Query 004907
Match_columns 724
No_of_seqs 238 out of 964
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 09:25:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3noy_A 4-hydroxy-3-methylbut-2 100.0 1E-127 5E-132 1012.6 28.2 331 81-714 9-359 (366)
2 4g9p_A 4-hydroxy-3-methylbut-2 100.0 1E-125 4E-130 1009.7 27.6 340 82-714 2-397 (406)
3 4g9p_A 4-hydroxy-3-methylbut-2 99.6 6E-16 2E-20 166.4 7.6 73 521-603 197-269 (406)
4 3noy_A 4-hydroxy-3-methylbut-2 99.5 4.2E-15 1.4E-19 158.0 7.3 75 521-605 178-252 (366)
5 1zco_A 2-dehydro-3-deoxyphosph 98.8 1.9E-08 6.6E-13 102.9 12.9 164 87-304 9-207 (262)
6 4g38_A SIR-HP, sirhp, sulfite 98.5 1.5E-07 5E-12 105.6 7.4 123 589-713 386-537 (570)
7 1aop_A Sirhp, sulfite reductas 98.2 1.3E-06 4.3E-11 96.0 6.5 124 587-712 311-463 (497)
8 1zj8_A Probable ferredoxin-dep 98.0 7.9E-06 2.7E-10 91.4 7.5 103 609-712 405-541 (566)
9 3nvt_A 3-deoxy-D-arabino-heptu 97.4 0.00085 2.9E-08 72.4 12.7 130 89-264 129-284 (385)
10 2akj_A Ferredoxin--nitrite red 96.9 0.0016 5.4E-08 73.9 8.1 89 623-712 482-594 (608)
11 3b0g_A NII3, nitrite reductase 96.7 0.0026 8.9E-08 71.8 7.7 92 624-716 465-581 (591)
12 4djd_C C/Fe-SP, corrinoid/iron 96.2 0.099 3.4E-06 57.7 16.3 139 140-328 151-294 (446)
13 2h9a_A Carbon monoxide dehydro 95.9 0.35 1.2E-05 53.2 19.0 135 142-327 153-292 (445)
14 1tx2_A DHPS, dihydropteroate s 95.1 0.77 2.6E-05 48.0 17.4 150 142-327 113-275 (297)
15 3k13_A 5-methyltetrahydrofolat 94.8 0.51 1.8E-05 49.4 15.0 175 95-305 3-227 (300)
16 1aop_A Sirhp, sulfite reductas 93.7 0.15 5E-06 56.1 8.6 93 624-718 81-227 (497)
17 1zj8_A Probable ferredoxin-dep 93.4 0.22 7.5E-06 55.8 9.6 89 624-715 178-292 (566)
18 2yci_X 5-methyltetrahydrofolat 93.2 1.5 5.1E-05 45.1 14.7 189 95-322 2-233 (271)
19 1eye_A DHPS 1, dihydropteroate 93.2 3.9 0.00014 42.3 17.8 149 144-327 80-254 (280)
20 4h3d_A 3-dehydroquinate dehydr 92.8 5.4 0.00019 40.5 17.8 188 88-320 5-230 (258)
21 3b0g_A NII3, nitrite reductase 92.5 0.18 6.2E-06 57.0 7.2 92 624-716 209-330 (591)
22 2akj_A Ferredoxin--nitrite red 92.3 0.29 1E-05 55.6 8.7 92 624-716 226-347 (608)
23 2vp8_A Dihydropteroate synthas 91.9 3.6 0.00012 43.5 15.8 179 115-328 62-289 (318)
24 4g38_A SIR-HP, sirhp, sulfite 91.8 0.37 1.3E-05 54.3 8.6 93 624-718 154-300 (570)
25 1q7z_A 5-methyltetrahydrofolat 91.7 2.5 8.5E-05 47.6 15.2 173 115-328 337-538 (566)
26 1f6y_A 5-methyltetrahydrofolat 90.4 5.5 0.00019 40.6 14.9 146 142-327 67-228 (262)
27 2h9a_B CO dehydrogenase/acetyl 90.2 4.1 0.00014 42.9 14.0 114 142-297 120-247 (310)
28 3or1_A Sulfite reductase alpha 89.8 0.47 1.6E-05 52.2 6.9 56 624-680 173-239 (437)
29 3mm5_A Sulfite reductase, diss 89.3 0.6 2.1E-05 51.0 7.3 56 624-680 172-238 (418)
30 3dx5_A Uncharacterized protein 89.3 3.1 0.00011 40.5 11.7 134 104-264 3-171 (286)
31 3o1n_A 3-dehydroquinate dehydr 88.7 3.6 0.00012 42.4 12.2 194 72-310 15-238 (276)
32 1aj0_A DHPS, dihydropteroate s 88.6 5.3 0.00018 41.4 13.3 170 121-328 72-257 (282)
33 2yr1_A 3-dehydroquinate dehydr 87.8 25 0.00086 35.6 18.3 92 202-311 127-218 (257)
34 3mm5_B Sulfite reductase, diss 87.6 2.8 9.5E-05 44.5 10.8 56 624-680 130-195 (366)
35 3fs2_A 2-dehydro-3-deoxyphosph 86.8 8.5 0.00029 40.5 13.7 128 89-262 27-188 (298)
36 2y5s_A DHPS, dihydropteroate s 86.4 15 0.00051 38.3 15.3 153 144-328 97-272 (294)
37 3kws_A Putative sugar isomeras 86.2 4.9 0.00017 39.3 11.0 63 199-265 102-165 (287)
38 3tr9_A Dihydropteroate synthas 85.9 7.8 0.00027 41.0 13.0 166 121-327 87-273 (314)
39 3cqj_A L-ribulose-5-phosphate 84.9 5 0.00017 39.4 10.4 137 101-264 16-195 (295)
40 1y0e_A Putative N-acetylmannos 84.7 13 0.00046 35.4 13.1 165 101-325 6-201 (223)
41 2dqw_A Dihydropteroate synthas 84.5 22 0.00074 37.2 15.4 149 144-328 103-270 (294)
42 2pgw_A Muconate cycloisomerase 84.3 2.5 8.7E-05 44.4 8.5 93 98-221 188-299 (384)
43 3qc0_A Sugar isomerase; TIM ba 84.2 3.4 0.00012 39.7 8.7 144 101-264 4-176 (275)
44 2qgy_A Enolase from the enviro 83.7 4.1 0.00014 43.1 9.8 95 98-222 191-304 (391)
45 1k77_A EC1530, hypothetical pr 83.6 4.8 0.00017 38.5 9.4 78 165-264 99-177 (260)
46 1chr_A Chloromuconate cycloiso 83.5 4.3 0.00015 42.6 9.7 96 98-223 185-299 (370)
47 3i4k_A Muconate lactonizing en 83.5 4 0.00014 43.1 9.6 96 98-223 191-305 (383)
48 2fym_A Enolase; RNA degradosom 83.3 4.5 0.00015 43.6 10.1 84 116-224 268-372 (431)
49 3q45_A Mandelate racemase/muco 82.5 4.6 0.00016 42.5 9.5 95 98-222 181-294 (368)
50 1vs1_A 3-deoxy-7-phosphoheptul 82.0 14 0.00047 38.2 12.6 101 87-218 23-149 (276)
51 2ovl_A Putative racemase; stru 81.6 6.8 0.00023 41.0 10.4 93 98-220 188-299 (371)
52 3mqt_A Mandelate racemase/muco 81.6 2.6 8.9E-05 44.8 7.3 95 98-221 197-310 (394)
53 4e4u_A Mandalate racemase/muco 81.3 4 0.00014 43.9 8.6 93 98-220 198-309 (412)
54 1mdl_A Mandelate racemase; iso 81.2 3.3 0.00011 43.0 7.8 93 98-220 186-297 (359)
55 1rvk_A Isomerase/lactonizing e 81.0 3.4 0.00012 43.3 7.9 93 98-220 197-309 (382)
56 3mkc_A Racemase; metabolic pro 80.9 3 0.0001 44.4 7.5 95 98-221 202-315 (394)
57 1z41_A YQJM, probable NADH-dep 80.3 58 0.002 33.7 16.9 144 156-326 148-305 (338)
58 3bjs_A Mandelate racemase/muco 79.8 6.5 0.00022 42.3 9.7 96 98-220 226-338 (428)
59 2poz_A Putative dehydratase; o 79.0 4.5 0.00015 42.7 8.0 93 98-220 196-307 (392)
60 2gl5_A Putative dehydratase pr 78.8 4.9 0.00017 42.6 8.2 93 98-220 215-326 (410)
61 3p3b_A Mandelate racemase/muco 78.4 5.3 0.00018 42.3 8.4 97 98-220 198-311 (392)
62 3ozy_A Putative mandelate race 78.1 5.1 0.00017 42.5 8.2 96 98-220 192-304 (389)
63 3sjn_A Mandelate racemase/muco 77.9 4.4 0.00015 42.7 7.6 96 98-222 190-304 (374)
64 2nql_A AGR_PAT_674P, isomerase 77.5 3.7 0.00013 43.3 6.9 95 98-220 205-315 (388)
65 1ps9_A 2,4-dienoyl-COA reducta 77.5 28 0.00096 39.0 14.3 106 184-295 128-248 (671)
66 1vr6_A Phospho-2-dehydro-3-deo 77.4 15 0.00052 39.3 11.5 128 88-262 92-246 (350)
67 3rr1_A GALD, putative D-galact 77.2 3.9 0.00013 43.9 7.0 60 140-221 225-287 (405)
68 2hzg_A Mandelate racemase/muco 77.1 4.9 0.00017 42.6 7.7 97 98-220 190-304 (401)
69 4dwd_A Mandelate racemase/muco 76.8 9.4 0.00032 40.7 9.8 95 98-222 188-300 (393)
70 3qtp_A Enolase 1; glycolysis, 76.8 9.3 0.00032 42.2 9.9 86 116-227 280-386 (441)
71 4e5t_A Mandelate racemase / mu 76.6 3.9 0.00013 43.7 6.8 64 130-220 250-316 (404)
72 4hpn_A Putative uncharacterize 76.5 5.1 0.00017 41.9 7.5 97 98-225 185-300 (378)
73 2qde_A Mandelate racemase/muco 76.2 6.2 0.00021 41.7 8.1 96 98-223 186-300 (397)
74 1sjd_A N-acylamino acid racema 75.7 7.9 0.00027 40.3 8.7 62 140-223 229-293 (368)
75 4hb7_A Dihydropteroate synthas 75.3 21 0.00073 37.0 11.6 114 143-297 80-204 (270)
76 3tqp_A Enolase; energy metabol 75.2 6.5 0.00022 42.9 8.2 89 115-228 263-372 (428)
77 2ftp_A Hydroxymethylglutaryl-C 75.2 37 0.0013 34.8 13.3 122 142-282 74-200 (302)
78 3or1_B Sulfite reductase beta; 74.9 3 0.0001 44.8 5.3 57 623-680 140-206 (386)
79 3v3w_A Starvation sensing prot 74.8 9.8 0.00034 41.0 9.4 94 98-221 223-335 (424)
80 3uj2_A Enolase 1; enzyme funct 74.2 7 0.00024 43.0 8.1 74 130-228 321-398 (449)
81 1nu5_A Chloromuconate cycloiso 74.0 6.1 0.00021 41.2 7.3 94 98-221 185-297 (370)
82 3mwc_A Mandelate racemase/muco 73.7 6.5 0.00022 42.0 7.6 93 98-221 202-313 (400)
83 2rdx_A Mandelate racemase/muco 73.7 8.5 0.00029 40.4 8.4 97 98-221 186-295 (379)
84 2o56_A Putative mandelate race 73.7 4.5 0.00016 42.8 6.3 64 130-220 257-323 (407)
85 2p8b_A Mandelate racemase/muco 73.5 4.9 0.00017 41.8 6.5 94 98-221 182-295 (369)
86 1w6t_A Enolase; bacterial infe 73.5 8.4 0.00029 41.8 8.5 84 115-223 279-383 (444)
87 2og9_A Mandelate racemase/muco 73.5 7.3 0.00025 41.2 7.8 91 98-218 204-313 (393)
88 4djd_D C/Fe-SP, corrinoid/iron 73.3 15 0.00052 38.9 10.1 113 142-296 127-253 (323)
89 4dxk_A Mandelate racemase / mu 73.0 5.3 0.00018 42.6 6.7 65 130-221 252-319 (400)
90 3vcn_A Mannonate dehydratase; 73.0 8 0.00027 41.7 8.1 93 98-220 224-335 (425)
91 3vav_A 3-methyl-2-oxobutanoate 73.0 25 0.00084 36.6 11.4 87 203-307 131-224 (275)
92 1tzz_A Hypothetical protein L1 72.7 12 0.00042 39.4 9.3 96 98-220 207-325 (392)
93 2ox4_A Putative mandelate race 72.5 4.5 0.00015 42.7 5.9 93 98-220 206-317 (403)
94 3i6e_A Muconate cycloisomerase 72.0 5.2 0.00018 42.4 6.3 60 140-221 239-301 (385)
95 3fcp_A L-Ala-D/L-Glu epimerase 72.0 7.2 0.00024 41.2 7.3 96 98-223 190-304 (381)
96 2akz_A Gamma enolase, neural; 71.8 9 0.00031 41.8 8.2 83 116-225 271-374 (439)
97 3jva_A Dipeptide epimerase; en 71.7 5.1 0.00017 41.9 6.1 96 98-223 180-294 (354)
98 3qn3_A Enolase; structural gen 71.4 11 0.00037 41.0 8.7 89 116-229 262-371 (417)
99 3r4e_A Mandelate racemase/muco 71.4 11 0.00038 40.5 8.7 94 98-221 217-329 (418)
100 2ptz_A Enolase; lyase, glycoly 71.3 9.8 0.00033 41.3 8.3 72 130-226 304-379 (432)
101 1kcz_A Beta-methylaspartase; b 71.2 7.7 0.00026 41.4 7.4 68 131-220 288-358 (413)
102 2pp0_A L-talarate/galactarate 70.7 9 0.00031 40.6 7.8 91 98-218 217-326 (398)
103 3stp_A Galactonate dehydratase 70.2 7.3 0.00025 41.9 7.0 93 98-220 227-338 (412)
104 2qkf_A 3-deoxy-D-manno-octulos 69.4 44 0.0015 34.4 12.3 129 90-264 2-164 (280)
105 3na7_A HP0958; flagellar bioge 69.2 1.1 3.9E-05 45.1 0.5 16 623-638 220-235 (256)
106 2al1_A Enolase 1, 2-phospho-D- 69.0 9.6 0.00033 41.6 7.7 84 116-226 274-378 (436)
107 3dgb_A Muconate cycloisomerase 68.6 8.5 0.00029 40.7 7.0 66 130-222 236-304 (382)
108 3otr_A Enolase; structural gen 68.4 14 0.00047 41.0 8.8 88 116-228 282-390 (452)
109 3ro6_B Putative chloromuconate 68.3 3.7 0.00013 43.0 4.1 98 98-222 181-295 (356)
110 3eez_A Putative mandelate race 68.1 6 0.0002 41.8 5.7 101 98-225 186-299 (378)
111 3go2_A Putative L-alanine-DL-g 68.1 9.3 0.00032 40.8 7.2 92 98-220 210-318 (409)
112 3my9_A Muconate cycloisomerase 67.9 5.2 0.00018 42.1 5.2 65 130-221 233-300 (377)
113 1ydn_A Hydroxymethylglutaryl-C 67.3 33 0.0011 34.8 10.8 120 143-282 71-196 (295)
114 3ijl_A Muconate cycloisomerase 67.2 6.4 0.00022 41.0 5.7 86 110-222 180-282 (338)
115 3rcy_A Mandelate racemase/muco 67.1 7 0.00024 42.3 6.1 65 130-221 245-312 (433)
116 1r0m_A N-acylamino acid racema 66.7 11 0.00038 39.4 7.3 67 130-223 230-299 (375)
117 1kko_A 3-methylaspartate ammon 66.4 9.9 0.00034 40.8 7.0 70 130-221 287-359 (413)
118 1nvm_A HOA, 4-hydroxy-2-oxoval 66.2 33 0.0011 35.8 10.8 109 143-294 81-199 (345)
119 3tj4_A Mandelate racemase; eno 66.2 11 0.00037 39.7 7.2 91 98-218 194-303 (372)
120 3sbf_A Mandelate racemase / mu 66.0 9.6 0.00033 40.6 6.8 57 140-218 248-307 (401)
121 1tkk_A Similar to chloromucona 65.8 13 0.00044 38.7 7.6 94 98-221 182-296 (366)
122 2qq6_A Mandelate racemase/muco 65.6 6.6 0.00023 41.7 5.4 93 98-220 207-318 (410)
123 2chr_A Chloromuconate cycloiso 65.4 6.5 0.00022 40.9 5.3 94 98-221 185-297 (370)
124 3igs_A N-acetylmannosamine-6-p 65.3 57 0.0019 32.4 11.8 112 104-261 22-154 (232)
125 3tcs_A Racemase, putative; PSI 65.2 9.1 0.00031 40.8 6.4 69 130-225 241-312 (388)
126 2qiw_A PEP phosphonomutase; st 65.1 25 0.00084 35.9 9.3 125 142-293 78-208 (255)
127 1i60_A IOLI protein; beta barr 64.9 16 0.00054 34.9 7.5 75 165-264 98-173 (278)
128 3cny_A Inositol catabolism pro 64.4 10 0.00036 36.9 6.2 112 131-264 57-189 (301)
129 1o60_A 2-dehydro-3-deoxyphosph 64.3 57 0.0019 33.9 12.0 131 89-265 4-168 (292)
130 3q58_A N-acetylmannosamine-6-p 63.8 62 0.0021 32.1 11.8 112 104-261 22-154 (229)
131 2cw6_A Hydroxymethylglutaryl-C 63.8 31 0.001 35.2 9.8 120 144-282 73-197 (298)
132 3ujp_A Mn transporter subunit; 63.7 4.3 0.00015 42.2 3.5 123 98-235 48-208 (307)
133 1xla_A D-xylose isomerase; iso 63.5 18 0.00061 38.0 8.2 117 131-264 71-215 (394)
134 2pa6_A Enolase; glycolysis, ly 63.4 14 0.00049 39.6 7.6 67 130-223 299-369 (427)
135 3toy_A Mandelate racemase/muco 63.3 12 0.00042 39.7 7.0 90 98-217 210-318 (383)
136 2vef_A Dihydropteroate synthas 63.2 60 0.0021 34.0 12.1 139 122-298 68-236 (314)
137 3ngf_A AP endonuclease, family 63.0 23 0.00078 34.4 8.4 136 105-264 14-184 (269)
138 3ik4_A Mandelate racemase/muco 62.9 11 0.00038 39.6 6.5 79 116-222 199-298 (365)
139 2qdd_A Mandelate racemase/muco 62.6 8.7 0.0003 40.3 5.6 59 140-220 233-294 (378)
140 3s5s_A Mandelate racemase/muco 62.5 12 0.0004 39.9 6.6 79 116-222 200-299 (389)
141 3obe_A Sugar phosphate isomera 62.2 18 0.00062 36.4 7.7 26 194-221 143-168 (305)
142 2ps2_A Putative mandelate race 61.8 8.9 0.0003 40.0 5.5 100 98-224 187-300 (371)
143 3t6c_A RSPA, putative MAND fam 61.5 12 0.00042 40.6 6.7 61 130-217 282-345 (440)
144 2zad_A Muconate cycloisomerase 61.3 28 0.00096 35.9 9.1 92 99-221 180-292 (345)
145 3ddm_A Putative mandelate race 60.9 12 0.0004 39.9 6.3 94 98-218 196-306 (392)
146 3dg3_A Muconate cycloisomerase 60.5 11 0.00038 39.5 6.0 59 142-223 234-295 (367)
147 2gdq_A YITF; mandelate racemas 60.2 12 0.00041 39.4 6.2 59 140-220 232-293 (382)
148 3r0u_A Enzyme of enolase super 59.7 17 0.00059 38.5 7.3 59 142-222 237-298 (379)
149 4e4f_A Mannonate dehydratase; 59.0 16 0.00055 39.4 7.0 90 98-217 225-333 (426)
150 3v5c_A Mandelate racemase/muco 58.9 13 0.00046 39.5 6.3 70 130-222 242-313 (392)
151 3tml_A 2-dehydro-3-deoxyphosph 58.9 34 0.0012 35.7 9.2 97 90-217 4-134 (288)
152 3tji_A Mandelate racemase/muco 58.5 12 0.00042 40.2 6.1 61 130-217 264-327 (422)
153 3mcm_A 2-amino-4-hydroxy-6-hyd 58.5 47 0.0016 36.7 10.6 152 115-298 209-402 (442)
154 2zc8_A N-acylamino acid racema 58.4 9.7 0.00033 39.6 5.1 67 130-223 223-292 (369)
155 2hxt_A L-fuconate dehydratase; 58.2 24 0.00084 37.8 8.3 90 98-217 239-348 (441)
156 2q02_A Putative cytoplasmic pr 58.1 29 0.00099 33.2 8.0 130 103-264 8-169 (272)
157 4hnl_A Mandelate racemase/muco 57.1 13 0.00046 39.6 6.0 60 140-221 268-330 (421)
158 3qld_A Mandelate racemase/muco 57.1 11 0.00039 39.9 5.4 64 130-220 231-297 (388)
159 3sz8_A 2-dehydro-3-deoxyphosph 56.7 1.1E+02 0.0036 32.0 12.4 126 91-262 7-167 (285)
160 1toa_A Tromp-1, protein (perip 55.6 5.9 0.0002 41.1 2.9 127 98-235 55-215 (313)
161 3ugv_A Enolase; enzyme functio 55.5 11 0.00037 40.2 4.9 90 98-217 216-324 (390)
162 3u9i_A Mandelate racemase/muco 55.1 15 0.0005 39.2 5.9 58 142-222 268-328 (393)
163 3tva_A Xylose isomerase domain 54.9 24 0.00082 34.4 7.0 19 130-148 52-70 (290)
164 2hk0_A D-psicose 3-epimerase; 54.9 1.3E+02 0.0043 29.8 12.3 213 103-345 22-304 (309)
165 1m3u_A 3-methyl-2-oxobutanoate 54.4 52 0.0018 34.0 9.6 123 142-307 75-212 (264)
166 1wuf_A Hypothetical protein LI 54.2 18 0.00062 38.2 6.4 58 141-220 249-309 (393)
167 3c8f_A Pyruvate formate-lyase 54.2 48 0.0016 31.0 8.7 48 203-270 87-136 (245)
168 3fv9_G Mandelate racemase/muco 54.1 15 0.00052 38.9 5.8 65 139-225 238-305 (386)
169 3dip_A Enolase; structural gen 52.8 20 0.00068 38.4 6.4 58 142-221 263-323 (410)
170 1v77_A PH1877P, hypothetical p 52.4 11 0.00036 36.9 3.9 69 205-282 115-184 (212)
171 4e8g_A Enolase, mandelate race 52.1 17 0.0006 38.6 5.8 65 139-225 253-320 (391)
172 3tr2_A Orotidine 5'-phosphate 52.0 50 0.0017 33.2 8.9 101 136-263 53-164 (239)
173 3f4w_A Putative hexulose 6 pho 52.0 49 0.0017 31.2 8.4 82 112-218 7-107 (211)
174 1yxy_A Putative N-acetylmannos 50.9 80 0.0027 30.4 9.9 101 99-223 15-140 (234)
175 3l23_A Sugar phosphate isomera 50.9 31 0.001 34.6 7.1 99 101-216 12-159 (303)
176 1xvl_A Mn transporter, MNTC pr 50.5 8.1 0.00028 40.3 3.0 127 98-235 62-222 (321)
177 1icp_A OPR1, 12-oxophytodienoa 50.5 32 0.0011 36.5 7.6 97 195-294 161-275 (376)
178 3ist_A Glutamate racemase; str 48.9 15 0.00051 37.5 4.5 56 234-299 44-100 (269)
179 3can_A Pyruvate-formate lyase- 48.6 1.6E+02 0.0055 26.9 12.0 89 204-338 22-113 (182)
180 1dbt_A Orotidine 5'-phosphate 48.3 63 0.0022 31.8 8.8 95 144-264 54-163 (239)
181 1wue_A Mandelate racemase/muco 48.0 17 0.00058 38.3 4.9 58 141-220 249-309 (386)
182 3ldv_A Orotidine 5'-phosphate 47.9 66 0.0023 32.8 9.1 123 113-263 35-182 (255)
183 4dye_A Isomerase; enolase fami 47.6 24 0.00082 37.7 6.1 59 141-221 258-319 (398)
184 3gd6_A Muconate cycloisomerase 47.4 25 0.00086 37.2 6.2 95 98-223 183-298 (391)
185 1muw_A Xylose isomerase; atomi 47.1 44 0.0015 34.8 7.9 118 130-264 70-215 (386)
186 3l5l_A Xenobiotic reductase A; 47.0 56 0.0019 34.4 8.7 102 193-295 150-266 (363)
187 3ru6_A Orotidine 5'-phosphate 45.7 67 0.0023 33.7 8.9 124 112-263 31-178 (303)
188 4a35_A Mitochondrial enolase s 45.2 42 0.0014 36.4 7.6 64 130-217 287-353 (441)
189 2q5c_A NTRC family transcripti 45.1 1.6E+02 0.0054 28.4 10.9 121 115-250 36-181 (196)
190 3out_A Glutamate racemase; str 44.9 15 0.0005 37.5 3.7 57 234-300 46-104 (268)
191 2pge_A MENC; OSBS, NYSGXRC, PS 44.2 21 0.00071 37.5 4.9 66 130-222 250-320 (377)
192 2oz8_A MLL7089 protein; struct 44.0 1.1E+02 0.0038 32.1 10.4 89 98-220 187-296 (389)
193 3vni_A Xylose isomerase domain 43.0 95 0.0032 30.1 9.1 140 103-264 3-183 (294)
194 2pgw_A Muconate cycloisomerase 42.3 1.5E+02 0.0053 30.9 11.1 84 214-330 190-273 (384)
195 3qxb_A Putative xylose isomera 42.2 38 0.0013 33.7 6.2 81 165-264 128-212 (316)
196 4h1z_A Enolase Q92ZS5; dehydra 41.8 28 0.00095 37.2 5.4 82 116-225 244-344 (412)
197 4h2h_A Mandelate racemase/muco 41.7 26 0.00089 36.8 5.1 64 139-224 239-305 (376)
198 4h83_A Mandelate racemase/muco 41.6 47 0.0016 35.1 7.1 56 140-217 257-315 (388)
199 2qul_A D-tagatose 3-epimerase; 41.2 59 0.002 31.3 7.3 143 103-264 3-184 (290)
200 2ze3_A DFA0005; organic waste 41.0 1.8E+02 0.0061 29.9 11.1 126 142-293 74-208 (275)
201 3ble_A Citramalate synthase fr 40.2 47 0.0016 34.7 6.8 117 144-282 89-210 (337)
202 2j6v_A UV endonuclease, UVDE; 39.7 2.9E+02 0.0099 28.3 12.5 72 201-283 103-183 (301)
203 1o66_A 3-methyl-2-oxobutanoate 39.7 1.2E+02 0.0042 31.5 9.6 89 203-307 120-212 (275)
204 1vyr_A Pentaerythritol tetrani 39.6 77 0.0026 33.5 8.3 98 195-295 155-271 (364)
205 2gl5_A Putative dehydratase pr 38.9 1.4E+02 0.0049 31.3 10.3 86 213-331 217-302 (410)
206 2o56_A Putative mandelate race 37.8 2E+02 0.0068 30.2 11.2 86 213-331 214-299 (407)
207 3ivs_A Homocitrate synthase, m 37.8 4.4E+02 0.015 28.8 14.1 75 193-282 143-221 (423)
208 2yyu_A Orotidine 5'-phosphate 37.8 1.4E+02 0.0049 29.4 9.6 129 108-264 7-164 (246)
209 1vqt_A Orotidine 5'-phosphate 37.7 12 0.00041 36.9 1.7 113 108-263 12-144 (213)
210 2zvr_A Uncharacterized protein 36.9 3E+02 0.01 26.7 12.0 59 192-265 143-202 (290)
211 1mdl_A Mandelate racemase; iso 36.4 2E+02 0.0069 29.6 10.8 86 213-331 188-273 (359)
212 2ozt_A TLR1174 protein; struct 35.7 68 0.0023 33.1 7.1 56 142-222 213-273 (332)
213 3p6l_A Sugar phosphate isomera 35.7 1.3E+02 0.0045 28.7 8.7 88 103-217 11-131 (262)
214 3gk0_A PNP synthase, pyridoxin 35.3 51 0.0018 34.5 6.0 76 131-224 144-220 (278)
215 1z41_A YQJM, probable NADH-dep 35.0 82 0.0028 32.6 7.6 98 195-295 138-249 (338)
216 2ovl_A Putative racemase; stru 35.0 1.8E+02 0.006 30.3 10.1 98 214-346 191-288 (371)
217 1xfc_A Alanine racemase; alpha 34.6 41 0.0014 35.1 5.3 81 203-295 114-211 (384)
218 3bbn_B Ribosomal protein S2; s 34.5 1.3E+02 0.0043 30.5 8.6 101 116-221 42-186 (231)
219 3cyj_A Mandelate racemase/muco 34.2 90 0.0031 32.6 7.8 58 142-221 238-298 (372)
220 3l5a_A NADH/flavin oxidoreduct 34.2 71 0.0024 34.6 7.2 101 194-295 163-285 (419)
221 3uhf_A Glutamate racemase; str 34.1 23 0.00078 36.5 3.2 56 234-299 63-119 (274)
222 3lmz_A Putative sugar isomeras 34.1 44 0.0015 32.1 5.1 88 103-217 19-129 (257)
223 3gr7_A NADPH dehydrogenase; fl 34.1 33 0.0011 35.9 4.5 99 193-294 136-248 (340)
224 3vc5_A Mandelate racemase/muco 34.0 46 0.0016 36.2 5.7 60 140-221 277-339 (441)
225 3s1x_A Probable transaldolase; 33.8 83 0.0028 31.8 7.1 57 103-166 56-127 (223)
226 3va8_A Probable dehydratase; e 33.7 51 0.0018 35.9 6.0 61 139-221 279-342 (445)
227 1q6o_A Humps, 3-keto-L-gulonat 33.7 72 0.0025 30.6 6.5 84 108-217 6-109 (216)
228 1ps9_A 2,4-dienoyl-COA reducta 33.5 95 0.0033 34.8 8.3 99 204-327 195-309 (671)
229 1l8d_A DNA double-strand break 33.4 20 0.00069 31.4 2.3 12 626-637 48-59 (112)
230 3ekg_A Mandelate racemase/muco 33.3 87 0.003 33.8 7.6 64 130-218 252-318 (404)
231 1jpd_X L-Ala-D/L-Glu epimerase 33.3 33 0.0011 35.3 4.2 59 142-222 220-279 (324)
232 2p3z_A L-rhamnonate dehydratas 33.2 45 0.0016 35.9 5.4 63 130-219 264-330 (415)
233 3m47_A Orotidine 5'-phosphate 33.2 1.2E+02 0.004 30.0 8.0 118 112-264 19-158 (228)
234 2zad_A Muconate cycloisomerase 33.1 3E+02 0.01 28.2 11.4 86 212-330 180-267 (345)
235 2a5h_A L-lysine 2,3-aminomutas 33.1 80 0.0027 33.8 7.3 22 202-223 180-203 (416)
236 1ydo_A HMG-COA lyase; TIM-barr 33.1 86 0.0029 32.4 7.3 117 144-282 74-198 (307)
237 1olt_A Oxygen-independent copr 33.1 1E+02 0.0035 33.2 8.1 74 206-282 155-232 (457)
238 2g0w_A LMO2234 protein; putati 32.9 1.3E+02 0.0043 29.7 8.3 25 102-126 23-47 (296)
239 3jr2_A Hexulose-6-phosphate sy 32.8 66 0.0023 31.0 6.1 81 112-217 13-112 (218)
240 3hgj_A Chromate reductase; TIM 32.4 98 0.0034 32.3 7.7 101 193-295 144-259 (349)
241 2qde_A Mandelate racemase/muco 32.0 1.7E+02 0.0058 30.7 9.5 84 214-330 189-272 (397)
242 3gd6_A Muconate cycloisomerase 31.9 3.9E+02 0.013 28.1 12.3 54 114-170 140-215 (391)
243 2qgy_A Enolase from the enviro 31.7 2.7E+02 0.0093 29.2 11.0 86 213-331 193-278 (391)
244 3vdg_A Probable glucarate dehy 31.2 50 0.0017 36.0 5.4 58 142-221 284-344 (445)
245 1pq4_A Periplasmic binding pro 31.2 11 0.00037 38.6 0.2 126 98-236 19-209 (291)
246 2poz_A Putative dehydratase; o 31.0 2.1E+02 0.007 30.0 9.9 86 213-331 198-283 (392)
247 1rvk_A Isomerase/lactonizing e 30.8 3E+02 0.01 28.5 11.1 85 213-330 199-284 (382)
248 1l6w_A Fructose-6-phosphate al 30.5 95 0.0032 31.1 6.9 55 103-164 53-123 (220)
249 1dxe_A 2-dehydro-3-deoxy-galac 30.4 1.1E+02 0.0039 30.4 7.5 60 198-282 194-253 (256)
250 2okt_A OSB synthetase, O-succi 30.4 53 0.0018 33.9 5.2 59 141-221 211-272 (342)
251 3ewb_X 2-isopropylmalate synth 30.0 1.9E+02 0.0064 29.7 9.1 71 197-282 117-191 (293)
252 2qw5_A Xylose isomerase-like T 30.0 2.6E+02 0.0087 27.9 10.0 105 103-217 10-180 (335)
253 1oy0_A Ketopantoate hydroxymet 29.6 2E+02 0.0069 29.9 9.3 90 203-307 138-230 (281)
254 2opj_A O-succinylbenzoate-COA 29.3 40 0.0014 35.0 4.1 55 142-221 171-228 (327)
255 3hh8_A Metal ABC transporter s 29.1 19 0.00066 36.9 1.6 154 98-262 34-238 (294)
256 4ab4_A Xenobiotic reductase B; 28.8 1.1E+02 0.0037 32.6 7.3 98 194-294 146-261 (362)
257 3rcy_A Mandelate racemase/muco 28.6 3E+02 0.01 29.7 10.9 99 213-346 202-300 (433)
258 1wx0_A Transaldolase; structur 28.4 1.1E+02 0.0037 30.7 6.9 55 103-164 62-130 (223)
259 2ggt_A SCO1 protein homolog, m 28.4 34 0.0012 29.8 2.9 30 684-713 130-162 (164)
260 1olt_A Oxygen-independent copr 28.2 1.8E+02 0.0062 31.2 9.1 53 202-272 122-179 (457)
261 2lrn_A Thiol:disulfide interch 28.2 11 0.00037 33.1 -0.4 38 674-712 104-141 (152)
262 3ia1_A THIO-disulfide isomeras 28.2 15 0.0005 32.0 0.5 46 673-720 103-148 (154)
263 3fxg_A Rhamnonate dehydratase; 28.0 75 0.0026 35.0 6.1 53 144-218 268-323 (455)
264 2ox4_A Putative mandelate race 27.8 1.9E+02 0.0064 30.4 8.9 85 213-330 208-292 (403)
265 2trc_P Phosducin, MEKA, PP33; 27.6 83 0.0028 30.5 5.8 67 644-716 141-213 (217)
266 2pju_A Propionate catabolism o 27.5 3.8E+02 0.013 26.6 10.6 122 115-250 46-192 (225)
267 4e4u_A Mandalate racemase/muco 27.4 4E+02 0.014 28.4 11.5 139 165-346 160-298 (412)
268 3hgj_A Chromate reductase; TIM 27.0 2.6E+02 0.009 29.0 9.8 69 243-325 239-315 (349)
269 3vni_A Xylose isomerase domain 27.0 3.4E+02 0.011 26.2 10.0 116 154-293 18-151 (294)
270 2z2u_A UPF0026 protein MJ0257; 27.0 1.5E+02 0.0053 29.4 7.8 44 202-268 144-187 (311)
271 3sjn_A Mandelate racemase/muco 26.9 1.8E+02 0.0062 30.4 8.6 100 213-346 192-291 (374)
272 3ktc_A Xylose isomerase; putat 26.7 61 0.0021 32.7 4.8 149 91-264 10-201 (333)
273 1vpx_A Protein (transaldolase 26.7 1E+02 0.0035 31.2 6.4 55 103-164 65-133 (230)
274 3u0h_A Xylose isomerase domain 26.7 1.7E+02 0.0058 27.9 7.7 138 104-264 6-178 (281)
275 3o07_A Pyridoxine biosynthesis 26.7 3.6E+02 0.012 28.4 10.6 131 138-293 109-257 (291)
276 4b3l_A Beta-glucosidase; hydro 26.5 98 0.0033 34.3 6.7 52 203-254 98-150 (479)
277 4euy_A Uncharacterized protein 25.8 62 0.0021 26.4 3.9 41 651-696 46-86 (105)
278 2o1e_A YCDH; alpha-beta protei 25.7 35 0.0012 35.2 2.9 125 98-235 38-208 (312)
279 2qc7_A ERP31, ERP28, endoplasm 25.7 70 0.0024 31.9 4.9 82 623-715 27-118 (240)
280 4gfi_A Mandelate racemase/muco 25.6 29 0.00098 35.7 2.2 63 139-223 215-278 (329)
281 2rdx_A Mandelate racemase/muco 25.5 2.2E+02 0.0076 29.6 9.0 82 214-331 189-270 (379)
