEEEC
T ss_pred hHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchh-hHHHHHHHHHHHHHHHHhCCCceeecC
Confidence 456778999999999984 2233333332211111111 245677888889999999999988884
No 176
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=42.24 E-value=60 Score=36.88 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=39.1
Q ss_pred hHHHHHHHHHhcCCcEEEe-eccCCC-chHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 004907 202 VFSPLVEKCKKYGRAVRIG-TNHGSL-SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 270 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIG-vN~GSL-~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 270 (724)
.+.++++.||++|+++-|+ +|.-.| +.+ .++-+.++|.+-+.||+|+.|+.
T Consensus 90 ~l~eLl~~lk~~gi~taI~~TnG~~l~~~e------------------~~~~L~~~gld~v~iSvka~dpe 142 (404)
T TIGR03278 90 ELEELTKGLSDLGLPIHLGYTSGKGFDDPE------------------IAEFLIDNGVREVSFTVFATDPE 142 (404)
T ss_pred HHHHHHHHHHhCCCCEEEeCCCCcccCCHH------------------HHHHHHHcCCCEEEEecccCCHH
Confidence 4788999999999999998 643224 322 34556678889999999999966
No 177
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=41.89 E-value=1.1e+02 Score=34.66 Aligned_cols=73 Identities=11% Similarity=0.165 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCcEEE----EEecCChhHHHHHHHHH
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLF----SMKASNPVVMVQAYRLL 279 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~divi----S~KaSnv~~~v~Ayrll 279 (724)
+.++..++.|+- ||-+.-=|+++++++..+. .. .+.+++-++.+++.||.+|.+ -+---+...+.+..+.+
T Consensus 153 e~l~~L~~~G~~-rvsiGvQS~~~~vl~~l~R~~~---~~~~~~ai~~lr~~G~~~v~~dli~GlPgqt~e~~~~tl~~~ 228 (453)
T PRK13347 153 EMLQALAALGFN-RASFGVQDFDPQVQKAINRIQP---EEMVARAVELLRAAGFESINFDLIYGLPHQTVESFRETLDKV 228 (453)
T ss_pred HHHHHHHHcCCC-EEEECCCCCCHHHHHHhCCCCC---HHHHHHHHHHHHhcCCCcEEEeEEEeCCCCCHHHHHHHHHHH
Confidence 367888888864 7777778899999999873 33 344556677888899975444 44445555554544444
Q ss_pred HH
Q 004907 280 VA 281 (724)
Q Consensus 280 a~ 281 (724)
.+
T Consensus 229 ~~ 230 (453)
T PRK13347 229 IA 230 (453)
T ss_pred Hh
Confidence 43
No 178
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=41.28 E-value=14 Score=35.50 Aligned_cols=23 Identities=35% Similarity=0.626 Sum_probs=19.3
Q ss_pred HHHHhhccCCcceeecCCCCccc
Q 004907 612 LLQGCRMRNTKTEYVSCPSCGRT 634 (724)
Q Consensus 612 ILQa~r~R~~kte~ISCPsCGRT 634 (724)
+.=-+++.++++-.|-||+|||.
T Consensus 56 VYfwIGmlStkav~V~CP~C~K~ 78 (114)
T PF11023_consen 56 VYFWIGMLSTKAVQVECPNCGKQ 78 (114)
T ss_pred HHHHhhhhcccceeeECCCCCCh
Confidence 34457899999999999999995
No 179
>PRK07328 histidinol-phosphatase; Provisional
Probab=41.19 E-value=78 Score=33.19 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHH
Q 004907 201 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLV 280 (724)
Q Consensus 201 e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla 280 (724)
+.+.+++++|+++|+++ =+|.++|-+..-+. -| ..+.+++|.++|-. |+|+-=|.++...-..+....
T Consensus 177 ~~~~~il~~~~~~g~~l--EiNt~~~r~~~~~~---yp------~~~il~~~~~~g~~-itigSDAH~~~~vg~~~~~a~ 244 (269)
T PRK07328 177 ELYEEALDVIAAAGLAL--EVNTAGLRKPVGEI---YP------SPALLRACRERGIP-VVLGSDAHRPEEVGFGFAEAL 244 (269)
T ss_pred HHHHHHHHHHHHcCCEE--EEEchhhcCCCCCC---CC------CHHHHHHHHHcCCC-EEEeCCCCCHHHHhccHHHHH
Confidence 45678999999999999 55777775432111 12 23678888888875 888888888776654444444
Q ss_pred HHhhcCCC
Q 004907 281 AEMYVHGW 288 (724)
Q Consensus 281 ~~m~~~g~ 288 (724)
+.+.+.|+
T Consensus 245 ~~l~~~G~ 252 (269)
T PRK07328 245 ALLKEVGY 252 (269)
T ss_pred HHHHHcCC
Confidence 44333443
No 180
>cd01335 Radical_SAM Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o
Probab=41.16 E-value=1.7e+02 Score=26.92 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=39.6
Q ss_pred HHHHHHHHHhc--CCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhH
Q 004907 203 FSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV 271 (724)
Q Consensus 203 ~~~vv~~ake~--g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~ 271 (724)
+.++++.+++. ++.++|-+|...++++ .++.+.+.|+..+.+|+-+.+...
T Consensus 61 ~~~~i~~~~~~~~~~~~~i~T~~~~~~~~------------------~~~~l~~~g~~~i~i~le~~~~~~ 113 (204)
T cd01335 61 LAELLRRLKKELPGFEISIETNGTLLTEE------------------LLKELKELGLDGVGVSLDSGDEEV 113 (204)
T ss_pred HHHHHHHHHhhCCCceEEEEcCcccCCHH------------------HHHHHHhCCCceEEEEcccCCHHH
Confidence 56677888887 8999999998777544 444556669999999999998663
No 181
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=40.82 E-value=67 Score=33.51 Aligned_cols=61 Identities=18% Similarity=0.153 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCch----HHHhhcC-C-CchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSD----RIMSYYG-D-SPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~----~il~~yg-~-t~~amVeSAle~~~i~e~~~F~divi 262 (724)
.-.+.++.++++|+++.+-+|..+-+. ..++++| + +++.++-|+.--++.+.+.++.-+++
T Consensus 25 ~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~~~~~~~~ 91 (257)
T TIGR01458 25 GSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEKQLRPMLL 91 (257)
T ss_pred CHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhcCCCeEEE
Confidence 345688999999999999999998874 3455567 4 78888999988888888887754443
No 182
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=40.78 E-value=1e+02 Score=34.45 Aligned_cols=74 Identities=20% Similarity=0.205 Sum_probs=46.2
Q ss_pred HHhhhhhhhHHHHHHHHHhcCCcE-EE-eeccCCC--------chHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE
Q 004907 194 KELQHIEEVFSPLVEKCKKYGRAV-RI-GTNHGSL--------SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 263 (724)
Q Consensus 194 ~ele~I~e~~~~vv~~ake~g~~I-RI-GvN~GSL--------~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS 263 (724)
+|++.|.+.|..-.+.|++.|--. =| |.|||-| ..+--.+||.+.+.=..=.+|-++-.++.==.++.|+
T Consensus 143 ~eI~~ii~~f~~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~ 222 (382)
T cd02931 143 EEVETFVGKFGESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVS 222 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEE
Confidence 466678888888888888877653 22 2344876 3333456886665444445555554444311567999
Q ss_pred EecC
Q 004907 264 MKAS 267 (724)
Q Consensus 264 ~KaS 267 (724)
+|-|
T Consensus 223 vri~ 226 (382)
T cd02931 223 LRYS 226 (382)
T ss_pred EEEe
Confidence 9987
No 183
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=40.61 E-value=4.4e+02 Score=29.49 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=64.2
Q ss_pred hhcCCCcceeecCCCCHHHHHHHhhh-cCccccC-CCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 139 VQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 139 ~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
.+.+.+.-+++-..-..+-...|+++ ++.|||- |-+=...++ .+..-.+..-+++.+.|+.||++|..
T Consensus 62 ~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~----------~~~~s~~~~l~~~~~~v~~a~~~G~~ 131 (378)
T PRK11858 62 AKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKH----------KLKKTREEVLERMVEAVEYAKDHGLY 131 (378)
T ss_pred HhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHCCCe
Confidence 33455555666554444444455665 7777752 221111011 11122345556677899999999999
Q ss_pred EEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE--EecCChhHHHHHHHHHHHH
Q 004907 217 VRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS--MKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 217 IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS--~KaSnv~~~v~Ayrlla~~ 282 (724)
++++.-.++ .++ .+-.++.++.+.+.|-+.|.|. +=...|..+-+..+.+.+.
T Consensus 132 v~~~~ed~~----------r~~---~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 132 VSFSAEDAS----------RTD---LDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEA 186 (378)
T ss_pred EEEEeccCC----------CCC---HHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHh
Confidence 988732221 111 2344556666777787754442 1223455555555555555
No 184
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=40.47 E-value=3.6e+02 Score=28.02 Aligned_cols=124 Identities=14% Similarity=0.203 Sum_probs=70.7
Q ss_pred CCCCCHHHHHHHHHHHHH---------------HHHHHHHHhhhcCCCcceeecCCC-----CHHHHHH-Hhhh-cCccc
Q 004907 112 NDTKDVAGTVEEVMRIAD---------------ACFEIKNSLVQKNYNIPLVADIHF-----APSVALR-VAEC-FDKIR 169 (724)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~---------------a~~~I~~~L~~~~~~iPLVADIHF-----~~~lAl~-a~~~-vdkiR 169 (724)
-|..|.+..++-+.++.. .. .+.+.|.+. +.++++|+|| ++..+.+ +.++ ++-+=
T Consensus 9 lD~~~~~~~l~~~~~~~~~~~~ikvg~~~f~~~G~-~~i~~l~~~--~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~it 85 (230)
T PRK00230 9 LDFPSKEEALAFLDQLDPAVLFVKVGMELFTAGGP-QFVRELKQR--GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVN 85 (230)
T ss_pred cCCCCHHHHHHHHHhcCCcccEEEEcHHHHHhcCH-HHHHHHHhc--CCCEEEEeehhhccccHHHHHHHHHHcCCCEEE
Confidence 366777777776666543 12 222233333 5689999999 5544433 3444 66666
Q ss_pred cCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec-cCCCchHHHhhcCCCchHHHHHHHHH
Q 004907 170 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN-HGSLSDRIMSYYGDSPRGMVESAFEF 248 (724)
Q Consensus 170 INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN-~GSL~~~il~~yg~t~~amVeSAle~ 248 (724)
+.+ .++ . +.++..++.+++++-+.=+||- -.|++.+-+..-+. ...+-+..+..
T Consensus 86 vH~--~ag-~---------------------~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~-~~~~~~~v~~~ 140 (230)
T PRK00230 86 VHA--SGG-P---------------------RMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGI-NLSLEEQVLRL 140 (230)
T ss_pred Ecc--cCC-H---------------------HHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcC-CCCHHHHHHHH
Confidence 665 222 1 2366677777765334456754 56776443433232 12345566677
Q ss_pred HHHHHHCCCCcEEEE
Q 004907 249 ARICRKLDFHNFLFS 263 (724)
Q Consensus 249 ~~i~e~~~F~diviS 263 (724)
++.+.+.|-+=++.|
T Consensus 141 a~~a~~~g~dgvv~~ 155 (230)
T PRK00230 141 AKLAQEAGLDGVVCS 155 (230)
T ss_pred HHHHHHcCCeEEEeC
Confidence 778888888767666
No 185
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=40.36 E-value=1.9e+02 Score=30.37 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=48.1
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE 163 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~ 163 (724)
+|+..|+.+|.. ..|.++.++|-++|.+ +++.|+. |.++|+ |+-+=-=|...-|+.|++
T Consensus 50 ~~~~~~v~~Qv~----~~d~e~mi~ea~~l~~~~~ni~IKIP~T~~Gl~A~~~-L~~~GI--~vn~T~vfs~~Qa~~Aa~ 122 (220)
T PRK12653 50 MGGQGRLFAQVM----ATTAEGMVNDARKLRSIIADIVVKVPVTAEGLAAIKM-LKAEGI--PTLGTAVYGAAQGLLSAL 122 (220)
T ss_pred hCCCCcEEEEEe----cCCHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHH-HHHcCC--CeeEEEecCHHHHHHHHh
Confidence 456679999996 3689999999999988 5666655 555664 455555689999998888
Q ss_pred h-cCccc
Q 004907 164 C-FDKIR 169 (724)
Q Consensus 164 ~-vdkiR 169 (724)
+ ++=|-
T Consensus 123 aGa~yIs 129 (220)
T PRK12653 123 AGAEYVA 129 (220)
T ss_pred cCCcEEE
Confidence 6 55443
No 186
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=40.28 E-value=1.5e+02 Score=32.79 Aligned_cols=72 Identities=13% Similarity=0.149 Sum_probs=47.1
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHH
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLV 280 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaSnv~~~v~Ayrlla 280 (724)
.++..|+.|+. ||-+--=|.++++++.+|-. .-++.+.+.++.|.+.||.+|.+.+ .--+.....+..+.+.
T Consensus 105 ~l~~lk~~G~n-risiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~~~~ 180 (353)
T PRK05904 105 QINLLKKNKVN-RISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFNFIL 180 (353)
T ss_pred HHHHHHHcCCC-EEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 56777788853 66666677889999999842 1245677788889999998665554 3334444444444433
No 187
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=40.00 E-value=1.4e+02 Score=32.13 Aligned_cols=85 Identities=21% Similarity=0.277 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhh
Q 004907 121 VEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI 199 (724)
Q Consensus 121 v~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I 199 (724)
+.|...|.++++.++ ..|+.|-|-.| =|+.--..|.+. ++-|=+--|-|++-. +++-++..++.
T Consensus 107 ~~~~~~l~~~v~~L~----~~GirVSLFiD--~d~~qi~aa~~~gA~~IELhTG~Ya~~~---------~~~~~~~~~~e 171 (243)
T COG0854 107 AGQLDKLRDAVRRLK----NAGIRVSLFID--PDPEQIEAAAEVGAPRIELHTGPYADAH---------DAAEQARADAE 171 (243)
T ss_pred hhhhhhHHHHHHHHH----hCCCeEEEEeC--CCHHHHHHHHHhCCCEEEEecccccccC---------ChHHHHHHHHH
Confidence 345555555555554 56999999999 455544455565 999999999998732 22222333333
Q ss_pred hhhHHHHHHHHHhcCCcEEEeeccC
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNHG 224 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~G 224 (724)
-+++..-.+.|.+.|. .||+|
T Consensus 172 l~rl~~~a~~A~~lGL----~VnAG 192 (243)
T COG0854 172 LERLAKAAKLAAELGL----KVNAG 192 (243)
T ss_pred HHHHHHHHHHHHHcCc----eEecC
Confidence 3334447788888886 45666
No 188
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=39.96 E-value=1.1e+02 Score=32.23 Aligned_cols=49 Identities=22% Similarity=0.420 Sum_probs=32.6
Q ss_pred hHHHHHHHHHhcCC-cEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCCh
Q 004907 202 VFSPLVEKCKKYGR-AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP 269 (724)
Q Consensus 202 ~~~~vv~~ake~g~-~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv 269 (724)
.|.++++.++++|+ .+.|=+| |+|-+ +.++.+.+.|++.|.||+.+.+.
T Consensus 72 ~l~~iv~~l~~~g~~~v~i~TN-G~ll~------------------~~~~~l~~~g~~~v~iSld~~~~ 121 (302)
T TIGR02668 72 DLIEIIRRIKDYGIKDVSMTTN-GILLE------------------KLAKKLKEAGLDRVNVSLDTLDP 121 (302)
T ss_pred CHHHHHHHHHhCCCceEEEEcC-chHHH------------------HHHHHHHHCCCCEEEEEecCCCH
Confidence 46778888888887 6666665 55422 23444556777778888877654
No 189
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=39.76 E-value=1.4e+02 Score=32.48 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhc---C-CC-----------------chHHHHHHHHHHHHHHHCCCCc
Q 004907 201 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYY---G-DS-----------------PRGMVESAFEFARICRKLDFHN 259 (724)
Q Consensus 201 e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~y---g-~t-----------------~~amVeSAle~~~i~e~~~F~d 259 (724)
..+.++++.++++|..+=|=+| |.|-++.+.++ + .+ .++-.+.+++.++.+.+.|+.
T Consensus 87 pdl~eiv~~~~~~g~~v~l~TN-G~ll~~~~~~l~~~~~~~i~VSLDG~~e~hd~~~~~~g~f~~~l~~I~~l~~~G~~- 164 (318)
T TIGR03470 87 PEIDEIVRGLVARKKFVYLCTN-ALLLEKKLDKFEPSPYLTFSVHLDGLREHHDASVCREGVFDRAVEAIREAKARGFR- 164 (318)
T ss_pred ccHHHHHHHHHHcCCeEEEecC-ceehHHHHHHHHhCCCcEEEEEEecCchhhchhhcCCCcHHHHHHHHHHHHHCCCc-
Confidence 4577889999998877777777 55544333332 2 10 134567888888888888884
Q ss_pred EEEE--E-ecCChhHHHHHHHHHHH
Q 004907 260 FLFS--M-KASNPVVMVQAYRLLVA 281 (724)
Q Consensus 260 iviS--~-KaSnv~~~v~Ayrlla~ 281 (724)
+.++ + ...|...+.+.++++.+
T Consensus 165 v~v~~tv~~~~n~~ei~~~~~~~~~ 189 (318)
T TIGR03470 165 VTTNTTLFNDTDPEEVAEFFDYLTD 189 (318)
T ss_pred EEEEEEEeCCCCHHHHHHHHHHHHH
Confidence 3332 2 45677777777776643
No 190
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=39.74 E-value=2.6e+02 Score=27.72 Aligned_cols=119 Identities=17% Similarity=0.176 Sum_probs=73.3
Q ss_pred hhcCCCcceeecCCCCHHHHHHHhhh-----cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhc
Q 004907 139 VQKNYNIPLVADIHFAPSVALRVAEC-----FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY 213 (724)
Q Consensus 139 ~~~~~~iPLVADIHF~~~lAl~a~~~-----vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~ 213 (724)
.+.++.+=++.|-.+++..-.++++. +|.|=++|-+-.. ..++++.|++.
T Consensus 25 ~~~g~~~~~~~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~-------------------------~~~~l~~~~~~ 79 (257)
T PF13407_consen 25 KELGYEVEIVFDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDS-------------------------LAPFLEKAKAA 79 (257)
T ss_dssp HHHTCEEEEEEESTTTHHHHHHHHHHHHHTTESEEEEESSSTTT-------------------------THHHHHHHHHT
T ss_pred HHcCCEEEEeCCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHH-------------------------HHHHHHHHhhc
Confidence 34466665668999999777766652 7777778776632 45789999999
Q ss_pred CCcEEEeeccC-CCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhh
Q 004907 214 GRAVRIGTNHG-SLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMY 284 (724)
Q Consensus 214 g~~IRIGvN~G-SL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~ 284 (724)
|+|+ |-+|.+ ..+.......|..+..+-..+.+++.-.-..+ .+|++-.=.-+...+.+-++-+-+.|.
T Consensus 80 gIpv-v~~d~~~~~~~~~~~~v~~d~~~~G~~~a~~l~~~~~~~-~~v~~~~~~~~~~~~~~r~~g~~~~l~ 149 (257)
T PF13407_consen 80 GIPV-VTVDSDEAPDSPRAAYVGTDNYEAGKLAAEYLAEKLGAK-GKVLILSGSPGNPNTQERLEGFRDALK 149 (257)
T ss_dssp TSEE-EEESSTHHTTSTSSEEEEE-HHHHHHHHHHHHHHHHTTT-EEEEEEESSTTSHHHHHHHHHHHHHHH
T ss_pred CceE-EEEeccccccccceeeeeccHHHHHHHHHHHHHHHhccC-ceEEeccCCCCchHHHHHHHHHHHHHh
Confidence 9999 667777 44444444555455666555555554333333 566655333334445455555555543
No 191
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=39.14 E-value=21 Score=37.17 Aligned_cols=22 Identities=36% Similarity=0.727 Sum_probs=14.1
Q ss_pred cceeecCCCCccccccHHHHHHH
Q 004907 622 KTEYVSCPSCGRTLFDLQEISAE 644 (724)
Q Consensus 622 kte~ISCPsCGRTlfDLq~~~~~ 644 (724)
.-.|+.||+|| .+=-++++.+.
T Consensus 3 ~~iy~~Cp~Cg-~eev~hEVik~ 24 (201)
T COG1326 3 EEIYIECPSCG-SEEVSHEVIKE 24 (201)
T ss_pred ceEEEECCCCC-cchhhHHHHHh
Confidence 34899999999 33224555543
No 192
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=38.85 E-value=1.4e+02 Score=32.79 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=45.3
Q ss_pred HHhhhhhhhHHHHHHHHHhcCC-cEEEeeccCCCchHH--------HhhcCCCchHHHHHHHHHHHHHHH-CCCCcEEEE
Q 004907 194 KELQHIEEVFSPLVEKCKKYGR-AVRIGTNHGSLSDRI--------MSYYGDSPRGMVESAFEFARICRK-LDFHNFLFS 263 (724)
Q Consensus 194 ~ele~I~e~~~~vv~~ake~g~-~IRIGvN~GSL~~~i--------l~~yg~t~~amVeSAle~~~i~e~-~~F~diviS 263 (724)
+|+++|.+.|..-.+.|++.|- .|=|-.-||-|=..+ -.+||.+.+.=..-+++.++-.++ .| .++.|.
T Consensus 130 ~eI~~i~~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG-~d~~v~ 208 (353)
T cd02930 130 EEIEQTIEDFARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVG-EDFIII 208 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcC-CCceEE
Confidence 5667777778888888888876 455544555443333 345776555555555666665554 34 366777
Q ss_pred EecC
Q 004907 264 MKAS 267 (724)
Q Consensus 264 ~KaS 267 (724)
+|-|
T Consensus 209 iRi~ 212 (353)
T cd02930 209 YRLS 212 (353)
T ss_pred EEec
Confidence 7776
No 193
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=38.71 E-value=1.1e+02 Score=29.74 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCcEEEe--eccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCC
Q 004907 203 FSPLVEKCKKYGRAVRIG--TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD 256 (724)
Q Consensus 203 ~~~vv~~ake~g~~IRIG--vN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~ 256 (724)
+..+.+.|++.|.+++|+ ||.|- .+.|+|-+++. +.+.++.+.+.+
T Consensus 93 l~~l~~~~~~~~~~~~v~lrv~~g~----~~~R~G~~~~e----~~~~~~~i~~~~ 140 (211)
T cd06808 93 LEKLEEAALKAGPPARVLLRIDTGD----ENGKFGVRPEE----LKALLERAKELP 140 (211)
T ss_pred HHHHHHHHHHhCCCceEEEEEcCCC----CCCCCCCCHHH----HHHHHHHHHhCC
Confidence 455666666666655555 46564 46889977743 344455555544
No 194
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=38.33 E-value=1.4e+02 Score=30.78 Aligned_cols=112 Identities=12% Similarity=0.116 Sum_probs=61.9
Q ss_pred HHHHHHHhhhcCCCcceee-cCCC-------CH----------HHHHHHhh-h-cCccccCCCCCcchhhhhhccccchH
Q 004907 131 CFEIKNSLVQKNYNIPLVA-DIHF-------AP----------SVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDD 190 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVA-DIHF-------~~----------~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytde 190 (724)
+..|++.|.+.+..++-++ ..|. +. +.+++.++ . +..|++.++.... +.
T Consensus 59 ~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~~~~~~~~-----------~~ 127 (283)
T PRK13209 59 RLALVNALVETGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQLAGYDVYY-----------EQ 127 (283)
T ss_pred HHHHHHHHHHcCCceeEEecccccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCccccc-----------cc
Confidence 4456666666677665443 3332 22 22333333 3 7777775443211 11
Q ss_pred HHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCC
Q 004907 191 EYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 268 (724)
Q Consensus 191 ey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSn 268 (724)
+..+..++..+.++++.+.|+++|+.|-|= |+++ .++.+.-+.++++++.+-.++.+.+=..|
T Consensus 128 ~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE-~~~~--------------~~~~~~~~~~~ll~~v~~~~lgl~~D~~h 190 (283)
T PRK13209 128 ANNETRRRFIDGLKESVELASRASVTLAFE-IMDT--------------PFMNSISKALGYAHYLNSPWFQLYPDIGN 190 (283)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCCEEEEe-ecCC--------------cccCCHHHHHHHHHHhCCCccceEeccch
Confidence 123445677788999999999999755332 2211 12223345666777777777777763333
No 195
>PF00793 DAHP_synth_1: DAHP synthetase I family; InterPro: IPR006218 Members of the 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthetase family catalyse the first step in aromatic amino acid biosynthesis from chorismate. Class I includes bacterial and yeast enzymes; class II includes higher plants and various microorganisms (see IPR002480 from INTERPRO) []. The first step in the common pathway leading to the biosynthesis of aromatic compounds is the stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP). This reaction is catalyzed by DAHP synthase, a metal-activated enzyme, which in microorganisms is the target for negative-feedback regulation by pathway intermediates or by end products. In Escherichia coli there are three DAHP synthetase isoforms, each specifically inhibited by one of the three aromatic amino acids. The crystal structure of the phenylalanine-regulated form of DAHP synthetase shows the fold as is a (beta/alpha)8 barrel with several additional beta strands and alpha helices []. ; GO: 0009058 biosynthetic process; PDB: 3FS2_B 3STF_B 3FYP_D 3QQ1_A 3QPZ_C 3FYO_D 3STC_A 2QKF_D 3STE_C 3QQ0_A ....
Probab=38.08 E-value=1.1e+02 Score=32.84 Aligned_cols=71 Identities=17% Similarity=0.321 Sum_probs=44.4
Q ss_pred hhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 139 VQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 139 ~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
++++..+|++.|+|--.... .+++.+|=+-|-.=|.-+ ..++++|-..+.||
T Consensus 83 v~~~~glpv~tEv~~~~~~~-~~~d~vd~lqIgAr~~~n--------------------------~~ll~~as~~~~pV- 134 (270)
T PF00793_consen 83 VKEGLGLPVATEVLDPEQAE-YVADLVDWLQIGARLMEN--------------------------QDLLEAASGTGKPV- 134 (270)
T ss_dssp HHHHHT-EEEEEESSGGGHH-HHHTTESEEEE-GGGTTC--------------------------HHHHHHHHCTSSEE-
T ss_pred HHhhhCCeeeEEecCcccHH-HHHhcCcEEEECcchhcC--------------------------HHHHHHhccCCCeE-
Confidence 44567999999999865554 567778877776655533 23667777788887
Q ss_pred EeeccCCCchHHHhhcCCCchHHHHHHHH
Q 004907 219 IGTNHGSLSDRIMSYYGDSPRGMVESAFE 247 (724)
Q Consensus 219 IGvN~GSL~~~il~~yg~t~~amVeSAle 247 (724)
|+--|-- .++++|..+|..
T Consensus 135 -~~K~g~~---------~ai~~~~~Aae~ 153 (270)
T PF00793_consen 135 -GFKNGTF---------AAIDEWLAAAEK 153 (270)
T ss_dssp -EEEE-TT---------SHGGGHHHHHHH
T ss_pred -EeccCCc---------cCHHHHHHHHhh
Confidence 5533321 355666665543
No 196
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=37.83 E-value=1.6e+02 Score=28.07 Aligned_cols=67 Identities=6% Similarity=-0.095 Sum_probs=44.6
Q ss_pred HHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE----ecC-ChhHHHHHHHH
Q 004907 204 SPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KAS-NPVVMVQAYRL 278 (724)
Q Consensus 204 ~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaS-nv~~~v~Ayrl 278 (724)
+.+++.++..++|+=+|+++++.. .+.+.+++.++.+.+.|.+-+.+-. +.| +...+.+-|+.
T Consensus 38 ~~~~~~~~~~~~~v~~~v~~~~~~------------~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~ 105 (201)
T cd00945 38 RLAADALAGSDVPVIVVVGFPTGL------------TTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAA 105 (201)
T ss_pred HHHHHHhCCCCCeEEEEecCCCCC------------CcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHH
Confidence 344555544357877888777643 3457788889999999998887742 111 24566777777
Q ss_pred HHHH
Q 004907 279 LVAE 282 (724)
Q Consensus 279 la~~ 282 (724)
+++.
T Consensus 106 i~~~ 109 (201)
T cd00945 106 VVEA 109 (201)
T ss_pred HHHH
Confidence 7776
No 197
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=37.68 E-value=1.5e+02 Score=30.52 Aligned_cols=142 Identities=21% Similarity=0.227 Sum_probs=79.8
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCC-----HH-----H--HHHHhhh-cCccc--cCCCCCcchhhhhhccccchHHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFA-----PS-----V--ALRVAEC-FDKIR--VNPGNFADRRAQFEQLEYTDDEYQK 194 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~-----~~-----l--Al~a~~~-vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ 194 (724)
.+...++.+...+..+++|.++.|. .+ + +..|++. +|.|= ||+|.++++. |
T Consensus 42 ~~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~GAd~vd~vi~~~~~~~~~------------~-- 107 (236)
T PF01791_consen 42 YVKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRLGADEVDVVINYGALGSGN------------E-- 107 (236)
T ss_dssp GHHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHTT-SEEEEEEEHHHHHTTH------------H--
T ss_pred HHHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHHcCCceeeeecccccccccc------------H--
Confidence 4455566554445679999887764 12 2 2245554 55544 7777776533 1
Q ss_pred HhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChh---H
Q 004907 195 ELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV---V 271 (724)
Q Consensus 195 ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~---~ 271 (724)
++..+.+..+++.|.++|+|+=+ .+-|...-.. .+.=.+.-....+++.+.|-+=|+.|-=-. .. .
T Consensus 108 --~~~~~~i~~v~~~~~~~gl~vIl---E~~l~~~~~~-----~~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~ 176 (236)
T PF01791_consen 108 --DEVIEEIAAVVEECHKYGLKVIL---EPYLRGEEVA-----DEKKPDLIARAARIAAELGADFVKTSTGKP-VGATPE 176 (236)
T ss_dssp --HHHHHHHHHHHHHHHTSEEEEEE---EECECHHHBS-----STTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHH
T ss_pred --HHHHHHHHHHHHHHhcCCcEEEE---EEecCchhhc-----ccccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHH
Confidence 23344567799999999998722 2333222111 011122334567788889999888776311 22 3
Q ss_pred HHHHHHHHHHHhhcCCCCccccccccccCC
Q 004907 272 MVQAYRLLVAEMYVHGWDYPLHLGVTEAGE 301 (724)
Q Consensus 272 ~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~ 301 (724)
-++..+.+++. +++|=+.||-=||.
T Consensus 177 ~~~~~~~~~~~-----~~~p~~~~Vk~sGG 201 (236)
T PF01791_consen 177 DVELMRKAVEA-----APVPGKVGVKASGG 201 (236)
T ss_dssp HHHHHHHHHHT-----HSSTTTSEEEEESS
T ss_pred HHHHHHHHHHh-----cCCCcceEEEEeCC
Confidence 45555555655 78886666665554
No 198
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=37.62 E-value=3.5e+02 Score=28.13 Aligned_cols=84 Identities=15% Similarity=0.185 Sum_probs=62.5
Q ss_pred CCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccc
Q 004907 214 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLH 293 (724)
Q Consensus 214 g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLH 293 (724)
++.+|+-.|.| + + .+.|+++++.+++.|++-|---+...| .+.|+.|.++ .+.|+-
T Consensus 129 ~~~l~vDan~~-~----------~----~~~a~~~~~~l~~~~i~~iEeP~~~~d----~~~~~~l~~~-----~~ipia 184 (265)
T cd03315 129 DAELRVDANRG-W----------T----PKQAIRALRALEDLGLDYVEQPLPADD----LEGRAALARA-----TDTPIM 184 (265)
T ss_pred CCEEEEeCCCC-c----------C----HHHHHHHHHHHHhcCCCEEECCCCccc----HHHHHHHHhh-----CCCCEE
Confidence 67899999844 2 2 467889999999999876665554433 5778888888 788875
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecC
Q 004907 294 LGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLT 330 (724)
Q Consensus 294 LGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT 330 (724)
+| +.+.|.-.+-.++..|.=|-|.+-++
T Consensus 185 ~d---------E~~~~~~~~~~~i~~~~~d~v~~k~~ 212 (265)
T cd03315 185 AD---------ESAFTPHDAFRELALGAADAVNIKTA 212 (265)
T ss_pred EC---------CCCCCHHHHHHHHHhCCCCEEEEecc
Confidence 43 45677888888999999897766554
No 199
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=37.51 E-value=4.6e+02 Score=26.69 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=65.5
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCcccc-CCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIRV-NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiRI-NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
++++.+...=..+.+..+.++ ++-||| -+++=....+ .+....+...++..+.++.||++|..+++.+
T Consensus 66 ~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~----------~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~ 135 (265)
T cd03174 66 NVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRK----------NLNKSREEDLENAEEAIEAAKEAGLEVEGSL 135 (265)
T ss_pred CcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHHH----------HhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567766665446666677776 788884 2333100000 0111222334457788999999999999887
Q ss_pred -ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEE--EEecCChhHHHHHHHHHHHH
Q 004907 222 -NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF--SMKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 222 -N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~divi--S~KaSnv~~~v~Ayrlla~~ 282 (724)
....- ..+++- ..+.++.+.++|.+.|.+ +.=...+..+-+-++.+.++
T Consensus 136 ~~~~~~--------~~~~~~----l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 136 EDAFGC--------KTDPEY----VLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred EeecCC--------CCCHHH----HHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHh
Confidence 33320 012222 234566677778776554 23334566666666666655
No 200
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=37.40 E-value=3.2e+02 Score=27.40 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=60.3
Q ss_pred cCCCcceeecCCCC-HH----HHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHh-c
Q 004907 141 KNYNIPLVADIHFA-PS----VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK-Y 213 (724)
Q Consensus 141 ~~~~iPLVADIHF~-~~----lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake-~ 213 (724)
...++|+++=|+-+ +. .|..+.++ +|.|=||=|.= ... -++.+|=..+++=-+.+.+++++.++ -
T Consensus 51 ~~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p---~~~-----~~~~~~G~~l~~~~~~~~eii~~v~~~~ 122 (231)
T cd02801 51 NPEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCP---SPK-----VTKGGAGAALLKDPELVAEIVRAVREAV 122 (231)
T ss_pred CccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCC---HHH-----HhCCCeeehhcCCHHHHHHHHHHHHHhc
Confidence 45679999999754 54 44455554 88899985531 100 01122322222111223344444443 2
Q ss_pred CCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEe
Q 004907 214 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 265 (724)
Q Consensus 214 g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K 265 (724)
++|+++.+|.|.- .+ +.+.++++.+++.|.+-|.++..
T Consensus 123 ~~~v~vk~r~~~~-----------~~---~~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 123 PIPVTVKIRLGWD-----------DE---EETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred CCCEEEEEeeccC-----------Cc---hHHHHHHHHHHHhCCCEEEECCC
Confidence 4789999876532 11 67889999999999988877653
No 201
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=37.09 E-value=1.4e+02 Score=31.45 Aligned_cols=125 Identities=23% Similarity=0.437 Sum_probs=73.2
Q ss_pred cCCCCCeEEeeccC--CCCCCHHHHHHHHHHHHH---------HHH----HHHHHhhhcC-------CCcceeec-----
Q 004907 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIAD---------ACF----EIKNSLVQKN-------YNIPLVAD----- 150 (724)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~~L~~---------a~~----~I~~~L~~~~-------~~iPLVAD----- 150 (724)
|||+ -+.|+|+.. +|..+.+.+-.|+++|.+ .++ .+.+.+...+ ..++++-.
T Consensus 20 I~gd-~v~V~~l~~~g~dPH~y~~~p~d~~~l~~Adliv~~G~~~e~w~~k~~~~~~~~~~~~v~~~~~i~~~~~~~~~~ 98 (282)
T cd01017 20 IGGD-KADVKLIIPAGTEPHDFEPSPKDIARIADADVFVYNGLGMETWAEKVLKSLQNKKLKVVEASKGIKLLKAGGAEH 98 (282)
T ss_pred hcCC-ceEEEEecCCCCCCcCCCCCHHHHHHHHhCCEEEEcCcchHHHHHHHHHhcccCCceEEECCCCccccccccccc
Confidence 5554 588899854 778999999999999999 233 3333221111 11233210
Q ss_pred ----------CCCC------HHHHHHHhhh-cCcc-ccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHh
Q 004907 151 ----------IHFA------PSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 212 (724)
Q Consensus 151 ----------IHF~------~~lAl~a~~~-vdki-RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake 212 (724)
-++| |..+...++. .+.+ .+.|.|=.. |+. .-+.|.++|+.+++++++.+..++.
T Consensus 99 ~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~Ia~~L~~~dP~~~~~----y~~---N~~~~~~~L~~l~~~~~~~~~~~~~ 171 (282)
T cd01017 99 DHDHSHSHHHGDYDPHVWLSPVLAIQQVENIKDALIKLDPDNKEY----YEK---NAAAYAKKLEALDQEYRAKLAKAKG 171 (282)
T ss_pred cccccccccCCCCCCccccCHHHHHHHHHHHHHHHHHhCcccHHH----HHH---HHHHHHHHHHHHHHHHHHHHhccCC
Confidence 1134 4445444544 3333 477887321 111 1356889999998888888776542
Q ss_pred cCCcEEEeeccCCCchHHHhhcC
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYG 235 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg 235 (724)
.. +=+-|-++. .+.+.||
T Consensus 172 --~~--~v~~H~af~-Y~~~~~g 189 (282)
T cd01017 172 --KT--FVTQHAAFG-YLARRYG 189 (282)
T ss_pred --Ce--EEEecccHH-HHHHHCC
Confidence 33 357777764 5677776
No 202
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=36.99 E-value=2.8e+02 Score=30.44 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=21.9
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHH
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIM 231 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il 231 (724)
.|.++++.++++|+.+.|=+|.--|+++.+
T Consensus 78 ~~~~il~~~~~~g~~~~i~TNG~ll~~~~~ 107 (378)
T PRK05301 78 DLEELVAHARELGLYTNLITSGVGLTEARL 107 (378)
T ss_pred hHHHHHHHHHHcCCcEEEECCCccCCHHHH
Confidence 366789999999988888888555565443
No 203
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=36.72 E-value=67 Score=29.11 Aligned_cols=55 Identities=16% Similarity=0.162 Sum_probs=40.6
Q ss_pred HHHHHHHHHhcCCcEEEeeccCCCch-H---HHhhcC-C-CchHHHHHHHHHHHHHHHCCC
Q 004907 203 FSPLVEKCKKYGRAVRIGTNHGSLSD-R---IMSYYG-D-SPRGMVESAFEFARICRKLDF 257 (724)
Q Consensus 203 ~~~vv~~ake~g~~IRIGvN~GSL~~-~---il~~yg-~-t~~amVeSAle~~~i~e~~~F 257 (724)
..+.++..+++|+++++=+|.+|.+. . .|++.| + +++.++-|+.--++++.+..+
T Consensus 19 a~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 19 AVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp HHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 46789999999999999999999984 2 335567 3 677888888888888887533
No 204
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=36.51 E-value=6.7e+02 Score=28.31 Aligned_cols=98 Identities=22% Similarity=0.293 Sum_probs=57.3
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCchHHHh--------hcCCCchHHHHHHHHHHHHHHHCCCCcEEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRKLDFHNFLFS 263 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il~--------~yg~t~~amVeSAle~~~i~e~~~F~diviS 263 (724)
.+|+++|.+.|..=.+.||+-|-- |=|=--||-|=..+++ +||.+.|--..=++|-++-.++.==.++.|.
T Consensus 141 ~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg 220 (363)
T COG1902 141 EEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVG 220 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 345666777777777777776642 3444567877666655 5776666555555665554444222222455
Q ss_pred EecCChh------HHHHHHHHHHHHhhcCC-CCc
Q 004907 264 MKASNPV------VMVQAYRLLVAEMYVHG-WDY 290 (724)
Q Consensus 264 ~KaSnv~------~~v~Ayrlla~~m~~~g-~dY 290 (724)
++-|-.. ..++-+..+++.+.+.| +||
T Consensus 221 ~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~ 254 (363)
T COG1902 221 VRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDY 254 (363)
T ss_pred EEECccccCCCCCCCHHHHHHHHHHHHhcCCccE
Confidence 5544211 24556677777777777 566
No 205
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=36.47 E-value=1.6e+02 Score=32.44 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=54.8
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCcE-EEeeccCCCc--------hHHHhhcCCCchHHHHHHHHHHHHHHH-CCCCcEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRAV-RIGTNHGSLS--------DRIMSYYGDSPRGMVESAFEFARICRK-LDFHNFLF 262 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~I-RIGvN~GSL~--------~~il~~yg~t~~amVeSAle~~~i~e~-~~F~divi 262 (724)
.+|+++|.+.|..-.+.|++.|.-. =|=.-||.|= .+--.+||.+.+.=..=++|-++-.++ .|-+ + |
T Consensus 144 ~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d-~-v 221 (338)
T cd02933 144 TEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD-R-V 221 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC-c-e
Confidence 4567778888888888888877653 2223455443 333456876555444555555555554 4644 3 7
Q ss_pred EEecCChh--------HHHHHHHHHHHHhhcCCCCc
Q 004907 263 SMKASNPV--------VMVQAYRLLVAEMYVHGWDY 290 (724)
Q Consensus 263 S~KaSnv~--------~~v~Ayrlla~~m~~~g~dY 290 (724)
++|-|-.. .+.+-+..+++.+++.|+||
T Consensus 222 ~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~ 257 (338)
T cd02933 222 GIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAY 257 (338)
T ss_pred EEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 88887421 12334444555555555554
No 206
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=36.14 E-value=3.9e+02 Score=25.45 Aligned_cols=119 Identities=13% Similarity=0.137 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHH-----------HHHHHHHHhhhcCCCcceeecCCCCH---------HHHHHHhhh-cCccccCCCC
Q 004907 116 DVAGTVEEVMRIAD-----------ACFEIKNSLVQKNYNIPLVADIHFAP---------SVALRVAEC-FDKIRVNPGN 174 (724)
Q Consensus 116 Dv~atv~Qi~~L~~-----------a~~~I~~~L~~~~~~iPLVADIHF~~---------~lAl~a~~~-vdkiRINPGN 174 (724)
|.++..+.+..+.+ .++.+++. ..+.++|+++=+=..- ..|..|.+. +|.+=+-| |
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g~~i~~~~~~--~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~-~ 87 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNPGYVRLAADA--LAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADEIDVVI-N 87 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHH--hCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEec-c
Confidence 77777777777776 23334332 1222699887664432 444456665 77766543 2
Q ss_pred CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHH
Q 004907 175 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRK 254 (724)
Q Consensus 175 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~ 254 (724)
++.... ...+.+.+.|+.+.+.| +.++|+-|-.+-+.. .+++ .-.+.++++++
T Consensus 88 ~~~~~~-------------~~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~---------~~~~----~~~~~~~~~~~ 140 (201)
T cd00945 88 IGSLKE-------------GDWEEVLEEIAAVVEAA-DGGLPLKVILETRGL---------KTAD----EIAKAARIAAE 140 (201)
T ss_pred HHHHhC-------------CCHHHHHHHHHHHHHHh-cCCceEEEEEECCCC---------CCHH----HHHHHHHHHHH
Confidence 321100 00245566677788887 779999988875543 1332 22345667778
Q ss_pred CCCCcEEEEE
Q 004907 255 LDFHNFLFSM 264 (724)
Q Consensus 255 ~~F~diviS~ 264 (724)
.|++=|+.|.
T Consensus 141 ~g~~~iK~~~ 150 (201)
T cd00945 141 AGADFIKTST 150 (201)
T ss_pred hCCCEEEeCC
Confidence 8998887765
No 207
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=36.02 E-value=45 Score=34.97 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=16.3
Q ss_pred HHHHHHHHHhcCCcEEEeeccC
Q 004907 203 FSPLVEKCKKYGRAVRIGTNHG 224 (724)
Q Consensus 203 ~~~vv~~ake~g~~IRIGvN~G 224 (724)
|+++++.|||+++|.=| |.+|
T Consensus 78 fKef~e~ike~di~fiV-vSsG 98 (220)
T COG4359 78 FKEFVEWIKEHDIPFIV-VSSG 98 (220)
T ss_pred HHHHHHHHHHcCCCEEE-EeCC
Confidence 77899999999999833 4343
No 208
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=36.01 E-value=26 Score=29.78 Aligned_cols=65 Identities=23% Similarity=0.547 Sum_probs=35.1
Q ss_pred cCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecC--CCCCCCCceeeecCCCceeEeeecceeeeec-CChhHH
Q 004907 627 SCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNG--PGEMADADFGYVGGAPGKIDLYVGKTVVKRG-IAMEQA 703 (724)
Q Consensus 627 SCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNG--PGEmadAD~GyvGg~pGki~Ly~gke~V~~~-Ipeeea 703 (724)
+||.|.+ +.+.+++....+ |+++-+ ++. +.++ ..||+.+ .| .++..++++-.| +|..+-
T Consensus 9 ~C~~C~~-------~~~~~~~~~~~~-~i~~ei----~~~~~~~~~--~~ygv~~-vP---alvIng~~~~~G~~p~~~e 70 (76)
T PF13192_consen 9 GCPYCPE-------LVQLLKEAAEEL-GIEVEI----IDIEDFEEI--EKYGVMS-VP---ALVINGKVVFVGRVPSKEE 70 (76)
T ss_dssp SCTTHHH-------HHHHHHHHHHHT-TEEEEE----EETTTHHHH--HHTT-SS-SS---EEEETTEEEEESS--HHHH
T ss_pred CCCCcHH-------HHHHHHHHHHhc-CCeEEE----EEccCHHHH--HHcCCCC-CC---EEEECCEEEEEecCCCHHH
Confidence 4899964 333444444433 355533 332 2233 4677776 36 467777777778 998776
Q ss_pred HHHHHH
Q 004907 704 TDALIQ 709 (724)
Q Consensus 704 vd~Li~ 709 (724)
+.+|++
T Consensus 71 l~~~l~ 76 (76)
T PF13192_consen 71 LKELLE 76 (76)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 666653
No 209
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=35.78 E-value=4.4e+02 Score=27.03 Aligned_cols=105 Identities=14% Similarity=0.255 Sum_probs=61.8
Q ss_pred HHHHHhhhcCCCcceeecCCCC--HH----HHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHH
Q 004907 133 EIKNSLVQKNYNIPLVADIHFA--PS----VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 205 (724)
Q Consensus 133 ~I~~~L~~~~~~iPLVADIHF~--~~----lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 205 (724)
++.+.|.+.+ .|+++|.-|. ++ .+..+.+. +|-+=++| +++.+ .+++
T Consensus 40 ~~i~~l~~~~--~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~--~~G~~----------------------~l~~ 93 (216)
T cd04725 40 EIVKELRELG--FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHP--YGGSD----------------------MLKA 93 (216)
T ss_pred HHHHHHHHCC--CcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECC--cCCHH----------------------HHHH
Confidence 3444455545 8999999875 33 22234454 88888887 33322 4788
Q ss_pred HHHHHHhcCCcEEEeec-cCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEec
Q 004907 206 LVEKCKKYGRAVRIGTN-HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA 266 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN-~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~Ka 266 (724)
+++.+++++.-+ ++|- --|.+..-++. +.. ...-+-.++.++++.+.|..-+|.|-..
T Consensus 94 ~~~~~~~~~~~~-~~v~~lss~~~~~~q~-~~~-~~~~~~~~~~~~~a~~~g~~G~V~~~~~ 152 (216)
T cd04725 94 ALEAAEEKGKGL-FAVTVLSSPGALDLQE-GIP-GSLEDLVERLAKLAREAGVDGVVCGATE 152 (216)
T ss_pred HHHHHhccCCeE-EEEEcCCCCCHHHHHh-hhc-CCHHHHHHHHHHHHHHHCCCEEEECCcc
Confidence 888888766433 3332 11444433433 311 1234456677788888997777887643
No 210
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=35.57 E-value=3.3e+02 Score=28.98 Aligned_cols=103 Identities=21% Similarity=0.239 Sum_probs=62.9
Q ss_pred CCCcceeecCCC-CHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 142 NYNIPLVADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 142 ~~~iPLVADIHF-~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
+.++-..++.+. +-.....|.++ ++-|||- + ... . -++..+.++.||++|..+++
T Consensus 71 ~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~---~--~~~-----------------~-~~~~~~~i~~ak~~G~~v~~ 127 (266)
T cd07944 71 NTKIAVMVDYGNDDIDLLEPASGSVVDMIRVA---F--HKH-----------------E-FDEALPLIKAIKEKGYEVFF 127 (266)
T ss_pred CCEEEEEECCCCCCHHHHHHHhcCCcCEEEEe---c--ccc-----------------c-HHHHHHHHHHHHHCCCeEEE
Confidence 456666667764 44445556666 8999984 1 110 1 23467899999999998887
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHH
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 282 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~v~Ayrlla~~ 282 (724)
+.-.-+ +-+++-+ ++.++.+.+.|-+. |+++-| +|..+-+-++.+.+.
T Consensus 128 ~~~~a~---------~~~~~~~----~~~~~~~~~~g~~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 179 (266)
T cd07944 128 NLMAIS---------GYSDEEL----LELLELVNEIKPDV--FYIVDSFGSMYPEDIKRIISLLRSN 179 (266)
T ss_pred EEEeec---------CCCHHHH----HHHHHHHHhCCCCE--EEEecCCCCCCHHHHHHHHHHHHHh
Confidence 753322 1234333 44666677788775 455544 566666666666555
No 211
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=35.44 E-value=2.4e+02 Score=28.76 Aligned_cols=99 Identities=13% Similarity=0.186 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeec-CCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccc-cc-----
Q 004907 117 VAGTVEEVMRIADACFEIKNSLVQKNYNIPLVAD-IHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLE-YT----- 188 (724)
Q Consensus 117 v~atv~Qi~~L~~a~~~I~~~L~~~~~~iPLVAD-IHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~-Yt----- 188 (724)
+..-.+|...+...+..+.++++..|. |+|.| .||.+.....+... +--+=+-..+--.-.++|.... |+
T Consensus 72 ~~~y~~q~~~v~~~L~~va~~~l~~G~--sVIvEgv~l~p~~~~~~~~~~v~~i~l~v~d~e~lr~Rl~~R~~~~~~~~p 149 (197)
T PRK12339 72 VKGYLDQARAIMPGINRVIRRALLNGE--DLVIESLYFHPPMIDENRTNNIRAFYLYIRDAELHRSRLADRINYTHKNSP 149 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCC--CEEEEecCcCHHHHHHHHhcCeEEEEEEeCCHHHHHHHHHHHhhcccCCCc
Confidence 455666777666688888888888776 67777 99998775332221 1000011111111122344432 22
Q ss_pred hHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 189 DDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 189 deey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
.+.|.+-.+.|+.-=.-+++.|+++|+|+
T Consensus 150 ~~~~~~~~~~ir~i~~~l~~~a~~~~i~~ 178 (197)
T PRK12339 150 GKRLAEHLPEYRTIMDYSIADARGYNIKV 178 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 24588888888887788999999999998
No 212
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=35.32 E-value=1.4e+02 Score=32.72 Aligned_cols=97 Identities=21% Similarity=0.334 Sum_probs=54.3
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCC-cEEEeeccCCC-----chHHH---hhcCCCchHHHHHHHHHHHHHHHC-CCCcEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGR-AVRIGTNHGSL-----SDRIM---SYYGDSPRGMVESAFEFARICRKL-DFHNFLF 262 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~-~IRIGvN~GSL-----~~~il---~~yg~t~~amVeSAle~~~i~e~~-~F~divi 262 (724)
.+|++.|.+.|..-.+.|++.|- -|=|=.-||-| ++..- .+||...+.=..-++|-++-.++. | .++.|
T Consensus 133 ~~eI~~ii~~f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg-~~~~v 211 (343)
T cd04734 133 EEDIEEIIAAFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG-PDFIV 211 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC-CCCeE
Confidence 34566777777777777777766 33333445765 44332 238876655555556666655553 4 56677
Q ss_pred EEecCChhH-----HHHHHHHHHHHhhcCC-CCc
Q 004907 263 SMKASNPVV-----MVQAYRLLVAEMYVHG-WDY 290 (724)
Q Consensus 263 S~KaSnv~~-----~v~Ayrlla~~m~~~g-~dY 290 (724)
.+|-|-... +.+-...+++.+++.| .||
T Consensus 212 ~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~ 245 (343)
T cd04734 212 GIRISGDEDTEGGLSPDEALEIAARLAAEGLIDY 245 (343)
T ss_pred EEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 777663221 1222335566666666 565
No 213
>PRK05588 histidinol-phosphatase; Provisional
Probab=34.91 E-value=1.5e+02 Score=30.70 Aligned_cols=79 Identities=10% Similarity=0.093 Sum_probs=55.4
Q ss_pred hhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHH
Q 004907 199 IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL 278 (724)
Q Consensus 199 I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrl 278 (724)
..+.+.+++++|+++|+++ =+|.++|.+.. . + .| ....++.+.++|-.-|+|+-=|..+...-.-+..
T Consensus 164 ~~~~~~~il~~~~~~g~~l--EINt~~l~~~~-~-~--~~------~~~~l~~~~~~g~~~i~lgSDAH~~~~vg~~~~~ 231 (255)
T PRK05588 164 FKEIIDEILKVLIEKEKVL--EINTRRLDDKR-S-V--EN------LVKIYKRFYELGGKYITLGSDAHNIEDIGNNFKF 231 (255)
T ss_pred HHHHHHHHHHHHHHcCCEE--EEECcccCCCC-C-C--CC------HHHHHHHHHHcCCcEEEEECCCCCHHHHHhhHHH
Confidence 3445778899999999999 56888886431 1 1 12 2457888899998778999888888776555655
Q ss_pred HHHHhhcCCCC
Q 004907 279 LVAEMYVHGWD 289 (724)
Q Consensus 279 la~~m~~~g~d 289 (724)
..+.+.+.|++
T Consensus 232 ~~~~l~~~G~~ 242 (255)
T PRK05588 232 ALEIAEYCNLK 242 (255)
T ss_pred HHHHHHHcCCE
Confidence 55555555554
No 214
>PRK02935 hypothetical protein; Provisional
Probab=34.88 E-value=20 Score=34.09 Aligned_cols=20 Identities=40% Similarity=0.600 Sum_probs=17.8
Q ss_pred HhhccCCcceeecCCCCccc
Q 004907 615 GCRMRNTKTEYVSCPSCGRT 634 (724)
Q Consensus 615 a~r~R~~kte~ISCPsCGRT 634 (724)
-+++.++++-.|-||+|++.
T Consensus 60 wiGmlStkavqV~CP~C~K~ 79 (110)
T PRK02935 60 WIGMLSTKAVQVICPSCEKP 79 (110)
T ss_pred HHhhhcccceeeECCCCCch
Confidence 36899999999999999984
No 215
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=34.85 E-value=6.9e+02 Score=29.53 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHH-HHH-----------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhc----Cccc-cCCCCCc
Q 004907 114 TKDVAGTVEEVMR-IAD-----------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECF----DKIR-VNPGNFA 176 (724)
Q Consensus 114 T~Dv~atv~Qi~~-L~~-----------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~v----dkiR-INPGNig 176 (724)
..|.+..++.+.+ +.. ....|++ ..++| |.||+...-=-|.|+..+ .||= |.-+|+-
T Consensus 36 ~~~~~~~~~~a~~~~~~~~~dviIsrG~ta~~i~~-----~~~iP-Vv~i~~s~~Dil~al~~a~~~~~~ia~vg~~~~~ 109 (526)
T TIGR02329 36 QLGFEDAVREIRQRLGAERCDVVVAGGSNGAYLKS-----RLSLP-VIVIKPTGFDVMQALARARRIASSIGVVTHQDTP 109 (526)
T ss_pred eccHHHHHHHHHHHHHhCCCcEEEECchHHHHHHH-----hCCCC-EEEecCChhhHHHHHHHHHhcCCcEEEEecCccc
Confidence 3577888888844 444 4555655 57899 568887755455555433 3322 4445554
Q ss_pred chhhhhhcc-ccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcC
Q 004907 177 DRRAQFEQL-EYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 235 (724)
Q Consensus 177 ~~~k~f~~~-~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg 235 (724)
..-+.|..+ .|.=+.| --+=.+.....|+.+|+.|+-+=|| |.+--++-+++|
T Consensus 110 ~~~~~~~~ll~~~i~~~---~~~~~~e~~~~~~~l~~~G~~~viG---~~~~~~~A~~~g 163 (526)
T TIGR02329 110 PALRRFQAAFNLDIVQR---SYVTEEDARSCVNDLRARGIGAVVG---AGLITDLAEQAG 163 (526)
T ss_pred HHHHHHHHHhCCceEEE---EecCHHHHHHHHHHHHHCCCCEEEC---ChHHHHHHHHcC
Confidence 433332221 0000000 0011234667888999999887665 446678888888
No 216
>PRK13843 conjugal transfer protein TraH; Provisional
Probab=34.82 E-value=13 Score=38.82 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=27.0
Q ss_pred EEEEecCChhHHHHHHHHHHHH-hhcC-CCCccccccccccCCCC
Q 004907 261 LFSMKASNPVVMVQAYRLLVAE-MYVH-GWDYPLHLGVTEAGEGE 303 (724)
Q Consensus 261 viS~KaSnv~~~v~Ayrlla~~-m~~~-g~dYPLHLGVTEAG~~~ 303 (724)
+++=|..+..+.++..|.+..+ .+.- .+.||.+||+++++...
T Consensus 44 ~L~~~P~s~~EA~~~vr~l~~~g~v~VGl~Qf~aGlgv~n~~~l~ 88 (207)
T PRK13843 44 VLVPKPKTPDEAMALIRQYVGQAVVRVGLTQYPAGVGVVDAGQLK 88 (207)
T ss_pred eecCCCCCHHHHHHHHHHHHhcCceeeeeEEeccccceeehhhcc
Confidence 3444445666666666655544 0011 16899999999998875
No 217
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=34.77 E-value=1.9e+02 Score=30.74 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=42.7
Q ss_pred hhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHH
Q 004907 198 HIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMV 273 (724)
Q Consensus 198 ~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~v 273 (724)
+.-+++.+.++.||++|..++++.= .+ ...+-.++ +-.++.++.+.+.|.+.| +++-| .|..+-
T Consensus 116 ~~~~~~~~~i~~ak~~G~~v~~~~~--~~----~d~~~~~~----~~~~~~~~~~~~~g~~~i--~l~DT~G~~~P~~v~ 183 (273)
T cd07941 116 ENLAMIRDSVAYLKSHGREVIFDAE--HF----FDGYKANP----EYALATLKAAAEAGADWL--VLCDTNGGTLPHEIA 183 (273)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEeEE--ec----cccCCCCH----HHHHHHHHHHHhCCCCEE--EEecCCCCCCHHHHH
Confidence 3345677899999999987766421 11 11111123 445566777788898854 56633 455555
Q ss_pred HHHHHHHHH
Q 004907 274 QAYRLLVAE 282 (724)
Q Consensus 274 ~Ayrlla~~ 282 (724)
+-++.+.+.
T Consensus 184 ~lv~~l~~~ 192 (273)
T cd07941 184 EIVKEVRER 192 (273)
T ss_pred HHHHHHHHh
Confidence 555555554
No 218
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=34.76 E-value=6.8e+02 Score=27.82 Aligned_cols=114 Identities=19% Similarity=0.255 Sum_probs=58.7
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCccccC-CCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+..++|=..-+.+-...|+++ ++.|||- |-+=....++ +..-.+..-+++.+.|+.||++|..++++.
T Consensus 64 ~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~----------~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ 133 (365)
T TIGR02660 64 PARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAK----------LRKDRAWVLERLARLVSFARDRGLFVSVGG 133 (365)
T ss_pred CcEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHH----------hCcCHHHHHHHHHHHHHHHHhCCCEEEEee
Confidence 344444333445544456665 7777753 2211010111 112233444557789999999999988765
Q ss_pred ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHH
Q 004907 222 NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 282 (724)
Q Consensus 222 N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~v~Ayrlla~~ 282 (724)
-.++- .++ +-.++.++.+.+.|-+. |+++-| .|..+-+-.+.+.+.
T Consensus 134 ed~~r---------~~~----~~l~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 183 (365)
T TIGR02660 134 EDASR---------ADP----DFLVELAEVAAEAGADR--FRFADTVGILDPFSTYELVRALRQA 183 (365)
T ss_pred cCCCC---------CCH----HHHHHHHHHHHHcCcCE--EEEcccCCCCCHHHHHHHHHHHHHh
Confidence 32221 123 33445555666777765 445543 444444444444443
No 219
>COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only]
Probab=34.72 E-value=1.2e+02 Score=34.31 Aligned_cols=166 Identities=19% Similarity=0.193 Sum_probs=98.3
Q ss_pred HHHHHHhh-h-cCccccCCCCCcchhhhhhccccchHHHHHHhh-----------------hhhhhHHHHHHHHHhcCCc
Q 004907 156 SVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQ-----------------HIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 156 ~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele-----------------~I~e~~~~vv~~ake~g~~ 216 (724)
.=+|+++. + +|-||++|+-.+++- .+.|.+-+. -.++++.++++.+-+.|..