282 1c1d_A L-phenylalanine dehydro 25.5 29 0.00098 37.1 2.2 56 166-221 277-337 (355)
283 2v82_A 2-dehydro-3-deoxy-6-pho 25.5 4.2E+02 0.014 24.8 10.8 81 107-221 11-108 (212)
284 3cqj_A L-ribulose-5-phosphate 25.3 2.2E+02 0.0077 27.6 8.5 119 153-292 30-165 (295)
285 1leh_A Leucine dehydrogenase; 25.0 34 0.0012 36.4 2.7 39 182-220 296-334 (364)
286 2ztj_A Homocitrate synthase; ( 24.8 4.1E+02 0.014 28.2 10.9 116 139-281 61-184 (382)
287 2v5j_A 2,4-dihydroxyhept-2-ENE 24.7 1.3E+02 0.0045 30.8 6.9 62 198-284 215-276 (287)
288 3tkf_A Transaldolase; structur 24.7 2.6E+02 0.0088 30.0 9.3 58 223-282 117-176 (345)
289 3iix_A Biotin synthetase, puta 24.7 1.2E+02 0.0039 30.7 6.4 49 202-270 118-166 (348)
290 2xhy_A BGLA, 6-phospho-beta-gl 24.4 1.2E+02 0.0042 33.4 7.0 52 203-254 114-166 (479)
291 1xim_A D-xylose isomerase; iso 24.4 1.3E+02 0.0046 31.3 7.0 83 165-264 130-215 (393)
292 3l5l_A Xenobiotic reductase A; 24.3 4.1E+02 0.014 27.8 10.8 70 242-325 245-322 (363)
293 3ttc_A HYPF, transcriptional r 24.3 25 0.00086 40.6 1.6 42 618-659 82-129 (657)
294 1m5w_A Pyridoxal phosphate bio 24.2 78 0.0027 32.6 5.0 73 134-224 119-192 (243)
295 1tv8_A MOAA, molybdenum cofact 24.1 1.6E+02 0.0053 29.8 7.3 50 202-270 82-133 (340)
296 2r14_A Morphinone reductase; H 24.1 1.6E+02 0.0055 31.2 7.6 100 156-264 170-276 (377)
297 3ayv_A Putative uncharacterize 24.1 90 0.0031 29.7 5.2 71 165-264 90-161 (254)
298 2a2p_A Selenoprotein M, SELM p 24.0 54 0.0018 30.8 3.5 78 620-718 14-93 (129)
299 1wa3_A 2-keto-3-deoxy-6-phosph 24.0 1.8E+02 0.0062 27.1 7.3 68 144-262 62-130 (205)
300 2nx9_A Oxaloacetate decarboxyl 23.9 2.6E+02 0.0088 30.9 9.4 74 202-293 128-205 (464)
301 2bdq_A Copper homeostasis prot 23.9 2.4E+02 0.0081 28.6 8.4 89 186-282 69-174 (224)
302 3hjz_A Transaldolase B; parach 23.8 2.6E+02 0.009 29.7 9.1 58 223-282 94-153 (334)
303 1w8s_A FBP aldolase, fructose- 23.8 1.3E+02 0.0046 30.2 6.7 68 200-282 124-193 (263)
304 2wqp_A Polysialic acid capsule 23.7 6.9E+02 0.023 26.6 13.4 104 89-221 5-155 (349)
305 3f5l_A Beta-glucosidase; beta- 23.7 1.3E+02 0.0045 33.3 7.1 51 204-254 116-167 (481)
306 2yx0_A Radical SAM enzyme; pre 23.4 1.7E+02 0.0057 29.8 7.4 49 202-270 158-208 (342)
307 3gka_A N-ethylmaleimide reduct 23.3 1E+02 0.0035 32.7 5.9 98 194-294 154-269 (361)
308 1r26_A Thioredoxin; redox-acti 23.2 37 0.0013 29.4 2.2 74 627-712 48-123 (125)
309 3kh7_A Thiol:disulfide interch 23.2 25 0.00084 32.1 1.0 39 674-713 127-168 (176)
310 2r14_A Morphinone reductase; H 23.0 1.7E+02 0.0059 31.0 7.6 99 194-295 159-275 (377)
311 3oa3_A Aldolase; structural ge 23.0 93 0.0032 32.6 5.4 133 130-301 97-242 (288)
312 3vth_A Hydrogenase maturation 23.0 28 0.00095 40.8 1.6 19 618-636 176-194 (761)
313 2vvt_A Glutamate racemase; iso 22.8 75 0.0026 32.4 4.6 56 234-299 63-119 (290)
314 2qul_A D-tagatose 3-epimerase; 22.3 4E+02 0.014 25.4 9.5 86 154-264 18-109 (290)
315 3aam_A Endonuclease IV, endoiv 22.2 3E+02 0.01 26.2 8.6 78 202-283 50-128 (270)
316 1eix_A Orotidine 5'-monophosph 22.0 2.1E+02 0.0071 28.3 7.5 128 109-264 18-170 (245)
317 3bjs_A Mandelate racemase/muco 22.0 2.9E+02 0.0099 29.5 9.2 86 213-331 228-314 (428)
318 3mhs_C SAGA-associated factor 21.9 32 0.0011 31.1 1.4 14 621-634 66-79 (99)
319 1yx1_A Hypothetical protein PA 21.9 94 0.0032 29.9 4.9 47 155-225 86-135 (264)
320 3tva_A Xylose isomerase domain 21.9 2.3E+02 0.0079 27.3 7.8 92 202-293 52-158 (290)
321 3m16_A Transaldolase; dimer, m 21.8 3.1E+02 0.01 29.2 9.1 58 223-282 98-157 (329)
322 3ih1_A Methylisocitrate lyase; 21.7 2.2E+02 0.0076 29.8 8.0 50 242-301 174-223 (305)
323 3zzx_A Thioredoxin; oxidoreduc 21.6 62 0.0021 27.6 3.2 79 623-714 25-104 (105)
324 1nu5_A Chloromuconate cycloiso 21.5 4.5E+02 0.015 27.1 10.3 84 214-330 188-271 (370)
325 1n7k_A Deoxyribose-phosphate a 21.4 3.1E+02 0.011 27.6 8.7 114 133-282 61-190 (234)
326 2vws_A YFAU, 2-keto-3-deoxy su 21.4 1.4E+02 0.0049 30.0 6.3 60 199-283 195-254 (267)
327 3r12_A Deoxyribose-phosphate a 21.3 1.6E+02 0.0054 30.4 6.6 131 130-301 82-224 (260)
328 3ngf_A AP endonuclease, family 21.2 1.1E+02 0.0037 29.6 5.2 62 198-266 90-151 (269)
329 1xla_A D-xylose isomerase; iso 21.2 2.2E+02 0.0074 29.7 7.9 61 200-264 115-179 (394)
330 3fkf_A Thiol-disulfide oxidore 21.1 51 0.0017 27.9 2.6 39 673-712 108-146 (148)
331 1qwg_A PSL synthase;, (2R)-pho 21.1 54 0.0018 33.8 3.1 95 144-270 14-112 (251)
332 3l23_A Sugar phosphate isomera 20.9 2E+02 0.0068 28.6 7.2 90 203-293 61-165 (303)
333 2e72_A POGO transposable eleme 20.9 42 0.0014 26.9 1.7 20 627-647 14-33 (49)
334 2vd8_A Alanine racemase; pyrid 20.8 65 0.0022 33.8 3.8 81 203-295 115-209 (391)
335 3m5v_A DHDPS, dihydrodipicolin 20.8 3E+02 0.01 28.1 8.6 112 144-292 17-137 (301)
336 3dip_A Enolase; structural gen 20.4 6.5E+02 0.022 26.7 11.5 99 213-346 212-311 (410)
337 1vzw_A Phosphoribosyl isomeras 20.4 1E+02 0.0035 29.7 4.8 134 142-319 73-211 (244)
338 2dbc_A PDCL2, unnamed protein 20.3 59 0.002 28.5 2.9 58 652-717 59-122 (135)
339 4g9i_A Hydrogenase maturation 20.2 26 0.0009 41.0 0.7 43 617-659 170-218 (772)
340 2jvf_A De novo protein M7; tet 20.1 67 0.0023 27.8 3.0 53 203-269 38-90 (96)
341 3gnp_A OS03G0212800 protein; b 20.0 1.6E+02 0.0056 32.6 6.9 51 204-254 113-164 (488)
342 3flu_A DHDPS, dihydrodipicolin 20.0 3.2E+02 0.011 27.8 8.7 65 205-292 68-136 (297)
No 1
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=100.00 E-value=1.4e-127 Score=1012.56 Aligned_cols=331 Identities=39% Similarity=0.652 Sum_probs=316.1
Q ss_pred cccCCCCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCC
Q 004907 81 HKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNY 143 (724)
Q Consensus 81 ~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~ 143 (724)
.+++||+||+|+||+|+|||++||+|||||||+|.|+++|++||.+|++ +++.|++ ++
T Consensus 9 ~~~~rr~tr~v~VG~v~IGG~~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~-----~~ 83 (366)
T 3noy_A 9 SMIQKRKTRQIRVGNVKIGGDAPIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVK-----KS 83 (366)
T ss_dssp -CCCCCCCCCEEETTEEESTTSCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHH-----HC
T ss_pred cceeeccceEEEECCEEEcCCCcEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHh-----cC
Confidence 4678999999999999999999999999999999999999999999999 6667766 59
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
++||||||||||++|++|+++ +||+||||||||+++ +|++||++||++|+|||||||
T Consensus 84 ~vPlvaDiHf~~~lal~a~e~G~dklRINPGNig~~~----------------------~~~~vv~~ak~~~~piRIGvN 141 (366)
T 3noy_A 84 PMPVIADIHFAPSYAFLSMEKGVHGIRINPGNIGKEE----------------------IVREIVEEAKRRGVAVRIGVN 141 (366)
T ss_dssp SSCEEEECCSCHHHHHHHHHTTCSEEEECHHHHSCHH----------------------HHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCCeEEECCcccCchh----------------------HHHHHHHHHHHcCCCEEEecC
Confidence 999999999999999999999 999999999999743 589999999999999999999
Q ss_pred cCCCchHHHhhcC-CCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCC
Q 004907 223 HGSLSDRIMSYYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE 301 (724)
Q Consensus 223 ~GSL~~~il~~yg-~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~ 301 (724)
||||+++++++|| +||++|||||++++++||++||+||+||+|+|||++||+|||+|+++ +||||||||||||+
T Consensus 142 ~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~iviS~K~S~v~~~i~ayr~la~~-----~dyPLHlGvTEAG~ 216 (366)
T 3noy_A 142 SGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTNYKVSIKGSDVLQNVRANLIFAER-----TDVPLHIGITEAGM 216 (366)
T ss_dssp GGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHH-----CCCCEEECCSSCCS
T ss_pred CcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCeEEEeeecCChHHHHHHHHHHHhc-----cCCCEEEccCCCCC
Confidence 9999999999999 79999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHhhhhhhhhccCCchhhhccccccccccccCCCCccc
Q 004907 302 GEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANLGMRAAELQQGVAPFEEKHRHYFDFQRRSGQLPIQK 381 (724)
Q Consensus 302 ~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~~~~~~~~~~~~~~f~~~~~~~~~~~rr~~~~~~~~ 381 (724)
+.+|+||||+|||+||.||||||||||||+||++||++|+
T Consensus 217 ~~~G~ikSsigiG~LL~dGIGDTIRVSLt~~p~~Ev~va~---------------------------------------- 256 (366)
T 3noy_A 217 GTKGIIKSSVGIGILLYMGIGDTVRVSLTDDPVVEVETAY---------------------------------------- 256 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCSEECCCCSSCHHHHHHHHH----------------------------------------
T ss_pred CcceeeehHHHHHHHHHhcccceEEEeCCCCcHHHHHHHH----------------------------------------
Confidence 9999999999999999999999999999999998887763
Q ss_pred cCCccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcCCCCCCchhHHHHHHHHhhccc
Q 004907 382 EGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRELPSVDDHDARLALKRLVDISM 461 (724)
Q Consensus 382 ~g~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~~~~~~~~~~~~~l~~~~~~~~ 461 (724)
T Consensus 257 -------------------------------------------------------------------------------- 256 (366)
T 3noy_A 257 -------------------------------------------------------------------------------- 256 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCCccchhhhhhhhhhccccccCCcccceeEeccCCCCHHHHHHhhcCCceEEEeeCCCCCCccchhHH
Q 004907 462 GVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDIDATMILHDLPFNEDKIGRVQA 541 (724)
Q Consensus 462 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~~~vvi~l~~~~~s~~~~~v~~ 541 (724)
T Consensus 257 -------------------------------------------------------------------------------- 256 (366)
T 3noy_A 257 -------------------------------------------------------------------------------- 256 (366)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCCChhhhhHHHHHHHHHhhccCC
Q 004907 542 ARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQDFDFLRDTSFNLLQGCRMRNT 621 (724)
Q Consensus 542 ~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~~~~~i~~v~~~ILQa~r~R~~ 621 (724)
+|||++|+|.+
T Consensus 257 ---------------------------------------------------------------------~ILqslglR~~ 267 (366)
T 3noy_A 257 ---------------------------------------------------------------------EILKSLGLRRR 267 (366)
T ss_dssp ---------------------------------------------------------------------HHHHHTTSCCS
T ss_pred ---------------------------------------------------------------------HHHHhcCCCcC
Confidence 34777899999
Q ss_pred cceeecCCCCccccccHHHHHHHHHHHhcCCC-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCCh
Q 004907 622 KTEYVSCPSCGRTLFDLQEISAEIREKTSHLP-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAM 700 (724)
Q Consensus 622 kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipe 700 (724)
+++||||||||||+||||+++++|+++|.|+| |+|||||||||||||||+||||||+|| +|++.||++|++++ ++|+
T Consensus 268 g~~~ISCPtCGRt~~dl~~~~~~ie~~l~~~~~~lkVAVMGCvVNGPGEa~~ADiGiagg-~~~~~lf~~Ge~v~-~v~~ 345 (366)
T 3noy_A 268 GVEIVACPTCGRIEVDLPKVVKEVQEKLSGVKTPLKVAVMGCVVNAIGEAREADIGLACG-RGFAWLFKHGKPIK-KVDE 345 (366)
T ss_dssp SCEEEECCCCTTCCSCHHHHHHHHHHHTTTCCSCCEEEEESSSHHHHHHTTTCSEEEEEC-SSEEEEEETTEEEE-EEES
T ss_pred CCEEEECCCCCCccccHHHHHHHHHHHHhCCCCCCEEEEEcccccCCchhhhCCEeEecC-CCceEEEECCEEee-ecCH
Confidence 99999999999999999999999999999999 999999999999999999999999996 89999999999999 5999
Q ss_pred hHHHHHHHHHHHhc
Q 004907 701 EQATDALIQLIKDH 714 (724)
Q Consensus 701 eeavd~Li~lIk~~ 714 (724)
++++|+|+++|++.
T Consensus 346 ~~~~~~l~~~I~~~ 359 (366)
T 3noy_A 346 SEMVDELLKEIQNM 359 (366)
T ss_dssp CHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999975
No 2
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=100.00 E-value=1.3e-125 Score=1009.66 Aligned_cols=340 Identities=36% Similarity=0.604 Sum_probs=311.2
Q ss_pred ccCCCCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCC
Q 004907 82 KTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYN 144 (724)
Q Consensus 82 ~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~ 144 (724)
++.||+||+|+||+|+|||+|||+|||||||+|.|+++|++||++|++ |+++|+++|++++++
T Consensus 2 ~~~Rr~Tr~V~VG~v~IGG~~PI~VQSMtnT~T~Dv~aTv~QI~~L~~aG~eiVRvaVp~~~~A~al~~I~~~l~~~~~~ 81 (406)
T 4g9p_A 2 EGMRRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVE 81 (406)
T ss_dssp CCCCCCCCCEEETTEEESTTSCCEEEEECCSCTTCHHHHHHHHHHHHHHTCSEEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCccCeeEEEcCEeeCCCCceeeeecCCCCcccHHHHHHHHHHHHHcCCCEEEEecCCHHHHHhHHHHHHHHHhcCCC
Confidence 468999999999999999999999999999999999999999999999 899999999999999
Q ss_pred cceeecCCCCHHHHHHHh----hhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 145 IPLVADIHFAPSVALRVA----ECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 145 iPLVADIHF~~~lAl~a~----~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+||||||||||++||.|+ +.+||+||||||||+++++ +++|++||++||++|+|||||
T Consensus 82 vPLVADiHF~~~~al~a~~~~a~~~dkiRINPGNig~~~k~------------------~e~~~~vv~~ak~~~~pIRIG 143 (406)
T 4g9p_A 82 VPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGRHK------------------DEHFAEMIRIAMDLGKPVRIG 143 (406)
T ss_dssp CCEEEECCSSHHHHHHHCHHHHHHCSEEEECTTSSCSTHHH------------------HHHHHHHHHHHHHHTCCEEEE
T ss_pred CceEeeecccHHHHHHHHHHHHhHHhhcccCccccCccccH------------------HHHHHHHHHHHHHccCCceec
Confidence 999999999999999643 3599999999999987654 578999999999999999999
Q ss_pred eccCCCchHHHhhcCC------Cc--------hHHHHHHHHHHHHHHHCCC--CcEEEEEecCChhHHHHHHHHHHHHhh
Q 004907 221 TNHGSLSDRIMSYYGD------SP--------RGMVESAFEFARICRKLDF--HNFLFSMKASNPVVMVQAYRLLVAEMY 284 (724)
Q Consensus 221 vN~GSL~~~il~~yg~------t~--------~amVeSAle~~~i~e~~~F--~diviS~KaSnv~~~v~Ayrlla~~m~ 284 (724)
||||||++++|++||| +| |||||||++|+++|+++|| +||+||||+|||++||+|||+|+++
T Consensus 144 VN~GSL~~~ll~k~~d~~~~~~~p~~~~~v~~eamVeSAl~~~~~~~~~~f~~~~iviS~KaSdv~~~i~aYr~la~~-- 221 (406)
T 4g9p_A 144 ANWGSLDPALLTELMDRNASRPEPKSAHEVVLEALVESAVRAYEAALEMGLGEDKLVLSAKVSKARDLVWVYRELARR-- 221 (406)
T ss_dssp EEGGGCCHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEECSSHHHHHHHHHHHHHH--
T ss_pred cccccccHHHHHHhhcccccCCCccchhhhHHHHHHHHHHHHHHHHHHcCCChhheEEEeecCCHHHHHHHHHHHHHh--
Confidence 9999999999999974 33 8999999999999999888 7899999999999999999999999
Q ss_pred cCCCCccccccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcc----cchHHHHHHHhhhhhhhhccCCchh
Q 004907 285 VHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEK----EIDPCRRLANLGMRAAELQQGVAPF 360 (724)
Q Consensus 285 ~~g~dYPLHLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~----EV~v~~~Ll~~~~~~~~~~~~~~~f 360 (724)
+||||||||||||++.+|+||||+|||+||+||||||||||||+||++ ||+|
T Consensus 222 ---~dyPLHLGvTEAG~~~~G~IKSaigiG~LL~~GIGDTIRVSLT~dP~e~~~~EV~v--------------------- 277 (406)
T 4g9p_A 222 ---TQAPLHLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPSPKEPRTKEVEV--------------------- 277 (406)
T ss_dssp ---CCSCBEECCTTCBSHHHHHHHHHHHHHHHHHTTCCSEEECCBCCCTTSCTTHHHHH---------------------
T ss_pred ---CCCCceeeeecCCCcccceechHHHHHHHHhccCchhEEeeccCCCCcccHHHHHH---------------------
Confidence 899999999999999999999999999999999999999999999987 4443
Q ss_pred hhccccccccccccCCCCccccCCccccccccccCCceeeecccccccchhHHHHHhHhhHhcCCCcccccccchhhhcC
Q 004907 361 EEKHRHYFDFQRRSGQLPIQKEGEEVDYRGVLHRDGSVLMSVSLDQLKAPELLYKSLAAKLVVGMPFKDLATVDSILLRE 440 (724)
Q Consensus 361 ~~~~~~~~~~~rr~~~~~~~~~g~~~~~~~~l~~~~~v~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~D~i~~~~ 440 (724)
T Consensus 278 -------------------------------------------------------------------------------- 277 (406)
T 4g9p_A 278 -------------------------------------------------------------------------------- 277 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCchhHHHHHHHHhhccccccccccccccCCCccchhhhhhhhhhccccccCCcccceeEeccCCCCHHHHHHhhcC
Q 004907 441 LPSVDDHDARLALKRLVDISMGVITPLSEQLTKPLPHAMVLVNLQELSTGAYKLLPEGTRLVVSLRGDESYEELEILKDI 520 (724)
Q Consensus 441 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~l~~~ 520 (724)
T Consensus 278 -------------------------------------------------------------------------------- 277 (406)
T 4g9p_A 278 -------------------------------------------------------------------------------- 277 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 600 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 600 (724)
T Consensus 278 -------------------------------------------------------------------------------- 277 (406)
T 4g9p_A 278 -------------------------------------------------------------------------------- 277 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ChhhhhHHHHHHHHHhhccCCcceeecCCCCccccccHHH-HHHHHHHH-----------hcCCCCcEEEEeeeeecCCC
Q 004907 601 DFDFLRDTSFNLLQGCRMRNTKTEYVSCPSCGRTLFDLQE-ISAEIREK-----------TSHLPGVSIAIMGCIVNGPG 668 (724)
Q Consensus 601 ~~~~i~~v~~~ILQa~r~R~~kte~ISCPsCGRTlfDLq~-~~~~Ik~~-----------t~hLkgvkIAVMGCIVNGPG 668 (724)
||+|||++++|.+++++|||||||||.||+++ ++++|+++ +.|++++|||||||||||||
T Consensus 278 --------a~~ILqslglR~~~~~iiSCPtCGRt~~d~~~~la~~v~~~l~~~~~~~~~~~~~~~~l~VAVMGCvVNGPG 349 (406)
T 4g9p_A 278 --------AQEILQALGLRAFAPEVTSCPGCGRTTSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPG 349 (406)
T ss_dssp --------HHHHHHHTTSCCCSCEEEECCCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGCEEEEESSTTTHHH
T ss_pred --------HHHHHHHhCCcccCCCcccCCCCCcCcchHHHHHHHHHHHHHhhhhhhhhhccCCCCCCEEEEECCcccCcc
Confidence 55668889999999999999999999999754 44444333 35777999999999999999
Q ss_pred CCCCCceeeecC---CCceeEeeecceeeeecCChhHHHHHHHHHHHhc
Q 004907 669 EMADADFGYVGG---APGKIDLYVGKTVVKRGIAMEQATDALIQLIKDH 714 (724)
Q Consensus 669 EmadAD~GyvGg---~pGki~Ly~gke~V~~~Ipeeeavd~Li~lIk~~ 714 (724)
||+||||||+|+ +.++..+|+++++++ ++|+++++|+|+++|+++
T Consensus 350 Ea~~ADiGi~~~G~G~~~~~~lf~~G~~~~-~v~~~~iv~~l~~~i~~~ 397 (406)
T 4g9p_A 350 ESKHAHIGISLPGAGEEPKAPVYADGKLLT-ILKGEGIAEEFLRLVEDY 397 (406)
T ss_dssp HHHHSSEEEECCCTTSCSEEEEEETTEEEE-EEESSCHHHHHHHHHHHH
T ss_pred hhhhcCcCcccCCCCCCCeeeEEECCEEEE-ecCHHHHHHHHHHHHHHH
Confidence 999999999963 455788999999988 599999999999999974
No 3
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*
Probab=99.60 E-value=6e-16 Score=166.39 Aligned_cols=73 Identities=15% Similarity=0.225 Sum_probs=69.1
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 600 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 600 (724)
++++||+| +|+...++.+||+|.++ ++||| |||+||||.+.+|+||||+|+|+||.|||||||||||+++
T Consensus 197 ~~iviS~K---aSdv~~~i~aYr~la~~-----~dyPL--HLGvTEAG~~~~G~IKSaigiG~LL~~GIGDTIRVSLT~d 266 (406)
T 4g9p_A 197 DKLVLSAK---VSKARDLVWVYRELARR-----TQAPL--HLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPS 266 (406)
T ss_dssp GGEEEEEE---CSSHHHHHHHHHHHHHH-----CCSCB--EECCTTCBSHHHHHHHHHHHHHHHHHTTCCSEEECCBCCC
T ss_pred hheEEEee---cCCHHHHHHHHHHHHHh-----CCCCc--eeeeecCCCcccceechHHHHHHHHhccCchhEEeeccCC
Confidence 57999999 89999999999999875 69999 9999999999999999999999999999999999999999
Q ss_pred Chh
Q 004907 601 DFD 603 (724)
Q Consensus 601 ~~~ 603 (724)
|.+
T Consensus 267 P~e 269 (406)
T 4g9p_A 267 PKE 269 (406)
T ss_dssp TTS
T ss_pred CCc
Confidence 875
No 4
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=99.54 E-value=4.2e-15 Score=157.98 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=71.2
Q ss_pred CceEEEeeCCCCCCccchhHHHHHHHHHHHhcCCCCCeEEeecccCCCCCcchhhHHHHHHHHHhhhcCCCeEEeeCCCC
Q 004907 521 DATMILHDLPFNEDKIGRVQAARRLFEYLSENNLNFPVIHHIQFPNGIHRDDLVIGAGTNVGALLVDGLGDGLLLEAPGQ 600 (724)
Q Consensus 521 ~~vvi~l~~~~~s~~~~~v~~~R~l~~~l~~~~~~~Pli~hl~~teag~~ed~~IkSa~~iG~LL~DGiGDtIrvsl~~~ 600 (724)
+++++|+| +|+...++.+||+|.++ ++||| |||+||||.+.+|+||||+|+|+||+|||||||||||+++
T Consensus 178 ~~iviS~K---~S~v~~~i~ayr~la~~-----~dyPL--HlGvTEAG~~~~G~ikSsigiG~LL~dGIGDTIRVSLt~~ 247 (366)
T 3noy_A 178 TNYKVSIK---GSDVLQNVRANLIFAER-----TDVPL--HIGITEAGMGTKGIIKSSVGIGILLYMGIGDTVRVSLTDD 247 (366)
T ss_dssp CCEEEEEE---CSSHHHHHHHHHHHHHH-----CCCCE--EECCSSCCSHHHHHHHHHHHHHHHHHTTCCSEECCCCSSC
T ss_pred CeEEEeee---cCChHHHHHHHHHHHhc-----cCCCE--EEccCCCCCCcceeeehHHHHHHHHHhcccceEEEeCCCC
Confidence 78999999 89999999999999887 79999 9999999999999999999999999999999999999998
Q ss_pred Chhhh
Q 004907 601 DFDFL 605 (724)
Q Consensus 601 ~~~~i 605 (724)
|++|+
T Consensus 248 p~~Ev 252 (366)
T 3noy_A 248 PVVEV 252 (366)
T ss_dssp HHHHH
T ss_pred cHHHH
Confidence 88776
No 5
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=98.84 E-value=1.9e-08 Score=102.86 Aligned_cols=164 Identities=13% Similarity=0.143 Sum_probs=126.3
Q ss_pred CceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------------------HHHHHHHHhhh
Q 004907 87 KTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------------------ACFEIKNSLVQ 140 (724)
Q Consensus 87 ~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------------------a~~~I~~~L~~ 140 (724)
++++|.||++.||++ |++|+.++ ...|.+.+.+.+.++++ .++.+++ .+
T Consensus 9 ~~~~i~i~~~~iG~~-~~vIAgpc--~~~~~e~a~~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~--~~ 83 (262)
T 1zco_A 9 EKTVVKINDVKFGEG-FTIIAGPC--SIESREQIMKVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMRE--AA 83 (262)
T ss_dssp SCCCEEETTEEETSS-CEEEEECS--BCCCHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHH--HH
T ss_pred CCceEEECCEEECCC-cEEEEeCC--CCCCHHHHHHHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHH--HH
Confidence 678899999999999 99999994 56689999999999998 3455555 34
Q ss_pred cCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 141 KNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 141 ~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+...+|+++|+|....+. .+++.++.+.|.++|+.+ .++++++-+.|+||.+
T Consensus 84 ~~~Gl~~~te~~d~~~~~-~l~~~vd~~kIga~~~~n--------------------------~~ll~~~a~~~kPV~l- 135 (262)
T 1zco_A 84 DEYGLVTVTEVMDTRHVE-LVAKYSDILQIGARNSQN--------------------------FELLKEVGKVENPVLL- 135 (262)
T ss_dssp HHHTCEEEEECCCGGGHH-HHHHHCSEEEECGGGTTC--------------------------HHHHHHHTTSSSCEEE-
T ss_pred HHcCCcEEEeeCCHHhHH-HHHhhCCEEEECcccccC--------------------------HHHHHHHHhcCCcEEE-
Confidence 567899999999988744 455669999999999966 2355666669999988
Q ss_pred eccCCCchHHHhhcC-C-CchHHHHHHHHHHHHHHHCCCCcEEEEE-------ecCChhHHHHHHHHHHHHhhcCCCCcc
Q 004907 221 TNHGSLSDRIMSYYG-D-SPRGMVESAFEFARICRKLDFHNFLFSM-------KASNPVVMVQAYRLLVAEMYVHGWDYP 291 (724)
Q Consensus 221 vN~GSL~~~il~~yg-~-t~~amVeSAle~~~i~e~~~F~diviS~-------KaSnv~~~v~Ayrlla~~m~~~g~dYP 291 (724)
+.| . |++.|..++ +++...|-.++.+=- +.+...+.+.++..|.+. +++|
T Consensus 136 ------------k~G~~~t~~e~~~Av----~~i~~~Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~~lk~~-----~~~p 194 (262)
T 1zco_A 136 ------------KRGMGNTIQELLYSA----EYIMAQGNENVILCERGIRTFETATRFTLDISAVPVVKEL-----SHLP 194 (262)
T ss_dssp ------------ECCTTCCHHHHHHHH----HHHHTTTCCCEEEEECCBCCSCCSSSSBCCTTHHHHHHHH-----BSSC
T ss_pred ------------ecCCCCCHHHHHHHH----HHHHHCCCCeEEEEECCCCCCCCcChhhcCHHHHHHHHhh-----hCCC
Confidence 345 3 666666655 667888888888744 333334456788889888 7999
Q ss_pred ccccccccCCCCC
Q 004907 292 LHLGVTEAGEGED 304 (724)
Q Consensus 292 LHLGVTEAG~~~~ 304 (724)
+|...|.++...+
T Consensus 195 Vi~d~sH~~g~~~ 207 (262)
T 1zco_A 195 IIVDPSHPAGRRS 207 (262)
T ss_dssp EEECSSTTTCSGG
T ss_pred EEEEcCCCCCccc
Confidence 9999999976554
No 6
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=98.47 E-value=1.5e-07 Score=105.60 Aligned_cols=123 Identities=20% Similarity=0.339 Sum_probs=93.6
Q ss_pred CCCeEEeeCC------CCChhhhhHHHHHHHHHhhccCC----cceeecCC---CCccccccHHH----HHHHHHHHhc-
Q 004907 589 LGDGLLLEAP------GQDFDFLRDTSFNLLQGCRMRNT----KTEYVSCP---SCGRTLFDLQE----ISAEIREKTS- 650 (724)
Q Consensus 589 iGDtIrvsl~------~~~~~~i~~v~~~ILQa~r~R~~----kte~ISCP---sCGRTlfDLq~----~~~~Ik~~t~- 650 (724)
.|..||++.. +.+.+.+ .-.+.+|+.+++... .+..++|| .|+....|-+. ++.++++.+.
T Consensus 386 ~gg~iRlT~~Qniil~gv~~e~l-~~i~~~L~~~Gl~~~~~~~~~~v~aC~G~~~C~~a~~dt~~~a~~L~~~le~~~~~ 464 (570)
T 4g38_A 386 HKGDFRITANQNLIIAGVPESEK-AKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAK 464 (570)
T ss_dssp CSSEEEECTTSCEEEEEEEGGGH-HHHHHHHHHTTTTCCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHHHH
T ss_pred hCCeEEECCCCcEEEecCCHHHH-HHHHHHHHHcCCCCCCCCcccCeEECCCCCcccchhHhHHHHHHHHHHHHHHHHhh
Confidence 3678888743 2333443 234678888887621 23678997 79999999665 6667776653
Q ss_pred -CC-C-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecce--------eeeecCChhHHHHHHHHHHHh
Q 004907 651 -HL-P-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKT--------VVKRGIAMEQATDALIQLIKD 713 (724)
Q Consensus 651 -hL-k-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke--------~V~~~Ipeeeavd~Li~lIk~ 713 (724)
.+ | .+||+|.||. |+-|+..-||+|++|.++|.+.||.|+. ++.+++|++|+++.|..+|+.