T Consensus 124 ~e~l~~L~eAGLDEIRfHp~~~~~~~---------~e~~i~~l~~A~~~g~dvG~EiPaipg~e~~i~e~~~~~~~~~~~ 194 (353)
T COG2108 124 EEALKALAEAGLDEIRFHPPRPGSKS---------SEKYIENLKIAKKYGMDVGVEIPAIPGEEEAILEFAKALDENGLD 194 (353)
T ss_pred HHHHHHHHhCCCCeEEecCCCccccc---------cHHHHHHHHHHHHhCccceeecCCCcchHHHHHHHHHHHHhcccc
Confidence 44555554 4 999999998222211 233433333 2344555666666666522
Q ss_pred EEEeeccCCC--c----hHHHhh-cC------CCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHh
Q 004907 217 VRIGTNHGSL--S----DRIMSY-YG------DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 283 (724)
Q Consensus 217 IRIGvN~GSL--~----~~il~~-yg------~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m 283 (724)
. +|---| + .+++++ |- ..+.+=-|.|+.-++++++. .++-+-.=+|..++.+|-...|-+.
T Consensus 195 F---lNiNELE~sE~N~~~l~~~gy~~~~~~~~av~GS~E~~Lk~l~~~~~~--~~l~vH~Css~~KDavQ~r~Rl~r~- 268 (353)
T COG2108 195 F---LNINELEFSENNYENLLERGYKISDDGSSAVAGSLEAALKVLKWAEEN--WDLTVHYCSSKFKDAVQLRNRLKRM- 268 (353)
T ss_pred e---eeeeeeeeccchHHHHHhcCceeccCCcccccchHHHHHHHHHHHhcc--cCceEEECchhhhHHHHHHHHHHHH-
Confidence 2 222222 1 133333 21 23678888999999999987 7778888888899999987666443
Q ss_pred hcCCCCccccccccccCCCCCCchhhHHHHHHHhhcCCCceeEE-ecCCCCcccchHHHHHHH
Q 004907 284 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRV-SLTEPPEKEIDPCRRLAN 345 (724)
Q Consensus 284 ~~~g~dYPLHLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRV-SLT~dP~~EV~v~~~Ll~ 345 (724)
.+. ..+ -|==+||=|+..-|++.--- |.+++.--+.| .++-++- |.+..+++.
T Consensus 269 Akn-~ak-~yeeit~dGtl~~gi~~~~~-----~~~~~~~e~~vE~~~~~~~--ie~~~evle 322 (353)
T COG2108 269 AKN-VAK-PYEEITEDGTLVYGIVEGGS-----LAEELIEELEVEWLYVGGK--IEIPPEVLE 322 (353)
T ss_pred Hhh-cCC-cceeecCCCcEEEEEEecCc-----chhHHHHhhceEEEecCCc--cccCHHHHH
Confidence 221 122 35668888888777764221 77788888888 5555444 444445544
No 220
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=34.37 E-value=44 Score=34.32 Aligned_cols=125 Identities=22% Similarity=0.357 Sum_probs=73.6
Q ss_pred cCCCCCeEEeecc--CCCCCCHHHHHHHHHHHHH-------------HHHHHHH-HhhhcCCCcceeecC---------C
Q 004907 98 IGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIAD-------------ACFEIKN-SLVQKNYNIPLVADI---------H 152 (724)
Q Consensus 98 IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~-~L~~~~~~iPLVADI---------H 152 (724)
|||+. +.|-++. +.|..+.+-+-.++.+|.+ -++.+.+ ....+-.-+++..++ |
T Consensus 15 I~gd~-v~V~~l~p~~~dpH~~~~~p~d~~~l~~Adlvv~~G~~~e~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~npH 93 (256)
T PF01297_consen 15 IGGDK-VEVTSLVPPGADPHDYEPTPSDIKKLQKADLVVYNGLGLEPWLEKLLESSQNPKVKVIDLSEGIDLDHHGHNPH 93 (256)
T ss_dssp HHTTG-SEEEESSETTSCTTT----HHHHHHHHHSSEEEES-TTTSCCHHHHHHTTTTTTTEEEETTTTS-GSTTCBEST
T ss_pred HhCCc-eEEEecCCCCCccccccCChHHHHHHHhCCEEEEeCCccchhhhhhhhcccccccceEEeecccccccCCCCCc
Confidence 67776 8888886 5778999999999999999 2333331 111111224455555 2
Q ss_pred --CCHHHHHHHhhh-cCcc-ccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCch
Q 004907 153 --FAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 228 (724)
Q Consensus 153 --F~~~lAl~a~~~-vdki-RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~ 228 (724)
+||..+...++. .+++ ++.|.|=.. |+. .-+.|.++|+.+.++++...+.++. ..+=+-|.++.
T Consensus 94 ~Wldp~~~~~~~~~Ia~~L~~~~P~~~~~----y~~---N~~~~~~~L~~l~~~~~~~~~~~~~----~~~v~~h~~~~- 161 (256)
T PF01297_consen 94 VWLDPENAKKMAEAIADALSELDPANKDY----YEK---NAEKYLKELDELDAEIKEKLAKLPG----RPVVVYHDAFQ- 161 (256)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHTGGGHHH----HHH---HHHHHHHHHHHHHHHHHHHHTTSSG----GEEEEEESTTH-
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCccchHH----HHH---HHHHHHHHHHHHHHHHHHHhhcccC----CeEEEEChHHH-
Confidence 267777766665 3332 478876421 111 1345888888888877777666554 34467788773
Q ss_pred HHHhhcC
Q 004907 229 RIMSYYG 235 (724)
Q Consensus 229 ~il~~yg 235 (724)
.+.++||
T Consensus 162 Y~~~~~g 168 (256)
T PF01297_consen 162 YFAKRYG 168 (256)
T ss_dssp HHHHHTT
T ss_pred HHHHhcC
Confidence 5666666
No 221
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=34.22 E-value=5.8e+02 Score=29.53 Aligned_cols=128 Identities=18% Similarity=0.313 Sum_probs=81.8
Q ss_pred ceeEEEee----eecCCCCCeEEeec----------cCCCCCCHHHHHHHHHHHHH------------------------
Q 004907 88 TRTVMVGN----VAIGSEHPIRVQTM----------TTNDTKDVAGTVEEVMRIAD------------------------ 129 (724)
Q Consensus 88 Tr~V~VG~----V~IGG~~PI~VQSM----------t~t~T~Dv~atv~Qi~~L~~------------------------ 129 (724)
-++|.+|. |.|||+--.----. +-.|++|-++-++...++++
T Consensus 66 vkevtiG~ge~~v~iGGdeVlyRheLtffNpt~~fvdv~D~m~e~el~~r~~~I~~f~~ervGe~L~LDgvair~~Sgdp 145 (467)
T COG1456 66 VKEVTIGVGEKAVVIGGDEVLYRHELTFFNPTPMFVDVADDMDEEELVERANEIANFRKERVGEKLKLDGVAIRNRSGDP 145 (467)
T ss_pred eeEEEecCCcceeeecccceeEeeeeeeeCCCceEEECcccCCHHHHHHHHHHHHHHHHhhhcceeeeeeEEEEecCCCH
Confidence 46788884 89999743222111 24578888999888888887
Q ss_pred -----HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHH
Q 004907 130 -----ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 204 (724)
Q Consensus 130 -----a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~ 204 (724)
|.+.+.+ .+ .|++- +-||+..-.+|++.++..| |==+... +++++
T Consensus 146 ekfa~ave~v~~----~~--~pv~l-~s~dpevmkaaLev~~dqk--PllYaAt---------------------e~n~~ 195 (467)
T COG1456 146 EKFAEAVEKVAE----AG--LPVIL-CSFDPEVMKAALEVVKDQK--PLLYAAT---------------------EDNWK 195 (467)
T ss_pred HHHHHHHHHHHh----cC--CcEEE-EeCCHHHHHHHHHHhhccC--ceeeecc---------------------cccHH
Confidence 3333333 34 66543 5699998888888765543 3333332 23567
Q ss_pred HHHHHHHhcCCcEEEeecc-CCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE
Q 004907 205 PLVEKCKKYGRAVRIGTNH-GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 263 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~-GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS 263 (724)
++.+.|-++++|+ ++.+ +-| +.|.- .+.-|.+.|-+|||+-
T Consensus 196 e~~klav~y~vpl--vl~a~~dl------------~~lk~----la~~~~~~Gi~divLd 237 (467)
T COG1456 196 EFAKLAVEYKVPL--VLSAFNDL------------DDLKN----LAVTYAQAGIKDIVLD 237 (467)
T ss_pred HHHHHHhhcCCcE--EEeccCCH------------HHHHH----HHHHHHHcCCceEEec
Confidence 7899999999998 3322 222 23332 3456778899999984
No 222
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=34.05 E-value=1.7e+02 Score=31.29 Aligned_cols=75 Identities=23% Similarity=0.266 Sum_probs=45.6
Q ss_pred hhhhhhHHHHHHHHHhcCCcEEEeec--cCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----Chh
Q 004907 197 QHIEEVFSPLVEKCKKYGRAVRIGTN--HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPV 270 (724)
Q Consensus 197 e~I~e~~~~vv~~ake~g~~IRIGvN--~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~ 270 (724)
+.+.++..+.++.||++|.-+++.+- .|. + ..+.+ -.+-.++.++.+.+.|-+.| +++-| .|.
T Consensus 110 ~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~-~-----~~~~~---~~~~~~~~~~~~~~~Ga~~i--~l~DT~G~~~P~ 178 (274)
T cd07938 110 AESLERFEPVAELAKAAGLRVRGYVSTAFGC-P-----YEGEV---PPERVAEVAERLLDLGCDEI--SLGDTIGVATPA 178 (274)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEEEeEecC-C-----CCCCC---CHHHHHHHHHHHHHcCCCEE--EECCCCCccCHH
Confidence 45556677899999999999887652 221 1 01122 24455667777888898754 44433 455
Q ss_pred HHHHHHHHHHHH
Q 004907 271 VMVQAYRLLVAE 282 (724)
Q Consensus 271 ~~v~Ayrlla~~ 282 (724)
.+-+-.+.|.++
T Consensus 179 ~v~~lv~~l~~~ 190 (274)
T cd07938 179 QVRRLLEAVLER 190 (274)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 223
>PRK15440 L-rhamnonate dehydratase; Provisional
Probab=33.86 E-value=1.7e+02 Score=33.00 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=41.8
Q ss_pred CCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 143 YNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 143 ~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
.+||+.+|=|. ...-+...++ ++|=+++.+...|.-. ...++...|..+|+++
T Consensus 260 ~~i~ia~gE~~~~~~~~~~li~~~a~Divq~d~~~~GGit----------------------~~~kia~lA~a~gi~~-- 315 (394)
T PRK15440 260 AGMMVTSGEHEATLQGFRTLLEMGCIDIIQPDVGWCGGLT----------------------ELVKIAALAKARGQLV-- 315 (394)
T ss_pred CCCceecCCCccCHHHHHHHHHcCCCCEEeCCccccCCHH----------------------HHHHHHHHHHHcCCee--
Confidence 34788888765 3444444555 5999999999998743 3678999999999997
Q ss_pred eeccC
Q 004907 220 GTNHG 224 (724)
Q Consensus 220 GvN~G 224 (724)
+.|+
T Consensus 316 -~pH~ 319 (394)
T PRK15440 316 -VPHG 319 (394)
T ss_pred -cccC
Confidence 4454
No 224
>PLN02428 lipoic acid synthase
Probab=33.85 E-value=7.4e+02 Score=28.00 Aligned_cols=148 Identities=14% Similarity=0.092 Sum_probs=79.9
Q ss_pred CCeEEeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhh
Q 004907 102 HPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRA 180 (724)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k 180 (724)
.-|+|+|-+.+|..|-. ...+++.+..|++..-.-.+.+ |+.|..-+..++..-.++ ++-+= +|+=.
T Consensus 148 k~vvltSg~rddl~D~g-----a~~~~elir~Ir~~~P~i~Ie~-L~pdf~~d~elL~~L~eAG~d~i~---hnlET--- 215 (349)
T PLN02428 148 DYVVLTSVDRDDLPDGG-----SGHFAETVRRLKQLKPEILVEA-LVPDFRGDLGAVETVATSGLDVFA---HNIET--- 215 (349)
T ss_pred CEEEEEEcCCCCCCccc-----HHHHHHHHHHHHHhCCCcEEEE-eCccccCCHHHHHHHHHcCCCEEc---cCccC---
Confidence 35888888877766632 2233335555555210001111 344665565544333343 55433 44421
Q ss_pred hhhccccchHHHHHHhh--h-hhhhHHHHHHHHHhc--CCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHC
Q 004907 181 QFEQLEYTDDEYQKELQ--H-IEEVFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL 255 (724)
Q Consensus 181 ~f~~~~Ytdeey~~ele--~-I~e~~~~vv~~ake~--g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~ 255 (724)
.+.+...+. + =.+...++++.||+. |+.++-|.=-| +|.|.+.+ .+.++.++++
T Consensus 216 --------v~rL~~~Ir~~~~sye~~Le~L~~ak~~~pGi~tkSg~MvG---------LGET~Edv----~e~l~~Lrel 274 (349)
T PLN02428 216 --------VERLQRIVRDPRAGYKQSLDVLKHAKESKPGLLTKTSIMLG---------LGETDEEV----VQTMEDLRAA 274 (349)
T ss_pred --------cHHHHHHhcCCCCCHHHHHHHHHHHHHhCCCCeEEEeEEEe---------cCCCHHHH----HHHHHHHHHc
Confidence 111222221 1 123456788888888 88887776333 35666544 4577888999
Q ss_pred CCCc-----------EEEEEecCChhHHHHHHHHHHHH
Q 004907 256 DFHN-----------FLFSMKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 256 ~F~d-----------iviS~KaSnv~~~v~Ayrlla~~ 282 (724)
|++- +-++++.-=.++--+.|+.++..
T Consensus 275 gvd~vtigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~ 312 (349)
T PLN02428 275 GVDVVTFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEE 312 (349)
T ss_pred CCCEEeeccccCCCcceeeeecccCHHHHHHHHHHHHH
Confidence 9754 44455555456667777777776
No 225
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=33.60 E-value=2e+02 Score=31.00 Aligned_cols=75 Identities=9% Similarity=0.166 Sum_probs=47.1
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCC---cEEEEEecCChhHHHHHHHHHHH
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH---NFLFSMKASNPVVMVQAYRLLVA 281 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~---diviS~KaSnv~~~v~Ayrlla~ 281 (724)
++++..++.|..+||-+..=|.+++++++.+... -++...+.++.+.+.||. ++++-+---+...+.+..+.+.+
T Consensus 127 ~~L~~l~~~G~~~~i~lGlQS~~d~~L~~i~Rg~--t~~~~~~ai~~l~~~gi~v~~~lI~GlPget~e~~~~t~~~l~~ 204 (302)
T TIGR01212 127 DLLAEYVERGYEVWVELGLQTAHDKTLKKINRGH--DFACYVDAVKRARKRGIKVCSHVILGLPGEDREEMMETAKIVSL 204 (302)
T ss_pred HHHHHhhhCCceEEEEEccCcCCHHHHHHHcCcC--hHHHHHHHHHHHHHcCCEEEEeEEECCCCCCHHHHHHHHHHHHh
Confidence 3444455667766666666677889999886321 235667778888899984 33344434455666666666554
No 226
>PRK08185 hypothetical protein; Provisional
Probab=33.41 E-value=3.1e+02 Score=29.95 Aligned_cols=152 Identities=14% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCeEEeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHH----HHHHHhhh-cCccccCCCCC
Q 004907 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPS----VALRVAEC-FDKIRVNPGNF 175 (724)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~----lAl~a~~~-vdkiRINPGNi 175 (724)
+.||.+|.-..+-...= ..+...+..+.+ .+++|++ +|.||- ....|++. ++.|=|-=-+.
T Consensus 37 ~sPvIl~~~~~~~~~~~-------~~~~~~~~~~a~-----~~~vPV~--lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~l 102 (283)
T PRK08185 37 NAPAIIAIHPNELDFLG-------DNFFAYVRERAK-----RSPVPFV--IHLDHGATIEDVMRAIRCGFTSVMIDGSLL 102 (283)
T ss_pred CCCEEEEeCcchhhhcc-------HHHHHHHHHHHH-----HCCCCEE--EECCCCCCHHHHHHHHHcCCCEEEEeCCCC
Q ss_pred cchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHC
Q 004907 176 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKL 255 (724)
Q Consensus 176 g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~ 255 (724)
-..+- -+..+++++.|+.+|+++=-=+ |.+...-...-+.+.+.+..+.-|-.+..++-
T Consensus 103 ~~eeN-------------------i~~t~~vv~~a~~~gv~vE~El--G~vg~~e~~~~~~~~~~~~t~peea~~f~~~T 161 (283)
T PRK08185 103 PYEEN-------------------VALTKEVVELAHKVGVSVEGEL--GTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRT 161 (283)
T ss_pred CHHHH-------------------HHHHHHHHHHHHHcCCeEEEEE--eeccCcccccccccccccCCCHHHHHHHHHhh
Q ss_pred CCCcEEEEE-------ecC-ChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 256 DFHNFLFSM-------KAS-NPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 256 ~F~diviS~-------KaS-nv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
|-+-+-+|+ |.+ .+...++--+.+.+. .+.||
T Consensus 162 gvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~-----~~iPL 201 (283)
T PRK08185 162 GVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINER-----VDIPL 201 (283)
T ss_pred CCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHh-----hCCCE
No 227
>PHA00616 hypothetical protein
Probab=32.56 E-value=31 Score=28.13 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=23.2
Q ss_pred cCCCCccccccHHHHHHHHHHHhcCC
Q 004907 627 SCPSCGRTLFDLQEISAEIREKTSHL 652 (724)
Q Consensus 627 SCPsCGRTlfDLq~~~~~Ik~~t~hL 652 (724)
.||-||.+-.+.+++.+-++..+++-
T Consensus 3 qC~~CG~~F~~~s~l~~H~r~~hg~~ 28 (44)
T PHA00616 3 QCLRCGGIFRKKKEVIEHLLSVHKQN 28 (44)
T ss_pred ccchhhHHHhhHHHHHHHHHHhcCCC
Confidence 49999999889999999999888873
No 228
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=32.39 E-value=2.5e+02 Score=29.46 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHH
Q 004907 201 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAY 276 (724)
Q Consensus 201 e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~v~Ay 276 (724)
+.+.+.++.||++|..++++.-.++- .+++- ..+.++.+.+.|-+ .|+++-| .|..+.+-+
T Consensus 114 ~~~~~~i~~a~~~G~~v~~~~~~~~~---------~~~~~----~~~~~~~~~~~G~~--~i~l~DT~G~~~P~~v~~lv 178 (268)
T cd07940 114 ERAVEAVEYAKSHGLDVEFSAEDATR---------TDLDF----LIEVVEAAIEAGAT--TINIPDTVGYLTPEEFGELI 178 (268)
T ss_pred HHHHHHHHHHHHcCCeEEEeeecCCC---------CCHHH----HHHHHHHHHHcCCC--EEEECCCCCCCCHHHHHHHH
Confidence 45788999999999988876533221 13322 33455555666765 4677766 666666666
Q ss_pred HHHHHH
Q 004907 277 RLLVAE 282 (724)
Q Consensus 277 rlla~~ 282 (724)
+.+.+.
T Consensus 179 ~~l~~~ 184 (268)
T cd07940 179 KKLKEN 184 (268)
T ss_pred HHHHHh
Confidence 666655
No 229
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=32.32 E-value=17 Score=34.27 Aligned_cols=14 Identities=50% Similarity=1.381 Sum_probs=12.5
Q ss_pred cCCCCccccccHHH
Q 004907 627 SCPSCGRTLFDLQE 640 (724)
Q Consensus 627 SCPsCGRTlfDLq~ 640 (724)
.||+||...|||..
T Consensus 11 ~Cp~CG~kFYDLnk 24 (108)
T PF09538_consen 11 TCPSCGAKFYDLNK 24 (108)
T ss_pred cCCCCcchhccCCC
Confidence 59999999999965
No 230
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=32.26 E-value=2.5e+02 Score=31.82 Aligned_cols=122 Identities=15% Similarity=0.135 Sum_probs=66.9
Q ss_pred hHHHHHHHHHhcCCcEE-EeeccCCCchHHHhhcCC--Cc-h----HHHHHHHHHHHHHHHCCCCcEEEE----EecCCh
Q 004907 202 VFSPLVEKCKKYGRAVR-IGTNHGSLSDRIMSYYGD--SP-R----GMVESAFEFARICRKLDFHNFLFS----MKASNP 269 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IR-IGvN~GSL~~~il~~yg~--t~-~----amVeSAle~~~i~e~~~F~diviS----~KaSnv 269 (724)
.+.++.+.++++|+.+- |+.| -.+.. ..++|. .| + .=++-..+.+++++++|=..|.+= .|.+-.
T Consensus 70 d~~~~~~~l~~~GL~v~~i~p~--~f~~~-~~~~GSLt~pD~~vR~~AIe~~k~~idiA~eLGa~~I~iW~~DG~~~~g~ 146 (378)
T TIGR02635 70 DYEELARYAEELGLKIGAINPN--LFQDD-DYKFGSLTHPDKRIRRKAIDHLLECVDIAKKTGSKDISLWLADGTNYPGQ 146 (378)
T ss_pred CHHHHHHHHHHcCCceeeeeCC--ccCCc-ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEecCCcCcCCcc
Confidence 47788899999999885 5554 33221 114441 12 2 345556666778889998865333 444332
Q ss_pred hHHHHHHHHHHHHhhcCCCCccccccccccCC---CCCC---c-hhhHHHHHHHhhcCCCceeEEec
Q 004907 270 VVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE---GEDG---R-MKSAIGIGTLLQDGLGDTIRVSL 329 (724)
Q Consensus 270 ~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~---~~~G---~-IKSaiGiG~LL~~GIGDTIRVSL 329 (724)
...-++++.|.+-|++-. +|.-+ |+.=+=+ -+.. + + ..+|.+.++.+-+|+.+.|-|
T Consensus 147 ~~~~~a~~rl~esL~eI~-~~~~~-~v~~~iE~Kp~Ep~~y~t~~-~~~~~~l~l~~~lg~~~~v~l 210 (378)
T TIGR02635 147 DDFRSRKDRLEESLAEVY-EHLGA-DMRLLIEYKFFEPAFYHTDI-PDWGTAYALSEKLGERALVLV 210 (378)
T ss_pred cCHHHHHHHHHHHHHHHH-HhCcC-CCEEEEecCCCCCceeeecC-CcHHHHHHHHHhhCCCceEEe
Confidence 223333444444433322 22212 4332211 1111 1 3 678999999999998876666
No 231
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=32.09 E-value=3.8e+02 Score=28.62 Aligned_cols=71 Identities=15% Similarity=0.165 Sum_probs=49.9
Q ss_pred CCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh
Q 004907 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 164 (724)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~ 164 (724)
.-||++|-.. .--.|.++.++|-++|.+ +++.|+. |.++|+ |+=+=.=|...-|+.|+++
T Consensus 84 ~G~Vs~ev~~-~~~~d~~~mi~~A~~l~~~~~~~nv~IKIPaT~~Gl~A~~~-L~~~GI--~vn~T~vfs~~Qa~~aa~A 159 (252)
T cd00439 84 DGRVSVEVSA-RLADDTQGMVEAAKYLSKVVNRRNIYIKIPATAEGIPAIKD-LIAAGI--SVNVTLIFSIAQYEAVADA 159 (252)
T ss_pred CCeEEEEEec-cccCCHHHHHHHHHHHHHhcCcccEEEEeCCCHHHHHHHHH-HHHCCC--ceeeeeecCHHHHHHHHHc
Confidence 4589999742 222789999999999987 5666665 566664 5555557899999999997
Q ss_pred -cCccccCCCCC
Q 004907 165 -FDKIRVNPGNF 175 (724)
Q Consensus 165 -vdkiRINPGNi 175 (724)
++=|-..=|=+
T Consensus 160 ga~~ispfvgRi 171 (252)
T cd00439 160 GTSVASPFVSRI 171 (252)
T ss_pred CCCEEEEeccHH
Confidence 65555444433
No 232
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.95 E-value=2.2e+02 Score=31.41 Aligned_cols=98 Identities=18% Similarity=0.312 Sum_probs=56.8
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCC-cEEEeeccCCCchHH--------HhhcCCCchHHHHHHHHHHHHHHH-CC---CCc
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGR-AVRIGTNHGSLSDRI--------MSYYGDSPRGMVESAFEFARICRK-LD---FHN 259 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~-~IRIGvN~GSL~~~i--------l~~yg~t~~amVeSAle~~~i~e~-~~---F~d 259 (724)
.+|++.|.+.|..=.+.|++.|- .|=|=.-||-|=..+ -.+||.+.+.=..=++|-++-.++ .| -.+
T Consensus 136 ~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~ 215 (353)
T cd04735 136 HEEIEDIIDAFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKD 215 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCC
Confidence 45667788888888888888876 344444455543333 345776555555555555554444 45 257
Q ss_pred EEEEEecCChhH-----HHHHHHHHHHHhhcCCCCc
Q 004907 260 FLFSMKASNPVV-----MVQAYRLLVAEMYVHGWDY 290 (724)
Q Consensus 260 iviS~KaSnv~~-----~v~Ayrlla~~m~~~g~dY 290 (724)
+.|.+|-|-... +.+-+..+++.+++.|+||
T Consensus 216 ~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~ 251 (353)
T cd04735 216 FILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDY 251 (353)
T ss_pred ceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCE
Confidence 789998874221 1223344555555556665
No 233
>PLN00191 enolase
Probab=31.57 E-value=2.7e+02 Score=32.40 Aligned_cols=79 Identities=10% Similarity=0.065 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCcceeecCC--CCHHHHHHHhhh--cCccccCCC
Q 004907 115 KDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAEC--FDKIRVNPG 173 (724)
Q Consensus 115 ~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~iPLVADIH--F~~~lAl~a~~~--vdkiRINPG 173 (724)
.+.+..++=..+|.+ ++..+++ ...+||++|=- .+++.+..+++. ++.|-|-|.
T Consensus 295 ~s~~e~i~~~~~L~~~y~I~~IEDPl~~~D~eg~~~Lt~-----~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~ 369 (457)
T PLN00191 295 KSGDELIDLYKEFVSDYPIVSIEDPFDQDDWEHWAKLTS-----LEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVN 369 (457)
T ss_pred cCHHHHHHHHHHHhhcCCcEEEECCCCcccHHHHHHHHc-----cCCCcEEccCcccCCHHHHHHHHHhCCCCEEEeccc
Confidence 466666666666555 3444443 48899999654 678888888874 999999999
Q ss_pred CCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 174 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 174 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
.+|.-. ...++++.|+++|+++=||
T Consensus 370 qiGGIT----------------------ea~~~a~lA~~~G~~~~is 394 (457)
T PLN00191 370 QIGTVT----------------------ESIEAVKMSKAAGWGVMTS 394 (457)
T ss_pred ccCCHH----------------------HHHHHHHHHHHCCCEEEeC
Confidence 999844 2577999999999988554
No 234
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=31.34 E-value=78 Score=33.89 Aligned_cols=103 Identities=22% Similarity=0.212 Sum_probs=66.6
Q ss_pred CCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHH
Q 004907 533 EDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNL 612 (724)
Q Consensus 533 s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~~i~~v~~~I 612 (724)
.+..-|+.+.|+|.....+.| |++.+-.|++| |++ +=.|..+|| .+.++ +.|..
T Consensus 73 ~d~e~mi~eA~~L~~~~~~~~----i~IKIP~T~eG------l~A---i~~L~~eGI----~~NvT---------LiFS~ 126 (239)
T COG0176 73 FDAEAMIEEARRLAKLIDNVG----IVIKIPATWEG------LKA---IKALEAEGI----KTNVT---------LIFSA 126 (239)
T ss_pred ccHHHHHHHHHHHHHhcCcCC----eEEEeCCCHHH------HHH---HHHHHHCCC----eeeEE---------EEecH
Confidence 344567778888877666655 66666666653 332 345666664 33222 12334
Q ss_pred HHHhhccCCcceeecCCCCcc---ccccHHHHHHHHHHHhcCCC--CcEEEEeee
Q 004907 613 LQGCRMRNTKTEYVSCPSCGR---TLFDLQEISAEIREKTSHLP--GVSIAIMGC 662 (724)
Q Consensus 613 LQa~r~R~~kte~ISCPsCGR---TlfDLq~~~~~Ik~~t~hLk--gvkIAVMGC 662 (724)
-|++-.=..+..||| |=-|| +..|-...++.+++.....+ +-++.+|++
T Consensus 127 ~QAl~aa~aga~~iS-pFvgRi~D~~~d~~~~I~~~~~iy~~y~~~~~~t~vas~ 180 (239)
T COG0176 127 AQALLAAEAGATYIS-PFVGRIDDWGIDGMLGIAEAREIYDYYKQHGAKTLVASA 180 (239)
T ss_pred HHHHHHHHhCCeEEE-eecchHHhhccCchHHHHHHHHHHHHhccccceEEEecC
Confidence 444433346789999 99999 45555678899999988776 469999875
No 235
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=31.24 E-value=1.8e+02 Score=32.58 Aligned_cols=56 Identities=13% Similarity=0.223 Sum_probs=42.5
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhhh--c----CccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHh
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAEC--F----DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 212 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~~--v----dkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake 212 (724)
++.+++|+.+|=++ +..-+...++. + |-+.+.+...|.-. ...++.+.|..