T Consensus 465 ~~l~p~~iki~vSGCp-n~C~~~~~aDIGlvG~~~g~y~l~lGG~~~~~r~g~~~~~~v~~~ei~~~l~~ll~~ 537 (570)
T 4g38_A 465 HGVSDEHIVMRVTGCP-NGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGR 537 (570)
T ss_dssp TTCTTCCCCEEEESST-TCTTCGGGSSEEEEEEETTEEEEEECCCTTSCSCCEEEEEEEEHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEeCCC-chhhhccccceEEEEecccceEEEECCcCCCcccchhhhcCCCHHHHHHHHHHHHHH
Confidence 35 5 6999999999 9999999999999998789999999874 456689999999988887763
No 7
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=98.20 E-value=1.3e-06 Score=96.01 Aligned_cols=124 Identities=19% Similarity=0.296 Sum_probs=89.6
Q ss_pred hcCCCeEEeeCCC------CChhhhhHHHHHHHHHhhccCC----cceeecCC---CCccccccHHH----HHHHHHHHh
Q 004907 587 DGLGDGLLLEAPG------QDFDFLRDTSFNLLQGCRMRNT----KTEYVSCP---SCGRTLFDLQE----ISAEIREKT 649 (724)
Q Consensus 587 DGiGDtIrvsl~~------~~~~~i~~v~~~ILQa~r~R~~----kte~ISCP---sCGRTlfDLq~----~~~~Ik~~t 649 (724)
+-.|..||++... .+.+.+ .-.+..|+..++... -...++|| .|+.-..|-+. ++.++++.+
T Consensus 311 ~~ygg~irlT~~qni~l~gv~~~~l-~~l~~~L~~~Gl~~~~~~~~r~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~~ 389 (497)
T 1aop_A 311 KIHKGDFRITANQNLIIAGVPESEK-AKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLM 389 (497)
T ss_dssp HHCSSEEEECTTSCEEEEEEEGGGH-HHHHHHHHHTTTTCCCCHHHHTEEECCCTTTCTTCSSCSTTTHHHHHHHHHHHH
T ss_pred HHhCCEEEEcCCCCEEEecCCHHHH-HHHHHHHHHCCCCCCCCCceeeeecccCcccCcchhhhHHHHHHHHHHHHHHHH
Confidence 3334567776432 223333 234567777777632 14679996 79988888665 666666665
Q ss_pred c--CC-C-CcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeeccee--------eeecCChhHHHHHHHHHHH
Q 004907 650 S--HL-P-GVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTV--------VKRGIAMEQATDALIQLIK 712 (724)
Q Consensus 650 ~--hL-k-gvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~--------V~~~Ipeeeavd~Li~lIk 712 (724)
. .+ | .+||+|.||. |+-|...-||+|++|..+|++++|.|+.. +...+|++++++.+.++++
T Consensus 390 ~~~~l~p~~~~i~vSGCp-n~C~~~~~aDIGi~G~~~g~y~i~lGG~~~~~~~g~~~~~~v~~~ei~~~l~~l~~ 463 (497)
T 1aop_A 390 AKHGVSDEHIVMRVTGCP-NGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIG 463 (497)
T ss_dssp HHTTCTTCCCCEEEESST-TCTTCGGGSSEEEEEEETTEEEEEECCCTTSCSCCEEEEEEEEHHHHHHHHHHHHH
T ss_pred hhcCCCCcceEEEEECCc-chhhhhccCCEEEEEecCCCEEEEECCCCCCcchhhhhhcCCCHHHHHHHHHHHHH
Confidence 3 34 5 7999999999 99999999999999987888999998754 4457999999998777775
No 8
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=97.98 E-value=7.9e-06 Score=91.40 Aligned_cols=103 Identities=15% Similarity=0.352 Sum_probs=77.5
Q ss_pred HHHHHHHhhccCCc----ceeecC---CCCccccccHH----HHHHHHHHHhcC----CC-CcEEEEeeeeecCCCCCCC
Q 004907 609 SFNLLQGCRMRNTK----TEYVSC---PSCGRTLFDLQ----EISAEIREKTSH----LP-GVSIAIMGCIVNGPGEMAD 672 (724)
Q Consensus 609 ~~~ILQa~r~R~~k----te~ISC---PsCGRTlfDLq----~~~~~Ik~~t~h----Lk-gvkIAVMGCIVNGPGEmad 672 (724)
.+..|...++.... ...++| |.|+.-++|-+ .++.++++++.. +| ++||+|.||. |+-|...-
T Consensus 405 i~~~L~~~Gl~~~~s~~~r~~~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~l~~~~~~~~~~~ki~vSGCp-N~Ca~~~~ 483 (566)
T 1zj8_A 405 LIAGLDALGLQSRPSHWRRNLMACSGIEFCKLSFAETRVRAQHLVPELERRLEDINSQLDVPITVNINGCP-NSCARIQI 483 (566)
T ss_dssp HHHHHHHTTCBSSCCHHHHHEEECCBTTTCTTCSSBCHHHHHHHHHHHHHHTHHHHTTCCSCCCEEEESST-TCTTCGGG
T ss_pred HHHHHHHcCCCCCCCCcccccccCCCcccCccchhhHHHHHHHHHHHHHHHhhccccccCCCceEEEecCC-ccchhhhh
Confidence 45667776776543 368999 78999999964 455666766533 56 7999999999 99999999
Q ss_pred CceeeecCCC--------ceeEeeecce---------eee-ecCChhHHHHHHHHHHH
Q 004907 673 ADFGYVGGAP--------GKIDLYVGKT---------VVK-RGIAMEQATDALIQLIK 712 (724)
Q Consensus 673 AD~GyvGg~p--------Gki~Ly~gke---------~V~-~~Ipeeeavd~Li~lIk 712 (724)
||+|++|..+ .++.+|.|+. ++. .++|++|+.+.+..+++
T Consensus 484 aDIGivG~~~~~~~g~~~~gy~i~lGG~~g~~~~~g~~l~~~~v~~eei~~~l~~l~~ 541 (566)
T 1zj8_A 484 ADIGFKGQMIDDGHGGSVEGFQVHLGGHLGLDAGFGRKLRQHKVTSDELGDYIDRVVR 541 (566)
T ss_dssp SSEEEEEEEEESSSSCEEEEEEEEESCBCSTTCBCCEECTTCCEETTTHHHHHHHHHH
T ss_pred cceeEEEEeccCCCCccceeEEEEeCCCCCCCCccccccccCCCCHHHHHHHHHHHHH
Confidence 9999999621 3589999875 332 36899999887776665
No 9
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*
Probab=97.44 E-value=0.00085 Score=72.37 Aligned_cols=130 Identities=12% Similarity=0.185 Sum_probs=99.0
Q ss_pred eeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------------------HHHHHHHHhhhcC
Q 004907 89 RTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------------------ACFEIKNSLVQKN 142 (724)
Q Consensus 89 r~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------------------a~~~I~~~L~~~~ 142 (724)
..|.||++.||+++|+.|.-++... |.+.+.+.+.++.+ .++.+++ .++.
T Consensus 129 t~i~i~~~~iG~~~~~~Iigpcsve--s~e~a~~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~egl~~L~~--~~~~ 204 (385)
T 3nvt_A 129 TIVTVKGLPIGNGEPVFVFGPCSVE--SYEQVAAVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGLEGLKILKR--VSDE 204 (385)
T ss_dssp CCEEETTEEETSSSCEEEEECSBCC--CHHHHHHHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHH--HHHH
T ss_pred cEEEECCEEECCCCeEEEEEeCCcC--CHHHHHHHHHHHHHcCCCeEEcccccCCCChHhhcCCCHHHHHHHHH--HHHH
Confidence 4699999999999999999999887 88999998888887 3445555 3556
Q ss_pred CCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 143 YNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 143 ~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
..+|++.|+|....+.+. ++.+|-+.|..+|+-+ .++++++.+.|.||-+-..
T Consensus 205 ~Gl~~~te~~d~~~~~~l-~~~vd~lkIgs~~~~n--------------------------~~LL~~~a~~gkPVilk~G 257 (385)
T 3nvt_A 205 YGLGVISEIVTPADIEVA-LDYVDVIQIGARNMQN--------------------------FELLKAAGRVDKPILLKRG 257 (385)
T ss_dssp HTCEEEEECCSGGGHHHH-TTTCSEEEECGGGTTC--------------------------HHHHHHHHTSSSCEEEECC
T ss_pred cCCEEEEecCCHHHHHHH-HhhCCEEEECcccccC--------------------------HHHHHHHHccCCcEEEecC
Confidence 789999999998877755 4679999999999965 2588889999999977653
Q ss_pred cCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 223 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 223 ~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
-. .|++.| +.|+ +.+.+.|-.+|++==
T Consensus 258 ~~-----------~t~~e~-~~Av---e~i~~~Gn~~i~L~~ 284 (385)
T 3nvt_A 258 LS-----------ATIEEF-IGAA---EYIMSQGNGKIILCE 284 (385)
T ss_dssp TT-----------CCHHHH-HHHH---HHHHTTTCCCEEEEE
T ss_pred CC-----------CCHHHH-HHHH---HHHHHcCCCeEEEEE
Confidence 30 233333 3333 346677877777644
No 10
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=96.88 E-value=0.0016 Score=73.89 Aligned_cols=89 Identities=22% Similarity=0.536 Sum_probs=71.7
Q ss_pred ceeecC---CCCccccccHHHHHHHHHHHhc---CCC-CcEEEEeeeeecCCCCCCCCceeeecCC----Cce----eEe
Q 004907 623 TEYVSC---PSCGRTLFDLQEISAEIREKTS---HLP-GVSIAIMGCIVNGPGEMADADFGYVGGA----PGK----IDL 687 (724)
Q Consensus 623 te~ISC---PsCGRTlfDLq~~~~~Ik~~t~---hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~----pGk----i~L 687 (724)
...++| |.|.-.++|-+..+..+.+++. ++| .+||+|-||. |+=|...-||+|++|.. .|+ +.+
T Consensus 482 r~i~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~~~lp~k~kI~vSGCp-n~Ca~~~iaDIGlvG~~~~~~~G~~~~gy~v 560 (608)
T 2akj_A 482 KGLVACTGSQFCGQAIIETKARALKVTEEVQRLVSVTRPVRMHWTGCP-NSCGQVQVADIGFMGCMTRDENGKPCEGADV 560 (608)
T ss_dssp TEEEECCGGGTCTTCSSCCHHHHHHHHHHHHHHEECSSCCEEEEESST-TCTTCGGGSSEEEEEEEEECTTCCEEEEEEE
T ss_pred cceeeCCCCCCCCchhhhHHHHHHHHHHHHHHhcCCCcceEEEEeCCC-CccccccccceEEEEEeeccCCCcccceEEE
Confidence 488999 5799999997776666655543 467 7999999997 99999999999999963 343 899
Q ss_pred eecce---------eeeecCChhHHHHHHHHHHH
Q 004907 688 YVGKT---------VVKRGIAMEQATDALIQLIK 712 (724)
Q Consensus 688 y~gke---------~V~~~Ipeeeavd~Li~lIk 712 (724)
|.|+. .+...||++|+.+.+..+++
T Consensus 561 ~lGG~~g~~~rlg~~l~~~v~~eev~~~l~~ll~ 594 (608)
T 2akj_A 561 FVGGRIGSDSHLGDIYKKAVPCKDLVPVVAEILI 594 (608)
T ss_dssp EECCBCSTTCBCCEEEEEEEETTTHHHHHHHHHH
T ss_pred EECCcCCCCCchhhHhhcCCCHHHHHHHHHHHHH
Confidence 99874 44557999999999999987
No 11
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=96.65 E-value=0.0026 Score=71.83 Aligned_cols=92 Identities=25% Similarity=0.531 Sum_probs=71.8
Q ss_pred eeecC---CCCccccccHHHHHHHHHHHhc---CCC-CcEEEEeeeeecCCCCCCCCceeeecCC----Cc----eeEee
Q 004907 624 EYVSC---PSCGRTLFDLQEISAEIREKTS---HLP-GVSIAIMGCIVNGPGEMADADFGYVGGA----PG----KIDLY 688 (724)
Q Consensus 624 e~ISC---PsCGRTlfDLq~~~~~Ik~~t~---hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~----pG----ki~Ly 688 (724)
..++| |.|.-.++|-+..+..+.+++. ++| .+||+|-||. |+=|...-||+|++|.. +| .+.+|
T Consensus 465 ~i~aC~G~~~C~~a~~dt~~~a~~l~~~l~~~~~lp~k~kI~iSGCp-n~C~~~~~aDIG~vG~~~~~~~G~~~~gy~v~ 543 (591)
T 3b0g_A 465 GLVACTGNQFCGQAIIETKARSLKITEEVQRQVSLTKPVRMHWTGCP-NTCAQVQVADIGFMGCLTRDKNGKTVEGADVF 543 (591)
T ss_dssp TCEECCGGGTCTTCSSCCHHHHHHHHHHHHHHEECCSCCCEEEESST-TCTTCGGGSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred ceecCCCcccCcchhhhHHHHHHHHHHHHHHhcCCCcceEEEEeCCC-CcccCcccccEEEEEEeecCCCCccccceEEE
Confidence 56799 5799999997776666655543 467 7999999997 99999999999999962 33 38999
Q ss_pred ecce---------eeeecCChhHHHHHHHHHHH-hccc
Q 004907 689 VGKT---------VVKRGIAMEQATDALIQLIK-DHGR 716 (724)
Q Consensus 689 ~gke---------~V~~~Ipeeeavd~Li~lIk-~~g~ 716 (724)
.|+. .+...||++|+.+.+..++. .++.
T Consensus 544 lGG~~g~~~rlg~~l~~~v~~eev~~~i~~ll~~~y~~ 581 (591)
T 3b0g_A 544 LGGRIGSDSHLGEVYKKAVPCDDLVPLVVDLLVNNFGA 581 (591)
T ss_dssp ECCBCSSSCBCCEEEEEEEEGGGHHHHHHHHHHHHSCC
T ss_pred ECCcCCCCCchhhHHhcCCCHHHHHHHHHHHHHHHHhh
Confidence 9873 34557999999999888887 4443
No 12
>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*
Probab=96.18 E-value=0.099 Score=57.67 Aligned_cols=139 Identities=9% Similarity=0.073 Sum_probs=97.0
Q ss_pred hcCCCcceeecCCCCHHHHHHHhhhcCccc--cCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 140 QKNYNIPLVADIHFAPSVALRVAECFDKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 140 ~~~~~iPLVADIHF~~~lAl~a~~~vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
++.+++||+=|- +|+.++.+|++.+...| ||.-+ +++++.+...|++||.|+
T Consensus 151 ~e~~dvPL~IDS-~dpevleaALea~a~~~plI~sat-------------------------~dn~e~m~~lAa~y~~pV 204 (446)
T 4djd_C 151 AAATQLNLVLMA-DDPDVLKEALAGVADRKPLLYAAT-------------------------GANYEAMTALAKENNCPL 204 (446)
T ss_dssp HTTCCSEEEEEC-SCHHHHHHHHGGGGGGCCEEEEEC-------------------------TTTHHHHHHHHHHTTCCE
T ss_pred HHhCCCCEEEec-CCHHHHHHHHHhhcCcCCeeEecc-------------------------hhhHHHHHHHHHHcCCcE
Confidence 346899999997 99999999999864433 55533 125778999999999999
Q ss_pred EEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHH---HHHhhcCCCCccccc
Q 004907 218 RIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL---VAEMYVHGWDYPLHL 294 (724)
Q Consensus 218 RIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrll---a~~m~~~g~dYPLHL 294 (724)
.+-| + +++.+.+.++++.++|++||++--=......+.+-+..+ |=+-......||+=+
T Consensus 205 --i~~~--------------~--dl~~lkelv~~a~~~GI~~IvLDPG~~g~~~t~~~~~~iRr~AL~~~d~~LgyPvi~ 266 (446)
T 4djd_C 205 --AVYG--------------N--GLEELAELVDKIVALGHKQLVLDPGARETSRAIADFTQIRRLAIKKRFRSFGYPIIA 266 (446)
T ss_dssp --EEEC--------------S--SHHHHHHHHHHHHHTTCCCEEEECCCCSHHHHHHHHHHHHHHHHHSCCGGGCSCBEE
T ss_pred --EEEe--------------c--cHHHHHHHHHHHHHCCCCcEEECCCchhHHHHHHHHHHHHHHhhhccCcccCCCEEe
Confidence 3321 1 667888899999999999999976554444444444443 322123346799999
Q ss_pred cccccCCCCCCchhhHHHHHHHhhcCCCceeEEe
Q 004907 295 GVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVS 328 (724)
Q Consensus 295 GVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVS 328 (724)
|+.. .+-+.-.+++ ..+++.| +|-+||+
T Consensus 267 ~~sr----~d~~~E~t~A-~~~i~kg-a~Iv~vh 294 (446)
T 4djd_C 267 LTTA----ANPLDEVLQA-VNYVTKY-ASLVVLR 294 (446)
T ss_dssp ECCC----SSHHHHHHHH-HHHHHTT-CSEEEES
T ss_pred ccCC----ccHHHHHHHH-HHHHHcC-CeEEEEc
Confidence 9977 4456666665 4444444 7888885
No 13
>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*
Probab=95.90 E-value=0.35 Score=53.21 Aligned_cols=135 Identities=11% Similarity=0.123 Sum_probs=94.5
Q ss_pred CCCcceeecCCCCHHHHHHHhhhc-C-ccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 142 NYNIPLVADIHFAPSVALRVAECF-D-KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 142 ~~~iPLVADIHF~~~lAl~a~~~v-d-kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
.+++||+-| +|++.+.+|++.+ + +-=||.=+- ++++++...|+++|.|+=+
T Consensus 153 ~~dvPlsID--~dp~vleaale~~~d~~pLIns~t~-------------------------en~~~~~~la~~y~~~vV~ 205 (445)
T 2h9a_A 153 VTDLPFILI--GTPEQLAAALETEGANNPLLYAATA-------------------------DNYEQMVELAKKYNVPLTV 205 (445)
T ss_dssp HCCSCEEEE--SCHHHHHHHHHHHGGGCCEEEEECT-------------------------TTHHHHHHHHHHHTCCEEE
T ss_pred hcCCCEEEE--CCHHHHHHHHHhcCCCCCEEEECCH-------------------------HHHHHHHHHHHHhCCeEEE
Confidence 579999999 9999999999984 3 233443221 1456789999999999833
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHh---hcCCCCccccccc
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM---YVHGWDYPLHLGV 296 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m---~~~g~dYPLHLGV 296 (724)
.+. + ++.+.+.++.+.++|+.||++.-=..+...+++.++++.+.- ...-+-||+=.++
T Consensus 206 ---~~~---~------------l~~l~~lv~~a~~~Gi~~IiLDP~~~~~~~sl~~~~~IR~~al~~~d~~lg~P~i~~v 267 (445)
T 2h9a_A 206 ---SAK---G------------LDALAELVQKITALGYKNLILDPQPENISEGLFYQTQIRRLAIKKLFRPFGYPTIAFA 267 (445)
T ss_dssp ---ECS---S------------HHHHHHHHHHHHHTTCCCEEEECCCSSHHHHHHHHHHHHHHHHHSCCGGGCSCBEEEC
T ss_pred ---EcC---C------------HHHHHHHHHHHHHCCCCcEEEcCCchhHHHHHHHHHHHHHhhhcCCCcccCCCeeecC
Confidence 221 1 677999999999999999998865556777888888777653 1223569999999
Q ss_pred cccCCCCCCchhhHHHHHHHhhcCCCceeEE
Q 004907 297 TEAGEGEDGRMKSAIGIGTLLQDGLGDTIRV 327 (724)
Q Consensus 297 TEAG~~~~G~IKSaiGiG~LL~~GIGDTIRV 327 (724)
||- +-++-.+.+ +.++..| +|-+|+
T Consensus 268 s~~----d~~~ea~lA-~~~~~~G-asIl~~ 292 (445)
T 2h9a_A 268 LDE----NPYQAVMEA-SVYIAKY-AGIIVL 292 (445)
T ss_dssp CCS----SHHHHHHHH-HHHHHTT-CSEEEE
T ss_pred Cch----hHHHHHHHH-HHHHHcC-CeEEEe
Confidence 998 333333332 2234444 566665
No 14
>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...
Probab=95.11 E-value=0.77 Score=48.00 Aligned_cols=150 Identities=17% Similarity=0.230 Sum_probs=96.4
Q ss_pred CCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 142 NYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 142 ~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
.+++||.-|- |++..|.+|+++ ++= ||--|-+..+ .++.+.|+++|.|+=+-
T Consensus 113 ~~~vpiSIDT-~~~~V~~aAl~aGa~i--INdvsg~~~d------------------------~~m~~~aa~~g~~vVlm 165 (297)
T 1tx2_A 113 EVKLPISIDT-YKAEVAKQAIEAGAHI--INDIWGAKAE------------------------PKIAEVAAHYDVPIILM 165 (297)
T ss_dssp HSCSCEEEEC-SCHHHHHHHHHHTCCE--EEETTTTSSC------------------------THHHHHHHHHTCCEEEE
T ss_pred cCCceEEEeC-CCHHHHHHHHHcCCCE--EEECCCCCCC------------------------HHHHHHHHHhCCcEEEE
Confidence 3589999998 689999999997 443 3544433211 24778889999999665
Q ss_pred eccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEEe---cCChhHHHHHHHHHHHHhhcCCCCcccccc
Q 004907 221 TNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH--NFLFSMK---ASNPVVMVQAYRLLVAEMYVHGWDYPLHLG 295 (724)
Q Consensus 221 vN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~--diviS~K---aSnv~~~v~Ayrlla~~m~~~g~dYPLHLG 295 (724)
-+.|- ++ |.+..+.+.+...+.++.|++.|+. +|+|--= +.+.. +.|.+|..--.=....||+=+|
T Consensus 166 h~~G~-p~-----y~d~v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gfgk~~~---~n~~ll~~l~~l~~lg~Pvl~G 236 (297)
T 1tx2_A 166 HNRDN-MN-----YRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPE---QNLEAMRNLEQLNVLGYPVLLG 236 (297)
T ss_dssp CCCSC-CC-----CSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHH---HHHHHHHTGGGGGGGCSCBEEE
T ss_pred eCCCC-CC-----cchHHHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCcCCCHH---HHHHHHHHHHHHHhCCCCEEEE
Confidence 55453 22 7777888999999999999999997 8998641 12222 2333222211111258999999
Q ss_pred cccc-------CCCCCCchhhHHHHHHHhhcCCCceeEE
Q 004907 296 VTEA-------GEGEDGRMKSAIGIGTLLQDGLGDTIRV 327 (724)
Q Consensus 296 VTEA-------G~~~~G~IKSaiGiG~LL~~GIGDTIRV 327 (724)
+.=- |....-++-.++....+...-=.+-|||
T Consensus 237 ~Srksfig~~~g~~~~~r~~~t~a~~~~a~~~ga~Ivrv 275 (297)
T 1tx2_A 237 TSRKSFIGHVLDLPVEERLEGTGATVCLGIEKGCEFVRV 275 (297)
T ss_dssp CTTCHHHHHHHTCCGGGCHHHHHHHHHHHHHTTCSEEEE
T ss_pred eccchhhhhhcCCCHHHhHHHHHHHHHHHHHCCCcEEEe
Confidence 9711 1223456665555544444333678887
No 15
>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}
Probab=94.77 E-value=0.51 Score=49.41 Aligned_cols=175 Identities=18% Similarity=0.202 Sum_probs=112.4
Q ss_pred eeecCCCCCeEEee-ccCCC----------CCCHHHHHHHHHHHHH-------------------HHHHHHHHhhh--cC
Q 004907 95 NVAIGSEHPIRVQT-MTTND----------TKDVAGTVEEVMRIAD-------------------ACFEIKNSLVQ--KN 142 (724)
Q Consensus 95 ~V~IGG~~PI~VQS-Mt~t~----------T~Dv~atv~Qi~~L~~-------------------a~~~I~~~L~~--~~ 142 (724)
+|.||.++|..+=- =+|.. ..|.+..+++.+++.+ .+.++...+.. +.
T Consensus 3 ~~~~~~~~~~~iIGEriNvTg~~sf~~~~~~~~~~~a~~~A~~~v~~GAdiIDIg~g~~~v~~~eem~rvv~~i~~~~~~ 82 (300)
T 3k13_A 3 ALEVKPEINFVNIGERCNVAGSRKFLRLVNEKKYDEALSIARQQVEDGALVIDVNMDDGLLDARTEMTTFLNLIMSEPEI 82 (300)
T ss_dssp ------CTTCEEEEEEEETTTCHHHHHHHHTTCHHHHHHHHHHHHHTTCSEEEEECCCTTSCHHHHHHHHHHHHHTCHHH
T ss_pred ceeeCCCCCcEEEEEeccCCCCHHHHHHHhcCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhhhc
Confidence 35666666554433 23333 2588899999888877 23333332221 24
Q ss_pred CCcceeecCCCCHHHHHHHhhhc-CccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 143 YNIPLVADIHFAPSVALRVAECF-DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 143 ~~iPLVADIHF~~~lAl~a~~~v-dkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
.++||.-|- |++..+.+|++++ .+-=||-=|-+.. +++|..+...|+++|.|+=+-.
T Consensus 83 ~~vpisIDT-~~~~V~eaaL~~~~Ga~iINdIs~~~~---------------------d~~~~~~~~l~a~~ga~vV~mh 140 (300)
T 3k13_A 83 ARVPVMIDS-SKWEVIEAGLKCLQGKSIVNSISLKEG---------------------EEVFLEHARIIKQYGAATVVMA 140 (300)
T ss_dssp HTSCEEEEC-SCHHHHHHHHHHCSSCCEEEEECSTTC---------------------HHHHHHHHHHHHHHTCEEEEES
T ss_pred CCCeEEEeC-CCHHHHHHHHHhcCCCCEEEeCCcccC---------------------ChhHHHHHHHHHHhCCeEEEEe
Confidence 689999998 8999999999964 3323665554432 2347788999999999984433
Q ss_pred c--cCCCchHHHhhcCCCchHHHHHHHHHHHHH-HHCCC--CcEEEE-----EecC-C-----hhHHHHHHHHHHHHhhc
Q 004907 222 N--HGSLSDRIMSYYGDSPRGMVESAFEFARIC-RKLDF--HNFLFS-----MKAS-N-----PVVMVQAYRLLVAEMYV 285 (724)
Q Consensus 222 N--~GSL~~~il~~yg~t~~amVeSAle~~~i~-e~~~F--~diviS-----~KaS-n-----v~~~v~Ayrlla~~m~~ 285 (724)
+ .| .+ .|.+.-++-|.+..+.| ++.|+ ++|+|- ...+ . -..++++++.|.+.
T Consensus 141 ~d~~G-~p--------~t~~~~~~i~~r~~~~~~~~~Gi~~~~IilDPgig~~gk~~~~~~~~~~~~l~~l~~lk~~--- 208 (300)
T 3k13_A 141 FDEKG-QA--------DTAARKIEVCERAYRLLVDKVGFNPHDIIFDPNVLAVATGIEEHNNYAVDFIEATGWIRKN--- 208 (300)
T ss_dssp EETTE-EC--------CSHHHHHHHHHHHHHHHHHHTCCCGGGEEEECCCCCCSSSCGGGTTHHHHHHHHHHHHHHH---
T ss_pred eCCCC-CC--------CCHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCccCCChHHhhHHHHHHHHHHHHHHHh---
Confidence 2 11 11 24556677788888887 99999 788873 2222 1 34689999999877
Q ss_pred CCC-CccccccccccCCCCCC
Q 004907 286 HGW-DYPLHLGVTEAGEGEDG 305 (724)
Q Consensus 286 ~g~-dYPLHLGVTEAG~~~~G 305 (724)
+ .||+=+|+.==..|..|
T Consensus 209 --lPg~pvl~G~SnkSfglp~ 227 (300)
T 3k13_A 209 --LPGAHVSGGVSNLSFSFRG 227 (300)
T ss_dssp --STTCEECCBGGGGGGGGTT
T ss_pred --CCCCCEEEEECcccccCCC
Confidence 7 89999999866665554
No 16
>1aop_A Sirhp, sulfite reductase hemoprotein; oxidoreductase, siroheme, [4Fe-4S], snirr, six-electron REDU phosphate complex; HET: SRM; 1.60A {Escherichia coli} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=93.69 E-value=0.15 Score=56.14 Aligned_cols=93 Identities=17% Similarity=0.218 Sum_probs=64.9
Q ss_pred eeecCCCCccc--cccHHHHHHHHHHHhc----------------------------CCC-CcEEEEeeeeecCCCCCCC
Q 004907 624 EYVSCPSCGRT--LFDLQEISAEIREKTS----------------------------HLP-GVSIAIMGCIVNGPGEMAD 672 (724)
Q Consensus 624 e~ISCPsCGRT--lfDLq~~~~~Ik~~t~----------------------------hLk-gvkIAVMGCIVNGPGEmad 672 (724)
+.++||.-++. .+|.++++.++...+. .|| -.||||-||--|- ....-
T Consensus 81 ni~~~p~~~~~~~~~d~~~~a~~l~~~l~~~~~~~~e~wl~~~~~~~~~~~p~~~~~~LP~Kfkiavsg~~~~~-~~~~~ 159 (497)
T 1aop_A 81 NVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQND-IDLHA 159 (497)
T ss_dssp CCEECSSCSSTTHHHHHHHHHHHHHHHTCC--------------------------CCCSSCBCEEEECTTBCT-TCGGG
T ss_pred CcccCCcccCChhHHHHHHHHHHHHHHhhhccchhhhhhccccccccccCCcccccCCCCCcEEEEEecCCccc-cCccc
Confidence 77889853344 4889999999987763 277 6899999997554 44568
Q ss_pred CceeeecCC-Cc---eeEeeeccee----------------eeecCChhHHHHH---HHHHHHhccccC
Q 004907 673 ADFGYVGGA-PG---KIDLYVGKTV----------------VKRGIAMEQATDA---LIQLIKDHGRWA 718 (724)
Q Consensus 673 AD~GyvGg~-pG---ki~Ly~gke~----------------V~~~Ipeeeavd~---Li~lIk~~g~W~ 718 (724)
+|+|+++.. +| .+.+|.|+.. +. -||.+|+++- +++.-+++|+-.
T Consensus 160 ~Dig~i~~~~~g~~~G~~v~vGG~~g~~~~~~~~~p~~~~~~~-~v~~~~~~~~~~ai~~~~~~~g~r~ 227 (497)
T 1aop_A 160 NDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFG-YLPLEHTLAVAEAVVTTQRDWGNRT 227 (497)
T ss_dssp SSEEEEEEEETTEEEEEEEEECCBCCCCTTCTTCCCBCCEEEE-EEEGGGHHHHHHHHHHHHHHHSCSS
T ss_pred CCeEEEEEEECCceeeEEEEecccccccCCcccCCCccccccC-CcCHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999852 33 3889997653 22 4788887764 455555677543
No 17
>1zj8_A Probable ferredoxin-dependent nitrite reductase N; NIRA, sulfite, siroheme, Fe4-S4, Cys-Tyr bond, structural proteomics in europe; HET: SRM; 2.80A {Mycobacterium tuberculosis} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1 PDB: 1zj9_A*
Probab=93.42 E-value=0.22 Score=55.85 Aligned_cols=89 Identities=21% Similarity=0.307 Sum_probs=64.5
Q ss_pred eeecCCCCcc---ccccHHHHHHHHHHHhc------CCC-CcEEEEeeeeecCCCCCCCCceeeecC----CCceeEeee
Q 004907 624 EYVSCPSCGR---TLFDLQEISAEIREKTS------HLP-GVSIAIMGCIVNGPGEMADADFGYVGG----APGKIDLYV 689 (724)
Q Consensus 624 e~ISCPsCGR---TlfDLq~~~~~Ik~~t~------hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg----~pGki~Ly~ 689 (724)
+.++||..|+ -++|...++.++...+. .|| -.||||-||- |.. ..-+|+|++|. ....+.+|.