T Consensus 252 ~~~~~iPIa~gEs~~~~~~~~~li~~~a~~~~~div~~d~~~~GGit----------------------~~~kia~lA~a 309 (385)
T cd03326 252 ADHYDGPIATGENLFSLQDARNLLRYGGMRPDRDVLQFDPGLSYGLP----------------------EYLRMLDVLEA 309 (385)
T ss_pred HhhCCCCEEcCCCcCCHHHHHHHHHhCCccccCCEEEeCchhhCCHH----------------------HHHHHHHHHHH
Confidence 33689999999875 44444455553 4 99999999998744 36789999999
Q ss_pred cCCcE
Q 004907 213 YGRAV 217 (724)
Q Consensus 213 ~g~~I 217 (724)
+|+++
T Consensus 310 ~gi~~ 314 (385)
T cd03326 310 HGWSR 314 (385)
T ss_pred cCCCC
Confidence 99985
No 236
>KOG1447 consensus GTP-specific succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=31.05 E-value=55 Score=36.08 Aligned_cols=43 Identities=37% Similarity=0.624 Sum_probs=30.2
Q ss_pred eeeeecCCC-CCCCCceeeecC-CCceeEeeecceeeeecCChhHHHHHHH
Q 004907 660 MGCIVNGPG-EMADADFGYVGG-APGKIDLYVGKTVVKRGIAMEQATDALI 708 (724)
Q Consensus 660 MGCIVNGPG-EmadAD~GyvGg-~pGki~Ly~gke~V~~~Ipeeeavd~Li 708 (724)
.+|.|||-| -|+.-|+..--| -|-. -|=.|+ +|.|++...++.
T Consensus 285 IaClVNGAGLAMATmDiIkLnGGePAN-FLDvGG-----gV~EdqV~~Af~ 329 (412)
T KOG1447|consen 285 IACLVNGAGLAMATMDIIKLNGGEPAN-FLDVGG-----GVKEDQVYQAFK 329 (412)
T ss_pred eEEEEccchhhhheeeeEEecCCCCcc-eeeccC-----cccHHHHHHHhh
Confidence 489999999 999999987755 4433 244555 567776665543
No 237
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=30.97 E-value=1.2e+02 Score=32.49 Aligned_cols=77 Identities=22% Similarity=0.342 Sum_probs=50.9
Q ss_pred HHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 131 CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
++.+.++|.+.|+.+-|--|= ++.-...|.+. +|.|=+.-|.|++- | ++++-.+|+++|.+ -.+.
T Consensus 112 l~~~i~~l~~~gI~VSLFiDP--~~~qi~~A~~~GAd~VELhTG~YA~a---~-----~~~~~~~el~~i~~----aa~~ 177 (237)
T TIGR00559 112 LCELVKRFHAAGIEVSLFIDA--DKDQISAAAEVGADRIEIHTGPYANA---Y-----NKKEMAEELQRIVK----ASVH 177 (237)
T ss_pred HHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhhhcC---C-----CchhHHHHHHHHHH----HHHH
Confidence 444555666779988888553 44555566666 99999999999872 2 22333455665554 6677
Q ss_pred HHhcCCcEEEeeccCC
Q 004907 210 CKKYGRAVRIGTNHGS 225 (724)
Q Consensus 210 ake~g~~IRIGvN~GS 225 (724)
|++.|+ +||+|-
T Consensus 178 A~~lGL----~VnAGH 189 (237)
T TIGR00559 178 AHSLGL----KVNAGH 189 (237)
T ss_pred HHHcCC----EEecCC
Confidence 888774 788873
No 238
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=30.75 E-value=98 Score=33.63 Aligned_cols=72 Identities=14% Similarity=0.133 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHhcCCcEEEeeccCC------CchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHH
Q 004907 201 EVFSPLVEKCKKYGRAVRIGTNHGS------LSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQ 274 (724)
Q Consensus 201 e~~~~vv~~ake~g~~IRIGvN~GS------L~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~ 274 (724)
..+.+||+.||++|+.|=+=+|+-- |++. | -+.++.++++|-.=|++--=.+|-+.|++
T Consensus 73 ~dl~elv~Ya~~KgVgi~lw~~~~~~~~~~~~~~~-----------~----~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~ 137 (273)
T PF10566_consen 73 FDLPELVDYAKEKGVGIWLWYHSETGGNVANLEKQ-----------L----DEAFKLYAKWGVKGVKIDFMDRDDQEMVN 137 (273)
T ss_dssp --HHHHHHHHHHTT-EEEEEEECCHTTBHHHHHCC-----------H----HHHHHHHHHCTEEEEEEE--SSTSHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEeCCcchhhHhHHHH-----------H----HHHHHHHHHcCCCEEeeCcCCCCCHHHHH
Confidence 3578899999999999998888765 3222 2 34677899999999999988999999999
Q ss_pred HHHHHHHHhhcCC
Q 004907 275 AYRLLVAEMYVHG 287 (724)
Q Consensus 275 Ayrlla~~m~~~g 287 (724)
-|+.+++...+..
T Consensus 138 ~y~~i~~~AA~~~ 150 (273)
T PF10566_consen 138 WYEDILEDAAEYK 150 (273)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999865443
No 239
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis]
Probab=30.04 E-value=21 Score=31.46 Aligned_cols=14 Identities=43% Similarity=0.826 Sum_probs=11.8
Q ss_pred ceeecCCCCccccc
Q 004907 623 TEYVSCPSCGRTLF 636 (724)
Q Consensus 623 te~ISCPsCGRTlf 636 (724)
.-.|.|++||+||.
T Consensus 36 st~V~C~~CG~~l~ 49 (67)
T COG2051 36 STVVTCLICGTTLA 49 (67)
T ss_pred ceEEEecccccEEE
Confidence 46799999999965
No 240
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=29.87 E-value=1.3e+02 Score=32.99 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=35.4
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 270 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 270 (724)
.+.++++.+|++|+.+.|=+|. +++ +.++.+ ..+.+.+.||+|+.|..
T Consensus 146 ~l~eli~~~k~~Gi~~~L~TNG-~~~-------------------e~l~~L-~~~~d~i~VSLda~~~e 193 (322)
T PRK13762 146 YLPELIEEFHKRGFTTFLVTNG-TRP-------------------DVLEKL-EEEPTQLYVSLDAPDEE 193 (322)
T ss_pred hHHHHHHHHHHcCCCEEEECCC-CCH-------------------HHHHHH-HhcCCEEEEEccCCCHH
Confidence 4788999999999988887775 551 122233 44678999999999843
No 241
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=29.86 E-value=3.2e+02 Score=28.70 Aligned_cols=128 Identities=15% Similarity=0.173 Sum_probs=72.4
Q ss_pred CCCcceeecCCC---CHHHHHHHh----hh-cCccccCCC----CCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 142 NYNIPLVADIHF---APSVALRVA----EC-FDKIRVNPG----NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 142 ~~~iPLVADIHF---~~~lAl~a~----~~-vdkiRINPG----Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
..++|+++|+-| +..-+...+ +. ++.|=|.-+ .-|.-. +...++.||+.+ +++..+++
T Consensus 67 ~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~---~~~~~~~ee~~~-------ki~aa~~a 136 (243)
T cd00377 67 AVDLPVIADADTGYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHG---GKVLVPIEEFVA-------KIKAARDA 136 (243)
T ss_pred hccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCC---CCeecCHHHHHH-------HHHHHHHH
Confidence 468999999999 653333333 33 556666222 111100 012334555443 34445556
Q ss_pred HHh-cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCC
Q 004907 210 CKK-YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGW 288 (724)
Q Consensus 210 ake-~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~ 288 (724)
++. -+..|=-++.+=.. | +.+ ++.|++.++...+.|=+=+-+-... ..+-++.++++ .
T Consensus 137 ~~~~~~~~IiARTDa~~~--------~--~~~-~~eai~Ra~ay~~AGAD~v~v~~~~-----~~~~~~~~~~~-----~ 195 (243)
T cd00377 137 RDDLPDFVIIARTDALLA--------G--EEG-LDEAIERAKAYAEAGADGIFVEGLK-----DPEEIRAFAEA-----P 195 (243)
T ss_pred HhccCCeEEEEEcCchhc--------c--CCC-HHHHHHHHHHHHHcCCCEEEeCCCC-----CHHHHHHHHhc-----C
Confidence 655 34444333221111 0 112 6779999999999997655553322 44777788888 7
Q ss_pred CccccccccccC
Q 004907 289 DYPLHLGVTEAG 300 (724)
Q Consensus 289 dYPLHLGVTEAG 300 (724)
+-|+-+-.|+-+
T Consensus 196 ~~Pl~~~~~~~~ 207 (243)
T cd00377 196 DVPLNVNMTPGG 207 (243)
T ss_pred CCCEEEEecCCC
Confidence 889988877655
No 242
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=29.56 E-value=2.6e+02 Score=27.77 Aligned_cols=53 Identities=21% Similarity=0.227 Sum_probs=32.3
Q ss_pred CcceeecCCCC-H-H-HHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 144 NIPLVADIHFA-P-S-VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 144 ~iPLVADIHF~-~-~-lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
+.++++|+|+- + . .+..++++ +|-|=+..-. +. ....++++.|+++|+++=+
T Consensus 52 ~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~-~~-----------------------~~~~~~i~~~~~~g~~~~~ 107 (206)
T TIGR03128 52 DRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVA-DD-----------------------ATIKGAVKAAKKHGKEVQV 107 (206)
T ss_pred CCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccC-CH-----------------------HHHHHHHHHHHHcCCEEEE
Confidence 57899999864 2 2 25555665 6655433221 10 1246789999999987744
Q ss_pred e
Q 004907 220 G 220 (724)
Q Consensus 220 G 220 (724)
+
T Consensus 108 ~ 108 (206)
T TIGR03128 108 D 108 (206)
T ss_pred E
Confidence 4
No 243
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=29.52 E-value=8.2e+02 Score=27.20 Aligned_cols=112 Identities=17% Similarity=0.251 Sum_probs=68.7
Q ss_pred CCCCChhhhhHHHHHHHHHhhccCCcceeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCcee
Q 004907 597 APGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFG 676 (724)
Q Consensus 597 l~~~~~~~i~~v~~~ILQa~r~R~~kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~G 676 (724)
.+.++..-...++.+|.|.++-+ =.-||++.+=|=| +-.+.+.+|++-.+++=+-+=-.|+++.+.|+ ...=
T Consensus 147 NpaN~~aH~~tT~~EI~~~~~g~--~d~fVagvGTGGT---itGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~---g~~~ 218 (300)
T COG0031 147 NPANPEAHYETTGPEIWQQTDGK--VDAFVAGVGTGGT---ITGVARYLKERNPNVRIVAVDPEGSVLLSGGE---GPHK 218 (300)
T ss_pred CCccHHHHHhhhHHHHHHHhCCC--CCEEEEeCCcchh---HHHHHHHHHhhCCCcEEEEECCCCCcccCCCC---CCcc
Confidence 34455555567888999987766 2346776665555 34556666666555442333346777777766 2222
Q ss_pred eecCCCceeE--eee--cceeeeecCChhHHHHHHHHHHHhccccC
Q 004907 677 YVGGAPGKID--LYV--GKTVVKRGIAMEQATDALIQLIKDHGRWA 718 (724)
Q Consensus 677 yvGg~pGki~--Ly~--gke~V~~~Ipeeeavd~Li~lIk~~g~W~ 718 (724)
+-|=+.+.+. +.. =.+++. |+.++|+....+|.+++|.-+
T Consensus 219 i~GIG~~~ip~~~~~~~iD~v~~--V~d~~A~~~~r~La~~eGilv 262 (300)
T COG0031 219 IEGIGAGFVPENLDLDLIDEVIR--VSDEEAIATARRLAREEGLLV 262 (300)
T ss_pred cCCCCCCcCCcccccccCceEEE--ECHHHHHHHHHHHHHHhCeee
Confidence 3332333332 111 345655 999999999999999998754
No 244
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=29.50 E-value=1.8e+02 Score=31.61 Aligned_cols=125 Identities=15% Similarity=0.234 Sum_probs=74.7
Q ss_pred cCCCCCeEEeec--cCCCCCCHHHHHHHHHHHHH---------HHH----HHHHHhhhcC-------CCcceee------
Q 004907 98 IGSEHPIRVQTM--TTNDTKDVAGTVEEVMRIAD---------ACF----EIKNSLVQKN-------YNIPLVA------ 149 (724)
Q Consensus 98 IGG~~PI~VQSM--t~t~T~Dv~atv~Qi~~L~~---------a~~----~I~~~L~~~~-------~~iPLVA------ 149 (724)
|||+ -+.|+++ .++|..+.+.+..|+++|.+ .++ .+.+.+-... ..++.+-
T Consensus 41 I~gd-~~~V~~Lvp~g~dPH~yep~p~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~~~~~v~~~~~~gi~~~~~~~~~~ 119 (311)
T PRK09545 41 IADG-VTETEVLLPDGASPHDYSLRPSDVKRLQSADLVVWVGPEMEAFLEKPVSKLPENKQVTIAQLPDVKPLLMKGAHD 119 (311)
T ss_pred HcCC-CceEEeccCCCCCCcCCCCCHHHHHHHhcCCEEEEeCCChHhHHHHHHHhcCCCCeEEEecCCCccccccccccc
Confidence 5553 4556666 56888999999999999999 233 3333221110 1122110
Q ss_pred ------------------------cCC--CCHHHHHHHhhh-cCc-cccCCCCCcchhhhhhccccchHHHHHHhhhhhh
Q 004907 150 ------------------------DIH--FAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEE 201 (724)
Q Consensus 150 ------------------------DIH--F~~~lAl~a~~~-vdk-iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e 201 (724)
|=| +||..|...++. .++ +++.|.|=..-++ .-+.|.++|+.+++
T Consensus 120 ~~~~~~~~~~~~~~~~~~h~~~~~dPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~-------N~~~~~~~L~~l~~ 192 (311)
T PRK09545 120 DHHDDDHDHAGHEKSDEDHHHGEYNMHIWLSPEIARATAVAIHDKLVELMPQSKAKLDA-------NLKDFEAQLAQTDK 192 (311)
T ss_pred ccccccccccccccCCccCcCCCCCCcccCCHHHHHHHHHHHHHHHHHhChhhHHHHHH-------HHHHHHHHHHHHHH
Confidence 111 234556555554 333 3689988422111 14679999999999
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcC
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG 235 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg 235 (724)
.++..+..++. .. +-+-|.++ ..+.++||
T Consensus 193 ~~~~~l~~~~~--~~--~i~~H~af-~Yf~~~yg 221 (311)
T PRK09545 193 QIGNQLAPVKG--KG--YFVFHDAY-GYFEKHYG 221 (311)
T ss_pred HHHHHhhccCC--Cc--EEEECchH-HHHHHhCC
Confidence 99998887653 33 35677776 45666676
No 245
>PRK01362 putative translaldolase; Provisional
Probab=29.23 E-value=3.1e+02 Score=28.74 Aligned_cols=65 Identities=18% Similarity=0.264 Sum_probs=48.0
Q ss_pred CCeEEeeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cC
Q 004907 102 HPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 166 (724)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vd 166 (724)
.||.+|-. -.|.++.++|.++|.+ +++.|++ |.++|+++-+=+ =|...-|+.|+++ ++
T Consensus 52 g~vs~qv~----~~d~~~m~~~a~~l~~~~~~i~iKIP~T~~G~~a~~~-L~~~Gi~v~~T~--vfs~~Qa~~Aa~aGa~ 124 (214)
T PRK01362 52 GPVSAEVI----ALDAEGMIKEGRELAKIAPNVVVKIPMTPEGLKAVKA-LSKEGIKTNVTL--IFSANQALLAAKAGAT 124 (214)
T ss_pred CCEEEEEe----eCCHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHH-HHHCCCceEEee--ecCHHHHHHHHhcCCc
Confidence 58999975 5789999999999988 6677765 566666555444 6889999999987 66
Q ss_pred ccccCCC
Q 004907 167 KIRVNPG 173 (724)
Q Consensus 167 kiRINPG 173 (724)
=|-+.=|
T Consensus 125 yispyvg 131 (214)
T PRK01362 125 YVSPFVG 131 (214)
T ss_pred EEEeecc
Confidence 5544333
No 246
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=29.02 E-value=2.6e+02 Score=30.44 Aligned_cols=97 Identities=16% Similarity=0.198 Sum_probs=54.5
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCch--------HHHhhcCCCchHHHHHHHHHHHHHHH-CCCCcEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSD--------RIMSYYGDSPRGMVESAFEFARICRK-LDFHNFLF 262 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~--------~il~~yg~t~~amVeSAle~~~i~e~-~~F~divi 262 (724)
.+|+++|.+.|..-.+.|++.|.- |=|=.-||-|-. .--.+||.+.+.=.+-.+|-++-.++ .| .|+.|
T Consensus 146 ~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG-~d~~v 224 (336)
T cd02932 146 REEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP-EDKPL 224 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC-CCceE
Confidence 456677888888888888887754 223333454322 33445776555545555666665554 33 46789
Q ss_pred EEecCCh-----hHHHHHHHHHHHHhhcCCCCc
Q 004907 263 SMKASNP-----VVMVQAYRLLVAEMYVHGWDY 290 (724)
Q Consensus 263 S~KaSnv-----~~~v~Ayrlla~~m~~~g~dY 290 (724)
++|-|-. -...+-...+++++++.|.||
T Consensus 225 ~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~ 257 (336)
T cd02932 225 FVRISATDWVEGGWDLEDSVELAKALKELGVDL 257 (336)
T ss_pred EEEEcccccCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 9997710 011233344555555556653
No 247
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=29.02 E-value=1.9e+02 Score=29.63 Aligned_cols=89 Identities=15% Similarity=0.107 Sum_probs=57.5
Q ss_pred hHHHHHHHHHhcCCcEEEeecc--CCCchHHHhhcCC--CchHHHHHHHHHHHHHHHCCCCcEEEEEecC--------Ch
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNH--GSLSDRIMSYYGD--SPRGMVESAFEFARICRKLDFHNFLFSMKAS--------NP 269 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~--GSL~~~il~~yg~--t~~amVeSAle~~~i~e~~~F~diviS~KaS--------nv 269 (724)
.++++-+.++++|+.+ .+++. ++++..+.. ++ .-+..++..-+.++++..+|-.-|++..=.. ..
T Consensus 48 ~~~~l~~~~~~~gl~v-~s~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~~~ 124 (275)
T PRK09856 48 GIKQIKALAQTYQMPI-IGYTPETNGYPYNMML--GDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNVIW 124 (275)
T ss_pred HHHHHHHHHHHcCCeE-EEecCcccCcCccccC--CCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHHHH
Confidence 3566788899999987 34432 222222111 11 1245677777888999999999998854211 13
Q ss_pred hHHHHHHHHHHHHhhcCCCCcccc
Q 004907 270 VVMVQAYRLLVAEMYVHGWDYPLH 293 (724)
Q Consensus 270 ~~~v~Ayrlla~~m~~~g~dYPLH 293 (724)
..+++.++.|++...+.|+.+-+|
T Consensus 125 ~~~~~~l~~l~~~a~~~gv~l~iE 148 (275)
T PRK09856 125 GRLAENLSELCEYAENIGMDLILE 148 (275)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEe
Confidence 566778888888877777666555
No 248
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=28.86 E-value=1.4e+02 Score=33.58 Aligned_cols=69 Identities=26% Similarity=0.339 Sum_probs=49.6
Q ss_pred hhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHH
Q 004907 196 LQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQA 275 (724)
Q Consensus 196 le~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~A 275 (724)
|.+|+++.+.+++.|+.+||-+ .||+-+ +|..| +.++.++..|..-|+ .|+....
T Consensus 10 l~~ieeNak~~~~~a~~~gI~~-~~vtK~---------~~g~~--------~iae~l~~~Gi~~ia----esr~~n~--- 64 (353)
T COG3457 10 LDKIEENAKVLQETAARYGIEL-YGVTKQ---------FGGDP--------FIAEALLALGIEGIA----ESRIDNA--- 64 (353)
T ss_pred HHHHHHhHHHHHHHHHHcCCEE-EEEEee---------ccCCh--------HHHHHHHhcCcceee----ehhHHHH---
Confidence 5688999999999999999988 466432 33334 366778888987765 3344332
Q ss_pred HHHHHHHhhcCCCCccccc
Q 004907 276 YRLLVAEMYVHGWDYPLHL 294 (724)
Q Consensus 276 yrlla~~m~~~g~dYPLHL 294 (724)
.+|.+.|+.||.||
T Consensus 65 -----~~lr~~g~~~~~~L 78 (353)
T COG3457 65 -----IRLREAGCTIPGHL 78 (353)
T ss_pred -----HHHHHcCCCcCceE
Confidence 34667799999887
No 249
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=28.54 E-value=9.7e+02 Score=27.70 Aligned_cols=75 Identities=13% Similarity=0.254 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCC---CcEEEEEecCChhHHHHHHHHHHH
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF---HNFLFSMKASNPVVMVQAYRLLVA 281 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F---~diviS~KaSnv~~~v~Ayrlla~ 281 (724)
++++..++.|+ .||-+--=|.++++++.++... -++...+.++.|+++|+ -++++-+=--+..++.+.++.+.+
T Consensus 288 ell~~l~~aG~-~~v~iGiES~~~~~L~~~~K~~--t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~ 364 (497)
T TIGR02026 288 DILHLYRRAGL-VHISLGTEAAAQATLDHFRKGT--TTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLD 364 (497)
T ss_pred HHHHHHHHhCC-cEEEEccccCCHHHHHHhcCCC--CHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHH
Confidence 46677778886 3655555667788999987321 14556778899999998 467788877777777777776654
Q ss_pred H
Q 004907 282 E 282 (724)
Q Consensus 282 ~ 282 (724)
.
T Consensus 365 l 365 (497)
T TIGR02026 365 W 365 (497)
T ss_pred c
Confidence 3
No 250
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=28.54 E-value=1.5e+02 Score=31.32 Aligned_cols=55 Identities=25% Similarity=0.478 Sum_probs=43.8
Q ss_pred cCC-CchHHHHHHHHHHHHHH-HCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccc
Q 004907 234 YGD-SPRGMVESAFEFARICR-KLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE 298 (724)
Q Consensus 234 yg~-t~~amVeSAle~~~i~e-~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTE 298 (724)
||. +.+.+.+-+++.++.|+ +.|-+-|+|-| |+. ...+|..|.++ ++.| .+|+.|
T Consensus 37 YG~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaC---NTA-~a~~~~~l~~~-----~~iP-ii~iie 93 (251)
T TIGR00067 37 YGEKSPEFILEYVLELLTFLKERHNIKLLVVAC---NTA-SALALEDLQRN-----FDFP-VVGVIE 93 (251)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeC---chH-HHHHHHHHHHH-----CCCC-EEeecH
Confidence 774 67889999999999999 99999999998 765 44568889888 6777 455443
No 251
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=28.53 E-value=4.6e+02 Score=29.41 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHHH
Q 004907 204 SPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLV 280 (724)
Q Consensus 204 ~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS---~KaSnv~~~v~Ayrlla 280 (724)
...++.+|+.|.- ||=|.-=||+++...+. |..+.+...++-++-+.+.||..++|. ||.-|-.+..+-.+...
T Consensus 101 ~~~a~~Lk~AGl~-rVNVSLDsld~e~f~~I--T~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~~~ 177 (322)
T COG2896 101 ARRAADLKEAGLD-RVNVSLDSLDPEKFRKI--TGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEFAK 177 (322)
T ss_pred HHHHHHHHHcCCc-EEEeecccCCHHHHHHH--hCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHHHh
Confidence 3455666666654 55665667777766665 333448999999999999999988775 57777776666555555
Q ss_pred HH
Q 004907 281 AE 282 (724)
Q Consensus 281 ~~ 282 (724)
.+
T Consensus 178 ~~ 179 (322)
T COG2896 178 ER 179 (322)
T ss_pred hc
Confidence 44
No 252
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=28.18 E-value=2.2e+02 Score=30.72 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=44.8
Q ss_pred hhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHH
Q 004907 199 IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL 278 (724)
Q Consensus 199 I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrl 278 (724)
+++.++.++++|+++|+++ |+-.++ + +.++.+.+.||+-+.++. |+..+.++.+.
T Consensus 195 v~~ai~~v~~a~~~~Gk~~--G~~~~~------------~--------~~a~~~~~~G~~~v~~g~---D~~~l~~~~~~ 249 (267)
T PRK10128 195 VQRIIETSIRRIRAAGKAA--GFLAVD------------P--------DMAQKCLAWGANFVAVGV---DTMLYTDALDQ 249 (267)
T ss_pred HHHHHHHHHHHHHHcCCeE--EEcCCC------------H--------HHHHHHHHcCCcEEEECh---HHHHHHHHHHH
Confidence 4567788999999999998 432222 1 344556689998777765 88889999888
Q ss_pred HHHHhh
Q 004907 279 LVAEMY 284 (724)
Q Consensus 279 la~~m~ 284 (724)
..+.+.
T Consensus 250 ~~~~~~ 255 (267)
T PRK10128 250 RLAMFK 255 (267)
T ss_pred HHHHHh
Confidence 888753
No 253
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.11 E-value=4.1e+02 Score=27.57 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=30.0
Q ss_pred hhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcC-CCc---hHHHHHHHHHHHHHHHCCC
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSP---RGMVESAFEFARICRKLDF 257 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg-~t~---~amVeSAle~~~i~e~~~F 257 (724)
.+.++..++.|++.|.+ +|.++.+... ++ ++. +.++++--+-++++++.|.
T Consensus 93 ~~~~~~~i~~a~~lG~~-~v~~~~~~~~------~~~~~~~~~~~~~~~l~~l~~~A~~~Gv 147 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIR-TIQLAGYDVY------YEEHDEETRRRFREGLKEAVELAARAQV 147 (279)
T ss_pred HHHHHHHHHHHHHhCCC-EEEecCcccc------cCcCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34566699999999998 5666433211 22 122 3345544455667777665
No 254
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=28.03 E-value=2.2e+02 Score=35.26 Aligned_cols=114 Identities=23% Similarity=0.350 Sum_probs=72.5
Q ss_pred CCeEEeeCCCCChhhhhHHHHHH------HHHhhccCCcceeecCCC---CccccccHHHHHHHHHHHhcCC--C-CcEE
Q 004907 590 GDGLLLEAPGQDFDFLRDTSFNL------LQGCRMRNTKTEYVSCPS---CGRTLFDLQEISAEIREKTSHL--P-GVSI 657 (724)
Q Consensus 590 GDtIrvsl~~~~~~~i~~v~~~I------LQa~r~R~~kte~ISCPs---CGRTlfDLq~~~~~Ik~~t~hL--k-gvkI 657 (724)
+-+=||.+.+.+.+.+..+-..+ --+..+|.-| +||+ |..--=|-..+-.+++++...+ | ++|+
T Consensus 587 Tg~Qri~l~G~k~edLp~~w~~l~~~sg~ay~k~lrtvK----~Cvg~~~Cr~g~qds~~Lgi~le~~~~gl~~P~k~k~ 662 (793)
T COG1251 587 TGGQRIDLLGVKKEDLPAIWADLGMASGHAYGKALRTVK----TCVGSTFCRFGTQDSVGLGIRLEKRYEGLRTPHKVKM 662 (793)
T ss_pred cCCceeeecCCCcccchhHHHhccccchhHHHHhhhhHh----hCCCcchhhhCccchhhHhHHHHHHhccCCCCcceeE
Confidence 33446677766655553222211 1122334333 6885 6664457788889999999766 5 8999
Q ss_pred EEeeeeecCCCCCCCCceeeecCCCceeEeeecc---------eeeeecCChhHHHHHHHH
Q 004907 658 AIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGK---------TVVKRGIAMEQATDALIQ 709 (724)
Q Consensus 658 AVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gk---------e~V~~~Ipeeeavd~Li~ 709 (724)
||-||--| -+|+.-=|+|+.|. -....+|.++ +.+-+.-.+++.++-+.+
T Consensus 663 ~vSgCpr~-CaEa~~KDvGii~t-~~G~~l~vgG~~g~~~r~a~~~~~~~~e~e~l~~i~~ 721 (793)
T COG1251 663 AVSGCPRN-CAEAGIKDVGIIGT-EKGWNLYVGGNGGMKPRHADLLAKVLTEEEVLEYIDA 721 (793)
T ss_pred eeccCCcc-cccccCcceEEEec-ccCceEEeccccCcchhhhhhhhhcCCHHHHHHHHHH
Confidence 99999544 35777789999986 3445788764 345555678877664443
No 255
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=28.02 E-value=3.4e+02 Score=28.38 Aligned_cols=65 Identities=23% Similarity=0.294 Sum_probs=47.2
Q ss_pred CCeEEeeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cC
Q 004907 102 HPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 166 (724)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vd 166 (724)
.||.+|-+ ..|.++.++|.++|.+ +++.|++ |.++|+ |+-+=-=|...-|+.|+++ ++
T Consensus 52 g~vs~qv~----~~~~~~mi~~a~~l~~~~~~i~iKIP~T~~Gl~A~~~-L~~~Gi--~v~~T~vfs~~Qa~~Aa~aGa~ 124 (213)
T TIGR00875 52 GPVSAETI----SLDAEGMVEEAKELAKLAPNIVVKIPMTSEGLKAVKI-LKKEGI--KTNVTLVFSAAQALLAAKAGAT 124 (213)
T ss_pred CcEEEEEe----eCCHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHHHH-HHHCCC--ceeEEEecCHHHHHHHHHcCCC
Confidence 48999995 4579999999999988 6667765 556665 4444556889999999987 66
Q ss_pred ccccCCC
Q 004907 167 KIRVNPG 173 (724)
Q Consensus 167 kiRINPG 173 (724)
=|-..=|
T Consensus 125 yispyvg 131 (213)
T TIGR00875 125 YVSPFVG 131 (213)
T ss_pred EEEeecc
Confidence 5444333
No 256
>PRK09381 trxA thioredoxin; Provisional
Probab=27.94 E-value=1.1e+02 Score=27.03 Aligned_cols=81 Identities=17% Similarity=0.319 Sum_probs=42.8
Q ss_pred ceeec--CCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCCh
Q 004907 623 TEYVS--CPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAM 700 (724)
Q Consensus 623 te~IS--CPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipe 700 (724)
+.|-+ ||.|-. +....+++.+... ++++++-+-|-.+. .- -.+|++-+ .|. +.+|+.++.+.+ ...
T Consensus 26 v~f~~~~C~~C~~----~~p~~~~l~~~~~--~~~~~~~vd~~~~~-~~--~~~~~v~~-~Pt-~~~~~~G~~~~~-~~G 93 (109)
T PRK09381 26 VDFWAEWCGPCKM----IAPILDEIADEYQ--GKLTVAKLNIDQNP-GT--APKYGIRG-IPT-LLLFKNGEVAAT-KVG 93 (109)
T ss_pred EEEECCCCHHHHH----HhHHHHHHHHHhC--CCcEEEEEECCCCh-hH--HHhCCCCc-CCE-EEEEeCCeEEEE-ecC
Confidence 35555 777743 3333334444332 25788887775442 11 13477655 584 567887777653 222
Q ss_pred hHHHHHHHHHHHhcc
Q 004907 701 EQATDALIQLIKDHG 715 (724)
Q Consensus 701 eeavd~Li~lIk~~g 715 (724)
..-.++|.+.|.++.
T Consensus 94 ~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 94 ALSKGQLKEFLDANL 108 (109)
T ss_pred CCCHHHHHHHHHHhc
Confidence 222345666665543
No 257
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=27.70 E-value=6.9e+02 Score=25.72 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHH
Q 004907 201 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLV 280 (724)
Q Consensus 201 e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla 280 (724)
+.+.++++.+++.++.| |+-.|= +..||.. +.-.+.++-++++|.+=++|...+.+..+..+-.+...
T Consensus 105 ~~~~~l~~~~~~~~~kv-I~S~H~---------f~~tp~~--~~l~~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~ 172 (228)
T TIGR01093 105 DAVKELINIAKKGGTKI-IMSYHD---------FQKTPSW--EEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITN 172 (228)
T ss_pred HHHHHHHHHHHHCCCEE-EEeccC---------CCCCCCH--HHHHHHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHH
Confidence 34677888888877765 454331 1235522 12345677888999999999999888766544443332
Q ss_pred HHhhcCCCCccccccccccCCCCCCchh
Q 004907 281 AEMYVHGWDYPLHLGVTEAGEGEDGRMK 308 (724)
Q Consensus 281 ~~m~~~g~dYPLHLGVTEAG~~~~G~IK 308 (724)
+. .+. .+.|+ ++ =++|..|++-
T Consensus 173 ~~-~~~-~~~p~-i~---~~MG~~G~~S 194 (228)
T TIGR01093 173 KV-DEH-ADVPL-IT---MSMGDRGKIS 194 (228)
T ss_pred HH-Hhc-CCCCE-EE---EeCCCCChhH
Confidence 22 111 34453 12 2467777654
No 258
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=27.66 E-value=2.3e+02 Score=29.12 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEec
Q 004907 201 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA 266 (724)
Q Consensus 201 e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~Ka 266 (724)
+.++++++.|++.|.+ .|.+..|..+...-.. ..-+.++++.-+..+++++.| +++.+-.
T Consensus 85 ~~~~~~i~~a~~lga~-~i~~~~g~~~~~~~~~--~~~~~~~~~l~~l~~~a~~~G---v~l~lE~ 144 (258)
T PRK09997 85 DGVAAAIRYARALGNK-KINCLVGKTPAGFSSE--QIHATLVENLRYAANMLMKED---ILLLIEP 144 (258)
T ss_pred HHHHHHHHHHHHhCCC-EEEECCCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHcC---CEEEEEe
Confidence 4578899999999999 4666677653221000 012445555566667777765 4666654
No 259
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=27.55 E-value=29 Score=41.94 Aligned_cols=39 Identities=18% Similarity=0.505 Sum_probs=0.0
Q ss_pred cCCCeEEeeCCCCChhhhhHHHHHHHHHhhccCCccee-ecCCCCc
Q 004907 588 GLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEY-VSCPSCG 632 (724)
Q Consensus 588 GiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~kte~-ISCPsCG 632 (724)
++||+|.|+-+++-...+..+.. +.|.....+ -.||+||
T Consensus 391 ~iGD~V~V~raGdVIPkI~~vv~------~~~~~~~~~P~~CP~C~ 430 (689)
T PRK14351 391 NVGDRVRVKRAGDVIPYVEEVVE------KDSEGTFEFPDTCPVCD 430 (689)
T ss_pred CCCCEEEEEecCCccceeeeeec------ccCCCCCcCCCCCCCCC
No 260
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=27.23 E-value=4.2e+02 Score=28.09 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=70.0
Q ss_pred cceeecCCCCHHHHHHHhhh-----cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 145 IPLVADIHFAPSVALRVAEC-----FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 145 iPLVADIHF~~~lAl~a~~~-----vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
+|.=.|--.|+.....-+++ ++.|=+| |..|... ..|++|+.+-++ .+++.++ -.+||=.
T Consensus 11 TPf~~dg~iD~~~l~~~i~~l~~~Gv~gi~~~-Gs~GE~~------~ls~~Er~~~~~-------~~~~~~~-~~~~vi~ 75 (292)
T PRK03170 11 TPFKEDGSVDFAALRKLVDYLIANGTDGLVVV-GTTGESP------TLTHEEHEELIR-------AVVEAVN-GRVPVIA 75 (292)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEC-CcCCccc------cCCHHHHHHHHH-------HHHHHhC-CCCcEEe
Confidence 45556666676555544443 5555554 7777532 356666654433 3444443 3478878
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHHHH
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaSnv~~~v~Ayrlla~~ 282 (724)
||.+.|. +.+++.++.+++.|++-+.+.. +.| ...+++-|+.+++.
T Consensus 76 gv~~~~~----------------~~~i~~a~~a~~~G~d~v~~~pP~~~~~~-~~~i~~~~~~ia~~ 125 (292)
T PRK03170 76 GTGSNST----------------AEAIELTKFAEKAGADGALVVTPYYNKPT-QEGLYQHFKAIAEA 125 (292)
T ss_pred ecCCchH----------------HHHHHHHHHHHHcCCCEEEECCCcCCCCC-HHHHHHHHHHHHhc
Confidence 8866665 5678899999999999998843 334 47899999999987
No 261
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=27.07 E-value=1.8e+02 Score=33.70 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHH
Q 004907 204 SPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 254 (724)
Q Consensus 204 ~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~ 254 (724)
..+++.|+++||-.=|-.+|=.|+.-+..+||. ....+|+--.+++++|-+
T Consensus 113 ~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~~~~F~~Ya~~~f~ 164 (477)
T PRK15014 113 DDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFE 164 (477)
T ss_pred HHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCChHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999985 667899999999987755
No 262
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=26.88 E-value=7.5e+02 Score=25.91 Aligned_cols=121 Identities=15% Similarity=0.105 Sum_probs=65.5
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCCH-----HH--HHHHhhh-cCccc--cCCCCCcchhhhhhccccchHHHHHHhhhh
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFAP-----SV--ALRVAEC-FDKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHI 199 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~~-----~l--Al~a~~~-vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ele~I 199 (724)
-++..++.|...+..+=-|.++.|-. ++ +.+|++. ++-|. ||-|.+-.++ ++.+
T Consensus 45 ~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~----------------~~~v 108 (221)
T PRK00507 45 YVKLAAELLKGSDVKVCTVIGFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGD----------------WDAV 108 (221)
T ss_pred HHHHHHHHhCCCCCeEEEEecccCCCChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCC----------------HHHH
Confidence 45566666533333344455665543 22 2244443 55544 6777664432 2344
Q ss_pred hhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHH
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 279 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrll 279 (724)
.+.++.+++.| .++++.+=+..+=|+++-+. .-.++|.+.|.+-|+-|-=-+....+.+..+++
T Consensus 109 ~~ei~~v~~~~--~~~~lKvIlEt~~L~~e~i~--------------~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m 172 (221)
T PRK00507 109 EADIRAVVEAA--GGAVLKVIIETCLLTDEEKV--------------KACEIAKEAGADFVKTSTGFSTGGATVEDVKLM 172 (221)
T ss_pred HHHHHHHHHhc--CCceEEEEeecCcCCHHHHH--------------HHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHH
Confidence 44455666666 57888888888878665332 345577777777333332111123456777777
Q ss_pred HHH
Q 004907 280 VAE 282 (724)
Q Consensus 280 a~~ 282 (724)
.+.
T Consensus 173 ~~~ 175 (221)
T PRK00507 173 RET 175 (221)
T ss_pred HHH
Confidence 666
No 263
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=26.61 E-value=56 Score=26.13 Aligned_cols=27 Identities=37% Similarity=0.749 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhhccCCcceeecCCCCcccccc
Q 004907 606 RDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFD 637 (724)
Q Consensus 606 ~~v~~~ILQa~r~R~~kte~ISCPsCGRTlfD 637 (724)
..++..+||+..|-.. .||.||-.||-
T Consensus 3 k~m~~~LL~G~~ML~~-----~Cp~C~~PL~~ 29 (41)
T PF06677_consen 3 KKMGEYLLQGWTMLDE-----HCPDCGTPLMR 29 (41)
T ss_pred HHHHHHHHHhHhHhcC-----ccCCCCCeeEE
Confidence 4567888998877765 49999877763
No 264
>PRK15452 putative protease; Provisional
Probab=26.52 E-value=2.8e+02 Score=32.08 Aligned_cols=129 Identities=13% Similarity=0.137 Sum_probs=85.9
Q ss_pred HHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhh
Q 004907 155 PSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSY 233 (724)
Q Consensus 155 ~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~ 233 (724)
+.-+.+|+++ +|.|=+-...++-+.. ...|+. +.+++.|+.|+++|+.+-+-+| .+..
T Consensus 13 ~e~l~aAi~~GADaVY~G~~~~~~R~~---~~~f~~-----------edl~eav~~ah~~g~kvyvt~n--~i~~----- 71 (443)
T PRK15452 13 LKNMRYAFAYGADAVYAGQPRYSLRVR---NNEFNH-----------ENLALGINEAHALGKKFYVVVN--IAPH----- 71 (443)
T ss_pred HHHHHHHHHCCCCEEEECCCccchhhh---ccCCCH-----------HHHHHHHHHHHHcCCEEEEEec--CcCC-----
Confidence 4555677787 9999886655554321 011221 1267789999999999999998 3322
Q ss_pred cCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhHHHH
Q 004907 234 YGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGI 313 (724)
Q Consensus 234 yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~~G~IKSaiGi 313 (724)
+.-.+...++++.+.++|.+-|+|+ |+-.+ +++.+. ..+.|+|+. ..=.|-++.++
T Consensus 72 -----e~el~~~~~~l~~l~~~gvDgvIV~----d~G~l----~~~ke~----~p~l~ih~s-------tqlni~N~~a~ 127 (443)
T PRK15452 72 -----NAKLKTFIRDLEPVIAMKPDALIMS----DPGLI----MMVREH----FPEMPIHLS-------VQANAVNWATV 127 (443)
T ss_pred -----HHHHHHHHHHHHHHHhCCCCEEEEc----CHHHH----HHHHHh----CCCCeEEEE-------ecccCCCHHHH
Confidence 2335667788899999999999986 65433 333333 136799985 34456778888
Q ss_pred HHHhhcCCCceeEEecCC
Q 004907 314 GTLLQDGLGDTIRVSLTE 331 (724)
Q Consensus 314 G~LL~~GIGDTIRVSLT~ 331 (724)
-.+...|+ -||-|+.
T Consensus 128 ~f~~~lG~---~rvvLSr 142 (443)
T PRK15452 128 KFWQQMGL---TRVILSR 142 (443)
T ss_pred HHHHHCCC---cEEEECC
Confidence 88888887 3444443
No 265
>PRK00208 thiG thiazole synthase; Reviewed
Probab=26.38 E-value=8.7e+02 Score=26.48 Aligned_cols=150 Identities=19% Similarity=0.295 Sum_probs=89.0
Q ss_pred ccCcccccccccccCCC--CceeEEEeeeecCCCCCeEEeec--cCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC-
Q 004907 70 LVPRQKYCESIHKTVRR--KTRTVMVGNVAIGSEHPIRVQTM--TTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYN- 144 (724)
Q Consensus 70 ~~~~~~Yc~s~~~~~Rr--~Tr~V~VG~V~IGG~~PI~VQSM--t~t~T~Dv~atv~Qi~~L~~a~~~I~~~L~~~~~~- 144 (724)
++|..--|.+.-...|. --|+ ++|.+=|-+.=- ..|...|+..|++..+.| .++|..
T Consensus 65 ~lpNTaG~~ta~eAv~~a~lare-------~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L-----------~~~Gf~v 126 (250)
T PRK00208 65 LLPNTAGCRTAEEAVRTARLARE-------ALGTNWIKLEVIGDDKTLLPDPIETLKAAEIL-----------VKEGFVV 126 (250)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHH-------HhCCCeEEEEEecCCCCCCcCHHHHHHHHHHH-----------HHCCCEE
Confidence 34666677765544321 1122 224444444333 345568888888765543 334665
Q ss_pred cceeecCCCCHHHHHHHhhh-cCccccCC--CCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHh-cCCcEEEe
Q 004907 145 IPLVADIHFAPSVALRVAEC-FDKIRVNP--GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK-YGRAVRIG 220 (724)
Q Consensus 145 iPLVADIHF~~~lAl~a~~~-vdkiRINP--GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake-~g~~IRIG 220 (724)
+|+++| |+..|....+. ++-| -| -=||.+.. ..+.+| ++..++ .++|+=++
T Consensus 127 lpyc~~---d~~~ak~l~~~G~~~v--mPlg~pIGsg~g------i~~~~~--------------i~~i~e~~~vpVIve 181 (250)
T PRK00208 127 LPYCTD---DPVLAKRLEEAGCAAV--MPLGAPIGSGLG------LLNPYN--------------LRIIIEQADVPVIVD 181 (250)
T ss_pred EEEeCC---CHHHHHHHHHcCCCEe--CCCCcCCCCCCC------CCCHHH--------------HHHHHHhcCCeEEEe
Confidence 789888 67777766666 7877 77 66776532 112222 333333 36777555
Q ss_pred eccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHHHHH
Q 004907 221 TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 221 vN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS---~KaSnv~~~v~Ayrlla~~ 282 (724)
-.- .|| +++..+-++|++-+++. .|+.|+..|.++++.-.+.
T Consensus 182 aGI------------~tp--------eda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av~a 226 (250)
T PRK00208 182 AGI------------GTP--------SDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAVEA 226 (250)
T ss_pred CCC------------CCH--------HHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHH
Confidence 422 344 23444455899888764 5999999999999987765
No 266
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=26.14 E-value=1.1e+03 Score=27.58 Aligned_cols=128 Identities=20% Similarity=0.299 Sum_probs=77.6
Q ss_pred cCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCc
Q 004907 110 TTNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFA 176 (724)
Q Consensus 110 t~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig 176 (724)
|..+..|++.-++.++.-.+ .+..||+.+++. +++|+=. . =-|..+.++.+ ++.
T Consensus 69 tS~~~~d~~~E~~K~~~A~~~GADtiMDLStGgdl~~iR~~il~~-s~vpvGT-V-PiYqa~~~~~~----------~~~ 135 (423)
T TIGR00190 69 TSADTSDIEEEVEKALIAIKYGADTVMDLSTGGDLDEIRKAILDA-VPVPVGT-V-PIYQAAEKVHG----------AVE 135 (423)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeEeeccCCCCHHHHHHHHHHc-CCCCccC-c-cHHHHHHHhcC----------Chh
Confidence 56788999998888777666 788999987753 4444300 0 00555544331 332
Q ss_pred chhhhhhccccchHHHHHHhhh-hhh----------hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcC-CCchHHHHH
Q 004907 177 DRRAQFEQLEYTDDEYQKELQH-IEE----------VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-DSPRGMVES 244 (724)
Q Consensus 177 ~~~k~f~~~~Ytdeey~~ele~-I~e----------~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg-~t~~amVeS 244 (724)
+ .|.+++-+.+|+ .++ --++.++.+|+.++-+-|=.-.||+=-..|...+ ..| +-|-
T Consensus 136 ~---------mt~d~~~~~ie~qa~dGVDfmTiH~Gi~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENP--lye~ 204 (423)
T TIGR00190 136 D---------MDEDDMFRAIEKQAKDGVDFMTIHAGVLLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENP--LYKN 204 (423)
T ss_pred h---------CCHHHHHHHHHHHHHhCCCEEEEccchhHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCc--hHHH
Confidence 2 344444444332 222 1357888888888888777778888777777766 344 4444
Q ss_pred HHHHHHHHHHCCCCcEEEEE
Q 004907 245 AFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 245 Ale~~~i~e~~~F~diviS~ 264 (724)
==+-++||.+ +|+.+|+
T Consensus 205 fD~lLeI~~~---yDVtlSL 221 (423)
T TIGR00190 205 FDYILEIAKE---YDVTLSL 221 (423)
T ss_pred HHHHHHHHHH---hCeeeec
Confidence 4445566666 4568887
No 267
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=26.09 E-value=2e+02 Score=33.45 Aligned_cols=52 Identities=31% Similarity=0.535 Sum_probs=46.3
Q ss_pred HHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHH
Q 004907 203 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 254 (724)
Q Consensus 203 ~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~ 254 (724)
...+++.|+++||-.=|=.+|=.|+.-+..+||. ..+.+|+--.++++.|-+
T Consensus 114 Y~~~i~~l~~~gi~p~VtL~H~~~P~~l~~~~GGW~~~~~~~~F~~ya~~~~~ 166 (474)
T PRK09852 114 YRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKMVEFFSRYARTCFE 166 (474)
T ss_pred HHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3459999999999999999999999999999985 777899999999998765
No 268
>PRK07475 hypothetical protein; Provisional
Probab=26.08 E-value=2.7e+02 Score=29.28 Aligned_cols=67 Identities=16% Similarity=0.168 Sum_probs=50.6
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
+.-|+|+-+=.|--.++++..-+ +.+++.-.+-++.|++.|-+-|+++| | ..-..|+.|++. .+-|+
T Consensus 38 ~~~pv~~~~v~g~~~~~~~~~~~---~~~~~~l~~aa~~L~~~G~d~I~~~C---g--t~~~~~~~l~~~-----~~VPv 104 (245)
T PRK07475 38 WPFPVRYKVVRGATPERVVEGDD---PSLLDAFVAAARELEAEGVRAITTSC---G--FLALFQRELAAA-----LGVPV 104 (245)
T ss_pred CCcCEEEEeeCCCCHHHHhcCCC---ccHHHHHHHHHHHHHHcCCCEEEech---H--HHHHHHHHHHHH-----cCCCE
Confidence 56799999888888888887643 34677777788899999999999999 3 345566777776 56663
No 269
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=26.05 E-value=3.4e+02 Score=28.49 Aligned_cols=116 Identities=19% Similarity=0.194 Sum_probs=80.8
Q ss_pred hhccccchHHHHHHhhhhhhhHHHHHHHHHhc-CC--cEEEeeccCCCchHHHhhcCCCchH--HHHHHHHHHHHHHHCC
Q 004907 182 FEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY-GR--AVRIGTNHGSLSDRIMSYYGDSPRG--MVESAFEFARICRKLD 256 (724)
Q Consensus 182 f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~-g~--~IRIGvN~GSL~~~il~~yg~t~~a--mVeSAle~~~i~e~~~ 256 (724)
.+..-+|+.|.+.||--=+|....++..++.. .. |.=|-+||-||-+ .+.- .+..||--. ++++..
T Consensus 14 Lk~~Glt~gEIAdELNvSreTa~WL~~r~~~~~~~~~p~Di~i~W~siG~--------s~sRl~~Is~am~Dm-~m~~~~ 84 (203)
T COG0856 14 LKSKGLTTGEIADELNVSRETATWLLTRAFKKESVPAPVDIKIDWRSIGK--------SGSRLRYISEAMADM-IMEKVS 84 (203)
T ss_pred HHHCCCcHHHhhhhhhhhHHHHHHHHhhhhhccCCCCCcceEEechhhcc--------chHHHHHHHHHHHHH-HHHhcc
Confidence 34556789999999999999999999886543 22 5578999999833 2222 233333322 788888
Q ss_pred C-CcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhH
Q 004907 257 F-HNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSA 310 (724)
Q Consensus 257 F-~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~~G~IKSa 310 (724)
| -|+|+-+-.|-++.. .+.|.+|.++-.-|--|=+-+|-|.+..|.|.|-
T Consensus 85 ~evDvVvGIa~sGvPlA----tmvA~elg~elaiY~PrK~~~de~~~~~G~iS~N 135 (203)
T COG0856 85 FEVDVVVGIAISGVPLA----TMVAYELGKELAIYHPRKHRKDEGAGKGGSISSN 135 (203)
T ss_pred ceeEEEEEEeecCccHH----HHHHHHhCCceEEEecccccccccCCcCceeecc
Confidence 8 589999999998853 2344454444345777888999888888887664
No 270
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=25.92 E-value=2.1e+02 Score=30.81 Aligned_cols=77 Identities=22% Similarity=0.348 Sum_probs=52.4
Q ss_pred HHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 131 CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
++.+.++|.+.|+.+-|--|= ++.-...|.+. ++.|=+.-|.|++.. +.++.++|+++|.+ -.+.
T Consensus 112 l~~~i~~l~~~gI~VSLFiDP--d~~qi~~A~~~GAd~VELhTG~Ya~a~--------~~~~~~~el~~i~~----aa~~ 177 (234)
T cd00003 112 LKPIIERLKDAGIRVSLFIDP--DPEQIEAAKEVGADRVELHTGPYANAY--------DKAEREAELERIAK----AAKL 177 (234)
T ss_pred HHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCcCEEEEechhhhcCC--------CchhHHHHHHHHHH----HHHH
Confidence 344555566678888877663 35555566666 999999999998732 33455667777654 6677
Q ss_pred HHhcCCcEEEeeccCC
Q 004907 210 CKKYGRAVRIGTNHGS 225 (724)
Q Consensus 210 ake~g~~IRIGvN~GS 225 (724)
|++.|+ +||+|-
T Consensus 178 a~~~GL----~VnAGH 189 (234)
T cd00003 178 ARELGL----GVNAGH 189 (234)
T ss_pred HHHcCC----EEecCC
Confidence 888774 788873
No 271
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=25.73 E-value=86 Score=36.59 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=37.0
Q ss_pred eecCCCCCeEEeeccCCC-CCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeec--CCCCHHHHHHHhhh-cCccc
Q 004907 96 VAIGSEHPIRVQTMTTND-TKDVAGTVEEVMRIADACFEIKNSLVQKNYNIPLVAD--IHFAPSVALRVAEC-FDKIR 169 (724)
Q Consensus 96 V~IGG~~PI~VQSMt~t~-T~Dv~atv~Qi~~L~~a~~~I~~~L~~~~~~iPLVAD--IHF~~~lAl~a~~~-vdkiR 169 (724)
|.+||+ |+++|. -.++ -+.|+..+.+.....++.+.+.+..+|+||| |++...++ +|+.+ +|.|=
T Consensus 311 vg~g~G------s~c~tr~~~~~--g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~-KAla~GA~~vm 379 (502)
T PRK07107 311 VGIGGG------SICITREQKGI--GRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMT-LALAMGADFIM 379 (502)
T ss_pred ECCCCC------cCcccccccCC--CccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHH-HHHHcCCCeee
Confidence 445555 666665 2332 3556666666444444444455666999999 55666665 34333 55553
No 272
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=25.57 E-value=3.2e+02 Score=28.68 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=50.7
Q ss_pred HHHHHHhcC----Cc-EEEeeccCCCchH-HHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHH
Q 004907 206 LVEKCKKYG----RA-VRIGTNHGSLSDR-IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 279 (724)
Q Consensus 206 vv~~ake~g----~~-IRIGvN~GSL~~~-il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrll 279 (724)
-++.|.+.+ +. |||-+ |+|+- +..+++.+.+..++.+.+.++.+.+.|++ +.+++--+. ....+-|..+
T Consensus 74 ~v~~a~~~~~~~~~~~i~i~~---~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~-~~~~~~~~~~ 148 (268)
T cd07940 74 DIDAAAEALKPAKVDRIHTFI---ATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLD-VEFSAEDAT-RTDLDFLIEV 148 (268)
T ss_pred hHHHHHHhCCCCCCCEEEEEe---cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCe-EEEeeecCC-CCCHHHHHHH
Confidence 356666666 43 55544 66654 45557778889999999999999999974 667765432 2346666777
Q ss_pred HHHhhc
Q 004907 280 VAEMYV 285 (724)
Q Consensus 280 a~~m~~ 285 (724)
++++.+
T Consensus 149 ~~~~~~ 154 (268)
T cd07940 149 VEAAIE 154 (268)
T ss_pred HHHHHH
Confidence 777543
No 273
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=25.41 E-value=7.9e+02 Score=25.65 Aligned_cols=121 Identities=17% Similarity=0.189 Sum_probs=69.0
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCCH-----HHH--HHHhhh-cCccc--cCCCCCcchhhhhhccccchHHHHHHhhhh
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFAP-----SVA--LRVAEC-FDKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHI 199 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~~-----~lA--l~a~~~-vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ele~I 199 (724)
-++..++.|...+..+=-|.++.|-+ +++ .+|++. +|.|= +|-|.+-++. .+.+
T Consensus 41 ~v~~a~~~l~~~~v~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~----------------~~~v 104 (211)
T TIGR00126 41 YVPLAKELLKGTEVRICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINIGALKDGN----------------EEVV 104 (211)
T ss_pred HHHHHHHHcCCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCc----------------HHHH
Confidence 45566666543333344455655543 222 255554 66655 5655553432 1234
Q ss_pred hhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHH
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 279 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrll 279 (724)
.+.+..+++.|. |+|+.+=...|-|+++.+. .-.+++.+.|-+-|+.|-=-+....+++..++|
T Consensus 105 ~~ei~~i~~~~~--g~~lKvIlE~~~L~~~ei~--------------~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m 168 (211)
T TIGR00126 105 YDDIRAVVEACA--GVLLKVIIETGLLTDEEIR--------------KACEICIDAGADFVKTSTGFGAGGATVEDVRLM 168 (211)
T ss_pred HHHHHHHHHHcC--CCeEEEEEecCCCCHHHHH--------------HHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHH
Confidence 445667888885 8899886777777663221 456788899988777762112234556666666
Q ss_pred HHH
Q 004907 280 VAE 282 (724)
Q Consensus 280 a~~ 282 (724)
.+.
T Consensus 169 ~~~ 171 (211)
T TIGR00126 169 RNT 171 (211)
T ss_pred HHH
Confidence 655
No 274
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=25.31 E-value=44 Score=40.70 Aligned_cols=44 Identities=30% Similarity=0.518 Sum_probs=30.2
Q ss_pred hhccCCcceeecCCCCccccccH----H--HHHH-HHHHHhcCCC-CcEEEE
Q 004907 616 CRMRNTKTEYVSCPSCGRTLFDL----Q--EISA-EIREKTSHLP-GVSIAI 659 (724)
Q Consensus 616 ~r~R~~kte~ISCPsCGRTlfDL----q--~~~~-~Ik~~t~hLk-gvkIAV 659 (724)
--=|.++.+-|+||.||..++=. + ...+ .|++....|+ |-=|||
T Consensus 164 P~nRRfHAQp~aCp~CGP~~~l~~~~g~~~~~~~~ai~~a~klL~~G~IvAI 215 (750)
T COG0068 164 PLNRRFHAQPIACPKCGPHLFLVNHDGEAIAEANEAIRKAAKLLKVGKIVAI 215 (750)
T ss_pred ccccccccccccCcccCCCeEEEcCCCcchhhhhHHHHHHHHHHhhCCEEEE
Confidence 34488999999999999965422 1 1122 5666667776 777777
No 275
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=25.03 E-value=1e+02 Score=34.78 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=24.2
Q ss_pred cceeecCCCCHHHHHHHhhh--cCccccCCCCCcc
Q 004907 145 IPLVADIHFAPSVALRVAEC--FDKIRVNPGNFAD 177 (724)
Q Consensus 145 iPLVADIHF~~~lAl~a~~~--vdkiRINPGNig~ 177 (724)
|=+|..-.-.+-+|.++.+. +.++=.||||-|-
T Consensus 7 vLviG~g~rehal~~~~~~~~~~~~~~~~pgn~g~ 41 (426)
T PRK13789 7 VLLIGSGGRESAIAFALRKSNLLSELKVFPGNGGF 41 (426)
T ss_pred EEEECCCHHHHHHHHHHHhCCCCCEEEEECCchHH
Confidence 44555555667777777774 7899999999864
No 276
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=24.68 E-value=5.4e+02 Score=27.82 Aligned_cols=75 Identities=24% Similarity=0.241 Sum_probs=45.2
Q ss_pred hhhhhhHHHHHHHHHhcCCcEEEeecc--CCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----Chh
Q 004907 197 QHIEEVFSPLVEKCKKYGRAVRIGTNH--GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPV 270 (724)
Q Consensus 197 e~I~e~~~~vv~~ake~g~~IRIGvN~--GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~ 270 (724)
+..-+++.+.|+.||++|..++..+-. |.-. .|.++ .+-.++.++.+.+.|-+ .|++|-| +|.
T Consensus 116 ~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~------~~~~~---~~~~~~~~~~~~~~G~d--~i~l~DT~G~~~P~ 184 (287)
T PRK05692 116 AESLERFEPVAEAAKQAGVRVRGYVSCVLGCPY------EGEVP---PEAVADVAERLFALGCY--EISLGDTIGVGTPG 184 (287)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCC------CCCCC---HHHHHHHHHHHHHcCCc--EEEeccccCccCHH
Confidence 344456788999999999998865532 2210 12222 24445677777888887 4566655 555
Q ss_pred HHHHHHHHHHHH
Q 004907 271 VMVQAYRLLVAE 282 (724)
Q Consensus 271 ~~v~Ayrlla~~ 282 (724)
.+.+-++.|.++
T Consensus 185 ~v~~lv~~l~~~ 196 (287)
T PRK05692 185 QVRAVLEAVLAE 196 (287)
T ss_pred HHHHHHHHHHHh
Confidence 555555555544
No 277
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=24.65 E-value=5.7e+02 Score=27.81 Aligned_cols=153 Identities=20% Similarity=0.357 Sum_probs=90.0
Q ss_pred ccCcccccccccccCCCCceeEEEeeeecCCCCCeEEeeccCCC--CCCHHHHHHHHHHHHHHHHHHHHHhhhcCCC-cc
Q 004907 70 LVPRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTND--TKDVAGTVEEVMRIADACFEIKNSLVQKNYN-IP 146 (724)
Q Consensus 70 ~~~~~~Yc~s~~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~--T~Dv~atv~Qi~~L~~a~~~I~~~L~~~~~~-iP 146 (724)
++|..--|.+.-...|. -+.+. .++|.+=|-+.=....+ ..|+..|++..+.| .++|.. +|
T Consensus 65 ~lpNTaG~~ta~eAv~~----a~lar-e~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L-----------~~~Gf~vlp 128 (248)
T cd04728 65 LLPNTAGCRTAEEAVRT----ARLAR-EALGTDWIKLEVIGDDKTLLPDPIETLKAAEIL-----------VKEGFTVLP 128 (248)
T ss_pred ECCCCCCCCCHHHHHHH----HHHHH-HHhCCCeEEEEEecCccccccCHHHHHHHHHHH-----------HHCCCEEEE
Confidence 34666677665554331 11111 13455656555554444 57888888755543 334665 78
Q ss_pred eeecCCCCHHHHHHHhhh-cCccccCC--CCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 147 LVADIHFAPSVALRVAEC-FDKIRVNP--GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 147 LVADIHF~~~lAl~a~~~-vdkiRINP--GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
+++| |+..|....+. ++.| -| .=||.+.. ..+. +.++.+++. .++|+=++-.-
T Consensus 129 yc~d---d~~~ar~l~~~G~~~v--mPlg~pIGsg~G------i~~~----------~~I~~I~e~---~~vpVI~egGI 184 (248)
T cd04728 129 YCTD---DPVLAKRLEDAGCAAV--MPLGSPIGSGQG------LLNP----------YNLRIIIER---ADVPVIVDAGI 184 (248)
T ss_pred EeCC---CHHHHHHHHHcCCCEe--CCCCcCCCCCCC------CCCH----------HHHHHHHHh---CCCcEEEeCCC
Confidence 8888 67788777776 8877 77 66776432 1111 122223332 46787666433
Q ss_pred CCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHHHHH
Q 004907 224 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 224 GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS---~KaSnv~~~v~Ayrlla~~ 282 (724)
| || +.+..+-++|++-+++- .|+.|+..|.++++.-.+.