T Consensus 178 nv~~~p~~~~~~~~~~D~~~~~~~l~~~~~~~~~~~~LP~KfKiavsgc~-~~~--~~~~Dig~i~~~~~~~~~G~~v~v 254 (566)
T 1zj8_A 178 VVLGSPLAGESLDEVLDPTWAIEEIVRRYIGKPDFADLPRKYKTAISGLQ-DVA--HEINDVAFIGVNHPEHGPGLDLWV 254 (566)
T ss_dssp EEEECTTTTTCTTCSCCTHHHHHHHHHHHTTSGGGSSCSSCEEEEEESSS-CSC--GGGSSEEEEEEEETTTEEEEEEEE
T ss_pred CeecCcccccCcccccCcHHHHHHHHHHHcCCcccccCCcceEEEEeccC-Ccc--cccCcEEEEEEEecCCCceEEEEE
Confidence 7889998554 57888889888887663 377 6899999993 433 34799999984 133478999
Q ss_pred cce---------eeeecCChhHHHHHHHHH---HHhcc
Q 004907 690 GKT---------VVKRGIAMEQATDALIQL---IKDHG 715 (724)
Q Consensus 690 gke---------~V~~~Ipeeeavd~Li~l---Ik~~g 715 (724)
|+. .+..-||.+++++-+..+ -+++|
T Consensus 255 GG~~g~~p~~a~~l~~~v~~e~v~~~~~ai~~~~~~~G 292 (566)
T 1zj8_A 255 GGGLSTNPMLAQRVGAWVPLGEVPEVWAAVTSVFRDYG 292 (566)
T ss_dssp CCBCSSSCBCCEEEEEEECGGGHHHHHHHHHHHHHHHS
T ss_pred cccCCCCCcchhhhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 875 444468999988754444 44666
No 18
>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*
Probab=93.24 E-value=1.5 Score=45.07 Aligned_cols=189 Identities=15% Similarity=0.083 Sum_probs=119.0
Q ss_pred eeecCCCCCeEEeeccCCCC---------CCHHHHHHHHHHHHH-------------------HHHHHHHHhhhcCCCcc
Q 004907 95 NVAIGSEHPIRVQTMTTNDT---------KDVAGTVEEVMRIAD-------------------ACFEIKNSLVQKNYNIP 146 (724)
Q Consensus 95 ~V~IGG~~PI~VQSMt~t~T---------~Dv~atv~Qi~~L~~-------------------a~~~I~~~L~~~~~~iP 146 (724)
-|+.|...|+.|===.|... .|.++.+++.+++.+ .+..+.+.| ++.+++|
T Consensus 2 ~~~~~~~~~~iigEilN~Tpdsf~dg~~~~~~~~a~~~a~~~v~~GAdiIDIg~~s~~~eE~~rv~~vi~~l-~~~~~~p 80 (271)
T 2yci_X 2 LVPRGSHMFIMIGERINGMFKDIREAILNKDPRPIQEWARRQAEKGAHYLDVNTGPTADDPVRVMEWLVKTI-QEVVDLP 80 (271)
T ss_dssp CSCSCCCCCEEEEEEEETTSHHHHHHHHTTCCHHHHHHHHHHHHTTCSEEEEECCSCSSCHHHHHHHHHHHH-HHHCCCC
T ss_pred CCCCCCCCCEEEEEecCCChhhHHHhhhhCCHHHHHHHHHHHHHCCCCEEEEcCCcCchhHHHHHHHHHHHH-HHhCCCe
Confidence 35566666665543344332 378888888888887 122222222 2346899
Q ss_pred eeecCCCCHHHHHHHhhhcCccc-cCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCC
Q 004907 147 LVADIHFAPSVALRVAECFDKIR-VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 225 (724)
Q Consensus 147 LVADIHF~~~lAl~a~~~vdkiR-INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 225 (724)
|.-|- |++..+.+|+++++..- ||--|-.. +++.++...|+++|.|+=+--+
T Consensus 81 isIDT-~~~~v~~aal~a~~Ga~iINdvs~~~-----------------------d~~~~~~~~~a~~~~~vv~m~~--- 133 (271)
T 2yci_X 81 CCLDS-TNPDAIEAGLKVHRGHAMINSTSADQ-----------------------WKMDIFFPMAKKYEAAIIGLTM--- 133 (271)
T ss_dssp EEEEC-SCHHHHHHHHHHCCSCCEEEEECSCH-----------------------HHHHHHHHHHHHHTCEEEEESC---
T ss_pred EEEeC-CCHHHHHHHHHhCCCCCEEEECCCCc-----------------------cccHHHHHHHHHcCCCEEEEec---
Confidence 99997 58999999999864322 55444321 2466788999999998833221
Q ss_pred CchHHHhhcC--CCchHHHHHHHHHHHHHHHCCCC--cEEEEEe----cCCh---hHHHHHHHHHHHHhhcCC-CCcccc
Q 004907 226 LSDRIMSYYG--DSPRGMVESAFEFARICRKLDFH--NFLFSMK----ASNP---VVMVQAYRLLVAEMYVHG-WDYPLH 293 (724)
Q Consensus 226 L~~~il~~yg--~t~~amVeSAle~~~i~e~~~F~--diviS~K----aSnv---~~~v~Ayrlla~~m~~~g-~dYPLH 293 (724)
+++ | .|.+..++.+.+.++.|++.|+. +|++--= +.+. ..++++++.|.+. + -.||+=
T Consensus 134 -d~~-----G~p~t~~~~~~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~~~~l~~l~~~~~~----~~p~~p~l 203 (271)
T 2yci_X 134 -NEK-----GVPKDANDRSQLAMELVANADAHGIPMTELYIDPLILPVNVAQEHAVEVLETIRQIKLM----ANPAPRTV 203 (271)
T ss_dssp -BTT-----BCCCSHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHHHHHHHHHHHHTTS----SSSCCEEE
T ss_pred -CCC-----CCCCCHHHHHHHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHHHHHHHHHHHHHHh----CCCCCCEE
Confidence 111 2 25688899999999999999996 5887532 2222 3567777777543 1 259999
Q ss_pred ccccccCCCC--CCchhhHHHHHHHhhcCCC
Q 004907 294 LGVTEAGEGE--DGRMKSAIGIGTLLQDGLG 322 (724)
Q Consensus 294 LGVTEAG~~~--~G~IKSaiGiG~LL~~GIG 322 (724)
+|+.=-..|. ..++. +.-....+.-|.|
T Consensus 204 ~G~Snksfg~~~r~~l~-~t~~~~a~~~g~~ 233 (271)
T 2yci_X 204 LGLSNVSQKCPDRPLIN-RTYLVMAMTAGLD 233 (271)
T ss_dssp EEGGGGGTTCSSHHHHH-HHHHHHHHHHTCC
T ss_pred EeeCccccCCchHHHHH-HHHHHHHHHHhCC
Confidence 9997655543 23342 3344555666765
No 19
>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1
Probab=93.18 E-value=3.9 Score=42.29 Aligned_cols=149 Identities=16% Similarity=0.110 Sum_probs=95.0
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
++||.-|- |++..|.+|+++ ++= ||=-|-+..+ .++.+.|+++|.|+=+--+
T Consensus 80 ~~piSIDT-~~~~va~aAl~aGa~i--INdvsg~~~d------------------------~~m~~~~a~~~~~vVlmh~ 132 (280)
T 1eye_A 80 GITVSIDT-MRADVARAALQNGAQM--VNDVSGGRAD------------------------PAMGPLLAEADVPWVLMHW 132 (280)
T ss_dssp TCCEEEEC-SCHHHHHHHHHTTCCE--EEETTTTSSC------------------------TTHHHHHHHHTCCEEEECC
T ss_pred CCEEEEeC-CCHHHHHHHHHcCCCE--EEECCCCCCC------------------------HHHHHHHHHhCCeEEEEcC
Confidence 89999997 789999999997 433 4433322111 1367888999999865555
Q ss_pred cCCCchHHHh---hcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEEe---cCCh---hHHHHHHHHHHHHhhcCCCCcc
Q 004907 223 HGSLSDRIMS---YYGDSPRGMVESAFEFARICRKLDFH--NFLFSMK---ASNP---VVMVQAYRLLVAEMYVHGWDYP 291 (724)
Q Consensus 223 ~GSL~~~il~---~yg~t~~amVeSAle~~~i~e~~~F~--diviS~K---aSnv---~~~v~Ayrlla~~m~~~g~dYP 291 (724)
.|- ++.+-. .|.+-.+.+.+...+.++.|++.|+. +|+|--= +.+. ..+++.++.|.+ ..||
T Consensus 133 ~G~-p~tm~~~~~~y~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~Gf~k~~~~n~~ll~~l~~~~~------~g~P 205 (280)
T 1eye_A 133 RAV-SADTPHVPVRYGNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVA------TGIP 205 (280)
T ss_dssp CCS-CTTCTTSCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHHT------TSSC
T ss_pred CCC-CcchhhcCcchhHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCCCcccCHHHHHHHHHHHHHhhc------CCCC
Confidence 442 333322 25554566788888999999999997 8998531 1122 233444444432 5899
Q ss_pred cccccccc-----------C--CCCCCchh-hHHHHHHHhhcCCCceeEE
Q 004907 292 LHLGVTEA-----------G--EGEDGRMK-SAIGIGTLLQDGLGDTIRV 327 (724)
Q Consensus 292 LHLGVTEA-----------G--~~~~G~IK-SaiGiG~LL~~GIGDTIRV 327 (724)
+=+|+.-= | ...+-|.- |++-....+..|. +-|||
T Consensus 206 vl~G~Srksfi~~~~~~~~g~~~~~~~R~~~t~a~~~~a~~~Ga-~Ivrv 254 (280)
T 1eye_A 206 VLVGASRKRFLGALLAGPDGVMRPTDGRDTATAVISALAALHGA-WGVRV 254 (280)
T ss_dssp BEECCTTCHHHHHHTCCSSSCCCCGGGGHHHHHHHHHHHHHTTC-SEEEE
T ss_pred EEEEecchHHHHhhhccccCCCCCcccchHHHHHHHHHHHHcCC-CEEEe
Confidence 99998652 2 11222544 5566666777784 77775
No 20
>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*
Probab=92.76 E-value=5.4 Score=40.52 Aligned_cols=188 Identities=21% Similarity=0.241 Sum_probs=102.4
Q ss_pred ceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHH---HHhhhcCCCcce
Q 004907 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIK---NSLVQKNYNIPL 147 (724)
Q Consensus 88 Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~---~~L~~~~~~iPL 147 (724)
++.|.|+++.||.|.|-.+=+-+-+ +++..++|+.++.. ....+. ..|+..-.++|+
T Consensus 5 ~~~v~v~~~~ig~g~PkIcvpl~~~---t~~e~l~~a~~~~~~~aD~vElR~D~l~~~~~~~~v~~~l~~lr~~~~~lPi 81 (258)
T 4h3d_A 5 KRKVQVKNITIGEGRPKICVPIIGK---NKKDIIKEAKELKDACLDIIEWRVDFFENVENIKEVKEVLYELRSYIHDIPL 81 (258)
T ss_dssp CCCEEETTEEETSSSCEEEEEECCS---SHHHHHHHHHHHTTSSCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCTTSCE
T ss_pred cceEEEcCEEeCCCCCEEEEEeCCC---CHHHHHHHHHHHhhcCCCEEEEeeccccccCCHHHHHHHHHHHHHhcCCCCE
Confidence 4679999999999999777777654 45666666666544 111222 222233345666
Q ss_pred eecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhh----------------hhhhHHHHHHHHH
Q 004907 148 VADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQH----------------IEEVFSPLVEKCK 211 (724)
Q Consensus 148 VADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~----------------I~e~~~~vv~~ak 211 (724)
+.=+-=. -.-|.+ ..++++|.+-+++ -++.+..+++.++
T Consensus 82 I~T~Rt~---------------~EGG~~----------~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~ 136 (258)
T 4h3d_A 82 LFTFRSV---------------VEGGEK----------LISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAH 136 (258)
T ss_dssp EEECCCG---------------GGTCSC----------CCCHHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHH
T ss_pred EEEEech---------------hhCCCC----------CCCHHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHH
Confidence 6432100 011111 0112222222221 1345678999999
Q ss_pred hcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcc
Q 004907 212 KYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYP 291 (724)
Q Consensus 212 e~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYP 291 (724)
+.|+.| |.-+|= |..||.. +.-.+.++-+.+.|-+=++|-..+.+..+..+-.+.. .+|.+...+.|
T Consensus 137 ~~~~ki-I~S~Hd---------f~~TP~~--~el~~~~~~~~~~gaDIvKia~~~~~~~D~l~Ll~~~-~~~~~~~~~~P 203 (258)
T 4h3d_A 137 KKEVKV-IISNHD---------FNKTPKK--EEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEAT-NEMFKIYADRP 203 (258)
T ss_dssp HTTCEE-EEEEEE---------SSCCCCH--HHHHHHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHH-HHHHHHTCSSC
T ss_pred hCCCEE-EEEEec---------CCCCCCH--HHHHHHHHHHHHhCCCEEEEEEccCCHHHHHHHHHHH-HHHHHhcCCCC
Confidence 999877 665551 2235521 2334566777888988889999988877654433322 22222234677
Q ss_pred ccccccccCCCCCCchhhHHH--HHHHhhcC
Q 004907 292 LHLGVTEAGEGEDGRMKSAIG--IGTLLQDG 320 (724)
Q Consensus 292 LHLGVTEAG~~~~G~IKSaiG--iG~LL~~G 320 (724)
+ ++ =++|..|.+--..| +|+-+.-|
T Consensus 204 ~-I~---~~MG~~G~~SRi~~~~fGS~lTf~ 230 (258)
T 4h3d_A 204 I-IT---MSMSGMGVISRLCGEIFGSALTFG 230 (258)
T ss_dssp B-EE---EECTGGGGGGGTCHHHHCBCEEEC
T ss_pred E-EE---EeCCCCChHHHHHHHHhCCceEec
Confidence 6 22 35677777654443 44444443
No 21
>3b0g_A NII3, nitrite reductase; siroheme, Fe4S4 binding protein, oxidoreductase; HET: SRM; 1.25A {Nicotiana tabacum} PDB: 3vkp_A* 3vkq_A* 3vkr_A* 3vks_A* 3vkt_A* 3b0n_A* 3b0m_A* 3b0j_A* 3b0l_A* 3b0h_A*
Probab=92.51 E-value=0.18 Score=57.02 Aligned_cols=92 Identities=15% Similarity=0.214 Sum_probs=64.7
Q ss_pred eeecCCCCc---cccccHHHHHHHHHHHhc----------CCC-CcEEEEeeeeecCCCCCCCCceeeecCC---CceeE
Q 004907 624 EYVSCPSCG---RTLFDLQEISAEIREKTS----------HLP-GVSIAIMGCIVNGPGEMADADFGYVGGA---PGKID 686 (724)
Q Consensus 624 e~ISCPsCG---RTlfDLq~~~~~Ik~~t~----------hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~---pGki~ 686 (724)
+.++||..| .-.+|.+.++.++.+.+. .|| -.||||-||--| -....-+|+|+++.. ..++.
T Consensus 209 nv~~~p~~g~c~~~~~D~~~~a~~l~~~l~~~~~~~~~~~~LPrKfKiavsgc~~~-c~~~~~~Dig~i~~~~~g~~Gf~ 287 (591)
T 3b0g_A 209 NPVGNPLAGIDPEEIVDTRPYTNLLSQFITGNSRGNPAVSNLPRKWNPCVVGSHDL-YEHPHINDLAYMPATKDGRFGFN 287 (591)
T ss_dssp CCBCCTTTTTCTTCSSCCHHHHHHHHHHHHTTTTCCGGGSCCSSCBCEEECCCTTC-TTCGGGSSEEEEEEEETTEEEEE
T ss_pred CeEeCCCcccCcchhhhHHHHHHHHHHHHhhcccCCccccccCcceEEEEccCccc-ccccccceEEEEEEEcCCCceEE
Confidence 778999854 557899999999988763 377 689999999743 345567899999852 13478
Q ss_pred eeecceeee----------ecCChhHHHHH---HHHHHHhccc
Q 004907 687 LYVGKTVVK----------RGIAMEQATDA---LIQLIKDHGR 716 (724)
Q Consensus 687 Ly~gke~V~----------~~Ipeeeavd~---Li~lIk~~g~ 716 (724)
+|.|+..-. .-||.+++++- +++.-+++|+
T Consensus 288 v~vGG~~g~~~~~~~~~l~~~v~~e~v~~~~~ai~~~~~~~G~ 330 (591)
T 3b0g_A 288 LLVGGFFSAKRCDEAIPLDAWVPADDVVPVCRAILEAFRDLGF 330 (591)
T ss_dssp EEECCEECSSCEECCEEEEEEEEGGGHHHHHHHHHHHHHHHCC
T ss_pred EEEccccCCCCcccceeeccccCHHHHHHHHHHHHHHHHHhcc
Confidence 888863321 23678888775 4444556665
No 22
>2akj_A Ferredoxin--nitrite reductase, chloroplast; X-RAY crystallography, heme, electron transport, oxidoreductase; HET: SRM; 2.80A {Spinacia oleracea} SCOP: d.58.36.1 d.58.36.1 d.134.1.1 d.134.1.1
Probab=92.34 E-value=0.29 Score=55.56 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=65.0
Q ss_pred eeecCCC---CccccccHHHHHHHHHHHhc----------CCC-CcEEEEeeeeecCCCCCCCCceeeecCC-C--ceeE
Q 004907 624 EYVSCPS---CGRTLFDLQEISAEIREKTS----------HLP-GVSIAIMGCIVNGPGEMADADFGYVGGA-P--GKID 686 (724)
Q Consensus 624 e~ISCPs---CGRTlfDLq~~~~~Ik~~t~----------hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg~-p--Gki~ 686 (724)
+.++||. |..-.+|.+.++.++.+.+. .|| -.||||-||--| -....-+|+|+++.. . ..+.
T Consensus 226 nv~~~p~~g~c~~~~~D~~~~a~~l~~~l~~~~~~~~~~~~LPrKfKiavsgc~~~-c~~~~~~Dig~i~~~~~g~~Gf~ 304 (608)
T 2akj_A 226 NPVGNPLAGIDPHEIVDTRPFTNLISQFVTANSRGNLSITNLPRKWNPCVIGSHDL-YEHPHINDLAYMPATKNGKFGFN 304 (608)
T ss_dssp CCBCCTTTTTCTTCSSCCHHHHHHHHHHHTTTTTCCGGGSCCSSCBCEEECCCTTC-TTCGGGSSEEEEEEESSSSEEEE
T ss_pred CeEeCCCcccCcchhhhHHHHHHHHHHHHhhcccCCccccccCcceEEEeccCccc-ccccccceEEEEEEEeCCccEEE
Confidence 7789997 55567899999999998763 377 689999999743 355567899999852 2 3478
Q ss_pred eeecceee----------eecCChhHHHHH---HHHHHHhccc
Q 004907 687 LYVGKTVV----------KRGIAMEQATDA---LIQLIKDHGR 716 (724)
Q Consensus 687 Ly~gke~V----------~~~Ipeeeavd~---Li~lIk~~g~ 716 (724)
+|+|+..- ..-||.+++++- +++.-+++|+
T Consensus 305 v~vGGg~g~~~~~~~~~l~~~v~~eev~~~~~ai~~~~~~~G~ 347 (608)
T 2akj_A 305 LLVGGFFSIKRCEEAIPLDAWVSAEDVVPVCKAMLEAFRDLGF 347 (608)
T ss_dssp EEECCEECSSCEECCEEEEEEEEGGGHHHHHHHHHHHHHHHCC
T ss_pred EEECcccCCCCcccceecccccCHHHHHHHHHHHHHHHHHhCC
Confidence 99987332 123678888775 4444456664
No 23
>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}
Probab=91.95 E-value=3.6 Score=43.49 Aligned_cols=179 Identities=16% Similarity=0.190 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHH---------------H-----HHHH------HHHhhhcCC-CcceeecCCCCHHHHHHHhhh-cC
Q 004907 115 KDVAGTVEEVMRIAD---------------A-----CFEI------KNSLVQKNY-NIPLVADIHFAPSVALRVAEC-FD 166 (724)
Q Consensus 115 ~Dv~atv~Qi~~L~~---------------a-----~~~I------~~~L~~~~~-~iPLVADIHF~~~lAl~a~~~-vd 166 (724)
.|.++.+++..++.+ . -+++ .+.| ++.+ ++||.-|- |++..|.+|+++ ++
T Consensus 62 ~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l-~~~~~~vpISIDT-~~~~VaeaAl~aGa~ 139 (318)
T 2vp8_A 62 FSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWL-RGAYPDQLISVDT-WRAQVAKAACAAGAD 139 (318)
T ss_dssp --CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHH-HHHSTTCEEEEEC-SCHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHH-HhhCCCCeEEEeC-CCHHHHHHHHHhCCC
Confidence 477888888888887 1 1111 1222 2334 79999986 789999999997 44
Q ss_pred ccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHh--hcCCCc----hH
Q 004907 167 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMS--YYGDSP----RG 240 (724)
Q Consensus 167 kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~--~yg~t~----~a 240 (724)
= ||==+-+. + .++.+.|+++|.|+=+--+.|-.++.+-+ .|.+++ +.
T Consensus 140 i--INDVsg~~-d------------------------~~m~~vaa~~g~~vVlmh~~G~~p~tmq~~~~y~~~~~dv~~e 192 (318)
T 2vp8_A 140 L--INDTWGGV-D------------------------PAMPEVAAEFGAGLVCAHTGGALPRTRPFRVSYGTTTRGVVDA 192 (318)
T ss_dssp E--EEETTSSS-S------------------------TTHHHHHHHHTCEEEEECC-------------CCSCHHHHHHH
T ss_pred E--EEECCCCC-c------------------------hHHHHHHHHhCCCEEEECCCCCCccccccccccccccccHHHH
Confidence 2 33222111 1 13678889999998554443432333222 242222 44
Q ss_pred HHHHHHHHHHHHHHCCCC--cEEEE-----EecC-ChhHHHHHHHHHHHHhhcCCCCcccccccccc-------CCCCCC
Q 004907 241 MVESAFEFARICRKLDFH--NFLFS-----MKAS-NPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEA-------GEGEDG 305 (724)
Q Consensus 241 mVeSAle~~~i~e~~~F~--diviS-----~KaS-nv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEA-------G~~~~G 305 (724)
+.+...+.++.|++.|+. +|+|- .|.. .-..+++.++.|. . ..||+=+|+.-= |....-
T Consensus 193 v~~~l~~~i~~a~~aGI~~~~IilDPG~GF~Kt~~~nl~ll~~l~~l~-~-----lg~PvL~G~SrKsfig~~~g~~~~~ 266 (318)
T 2vp8_A 193 VISQVTAAAERAVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLV-M-----TGWPVLMALSNKDVVGETLGVDLTE 266 (318)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEETTTTCCTTSHHHHHHHHTHHHHH-T-----TSSCBEECCC---------------
T ss_pred HHHHHHHHHHHHHHcCCChhhEEEcCCCCcccCHHHHHHHHHHHHHHH-h-----CCCCEEEEeCcchhhhhhcCCChHH
Confidence 456667778999999996 89874 3422 1123344444443 2 589999999733 223345
Q ss_pred chhhHHHHHHHhhcCCCceeEEe
Q 004907 306 RMKSAIGIGTLLQDGLGDTIRVS 328 (724)
Q Consensus 306 ~IKSaiGiG~LL~~GIGDTIRVS 328 (724)
++-.++.+..+....=.+-|||.
T Consensus 267 r~~~t~a~~~~a~~~Ga~IvRvH 289 (318)
T 2vp8_A 267 RLEGTLAATALAAAAGARMFRVH 289 (318)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEES
T ss_pred hHHHHHHHHHHHHHCCCeEEEcC
Confidence 66655555444443336777763
No 24
>4g38_A SIR-HP, sirhp, sulfite reductase [NADPH] hemoprotein beta-compon; snirr, oxidoreductase, sulfite reductase flavoprotein; HET: SRM; 1.56A {Escherichia coli} PDB: 4g39_A* 1aop_A* 2aop_A* 2gep_A* 3aop_A* 3geo_A* 4aop_A* 4gep_A* 5aop_A* 5gep_A* 6gep_A* 7gep_A* 8gep_A*
Probab=91.81 E-value=0.37 Score=54.30 Aligned_cols=93 Identities=18% Similarity=0.239 Sum_probs=61.9
Q ss_pred eeecCC--CCccccccHHHHHHHHHHHh----------------------------cCCC-CcEEEEeeeeecCCCCCCC
Q 004907 624 EYVSCP--SCGRTLFDLQEISAEIREKT----------------------------SHLP-GVSIAIMGCIVNGPGEMAD 672 (724)
Q Consensus 624 e~ISCP--sCGRTlfDLq~~~~~Ik~~t----------------------------~hLk-gvkIAVMGCIVNGPGEmad 672 (724)
+.++|| -||....|.++++++|.+.+ ..|| -.||||-||--|- ...--
T Consensus 154 NV~~~p~p~~g~~~~d~~~~a~~i~~~l~~~~~~~~e~~l~~~~~~~~~~~p~~g~~~LPrKFKiavsg~~~~~-~~~~~ 232 (570)
T 4g38_A 154 NVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQND-IDLHA 232 (570)
T ss_dssp CCEECSSCSSGGGHHHHHHHHHHHHHHTCC-------------------------------CBCEEEECTTBCT-TCGGG
T ss_pred ceEecCCcccCccHHHHHHHHHHHHHhhcccchhHHHHHhccchhcccccCccccccCCCCceEEEEECCCccc-ccCcc
Confidence 566776 48887788888888886553 2488 7899999996544 45667
Q ss_pred CceeeecCC-Cc---eeEeeeccee----------------eeecCChhHHHH---HHHHHHHhccccC
Q 004907 673 ADFGYVGGA-PG---KIDLYVGKTV----------------VKRGIAMEQATD---ALIQLIKDHGRWA 718 (724)
Q Consensus 673 AD~GyvGg~-pG---ki~Ly~gke~----------------V~~~Ipeeeavd---~Li~lIk~~g~W~ 718 (724)
.|+|+++.. .| ...+|.|+.. +. -||++++++ ++++.-+++|+..
T Consensus 233 ~Dig~~a~~~~~~~~Gf~v~vGGg~g~~~~~~~t~p~~a~~l~-~v~~e~v~~~~~ai~~~~~~~G~r~ 300 (570)
T 4g38_A 233 NDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFG-YLPLEHTLAVAEAVVTTQRDWGNRT 300 (570)
T ss_dssp SSEEEEEEESSSSEEEEEEEECCBCCCCTTCTTCCCBCCEEEE-EEEGGGHHHHHHHHHHHHHHHCC--
T ss_pred CcEEEEEEEeCCceeeEEEEEccccccccCcccCCCccccccC-ccCHHHHHHHHHHHHHHHHHhcccc
Confidence 899999852 23 4789987632 22 388888666 4555556677543
No 25
>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A
Probab=91.71 E-value=2.5 Score=47.64 Aligned_cols=173 Identities=16% Similarity=0.196 Sum_probs=121.8
Q ss_pred CCHHHHHHHHHHHHH-------------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccc-cCCCC
Q 004907 115 KDVAGTVEEVMRIAD-------------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIR-VNPGN 174 (724)
Q Consensus 115 ~Dv~atv~Qi~~L~~-------------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiR-INPGN 174 (724)
.|.+..+++.+++.+ .+.++.+.+ ++.+++||.-|- |++..+.+|++++...- ||-=|
T Consensus 337 ~~~~~a~~~A~~~v~~GAdiIDIgpg~~~v~~~ee~~rvv~~i-~~~~~vpisIDT-~~~~v~eaal~~~~G~~iINdis 414 (566)
T 1q7z_A 337 GNEEIVIKEAKTQVEKGAEVLDVNFGIESQIDVRYVEKIVQTL-PYVSNVPLSLDI-QNVDLTERALRAYPGRSLFNSAK 414 (566)
T ss_dssp TCCHHHHHHHHHHHHTTCSEEEEECSSGGGSCHHHHHHHHHHH-HHHTCSCEEEEC-CCHHHHHHHHHHCSSCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHH-HhhCCceEEEeC-CCHHHHHHHHHhcCCCCEEEECC
Confidence 478999999988887 333444433 334689999997 58999999999863222 55433
Q ss_pred CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHH
Q 004907 175 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRK 254 (724)
Q Consensus 175 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~ 254 (724)
-.. ++|.++...|+++|.|+=+--+-|..+ .|.+..++.+.+.++.|.+
T Consensus 415 ~~~-----------------------~~~~~~~~~~~~~g~~vV~m~~~~~~p--------~t~~~~~~~l~~~~~~a~~ 463 (566)
T 1q7z_A 415 VDE-----------------------EELEMKINLLKKYGGTLIVLLMGKDVP--------KSFEERKEYFEKALKILER 463 (566)
T ss_dssp SCH-----------------------HHHHHHHHHHHHHCCEEEEESCSSSCC--------CSHHHHHHHHHHHHHHHHH
T ss_pred cch-----------------------hhHHHHHHHHHHhCCeEEEEeCCCCCc--------CCHHHHHHHHHHHHHHHHH
Confidence 321 247788999999999985544444221 2345689999999999999
Q ss_pred CCC-CcEEEEEecC------ChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCC--CchhhHHHHHHHhhcCCCcee
Q 004907 255 LDF-HNFLFSMKAS------NPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGED--GRMKSAIGIGTLLQDGLGDTI 325 (724)
Q Consensus 255 ~~F-~diviS~KaS------nv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~~--G~IKSaiGiG~LL~~GIGDTI 325 (724)
.|+ +||+|--=.. .-..++++++.+.+. .||+=+|+.--..+.+ .++-++.. ...+..|. |-+
T Consensus 464 ~Gi~~~IilDPg~~~igfgk~~~~~l~~~~~~~~~------g~p~l~G~Snksf~~~~~~~l~~t~a-~~a~~~G~-~i~ 535 (566)
T 1q7z_A 464 HDFSDRVIFDPGVLPLGAEGKPVEVLKTIEFISSK------GFNTTVGLSNLSFGLPDRSYYNTAFL-VLGISKGL-SSA 535 (566)
T ss_dssp TTCGGGEEEECCCCCTTTTCCHHHHHHHHHHHHHT------TCEECCBGGGGSTTSTTHHHHHHHHH-HHHHHTTC-CEE
T ss_pred CCCCCcEEEeCCCCcccCcHHHHHHHHHHHHHHhC------CCCEEEEeCcccccCCHHHHHHHHHH-HHHHHcCC-CEE
Confidence 999 7999864331 336678888888654 8999999977666543 45666666 56666774 888
Q ss_pred EEe
Q 004907 326 RVS 328 (724)
Q Consensus 326 RVS 328 (724)
||.
T Consensus 536 rvh 538 (566)
T 1q7z_A 536 IMN 538 (566)
T ss_dssp EEC
T ss_pred EEC
Confidence 884
No 26
>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*
Probab=90.36 E-value=5.5 Score=40.63 Aligned_cols=146 Identities=12% Similarity=0.050 Sum_probs=96.8
Q ss_pred CCCcceeecCCCCHHHHHHHhhhcCcc-ccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 142 NYNIPLVADIHFAPSVALRVAECFDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 142 ~~~iPLVADIHF~~~lAl~a~~~vdki-RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
.+++||.-|- |++..|.+|++++... =||=-|-+. +.+.++...|+++|.|+=+=
T Consensus 67 ~~~~pisIDT-~~~~v~~aAl~a~~Ga~iINdvs~~~-----------------------d~~~~~~~~~a~~~~~vvlm 122 (262)
T 1f6y_A 67 VSNLTLCLDS-TNIKAIEAGLKKCKNRAMINSTNAER-----------------------EKVEKLFPLAVEHGAALIGL 122 (262)
T ss_dssp TCCSEEEEEC-SCHHHHHHHHHHCSSCEEEEEECSCH-----------------------HHHHHHHHHHHHTTCEEEEE
T ss_pred hCCCeEEEeC-CCHHHHHHHHhhCCCCCEEEECCCCc-----------------------ccHHHHHHHHHHhCCcEEEE
Confidence 4689999997 5899999999986432 255444321 23567889999999988332
Q ss_pred ec--cCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEE----ecCC---hhHHHHHHHHHHHHhhcCCC-
Q 004907 221 TN--HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH--NFLFSM----KASN---PVVMVQAYRLLVAEMYVHGW- 288 (724)
Q Consensus 221 vN--~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~--diviS~----KaSn---v~~~v~Ayrlla~~m~~~g~- 288 (724)
-+ .| .+ .|.+..++.+.+.++.|++.|+. +|++-- .+.+ ...+++.++.|.++ +
T Consensus 123 h~~~~G-~p--------~t~~~~~~~~~~~~~~a~~~Gi~~~~IilDPg~g~~g~~~~~~~~~l~~l~~l~~~-----~~ 188 (262)
T 1f6y_A 123 TMNKTG-IP--------KDSDTRLAFAMELVAAADEFGLPMEDLYIDPLILPANVAQDHAPEVLKTLQQIKML-----AD 188 (262)
T ss_dssp SCCSSC-SC--------SSHHHHHHHHHHHHHHHHHHTCCGGGEEEECCCCCTTTCTTHHHHHHHHHHHHHTC-----CS
T ss_pred cCCCCC-CC--------CCHHHHHHHHHHHHHHHHHCCCCcccEEEeCCCCcCCCChHHHHHHHHHHHHHHHH-----hC
Confidence 22 11 11 24567778889999999999996 888864 2222 24678888888765 5
Q ss_pred -CccccccccccCCCC--CCchhhHHHHHHHhhcCCCceeEE
Q 004907 289 -DYPLHLGVTEAGEGE--DGRMKSAIGIGTLLQDGLGDTIRV 327 (724)
Q Consensus 289 -dYPLHLGVTEAG~~~--~G~IKSaiGiG~LL~~GIGDTIRV 327 (724)
.||+=+|+.=-..+. .-++.++.. ...+..|.| -.||
T Consensus 189 pg~pvl~G~Srksfg~~~~~~l~~t~~-~~a~~~g~~-~~iv 228 (262)
T 1f6y_A 189 PAPKTVLGLSNVSQNCQNRPLINRTFL-AMAMACGLM-SAIA 228 (262)
T ss_dssp SCCEEEEEGGGGGTTCSSHHHHHHHHH-HHHHHTTCC-EEEE
T ss_pred CCCCEEEeecCCcCCCCHHHHHHHHHH-HHHHHHhCC-eEEE
Confidence 899999997665543 234444432 455556654 4444
No 27
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*
Probab=90.15 E-value=4.1 Score=42.86 Aligned_cols=114 Identities=9% Similarity=0.122 Sum_probs=77.7
Q ss_pred CCCcceee-cC---CCCHHHHHHHhhh-cC-ccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC
Q 004907 142 NYNIPLVA-DI---HFAPSVALRVAEC-FD-KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 215 (724)
Q Consensus 142 ~~~iPLVA-DI---HF~~~lAl~a~~~-vd-kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 215 (724)
.+++||+- |- -|++..+.+|+++ .+ |-=||.=|-. +...+...|+++|.
T Consensus 120 ~~~vplsI~DT~~~~~~~~V~eaal~aga~~k~iINdvs~~-------------------------~~~~~~~~aa~~g~ 174 (310)
T 2h9a_B 120 AIDVPLMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSATKD-------------------------NYKPIVATCMVHGH 174 (310)
T ss_dssp HCSSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEECTT-------------------------THHHHHHHHHHHTC
T ss_pred hCCceEEEECCCCCCCCHHHHHHHHHhCCCCCCEEEECCCC-------------------------ccHHHHHHHHHhCC
Confidence 47899998 87 5899999999998 54 2335543321 23568889999999
Q ss_pred cEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCC--CcEEEEEe----cCChhHHHHHHHHHHHH-hh-cCC
Q 004907 216 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF--HNFLFSMK----ASNPVVMVQAYRLLVAE-MY-VHG 287 (724)
Q Consensus 216 ~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F--~diviS~K----aSnv~~~v~Ayrlla~~-m~-~~g 287 (724)
|+=+-.+. | ++.+.+.++.|++.|+ ++|++--= +++....++.|.+|..- +. -..
T Consensus 175 ~vv~m~~~------------d-----v~~l~~~~~~a~~~Gi~~e~IilDPg~g~~g~~~e~~~~~l~~ir~~al~~~~~ 237 (310)
T 2h9a_B 175 SVVASAPL------------D-----INLSKQLNIMIMEMNLAPNRIIMDPLIGALGYGIEYSYSIIERMRLGALTGDKI 237 (310)
T ss_dssp EEEEECSS------------C-----HHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHHHHHTTCGG
T ss_pred CEEEEChh------------H-----HHHHHHHHHHHHHCCCChhhEEEeCCCccccCchHhHHHHHHHHHHhhhhhhhc
Confidence 98442210 1 4778889999999999 78998643 22333555666666651 22 123
Q ss_pred CCcccccccc
Q 004907 288 WDYPLHLGVT 297 (724)
Q Consensus 288 ~dYPLHLGVT 297 (724)
+.||+=+|++
T Consensus 238 lg~P~l~g~S 247 (310)
T 2h9a_B 238 LAMPVVCFIG 247 (310)
T ss_dssp GCSCBEECHH
T ss_pred CCCCEEEEcc
Confidence 5799999996
No 28
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=89.79 E-value=0.47 Score=52.22 Aligned_cols=56 Identities=25% Similarity=0.441 Sum_probs=47.9
Q ss_pred eeecCC---CCccccccHHHHHHHHHHHh------cCCC-CcEEEEeeeeecCCCCC-CCCceeeecC
Q 004907 624 EYVSCP---SCGRTLFDLQEISAEIREKT------SHLP-GVSIAIMGCIVNGPGEM-ADADFGYVGG 680 (724)
Q Consensus 624 e~ISCP---sCGRTlfDLq~~~~~Ik~~t------~hLk-gvkIAVMGCIVNGPGEm-adAD~GyvGg 680 (724)
+.++|| .|.--.+|-+.++.++.+++ ..|| .+||+|-||. |+=|.. .-+|+|++|.