T Consensus 185 ~------------tp--------eda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~a 226 (248)
T cd04728 185 G------------TP--------SDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAVEA 226 (248)
T ss_pred C------------CH--------HHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHH
Confidence 3 34 23334445888877764 5999999999999987765
No 278
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=24.62 E-value=5.9e+02 Score=29.86 Aligned_cols=111 Identities=20% Similarity=0.294 Sum_probs=75.4
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH------------------HHHHHHHHhhhcCCCcceeecCCCCHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD------------------ACFEIKNSLVQKNYNIPLVADIHFAPSVAL 159 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~------------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl 159 (724)
.|+ |-...=|||+++-.+++.-++..++|++ .+.++.+. +|+.+++||----|-.--+|.
T Consensus 137 ~G~-h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~-iK~~~~~pv~lHtH~TsG~a~ 214 (472)
T COG5016 137 HGA-HVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKA-IKKELPVPVELHTHATSGMAE 214 (472)
T ss_pred cCc-eeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHH-HHHhcCCeeEEecccccchHH
Confidence 344 7777889999999999999999999999 33333333 566788999888887765554
Q ss_pred ----HHhhh-cCccc--cCCCCCcchhhhhhccccc--hHHH-----HHHhhhhhhhHHHHHHHH
Q 004907 160 ----RVAEC-FDKIR--VNPGNFADRRAQFEQLEYT--DDEY-----QKELQHIEEVFSPLVEKC 210 (724)
Q Consensus 160 ----~a~~~-vdkiR--INPGNig~~~k~f~~~~Yt--deey-----~~ele~I~e~~~~vv~~a 210 (724)
+|+|+ +|-|= |-|=-.|...-..+...|. +-.| .++++.|.+-|+++-++=
T Consensus 215 m~ylkAvEAGvD~iDTAisp~S~gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vrkkY 279 (472)
T COG5016 215 MTYLKAVEAGVDGIDTAISPLSGGTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVRKKY 279 (472)
T ss_pred HHHHHHHHhCcchhhhhhccccCCCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHH
Confidence 77787 88775 7776666544334444443 1123 344566666666555444
No 279
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=24.52 E-value=9.3e+02 Score=26.41 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=56.0
Q ss_pred CCceEEEeeCCCCCCcc-chhHHHHHHHHHHHh-cCCCCCeEEeecccCCCCCcc-hhhHHHHHHHHHhhhcCCCeEEee
Q 004907 520 IDATMILHDLPFNEDKI-GRVQAARRLFEYLSE-NNLNFPVIHHIQFPNGIHRDD-LVIGAGTNVGALLVDGLGDGLLLE 596 (724)
Q Consensus 520 ~~~vvi~l~~~~~s~~~-~~v~~~R~l~~~l~~-~~~~~Pli~hl~~teag~~ed-~~IkSa~~iG~LL~DGiGDtIrvs 596 (724)
..|++|.+. ...-.. ........++..+.+ .....||.+||. ++.+ -.++-|+.. |+ +-|++.
T Consensus 42 ~sPvIiq~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~VPV~lHLD-----Hg~~~e~i~~ai~~------Gf-tSVM~D 107 (285)
T PRK07709 42 KSPVILGVS--EGAARHMTGFKTVVAMVKALIEEMNITVPVAIHLD-----HGSSFEKCKEAIDA------GF-TSVMID 107 (285)
T ss_pred CCCEEEEcC--cchhhhcCCHHHHHHHHHHHHHHcCCCCcEEEECC-----CCCCHHHHHHHHHc------CC-CEEEEe
Confidence 356666643 111122 234445555655543 345589999994 2222 455666655 55 889999
Q ss_pred CCCCChhhhhHHHHHHHHHhhccCCc
Q 004907 597 APGQDFDFLRDTSFNLLQGCRMRNTK 622 (724)
Q Consensus 597 l~~~~~~~i~~v~~~ILQa~r~R~~k 622 (724)
.|..|.++.....+.+.+.+.-+.-.
T Consensus 108 gS~lp~eeNi~~Trevv~~Ah~~gv~ 133 (285)
T PRK07709 108 ASHHPFEENVETTKKVVEYAHARNVS 133 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCE
Confidence 99999998888888888887765433
No 280
>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....
Probab=24.48 E-value=4.4e+02 Score=23.66 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=46.6
Q ss_pred HHHHHHHhcC-CcEEEeeccCCCchH-HHhhcCCCchHHHHHHHHHHHHHHHCCCC---cEEEEEecCChhHHHHHHHH
Q 004907 205 PLVEKCKKYG-RAVRIGTNHGSLSDR-IMSYYGDSPRGMVESAFEFARICRKLDFH---NFLFSMKASNPVVMVQAYRL 278 (724)
Q Consensus 205 ~vv~~ake~g-~~IRIGvN~GSL~~~-il~~yg~t~~amVeSAle~~~i~e~~~F~---diviS~KaSnv~~~v~Ayrl 278 (724)
+.++..+++| .-|++|++++ +++ +...++ +..-.+..++.++.|.+.|+. .+.+=.+-.|-.++.+.++.
T Consensus 91 ~~l~~l~~~~~~~i~~~l~s~--~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~~~i~~~~~~~~~e~~~~~~~ 165 (166)
T PF04055_consen 91 ELLDELKKLGVDRIRISLESL--DEESVLRIIN--RGKSFERVLEALERLKEAGIPRVIIFIVGLPGENDEEIEETIRF 165 (166)
T ss_dssp HHHHHHHHTTCSEEEEEEBSS--SHHHHHHHHS--STSHHHHHHHHHHHHHHTTSETEEEEEEEBTTTSHHHHHHHHHH
T ss_pred HHHHHHHhcCccEEecccccC--CHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHhCc
Confidence 4566677777 7788888765 455 666664 334557788899999999987 34444455555556665554
No 281
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=24.34 E-value=4.7e+02 Score=28.25 Aligned_cols=153 Identities=18% Similarity=0.233 Sum_probs=76.3
Q ss_pred CCCCCHHHHHHHHHHHHH------------HHHHHHHHhhhc-CCCcceeecCCCCHHHHHHHhhh--cCccccCCCCCc
Q 004907 112 NDTKDVAGTVEEVMRIAD------------ACFEIKNSLVQK-NYNIPLVADIHFAPSVALRVAEC--FDKIRVNPGNFA 176 (724)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~------------a~~~I~~~L~~~-~~~iPLVADIHF~~~lAl~a~~~--vdkiRINPGNig 176 (724)
|...-.+.|+..|.+-.+ --..|+++|.++ +..+|- +.-||+.+.. +..|-|.|-.|-
T Consensus 11 s~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS~~I~~kl~~~~g~~i~~-------~~eaL~~L~~~G~~~V~VQplhii 83 (262)
T PF06180_consen 11 SYPEAREKTIDAIEKAVREAFPDYDVRRAFTSRIIRKKLAERDGIKIDS-------PEEALAKLADEGYTEVVVQPLHII 83 (262)
T ss_dssp S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-HHHHHHHHHCHT------------HHHHHHHHHHCT--EEEEEE--SC
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCcEEEEchHHHHHHHHHhcCCCCcCC-------HHHHHHHHHHCCCCEEEEeeccee
Confidence 333333446666666554 344678888877 766654 6778877764 999999999997
Q ss_pred chhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHH--
Q 004907 177 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRK-- 254 (724)
Q Consensus 177 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~-- 254 (724)
.+. ||. + +...|+..+..-..|+||- -+|..+|.. .-.+...+.++.+.+
T Consensus 84 pG~-----------Ey~----~----l~~~v~~~~~~F~~i~~g~-------PLL~~~g~~--~~~~D~~~va~aL~~~~ 135 (262)
T PF06180_consen 84 PGE-----------EYE----K----LRATVEAYKHDFKKIVLGR-------PLLYTMGQE--NSPEDYEAVAEALAEEF 135 (262)
T ss_dssp SSH-----------HHH----H----HHHHHHHHCCCSSEEEEE---------SCSS-------SHHHHHHHHHHHHCCS
T ss_pred CcH-----------hHH----H----HHHHHHHhhccCCeEEecc-------ccccccccc--CChHHHHHHHHHHHHhc
Confidence 755 222 2 2233444444445677764 234434421 011122223333332
Q ss_pred --CCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcc-ccccccccCC
Q 004907 255 --LDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYP-LHLGVTEAGE 301 (724)
Q Consensus 255 --~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYP-LHLGVTEAG~ 301 (724)
..=+..+|=|=-=+..-.-.+|..|...|.+ .+|| .|+|.-|..+
T Consensus 136 ~~~~~~~a~vlmGHGt~h~an~~Y~~l~~~l~~--~~~~~v~vgtvEG~P 183 (262)
T PF06180_consen 136 PKKRKDEAVVLMGHGTPHPANAAYSALQAMLKK--HGYPNVFVGTVEGYP 183 (262)
T ss_dssp -TT-TTEEEEEEE---SCHHHHHHHHHHHHHHC--CT-TTEEEEETTSSS
T ss_pred cccCCCCEEEEEeCCCCCCccHHHHHHHHHHHh--CCCCeEEEEEeCCCC
Confidence 1234555555444444456799999999876 4556 8999988533
No 282
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=24.34 E-value=3.1e+02 Score=28.74 Aligned_cols=125 Identities=20% Similarity=0.315 Sum_probs=77.0
Q ss_pred cCCCCCeEEeecc--CCCCCCHHHHHHHHHHHHH---------HHHH-HHHHhhhcCC---------Ccceee-------
Q 004907 98 IGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIAD---------ACFE-IKNSLVQKNY---------NIPLVA------- 149 (724)
Q Consensus 98 IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~~L~~---------a~~~-I~~~L~~~~~---------~iPLVA------- 149 (724)
|||+ -+.|.|.. +.|..+.+.+-.++++|.+ .++. --++|++... .++++-
T Consensus 19 I~gd-~v~V~~lip~g~dpH~ye~~p~d~~~l~~Adlvv~~G~~le~~w~~~~~~~~~~~~~v~~~~~i~~~~~~~~~~~ 97 (266)
T cd01018 19 IAGD-TVDVVVLVPPGSNPHTYEPKPQQMKKLSEADLYFRIGLGFEEVWLERFRSNNPKMQVVNMSKGITLIPMADHHHH 97 (266)
T ss_pred HcCC-ceeEEEeeCCCCCcCCCCCCHHHHHHHHhCCEEEEcCCcchHHHHHHHHhhCCCCeEEECCCCceeccccccccc
Confidence 4554 47788874 4678999999999999999 4542 2223333211 122211
Q ss_pred -------------cCC--CCHHHHHHHhhh-cCc-cccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHh
Q 004907 150 -------------DIH--FAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 212 (724)
Q Consensus 150 -------------DIH--F~~~lAl~a~~~-vdk-iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake 212 (724)
|=| ++|..+...++. .++ .++.|.|=..-+++ -+.|.++|+.+++.++..++.++.
T Consensus 98 ~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N-------~~~~~~~L~~l~~~~~~~~~~~~~ 170 (266)
T cd01018 98 HHGEHEHHHHGNYDPHIWLSPANAKIMAENIYEALAELDPQNATYYQAN-------LDALLAELDALDSEIRTILSKLKQ 170 (266)
T ss_pred cccccccccCCCCCCccCcCHHHHHHHHHHHHHHHHHhCcccHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 111 467777766665 222 35789874221111 356999999999988888877653
Q ss_pred cCCcEEEeeccCCCchHHHhhcC
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYG 235 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg 235 (724)
.. +=+.|.++ ..+.++||
T Consensus 171 --~~--~v~~H~af-~Y~~~~yg 188 (266)
T cd01018 171 --RA--FMVYHPAW-GYFARDYG 188 (266)
T ss_pred --Ce--EEEECchh-HHHHHHcC
Confidence 22 34567766 56677776
No 283
>PRK00420 hypothetical protein; Validated
Probab=24.14 E-value=76 Score=30.40 Aligned_cols=29 Identities=38% Similarity=0.816 Sum_probs=19.2
Q ss_pred hhhhHHHHHHHHHhhccCCcceeecCCCCccccc
Q 004907 603 DFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLF 636 (724)
Q Consensus 603 ~~i~~v~~~ILQa~r~R~~kte~ISCPsCGRTlf 636 (724)
+.++..|..||++..|-. -.||.||-.+|
T Consensus 6 ~~~k~~a~~Ll~Ga~ml~-----~~CP~Cg~pLf 34 (112)
T PRK00420 6 DIVKKAAELLLKGAKMLS-----KHCPVCGLPLF 34 (112)
T ss_pred HHHHHHHHHHHhHHHHcc-----CCCCCCCCcce
Confidence 344567788888777632 45777776666
No 284
>TIGR01210 conserved hypothetical protein TIGR01210. This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.
Probab=24.06 E-value=4.2e+02 Score=28.85 Aligned_cols=54 Identities=20% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHh-hcC--CCchHHHHHHHHHHHHHHHCCCCcEEEE
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMS-YYG--DSPRGMVESAFEFARICRKLDFHNFLFS 263 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~-~yg--~t~~amVeSAle~~~i~e~~~F~diviS 263 (724)
+.++..++.|+.+||.+--=|.++++++ .++ -|+ +...+.++++.+.||. +...
T Consensus 118 e~L~~l~~aG~~~~v~iG~ES~~d~~L~~~inKg~t~----~~~~~ai~~~~~~Gi~-v~~~ 174 (313)
T TIGR01210 118 EKLEELRKIGVNVEVAVGLETANDRIREKSINKGSTF----EDFIRAAELARKYGAG-VKAY 174 (313)
T ss_pred HHHHHHHHcCCCEEEEEecCcCCHHHHHHhhCCCCCH----HHHHHHHHHHHHcCCc-EEEE
Confidence 4556677789877887777888999996 565 244 3445567778899995 5444
No 285
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=24.05 E-value=5.2e+02 Score=27.11 Aligned_cols=66 Identities=18% Similarity=0.053 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEec----CChhHHHHHHH
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA----SNPVVMVQAYR 277 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~Ka----Snv~~~v~Ayr 277 (724)
.+.+.++.||++|..+++.+-.. +..+| +..++.++.+.+.|-+. |+++- ..|..+-+-++
T Consensus 113 ~~~~~i~~ak~~G~~v~~~~~~~---------~~~~~----~~~~~~~~~~~~~G~d~--i~l~DT~G~~~P~~v~~lv~ 177 (263)
T cd07943 113 VSEQHIGAARKLGMDVVGFLMMS---------HMASP----EELAEQAKLMESYGADC--VYVTDSAGAMLPDDVRERVR 177 (263)
T ss_pred HHHHHHHHHHHCCCeEEEEEEec---------cCCCH----HHHHHHHHHHHHcCCCE--EEEcCCCCCcCHHHHHHHHH
Confidence 46789999999999888876222 11244 33455667778888774 57784 45666666666
Q ss_pred HHHHH
Q 004907 278 LLVAE 282 (724)
Q Consensus 278 lla~~ 282 (724)
.+.+.
T Consensus 178 ~l~~~ 182 (263)
T cd07943 178 ALREA 182 (263)
T ss_pred HHHHh
Confidence 66555
No 286
>KOG4080 consensus Mitochondrial ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=24.01 E-value=48 Score=33.92 Aligned_cols=65 Identities=23% Similarity=0.450 Sum_probs=31.8
Q ss_pred CCCeEEeeCCCCChhhhhHHHHHHHHHhhccCCcceeecCCCCcc-----cccc-----HHHHHHHHHHHhcCCC
Q 004907 589 LGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGR-----TLFD-----LQEISAEIREKTSHLP 653 (724)
Q Consensus 589 iGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~kte~ISCPsCGR-----TlfD-----Lq~~~~~Ik~~t~hLk 653 (724)
|+|+|++-.+-.-.....++.+.-+=.=.+-.-+.+..+||.||- ||-+ +...+++|+++...-+
T Consensus 57 ~~n~illAVPK~r~S~eK~~kRk~~~~~k~Lk~k~nl~~CP~CGh~k~a~~LC~~Cy~kV~ket~ei~~k~~iq~ 131 (176)
T KOG4080|consen 57 IDNSILLAVPKKRTSKEKKVKRKFLYTRKLLKPKDNLNTCPACGHIKPAHTLCDYCYAKVHKETSEIKKKMMIQE 131 (176)
T ss_pred cccceEEeccccccchhhhhhhhccCccccccchhccccCcccCccccccccHHHHHHHHHHHHHHHHHHHhccC
Confidence 467777766532222222222211111012234668999999996 3333 2334556666554433
No 287
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=23.99 E-value=1e+03 Score=26.43 Aligned_cols=120 Identities=21% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccc--cCCCCCcc------------------hhhhhhccccch
Q 004907 131 CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR--VNPGNFAD------------------RRAQFEQLEYTD 189 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiR--INPGNig~------------------~~k~f~~~~Ytd 189 (724)
...||+ .+++|++||+-= ..=|+.|++. +|-|| .- |--|+ .. ||+
T Consensus 104 ~~~iK~-----~~~~l~MAD~st-leEal~a~~~Gad~I~TTl~-gyT~~~~~~~~~~~~i~~~i~~~~g-------yt~ 169 (283)
T cd04727 104 HHIDKH-----KFKVPFVCGARN-LGEALRRISEGAAMIRTKGE-AGTGNVVEAVRHMRAVNGEIRKLQS-------MSE 169 (283)
T ss_pred HHHHHH-----HcCCcEEccCCC-HHHHHHHHHCCCCEEEecCC-CCCCcHHHHHHHHHHHHHHHHHHhC-------CCH
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHhcCCcE---EEeeccCCCchHHHhhcC-CCchHHHHHHHHHHHHHHHCCCCcEEEE--
Q 004907 190 DEYQKELQHIEEVFSPLVEKCKKYGRAV---RIGTNHGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFS-- 263 (724)
Q Consensus 190 eey~~ele~I~e~~~~vv~~ake~g~~I---RIGvN~GSL~~~il~~yg-~t~~amVeSAle~~~i~e~~~F~diviS-- 263 (724)
++...--....--|.-+-+.++..++|+ =|| | .|| +.++.+-+.|-+-+.+.
T Consensus 170 ~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeG--------------GI~Tp--------ena~~v~e~GAdgVaVGSA 227 (283)
T cd04727 170 EELYAVAKEIQAPYELVKETAKLGRLPVVNFAAG--------------GVATP--------ADAALMMQLGADGVFVGSG 227 (283)
T ss_pred HHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeC--------------CCCCH--------HHHHHHHHcCCCEEEEcHH
Q ss_pred -EecCChhHHHHHHHHHHHHhhcCCCCcc
Q 004907 264 -MKASNPVVMVQAYRLLVAEMYVHGWDYP 291 (724)
Q Consensus 264 -~KaSnv~~~v~Ayrlla~~m~~~g~dYP 291 (724)
+++.|+..+++.++..-++ |+-|
T Consensus 228 I~~a~dP~~~tk~f~~ai~~-----~~~~ 251 (283)
T cd04727 228 IFKSENPEKRARAIVEAVTH-----YDDP 251 (283)
T ss_pred hhcCCCHHHHHHHHHHHHHh-----cCCH
No 288
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=23.94 E-value=3.5e+02 Score=30.07 Aligned_cols=73 Identities=16% Similarity=0.079 Sum_probs=47.9
Q ss_pred HHHHHHhcCCcEEEeeccCCCchH-HHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE-ecCChhHHHHHHHHHHHHh
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDR-IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM-KASNPVVMVQAYRLLVAEM 283 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~-il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~-KaSnv~~~v~Ayrlla~~m 283 (724)
-++.|.+.|+.. |.+- -|.|+. +..+++.+++..++.+.+.++.+.+.|++ +.+++ -++ ....+-+..+++++
T Consensus 76 di~~a~~~g~~~-i~i~-~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~-v~~~~eda~--r~~~~~l~~~~~~~ 150 (363)
T TIGR02090 76 DIDKAIDCGVDS-IHTF-IATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLI-VEFSAEDAT--RTDIDFLIKVFKRA 150 (363)
T ss_pred HHHHHHHcCcCE-EEEE-EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCE-EEEEEeecC--CCCHHHHHHHHHHH
Confidence 367788888752 4442 244443 44567888999999999999999999984 67775 332 12244444444443
No 289
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=23.93 E-value=1.2e+02 Score=33.48 Aligned_cols=87 Identities=22% Similarity=0.280 Sum_probs=57.1
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
+|+.+++ .++.+.+|+|.|||-...+. .+++.+|=+-|--=|.- =..++++
T Consensus 75 GL~iL~~--vk~~~glpvvTeV~~~~q~~-~vae~~DilQIgAr~~r--------------------------qtdLL~a 125 (290)
T PLN03033 75 GLKILEK--VKVAYDLPIVTDVHESSQCE-AVGKVADIIQIPAFLCR--------------------------QTDLLVA 125 (290)
T ss_pred HHHHHHH--HHHHHCCceEEeeCCHHHHH-HHHhhCcEEeeCcHHHH--------------------------HHHHHHH
Confidence 5555555 56679999999999866655 77788899988555541 1347778
Q ss_pred HHhcCCcEEEeeccCCCchHHHhhcC--CCchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 210 CKKYGRAVRIGTNHGSLSDRIMSYYG--DSPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 210 ake~g~~IRIGvN~GSL~~~il~~yg--~t~~amVeSAle~~~i~e~~~F~divi 262 (724)
|.+.|.||= +.| | .+|+.|.-+|. .+...|=++|.+
T Consensus 126 ~~~tgkpV~------------lKk-Gq~~t~~e~~~aae----ki~~~GN~~viL 163 (290)
T PLN03033 126 AAKTGKIIN------------IKK-GQFCAPSVMRNSAE----KVRLAGNPNVMV 163 (290)
T ss_pred HHccCCeEE------------eCC-CCCCCHHHHHHHHH----HHHHcCCCcEEE
Confidence 888888882 222 4 57877766553 233444444443
No 290
>PLN02849 beta-glucosidase
Probab=23.87 E-value=2.5e+02 Score=32.85 Aligned_cols=57 Identities=19% Similarity=0.313 Sum_probs=48.4
Q ss_pred HHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHH
Q 004907 194 KELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 254 (724)
Q Consensus 194 ~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~ 254 (724)
+++++-+ .||+.|+++||--=|=..|=.|+.-+.++||. ....+|+-=.+++++|-+
T Consensus 116 ~gl~fY~----~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~v~~F~~YA~~~f~ 173 (503)
T PLN02849 116 KGLQFYK----NFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRIIKDFTAYADVCFR 173 (503)
T ss_pred HHHHHHH----HHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchHHHHHHHHHHHHHH
Confidence 3455544 49999999999999999999999999999985 777899999999998765
No 291
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=23.81 E-value=3.2e+02 Score=31.49 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=59.0
Q ss_pred HHHHHHHHHhc-CCc-EEEeeccC-----CCchHHH---hhcC--------CCchHHHHHHHHHHHHHHHCCCC--cEEE
Q 004907 203 FSPLVEKCKKY-GRA-VRIGTNHG-----SLSDRIM---SYYG--------DSPRGMVESAFEFARICRKLDFH--NFLF 262 (724)
Q Consensus 203 ~~~vv~~ake~-g~~-IRIGvN~G-----SL~~~il---~~yg--------~t~~amVeSAle~~~i~e~~~F~--divi 262 (724)
+..+++..++. ++. ||||+|.- -+.++++ ++|+ +.|..+-+.|.+-++.|.+.|.. +=-+
T Consensus 174 L~~iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI~l~nQsV 253 (417)
T TIGR03820 174 LDWILTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKKHHPVWLNTHFNHPREITASSKKALAKLADAGIPLGNQSV 253 (417)
T ss_pred HHHHHHHHhhcCCCceEEEeeccccccccccCHHHHHHHHhcCCeEEEEeCCChHhChHHHHHHHHHHHHcCCEEEeece
Confidence 34445554444 554 99999832 3445444 4554 23677899999999999999973 3334
Q ss_pred EEecCChhHHHHHHHHHHHHhhcCCC-Ccccccc
Q 004907 263 SMKASNPVVMVQAYRLLVAEMYVHGW-DYPLHLG 295 (724)
Q Consensus 263 S~KaSnv~~~v~Ayrlla~~m~~~g~-dYPLHLG 295 (724)
-+|- |.+..+.-+.|.+++-+.|+ +|=||..
T Consensus 254 LLkG--VND~~~~l~~L~~~L~~~gV~PYYl~~~ 285 (417)
T TIGR03820 254 LLAG--VNDCPRIMKKLVHKLVANRVRPYYLYQC 285 (417)
T ss_pred EECC--cCCCHHHHHHHHHHHHHCCCeeceeeec
Confidence 4554 55566666777777777787 5878753
No 292
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=23.73 E-value=2.1e+02 Score=27.85 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=46.5
Q ss_pred cHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeee--cceeeeecCChhHHHHHHHHHHHh
Q 004907 637 DLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYV--GKTVVKRGIAMEQATDALIQLIKD 713 (724)
Q Consensus 637 DLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~--gke~V~~~Ipeeeavd~Li~lIk~ 713 (724)
+|+.++.+|.+.+..+. +++.++ |-++|-.= |.++. .+++|+ -||++++++=.-.+=.-
T Consensus 50 ~L~~~v~~ink~~k~~nt~l~F~~------------dd~lg~~v-----VkI~d~~TgeVIR-qIPpee~L~l~~r~~d~ 111 (120)
T COG1334 50 KLALIVEDINKLLKSLNTHLNFSY------------DDELGELV-----VKIIDKDTGEVIR-QIPPEEALELAARMRDV 111 (120)
T ss_pred HHHHHHHHHHHHHHhhcCceEEEE------------ecccCcEE-----EEEEECCCCcchh-hCChHHHHHHHHHHHHh
Confidence 68899999999998886 888888 77776442 34454 567888 69999999855444444
Q ss_pred ccccCC
Q 004907 714 HGRWAE 719 (724)
Q Consensus 714 ~g~W~d 719 (724)
.|-..|
T Consensus 112 ~gil~d 117 (120)
T COG1334 112 IGILFD 117 (120)
T ss_pred hhheee
Confidence 454443
No 293
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=23.71 E-value=1.1e+03 Score=26.67 Aligned_cols=104 Identities=20% Similarity=0.272 Sum_probs=64.4
Q ss_pred HhhhcCCCc-ceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcC
Q 004907 137 SLVQKNYNI-PLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG 214 (724)
Q Consensus 137 ~L~~~~~~i-PLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g 214 (724)
.|.++|..+ |+++| |+..|.+.++. +..|.-=|-=||.+..- ++. +.++.+++. -+
T Consensus 192 ~L~~~Gf~v~~yc~~---d~~~a~~l~~~g~~avmPl~~pIGsg~gv------~~p----------~~i~~~~e~---~~ 249 (326)
T PRK11840 192 ILVKEGFQVMVYCSD---DPIAAKRLEDAGAVAVMPLGAPIGSGLGI------QNP----------YTIRLIVEG---AT 249 (326)
T ss_pred HHHHCCCEEEEEeCC---CHHHHHHHHhcCCEEEeeccccccCCCCC------CCH----------HHHHHHHHc---CC
Confidence 345679998 99998 56777666555 54444334557765431 111 223444444 46
Q ss_pred CcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHHHHH
Q 004907 215 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 215 ~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS---~KaSnv~~~v~Ayrlla~~ 282 (724)
+|+=+|.--| +| +++...-++|++-+-+- +||.||..|-+|.++-++.
T Consensus 250 vpVivdAGIg------------~~--------sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~a 300 (326)
T PRK11840 250 VPVLVDAGVG------------TA--------SDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEA 300 (326)
T ss_pred CcEEEeCCCC------------CH--------HHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHH
Confidence 8888876333 33 24445556898755432 5999999999999987654
No 294
>TIGR02068 cya_phycin_syn cyanophycin synthetase. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions.
Probab=23.61 E-value=2.1e+02 Score=35.45 Aligned_cols=77 Identities=23% Similarity=0.329 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCcEEEeeccCC---------------------------------CchHHHhhcC-CCchH-HHHHHHHH
Q 004907 204 SPLVEKCKKYGRAVRIGTNHGS---------------------------------LSDRIMSYYG-DSPRG-MVESAFEF 248 (724)
Q Consensus 204 ~~vv~~ake~g~~IRIGvN~GS---------------------------------L~~~il~~yg-~t~~a-mVeSAle~ 248 (724)
..++++|.++|||... .+.|| +.+++|+++| ++|++ ++.+.-+.
T Consensus 162 ~~i~~~a~~rgip~~~-l~~~~~~qlg~g~~~~~~~~~~t~~~s~ia~~ia~DK~~tk~lL~~~GIpvP~~~~~~s~~ea 240 (864)
T TIGR02068 162 AAIVDEAEKRGIPYMR-LSAGSLVQLGYGSRQKRIQATETDRTSAIAVEIACDKDLTKEILSDAGVPVPEGTVVQSAEDA 240 (864)
T ss_pred HHHHHHHHHCCCCEEE-ECCCCEEEecCCCEEEEEEeecCCCCcHHHHHHHcCHHHHHHHHHHcCcCCCCEEEECCHHHH
Confidence 4689999999999854 23343 2346788899 77765 45566666
Q ss_pred HHHHHHCCCCcEE----------EEEecCChhHHHHHHHHHHH
Q 004907 249 ARICRKLDFHNFL----------FSMKASNPVVMVQAYRLLVA 281 (724)
Q Consensus 249 ~~i~e~~~F~div----------iS~KaSnv~~~v~Ayrlla~ 281 (724)
.+.++++||.=++ ++++..|.....+||+.+.+
T Consensus 241 ~~~~~~ig~PvVVKP~~g~~G~GV~l~v~s~~el~~a~~~a~~ 283 (864)
T TIGR02068 241 WEAAQDLGYPVVIKPYDGNHGRGVTINILTRDEIESAYEAAVE 283 (864)
T ss_pred HHHHHHcCCCEEEEECCCCCccCEEEEeCCHHHHHHHHHHHHh
Confidence 6778888873222 34455667777778776653
No 295
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=23.61 E-value=6.1e+02 Score=26.75 Aligned_cols=107 Identities=21% Similarity=0.230 Sum_probs=67.9
Q ss_pred cceeecCCCCHHHHHHHhhh-----cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 145 IPLVADIHFAPSVALRVAEC-----FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 145 iPLVADIHF~~~lAl~a~~~-----vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
.|.=+|--.|+....+-+++ ++.+=+ .|+-|.. ...|++|+.+- ++.+++.++ .++|+=+
T Consensus 11 TPf~~dg~id~~~~~~~i~~l~~~Gv~gl~~-~GstGE~------~~Lt~~Er~~l-------~~~~~~~~~-~~~~vi~ 75 (289)
T PF00701_consen 11 TPFNADGSIDEDALKRLIDFLIEAGVDGLVV-LGSTGEF------YSLTDEERKEL-------LEIVVEAAA-GRVPVIA 75 (289)
T ss_dssp --BETTSSB-HHHHHHHHHHHHHTTSSEEEE-SSTTTTG------GGS-HHHHHHH-------HHHHHHHHT-TSSEEEE
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCCCEEEE-CCCCccc------ccCCHHHHHHH-------HHHHHHHcc-CceEEEe
Confidence 56667777777666555553 333322 3565542 23456655332 233455554 4589989
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEec---CChhHHHHHHHHHHHH
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA---SNPVVMVQAYRLLVAE 282 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~Ka---Snv~~~v~Ayrlla~~ 282 (724)
||.+-|. +.++++++.+++.|++-+.+..=. -+...+++-|+.+++.
T Consensus 76 gv~~~st----------------~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~ 125 (289)
T PF00701_consen 76 GVGANST----------------EEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADA 125 (289)
T ss_dssp EEESSSH----------------HHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHH
T ss_pred cCcchhH----------------HHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhh
Confidence 9977764 567899999999999999887532 3467899999999988
No 296
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=23.57 E-value=51 Score=29.12 Aligned_cols=81 Identities=16% Similarity=0.261 Sum_probs=44.2
Q ss_pred ceeec--CCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCCh
Q 004907 623 TEYVS--CPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAM 700 (724)
Q Consensus 623 te~IS--CPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipe 700 (724)
+.|.+ ||.|-+-.-.++++.++.++...+...++++-+-|--|. +. -..||+.+ -| .+.+|+.++.+.+....
T Consensus 23 v~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~--~l-~~~~~v~~-~P-tl~~~~~g~~~~~~~~g 97 (108)
T cd02996 23 VNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES--DI-ADRYRINK-YP-TLKLFRNGMMMKREYRG 97 (108)
T ss_pred EEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HH-HHhCCCCc-CC-EEEEEeCCcCcceecCC
Confidence 35656 788865444455555555433222224888888886551 21 13578876 47 46678877643223443
Q ss_pred hHHHHHHH
Q 004907 701 EQATDALI 708 (724)
Q Consensus 701 eeavd~Li 708 (724)
..-.+.|+
T Consensus 98 ~~~~~~l~ 105 (108)
T cd02996 98 QRSVEALA 105 (108)
T ss_pred CCCHHHHH
Confidence 33334444
No 297
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.35 E-value=33 Score=33.68 Aligned_cols=14 Identities=36% Similarity=0.978 Sum_probs=12.1
Q ss_pred cCCCCccccccHHH
Q 004907 627 SCPSCGRTLFDLQE 640 (724)
Q Consensus 627 SCPsCGRTlfDLq~ 640 (724)
.||+||...|||..
T Consensus 11 ~Cp~cg~kFYDLnk 24 (129)
T TIGR02300 11 ICPNTGSKFYDLNR 24 (129)
T ss_pred cCCCcCccccccCC
Confidence 59999999999854
No 298
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=23.31 E-value=28 Score=41.78 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=0.0
Q ss_pred cCCCeEEeeCCCCChhhhhHHHHHHHHHhhccCCcceeecCCCCc
Q 004907 588 GLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCG 632 (724)
Q Consensus 588 GiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~kte~ISCPsCG 632 (724)
++||+|.|+-+++-...+..+....--.-..-..-++ .||+||
T Consensus 369 ~iGD~V~V~raGdVIP~i~~vv~~~r~~~~~~~~~P~--~CP~Cg 411 (665)
T PRK07956 369 RIGDTVVVRRAGDVIPEVVGVVLEKRPGDEREIVMPT--HCPVCG 411 (665)
T ss_pred CCCCEEEEEECCCccceeeeeecccCCCCCccCcCCC--CCCCCC
No 299
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=23.29 E-value=2.5e+02 Score=27.72 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHH
Q 004907 201 EVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLV 280 (724)
Q Consensus 201 e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla 280 (724)
++|..+++..|=+ =|+||.-|.+-+-+.+ -|...++... ++.++..|-+-+=.-++..+.++=..-.
T Consensus 53 ~~l~~~i~~~kP~----vI~v~g~~~~s~~l~~-------~v~~~v~~~~--~~~~~~~i~V~~v~~~~A~lY~~S~rA~ 119 (150)
T PF14639_consen 53 ERLKKFIEKHKPD----VIAVGGNSRESRKLYD-------DVRDIVEELD--EDEQMPPIPVVIVDDEVARLYSNSKRAA 119 (150)
T ss_dssp HHHHHHHHHH--S----EEEE--SSTHHHHHHH-------HHHHHHHHTT--B-TTS-B--EEE---TTHHHHHTSHHHH
T ss_pred HHHHHHHHHcCCe----EEEEcCCChhHHHHHH-------HHHHHHHHhh--hcccCCCceEEEECcHHHHHHhcCHHHH
Confidence 3455566655443 2566554554443322 1222222222 3455677777665555555555555555
Q ss_pred HHhhcCCCCccccccccccCCCCCCchhhHHHHHHHhhc
Q 004907 281 AEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQD 319 (724)
Q Consensus 281 ~~m~~~g~dYPLHLGVTEAG~~~~G~IKSaiGiG~LL~~ 319 (724)
++ || ..+..+|.||+||--|+|
T Consensus 120 ~E-------FP----------~~p~~~R~AIslAR~lQd 141 (150)
T PF14639_consen 120 EE-------FP----------DYPPLLRYAISLARYLQD 141 (150)
T ss_dssp HH-------ST----------T--HHHHHHHHHHHHHH-
T ss_pred HH-------CC----------CCCHHHHHHHHHHHHhhC
Confidence 55 33 344689999999999885
No 300
>cd03309 CmuC_like CmuC_like. Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism.
Probab=23.13 E-value=2.1e+02 Score=31.46 Aligned_cols=60 Identities=15% Similarity=0.220 Sum_probs=35.9
Q ss_pred HhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhccCCcceeecCCCCccccccHH-HHHHHHHHH
Q 004907 584 LLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQ-EISAEIREK 648 (724)
Q Consensus 584 LL~DGiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~kte~ISCPsCGRTlfDLq-~~~~~Ik~~ 648 (724)
+.+.|--|...+... ..++++.+-+.+++..++- .-.||.||+|+=. +|.. +..+.+.+.
T Consensus 258 ~~l~GNlDp~~L~~~-~t~E~i~~~v~~~l~~~g~---~~~fIf~~~~~~~-~~~~~~~~~~~~~~ 318 (321)
T cd03309 258 VVLAGAIDDVALDTA-TWPEEDARGVAKAAAECAP---IHPFISAPTAGLP-FSIFPEVLRRVSAF 318 (321)
T ss_pred eEEEcCCChHHhcCC-CCHHHHHHHHHHHHHHhCC---CCCEEeCccCCCC-cccCHHHHHHHHHh
Confidence 344444444333222 2246677778888888764 2499999999865 4543 555555443
No 301
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=23.12 E-value=36 Score=33.68 Aligned_cols=55 Identities=24% Similarity=0.449 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhccC
Q 004907 541 AARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRN 620 (724)
Q Consensus 541 ~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~ 620 (724)
+++.|+..++.+| .|.. | | =+|.|.|-|+.=|-.+.+.-+
T Consensus 88 Ew~el~~d~~h~g---------~Y~s-G--E------~~g~G~l~C~~Cg~~~~~~~~---------------------- 127 (146)
T PF07295_consen 88 EWAELAQDLEHHG---------VYHS-G--E------VVGPGTLVCENCGHEVELTHP---------------------- 127 (146)
T ss_pred HHHHHHHHHHhcC---------Ceec-C--c------EecCceEecccCCCEEEecCC----------------------
Confidence 5677888887755 1222 1 1 146777888877777665432
Q ss_pred CcceeecCCCCcccccc
Q 004907 621 TKTEYVSCPSCGRTLFD 637 (724)
Q Consensus 621 ~kte~ISCPsCGRTlfD 637 (724)
.....||.||.+.|-
T Consensus 128 --~~l~~Cp~C~~~~F~ 142 (146)
T PF07295_consen 128 --ERLPPCPKCGHTEFT 142 (146)
T ss_pred --CcCCCCCCCCCCeee
Confidence 357789999999884
No 302
>PF00923 Transaldolase: Transaldolase; InterPro: IPR001585 Transaldolase (2.2.1.2 from EC) catalyses the reversible transfer of a three-carbon ketol unit from sedoheptulose 7-phosphate to glyceraldehyde 3-phosphate to form erythrose 4-phosphate and fructose 6-phosphate. This enzyme, together with transketolase, provides a link between the glycolytic and pentose-phosphate pathways. Transaldolase is an enzyme of about 34 kDa whose sequence has been well conserved throughout evolution. A lysine has been implicated [] in the catalytic mechanism of the enzyme; it acts as a nucleophilic group that attacks the carbonyl group of fructose-6-phosphate.; GO: 0005975 carbohydrate metabolic process; PDB: 3R5E_A 1F05_A 1I2P_A 1UCW_A 1ONR_A 1I2O_B 3KOF_A 3CWN_B 1I2N_A 1I2Q_A ....
Probab=23.11 E-value=1.8e+02 Score=31.15 Aligned_cols=62 Identities=27% Similarity=0.383 Sum_probs=47.2
Q ss_pred CCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHh
Q 004907 99 GSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 162 (724)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~ 162 (724)
|..-||.||-...-- .|.+++++|.++|.+ +++.+++ |.+. .||+-+--=|...-|+.|+
T Consensus 74 g~~G~vsvqv~p~~~-~d~e~~i~~A~~l~~~~~r~~v~IKIPaT~~Gi~A~~~-L~~~--GI~vn~T~vfs~~Qa~~aa 149 (287)
T PF00923_consen 74 GKDGPVSVQVDPRLA-YDAEEMIEEARRLHALFERPNVVIKIPATEEGIKAIKE-LEAE--GIPVNATLVFSVEQAIAAA 149 (287)
T ss_dssp TSSSEEEEE-SGGGT-TSHHHHHHHHHHHHHHHHGGTEEEEEESSHHHHHHHHH-HHHT--T-EEEEEEE-SHHHHHHHH
T ss_pred CCCceEEEecCCccc-cCHHHHHHHHHHHHHhccccCeeEECCCCHHHHHHHHH-HhhC--CceEEEEecccHHHHHHHH
Confidence 889999999655332 499999999999998 5556655 4444 4889999999999999999
Q ss_pred hh
Q 004907 163 EC 164 (724)
Q Consensus 163 ~~ 164 (724)
++
T Consensus 150 ~A 151 (287)
T PF00923_consen 150 QA 151 (287)
T ss_dssp HT
T ss_pred hc
Confidence 87
No 303
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=23.03 E-value=44 Score=28.52 Aligned_cols=12 Identities=50% Similarity=1.362 Sum_probs=10.2
Q ss_pred cceeecCCCCcc
Q 004907 622 KTEYVSCPSCGR 633 (724)
Q Consensus 622 kte~ISCPsCGR 633 (724)
+.++|-||.||.
T Consensus 1 k~~Wi~CP~Cgn 12 (55)
T PF14205_consen 1 KSEWILCPICGN 12 (55)
T ss_pred CCeEEECCCCCC
Confidence 468999999994
No 304
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=22.88 E-value=3.8e+02 Score=30.67 Aligned_cols=64 Identities=17% Similarity=0.236 Sum_probs=40.6
Q ss_pred CCcceeecCCCCHHHHHHHhhh-cCccccC--CCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 143 YNIPLVADIHFAPSVALRVAEC-FDKIRVN--PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 143 ~~iPLVADIHF~~~lAl~a~~~-vdkiRIN--PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
.++|++|=-=.++.-|..++++ +|.|++- ||-+...+. +...-+. . -..+.++.+.|+++++||
T Consensus 264 ~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~-~~~~g~p---------~-~~~i~~~~~~~~~~~vpv 330 (450)
T TIGR01302 264 PDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRI-VAGVGVP---------Q-ITAVYDVAEYAAQSGIPV 330 (450)
T ss_pred CCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccce-ecCCCcc---------H-HHHHHHHHHHHhhcCCeE
Confidence 4699999555778999999998 9999954 774422110 0000000 0 023566788899999987
No 305
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=22.63 E-value=2.7e+02 Score=32.25 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHH
Q 004907 204 SPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 254 (724)
Q Consensus 204 ~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~ 254 (724)
..||+.|+++||--=|-..|=.|+.-+..+||. ..+.+|+-=.+++++|-+
T Consensus 117 ~~lId~L~~~GI~P~VTL~H~dlP~~L~~~~GGW~n~~~v~~F~~YA~~~~~ 168 (478)
T PRK09593 117 EDIFKECHKYGIEPLVTITHFDCPMHLIEEYGGWRNRKMVGFYERLCRTLFT 168 (478)
T ss_pred HHHHHHHHHcCCEEEEEecccCCCHHHHhhcCCCCChHHHHHHHHHHHHHHH
Confidence 449999999999988999999999999999985 777899988899997755
No 306
>PRK06382 threonine dehydratase; Provisional
Probab=22.44 E-value=9.4e+02 Score=27.03 Aligned_cols=101 Identities=19% Similarity=0.326 Sum_probs=56.9
Q ss_pred HHHHHHHHHhhccCCcceeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCC------------CCc
Q 004907 607 DTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMA------------DAD 674 (724)
Q Consensus 607 ~v~~~ILQa~r~R~~kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEma------------dAD 674 (724)
.++++|++.+. .+++|-||..|=- +..-+-..+..+. -.+-|.|+-..|.-.|. ..+
T Consensus 162 t~~~Ei~eq~~----~~d~vvvpvG~GG------~~~Gv~~~~k~~~-p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~ 230 (406)
T PRK06382 162 TIGLEIMEDLP----DLDQIIVPVGGGG------LISGIALAAKHIN-PNVKIIGIESELSDSMKASLREGKIVAHTSGV 230 (406)
T ss_pred HHHHHHHHhcC----CCCEEEEeeChHH------HHHHHHHHHHHhC-CCCEEEEEEECCChHHHHHHHcCCceecCCCC
Confidence 46788888865 4678887776542 3333333333222 12334555555543221 111
Q ss_pred e---eeecCCCceeEe-----eecceeeeecCChhHHHHHHHHHHHhccccCCCC
Q 004907 675 F---GYVGGAPGKIDL-----YVGKTVVKRGIAMEQATDALIQLIKDHGRWAEPP 721 (724)
Q Consensus 675 ~---GyvGg~pGki~L-----y~gke~V~~~Ipeeeavd~Li~lIk~~g~W~dp~ 721 (724)
. |+.-+.|+.+.+ |.+ .++. |+++|+++....|.+..|-.++|.
T Consensus 231 t~a~gl~~~~~~~~~~~~~~~~~d-~~v~--V~d~ei~~a~~~l~~~~gi~~eps 282 (406)
T PRK06382 231 SICDGISVKYPGDLTFDIAKNYVD-DIVT--VTEESVSKAIYKLFEREKIVAEPS 282 (406)
T ss_pred CccccccCCCccHHHHHHHHHcCC-EEEE--ECHHHHHHHHHHHHHHcCceechH
Confidence 0 222222343321 233 4555 899999999999999999988873
No 307
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=22.30 E-value=39 Score=41.00 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=29.0
Q ss_pred hccCCcceeecCCCCccccc--cHHH---HHHHHHHHhcCCC-CcEEEE
Q 004907 617 RMRNTKTEYVSCPSCGRTLF--DLQE---ISAEIREKTSHLP-GVSIAI 659 (724)
Q Consensus 617 r~R~~kte~ISCPsCGRTlf--DLq~---~~~~Ik~~t~hLk-gvkIAV 659 (724)
.-|..+.++||||.||..++ |-.. ..+.|++...-|+ |--||+
T Consensus 132 ~~rr~h~~~~~C~~Cgp~l~l~~~~g~~~~~~~i~~aa~~L~~G~IVai 180 (711)
T TIGR00143 132 LDRRFHAQPIACPRCGPQLNFVSRGGHAEQDDALLEAAKLLKKGKIIAI 180 (711)
T ss_pred ccccCCCCCccCCCCCcEEEEEeCCCCccchHHHHHHHHHHhCCCEEEE
Confidence 55888999999999999874 3111 1245555555565 666776
No 308
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=22.13 E-value=4.4e+02 Score=29.58 Aligned_cols=109 Identities=13% Similarity=0.073 Sum_probs=60.8
Q ss_pred CHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee--ccCCCchHH
Q 004907 154 APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT--NHGSLSDRI 230 (724)
Q Consensus 154 ~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv--N~GSL~~~i 230 (724)
+.+=+..|+++ ++.|.|-..- + + .|.. .....-.+.+-+.+.++|+.||++|..+|..+ -.|.-
T Consensus 123 n~~die~A~~~g~~~v~i~~s~--S-d-~h~~-----~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p---- 189 (347)
T PLN02746 123 NLKGFEAAIAAGAKEVAVFASA--S-E-SFSK-----SNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP---- 189 (347)
T ss_pred CHHHHHHHHHcCcCEEEEEEec--C-H-HHHH-----HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCC----
Confidence 66666677777 8877765310 0 0 0000 01112234555567789999999999998444 33321
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHH
Q 004907 231 MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 282 (724)
Q Consensus 231 l~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~v~Ayrlla~~ 282 (724)
.+|.++ ++-.++.++.+.+.|-+. |+++-+ +|..+.+-++.|.++
T Consensus 190 --~~~r~~---~~~l~~~~~~~~~~Gad~--I~l~DT~G~a~P~~v~~lv~~l~~~ 238 (347)
T PLN02746 190 --IEGPVP---PSKVAYVAKELYDMGCYE--ISLGDTIGVGTPGTVVPMLEAVMAV 238 (347)
T ss_pred --ccCCCC---HHHHHHHHHHHHHcCCCE--EEecCCcCCcCHHHHHHHHHHHHHh
Confidence 112222 444566777788889886 445543 455555555555544
No 309
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=22.08 E-value=37 Score=26.06 Aligned_cols=15 Identities=27% Similarity=0.999 Sum_probs=11.5
Q ss_pred eecCCCCccccccHHH
Q 004907 625 YVSCPSCGRTLFDLQE 640 (724)
Q Consensus 625 ~ISCPsCGRTlfDLq~ 640 (724)
.|.||.|+.. |++.+
T Consensus 2 ~i~CP~C~~~-f~v~~ 16 (37)
T PF13719_consen 2 IITCPNCQTR-FRVPD 16 (37)
T ss_pred EEECCCCCce-EEcCH
Confidence 4889999876 77644
No 310
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=22.07 E-value=68 Score=23.08 Aligned_cols=11 Identities=45% Similarity=1.041 Sum_probs=9.0
Q ss_pred eecCCCCcccc
Q 004907 625 YVSCPSCGRTL 635 (724)
Q Consensus 625 ~ISCPsCGRTl 635 (724)
+++||.|++..
T Consensus 1 ~v~CPiC~~~v 11 (26)
T smart00734 1 LVQCPVCFREV 11 (26)
T ss_pred CCcCCCCcCcc
Confidence 47899999973
No 311
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=22.05 E-value=2.5e+02 Score=32.50 Aligned_cols=51 Identities=20% Similarity=0.372 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHH
Q 004907 204 SPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 254 (724)
Q Consensus 204 ~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~ 254 (724)
..|++.|+++||--=|-..|=.|+..+..+||. ....+|+-=.+++++|-+
T Consensus 111 ~~lid~L~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 111 DDLFDECLKQGIEPVVTLSHFEMPYHLVTEYGGWRNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred HHHHHHHHHcCCEEEEEecCCCCCHHHHHhcCCcCChHHHHHHHHHHHHHHH
Confidence 449999999999988999999999999999985 777899999999998755
No 312
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=22.05 E-value=3.1e+02 Score=31.06 Aligned_cols=95 Identities=21% Similarity=0.320 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHhhhcCCCcceee-------------cCCCCHHH----HHH
Q 004907 117 VAGTVEEVMRIAD-------------------ACFEIKNSLVQKNYNIPLVA-------------DIHFAPSV----ALR 160 (724)
Q Consensus 117 v~atv~Qi~~L~~-------------------a~~~I~~~L~~~~~~iPLVA-------------DIHF~~~l----Al~ 160 (724)
+-++|++..||-. .+.+|.+ .++.+.+|+|+ |+|.++.+ |-.
T Consensus 148 l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~--ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRi 225 (348)
T PRK09250 148 LTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFE--EAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHL 225 (348)
T ss_pred ceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHH--HHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHH
Confidence 4456777777733 3334444 35678899998 44555543 336
Q ss_pred Hhhh-cCccccC-CCCCcchhhhhhcccc---chHHHHH-HhhhhhhhHHHHHHHHHhcCCcE
Q 004907 161 VAEC-FDKIRVN-PGNFADRRAQFEQLEY---TDDEYQK-ELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 161 a~~~-vdkiRIN-PGNig~~~k~f~~~~Y---tdeey~~-ele~I~e~~~~vv~~ake~g~~I 217 (724)
|+|. +|=|-++ ||+... |+..-| .+.+|+. ..+...++|+.+|+.|=.-.+|+
T Consensus 226 aaELGADIVKv~yp~~~~~----f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~ag~vpV 284 (348)
T PRK09250 226 AATIGADIIKQKLPTNNGG----YKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCYMGRRGL 284 (348)
T ss_pred HHHHcCCEEEecCCCChhh----HHHhhcccccccccccccccchHHHHHHHHHhhccCCceE
Confidence 6665 7878877 565432 333211 1122222 23667778888999873222444
No 313
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=21.99 E-value=99 Score=33.14 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=58.4
Q ss_pred cceeecCCCCHHHHH----HHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 145 IPLVADIHFAPSVAL----RVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 145 iPLVADIHF~~~lAl----~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+=-|-|=++.++... .|.+++|-+-+-=|...--. ++.+++.++.|+++||.+=-|
T Consensus 14 lT~v~Dkglg~~~~~dlLe~ag~yID~~K~g~Gt~~l~~--------------------~~~l~eki~l~~~~gV~v~~G 73 (244)
T PF02679_consen 14 LTMVIDKGLGLRYLEDLLESAGDYIDFLKFGWGTSALYP--------------------EEILKEKIDLAHSHGVYVYPG 73 (244)
T ss_dssp -EEEEESS--HHHHHHHHHHHGGG-SEEEE-TTGGGGST--------------------CHHHHHHHHHHHCTT-EEEE-
T ss_pred cEEEecCCCCHHHHHHHHHHhhhhccEEEecCceeeecC--------------------HHHHHHHHHHHHHcCCeEeCC
Confidence 445666666655443 34445888877655543211 234788999999999998433
Q ss_pred eccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCC
Q 004907 221 TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 289 (724)
Q Consensus 221 vN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~d 289 (724)
|.|-.-...+ .+.-+|++.|.++||+-|-||-=+-+.. -+.-..+.++..++|+.
T Consensus 74 ---Gtl~E~a~~q---------~~~~~yl~~~k~lGf~~IEiSdGti~l~--~~~r~~~I~~~~~~Gf~ 128 (244)
T PF02679_consen 74 ---GTLFEVAYQQ---------GKFDEYLEECKELGFDAIEISDGTIDLP--EEERLRLIRKAKEEGFK 128 (244)
T ss_dssp ---HHHHHHHHHT---------T-HHHHHHHHHHCT-SEEEE--SSS-----HHHHHHHHHHHCCTTSE
T ss_pred ---cHHHHHHHhc---------ChHHHHHHHHHHcCCCEEEecCCceeCC--HHHHHHHHHHHHHCCCE
Confidence 4443322221 2345799999999999999997555433 23333444554444543
No 314
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=21.93 E-value=9.9e+02 Score=26.08 Aligned_cols=86 Identities=10% Similarity=0.123 Sum_probs=55.0
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCc-chhhHHHHHHHHHhhhcCCCeEEeeCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRD-DLVIGAGTNVGALLVDGLGDGLLLEAPG 599 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~e-d~~IkSa~~iG~LL~DGiGDtIrvsl~~ 599 (724)
.|++|.+. +.............++..+.+ ....||.+||. ++. --.|+-|+..| =+-|++..|.
T Consensus 38 sPvIi~~~--~~~~~~~~~~~~~~~~~~~a~-~~~VPV~lHLD-----H~~~~~~i~~ai~~G-------ftSVMiD~S~ 102 (276)
T cd00947 38 SPVILQIS--EGAIKYAGLELLVAMVKAAAE-RASVPVALHLD-----HGSSFELIKRAIRAG-------FSSVMIDGSH 102 (276)
T ss_pred CCEEEEcC--cchhhhCCHHHHHHHHHHHHH-HCCCCEEEECC-----CCCCHHHHHHHHHhC-------CCEEEeCCCC
Confidence 56666643 111122333444445555533 45899999994 222 24566666666 4788999999
Q ss_pred CChhhhhHHHHHHHHHhhccCC
Q 004907 600 QDFDFLRDTSFNLLQGCRMRNT 621 (724)
Q Consensus 600 ~~~~~i~~v~~~ILQa~r~R~~ 621 (724)
.|.++....++.+.+.++-+.-
T Consensus 103 l~~eeNi~~t~~vv~~ah~~gv 124 (276)
T cd00947 103 LPFEENVAKTKEVVELAHAYGV 124 (276)
T ss_pred CCHHHHHHHHHHHHHHHHHcCC
Confidence 9998888888888888877643
No 315
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=21.82 E-value=7e+02 Score=27.15 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCCCcEEEEEecC------C--hhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhHHHH
Q 004907 242 VESAFEFARICRKLDFHNFLFSMKAS------N--PVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGI 313 (724)
Q Consensus 242 VeSAle~~~i~e~~~F~diviS~KaS------n--v~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~~G~IKSaiGi 313 (724)
.+.++++++.|++.|.+-|-+|.-.. . .......++.+.+. ++-|+ .-.|.|.|.--.
T Consensus 240 ~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~-----~~iPV---------i~~G~i~t~~~a 305 (336)
T cd02932 240 LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE-----AGIPV---------IAVGLITDPEQA 305 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh-----CCCCE---------EEeCCCCCHHHH
Confidence 46788999999999988777763110 0 11134555566665 56776 235778888888
Q ss_pred HHHhhcCCCcee
Q 004907 314 GTLLQDGLGDTI 325 (724)
Q Consensus 314 G~LL~~GIGDTI 325 (724)
-.+|.+|--|-|
T Consensus 306 ~~~l~~g~aD~V 317 (336)
T cd02932 306 EAILESGRADLV 317 (336)
T ss_pred HHHHHcCCCCee
Confidence 888888876654
No 316
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=21.75 E-value=4.4e+02 Score=29.37 Aligned_cols=96 Identities=19% Similarity=0.239 Sum_probs=54.6
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCchHHHh--------hcCCCchHHHHHHHHHHHHHHH-CCCCcEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRK-LDFHNFLF 262 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il~--------~yg~t~~amVeSAle~~~i~e~-~~F~divi 262 (724)
.+|+++|.+.|..=.+.|++-|.- |=|=..||.|-..+|+ +||.+.|.=..=.+|-++-.++ .| .++ |
T Consensus 151 ~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg-~~~-i 228 (362)
T PRK10605 151 LEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWG-ADR-I 228 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcC-CCe-E
Confidence 345666666666666666666653 3445688999777776 3776666555555555554443 34 333 6
Q ss_pred EEecCChh--------HHHHH-HHHHHHHhhcCCCCc
Q 004907 263 SMKASNPV--------VMVQA-YRLLVAEMYVHGWDY 290 (724)
Q Consensus 263 S~KaSnv~--------~~v~A-yrlla~~m~~~g~dY 290 (724)
.+|-|-.. .+.+- ...+++.+++.|+||
T Consensus 229 gvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~ 265 (362)
T PRK10605 229 GIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAY 265 (362)
T ss_pred EEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 77765210 12222 445555555566665
No 317
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=21.74 E-value=5.4e+02 Score=27.70 Aligned_cols=71 Identities=15% Similarity=0.081 Sum_probs=47.1
Q ss_pred HHHHHHhcCCc-EEEeeccCCCchH-HHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEe-c-----CChhHHHHHHH
Q 004907 206 LVEKCKKYGRA-VRIGTNHGSLSDR-IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK-A-----SNPVVMVQAYR 277 (724)
Q Consensus 206 vv~~ake~g~~-IRIGvN~GSL~~~-il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K-a-----Snv~~~v~Ayr 277 (724)
=++.|++.|.. |+|.+ |.|+- +..+++.+++..++...+.++.+.++|++ +.+++= . +++..+++..+
T Consensus 79 ~~~~A~~~g~~~i~i~~---~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~-v~~~~~d~~~~~r~~~~~~~~~~~ 154 (280)
T cd07945 79 SVDWIKSAGAKVLNLLT---KGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIE-VNIYLEDWSNGMRDSPDYVFQLVD 154 (280)
T ss_pred HHHHHHHCCCCEEEEEE---eCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCE-EEEEEEeCCCCCcCCHHHHHHHHH
Confidence 36777777776 44444 45554 44556789999999999999999999974 666554 2 24554444444
Q ss_pred HHH
Q 004907 278 LLV 280 (724)
Q Consensus 278 lla 280 (724)
.+.