T Consensus 173 nivaC~G~~~C~~a~~DT~~la~~L~~~l~~~~~~~~LP~KfKI~iSGCp-N~C~~~v~~aDIGiiG~ 239 (437)
T 3or1_A 173 TPESCLGISRCEFACYDTQLMCYQLTQDYQDELHRPAFPYKFKFKFDGCP-NGCVASMARSDFAVIGT 239 (437)
T ss_dssp CCEECCGGGSCSSCCSCHHHHHHHHHHHTHHHHHSCCSSSCBCEEEESST-TCTTCHHHHCSEEEEEE
T ss_pred eeeccccccccCccccccchhhhhhHhhhhhccccccCCceeeEeecccc-ccccchhhhcccccccc
Confidence 689999 58888899999999998876 3577 7999999997 888876 6799999986
No 29
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=89.31 E-value=0.6 Score=50.97 Aligned_cols=56 Identities=23% Similarity=0.403 Sum_probs=45.5
Q ss_pred eeecCCC---CccccccHHHHHHHHHHHh------cCCC-CcEEEEeeeeecCCCCC-CCCceeeecC
Q 004907 624 EYVSCPS---CGRTLFDLQEISAEIREKT------SHLP-GVSIAIMGCIVNGPGEM-ADADFGYVGG 680 (724)
Q Consensus 624 e~ISCPs---CGRTlfDLq~~~~~Ik~~t------~hLk-gvkIAVMGCIVNGPGEm-adAD~GyvGg 680 (724)
+.++||+ |.--.+|-+.++.+|.+++ ..|| .+||+|-||. |+=+.. .-+|+|++|.
T Consensus 172 ni~aC~G~~~C~~a~~Dt~~la~~L~~~l~~~~~~~~LP~KfKI~iSGCp-N~C~~~~~~~DIGiiG~ 238 (418)
T 3mm5_A 172 TPSACMGPALCEFACYDTLELCYDLTMTYQDELHRPMWPYKFKIKCAGCP-NDCVASKARSDFAIIGT 238 (418)
T ss_dssp CCEECCGGGTCTTCSSCHHHHHHHHHHHTHHHHHSCCSSSCBCEEEESST-TCTTCHHHHCSEEEEEE
T ss_pred ceEecCCcccccchhhhHHHHHHHHHHHHHHhhhhccCCcceEEeeeccc-cchhhHHHhcccccccc
Confidence 5789976 6667789899998888776 2577 7999999997 777775 6899999984
No 30
>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}
Probab=89.26 E-value=3.1 Score=40.53 Aligned_cols=134 Identities=15% Similarity=0.096 Sum_probs=83.1
Q ss_pred eEEeeccCCCC-CCHHHHHHHHHHHH-------------------HHHHHHHHHhhhcCCCcceeecCCCC---------
Q 004907 104 IRVQTMTTNDT-KDVAGTVEEVMRIA-------------------DACFEIKNSLVQKNYNIPLVADIHFA--------- 154 (724)
Q Consensus 104 I~VQSMt~t~T-~Dv~atv~Qi~~L~-------------------~a~~~I~~~L~~~~~~iPLVADIHF~--------- 154 (724)
+.++|++-.+. .+.+.+++.+.++- ..++++++.|.+.|..+..++ .|++
T Consensus 3 lg~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~-~~~~~~~~~~~~~ 81 (286)
T 3dx5_A 3 YSLCTISFRHQLISFTDIVQFAYENGFEGIELWGTHAQNLYMQEYETTERELNCLKDKTLEITMIS-DYLDISLSADFEK 81 (286)
T ss_dssp EEEEGGGGTTSCCCHHHHHHHHHHTTCCEEEEEHHHHHHHHHHCHHHHHHHHHHTGGGTCCEEEEE-CCCCCSTTSCHHH
T ss_pred EEEEeeeccCCCCCHHHHHHHHHHhCCCEEEEcccccccccccCHHHHHHHHHHHHHcCCeEEEEe-cCCCCCCchhHHH
Confidence 45666655442 56777666665431 145677888888888777664 2431
Q ss_pred ----HHHHHHHhh-h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCch
Q 004907 155 ----PSVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 228 (724)
Q Consensus 155 ----~~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~ 228 (724)
.+-+++.+. . +..|++.||...... ...+.++++.+.+.++.+.|+++|+.+=|= ||..
T Consensus 82 ~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~-----------~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE-~~~~--- 146 (286)
T 3dx5_A 82 TIEKCEQLAILANWFKTNKIRTFAGQKGSAD-----------FSQQERQEYVNRIRMICELFAQHNMYVLLE-THPN--- 146 (286)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECSCSSCGGG-----------SCHHHHHHHHHHHHHHHHHHHHTTCEEEEE-CCTT---
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcCCCCCccc-----------CcHHHHHHHHHHHHHHHHHHHHhCCEEEEe-cCCC---
Confidence 112333333 3 889999999875421 123456788888999999999999755443 3311
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 229 RIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 229 ~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
.+..++ -+..+++++.|-.++.+-+
T Consensus 147 ----~~~~~~-------~~~~~l~~~~~~~~vg~~~ 171 (286)
T 3dx5_A 147 ----TLTDTL-------PSTLELLGEVDHPNLKINL 171 (286)
T ss_dssp ----STTSSH-------HHHHHHHHHHCCTTEEEEE
T ss_pred ----cCcCCH-------HHHHHHHHhcCCCCeEEEe
Confidence 122333 3466778888888888877
No 31
>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*
Probab=88.70 E-value=3.6 Score=42.36 Aligned_cols=194 Identities=14% Similarity=0.171 Sum_probs=102.8
Q ss_pred CcccccccccccCCCCceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHH
Q 004907 72 PRQKYCESIHKTVRRKTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEI 134 (724)
Q Consensus 72 ~~~~Yc~s~~~~~Rr~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I 134 (724)
....|-.+..+ ++|.|+++.||++.|...=|-+-.+ ++...+++.++.+ ....+
T Consensus 15 ~~~~~~~~~~m------~~v~v~~~~~g~g~p~i~v~l~~~~---~~e~~~~~~~~~~~gaD~VElRvD~l~~~~~~~~v 85 (276)
T 3o1n_A 15 TENLYFQSNAM------KTVTVRDLVVGEGAPKIIVSLMGKT---ITDVKSEALAYREADFDILEWRVDHFANVTTAESV 85 (276)
T ss_dssp ----------C------CCEEETTEEETSSSCEEEEEECCSS---HHHHHHHHHHHTTSCCSEEEEEGGGCTTTTCHHHH
T ss_pred chheeeccCCc------eEEEECCEEeCCCCcEEEEEeCCCC---HHHHHHHHHHHhhCCCCEEEEEeccccccCcHHHH
Confidence 44557666554 3599999999999998888876654 5555555555542 11222
Q ss_pred HH---HhhhcCCCcceeecCC-------C--CHHHHHHHhhhcCccccC-CCCCcchhhhhhccccchHHHHHHhhhhhh
Q 004907 135 KN---SLVQKNYNIPLVADIH-------F--APSVALRVAECFDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEE 201 (724)
Q Consensus 135 ~~---~L~~~~~~iPLVADIH-------F--~~~lAl~a~~~vdkiRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e 201 (724)
.+ .|++.-.++|+|.=+- | +...-++.++.+ +|.. | .+-| .|+ ..=++
T Consensus 86 ~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~ll~~~--l~~g~~-dyID-------vEl---------~~~~~ 146 (276)
T 3o1n_A 86 LEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAA--VDSGLV-DMID-------LEL---------FTGDD 146 (276)
T ss_dssp HHHHHHHHHHCCSSCEEEECCBGGGTCSBCCCHHHHHHHHHHH--HHHTCC-SEEE-------EEG---------GGCHH
T ss_pred HHHHHHHHHhcCCCCEEEEEEEhhhCCCCCCCHHHHHHHHHHH--HhcCCC-CEEE-------EEC---------cCCHH
Confidence 22 2222333688876332 2 222111111111 1221 1 1111 111 11134
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHH
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 281 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~ 281 (724)
.++++++.|++.++.| |+-+| -|..||. -+.-.+.++-+.++|-+=++|-..+.+..+.....+...+
T Consensus 147 ~~~~l~~~a~~~~~kv-I~S~H---------df~~tP~--~~el~~~~~~~~~~GaDIvKia~~a~s~~Dvl~Ll~~~~~ 214 (276)
T 3o1n_A 147 EVKATVGYAHQHNVAV-IMSNH---------DFHKTPA--AEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVE 214 (276)
T ss_dssp HHHHHHHHHHHTTCEE-EEEEE---------ESSCCCC--HHHHHHHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEE-EEEee---------cCCCCcC--HHHHHHHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHHH
Confidence 5778999999999888 77665 1334664 3566677788889999999999999887766555444332
Q ss_pred HhhcCCCCccccccccccCCCCCCchhhH
Q 004907 282 EMYVHGWDYPLHLGVTEAGEGEDGRMKSA 310 (724)
Q Consensus 282 ~m~~~g~dYPLHLGVTEAG~~~~G~IKSa 310 (724)
. .+...+.|+ ++ =.+|..|++--.
T Consensus 215 ~-~~~~~~~Pl-Ia---~~MG~~G~~SRi 238 (276)
T 3o1n_A 215 M-QERYADRPI-IT---MSMSKTGVISRL 238 (276)
T ss_dssp H-HHHTCCSCC-EE---EECSGGGTHHHH
T ss_pred H-HhcCCCCCE-EE---EECCCchhhHHH
Confidence 2 111234454 22 246666765433
No 32
>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A
Probab=88.56 E-value=5.3 Score=41.39 Aligned_cols=170 Identities=18% Similarity=0.244 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhh
Q 004907 121 VEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI 199 (724)
Q Consensus 121 v~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I 199 (724)
-+++.++...++.|++ .+++||.-|- |++..|.+|+++ ++= ||=-|-+. .
T Consensus 72 ~eE~~rv~pvi~~l~~-----~~~~piSIDT-~~~~va~aAl~aGa~i--INdvsg~~-d-------------------- 122 (282)
T 1aj0_A 72 EEELQRVIPVVEAIAQ-----RFEVWISVDT-SKPEVIRESAKVGAHI--INDIRSLS-E-------------------- 122 (282)
T ss_dssp HHHHHHHHHHHHHHHH-----HCCCEEEEEC-CCHHHHHHHHHTTCCE--EEETTTTC-S--------------------
T ss_pred HHHHHHHHHHHHHHHh-----hcCCeEEEeC-CCHHHHHHHHHcCCCE--EEECCCCC-C--------------------
Confidence 3566666666666665 3589999997 679999999997 332 45444321 1
Q ss_pred hhhHHHHHHHHHhcCCcEEEeeccCCCchHHHh--hcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEEe---cCChhHH
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMS--YYGDSPRGMVESAFEFARICRKLDFH--NFLFSMK---ASNPVVM 272 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~--~yg~t~~amVeSAle~~~i~e~~~F~--diviS~K---aSnv~~~ 272 (724)
.++++.|+++|.|+=+=-+.| .++.+-+ .|.|--+.+.+...+.++.|++.|+. +|+|--= +.+..
T Consensus 123 ----~~~~~~~a~~~~~vVlmh~~G-~p~tm~~~~~y~d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf~k~~~-- 195 (282)
T 1aj0_A 123 ----PGALEAAAETGLPVCLMHMQG-NPKTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLS-- 195 (282)
T ss_dssp ----TTHHHHHHHHTCCEEEECCSS-CTTCCSCCCCCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHH--
T ss_pred ----HHHHHHHHHhCCeEEEEccCC-CCccccccCccchHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcccCHH--
Confidence 236788899999985544433 2222211 25444467789999999999999997 8998631 12222
Q ss_pred HHHHHHHHHHhhc-CCCCcccccccc------cc-CCCCCCchhhHHHHHHHhhcCCCceeEEe
Q 004907 273 VQAYRLLVAEMYV-HGWDYPLHLGVT------EA-GEGEDGRMKSAIGIGTLLQDGLGDTIRVS 328 (724)
Q Consensus 273 v~Ayrlla~~m~~-~g~dYPLHLGVT------EA-G~~~~G~IKSaiGiG~LL~~GIGDTIRVS 328 (724)
+.+.+|.. +.+ ....||+=+|+. +- |....-++-.+.....+...-=.+-+||.
T Consensus 196 -~n~~ll~~-l~~~~~~g~P~l~G~Srksfig~~~g~~~~~rl~~t~a~~~~a~~~ga~Ivrvh 257 (282)
T 1aj0_A 196 -HNYSLLAR-LAEFHHFNLPLLVGMSRKSMIGQLLNVGPSERLSGSLACAVIAAMQGAHIIRVH 257 (282)
T ss_dssp -HHHHHHHT-GGGGGGGCSCBEECCTTCHHHHHHHTCCGGGCHHHHHHHHHHHHHTTCSEEEES
T ss_pred -HHHHHHHH-HHHHhcCCCCEEEEECccHhHHhhcCCCHHHHHHHHHHHHHHHHHCCCeEEEeC
Confidence 22333322 111 125899999997 21 22234566655554444333334666653
No 33
>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}
Probab=87.81 E-value=25 Score=35.59 Aligned_cols=92 Identities=11% Similarity=0.123 Sum_probs=59.3
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHH
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVA 281 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~ 281 (724)
.+..+++.+++.|+.| |+-+|= |..||. .+.-.+.++-++++|-+=++|-..+.+..+...-.+...+
T Consensus 127 ~~~~l~~~~~~~~~kv-I~S~Hd---------f~~tP~--~~el~~~~~~~~~~gaDivKia~~a~s~~D~l~ll~~~~~ 194 (257)
T 2yr1_A 127 RIADVRRMTEECSVWL-VVSRHY---------FDGTPR--KETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEE 194 (257)
T ss_dssp HHHHHHHHHHHTTCEE-EEEEEE---------SSCCCC--HHHHHHHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCCCEE-EEEecC---------CCCCcC--HHHHHHHHHHHHhcCCCEEEEEeccCCHHHHHHHHHHHHH
Confidence 4667899999988876 666551 223553 3555667788889999999999999887776655554433
Q ss_pred HhhcCCCCccccccccccCCCCCCchhhHH
Q 004907 282 EMYVHGWDYPLHLGVTEAGEGEDGRMKSAI 311 (724)
Q Consensus 282 ~m~~~g~dYPLHLGVTEAG~~~~G~IKSai 311 (724)
+ +...+.|+ ++ =++|..|++--..
T Consensus 195 -~-~~~~~~P~-I~---~~MG~~G~~SRi~ 218 (257)
T 2yr1_A 195 -A-RRELAIPL-IT---MAMGGLGAITRLA 218 (257)
T ss_dssp -H-HHHCSSCE-EE---EECTTTTHHHHHH
T ss_pred -H-hccCCCCE-EE---EECCCCcchHHHH
Confidence 2 11234553 22 3567777764433
No 34
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=87.63 E-value=2.8 Score=44.55 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=43.8
Q ss_pred eeecCCC---CccccccHHHHHHHHHHHh------cCCC-CcEEEEeeeeecCCCCCCCCceeeecC
Q 004907 624 EYVSCPS---CGRTLFDLQEISAEIREKT------SHLP-GVSIAIMGCIVNGPGEMADADFGYVGG 680 (724)
Q Consensus 624 e~ISCPs---CGRTlfDLq~~~~~Ik~~t------~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg 680 (724)
+.++||+ |.--.+|-+.++.++.+.+ ..|| .+||++-||. |+=+...-+|+|++|.
T Consensus 130 ni~aC~g~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP~k~kI~vsgC~-~~C~~~~~~Dig~~g~ 195 (366)
T 3mm5_B 130 NIVHTQGWIHCHTPAIDASGIVKAVMDELYEYFTDHKLPAMCRISLACCA-NMCGAVHASDIAIVGI 195 (366)
T ss_dssp CCBCCCHHHHCSSCSSCSHHHHHHHHHHTHHHHHSCCBSSCCCEEEESST-TCSSSGGGSSEEEEEE
T ss_pred eeecCCCccccchHHHHHHHHHHHHHHHHHHhhccccccccceeccccCc-cccccccccccccccc
Confidence 6789985 8888899888888776665 2467 7999999996 5566666699999874
No 35
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}
Probab=86.81 E-value=8.5 Score=40.48 Aligned_cols=128 Identities=22% Similarity=0.263 Sum_probs=79.8
Q ss_pred eeEEEeeeecCCCCC-eEEeeccCCCCCCHHHHHHHHHHHHH---------------------------------HHHHH
Q 004907 89 RTVMVGNVAIGSEHP-IRVQTMTTNDTKDVAGTVEEVMRIAD---------------------------------ACFEI 134 (724)
Q Consensus 89 r~V~VG~V~IGG~~P-I~VQSMt~t~T~Dv~atv~Qi~~L~~---------------------------------a~~~I 134 (724)
+.|.||++.+|++.| ++|-=.+.-. |.+..++-..+|.+ +|+.+
T Consensus 27 ~~v~~~~i~~G~~~~l~vIaGPCsie--s~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L 104 (298)
T 3fs2_A 27 STVKVGNVTFSNSAPLALIAGPCQME--TRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEKALEVF 104 (298)
T ss_dssp SSEEETTEEECTTSCCEEEEECSBCC--CHHHHHHHHHHHHHHHHHHTCCEEEECBCCCCC---------CCHHHHHHHH
T ss_pred ceEEECCEEECCCCceEEEEeCCcCC--CHHHHHHHHHHHHHHHHHcCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHH
Confidence 369999999999965 5665556554 34444333333332 44455
Q ss_pred HHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcC
Q 004907 135 KNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG 214 (724)
Q Consensus 135 ~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g 214 (724)
++ .++...+|++.++|- +.-+....+.+|-+-|--+|+-+ .++++++-..|
T Consensus 105 ~~--~~~e~GLpv~Tev~D-~~~v~~l~~~vd~lkIgA~~~~n--------------------------~~LLr~va~~g 155 (298)
T 3fs2_A 105 SD--LKKEYGFPVLTDIHT-EEQCAAVAPVVDVLQIPAFLCRQ--------------------------TDLLIAAARTG 155 (298)
T ss_dssp HH--HHHHHCCCEEEECCS-HHHHHHHTTTCSEEEECGGGTTC--------------------------HHHHHHHHHTT
T ss_pred HH--HHHhcCCeEEEEeCC-HHHHHHHHhhCCEEEECccccCC--------------------------HHHHHHHHccC
Confidence 54 345677999999965 54444556678888888877743 23666666889
Q ss_pred CcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 215 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 215 ~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~divi 262 (724)
.|| ++--|- .-|++.|. .-++.+.+.|=++|++
T Consensus 156 kPV--ilK~Gm---------s~t~~ei~----~ave~i~~~Gn~~iiL 188 (298)
T 3fs2_A 156 RVV--NVKKGQ---------FLAPWDMK----NVLAKITESGNPNVLA 188 (298)
T ss_dssp SEE--EEECCT---------TCCGGGHH----HHHHHHHTTTCCCEEE
T ss_pred CcE--EEeCCC---------CCCHHHHH----HHHHHHHHcCCCeEEE
Confidence 998 443332 02555552 2344556777777766
No 36
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Probab=86.38 E-value=15 Score=38.31 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=93.4
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCccc-cCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIR-VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiR-INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
++||.-|- |++..|.+|+++ ++=|= ||-+| + .++.+.|+++|.|+=+--
T Consensus 97 ~vpiSIDT-~~~~Va~aAl~aGa~iINdVsg~~--d--------------------------~~m~~~~a~~~~~vVlmh 147 (294)
T 2y5s_A 97 NVPLSIDT-YKPAVMRAALAAGADLINDIWGFR--Q--------------------------PGAIDAVRDGNSGLCAMH 147 (294)
T ss_dssp CSCEEEEC-CCHHHHHHHHHHTCSEEEETTTTC--S--------------------------TTHHHHHSSSSCEEEEEC
T ss_pred CCeEEEEC-CCHHHHHHHHHcCCCEEEECCCCC--c--------------------------hHHHHHHHHhCCCEEEEC
Confidence 89999986 789999999997 43221 23333 2 136788899999985544
Q ss_pred ccCCCchHH---HhhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEE-----ecCC--hhHHHHHHHHHHHHhhcCCCC
Q 004907 222 NHGSLSDRI---MSYYGDSPRGMVESAFEFARICRKLDFH--NFLFSM-----KASN--PVVMVQAYRLLVAEMYVHGWD 289 (724)
Q Consensus 222 N~GSL~~~i---l~~yg~t~~amVeSAle~~~i~e~~~F~--diviS~-----KaSn--v~~~v~Ayrlla~~m~~~g~d 289 (724)
+.| .++.+ ...|.|--+.+++...+.++.|++.|+. +|+|-- |... -..+++.++.|.+. .++...
T Consensus 148 ~~G-~p~tm~~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~Gf~kt~~~~n~~ll~~l~~l~~~-~~~~~g 225 (294)
T 2y5s_A 148 MLG-EPQTMQVGEPDYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGFGFGKAVVDDNYALLAALPDTAPA-RPDGRA 225 (294)
T ss_dssp CCE-ETTTTEECCCCCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSSCTTHHHHHHHHTGGGGSCB-CTTSSB
T ss_pred CCC-CCccccccCCccccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCcccccchHHHHHHHHHHHHHHhc-cccCCC
Confidence 433 23322 1135443467899999999999999997 899853 3321 01222222222100 011368
Q ss_pred cccccccccc-------CCCCC-Cchh-hHHHHHHHhhcCCCceeEEe
Q 004907 290 YPLHLGVTEA-------GEGED-GRMK-SAIGIGTLLQDGLGDTIRVS 328 (724)
Q Consensus 290 YPLHLGVTEA-------G~~~~-G~IK-SaiGiG~LL~~GIGDTIRVS 328 (724)
||+=+|+.-= |.... .|.- +++-....+..| .+-|||.
T Consensus 226 ~Pvl~G~Srksfig~l~g~~~~~~R~~~t~a~~~~a~~~G-a~IvrvH 272 (294)
T 2y5s_A 226 YPILAGMSRKSMLGAVIGGKPPLERVAASVAAALCAVERG-AAIVRVH 272 (294)
T ss_dssp CCBEEECTTCHHHHTTTTSCCGGGCHHHHHHHHHHHHHTT-CSEEEES
T ss_pred CCEEEEecccHHhhhhcCCCchhhhhHHHHHHHHHHHHcC-CcEEEcC
Confidence 9999998652 21121 3433 666666777888 7888864
No 37
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=86.23 E-value=4.9 Score=39.35 Aligned_cols=63 Identities=8% Similarity=0.054 Sum_probs=34.4
Q ss_pred hhhhHHHHHHHHHhcCCc-EEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEe
Q 004907 199 IEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 265 (724)
Q Consensus 199 I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K 265 (724)
..+.++..++.|++.|.+ |++...+|..+... ......-+.++++--+.++++++.|. .|.+-
T Consensus 102 ~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~-p~~~~~~~~~~~~l~~l~~~a~~~Gv---~l~lE 165 (287)
T 3kws_A 102 CMDTMKEIIAAAGELGSTGVIIVPAFNGQVPAL-PHTMETRDFLCEQFNEMGTFAAQHGT---SVIFE 165 (287)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBC-CSSHHHHHHHHHHHHHHHHHHHHTTC---CEEEC
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCC-CCHHHHHHHHHHHHHHHHHHHHHcCC---EEEEE
Confidence 345577899999999998 55543333322100 00000113455555566677777775 45554
No 38
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}
Probab=85.92 E-value=7.8 Score=40.98 Aligned_cols=166 Identities=14% Similarity=0.160 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccc-cCCCCCcchhhhhhccccchHHHHHHhhh
Q 004907 121 VEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR-VNPGNFADRRAQFEQLEYTDDEYQKELQH 198 (724)
Q Consensus 121 v~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiR-INPGNig~~~k~f~~~~Ytdeey~~ele~ 198 (724)
-+++.|+...++.|++ .+++||.-|- |++..|.+|+++ ++=|= |+-++.
T Consensus 87 ~eE~~Rv~pvI~~l~~-----~~~vpISIDT-~~~~Va~aAl~aGa~iINDVsg~~~----------------------- 137 (314)
T 3tr9_A 87 QIELDRLLPVIDAIKK-----RFPQLISVDT-SRPRVMREAVNTGADMINDQRALQL----------------------- 137 (314)
T ss_dssp HHHHHHHHHHHHHHHH-----HCCSEEEEEC-SCHHHHHHHHHHTCCEEEETTTTCS-----------------------
T ss_pred HHHHHHHHHHHHHHHh-----hCCCeEEEeC-CCHHHHHHHHHcCCCEEEECCCCCc-----------------------
Confidence 3566666666666665 3689999997 889999999997 44331 233331
Q ss_pred hhhhHHHHHHHHHhcCCcEEEeeccCCCchHH--HhhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEEe------cCC
Q 004907 199 IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRI--MSYYGDSPRGMVESAFEFARICRKLDFH--NFLFSMK------ASN 268 (724)
Q Consensus 199 I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~i--l~~yg~t~~amVeSAle~~~i~e~~~F~--diviS~K------aSn 268 (724)
.++.+.|+++|.|+=+--+.|- ++.+ ...| |-.+.+.+...+.++.|++.|+. +|+|--= +.+
T Consensus 138 -----~~m~~v~a~~g~~vVlMh~~G~-P~tmq~~~~y-dvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG~G~~~F~Kt 210 (314)
T 3tr9_A 138 -----DDALTTVSALKTPVCLMHFPSE-TRKPGSTTHF-YFLQSVKKELQESIQRCKKAGISEDRIIIDPGFGQGNYGKN 210 (314)
T ss_dssp -----TTHHHHHHHHTCCEEEECCCCT-TCCTTSSCHH-HHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCCCSGGGCCC
T ss_pred -----hHHHHHHHHhCCeEEEECCCCC-Cccccccccc-chHHHHHHHHHHHHHHHHHcCCCHhHEEEeCCCCchhhcCC
Confidence 1367888899999955444443 2221 1234 44567888899999999999996 8997531 112
Q ss_pred hhHHHHHHHHHHHHhhc-CCCCcccccccc------cc-CCCCCCchhhHHHHH-HHhhcCCCceeEE
Q 004907 269 PVVMVQAYRLLVAEMYV-HGWDYPLHLGVT------EA-GEGEDGRMKSAIGIG-TLLQDGLGDTIRV 327 (724)
Q Consensus 269 v~~~v~Ayrlla~~m~~-~g~dYPLHLGVT------EA-G~~~~G~IKSaiGiG-~LL~~GIGDTIRV 327 (724)
. -+.|.+|.. +.+ ....||+=+|+. +- |....-|.--++.+. ..+..| -|-|||
T Consensus 211 ~---~~n~~lL~~-l~~l~~lg~PvL~G~SRKsfig~~~~~~~~~R~~~t~a~~~~a~~~G-a~IvRv 273 (314)
T 3tr9_A 211 V---SENFYLLNK-LPEFVAMGLPVLSGWSRKSMIGDVLNQPPENRLFGSIAADVLAVYHG-ASIIRT 273 (314)
T ss_dssp H---HHHHHHHHT-THHHHTTSSCBEECCTTCHHHHHHHTCCGGGCHHHHHHHHHHHHHTT-CSEEEE
T ss_pred H---HHHHHHHHH-HHHHhcCCCCEEEEechhhhhhhhcCCChHHhHHHHHHHHHHHHHcC-CcEEEe
Confidence 2 223333322 111 125899999982 11 122224444444443 444556 477776
No 39
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=84.93 E-value=5 Score=39.42 Aligned_cols=137 Identities=9% Similarity=0.070 Sum_probs=81.3
Q ss_pred CCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------------HHHHHHHHhhhcCCCcceee-cCC----C
Q 004907 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------------ACFEIKNSLVQKNYNIPLVA-DIH----F 153 (724)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------------a~~~I~~~L~~~~~~iPLVA-DIH----F 153 (724)
.-++.+||.+-.+..+.+..++.+.++-= .++++++.|.+.+..+..+. ..| |
T Consensus 16 ~~~~gi~~~~~~~~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l 95 (295)
T 3cqj_A 16 QIPLGIYEKALPAGECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPL 95 (295)
T ss_dssp CCCEEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGGGGTSCT
T ss_pred cccceeeeecCCCCCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCcccCCCC
Confidence 45788999887667788888777665411 25578887777777665442 333 2
Q ss_pred ---CH----------HHHHHHhh-h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 154 ---AP----------SVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 154 ---~~----------~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
++ +-+++.++ . +..|++.++.... +....+.++++.+.++++.+.|+++|+ +
T Consensus 96 ~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~-----------~~~~~~~~~~~~~~l~~l~~~a~~~Gv--~ 162 (295)
T 3cqj_A 96 GSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYY-----------QEANNETRRRFRDGLKESVEMASRAQV--T 162 (295)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSS-----------SCCCHHHHHHHHHHHHHHHHHHHHHTC--E
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCc-----------CcCHHHHHHHHHHHHHHHHHHHHHhCC--E
Confidence 22 12223333 2 7777776443200 112344567777888889999999886 4
Q ss_pred Eee-ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 219 IGT-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 219 IGv-N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
|++ |+.. .+..|+ -+..+++++.|-.++.+-+
T Consensus 163 l~lEn~~~-------~~~~~~-------~~~~~l~~~v~~~~vg~~~ 195 (295)
T 3cqj_A 163 LAMEIMDY-------PLMNSI-------SKALGYAHYLNNPWFQLYP 195 (295)
T ss_dssp EEEECCSS-------GGGCSH-------HHHHHHHHHHCCTTEEEEC
T ss_pred EEEeeCCC-------cccCCH-------HHHHHHHHhcCCCCeEEEe
Confidence 565 4431 122333 3456677777777777766
No 40
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=84.71 E-value=13 Score=35.39 Aligned_cols=165 Identities=10% Similarity=0.074 Sum_probs=96.6
Q ss_pred CCCeEEeeccCCCCCCHHHHHHHHHHHHH---------HHHHHHHHhhhcCCCcceee-------cCCC---C-HHHHHH
Q 004907 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIAD---------ACFEIKNSLVQKNYNIPLVA-------DIHF---A-PSVALR 160 (724)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~---------a~~~I~~~L~~~~~~iPLVA-------DIHF---~-~~lAl~ 160 (724)
+-=|++|=.+..+-.|-+.+.+...++++ ..+.|++ +++.+++|+++ |.|+ . ...+..
T Consensus 6 ~~~~~~q~~~~~p~~~~~~~~~~a~~~~~~Ga~~i~~~~~~~i~~--i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~ 83 (223)
T 1y0e_A 6 GLIVSCQALPDEPLHSSFIMSKMALAAYEGGAVGIRANTKEDILA--IKETVDLPVIGIVKRDYDHSDVFITATSKEVDE 83 (223)
T ss_dssp EEEEECCCCTTSTTCCHHHHHHHHHHHHHHTCSEEEEESHHHHHH--HHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHH
T ss_pred CeEEEecCCCCCCCCCCccHHHHHHHHHHCCCeeeccCCHHHHHH--HHHhcCCCEEeeeccCCCccccccCCcHHHHHH
Confidence 34478899899888999988888888887 2233333 23347899975 5566 2 233445
Q ss_pred Hhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhc--CCcEEEeeccCCCchHHHhhcCCC
Q 004907 161 VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY--GRAVRIGTNHGSLSDRIMSYYGDS 237 (724)
Q Consensus 161 a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~--g~~IRIGvN~GSL~~~il~~yg~t 237 (724)
+++. +|.|=+.-...-+.. +.+.++++.++++ |.++ +++.. |
T Consensus 84 ~~~~Gad~v~l~~~~~~~p~---------------------~~~~~~i~~~~~~~~~~~v--~~~~~------------t 128 (223)
T 1y0e_A 84 LIESQCEVIALDATLQQRPK---------------------ETLDELVSYIRTHAPNVEI--MADIA------------T 128 (223)
T ss_dssp HHHHTCSEEEEECSCSCCSS---------------------SCHHHHHHHHHHHCTTSEE--EEECS------------S
T ss_pred HHhCCCCEEEEeeecccCcc---------------------cCHHHHHHHHHHhCCCceE--EecCC------------C
Confidence 5555 776655433321110 1246788889888 7766 54332 2
Q ss_pred chHHHHHHHHHHHHHHHCCCCcEEEEE------e-cCC-hhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhh
Q 004907 238 PRGMVESAFEFARICRKLDFHNFLFSM------K-ASN-PVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKS 309 (724)
Q Consensus 238 ~~amVeSAle~~~i~e~~~F~diviS~------K-aSn-v~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~~G~IKS 309 (724)
+ +.++.+++.|.+-|.++. + -.+ ....++.++.+.+. .+.|+ .-+|-|.|
T Consensus 129 ~--------~e~~~~~~~G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~-----~~ipv---------ia~GGI~~ 186 (223)
T 1y0e_A 129 V--------EEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQS-----VDAKV---------IAEGNVIT 186 (223)
T ss_dssp H--------HHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHH-----CCSEE---------EEESSCCS
T ss_pred H--------HHHHHHHHcCCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhh-----CCCCE---------EEecCCCC
Confidence 2 223446778876554432 1 110 23345666666666 56665 34566667
Q ss_pred HHHHHHHhhcCCCcee
Q 004907 310 AIGIGTLLQDGLGDTI 325 (724)
Q Consensus 310 aiGiG~LL~~GIGDTI 325 (724)
.--+-.++..| =|-+
T Consensus 187 ~~~~~~~~~~G-ad~v 201 (223)
T 1y0e_A 187 PDMYKRVMDLG-VHCS 201 (223)
T ss_dssp HHHHHHHHHTT-CSEE
T ss_pred HHHHHHHHHcC-CCEE
Confidence 77777777776 3444
No 41
>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*
Probab=84.52 E-value=22 Score=37.19 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=93.4
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
++||.-|- |++..|.+|+++ ++ =||==+-+ .. .++.+.|+++|.|+=+--+
T Consensus 103 ~vpiSIDT-~~~~Va~aAl~aGa~--iINdVsg~-~d------------------------~~m~~v~a~~~~~vVlmh~ 154 (294)
T 2dqw_A 103 GVPVSVDT-RKPEVAEEALKLGAH--LLNDVTGL-RD------------------------ERMVALAARHGVAAVVMHM 154 (294)
T ss_dssp CSCEEEEC-SCHHHHHHHHHHTCS--EEECSSCS-CC------------------------HHHHHHHHHHTCEEEEECC
T ss_pred CCeEEEEC-CCHHHHHHHHHhCCC--EEEECCCC-CC------------------------hHHHHHHHHhCCCEEEEcC
Confidence 89999986 889999999997 44 24432222 11 2477889999999855443
Q ss_pred c-CCCchHH--HhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE-----ecC-ChhHHHHHHHHHHHHhhcCCCCcccc
Q 004907 223 H-GSLSDRI--MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM-----KAS-NPVVMVQAYRLLVAEMYVHGWDYPLH 293 (724)
Q Consensus 223 ~-GSL~~~i--l~~yg~t~~amVeSAle~~~i~e~~~F~diviS~-----KaS-nv~~~v~Ayrlla~~m~~~g~dYPLH 293 (724)
. | .++.+ ...|.|--+.+++...+.++.|++.|+.+|+|-- |+- .-..+++.++.|.+ ..||+=
T Consensus 155 ~eG-~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~IilDPG~Gf~kt~~~n~~ll~~l~~~~~------~g~Pvl 227 (294)
T 2dqw_A 155 PVP-DPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQVVLDPGFGFGKLLEHNLALLRRLDEIVA------LGHPVL 227 (294)
T ss_dssp SSS-CTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEEEECCTTSSCCHHHHHHHHHTHHHHHT------TSSCBE
T ss_pred CCC-CCccccccCccccHHHHHHHHHHHHHHHHHHCCCCcEEEcCCCCcccCHHHHHHHHHHHHHHhc------CCCCEE
Confidence 3 3 23332 1235444477899999999999999999999863 211 11223334433332 589999
Q ss_pred cccccc-------CCC-CCCch-hhHHHHHHHhhcCCCceeEEe
Q 004907 294 LGVTEA-------GEG-EDGRM-KSAIGIGTLLQDGLGDTIRVS 328 (724)
Q Consensus 294 LGVTEA-------G~~-~~G~I-KSaiGiG~LL~~GIGDTIRVS 328 (724)
+|+.-= |.. .+-|. -|++-....+..|. +-|||.
T Consensus 228 ~G~Srksfig~l~g~p~~~~R~~~t~a~~~~a~~~Ga-~IvRvH 270 (294)
T 2dqw_A 228 VGLSRKRTIGELSGVEDPAQRVHGSVAAHLFAVMKGV-RLLRVH 270 (294)
T ss_dssp ECCTTCHHHHHHHTCCSGGGCHHHHHHHHHHHHHTTC-CEEEES
T ss_pred EEeccchhhhhhcCCCchhhhHHHHHHHHHHHHHcCC-cEEEcC
Confidence 998763 221 12333 34455555667776 778764
No 42
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}
Probab=84.30 E-value=2.5 Score=44.40 Aligned_cols=93 Identities=16% Similarity=0.255 Sum_probs=68.5
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+| +.|++|= .| ..-|.+.+++-+++|++ .+..|++ .+++||++|=.+ ++.-+..
T Consensus 188 ~g-d~~l~vD--~n-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~-----~~~iPI~~de~i~~~~~~~~ 258 (384)
T 2pgw_A 188 IG-DARLRLD--AN-EGWSVHDAINMCRKLEKYDIEFIEQPTVSWSIPAMAHVRE-----KVGIPIVADQAAFTLYDVYE 258 (384)
T ss_dssp ST-TCEEEEE--CT-TCCCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHH-----HCSSCEEESTTCCSHHHHHH
T ss_pred cC-CcEEEEe--cC-CCCCHHHHHHHHHHHHhcCCCEEeCCCChhhHHHHHHHHh-----hCCCCEEEeCCcCCHHHHHH
Confidence 56 7788772 22 23456666666666665 4556655 478999999765 6778888
Q ss_pred Hhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 161 VAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 161 a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+++. +|-|.|.|+.+|.-. .+.+++..|+++|+++=+|.
T Consensus 259 ~i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~~~~~~ 299 (384)
T 2pgw_A 259 ICRQRAADMICIGPREIGGIQ----------------------PMMKAAAVAEAAGLKICIHS 299 (384)
T ss_dssp HHHTTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCCEEECC
T ss_pred HHHcCCCCEEEEcchhhCCHH----------------------HHHHHHHHHHHCCCeEeecc
Confidence 8864 999999999998844 36789999999999987763
No 43
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=84.23 E-value=3.4 Score=39.66 Aligned_cols=144 Identities=11% Similarity=0.084 Sum_probs=87.8
Q ss_pred CCCeEEeeccCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhcCCCcceee-cCCC---CH--------
Q 004907 101 EHPIRVQTMTTNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQKNYNIPLVA-DIHF---AP-------- 155 (724)
Q Consensus 101 ~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~~~iPLVA-DIHF---~~-------- 155 (724)
..++.+|+.+-....+.+.+++.+.++-= .++++++.|.+.+..+..+. ...| ++
T Consensus 4 ~~~lg~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r~~~~~ 83 (275)
T 3qc0_A 4 VEGLSINLATIREQCGFAEAVDICLKHGITAIAPWRDQVAAIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAID 83 (275)
T ss_dssp CTTEEEEGGGGTTTCCHHHHHHHHHHTTCCEEECBHHHHHHHCHHHHHHHHHHHTCEESCEEEEECCCCSSHHHHHHHHH
T ss_pred cccceeeeeeccCCCCHHHHHHHHHHcCCCEEEeccccccccCHHHHHHHHHHcCCceEEeecCCCcCCCCHHHHHHHHH
Confidence 35788999888666788887777665421 46688888888888776554 1112 22
Q ss_pred --HHHHHHhh-h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHH
Q 004907 156 --SVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM 231 (724)
Q Consensus 156 --~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il 231 (724)
+-+++.+. . +..|++.||.+.... ..+.+.++++.+.++++.+.|+++|+.+=|=-.++-.+ .-
T Consensus 84 ~~~~~i~~a~~lG~~~v~~~~g~~~~~~----------~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~--~~ 151 (275)
T 3qc0_A 84 DNRRAVDEAAELGADCLVLVAGGLPGGS----------KNIDAARRMVVEGIAAVLPHARAAGVPLAIEPLHPMYA--AD 151 (275)
T ss_dssp HHHHHHHHHHHTTCSCEEEECBCCCTTC----------CCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCGGGT--TT
T ss_pred HHHHHHHHHHHhCCCEEEEeeCCCCCCC----------cCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeECCCccc--CC
Confidence 22333333 3 889999998764311 12456678888999999999999998654332111000 00
Q ss_pred hhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 232 SYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 232 ~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
..+..|+ -+..+++++.|- ++.+-+
T Consensus 152 ~~~~~~~-------~~~~~l~~~~~~-~vg~~~ 176 (275)
T 3qc0_A 152 RACVNTL-------GQALDICETLGP-GVGVAI 176 (275)
T ss_dssp TBSCCCH-------HHHHHHHHHHCT-TEEEEE
T ss_pred ccccCCH-------HHHHHHHHHhCc-ccEEEE
Confidence 0112333 344556677676 777666
No 44
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=83.67 E-value=4.1 Score=43.07 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=68.9
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.||.|=- | ..-+.+.+++-+++|++ .+..+++ .+++||++|=.+ ++.-+..
T Consensus 191 ~G~d~~l~vDa--n-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 262 (391)
T 2qgy_A 191 VGDELPLMLDL--A-VPEDLDQTKSFLKEVSSFNPYWIEEPVDGENISLLTEIKN-----TFNMKVVTGEKQSGLVHFRE 262 (391)
T ss_dssp HCSSSCEEEEC--C-CCSCHHHHHHHHHHHGGGCCSEEECSSCTTCHHHHHHHHH-----HCSSCEEECTTCCSHHHHHH
T ss_pred hCCCCEEEEEc--C-CCCCHHHHHHHHHHHHhcCCCeEeCCCChhhHHHHHHHHh-----hCCCCEEEcCCcCCHHHHHH
Confidence 56677777621 2 22356666777777765 4555655 478999999765 5677777
Q ss_pred Hhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 161 VAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 161 a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
+++. +|-|.|.|..+|.-. ...++++.|+++|+++=+|..
T Consensus 263 ~i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~gi~~~~~~~ 304 (391)
T 2qgy_A 263 LISRNAADIFNPDISGMGGLI----------------------DIIEISNEASNNGIFISPHCW 304 (391)
T ss_dssp HHHTTCCSEECCBTTTSSCHH----------------------HHHHHHHHHHHTTCEECCBCC
T ss_pred HHHcCCCCEEEECcchhCCHH----------------------HHHHHHHHHHHCCCEEeccCC
Confidence 7763 999999999999844 367899999999999876653
No 45
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5
Probab=83.58 E-value=4.8 Score=38.48 Aligned_cols=78 Identities=12% Similarity=0.161 Sum_probs=51.0
Q ss_pred cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCCCchHHHhhcCCCchHHHH
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVE 243 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amVe 243 (724)
+..|++.||..... + ...+.++++.+.++++.+.|+++|+ ||++ |+...+ .|..++.
T Consensus 99 ~~~v~~~~g~~~~~--------~---~~~~~~~~~~~~l~~l~~~a~~~gv--~l~~E~~~~~~---------~~~~~~~ 156 (260)
T 1k77_A 99 CEQVHVMAGVVPAG--------E---DAERYRAVFIDNIRYAADRFAPHGK--RILVEALSPGV---------KPHYLFS 156 (260)
T ss_dssp CSEEECCCCBCCTT--------S---CHHHHHHHHHHHHHHHHHHHGGGTC--EEEECCCCTTT---------STTBSCC
T ss_pred CCEEEECcCCCCCC--------C---CHHHHHHHHHHHHHHHHHHHHHcCC--EEEEEeCCccC---------CCcCccC
Confidence 88899999875321 1 2345667888889999999999986 5676 443211 0111222
Q ss_pred HHHHHHHHHHHCCCCcEEEEE
Q 004907 244 SAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 244 SAle~~~i~e~~~F~diviS~ 264 (724)
+.-+..+++++.|-.++.+-+
T Consensus 157 ~~~~~~~l~~~~~~~~~g~~~ 177 (260)
T 1k77_A 157 SQYQALAIVEEVARDNVFIQL 177 (260)
T ss_dssp SHHHHHHHHHHHCCTTEEEEE
T ss_pred CHHHHHHHHHHhCCCCEEEEe
Confidence 333566778888888888877
No 46
>1chr_A Chloromuconate cycloisomerase; 3.00A {Ralstonia eutropha} PDB: 2chr_A
Probab=83.49 E-value=4.3 Score=42.63 Aligned_cols=96 Identities=18% Similarity=0.153 Sum_probs=67.1
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCC-CCHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIH-FAPSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIH-F~~~lAl~ 160 (724)
+|.+.+++|= .|.. -|.+.+++-+++|++ .+..+++ .+++|+.+|=. +++.-+..
T Consensus 185 ~g~~~~l~vD--an~~-~~~~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~-----~~~iPia~dE~~~~~~~~~~ 256 (370)
T 1chr_A 185 LGSKAYLRVD--VNQA-WDEQVASVYIPELEALGVELIEQPVGRENTQALRRLSD-----NNRVAIMADESLSTLASAFD 256 (370)
T ss_dssp SSTTCCEEEE--CTTC-CCTTHHHHHTHHHHTTTEEEEECCSCTTCHHHHHHHHH-----HSCSEEEESSSCCSHHHHHH
T ss_pred cCCCCEEEEE--CCCC-CCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHh-----hCCCCEEeCCCcCCHHHHHH
Confidence 5666778774 2221 234445555556655 4556655 57899999966 45666667
Q ss_pred Hhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 161 VAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 161 a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
+++. +|-|.|.|...|+-. ...++...|+++|+++=+|.++
T Consensus 257 ~~~~~~~d~v~~k~~~~GGit----------------------~~~~i~~~A~~~g~~~~~~~~~ 299 (370)
T 1chr_A 257 LARDRSVDVFSLKLCNMGGVS----------------------ATQKIAAVAEASGIASYGGTML 299 (370)
T ss_dssp HHTTTSCSEEEECTTTSCSHH----------------------HHHHHHHHHHHHTCEEEECCSC
T ss_pred HHHcCCCCEEEECccccCCHH----------------------HHHHHHHHHHHcCCeEEecCCC
Confidence 7763 999999999999844 3577999999999999777544
No 47
>3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=83.46 E-value=4 Score=43.14 Aligned_cols=96 Identities=19% Similarity=0.205 Sum_probs=67.6
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.+++|= .|. .-+.+.+++-+++|++ .+..+++ .+++|+++|=.+ ++.-+..
T Consensus 191 ~g~~~~l~vD--an~-~~~~~~A~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 262 (383)
T 3i4k_A 191 VGDRVSLRID--INA-RWDRRTALHYLPILAEAGVELFEQPTPADDLETLREITR-----RTNVSVMADESVWTPAEALA 262 (383)
T ss_dssp TTTTSEEEEE--CTT-CSCHHHHHHHHHHHHHTTCCEEESCSCTTCHHHHHHHHH-----HHCCEEEESTTCSSHHHHHH
T ss_pred cCCCCEEEEE--CCC-CCCHHHHHHHHHHHHhcCCCEEECCCChhhHHHHHHHHh-----hCCCCEEecCccCCHHHHHH
Confidence 4666677774 222 2345666655666666 4555555 478999999664 5666667
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
+++ ++|-|.|.|..+|+-. ...++...|+++|+++=+|.+.
T Consensus 263 ~i~~~~~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~~~~~~ 305 (383)
T 3i4k_A 263 VVKAQAADVIALKTTKHGGLL----------------------ESKKIAAIAEAGGLACHGATSL 305 (383)
T ss_dssp HHHHTCCSEEEECTTTTTSHH----------------------HHHHHHHHHHHTTCEEEECCSC
T ss_pred HHHcCCCCEEEEcccccCCHH----------------------HHHHHHHHHHHcCCeEEeCCCC
Confidence 775 4999999999999844 3678999999999998666544
No 48
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=83.34 E-value=4.5 Score=43.64 Aligned_cols=84 Identities=13% Similarity=0.055 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCcceeecC--CCCHHHHHHHhh--hcCccccCCCC
Q 004907 116 DVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADI--HFAPSVALRVAE--CFDKIRVNPGN 174 (724)
Q Consensus 116 Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~iPLVADI--HF~~~lAl~a~~--~vdkiRINPGN 174 (724)
+.+..++-+.+|++ ++..+++++ +.++||++|= .+++.-...+++ +++-|.|.|..
T Consensus 268 t~~~ai~~~~~L~~~~~i~~iEePl~~~d~~~~~~l~~~~---~~~ipIa~dEl~~~~~~~~~~~i~~~a~d~i~ik~~~ 344 (431)
T 2fym_A 268 TSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVL---GDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQ 344 (431)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHH---TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECGGG
T ss_pred CHHHHHHHHHHHHHhCCceEEECCCCcccHHHHHHHHHHh---CCCCeEEeCCcccCCHHHHHHHHHhCCCCEEEECccc
Confidence 56667777777765 666776642 3489999996 467777777776 49999999999
Q ss_pred CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccC
Q 004907 175 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG 224 (724)
Q Consensus 175 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~G 224 (724)
+|.-. ...+++..|+++|+++=+|-++|
T Consensus 345 ~GGit----------------------e~~~i~~~A~~~g~~~~~~h~~g 372 (431)
T 2fym_A 345 IGSLT----------------------ETLAAIKMAKDAGYTAVISHRSG 372 (431)
T ss_dssp TCSHH----------------------HHHHHHHHHHHTTCEEEEECCSS
T ss_pred cCCHH----------------------HHHHHHHHHHHCCCeEEEeCCCC
Confidence 99844 25679999999999998887664
No 49
>3q45_A Mandelate racemase/muconate lactonizing enzyme FA possible chloromuconate cycloisomerase...; (beta/alpha)8-barrel; 3.00A {Cytophaga hutchinsonii} PDB: 3q4d_A
Probab=82.52 E-value=4.6 Score=42.49 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=67.4
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCC-CCHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIH-FAPSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIH-F~~~lAl~ 160 (724)
+|.+.+++|= .|. .-+.+.+++-+++|++ .+..+++ .+++|+.+|=. +++.-+..
T Consensus 181 ~g~~~~l~vD--aN~-~~~~~~A~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 252 (368)
T 3q45_A 181 AGDSITLRID--ANQ-GWSVETAIETLTLLEPYNIQHCEEPVSRNLYTALPKIRQ-----ACRIPIMADESCCNSFDAER 252 (368)
T ss_dssp HCSSSEEEEE--CTT-CBCHHHHHHHHHHHGGGCCSCEECCBCGGGGGGHHHHHH-----TCSSCEEESTTCCSHHHHHH
T ss_pred hCCCCeEEEE--CCC-CCChHHHHHHHHHHhhcCCCEEECCCChhHHHHHHHHHh-----hCCCCEEEcCCcCCHHHHHH
Confidence 5667777774 222 2345555555666655 3445554 68899999965 55666777
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
+++ .+|-|.|.|...|+-. ...++...|+++|+++=+|.+
T Consensus 253 ~~~~~~~d~v~~k~~~~GGit----------------------~~~~i~~~A~~~gi~~~~~~~ 294 (368)
T 3q45_A 253 LIQIQACDSFNLKLSKSAGIT----------------------NALNIIRLAEQAHMPVQVGGF 294 (368)
T ss_dssp HHHTTCCSEEEECTTTTTSHH----------------------HHHHHHHHHHHTTCCEEECCS
T ss_pred HHHcCCCCeEEechhhcCCHH----------------------HHHHHHHHHHHcCCcEEecCc
Confidence 776 4999999999999844 357899999999999977653
No 50
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=81.96 E-value=14 Score=38.18 Aligned_cols=101 Identities=16% Similarity=0.269 Sum_probs=75.2
Q ss_pred CceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------------------HHHHHHHHhhh
Q 004907 87 KTRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------------------ACFEIKNSLVQ 140 (724)
Q Consensus 87 ~Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------------------a~~~I~~~L~~ 140 (724)
....|.+|++.||++.|++|==.+ .-.|.+...+-+.++.+ .++.+++ .+
T Consensus 23 ~~~~i~i~~~~iG~~~~~vIAgpc--~~~~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g~~gl~~l~~--~~ 98 (276)
T 1vs1_A 23 RETVVEVEGVRIGGGSKAVIAGPC--SVESWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGLGLEGLKLLRR--AG 98 (276)
T ss_dssp SCCCEEETTEEEBTTBCEEEEECS--BCCCHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCCTHHHHHHHHH--HH
T ss_pred CCcEEEECCEEECCCCeEEEEecC--CCCCHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCCCHHHHHHHHH--HH
Confidence 345699999999999888888777 66788888888888877 4555555 35
Q ss_pred cCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 141 KNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 141 ~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
+...+|++.++|--..+. ..++.++-+-|--+|+-+ .++++++-..|.||=
T Consensus 99 ~~~Gl~~~te~~d~~~~~-~l~~~vd~~kIgs~~~~n--------------------------~~ll~~~a~~~kPV~ 149 (276)
T 1vs1_A 99 DEAGLPVVTEVLDPRHVE-TVSRYADMLQIGARNMQN--------------------------FPLLREVGRSGKPVL 149 (276)
T ss_dssp HHHTCCEEEECCCGGGHH-HHHHHCSEEEECGGGTTC--------------------------HHHHHHHHHHTCCEE
T ss_pred HHcCCcEEEecCCHHHHH-HHHHhCCeEEECcccccC--------------------------HHHHHHHHccCCeEE
Confidence 567799999998655443 445568888887777754 246677777899993
No 51
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=81.58 E-value=6.8 Score=40.97 Aligned_cols=93 Identities=10% Similarity=0.099 Sum_probs=67.5
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.||+|=- | ..-|.+.+++-+++|++ .+..+++ .+++|+++|=.+ ++.-+..
T Consensus 188 ~G~d~~l~vDa--n-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPI~~dE~~~~~~~~~~ 259 (371)
T 2ovl_A 188 LGDSFPLMVDA--N-MKWTVDGAIRAARALAPFDLHWIEEPTIPDDLVGNARIVR-----ESGHTIAGGENLHTLYDFHN 259 (371)
T ss_dssp HCTTSCEEEEC--T-TCSCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHH-----HHCSCEEECTTCCSHHHHHH
T ss_pred hCCCCeEEEEC--C-CCCCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHh-----hCCCCEEeCCCCCCHHHHHH
Confidence 56677777631 2 22356666666666665 4555655 468999999775 5677777
Q ss_pred Hhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 161 VAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 161 a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+++. +|-|.|.|+.+|.-. .+.+++..|+++|+++=+|
T Consensus 260 ~i~~~~~d~v~ik~~~~GGi~----------------------~~~~i~~~A~~~gi~~~~h 299 (371)
T 2ovl_A 260 AVRAGSLTLPEPDVSNIGGYT----------------------TFRKVAALAEANNMLLTSH 299 (371)
T ss_dssp HHHHTCCSEECCCTTTTTSHH----------------------HHHHHHHHHHHTTCCEEEC
T ss_pred HHHcCCCCEEeeCccccCCHH----------------------HHHHHHHHHHHcCCeEccc
Confidence 7764 999999999998844 3678999999999998664
No 52
>3mqt_A Mandelate racemase/muconate lactonizing protein; PSI-II, NYSGXRC, muconate lactonizing EN structural genomics, protein structure initiative; 2.10A {Shewanella pealeana}
Probab=81.57 E-value=2.6 Score=44.81 Aligned_cols=95 Identities=11% Similarity=0.042 Sum_probs=70.3
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCC-HHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFA-PSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~ 160 (724)
+|.+.|+.|= .|..-.|.+.+++-+++|++ .+..|++ .+++||++|=.+. +.-+..
T Consensus 197 ~G~d~~l~vD--an~~~~~~~~A~~~~~~L~~~~i~~iEeP~~~~~~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 269 (394)
T 3mqt_A 197 IGWDMDMMVD--CLYRWTDWQKARWTFRQLEDIDLYFIEACLQHDDLIGHQKLAA-----AINTRLCGAEMSTTRFEAQE 269 (394)
T ss_dssp HCSSSEEEEE--CTTCCSCHHHHHHHHHHTGGGCCSEEESCSCTTCHHHHHHHHH-----HSSSEEEECTTCCHHHHHHH
T ss_pred hCCCCeEEEE--CCCCCCCHHHHHHHHHHHhhcCCeEEECCCCcccHHHHHHHHh-----hCCCCEEeCCCcCCHHHHHH
Confidence 5777788873 34333377777777777776 4555555 5889999997754 566667
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+++ ++|-|.|.|...|.-. ...++...|+.+|+++=+|.
T Consensus 270 ~l~~~~~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h~ 310 (394)
T 3mqt_A 270 WLEKTGISVVQSDYNRCGGVT----------------------ELLRIMDICEHHNAQLMPHN 310 (394)
T ss_dssp HHHHHCCSEECCCTTTSSCHH----------------------HHHHHHHHHHHHTCEECCCC
T ss_pred HHHcCCCCeEecCccccCCHH----------------------HHHHHHHHHHHcCCEEeccC
Confidence 776 3999999999999844 35779999999999986554
No 53
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=81.28 E-value=4 Score=43.88 Aligned_cols=93 Identities=9% Similarity=0.075 Sum_probs=62.5
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCC-HHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFA-PSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~ 160 (724)
+|.+.|+.|= .| ..-+.+.+++-+++|++ .+..|++ .+++||.+|=.+. +.-+..
T Consensus 198 ~G~d~~l~vD--aN-~~~~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 269 (412)
T 4e4u_A 198 VGSKADLLFG--TH-GQMVPSSAIRLAKRLEKYDPLWFEEPVPPGQEEAIAQVAK-----HTSIPIATGERLTTKYEFHK 269 (412)
T ss_dssp HTTSSEEEEC--CC-SCBCHHHHHHHHHHHGGGCCSEEECCSCSSCHHHHHHHHH-----TCSSCEEECTTCCHHHHHHH
T ss_pred hCCCCeEEEE--CC-CCCCHHHHHHHHHHhhhcCCcEEECCCChhhHHHHHHHHh-----hCCCCEEecCccCCHHHHHH
Confidence 3455555552 12 12345555555555555 4445544 6899999997764 555666
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+++ ++|-|.|.|+..|.-. ...++...|+.+|+++=++
T Consensus 270 ~i~~~a~d~v~~d~~~~GGit----------------------~~~kia~~A~~~gi~v~~h 309 (412)
T 4e4u_A 270 LLQAGGASILQLNVARVGGLL----------------------EAKKIATLAEVHYAQIAPH 309 (412)
T ss_dssp HHHTTCCSEECCCTTTTTSHH----------------------HHHHHHHHHHHTTCEECCC
T ss_pred HHHcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCEEEec
Confidence 665 3999999999998844 3577999999999997444
No 54
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=81.18 E-value=3.3 Score=42.97 Aligned_cols=93 Identities=11% Similarity=0.206 Sum_probs=66.5
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.|++|=- | ..-|.+.+++-+++|++ .+..|++ .+++|+++|=.+ ++.-+..
T Consensus 186 ~g~~~~l~vDa--n-~~~~~~~a~~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~-----~~~iPI~~de~~~~~~~~~~ 257 (359)
T 1mdl_A 186 VGDDFGIMVDY--N-QSLDVPAAIKRSQALQQEGVTWIEEPTLQHDYEGHQRIQS-----KLNVPVQMGENWLGPEEMFK 257 (359)
T ss_dssp HCSSSEEEEEC--T-TCSCHHHHHHHHHHHHHHTCSCEECCSCTTCHHHHHHHHH-----TCSSCEEECTTCCSHHHHHH
T ss_pred hCCCCEEEEEC--C-CCCCHHHHHHHHHHHHHhCCCeEECCCChhhHHHHHHHHH-----hCCCCEEeCCCCCCHHHHHH
Confidence 46666776521 2 22356666666666766 4445544 578999999775 5667777
Q ss_pred Hhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 161 VAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 161 a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+++. +|-|.|.|+.+|.-. .+.++++.|+++|+++=+|
T Consensus 258 ~i~~~~~d~v~ik~~~~GGi~----------------------~~~~i~~~A~~~g~~~~~~ 297 (359)
T 1mdl_A 258 ALSIGACRLAMPDAMKIGGVT----------------------GWIRASALAQQFGIPMSSH 297 (359)
T ss_dssp HHHTTCCSEECCBTTTTTHHH----------------------HHHHHHHHHHHTTCCBCCB
T ss_pred HHHcCCCCEEeecchhhCCHH----------------------HHHHHHHHHHHcCCeEeec
Confidence 7764 999999999998744 3678999999999997666
No 55
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Probab=81.04 E-value=3.4 Score=43.26 Aligned_cols=93 Identities=10% Similarity=0.097 Sum_probs=65.1
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCC--HHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFA--PSVAL 159 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~--~~lAl 159 (724)
+|.+.|+.|= .| ..-|.+.+++-+++|++ .+..+++ .+++|+++|=.+. +.-+.
T Consensus 197 ~g~d~~l~vD--an-~~~~~~~a~~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 268 (382)
T 1rvk_A 197 VGPDIRLMID--AF-HWYSRTDALALGRGLEKLGFDWIEEPMDEQSLSSYKWLSD-----NLDIPVVGPESAAGKHWHRA 268 (382)
T ss_dssp HCTTSEEEEE--CC-TTCCHHHHHHHHHHHHTTTCSEEECCSCTTCHHHHHHHHH-----HCSSCEEECSSCSSHHHHHH
T ss_pred hCCCCeEEEE--CC-CCCCHHHHHHHHHHHHhcCCCEEeCCCChhhHHHHHHHHh-----hCCCCEEEeCCccCcHHHHH
Confidence 4555666652 12 12345555555555555 4455555 4789999998764 56677
Q ss_pred HHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 160 RVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 160 ~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
.+++. +|-|.|.|..+|.-. ...+++..|+++|+++=+|
T Consensus 269 ~~i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~~~~~ 309 (382)
T 1rvk_A 269 EWIKAGACDILRTGVNDVGGIT----------------------PALKTMHLAEAFGMECEVH 309 (382)
T ss_dssp HHHHTTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCCEEEC
T ss_pred HHHHcCCCCEEeeCchhcCCHH----------------------HHHHHHHHHHHcCCeEeec
Confidence 77764 999999999998744 3678999999999999888
No 56
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Probab=80.86 E-value=3 Score=44.43 Aligned_cols=95 Identities=9% Similarity=-0.010 Sum_probs=70.1
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCC-HHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFA-PSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~ 160 (724)
+|.+.|+.|= .|..-.|.+.+++-+++|++ .+..|++ .+++|+++|=.+. +.-+..
T Consensus 202 ~G~d~~l~vD--aN~~~~~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 274 (394)
T 3mkc_A 202 LGHDTDMMVD--YLYRFTDWYEVARLLNSIEDLELYFAEATLQHDDLSGHAKLVE-----NTRSRICGAEMSTTRFEAEE 274 (394)
T ss_dssp HCSSSEEEEE--CTTCCCCHHHHHHHHHHTGGGCCSEEESCSCTTCHHHHHHHHH-----HCSSCBEECTTCCHHHHHHH
T ss_pred hCCCCeEEEe--CCCCCCCHHHHHHHHHHhhhcCCeEEECCCCchhHHHHHHHHh-----hCCCCEEeCCCCCCHHHHHH
Confidence 5677788773 34333377777777777776 4555555 5889999997654 566667
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+++ ++|-|.|.|+..|.-. ...++...|+.+|+++=+|.
T Consensus 275 ~l~~~~~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h~ 315 (394)
T 3mkc_A 275 WITKGKVHLLQSDYNRCGGLT----------------------ELRRITEMATANNVQVMPHN 315 (394)
T ss_dssp HHHTTCCSEECCCTTTTTHHH----------------------HHHHHHHHHHHTTCEECCCC
T ss_pred HHHcCCCCeEecCccccCCHH----------------------HHHHHHHHHHHcCCEEeecC
Confidence 776 3999999999998744 35779999999999985554
No 57
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=80.31 E-value=58 Score=33.75 Aligned_cols=144 Identities=18% Similarity=0.189 Sum_probs=76.4
Q ss_pred HHHHHHhhh-cCccccCCCC-C-----cchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCch
Q 004907 156 SVALRVAEC-FDKIRVNPGN-F-----ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 228 (724)
Q Consensus 156 ~lAl~a~~~-vdkiRINPGN-i-----g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~ 228 (724)
+.|..|.++ +|.|-||.|| + -...-+-...+|-- ......+.+.|-++.|.+++ +.-+-+||..+.. .+
T Consensus 148 ~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGG-slenr~r~~~eiv~avr~~v-~~pv~vris~~~~-~~- 223 (338)
T 1z41_A 148 QAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGG-SPENRYRFLREIIDEVKQVW-DGPLFVRVSASDY-TD- 223 (338)
T ss_dssp HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSS-SHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCC-ST-
T ss_pred HHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCc-chhhhHHHHHHHHHHHHHHc-CCcEEEEecCccc-CC-
Confidence 345566666 9999999886 0 00000000111211 12223344444444555444 4556667765311 00
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEec-------CChhHHHHHHHHHHHHhhcCCCCccccccccccCC
Q 004907 229 RIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA-------SNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE 301 (724)
Q Consensus 229 ~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~Ka-------Snv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~ 301 (724)
-|.+. +.+.+.++.|++.|.+-|.+|--. +.........+.+.+. ++-|+
T Consensus 224 -----~g~~~----~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~-----~~iPV--------- 280 (338)
T 1z41_A 224 -----KGLDI----ADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQ-----ADMAT--------- 280 (338)
T ss_dssp -----TSCCH----HHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH-----HCCEE---------
T ss_pred -----CCCCH----HHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHH-----CCCCE---------
Confidence 13343 457889999999999999988521 1111123334444444 45554
Q ss_pred CCCCchhhHHHHHHHhhcCCCceeE
Q 004907 302 GEDGRMKSAIGIGTLLQDGLGDTIR 326 (724)
Q Consensus 302 ~~~G~IKSaiGiG~LL~~GIGDTIR 326 (724)
.-.|.|.|.--.-.+|.+|--|-|=
T Consensus 281 i~~Ggi~s~~~a~~~l~~G~aD~V~ 305 (338)
T 1z41_A 281 GAVGMITDGSMAEEILQNGRADLIF 305 (338)
T ss_dssp EECSSCCSHHHHHHHHHTTSCSEEE
T ss_pred EEECCCCCHHHHHHHHHcCCceEEe
Confidence 2346677777777788887666543
No 58
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}
Probab=79.85 E-value=6.5 Score=42.30 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=67.6
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhcCCC-cceeecCCC-CHHHHHHHh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQKNYN-IPLVADIHF-APSVALRVA 162 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~~~-iPLVADIHF-~~~lAl~a~ 162 (724)
+|.+.+|+|=- | ..-|.+.+++-+++|++ .+...++ +++.++ +||++|=.+ ++.-+..++
T Consensus 226 vG~d~~l~vDa--n-~~~~~~eai~~~~~L~~~~i~~iEqP~~~~d~~~~~~--l~~~~~~iPIa~dE~~~~~~~~~~~i 300 (428)
T 3bjs_A 226 LGDEVDILTDA--N-TAYTMADARRVLPVLAEIQAGWLEEPFACNDFASYRE--VAKITPLVPIAAGENHYTRFEFGQML 300 (428)
T ss_dssp HCTTSEEEEEC--T-TCCCHHHHHHHHHHHHHTTCSCEECCSCTTCHHHHHH--HTTTCSSSCEEECTTCCSHHHHHHHH
T ss_pred cCCCCEEEEEC--C-CCCCHHHHHHHHHHHHhcCCCEEECCCCccCHHHHHH--HHHhCCCCcEEcCCCcCCHHHHHHHH
Confidence 57777787621 2 23456767776777766 2223333 344677 999999765 567777777
Q ss_pred hh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 163 EC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 163 ~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+. +|-|.|.|..+|.-. ...++++.|+++|+++=+|
T Consensus 301 ~~~~~d~v~ik~~~~GGit----------------------ea~~ia~~A~~~gi~~~~~ 338 (428)
T 3bjs_A 301 DAGAVQVWQPDLSKCGGIT----------------------EGIRIAAMASAYRIPINAH 338 (428)
T ss_dssp TTCCEEEECCBTTTSSCHH----------------------HHHHHHHHHHHTTCCBCCB
T ss_pred HhCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCeEEec
Confidence 63 999999999999844 2577999999999998666
No 59
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=78.96 E-value=4.5 Score=42.67 Aligned_cols=93 Identities=14% Similarity=0.098 Sum_probs=64.3
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCC-HHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFA-PSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~ 160 (724)
+|.+.+|.|=- | ..-+.+.+++-+++|++ .+..|++ .+++||++|=.+. +.-+..
T Consensus 196 ~G~d~~l~vD~--n-~~~~~~~a~~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~-----~~~ipIa~dE~~~~~~~~~~ 267 (392)
T 2poz_A 196 AGPEIELMVDL--S-GGLTTDETIRFCRKIGELDICFVEEPCDPFDNGALKVISE-----QIPLPIAVGERVYTRFGFRK 267 (392)
T ss_dssp HCTTSEEEEEC--T-TCSCHHHHHHHHHHHGGGCEEEEECCSCTTCHHHHHHHHH-----HCSSCEEECTTCCHHHHHHH
T ss_pred cCCCCEEEEEC--C-CCCCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHh-----hCCCCEEecCCcCCHHHHHH
Confidence 45566666521 2 22345556665666655 4555555 4789999998774 566667
Q ss_pred Hhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 161 VAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 161 a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+++. +|-|.|.|..+|.-. ...+++..|+++|+++=+|
T Consensus 268 ~i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~~~~h 307 (392)
T 2poz_A 268 IFELQACGIIQPDIGTAGGLM----------------------ETKKICAMAEAYNMRVAPH 307 (392)
T ss_dssp HHTTTCCSEECCCTTTSSCHH----------------------HHHHHHHHHHTTTCEECCC
T ss_pred HHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeEecC
Confidence 7753 999999999999844 2577999999999987554
No 60
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=78.76 E-value=4.9 Score=42.57 Aligned_cols=93 Identities=10% Similarity=0.071 Sum_probs=66.2
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+-+|.|= .| ..-+.+.+++-+++|++ .+..|++ .+++||++|=.+ ++.-+..