T Consensus 155 ~~~ 157 (280)
T cd07945 155 FLS 157 (280)
T ss_pred HHH
Confidence 443
No 318
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=21.62 E-value=3.7e+02 Score=31.36 Aligned_cols=63 Identities=10% Similarity=0.168 Sum_probs=40.2
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCcccc--CCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIRV--NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiRI--NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
++||+|=-=.++.-|..++++ +|.|++ =||-+...+.. ... +.-. -..+.++.+.|+++|+|+
T Consensus 282 ~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~-~~~---------g~p~-~~ai~~~~~~~~~~~v~v 347 (495)
T PTZ00314 282 HVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEV-CAV---------GRPQ-ASAVYHVARYARERGVPC 347 (495)
T ss_pred CceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchh-ccC---------CCCh-HHHHHHHHHHHhhcCCeE
Confidence 599999555678899999998 999995 58844321100 000 0000 113566888899999887
No 319
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=21.52 E-value=37 Score=35.45 Aligned_cols=60 Identities=23% Similarity=0.300 Sum_probs=31.0
Q ss_pred cceeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecC-CCceeEeee
Q 004907 622 KTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGG-APGKIDLYV 689 (724)
Q Consensus 622 kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg-~pGki~Ly~ 689 (724)
.+.-++||+||.|+. +..-. -.+-|...+-|..+=|--=| -+.+|.=+.+. -|-++.++.
T Consensus 11 ~~~~~~CPvCg~~l~-~~~~~----~~IPyFG~V~i~t~~C~~Cg---YR~~DV~~~e~~eP~r~~lkv 71 (201)
T COG1779 11 FETRIDCPVCGGTLK-AHMYL----YDIPYFGEVLISTGVCERCG---YRSTDVKTLEEREPRRYTLKV 71 (201)
T ss_pred eeeeecCCcccceee-EEEee----ecCCccceEEEEEEEccccC---CcccceeecccCCCeEEEEEe
Confidence 356789999999643 11100 01234446777776675333 23455555544 444444444
No 320
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=21.46 E-value=7.8e+02 Score=25.84 Aligned_cols=106 Identities=19% Similarity=0.209 Sum_probs=67.5
Q ss_pred cceeecCCCCHHHHHHHhh----h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 145 IPLVADIHFAPSVALRVAE----C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 145 iPLVADIHF~~~lAl~a~~----~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
.|.=+|--.|+.....=++ . ++.|=+| |..|... ..|++|+.+=++ .+++.++ ..+||=+
T Consensus 10 TPf~~dg~iD~~~~~~~i~~l~~~Gv~gl~v~-GstGE~~------~lt~~Er~~l~~-------~~~~~~~-~~~~vi~ 74 (284)
T cd00950 10 TPFKDDGSVDFDALERLIEFQIENGTDGLVVC-GTTGESP------TLSDEEHEAVIE-------AVVEAVN-GRVPVIA 74 (284)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEC-CCCcchh------hCCHHHHHHHHH-------HHHHHhC-CCCcEEe
Confidence 4555555555544333333 3 6666666 8887532 345665544332 2333333 4578888
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHHHH
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaSnv~~~v~Ayrlla~~ 282 (724)
||..-|. +-+++.++.+++.|++-+.+.. |.| ...+++-|+.+++.
T Consensus 75 gv~~~~~----------------~~~~~~a~~a~~~G~d~v~~~~P~~~~~~-~~~l~~~~~~ia~~ 124 (284)
T cd00950 75 GTGSNNT----------------AEAIELTKRAEKAGADAALVVTPYYNKPS-QEGLYAHFKAIAEA 124 (284)
T ss_pred ccCCccH----------------HHHHHHHHHHHHcCCCEEEEcccccCCCC-HHHHHHHHHHHHhc
Confidence 8865554 3568899999999999888863 444 47899999999997
No 321
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=21.33 E-value=2e+02 Score=30.92 Aligned_cols=76 Identities=25% Similarity=0.324 Sum_probs=51.0
Q ss_pred HHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 131 CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
++.+.++|.+.|+.+-|--| =++.-...|.+. +|.|=+.-|.|++. |. .+. .+|+++|. .-.+.
T Consensus 115 l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VELhTG~yA~a---~~-----~~~-~~el~~~~----~aa~~ 179 (239)
T PRK05265 115 LKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIELHTGPYADA---KT-----EAE-AAELERIA----KAAKL 179 (239)
T ss_pred HHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEechhhhcC---CC-----cch-HHHHHHHH----HHHHH
Confidence 44455566678998988887 445555566666 99999999999873 21 111 44555544 47788
Q ss_pred HHhcCCcEEEeeccCC
Q 004907 210 CKKYGRAVRIGTNHGS 225 (724)
Q Consensus 210 ake~g~~IRIGvN~GS 225 (724)
|++.|+ +||+|-
T Consensus 180 a~~lGL----~VnAGH 191 (239)
T PRK05265 180 AASLGL----GVNAGH 191 (239)
T ss_pred HHHcCC----EEecCC
Confidence 888874 778773
No 322
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=21.25 E-value=87 Score=25.42 Aligned_cols=22 Identities=23% Similarity=0.693 Sum_probs=18.1
Q ss_pred ecCCCCccccccHHHHHHHHHHH
Q 004907 626 VSCPSCGRTLFDLQEISAEIREK 648 (724)
Q Consensus 626 ISCPsCGRTlfDLq~~~~~Ik~~ 648 (724)
-.||=||+ .||..++..=+.+.
T Consensus 3 f~CP~C~~-~~~~~~L~~H~~~~ 24 (54)
T PF05605_consen 3 FTCPYCGK-GFSESSLVEHCEDE 24 (54)
T ss_pred cCCCCCCC-ccCHHHHHHHHHhH
Confidence 46999999 89999888777653
No 323
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.05 E-value=4.4e+02 Score=26.83 Aligned_cols=74 Identities=19% Similarity=0.145 Sum_probs=48.5
Q ss_pred HHHHHHHhcC-CcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE-ecCC----hhHHHHHHHH
Q 004907 205 PLVEKCKKYG-RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM-KASN----PVVMVQAYRL 278 (724)
Q Consensus 205 ~vv~~ake~g-~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~-KaSn----v~~~v~Ayrl 278 (724)
+.++.+++.| .-|||-. .+| +-....+++-+.+..++.+++.++.+.+.|++ +.+++ -++. +....+.++.
T Consensus 78 ~~i~~a~~~g~~~i~i~~-~~s-~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~-v~~~~~~~~~~~~~~~~l~~~~~~ 154 (265)
T cd03174 78 KGIERALEAGVDEVRIFD-SAS-ETHSRKNLNKSREEDLENAEEAIEAAKEAGLE-VEGSLEDAFGCKTDPEYVLEVAKA 154 (265)
T ss_pred hhHHHHHhCCcCEEEEEE-ecC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCe-EEEEEEeecCCCCCHHHHHHHHHH
Confidence 3577777887 4566655 333 34445556678889999999999999999985 55555 4443 4444444444
Q ss_pred HHH
Q 004907 279 LVA 281 (724)
Q Consensus 279 la~ 281 (724)
+.+
T Consensus 155 ~~~ 157 (265)
T cd03174 155 LEE 157 (265)
T ss_pred HHH
Confidence 443
No 324
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=21.02 E-value=2.1e+02 Score=30.85 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHh-cCC-cEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhH
Q 004907 199 IEEVFSPLVEKCKK-YGR-AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV 271 (724)
Q Consensus 199 I~e~~~~vv~~ake-~g~-~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~ 271 (724)
++..|.++++.+++ .|+ .+.|-+| |++-++ +++.+.+.|.+.|.||+.+.+...
T Consensus 72 l~~~l~~li~~i~~~~gi~~v~itTN-G~ll~~------------------~~~~L~~~gl~~v~ISld~~~~~~ 127 (334)
T TIGR02666 72 LRKDLVELVARLAALPGIEDIALTTN-GLLLAR------------------HAKDLKEAGLKRVNVSLDSLDPER 127 (334)
T ss_pred ccCCHHHHHHHHHhcCCCCeEEEEeC-chhHHH------------------HHHHHHHcCCCeEEEecccCCHHH
No 325
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=20.88 E-value=2.6e+02 Score=32.74 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=54.3
Q ss_pred CCcccceeEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchh
Q 004907 495 LPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLV 574 (724)
Q Consensus 495 ~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~ 574 (724)
+.++.++.-+..++++.++++.|+..++-+|++- ..-.--.-....+.++.|.+.+++.|||.- |-
T Consensus 94 lgAGA~V~~~~a~~l~~~~l~~I~~~~PDIILLa---GGtDGG~~e~~l~NA~~La~~~~~~pIIyA-----------GN 159 (463)
T TIGR01319 94 HGAGAKIANVYAYDLNNKDIEAIEESNLDIILFA---GGTDGGEEECGIHNAKMLAEHGLDCAIIVA-----------GN 159 (463)
T ss_pred hcCCcEEEEEEeecCCHHHHHHHhhcCCCEEEEe---CCcCCCchHHHHHHHHHHHhcCCCCcEEEe-----------CC
Confidence 4466788888999999999999999988777764 221122233446677888899999998651 33
Q ss_pred hHHHHHHHHHhhh
Q 004907 575 IGAGTNVGALLVD 587 (724)
Q Consensus 575 IkSa~~iG~LL~D 587 (724)
..++-.+-..|.+
T Consensus 160 ~~a~~~V~~il~~ 172 (463)
T TIGR01319 160 KDIQDEVQEIFDH 172 (463)
T ss_pred HHHHHHHHHHHhc
Confidence 4445556666664
No 326
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=20.74 E-value=9.2e+02 Score=26.85 Aligned_cols=90 Identities=11% Similarity=0.136 Sum_probs=57.5
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 600 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 600 (724)
.|++|.+. ...-..........++..+.+.--..||.+||.=-. +--.++.|+..| + +.|++..|..
T Consensus 42 sPvIlq~s--~~~~~~~g~~~~~~~~~~~a~~~~~VPValHLDHg~----~~e~i~~ai~~G------f-tSVM~DgS~l 108 (307)
T PRK05835 42 SPLFIQAS--EGAIKYMGIDMAVGMVKIMCERYPHIPVALHLDHGT----TFESCEKAVKAG------F-TSVMIDASHH 108 (307)
T ss_pred CCEEEEcC--ccHHhhCChHHHHHHHHHHHHhcCCCeEEEECCCCC----CHHHHHHHHHcC------C-CEEEEeCCCC
Confidence 45666543 112222344445556666655444589999994111 224577787776 3 7899999999
Q ss_pred ChhhhhHHHHHHHHHhhccCCcc
Q 004907 601 DFDFLRDTSFNLLQGCRMRNTKT 623 (724)
Q Consensus 601 ~~~~i~~v~~~ILQa~r~R~~kt 623 (724)
|.++.....+.+.+.+.-+.-.+
T Consensus 109 ~~eeNi~~T~~vve~Ah~~gv~V 131 (307)
T PRK05835 109 AFEENLELTSKVVKMAHNAGVSV 131 (307)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEE
Confidence 98888888888888777665444
No 327
>cd00330 phosphagen_kinases Phosphagen (guanidino) kinases. Phosphagen (guanidino) kinases are enzymes that transphosphorylate a high energy phosphoguanidino compound, like phosphocreatine (PCr) in the case of creatine kinase (CK) or phosphoarginine in the case of arginine kinase, which is used as an energy-storage and -transport metabolite, to ADP, thereby creating ATP. The substrate binding site is located in the cleft between the N and C-terminal domains, but most of the catalytic residues are found in the larger C-terminal domain. In higher eukaryotes, CK exists in tissue-specific (muscle, brain), as well as compartment-specific (mitochondrial and cytosolic) isoforms. They are either coupled to glycolysis (cytosolic form) or oxidative phosphorylation (mitochondrial form). Besides CK and AK, the most studied members of this family are also other phosphagen kinases with different substrate specificities, like glycocyamine kinase (GK), lombricine kinase (LK), taurocyamine kinase (TK) a
Probab=20.72 E-value=1.3e+02 Score=31.93 Aligned_cols=122 Identities=15% Similarity=0.171 Sum_probs=68.8
Q ss_pred eecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCC
Q 004907 96 VAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNF 175 (724)
Q Consensus 96 V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNi 175 (724)
|.|...--++||||... .|++++-+.+.++.+.++ +. ++.-=|=||-|=- =.|-|+
T Consensus 101 i~vNEEDHLrI~s~~~G--~~l~~~~~r~~~~~~~le---~~-------l~fAfd~~lGyLT------------scPtNl 156 (236)
T cd00330 101 VWVNEEDHLRIISMQKG--GQLKEVMKRANTVDDWIE---EK-------VDFAFNEQRGYLT------------SCPTNL 156 (236)
T ss_pred EEECCCCeEEEEEEcCC--CCHHHHHHHHHHHHHHHH---hh-------cCccccCCeEEEe------------eCCCCC
Confidence 56778999999999986 788888888777555443 32 3333333333322 289999
Q ss_pred cchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE--eeccCCCch--HH--HhhcCCCchHHHHHHHHHH
Q 004907 176 ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI--GTNHGSLSD--RI--MSYYGDSPRGMVESAFEFA 249 (724)
Q Consensus 176 g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI--GvN~GSL~~--~i--l~~yg~t~~amVeSAle~~ 249 (724)
|.+-+- .... .|=.+-.....+.+.|+++|..+|= |-++.++.. +| ..+.|-|-+.++++-.+-+
T Consensus 157 GTGlRa-SV~l--------hLP~L~~~~~~~~~~~~~lgl~vRG~~Ge~s~~~g~i~~ISN~~tLG~tE~eii~~l~~~v 227 (236)
T cd00330 157 GTGLRA-SVHI--------HLPALVKTINRIIPAINQLGLQVRGTYGEGTEAVGGVFDISNQIRLGKSEQDIVEDLNDGA 227 (236)
T ss_pred CcceEE-EEEE--------ECcchhhcHHHHHHHHHHcCceEeecCCCCCcccCCEEEEEcccccccCHHHHHHHHHHHH
Confidence 985431 1100 0111111245688999999999992 222222110 01 1234555566666555544
Q ss_pred H
Q 004907 250 R 250 (724)
Q Consensus 250 ~ 250 (724)
+
T Consensus 228 ~ 228 (236)
T cd00330 228 A 228 (236)
T ss_pred H
Confidence 4
No 328
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=20.70 E-value=5.1e+02 Score=28.83 Aligned_cols=108 Identities=22% Similarity=0.255 Sum_probs=68.6
Q ss_pred CCCCCHHHHHHHHHHHHH----------------------HHHHHHHHhhhcCCCccee--ecCCC-CHHHHHHHhhh-c
Q 004907 112 NDTKDVAGTVEEVMRIAD----------------------ACFEIKNSLVQKNYNIPLV--ADIHF-APSVALRVAEC-F 165 (724)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~----------------------a~~~I~~~L~~~~~~iPLV--ADIHF-~~~lAl~a~~~-v 165 (724)
.-|-|+-.+|..++.+.. .++.|++ +++..++|+| |--+. +|.-|-.+++. +
T Consensus 151 ~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~e--i~~~~~iPVV~~AeGGI~TPedaa~vme~GA 228 (293)
T PRK04180 151 AGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKE--VAELGRLPVVNFAAGGIATPADAALMMQLGA 228 (293)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHH--HHHhCCCCEEEEEeCCCCCHHHHHHHHHhCC
Confidence 348899998887777665 1122333 2334579998 77777 78888788886 8
Q ss_pred CccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCch
Q 004907 166 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 228 (724)
Q Consensus 166 dkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~ 228 (724)
+.|=+--+=+...+ ....-.+|.+.+.+-.+ -..+.+..+..|-+| .|.|-.+|++
T Consensus 229 dgVaVGSaI~ks~d-----P~~~akafv~ai~~~~~-~~~~~~~s~~~~~~m-~g~~~~~~~~ 284 (293)
T PRK04180 229 DGVFVGSGIFKSGD-----PEKRARAIVEATTHYDD-PEVLAEVSKGLGEAM-VGIDIDELPP 284 (293)
T ss_pred CEEEEcHHhhcCCC-----HHHHHHHHHHHHHHcCC-HHHHHHHHccccccc-CCCccccCCH
Confidence 77765433332111 01112345555555554 567888899999988 4899888854
No 329
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=20.69 E-value=1.6e+02 Score=32.50 Aligned_cols=57 Identities=16% Similarity=0.192 Sum_probs=44.7
Q ss_pred CCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCC--CcEEEEEecCChhHHHHHHHHHHHH
Q 004907 224 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 224 GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F--~diviS~KaSnv~~~v~Ayrlla~~ 282 (724)
|-+|-.+-.+++.+.++||+.|.+..+++++.|. .+|.| |---+..=++|-+.|.++
T Consensus 89 G~Vs~EVdp~la~d~~~~i~~A~~l~~~~~~~gi~~~~i~I--KIPaT~eGi~A~~~L~~~ 147 (313)
T cd00957 89 GRVSTEVDARLSFDTNATIAKARKLIKLYEEAGIDKERILI--KIAATWEGIQAAKQLEKE 147 (313)
T ss_pred CCEEEEEecccccCHHHHHHHHHHHHHHhHhcCCCCCcEEE--EeCCCHHHHHHHHHHHHC
Confidence 6676666667788889999999999999999998 56665 555556678888887754
No 330
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=20.54 E-value=51 Score=39.81 Aligned_cols=43 Identities=21% Similarity=0.317 Sum_probs=26.1
Q ss_pred cCCCeEEeeCCCCChhhhhHHHHHHHHHhhccCCcceeecCCCCcccc
Q 004907 588 GLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTL 635 (724)
Q Consensus 588 GiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~kte~ISCPsCGRTl 635 (724)
++||+|.|+-+++-...+..+ +...|-+... -.-.||+||-.+
T Consensus 366 ~iGD~V~V~raGdVIP~I~~v----~~~~r~~~~~-~P~~CP~C~s~l 408 (669)
T PRK14350 366 NVGDVVKISRRGDVIPAVELV----IEKLSVGFFK-IPDNCPSCKTAL 408 (669)
T ss_pred CCCCEEEEEecCCCCCceeee----cccccCCCCC-CCCCCCCCCCEe
Confidence 679999999988655444322 2222222222 234799999865
No 331
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=20.47 E-value=1.6e+02 Score=23.55 Aligned_cols=71 Identities=18% Similarity=0.381 Sum_probs=37.5
Q ss_pred CCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHHHHHH
Q 004907 628 CPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDAL 707 (724)
Q Consensus 628 CPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipeeeavd~L 707 (724)
||.|- .+.+..+++.+. .++++++.+-|--|. + .-..||+.+ .|- +.+|.+++.+.. ++...-.+.|
T Consensus 22 C~~C~----~~~~~~~~~~~~---~~~~~~~~i~~~~~~--~-~~~~~~v~~-~P~-~~~~~~g~~~~~-~~g~~~~~~l 88 (93)
T cd02947 22 CGPCK----AIAPVLEELAEE---YPKVKFVKVDVDENP--E-LAEEYGVRS-IPT-FLFFKNGKEVDR-VVGADPKEEL 88 (93)
T ss_pred ChhHH----HhhHHHHHHHHH---CCCceEEEEECCCCh--h-HHHhcCccc-ccE-EEEEECCEEEEE-EecCCCHHHH
Confidence 66663 333444444433 457888887765421 1 123577776 474 457777765553 3333333555
Q ss_pred HHHH
Q 004907 708 IQLI 711 (724)
Q Consensus 708 i~lI 711 (724)
.++|
T Consensus 89 ~~~i 92 (93)
T cd02947 89 EEFL 92 (93)
T ss_pred HHHh
Confidence 5444
No 332
>cd05402 NT_PAP_TUTase Nucleotidyltransferase (NT) domain of poly(A) polymerases and terminal uridylyl transferases. Poly(A) polymerases (PAPs) catalyze mRNA poly(A) tail synthesis, and terminal uridylyl transferases (TUTases) uridylate RNA. PAPs in this subgroup include human PAP alpha, mouse testis-specific cytoplasmic PAP beta, human nuclear PAP gamma, Saccharomyces cerevisiae PAP1, TRF4 and-5, Schizosaccharomyces pombe caffeine-induced death proteins -1, and -14, Caenorhabditis elegans Germ Line Development-2, and Chlamydomonas reinhardtii MUT68. This family also includes human U6 snRNA-specific TUTase1, and Trypanosoma brucei 3'-TUTase-1,-2, and 4. This family belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, coordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. For the majority of proteins in this family, these carboxyla
Probab=20.45 E-value=4.3e+02 Score=23.72 Aligned_cols=67 Identities=25% Similarity=0.416 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcC-CCCcEEEEeeeeecCCC-CCCCCceeeecCCCceeEeeecceeeeecCChhHHHHHHHHHHHhccc
Q 004907 639 QEISAEIREKTSH-LPGVSIAIMGCIVNGPG-EMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGR 716 (724)
Q Consensus 639 q~~~~~Ik~~t~h-LkgvkIAVMGCIVNGPG-EmadAD~GyvGg~pGki~Ly~gke~V~~~Ipeeeavd~Li~lIk~~g~ 716 (724)
+++.+++++.+.. .|..++-+-|=.++|=+ ...|-|+.+.+..+ .....+....|-+.+++.+.
T Consensus 3 ~~i~~~l~~~i~~~~~~~~v~~fGS~~~g~~~~~SDiDl~i~~~~~--------------~~~~~~~l~~l~~~l~~~~~ 68 (114)
T cd05402 3 EEVLDRLQELIKEWFPGAKLYPFGSYVTGLGLPGSDIDLCLLGPNH--------------RVDREDFLRKLAKLLKKSGE 68 (114)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecccccCCCCCCCCeeEEEEeCCC--------------CccHHHHHHHHHHHHHhCCC
Confidence 4567777777755 57899999999999988 66788888876422 25777889999999999887
Q ss_pred cCC
Q 004907 717 WAE 719 (724)
Q Consensus 717 W~d 719 (724)
|.+
T Consensus 69 ~~~ 71 (114)
T cd05402 69 VVE 71 (114)
T ss_pred cee
Confidence 654
No 333
>PF10825 DUF2752: Protein of unknown function (DUF2752); InterPro: IPR021215 This family is conserved in bacteria. Many members are annotated as being putative membrane proteins.
Probab=20.31 E-value=36 Score=28.04 Aligned_cols=9 Identities=56% Similarity=1.549 Sum_probs=7.7
Q ss_pred ecCCCCccc
Q 004907 626 VSCPSCGRT 634 (724)
Q Consensus 626 ISCPsCGRT 634 (724)
+.||+||=|
T Consensus 10 ~~CPgCG~t 18 (52)
T PF10825_consen 10 IPCPGCGMT 18 (52)
T ss_pred CCCCCCcHH
Confidence 679999976
No 334
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=20.28 E-value=1.5e+02 Score=31.48 Aligned_cols=58 Identities=21% Similarity=0.340 Sum_probs=42.6
Q ss_pred EeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHH
Q 004907 219 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 219 IGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~ 282 (724)
|| ..|-++=.+..++.++.++|++.|.+..+++.+ +|++|-+ --...-++|-+.|.++
T Consensus 81 ~~-~~G~Vs~ev~~~~~~d~~~mi~~A~~l~~~~~~---~nv~IKI--PaT~~Gl~A~~~L~~~ 138 (252)
T cd00439 81 TE-ADGRVSVEVSARLADDTQGMVEAAKYLSKVVNR---RNIYIKI--PATAEGIPAIKDLIAA 138 (252)
T ss_pred hC-CCCeEEEEEeccccCCHHHHHHHHHHHHHhcCc---ccEEEEe--CCCHHHHHHHHHHHHC
Confidence 45 566666666667778899999999998888655 5777744 4445778888888766
No 335
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=20.25 E-value=50 Score=28.56 Aligned_cols=32 Identities=19% Similarity=0.479 Sum_probs=22.3
Q ss_pred cceeecCCCCccccccHHHHHHHHHHHhcCCC
Q 004907 622 KTEYVSCPSCGRTLFDLQEISAEIREKTSHLP 653 (724)
Q Consensus 622 kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLk 653 (724)
+-+|.-||.||-..=+-.+.++-+.+.-.++.
T Consensus 14 GE~~lrCPRC~~~FR~~K~Y~RHVNKaH~~~~ 45 (65)
T COG4049 14 GEEFLRCPRCGMVFRRRKDYIRHVNKAHGWLF 45 (65)
T ss_pred CceeeeCCchhHHHHHhHHHHHHhhHHhhhhh
Confidence 55899999999864444556666666666554
No 336
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=20.13 E-value=1.2e+02 Score=33.15 Aligned_cols=92 Identities=22% Similarity=0.350 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHH------------------HHHHHHHHhhhcCCCcc-eeecCCCCHHHHHHHhhhcCccccCCCC
Q 004907 114 TKDVAGTVEEVMRIAD------------------ACFEIKNSLVQKNYNIP-LVADIHFAPSVALRVAECFDKIRVNPGN 174 (724)
Q Consensus 114 T~Dv~atv~Qi~~L~~------------------a~~~I~~~L~~~~~~iP-LVADIHF~~~lAl~a~~~vdkiRINPGN 174 (724)
....|.|+.||..|++ |++.||++ +-+|= +.|+.|-|+.+--++++. =+||-+
T Consensus 44 ~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~af~kIkek----RpDIl~ia~~~~EDp~~i~~~aDi----~~~~D~ 115 (275)
T PF12683_consen 44 MSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEAFRKIKEK----RPDILLIAGEPHEDPEVISSAADI----VVNPDE 115 (275)
T ss_dssp GGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHHHHHHHHH-----TTSEEEESS--S-HHHHHHHSSE----EEE--H
T ss_pred cchHHHHHHHHHHhccCCCccEEEEeCCCcchHHHHHHHHhc----CCCeEEEcCCCcCCHHHHhhccCe----Eeccch
Confidence 4668999999999999 77788773 55544 557889999887666664 356666
Q ss_pred Ccc-----------hhhhhhccccch-HHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 175 FAD-----------RRAQFEQLEYTD-DEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 175 ig~-----------~~k~f~~~~Ytd-eey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.. +.++|-+..+.. =.|. .+..+...+-+.|++.|+.-
T Consensus 116 ~~~G~~i~~~Ak~mGAktFVh~sfprhms~~----~l~~Rr~~M~~~C~~lGi~f 166 (275)
T PF12683_consen 116 ISRGYTIVWAAKKMGAKTFVHYSFPRHMSYE----LLARRRDIMEEACKDLGIKF 166 (275)
T ss_dssp HHHHHHHHHHHHHTT-S-EEEEEETTGGGSH----HHHHHHHHHHHHHHHCT--E
T ss_pred hhccHHHHHHHHHcCCceEEEEechhhcchH----HHHHHHHHHHHHHHHcCCeE
Confidence 533 124566655442 2233 33344455789999999886
No 337
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=20.10 E-value=2.4e+02 Score=28.73 Aligned_cols=83 Identities=18% Similarity=0.250 Sum_probs=53.5
Q ss_pred hhhHHHHHHHHHhcCCcEEEeecc-----------------------CCCchHH-HhhcCC---CchHHHHHHHHHHHHH
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNH-----------------------GSLSDRI-MSYYGD---SPRGMVESAFEFARIC 252 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~-----------------------GSL~~~i-l~~yg~---t~~amVeSAle~~~i~ 252 (724)
+..|..-.+.||+.|+++ |+=| |.|+.-| ++.+|. +++.|...+.+|++.+
T Consensus 45 D~~f~~n~~~A~~~Gl~v--GaYHf~~~~~~~~~QA~~F~~~v~~~~~~lp~vlD~E~~~~~~~~~~~~~~~~~~fl~~v 122 (190)
T cd06419 45 DDNFLSNFSRAQGTGLSV--GVIHTFSFSSTAAAQYRYFIRKVGNNTGNLPIAIYVSYYGDYNPDTKKSTQKLGLLVQLL 122 (190)
T ss_pred ChhHHHHHHHHHHCCCCE--EEEEEeecCCCHHHHHHHHHHhCCCCCCCCCeEEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 345666777888888776 7655 3332211 133342 4678889999999999
Q ss_pred HHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccccc
Q 004907 253 RKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLG 295 (724)
Q Consensus 253 e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLG 295 (724)
|+++-...+|.+ +.. ..+.|.. . -.+|||-|-
T Consensus 123 e~~~g~~piIYt---~~~-~~~~~~~---~----~~~y~LWiA 154 (190)
T cd06419 123 EQHYNQSVIIRG---TPA-VLKQVVK---A----LKQLKYWLI 154 (190)
T ss_pred HHHHCCCeEEEe---CHH-HHHHHHh---h----ccCCCeEEe
Confidence 999888888887 322 3333433 2 158999874
No 338
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=20.07 E-value=2.4e+02 Score=30.62 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCCcEEEee---ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCCh------hHH
Q 004907 202 VFSPLVEKCKKYGRAVRIGT---NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP------VVM 272 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGv---N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv------~~~ 272 (724)
.+..-|..+|+.|..+.|-+ +.+.++. --.+.+.++.+..+ +++..||+-|-|-.-.... ...
T Consensus 55 ~~~~~i~~lk~~G~kViiS~GG~~g~~~~~-----~~~~~~~~~~a~~~---~i~~y~~dgiDfDiE~~~~~d~~~~~~~ 126 (294)
T cd06543 55 WIKSDIAALRAAGGDVIVSFGGASGTPLAT-----SCTSADQLAAAYQK---VIDAYGLTHLDFDIEGGALTDTAAIDRR 126 (294)
T ss_pred hHHHHHHHHHHcCCeEEEEecCCCCCcccc-----CcccHHHHHHHHHH---HHHHhCCCeEEEeccCCccccchhHHHH
Confidence 45667889999998887744 3322222 12456788888755 5688999988886655433 345
Q ss_pred HHHHHHHHHH
Q 004907 273 VQAYRLLVAE 282 (724)
Q Consensus 273 v~Ayrlla~~ 282 (724)
++|-+.|-++
T Consensus 127 ~~al~~Lq~~ 136 (294)
T cd06543 127 AQALALLQKE 136 (294)
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 339
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=20.05 E-value=1.4e+02 Score=31.46 Aligned_cols=37 Identities=22% Similarity=0.445 Sum_probs=28.7
Q ss_pred eeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHH
Q 004907 89 RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVM 125 (724)
Q Consensus 89 r~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~ 125 (724)
..+.|+++.||++.|..+=|.+-++..++.+.++++.
T Consensus 7 ~~~~v~~~~~g~~~p~Icvpi~~~~~ee~~~~~~~~~ 43 (229)
T PRK01261 7 DKISIGKFVIGNMQPIVVESIFFKDIKEMKERFKTKV 43 (229)
T ss_pred CeEEEeCeEeCCCCcEEEEEeCCCCHHHHHHHHHHhh
Confidence 3578999999999999999998877666655444443
Done!