T Consensus 215 ~G~d~~l~vD--an-~~~~~~~ai~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 286 (410)
T 2gl5_A 215 MGDDADIIVE--IH-SLLGTNSAIQFAKAIEKYRIFLYEEPIHPLNSDNMQKVSR-----STTIPIATGERSYTRWGYRE 286 (410)
T ss_dssp HCSSSEEEEE--CT-TCSCHHHHHHHHHHHGGGCEEEEECSSCSSCHHHHHHHHH-----HCSSCEEECTTCCTTHHHHH
T ss_pred cCCCCEEEEE--CC-CCCCHHHHHHHHHHHHhcCCCeEECCCChhhHHHHHHHHh-----hCCCCEEecCCcCCHHHHHH
Confidence 4556667662 12 22356666666666665 5556655 478999999776 5667777
Q ss_pred Hhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 161 VAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 161 a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+++. +|-|.|.|..+|.-. ...+++..|+++|+++=+|
T Consensus 287 ~i~~~~~d~v~ik~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h 326 (410)
T 2gl5_A 287 LLEKQSIAVAQPDLCLCGGIT----------------------EGKKICDYANIYDTTVQVH 326 (410)
T ss_dssp HHHTTCCSEECCCTTTTTHHH----------------------HHHHHHHHHHTTTCEECCC
T ss_pred HHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeEeec
Confidence 7763 999999999998844 3577999999999997554
No 61
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=78.45 E-value=5.3 Score=42.29 Aligned_cols=97 Identities=16% Similarity=0.095 Sum_probs=68.5
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH---------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD---------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVA 162 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~---------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~ 162 (724)
+|.+.+|.|=- | ..-+.+.+++-+++|++ .+..|+++|.+.++++||++|=-+++.-+..++
T Consensus 198 ~g~d~~l~vDa--n-~~~~~~~ai~~~~~l~~~~i~~iE~P~~~d~~~~~~l~~~l~~~g~~iPIa~dE~~~~~~~~~~i 274 (392)
T 3p3b_A 198 AGPAGKIMIDA--N-NAYNLNLTKEVLAALSDVNLYWLEEAFHEDEALYEDLKEWLGQRGQNVLIADGEGLASPHLIEWA 274 (392)
T ss_dssp HCTTCCEEEEC--T-TCCCHHHHHHHHHHTTTSCEEEEECSSSCCHHHHHHHHHHHHHHTCCCEEEECCSSCCTTHHHHH
T ss_pred hCCCCeEEEEC--C-CCCCHHHHHHHHHHHHhcCCCEEecCCcccHHHHHHHHHhhccCCCCccEEecCCCCHHHHHHHH
Confidence 56777787721 2 22356666666666654 455666655555689999999855667777777
Q ss_pred hh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 163 EC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 163 ~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+. +|-|.|.|..+ .-. ...++++.|+++|+++=+|
T Consensus 275 ~~~~~d~v~ik~~~~-Git----------------------~~~~i~~~A~~~gi~~~~h 311 (392)
T 3p3b_A 275 TRGRVDVLQYDIIWP-GFT----------------------HWMELGEKLDAHGLRSAPH 311 (392)
T ss_dssp HTTSCCEECCBTTTB-CHH----------------------HHHHHHHHHHHTTCEECCB
T ss_pred HcCCCCEEEeCcccc-CHH----------------------HHHHHHHHHHHcCCEEEec
Confidence 63 99999999998 422 2567999999999998666
No 62
>3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A*
Probab=78.08 E-value=5.1 Score=42.51 Aligned_cols=96 Identities=5% Similarity=0.018 Sum_probs=66.7
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhh-cCCCcceeecCCCC-HHHHHHHh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQ-KNYNIPLVADIHFA-PSVALRVA 162 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~-~~~~iPLVADIHF~-~~lAl~a~ 162 (724)
+|.+.|++|= .| ..-|.+.+++-+++|++ ....+++ ++ +.+++|+++|=... +.-+..++
T Consensus 192 ~g~d~~l~vD--an-~~~~~~~A~~~~~~l~~~~i~~iEqP~~~~d~~~~~~--l~~~~~~iPIa~dE~i~~~~~~~~~i 266 (389)
T 3ozy_A 192 VGADVEILVD--AN-QSLGRHDALAMLRILDEAGCYWFEEPLSIDDIEGHRI--LRAQGTPVRIATGENLYTRNAFNDYI 266 (389)
T ss_dssp HCTTSEEEEE--CT-TCCCHHHHHHHHHHHHHTTCSEEESCSCTTCHHHHHH--HHTTCCSSEEEECTTCCHHHHHHHHH
T ss_pred cCCCceEEEE--CC-CCcCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHH--HHhcCCCCCEEeCCCCCCHHHHHHHH
Confidence 5667777763 22 22346666666667766 2333333 33 57899999997654 55666676
Q ss_pred h--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 163 E--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 163 ~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+ .+|-|.|.|+..|.-. ...+++..|+++|+++=+|
T Consensus 267 ~~~~~d~v~ik~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h 304 (389)
T 3ozy_A 267 RNDAIDVLQADASRAGGIT----------------------EALAISASAASAHLAWNPH 304 (389)
T ss_dssp HTTCCSEECCCTTTSSCHH----------------------HHHHHHHHHHHTTCEECCC
T ss_pred HcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCEEEec
Confidence 5 3999999999998844 3678999999999998666
No 63
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}
Probab=77.85 E-value=4.4 Score=42.68 Aligned_cols=96 Identities=5% Similarity=0.033 Sum_probs=69.8
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCC-HHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFA-PSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~ 160 (724)
+|.+.|+.|= .|..-.|.+.+++-+++|++ .+..|++ .+++|+++|=... +.-+..
T Consensus 190 ~g~~~~l~vD--an~~~~d~~~A~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 262 (374)
T 3sjn_A 190 AGPEMEVQID--LASKWHTCGHSAMMAKRLEEFNLNWIEEPVLADSLISYEKLSR-----QVSQKIAGGESLTTRYEFQE 262 (374)
T ss_dssp HCSSSEEEEE--CTTTTCSHHHHHHHHHHSGGGCCSEEECSSCTTCHHHHHHHHH-----HCSSEEEECTTCCHHHHHHH
T ss_pred hCCCCeEEEE--CCCCCCCHHHHHHHHHHhhhcCceEEECCCCcccHHHHHHHHh-----hCCCCEEeCCCcCCHHHHHH
Confidence 5777788874 44433457777776777766 4555555 5899999997654 556666
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
+++ .+|-|.|.|+..|.-. ...++...|+++|+++=+|..
T Consensus 263 ~l~~~~~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h~~ 304 (374)
T 3sjn_A 263 FITKSNADIVQPDITRCGGIT----------------------EMKKIYDIAQMNGTQLIPHGF 304 (374)
T ss_dssp HHHHHCCSEECCBTTTSSHHH----------------------HHHHHHHHHHHHTCEECCBCC
T ss_pred HHHcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCEEEecCC
Confidence 775 3999999999998743 357799999999999866554
No 64
>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A
Probab=77.51 E-value=3.7 Score=43.29 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=66.1
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE 163 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~ 163 (724)
+|.+.||.|= .| ..-+.+.+++-+++|++ .+...++ +++.+++|+++|=.+ ++.-+..+++
T Consensus 205 ~g~d~~l~vD--an-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~--l~~~~~iPI~~dE~~~~~~~~~~~i~ 279 (388)
T 2nql_A 205 LGPQAKIAAD--MH-WNQTPERALELIAEMQPFDPWFAEAPVWTEDIAGLEK--VSKNTDVPIAVGEEWRTHWDMRARIE 279 (388)
T ss_dssp HCTTSEEEEE--CC-SCSCHHHHHHHHHHHGGGCCSCEECCSCTTCHHHHHH--HHTSCCSCEEECTTCCSHHHHHHHHT
T ss_pred hCCCCEEEEE--CC-CCCCHHHHHHHHHHHhhcCCCEEECCCChhhHHHHHH--HHhhCCCCEEEeCCcCCHHHHHHHHH
Confidence 5667777773 22 23456666666666665 2223322 334678999999775 6777888886
Q ss_pred h--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 164 C--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 164 ~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
. +|-|.|.|.. |.-. .+.+++..|+++|+++=+|
T Consensus 280 ~~~~d~v~ik~~~-GGit----------------------~~~~i~~~A~~~g~~~~~h 315 (388)
T 2nql_A 280 RCRIAIVQPEMGH-KGIT----------------------NFIRIGALAAEHGIDVIPH 315 (388)
T ss_dssp TSCCSEECCCHHH-HCHH----------------------HHHHHHHHHHHHTCEECCC
T ss_pred cCCCCEEEecCCC-CCHH----------------------HHHHHHHHHHHcCCeEEee
Confidence 4 9999999998 8744 3678999999999987554
No 65
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=77.46 E-value=28 Score=39.03 Aligned_cols=106 Identities=17% Similarity=0.274 Sum_probs=64.9
Q ss_pred ccccchHHHHHHhhhhhhhHHHHHHHHHhcCC-cEEEeeccCCCchHHH--------hhcCCCchHHHHHHHHHHHHHHH
Q 004907 184 QLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR-AVRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRK 254 (724)
Q Consensus 184 ~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~-~IRIGvN~GSL~~~il--------~~yg~t~~amVeSAle~~~i~e~ 254 (724)
-.++|.+ |++.+.+.|.+-.+.|++.|. .|-|=.-||-|-..++ .+||.+.+.-..-++|-++-.++
T Consensus 128 p~~~t~~----ei~~~i~~~~~aA~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~ 203 (671)
T 1ps9_A 128 PHELSHE----EILQLIDNFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRE 203 (671)
T ss_dssp CEECCHH----HHHHHHHHHHHHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHH
T ss_pred CccCCHH----HHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHH
Confidence 3445554 466677778778888888773 5666555776644443 45776655556666777765554
Q ss_pred -CCCCcEEEEEecC--Ch---hHHHHHHHHHHHHhhcCCCCcccccc
Q 004907 255 -LDFHNFLFSMKAS--NP---VVMVQAYRLLVAEMYVHGWDYPLHLG 295 (724)
Q Consensus 255 -~~F~diviS~KaS--nv---~~~v~Ayrlla~~m~~~g~dYPLHLG 295 (724)
.| .++.|++|-| +. -...+-+..+++++++.|.|| ||++
T Consensus 204 ~vG-~~~~v~vrls~~~~~~~g~~~~~~~~~a~~l~~~g~d~-i~v~ 248 (671)
T 1ps9_A 204 RVG-NDFIIIYRLSMLDLVEDGGTFAETVELAQAIEAAGATI-INTG 248 (671)
T ss_dssp HHC-SSSEEEEEEEEECCSTTCCCHHHHHHHHHHHHHHTCSE-EEEE
T ss_pred HcC-CCceEEEEECccccCCCCCCHHHHHHHHHHHHhcCCCE-EEcC
Confidence 33 3456666655 11 112334556777788889998 6764
No 66
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=77.39 E-value=15 Score=39.25 Aligned_cols=128 Identities=15% Similarity=0.194 Sum_probs=86.8
Q ss_pred ceeEEEeeeecCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------------------HHHHHHHHhhhc
Q 004907 88 TRTVMVGNVAIGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------------------ACFEIKNSLVQK 141 (724)
Q Consensus 88 Tr~V~VG~V~IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------------------a~~~I~~~L~~~ 141 (724)
...|.||++.||++++++|==.+. -.|.+...+-+.++.+ .++.+++ .++
T Consensus 92 ~~~i~i~~~~iG~~~~~vIAgpcs--~es~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg~egl~~l~~--~~~ 167 (350)
T 1vr6_A 92 DTVIDLGDVKIGNGYFTIIAGPCS--VEGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLGEKGLEYLRE--AAD 167 (350)
T ss_dssp CCCEECSSCEESTTEEEEEEECSB--CCCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCTHHHHHHHHH--HHH
T ss_pred CCEEEECCEEECCCCeEEEEeCCC--cCCHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCCCHHHHHHHHH--HHH
Confidence 456999999999998888887776 6688888888888776 4556655 355
Q ss_pred CCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 142 NYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 142 ~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
...+|++.++|--..+. .+++.+|-+-|--+|+-+ .++++++-..|.||=+-.
T Consensus 168 e~Gl~~~te~~d~~~~~-~l~~~vd~lkIgAr~~~n--------------------------~~LL~~va~~~kPVilk~ 220 (350)
T 1vr6_A 168 KYGMYVVTEALGEDDLP-KVAEYADIIQIGARNAQN--------------------------FRLLSKAGSYNKPVLLKR 220 (350)
T ss_dssp HHTCEEEEECSSGGGHH-HHHHHCSEEEECGGGTTC--------------------------HHHHHHHHTTCSCEEEEC
T ss_pred HcCCcEEEEeCCHHHHH-HHHHhCCEEEECcccccC--------------------------HHHHHHHHccCCcEEEcC
Confidence 67799999998654443 455668888888777754 235666667899993322
Q ss_pred ccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 222 NHGSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 222 N~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~divi 262 (724)
|- . |++.| +.|.++ +...|-.++++
T Consensus 221 --G~----------~~tl~ei-~~Ave~---i~~~GN~~viL 246 (350)
T 1vr6_A 221 --GF----------MNTIEEF-LLSAEY---IANSGNTKIIL 246 (350)
T ss_dssp --CT----------TCCHHHH-HHHHHH---HHHTTCCCEEE
T ss_pred --CC----------CCCHHHH-HHHHHH---HHHCCCCeEEE
Confidence 21 2 34333 334443 45667667777
No 67
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium binding site, lyase; 1.95A {Ralstonia pickettii} PDB: 3rra_A
Probab=77.19 E-value=3.9 Score=43.89 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=47.6
Q ss_pred hcCCCcceeecCC-CCHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIH-FAPSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIH-F~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++||++|=. +++.-+..+++. +|-|.|.|+..|.-. ...++...|+++|++
T Consensus 225 ~~~~~iPIa~dE~i~~~~~~~~~l~~~a~d~v~~d~~~~GGit----------------------ea~kia~lA~~~gi~ 282 (405)
T 3rr1_A 225 AAHTHLPIAAGERMFSRFDFKRVLEAGGVSILQPDLSHAGGIT----------------------ECVKIAAMAEAYDVA 282 (405)
T ss_dssp HTTCSSCEEECTTCCSHHHHHHHHHHCCCSEECCBTTTTTHHH----------------------HHHHHHHHHHTTTCE
T ss_pred HhcCCCCEEecCCcCCHHHHHHHHHHhCCCeEEEChhhcCCHH----------------------HHHHHHHHHHHcCCE
Confidence 3468999999955 456677777763 999999999998743 357899999999999
Q ss_pred EEEee
Q 004907 217 VRIGT 221 (724)
Q Consensus 217 IRIGv 221 (724)
+=+|.
T Consensus 283 v~~h~ 287 (405)
T 3rr1_A 283 LAPHC 287 (405)
T ss_dssp ECCBC
T ss_pred EEeCC
Confidence 86663
No 68
>2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides}
Probab=77.11 E-value=4.9 Score=42.56 Aligned_cols=97 Identities=9% Similarity=0.083 Sum_probs=67.5
Q ss_pred cCCCCCeEEeeccCCCCC-CHHHHHHHHHHHHH-------------HHHHHHHHhhhc-CCCcceeecCCC-CHHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTK-DVAGTVEEVMRIAD-------------ACFEIKNSLVQK-NYNIPLVADIHF-APSVALRV 161 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~-Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~-~~~iPLVADIHF-~~~lAl~a 161 (724)
+|.+.||.|= .|..-. |.+.+++-+++|++ .+...++ +++ .+++||++|=.+ ++.-+..+
T Consensus 190 ~G~d~~l~vD--an~~~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~--l~~~~~~iPI~~dE~~~~~~~~~~~ 265 (401)
T 2hzg_A 190 LGPDGDLMVD--VGQIFGEDVEAAAARLPTLDAAGVLWLEEPFDAGALAAHAA--LAGRGARVRIAGGEAAHNFHMAQHL 265 (401)
T ss_dssp HCSSSEEEEE--CTTTTTTCHHHHHTTHHHHHHTTCSEEECCSCTTCHHHHHH--HHTTCCSSEEEECTTCSSHHHHHHH
T ss_pred hCCCCeEEEE--CCCCCCCCHHHHHHHHHHHHhcCCCEEECCCCccCHHHHHH--HHhhCCCCCEEecCCcCCHHHHHHH
Confidence 4566677762 222211 66777777777776 2333333 344 678999999765 56777777
Q ss_pred hhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 162 AEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 162 ~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
++. +|-|.|.|..+|.-. ...++++.|+++|+++=+|
T Consensus 266 i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~~~~h 304 (401)
T 2hzg_A 266 MDYGRIGFIQIDCGRIGGLG----------------------PAKRVADAAQARGITYVNH 304 (401)
T ss_dssp HHHSCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHHTCEEEEC
T ss_pred HHCCCCCEEEeCcchhCCHH----------------------HHHHHHHHHHHcCCEEecC
Confidence 764 999999999998744 2567999999999998766
No 69
>4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A*
Probab=76.85 E-value=9.4 Score=40.72 Aligned_cols=95 Identities=12% Similarity=0.081 Sum_probs=63.9
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.++.|= .|. .-+.+.+++-+++|++ .+..+++ .+++|+.+|=.+ ++.-+..
T Consensus 188 ~g~~~~l~vD--aN~-~~~~~~A~~~~~~L~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 259 (393)
T 4dwd_A 188 LGPDAVIGFD--ANN-GYSVGGAIRVGRALEDLGYSWFEEPVQHYHVGAMGEVAQ-----RLDITVSAGEQTYTLQALKD 259 (393)
T ss_dssp HCTTCCEEEE--CTT-CCCHHHHHHHHHHHHHTTCSEEECCSCTTCHHHHHHHHH-----HCSSEEEBCTTCCSHHHHHH
T ss_pred hCCCCeEEEE--CCC-CCCHHHHHHHHHHHHhhCCCEEECCCCcccHHHHHHHHh-----hCCCCEEecCCcCCHHHHHH
Confidence 4556666663 221 2245555555556655 4445554 588999999654 4555555
Q ss_pred Hhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 161 VAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 161 a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
+++. +|-|.|.|+..|.-. ...++...|+++|+++=+|..
T Consensus 260 ~i~~~~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h~~ 300 (393)
T 4dwd_A 260 LILSGVRMVQPDIVKMGGIT----------------------GMMQCAALAHAHGVEFVPHQT 300 (393)
T ss_dssp HHHHTCCEECCCTTTTTHHH----------------------HHHHHHHHHHHHTCEECCCCC
T ss_pred HHHcCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCEEeecCC
Confidence 5544 999999999998744 357899999999999866654
No 70
>3qtp_A Enolase 1; glycolysis, lyase; HET: 2PG; 1.90A {Entamoeba histolytica}
Probab=76.79 E-value=9.3 Score=42.21 Aligned_cols=86 Identities=14% Similarity=0.174 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCcceeecCCC--CHHHHHHHhhh--cCccccCCCC
Q 004907 116 DVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAEC--FDKIRVNPGN 174 (724)
Q Consensus 116 Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~~--vdkiRINPGN 174 (724)
+.+..++-..+|.+ +...+++++ + ++|||+|=.| +++.+..+++. ++.|.|-+.+
T Consensus 280 t~~elid~y~~lle~ypI~~IEDPl~~dD~eg~a~Lt~~l---g-~i~IvGDEl~vTn~~~i~~~Ie~~a~n~IlIKvnq 355 (441)
T 3qtp_A 280 DVDGLIAEYVDYGKHYPIASIEDPFAEDDWAAWNKFTVEH---G-NFQIVGDDLLVTNPARVQMAMDKNACNSVLIKVNQ 355 (441)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHT---T-TSEEEESTTTTTCHHHHHHHHHHTCCSEEEECGGG
T ss_pred CHHHHHHHHHHHhhhcceeeecCCCChHHHHHHHHHHHhc---C-CceEEeccccccCHHHHHHHHHcCCCCEEEecccc
Confidence 45666666666544 677777742 3 6999999665 89998888874 9999999999
Q ss_pred CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCc
Q 004907 175 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLS 227 (724)
Q Consensus 175 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~ 227 (724)
+|.-. ...++++.|+.+|+++=+|-.+|--+
T Consensus 356 iGGIT----------------------Ealkaa~lA~~~G~~vmvsHrsgETe 386 (441)
T 3qtp_A 356 IGTLT----------------------ETFKTIKMAQEKGWGVMASHRSGETE 386 (441)
T ss_dssp TCCHH----------------------HHHHHHHHHHHTTCEEEEECCSSCCS
T ss_pred cccHH----------------------HHHHHHHHHHHcCCeEEEeCCCCCcc
Confidence 99844 24678999999999887776665443
No 71
>4e5t_A Mandelate racemase / muconate lactonizing enzyme, terminal domain protein; aldolase, structural genomics, biology; 2.90A {Labrenzia alexandrii}
Probab=76.62 E-value=3.9 Score=43.70 Aligned_cols=64 Identities=13% Similarity=0.084 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCC-HHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
.+..|++ .+++|+++|=.+. +.-+..+++ ++|-|.|.|+..|.-. ...++
T Consensus 250 ~~~~l~~-----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit----------------------~~~~i 302 (404)
T 4e5t_A 250 DMAEVAR-----YTSIPVATGERLCTKYEFSRVLETGAASILQMNLGRVGGLL----------------------EAKKI 302 (404)
T ss_dssp HHHHHHH-----HCSSCEEECTTCCHHHHHHHHHHHTCCSEECCCTTTSSCHH----------------------HHHHH
T ss_pred HHHHHHh-----hCCCCEEeCCCcCCHHHHHHHHHhCCCCEEecCccccCCHH----------------------HHHHH
Confidence 4445555 5789999997654 556666666 3999999999998844 35789
Q ss_pred HHHHHhcCCcEEEe
Q 004907 207 VEKCKKYGRAVRIG 220 (724)
Q Consensus 207 v~~ake~g~~IRIG 220 (724)
...|+.+|+++=++
T Consensus 303 a~~A~~~gi~~~~h 316 (404)
T 4e5t_A 303 AAMAECHSAQIAPH 316 (404)
T ss_dssp HHHHHHTTCEECCC
T ss_pred HHHHHHcCCEEeec
Confidence 99999999998444
No 72
>4hpn_A Putative uncharacterized protein; enolase, enzyme function initiative, EFI, structural genomic isomerase; 1.60A {Agrobacterium tumefaciens} PDB: 4ggb_A
Probab=76.55 E-value=5.1 Score=41.95 Aligned_cols=97 Identities=11% Similarity=0.138 Sum_probs=62.9
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCC-HHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFA-PSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~ 160 (724)
+|.+.+++|=- |. .-|.+.+++-+++|++ ++..+++ .+++||.+|=+.. ..-+..
T Consensus 185 ~g~~~~l~vDa--N~-~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~-----~~~ipIa~dE~~~~~~~~~~ 256 (378)
T 4hpn_A 185 IGPDMRLMIDA--NH-GYTVTEAITLGDRAAGFGIDWFEEPVVPEQLDAYARVRA-----GQPIPVAGGETWHGRYGMWQ 256 (378)
T ss_dssp HTTTSEEEEEC--TT-CCCHHHHHHHHHHHGGGCCSCEECCSCTTCHHHHHHHHH-----HSSSCEEECTTCCHHHHHHH
T ss_pred cCCcEEEEEec--Cc-ccCHHHHHHHHhhhhhcccchhhcCCCccchhhhHHHHh-----hCCceeeCCcCccchHhHHH
Confidence 45555555531 21 1245555555555555 4555555 6899999998765 334445
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCC
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 225 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 225 (724)
+++ ++|-+.+.|...|.-. ...++...|+++|+++ ++-++||
T Consensus 257 ~i~~~a~d~i~~d~~~~GGit----------------------~~~~ia~~A~~~gi~v-~~h~~~~ 300 (378)
T 4hpn_A 257 ALSAGAVDILQPDLCGCGGFS----------------------EIQKIATLATLHGVRI-VPHVWGT 300 (378)
T ss_dssp HHHTTCCSEECCBTTTTTHHH----------------------HHHHHHHHHHHHTCEE-CCBCCSS
T ss_pred HHHcCCCCEEeeCCeeCCChh----------------------HHHHHHHHHHHcCCeE-EeCCCCc
Confidence 555 4999999999998744 3577999999999987 4434443
No 73
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}
Probab=76.23 E-value=6.2 Score=41.73 Aligned_cols=96 Identities=8% Similarity=0.075 Sum_probs=67.7
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.|++|=- | ..-|.+.+++-+++|++ .+..|+ +.+++|+++|=.+ ++.-+..
T Consensus 186 ~g~d~~l~vDa--n-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~-----~~~~iPIa~dE~~~~~~~~~~ 257 (397)
T 2qde_A 186 VGDDVDLFIDI--N-GAWTYDQALTTIRALEKYNLSKIEQPLPAWDLDGMARLR-----GKVATPIYADESAQELHDLLA 257 (397)
T ss_dssp HCTTSCEEEEC--T-TCCCHHHHHHHHHHHGGGCCSCEECCSCTTCHHHHHHHH-----TTCSSCEEESTTCCSHHHHHH
T ss_pred hCCCCEEEEEC--C-CCCCHHHHHHHHHHHHhCCCCEEECCCChhhHHHHHHHH-----hhCCCCEEEeCCcCCHHHHHH
Confidence 57777776641 2 22356666666666665 344444 4678999999775 5666667
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
+++ .+|-|.|.|..+|.-. ...+++..|+++|+++=+|.+.
T Consensus 258 ~i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~~~~~~~~ 300 (397)
T 2qde_A 258 IINKGAADGLMIKTQKAGGLL----------------------KAQRWLTLARLANLPVICGCMV 300 (397)
T ss_dssp HHHHTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHHTCCEEECCCS
T ss_pred HHHcCCCCEEEEeccccCCHH----------------------HHHHHHHHHHHcCCeEEEecCc
Confidence 776 3999999999998744 2577999999999998777433
No 74
>1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A*
Probab=75.69 E-value=7.9 Score=40.29 Aligned_cols=62 Identities=15% Similarity=0.233 Sum_probs=48.1
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++|+++|=.+ ++.-+..+++. +|-|.|.|..+|.-. ...+++..|+++|++
T Consensus 229 ~~~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~ 286 (368)
T 1sjd_A 229 ARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYL----------------------EARRVHDVCAAHGIP 286 (368)
T ss_dssp HTTCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECTTTTTSHH----------------------HHHHHHHHHHHTTCC
T ss_pred HHhCCCCEEECCCcCCHHHHHHHHHcCCCCEEEecccccCCHH----------------------HHHHHHHHHHHcCCc
Confidence 33688999999765 56777777753 999999999998843 357799999999999
Q ss_pred EEEeecc
Q 004907 217 VRIGTNH 223 (724)
Q Consensus 217 IRIGvN~ 223 (724)
+=+|-+.
T Consensus 287 ~~~~~~~ 293 (368)
T 1sjd_A 287 VWCGGMI 293 (368)
T ss_dssp EEECCCC
T ss_pred EEeCCcc
Confidence 7555443
No 75
>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*
Probab=75.25 E-value=21 Score=37.01 Aligned_cols=114 Identities=15% Similarity=0.214 Sum_probs=73.0
Q ss_pred CCcceeecCCCCHHHHHHHhhh-cCccccCC--CCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 143 YNIPLVADIHFAPSVALRVAEC-FDKIRVNP--GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 143 ~~iPLVADIHF~~~lAl~a~~~-vdkiRINP--GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
.++|+--|- |.+..|.+|+++ ++= ||= |-..| ..+.+.|++++.|+=+
T Consensus 80 ~~v~iSIDT-~~~~Va~~al~aGa~i--INDVs~g~~d--------------------------~~m~~~va~~~~~~vl 130 (270)
T 4hb7_A 80 FDVKISVDT-FRSEVAEACLKLGVDM--INDQWAGLYD--------------------------HRMFQIVAKYDAEIIL 130 (270)
T ss_dssp SSSEEEEEC-SCHHHHHHHHHHTCCE--EEETTTTSSC--------------------------THHHHHHHHTTCEEEE
T ss_pred CCCeEEEEC-CCHHHHHHHHHhccce--eccccccccc--------------------------hhHHHHHHHcCCCeEE
Confidence 689999995 899999999997 653 452 11112 1367888899999955
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCC--CcEEEE-----EecCChhHHHHHHHHHHHHhhc-CCCCcc
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF--HNFLFS-----MKASNPVVMVQAYRLLVAEMYV-HGWDYP 291 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F--~diviS-----~KaSnv~~~v~Ayrlla~~m~~-~g~dYP 291 (724)
==+.|. .+|.+--+.+...-.+.++.|++.|. ++|+|- -|. .-+-|.+|..- .+ ....||
T Consensus 131 MH~~~~------p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPGiGFgKt-----~~~N~~ll~~l-~~~~~lg~P 198 (270)
T 4hb7_A 131 MHNGNG------NRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKT-----RNEEAEVMARL-DELVATEYP 198 (270)
T ss_dssp ECCCSS------CCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCC-----HHHHHHHHTCH-HHHHTTCSC
T ss_pred eccccC------CccccchhHHHHHHHHHHHHHHHcCCCCceEEEeCCCCcccc-----cccHHHHHhhH-HHHhcCCCC
Confidence 444442 13544445666666777889999999 588885 232 22333333221 11 236899
Q ss_pred cccccc
Q 004907 292 LHLGVT 297 (724)
Q Consensus 292 LHLGVT 297 (724)
+=+|+.
T Consensus 199 vLvG~S 204 (270)
T 4hb7_A 199 VLLATS 204 (270)
T ss_dssp BEECCT
T ss_pred EEEEec
Confidence 999974
No 76
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=75.23 E-value=6.5 Score=42.90 Aligned_cols=89 Identities=16% Similarity=0.140 Sum_probs=67.9
Q ss_pred CCHHHHHHHHHH-HHH----------------HHHHHHHHhhhcCCCcceeecCCC--CHHHHHHHhhh--cCccccCCC
Q 004907 115 KDVAGTVEEVMR-IAD----------------ACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAEC--FDKIRVNPG 173 (724)
Q Consensus 115 ~Dv~atv~Qi~~-L~~----------------a~~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~~--vdkiRINPG 173 (724)
-+.+..++-+.+ |++ ++..+++++ +.+||+++|=.| +++-+..+++. ++-|.|.+.
T Consensus 263 ~t~~eai~~~~~ll~~y~i~~IEdPl~~dD~eg~~~L~~~~---~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~ 339 (428)
T 3tqp_A 263 LTSEEMIDRLTEWTKKYPVISIEDGLSENDWAGWKLLTERL---ENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLN 339 (428)
T ss_dssp BCHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHH---TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHH
T ss_pred cCHHHHHHHHHHHHhhcccceEeCCCCcccHHHHHHHHHhc---CCCcceeccccccCCHHHHHHHHHhCCCCEEEeccc
Confidence 356667777777 555 666777642 457889999665 89888888774 999999999
Q ss_pred CCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCch
Q 004907 174 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 228 (724)
Q Consensus 174 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~ 228 (724)
.+|.-. ...++++.|+.+|+++=+|-.+|.-++
T Consensus 340 ~iGGiT----------------------ealkia~lA~~~G~~~~v~H~sGEted 372 (428)
T 3tqp_A 340 QIGTLT----------------------ETLATVGLAKSNKYGVIISHRSGETED 372 (428)
T ss_dssp HHCCHH----------------------HHHHHHHHHHHTTCEEEEECCSBCCSC
T ss_pred ccCCHH----------------------HHHHHHHHHHHcCCeEEEeCCCCCchH
Confidence 999843 256799999999999878887776544
No 77
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=75.20 E-value=37 Score=34.78 Aligned_cols=122 Identities=12% Similarity=0.031 Sum_probs=70.4
Q ss_pred CCCcceeecCCCCHHHHHHHhhh-cCcccc-CCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 142 NYNIPLVADIHFAPSVALRVAEC-FDKIRV-NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 142 ~~~iPLVADIHF~~~lAl~a~~~-vdkiRI-NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
..++|+.+=. -+.+-...|+++ ++.|+| .+-+=...+++ +...++..-+.++++|+.||++|+.++.
T Consensus 74 ~~~~~~~~l~-~~~~~i~~a~~aG~~~v~i~~~~s~~~~~~~----------~~~s~ee~l~~~~~~v~~a~~~G~~V~~ 142 (302)
T 2ftp_A 74 RPGVTYAALA-PNLKGFEAALESGVKEVAVFAAASEAFSQRN----------INCSIKDSLERFVPVLEAARQHQVRVRG 142 (302)
T ss_dssp CTTSEEEEEC-CSHHHHHHHHHTTCCEEEEEEESCHHHHHHH----------HSSCHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCEEEEEe-CCHHHHHHHHhCCcCEEEEEEecCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHCCCeEEE
Confidence 3567776544 377777788887 999997 44431111111 1112233344567799999999999984
Q ss_pred eecc-CCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE--EecCChhHHHHHHHHHHHH
Q 004907 220 GTNH-GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS--MKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 220 GvN~-GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS--~KaSnv~~~v~Ayrlla~~ 282 (724)
.+-. ++-+.. +.+. .+-++++++.+.+.|-+.|.|. .=...|..+.+-.+.+.+.
T Consensus 143 ~l~~~~~~e~~-----~~~~---~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~ 200 (302)
T 2ftp_A 143 YISCVLGCPYD-----GDVD---PRQVAWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASE 200 (302)
T ss_dssp EEECTTCBTTT-----BCCC---HHHHHHHHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTT
T ss_pred EEEEEeeCCcC-----CCCC---HHHHHHHHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHh
Confidence 4322 233321 2221 2567888899999999866655 1123455554444444444
No 78
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=74.86 E-value=3 Score=44.77 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=43.5
Q ss_pred ceeecCCC---CccccccHHHHHHHHHHHh------cCCC-CcEEEEeeeeecCCCCCCCCceeeecC
Q 004907 623 TEYVSCPS---CGRTLFDLQEISAEIREKT------SHLP-GVSIAIMGCIVNGPGEMADADFGYVGG 680 (724)
Q Consensus 623 te~ISCPs---CGRTlfDLq~~~~~Ik~~t------~hLk-gvkIAVMGCIVNGPGEmadAD~GyvGg 680 (724)
.+.++||+ |..-.+|-+.++.++.+.+ ..|| .+||+|=||. |+=|...-+|+|++|.
T Consensus 140 Rni~aC~G~~~C~~a~~Dt~~~a~~l~~~l~~~~~~~~LP~K~kI~vsGCp-n~C~~~~~~Dig~vg~ 206 (386)
T 3or1_B 140 SNIVHTQGWVYCHTPATDASGPVKAVMDELFEEFTSMRLPAIVRVSLACCI-NMCGAVHCSDIGLVGI 206 (386)
T ss_dssp CCCBCCCGGGTCSSCSSCSHHHHHHHHHHTHHHHSCCCSSSCCCEEEESST-TCCSSGGGSSEEEEEE
T ss_pred cceEecCCccccchhHHHHHHHHHHHHHHHHHhhhccccceeeEEeeccCc-cccccccccccccccc
Confidence 36889986 6667788887777765544 2567 7999999995 5556677899999985
No 79
>3v3w_A Starvation sensing protein RSPA; enolase, enzyme function initiative, EFI, lyase; HET: NHE; 1.40A {Cellvibrio japonicus} PDB: 3v4b_A* 4f4r_A 3qkf_A* 3qke_A* 3p93_A* 3ow1_A 3pk7_A* 3rgt_A* 3bsm_A
Probab=74.82 E-value=9.8 Score=40.98 Aligned_cols=94 Identities=9% Similarity=0.036 Sum_probs=68.2
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.||.|= .| .--+.+.+++-+++|++ .+..|++ .+++||++|=.+ ++.-+..
T Consensus 223 vG~d~~l~vD--aN-~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 294 (424)
T 3v3w_A 223 FGPDIHLLHD--VH-HRLTPIEAARLGKALEPYHLFWMEDAVPAENQESFKLIRQ-----HTTTPLAVGEVFNSIHDCRE 294 (424)
T ss_dssp HCSSSEEEEE--CT-TCCCHHHHHHHHHHHGGGCCSEEECCSCCSSTTHHHHHHH-----HCCSCEEECTTCCSGGGTHH
T ss_pred cCCCCcEEEe--CC-CCCCHHHHHHHHHHHHhcCCCEEECCCChHhHHHHHHHHh-----hCCCCEEEccCcCCHHHHHH
Confidence 5777788873 23 23356666666677766 5666666 488999999654 4666666
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+++ ++|-|.|.|+..|.-. ...++...|+++|+++=++.
T Consensus 295 ~i~~ga~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h~ 335 (424)
T 3v3w_A 295 LIQNQWIDYIRTTIVHAGGIS----------------------QMRRIADFASLFHVRTGFHG 335 (424)
T ss_dssp HHHTTCCSEECCCTTTTTHHH----------------------HHHHHHHHHHTTTCEEEECC
T ss_pred HHHcCCCCeEeecchhcCCHH----------------------HHHHHHHHHHHcCCEEEecC
Confidence 775 3999999999998744 35789999999999985554
No 80
>3uj2_A Enolase 1; enzyme function initiative, EFI, lyase; 2.00A {Anaerostipes caccae}
Probab=74.22 E-value=7 Score=42.96 Aligned_cols=74 Identities=15% Similarity=0.107 Sum_probs=58.5
Q ss_pred HHHHHHHHhhhcCCCcceeecCCC--CHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 205 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 205 (724)
++..+++++ +.+|||++|=.| +++-...+++. ++-|.|.+..+|.-. ...+
T Consensus 321 g~~~L~~~~---~~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~~iGGiT----------------------ea~k 375 (449)
T 3uj2_A 321 GWQYMTREL---GDKIQLVGDDLFVTNTERLNKGIKERCGNSILIKLNQIGTVS----------------------ETLE 375 (449)
T ss_dssp HHHHHHHHH---TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCSHH----------------------HHHH
T ss_pred HHHHHHHHh---CCCceEECCcceeCCHHHHHHHHHcCCCCEEEECccccCCHH----------------------HHHH
Confidence 666776642 458999999877 78888888874 999999999999843 2577
Q ss_pred HHHHHHhcCCcEEEeeccCCCch
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSD 228 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~ 228 (724)
+++.|+.+|+++=++-++|.-++
T Consensus 376 ia~lA~~~Gi~~~v~H~sgET~d 398 (449)
T 3uj2_A 376 AIKMAHKAGYTAVVSHRSGETED 398 (449)
T ss_dssp HHHHHHHTTCEEEEECCSBCCSC
T ss_pred HHHHHHHcCCeEEEeCCCCCchH
Confidence 99999999999878887775543
No 81
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Probab=73.99 E-value=6.1 Score=41.18 Aligned_cols=94 Identities=17% Similarity=0.186 Sum_probs=65.4
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.+++|=- | .--|.+.+++-+++|++ .+..+++ .+++|+++|=.+ ++.-+..
T Consensus 185 ~g~~~~l~vDa--n-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~~~~~~~~l~~-----~~~ipIa~dE~~~~~~~~~~ 256 (370)
T 1nu5_A 185 VGDRASVRVDV--N-QGWDEQTASIWIPRLEEAGVELVEQPVPRANFGALRRLTE-----QNGVAILADESLSSLSSAFE 256 (370)
T ss_dssp HGGGCEEEEEC--T-TCCCHHHHHHHHHHHHHHTCCEEECCSCTTCHHHHHHHHH-----HCSSEEEESTTCCSHHHHHH
T ss_pred cCCCCEEEEEC--C-CCCCHHHHHHHHHHHHhcCcceEeCCCCcccHHHHHHHHH-----hCCCCEEeCCCCCCHHHHHH
Confidence 44455665531 2 12355666666666665 4455555 478999999765 5677777
Q ss_pred Hhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 161 VAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 161 a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+++. +|-|.|.|..+|.-. ...+++..|+++|+++=+|.
T Consensus 257 ~i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~~~~~~ 297 (370)
T 1nu5_A 257 LARDHAVDAFSLKLCNMGGIA----------------------NTLKVAAVAEAAGISSYGGT 297 (370)
T ss_dssp HHHTTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHHTCEEEECC
T ss_pred HHHhCCCCEEEEchhhcCCHH----------------------HHHHHHHHHHHcCCcEEecC
Confidence 7774 999999999998844 36789999999999986654
No 82
>3mwc_A Mandelate racemase/muconate lactonizing protein; enolase, structural genomics, protein structure initiative, nysgrc; 1.80A {Kosmotoga olearia}
Probab=73.75 E-value=6.5 Score=42.01 Aligned_cols=93 Identities=14% Similarity=0.148 Sum_probs=63.9
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.+++|= .|..- |.+. ++-+.+|++ .+..+++ .+++||.+|=.+ ++.-+..
T Consensus 202 ~G~~~~L~vD--aN~~w-~~~~-~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 272 (400)
T 3mwc_A 202 VGDHFPLWTD--ANSSF-ELDQ-WETFKAMDAAKCLFHEQPLHYEALLDLKELGE-----RIETPICLDESLISSRVAEF 272 (400)
T ss_dssp HCTTSCEEEE--CTTCC-CGGG-HHHHHHHGGGCCSCEESCSCTTCHHHHHHHHH-----HSSSCEEESTTCCSHHHHHH
T ss_pred cCCCCEEEEe--CCCCC-CHHH-HHHHHHHHhcCCCEEeCCCChhhHHHHHHHHh-----hCCCCEEEeCCcCCHHHHHH
Confidence 5677788773 23222 2333 555566655 4445555 588999999664 4566666
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+++ ++|-|.|.|+..|+-. ...++...|+++|+++=+|.
T Consensus 273 ~~~~~~~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~~~~ 313 (400)
T 3mwc_A 273 VAKLGISNIWNIKIQRVGGLL----------------------EAIKIYKIATDNGIKLWGGT 313 (400)
T ss_dssp HHHTTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCEEEECC
T ss_pred HHhcCCCCEEEEcchhhCCHH----------------------HHHHHHHHHHHcCCEEEecC
Confidence 775 4999999999998744 35789999999999985553
No 83
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=73.74 E-value=8.5 Score=40.35 Aligned_cols=97 Identities=10% Similarity=0.019 Sum_probs=65.9
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhhh--
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC-- 164 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~~-- 164 (724)
+|.+.||.|= .| ..-|.+.+++-+++|++ .+...++ +++.+++|+++|=.+ ++.-+..+++.
T Consensus 186 ~g~d~~l~vD--an-~~~~~~~a~~~~~~l~~~~i~iE~P~~~~~~~~~--l~~~~~iPI~~de~i~~~~~~~~~i~~~~ 260 (379)
T 2rdx_A 186 LEPGEKAMAD--AN-QGWRVDNAIRLARATRDLDYILEQPCRSYEECQQ--VRRVADQPMKLDECVTGLHMAQRIVADRG 260 (379)
T ss_dssp SCTTCEEEEE--CT-TCSCHHHHHHHHHHTTTSCCEEECCSSSHHHHHH--HHTTCCSCEEECTTCCSHHHHHHHHHHTC
T ss_pred cCCCCEEEEE--CC-CCCCHHHHHHHHHHHHhCCeEEeCCcCCHHHHHH--HHhhCCCCEEEeCCcCCHHHHHHHHHcCC
Confidence 5667777662 12 22355555555555543 1122222 344678999999765 57777777764
Q ss_pred cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+|-|.|.|+.+|.-. .+.+++..|+++|+++=+|-
T Consensus 261 ~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~~~~~~ 295 (379)
T 2rdx_A 261 AEICCLKISNLGGLS----------------------KARRTRDFLIDNRMPVVAED 295 (379)
T ss_dssp CSEEEEETTTTTSHH----------------------HHHHHHHHHHHTTCCEEEEC
T ss_pred CCEEEEeccccCCHH----------------------HHHHHHHHHHHcCCeEEEee
Confidence 999999999998844 36789999999999997773
No 84
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=73.66 E-value=4.5 Score=42.75 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=49.1
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCC-HHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
.+..|++ .+++||++|=.+. +.-+..+++. +|-|.|.|..+|.-. ...++
T Consensus 257 ~~~~l~~-----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit----------------------e~~~i 309 (407)
T 2o56_A 257 QMKQVAD-----KVNIPLAAGERIYWRWGYRPFLENGSLSVIQPDICTCGGIT----------------------EVKKI 309 (407)
T ss_dssp HHHHHHH-----HCCSCEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHH----------------------HHHHH
T ss_pred HHHHHHH-----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEecCccccCCHH----------------------HHHHH
Confidence 4455555 4789999998764 5666677753 999999999998844 25779
Q ss_pred HHHHHhcCCcEEEe
Q 004907 207 VEKCKKYGRAVRIG 220 (724)
Q Consensus 207 v~~ake~g~~IRIG 220 (724)
+..|+++|+++=+|
T Consensus 310 ~~~A~~~g~~~~~h 323 (407)
T 2o56_A 310 CDMAHVYDKTVQIH 323 (407)
T ss_dssp HHHHHTTTCEECCC
T ss_pred HHHHHHcCCeEeec
Confidence 99999999987554
No 85
>2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A*
Probab=73.54 E-value=4.9 Score=41.84 Aligned_cols=94 Identities=15% Similarity=0.257 Sum_probs=65.2
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHH-HHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTV-EEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVAL 159 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv-~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl 159 (724)
+|.+.|++|=- | ..-|.+.++ +-+++|++ .+..+++ .+++|+++|=.+ ++.-+.
T Consensus 182 ~g~~~~l~vDa--n-~~~~~~~a~~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPI~~dE~~~~~~~~~ 253 (369)
T 2p8b_A 182 VGNDIAIRVDV--N-QGWKNSANTLTALRSLGHLNIDWIEQPVIADDIDAMAHIRS-----KTDLPLMIDEGLKSSREMR 253 (369)
T ss_dssp HCTTSEEEEEC--T-TTTBSHHHHHHHHHTSTTSCCSCEECCBCTTCHHHHHHHHH-----TCCSCEEESTTCCSHHHHH
T ss_pred hCCCCeEEEEC--C-CCCCHHHHHHHHHHHHHhCCCcEEECCCCcccHHHHHHHHH-----hCCCCEEeCCCCCCHHHHH
Confidence 56677776642 2 122344454 55555554 4455554 578999999765 677777
Q ss_pred HHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 160 RVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 160 ~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
.+++ .+|-|.|.|+.+|.-. ...++...|+++|+++=+|.
T Consensus 254 ~~i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~~~~~~ 295 (369)
T 2p8b_A 254 QIIKLEAADKVNIKLMKCGGIY----------------------PAVKLAHQAEMAGIECQVGS 295 (369)
T ss_dssp HHHHHTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCEEEECC
T ss_pred HHHHhCCCCEEEeecchhCCHH----------------------HHHHHHHHHHHcCCcEEecC
Confidence 7777 4999999999998744 36789999999999985553
No 86
>1w6t_A Enolase; bacterial infection, surface protein, moonlighting protein, glycolysis, phosphopyruvate hydratase, lyase; HET: 2PE; 2.10A {Streptococcus pneumoniae} SCOP: c.1.11.1 d.54.1.1 PDB: 1iyx_A
Probab=73.51 E-value=8.4 Score=41.83 Aligned_cols=84 Identities=12% Similarity=0.129 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCcceeecC--CCCHHHHHHHhh--hcCccccCCC
Q 004907 115 KDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADI--HFAPSVALRVAE--CFDKIRVNPG 173 (724)
Q Consensus 115 ~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~iPLVADI--HF~~~lAl~a~~--~vdkiRINPG 173 (724)
-+.+..++-+.+|.+ ++..+++++ +.++||++|= .+++.-...+++ +++-|.|.|.
T Consensus 279 ~t~~eai~~~~~l~~~~~i~~iEePl~~~d~~~~~~l~~~~---~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~ 355 (444)
T 1w6t_A 279 RTSAEQIDYLEELVNKYPIITIEDGMDENDWDGWKALTERL---GKKVQLVGDDFFVTNTDYLARGIQEGAANSILIKVN 355 (444)
T ss_dssp ECHHHHHHHHHHHHHHSCEEEEESCSCTTCHHHHHHHHHHH---TTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHH
T ss_pred CCHHHHHHHHHHHHHhCCcEEEECCCChhhHHHHHHHHHhh---CCCCeEEeCCcccCCHHHHHHHHHcCCCCEEEEccc
Confidence 456777777777764 666776642 3389999996 567777767775 4999999999
Q ss_pred CCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 174 NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 174 Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
.+|.-. ...+++..|+++|+++=+|-++
T Consensus 356 ~~GGit----------------------ea~~ia~lA~~~g~~v~~~h~~ 383 (444)
T 1w6t_A 356 QIGTLT----------------------ETFEAIEMAKEAGYTAVVSHRS 383 (444)
T ss_dssp HHCSHH----------------------HHHHHHHHHHHTTCEEEEECCS
T ss_pred ccCCHH----------------------HHHHHHHHHHHCCCeEEecCCC
Confidence 998844 2567999999999999887655
No 87
>2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A*
Probab=73.47 E-value=7.3 Score=41.20 Aligned_cols=91 Identities=9% Similarity=0.114 Sum_probs=66.6
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.||.|= .| ..-+.+.+++-+++|++ .+..|++ .+++|+++|=.+ ++.-+..
T Consensus 204 vg~d~~l~vD--an-~~~~~~~a~~~~~~l~~~~i~~iE~P~~~~~~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 275 (393)
T 2og9_A 204 LGDAVPLMVD--AN-QQWDRPTAQRMCRIFEPFNLVWIEEPLDAYDHEGHAALAL-----QFDTPIATGEMLTSAAEHGD 275 (393)
T ss_dssp HCTTSCEEEE--CT-TCCCHHHHHHHHHHHGGGCCSCEECCSCTTCHHHHHHHHH-----HCSSCEEECTTCCSHHHHHH
T ss_pred cCCCCEEEEE--CC-CCCCHHHHHHHHHHHHhhCCCEEECCCCcccHHHHHHHHH-----hCCCCEEeCCCcCCHHHHHH
Confidence 5777888772 22 23356666666677765 4555655 478999999765 6777777
Q ss_pred Hhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 161 VAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 161 a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
+++. +|-|.|.|..+|.-. ...++++.|+++|+++=
T Consensus 276 ~i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~gi~~~ 313 (393)
T 2og9_A 276 LIRHRAADYLMPDAPRVGGIT----------------------PFLKIASLAEHAGLMLA 313 (393)
T ss_dssp HHHTTCCSEECCCHHHHTSHH----------------------HHHHHHHHHHHTTCEEC
T ss_pred HHHCCCCCEEeeCccccCCHH----------------------HHHHHHHHHHHcCCEEe
Confidence 7764 999999999998743 35779999999999864
No 88
>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*
Probab=73.26 E-value=15 Score=38.92 Aligned_cols=113 Identities=10% Similarity=0.077 Sum_probs=71.3
Q ss_pred CCCcceeec----CCCCHHHHHHHhhhcCccc--cCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC
Q 004907 142 NYNIPLVAD----IHFAPSVALRVAECFDKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 215 (724)
Q Consensus 142 ~~~iPLVAD----IHF~~~lAl~a~~~vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 215 (724)
.+++||+-| -=+++.++.+|+++....| ||.-|-. ++..+...|+++|.
T Consensus 127 ~~~vPlsIDg~~~~T~~~eV~eaAleagag~~~lINsv~~~-------------------------~~~~m~~laa~~g~ 181 (323)
T 4djd_D 127 AVGVPLVVVGCGDVEKDHEVLEAVAEAAAGENLLLGNAEQE-------------------------NYKSLTAACMVHKH 181 (323)
T ss_dssp HCCSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEEBTT-------------------------BCHHHHHHHHHHTC
T ss_pred hCCceEEEECCCCCCCCHHHHHHHHHhcCCCCCeEEECCcc-------------------------cHHHHHHHHHHhCC
Confidence 478999999 3367889999999854333 6754432 23468889999999
Q ss_pred cEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCC--CcEEEEEec----CChhHHHHHHHHHHHH-h-hcCC
Q 004907 216 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDF--HNFLFSMKA----SNPVVMVQAYRLLVAE-M-YVHG 287 (724)
Q Consensus 216 ~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F--~diviS~Ka----Snv~~~v~Ayrlla~~-m-~~~g 287 (724)
|+=+-.+ .+ ++-+.+.++.|.++|+ +||++--=. .+....++..+.+..- + ....
T Consensus 182 ~vVlmh~-----~d------------~~~~~~l~~~a~~~GI~~e~IIlDPg~g~fgk~~e~~l~~l~~ir~~al~~~~~ 244 (323)
T 4djd_D 182 NIIARSP-----LD------------INICKQLNILINEMNLPLDHIVIDPSIGGLGYGIEYSFSIMERIRLGALQGDKM 244 (323)
T ss_dssp EEEEECS-----SC------------HHHHHHHHHHHHTTTCCGGGEEEECCCCCTTTTHHHHHHHHHHHHHHHHHTCGG
T ss_pred eEEEEcc-----ch------------HHHHHHHHHHHHHcCCCHHHEEEeCCCccccCCHHHHHHHHHHHHHHhhccccc
Confidence 9933221 11 3455567789999999 899985433 2333333333333320 1 0123
Q ss_pred CCccccccc
Q 004907 288 WDYPLHLGV 296 (724)
Q Consensus 288 ~dYPLHLGV 296 (724)
..||+=+|+
T Consensus 245 lg~PvL~Gv 253 (323)
T 4djd_D 245 LSMPVICTV 253 (323)
T ss_dssp GCSCBEEEH
T ss_pred CCCCEEEec
Confidence 689999996
No 89
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Probab=72.98 E-value=5.3 Score=42.61 Aligned_cols=65 Identities=6% Similarity=-0.073 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCC-HHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
.+..|++ .+++|+.+|=.+. +.-+..+++ ++|-|.+.|...|.-. ...++
T Consensus 252 ~~~~l~~-----~~~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d~~~~GGit----------------------~~~ki 304 (400)
T 4dxk_A 252 SLTRYAA-----VSPAPISASETLGSRWAFRDLLETGAAGVVMLDISWCGGLS----------------------EARKI 304 (400)
T ss_dssp GHHHHHH-----HCSSCEEECTTCCHHHHHHHHHHTTCCCEEEECTTTTTHHH----------------------HHHHH
T ss_pred HHHHHHH-----hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeCccccCCHH----------------------HHHHH
Confidence 4556655 5889999997654 555666666 3999999999998743 35779
Q ss_pred HHHHHhcCCcEEEee
Q 004907 207 VEKCKKYGRAVRIGT 221 (724)
Q Consensus 207 v~~ake~g~~IRIGv 221 (724)
...|+.+|+++=++.
T Consensus 305 a~~A~~~gi~~~~h~ 319 (400)
T 4dxk_A 305 ASMAEAWHLPVAPHX 319 (400)
T ss_dssp HHHHHHTTCCEEEC-
T ss_pred HHHHHHcCCEEEecC
Confidence 999999999997754
No 90
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme function initiative, lyase; 1.45A {Caulobacter crescentus} PDB: 4gme_A* 4fi4_A 3thu_A
Probab=72.98 E-value=8 Score=41.68 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=66.9
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.||.|= .| .--+.+.+++-+++|++ .+..|++ .+++||++|=.+ ++.-+..
T Consensus 224 ~G~d~~l~vD--aN-~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 295 (425)
T 3vcn_A 224 LGWDVHLLHD--VH-HRLTPIEAARLGKDLEPYRLFWLEDSVPAENQAGFRLIRQ-----HTTTPLAVGEIFAHVWDAKQ 295 (425)
T ss_dssp HCSSSEEEEE--CT-TCCCHHHHHHHHHHHGGGCCSEEECCSCCSSTTHHHHHHH-----HCCSCEEECTTCCSGGGTHH
T ss_pred cCCCCEEEEE--CC-CCCCHHHHHHHHHHHHhcCCCEEECCCChhhHHHHHHHHh-----cCCCCEEeCCCcCCHHHHHH
Confidence 5677788773 22 22356666666677766 5666666 588999999654 4666667
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+++ ++|-|.|.|+..|.-. ...++...|+++|+++=++
T Consensus 296 ~i~~~a~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h 335 (425)
T 3vcn_A 296 LIEEQLIDYLRATVLHAGGIT----------------------NLKKIAAFADLHHVKTGCH 335 (425)
T ss_dssp HHHTTCCSEECCCTTTTTHHH----------------------HHHHHHHHHGGGTCEECCC
T ss_pred HHHcCCCCeEecChhhcCCHH----------------------HHHHHHHHHHHcCCEEeec
Confidence 776 3999999999998744 3577999999999987333
No 91
>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A
Probab=72.97 E-value=25 Score=36.64 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=60.5
Q ss_pred HHHHHHHHHhcCCcEE--EeeccCCCchHHHhhcC-----CCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHH
Q 004907 203 FSPLVEKCKKYGRAVR--IGTNHGSLSDRIMSYYG-----DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQA 275 (724)
Q Consensus 203 ~~~vv~~ake~g~~IR--IGvN~GSL~~~il~~yg-----~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~A 275 (724)
..+.|+...+.|||+= ||.+ +... ...| ...++-.+.+++-++.+++.|=+=|++-+ ++.- .
T Consensus 131 ~~~~i~~l~~~GIpv~gHlglt----Pq~~-~~~gg~~vqgrt~~~a~~~i~rA~a~~eAGA~~ivlE~----vp~~--~ 199 (275)
T 3vav_A 131 LAETVRFLVERAVPVCAHVGLT----PQSV-HAFGGFKVQGKTEAGAAQLLRDARAVEEAGAQLIVLEA----VPTL--V 199 (275)
T ss_dssp GHHHHHHHHHTTCCEEEEEESC----GGGH-HHHC---CCCCSHHHHHHHHHHHHHHHHHTCSEEEEES----CCHH--H
T ss_pred HHHHHHHHHHCCCCEEEecCCC----ceEE-eccCCeEEEcCCHHHHHHHHHHHHHHHHcCCCEEEecC----CCHH--H
Confidence 3456777778999973 4443 3222 2222 12345569999999999999999999987 3332 4
Q ss_pred HHHHHHHhhcCCCCccccccccccCCCCCCch
Q 004907 276 YRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRM 307 (724)
Q Consensus 276 yrlla~~m~~~g~dYPLHLGVTEAG~~~~G~I 307 (724)
.+.++++ .+-|+ +|+ =||..-||-|
T Consensus 200 a~~It~~-----l~iP~-igI-GaG~~cdgQv 224 (275)
T 3vav_A 200 AAEVTRE-----LSIPT-IGI-GAGAECSGQV 224 (275)
T ss_dssp HHHHHHH-----CSSCE-EEE-SSCSCSSEEE
T ss_pred HHHHHHh-----CCCCE-EEE-ccCCCCCcee
Confidence 5677888 78898 887 6788888865
No 92
>1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A*
Probab=72.71 E-value=12 Score=39.42 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=66.0
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE 163 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~ 163 (724)
+|.+.++.|=- | ..-|.+.+++-+++|++ .+...++ +++.+++||++|=.+ ++.-+..+++
T Consensus 207 ~g~~~~l~vDa--n-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~--l~~~~~iPIa~dE~~~~~~~~~~~i~ 281 (392)
T 1tzz_A 207 IGKDAQLAVDA--N-GRFNLETGIAYAKMLRDYPLFWYEEVGDPLDYALQAA--LAEFYPGPMATGENLFSHQDARNLLR 281 (392)
T ss_dssp HTTTCEEEEEC--T-TCCCHHHHHHHHHHHTTSCCSEEECCSCTTCHHHHHH--HTTTCCSCEEECTTCCSHHHHHHHHH
T ss_pred cCCCCeEEEEC--C-CCCCHHHHHHHHHHHHHcCCCeecCCCChhhHHHHHH--HHhhCCCCEEECCCCCCHHHHHHHHH
Confidence 56677777621 2 22356666666666655 2223333 344678999999876 5666666666
Q ss_pred ------hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc---EEEe
Q 004907 164 ------CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA---VRIG 220 (724)
Q Consensus 164 ------~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~---IRIG 220 (724)
.+|-|.|.|..+|.-. ...+++..|+++|++ +=+|
T Consensus 282 ~~~~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~gi~~~~~~~~ 325 (392)
T 1tzz_A 282 YGGMRPDRDWLQFDCALSYGLC----------------------EYQRTLEVLKTHGWSPSRCIPH 325 (392)
T ss_dssp HSCCCTTTCEECCCTTTTTCHH----------------------HHHHHHHHHHHTTCCGGGBCCS
T ss_pred cCCCccCCcEEEECccccCCHH----------------------HHHHHHHHHHHCCCCCceEeec
Confidence 7999999999998844 357799999999998 6555
No 93
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=72.50 E-value=4.5 Score=42.75 Aligned_cols=93 Identities=18% Similarity=0.243 Sum_probs=62.6
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCC-HHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFA-PSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~ 160 (724)
+|.+-+|.|= .| ..-+.+.+++-+++|++ .+..+++ .+++||++|=.+. +.-+..
T Consensus 206 vG~d~~l~vD--an-~~~~~~~ai~~~~~l~~~~i~~iE~P~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 277 (403)
T 2ox4_A 206 VGPDVDIIVE--NH-GHTDLVSAIQFAKAIEEFNIFFYEEINTPLNPRLLKEAKK-----KIDIPLASGERIYSRWGFLP 277 (403)
T ss_dssp HCTTSEEEEE--CT-TCSCHHHHHHHHHHHGGGCEEEEECCSCTTSTHHHHHHHH-----TCCSCEEECTTCCHHHHHHH
T ss_pred hCCCCeEEEE--CC-CCCCHHHHHHHHHHHHhhCCCEEeCCCChhhHHHHHHHHH-----hCCCCEEecCCcCCHHHHHH
Confidence 3455555552 11 22345555555555554 4555555 5789999998774 556667
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+++ .+|-|.|.|..+|.-. ...+++..|+++|+++=+|
T Consensus 278 ~i~~~~~d~v~ik~~~~GGit----------------------e~~~i~~~A~~~g~~~~~h 317 (403)
T 2ox4_A 278 FLEDRSIDVIQPDLGTCGGFT----------------------EFKKIADMAHIFEVTVQAH 317 (403)
T ss_dssp HHHTTCCSEECCCHHHHTHHH----------------------HHHHHHHHHHHTTCEECCC
T ss_pred HHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCEEeec
Confidence 775 3999999999998743 2577999999999997554
No 94
>3i6e_A Muconate cycloisomerase I; structural genomics, NYSGXRC, targer 9468A, muconate lactonizing enzyme, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi} PDB: 3i6t_A
Probab=72.01 E-value=5.2 Score=42.41 Aligned_cols=60 Identities=17% Similarity=0.163 Sum_probs=46.0
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++||.+|=.+ ++.-+..+++ ++|-|.|.|...|.-. ...++...|+++|++
T Consensus 239 ~~~~~iPIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit----------------------~~~~i~~~A~~~gi~ 296 (385)
T 3i6e_A 239 RGLTDVPLLADESVYGPEDMVRAAHEGICDGVSIKIMKSGGLT----------------------RAQTVARIAAAHGLM 296 (385)
T ss_dssp HTTCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCE
T ss_pred HHhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEecccccCCHH----------------------HHHHHHHHHHHcCCE
Confidence 44689999999654 4555666665 4999999999998743 357799999999999
Q ss_pred EEEee
Q 004907 217 VRIGT 221 (724)
Q Consensus 217 IRIGv 221 (724)
+=+|-
T Consensus 297 ~~~~~ 301 (385)
T 3i6e_A 297 AYGGD 301 (385)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 85543
No 95
>3fcp_A L-Ala-D/L-Glu epimerase, A muconate lactonizing enzyme; structural genomics, nysgrc,target 9450E, PSI-2; 1.80A {Klebsiella pneumoniae subsp}
Probab=71.97 E-value=7.2 Score=41.22 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=63.6
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.+++|= .|. .-+.+.+++-+.+|++ ++..+++ .+++||.+|=.+ +..-+..
T Consensus 190 ~g~~~~l~vD--aN~-~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~-----~~~ipIa~dE~~~~~~~~~~ 261 (381)
T 3fcp_A 190 LGDRASIRVD--VNQ-AWDAATGAKGCRELAAMGVDLIEQPVSAHDNAALVRLSQ-----QIETAILADEAVATAYDGYQ 261 (381)
T ss_dssp TCTTCEEEEE--CTT-CBCHHHHHHHHHHHHHTTCSEEECCBCTTCHHHHHHHHH-----HSSSEEEESTTCCSHHHHHH
T ss_pred cCCCCeEEEE--CCC-CCCHHHHHHHHHHHhhcCccceeCCCCcccHHHHHHHHH-----hCCCCEEECCCcCCHHHHHH
Confidence 4545555553 121 1234555555566665 4555555 578999999664 4555556
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
+++ ++|-|.|.|...|+-. ...++...|+++|+++=+|.+.
T Consensus 262 ~~~~~a~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~~~~~~ 304 (381)
T 3fcp_A 262 LAQQGFTGAYALKIAKAGGPN----------------------SVLALARVAQAAGIGLYGGTML 304 (381)
T ss_dssp HHHTTCCSEEEECHHHHTSTT----------------------HHHHHHHHHHHHTCEEEECCSC
T ss_pred HHHcCCCCEEEecccccCCHH----------------------HHHHHHHHHHHcCCceecCCCC
Confidence 665 4999999999998744 3678999999999999665443
No 96
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=71.81 E-value=9 Score=41.83 Aligned_cols=83 Identities=13% Similarity=0.068 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCcceeecCCC--CHHHHHHHhhh--cCccccCCCC
Q 004907 116 DVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAEC--FDKIRVNPGN 174 (724)
Q Consensus 116 Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~~--vdkiRINPGN 174 (724)
+.+..++.+.++.+ ++..+++ ..++||++|=-| +++-+..+++. ++-|.|.|..
T Consensus 271 t~~e~~~~~~~ll~~y~i~~IEdPl~~dD~~g~~~L~~-----~~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~iKv~q 345 (439)
T 2akz_A 271 TGDQLGALYQDFVRDYPVVSIEDPFDQDDWAAWSKFTA-----NVGIQIVGDDLTVTNPKRIERAVEEKACNCLLLKVNQ 345 (439)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHH-----TCSSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHH
T ss_pred CHHHHHHHHHHHHHhCCCcEEECCCCcccHHHHHHHHh-----CCCCEEEeCCCccCCHHHHHHHHHhCCCCEEEechhh
Confidence 55666667666544 5666665 488999999754 88888888874 9999999999
Q ss_pred CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCC
Q 004907 175 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 225 (724)
Q Consensus 175 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 225 (724)
+|.-. ...++++.|+++|+.+=+|-.+|.
T Consensus 346 iGGit----------------------ea~~ia~lA~~~g~~~~~sh~~gE 374 (439)
T 2akz_A 346 IGSVT----------------------EAIQACKLAQENGWGVMVSHRSGE 374 (439)
T ss_dssp HCCHH----------------------HHHHHHHHHHHTTCEEEEECCSBC
T ss_pred cCCHH----------------------HHHHHHHHHHHCCCeEEeecCCCc
Confidence 99844 256799999999998866654444
No 97
>3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A*
Probab=71.67 E-value=5.1 Score=41.86 Aligned_cols=96 Identities=18% Similarity=0.247 Sum_probs=66.9
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCC-CCHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIH-FAPSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIH-F~~~lAl~ 160 (724)
+|.+.+++|= .|. .-|.+.+++=+++|++ .+..+++ .+++|+++|=. +++.-+..
T Consensus 180 ~g~~~~l~vD--an~-~~~~~~a~~~~~~L~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 251 (354)
T 3jva_A 180 VGFDIKLRLD--ANQ-AWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTS-----QVNTTIMADESCFDAQDALE 251 (354)
T ss_dssp HCTTSEEEEE--CTT-CSCHHHHHHHHHHTTTSCEEEEECCSCTTCHHHHHHHHH-----HCSSEEEESTTCCSHHHHHH
T ss_pred cCCCCeEEEE--CCC-CCCHHHHHHHHHHHHhcCCCEEECCCChhhHHHHHHHHH-----hCCCCEEEcCCcCCHHHHHH
Confidence 5666777763 222 2245555555555555 4455554 57899999966 45666667
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
+++ .+|-|.|.|..+|+-. ...++...|+++|+++=+|...
T Consensus 252 ~l~~~~~d~v~~k~~~~GGit----------------------~~~~i~~~A~~~gi~~~~~~~~ 294 (354)
T 3jva_A 252 LVKKGTVDVINIKLMKCGGIH----------------------EALKINQICETAGIECMIGCMA 294 (354)
T ss_dssp HHHHTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCEEEECCCT
T ss_pred HHHcCCCCEEEECchhcCCHH----------------------HHHHHHHHHHHcCCeEEecCCC
Confidence 776 3999999999998844 3678999999999999877654
No 98
>3qn3_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, glycolysis, lyase; 2.13A {Campylobacter jejuni}
Probab=71.45 E-value=11 Score=41.03 Aligned_cols=89 Identities=13% Similarity=0.166 Sum_probs=66.6
Q ss_pred CHHHHHHHHHH-HHH----------------HHHHHHHHhhhcCCCcceeecCCCC--HHHHHHHhhh--cCccccCCCC
Q 004907 116 DVAGTVEEVMR-IAD----------------ACFEIKNSLVQKNYNIPLVADIHFA--PSVALRVAEC--FDKIRVNPGN 174 (724)
Q Consensus 116 Dv~atv~Qi~~-L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~--~~lAl~a~~~--vdkiRINPGN 174 (724)
+.+..++-..+ |++ ++..+++++ +.++||++|=.|. ++-+..+++. ++.|.|.+..
T Consensus 262 t~~eai~~~~~ll~~y~i~~IEdPl~~dD~e~~~~L~~~~---g~~ipI~gDE~~~tn~~~~~~~i~~~a~d~i~iKv~q 338 (417)
T 3qn3_A 262 SSEALIERYVELCAKYPICSIEDGLAENDFEGWIKLTEKL---GNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPNQ 338 (417)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEESSSCTTCHHHHHHHHHHH---TTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHH
T ss_pred CHHHHHHHHHHHHhhcceeEEecCCCcccHHHHHHHHHhh---CCCCceecCCcccCCHHHHHHHHHhCCCCEEEecCCC
Confidence 45666766776 454 666776632 3479999997764 7777777763 9999999999
Q ss_pred CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchH
Q 004907 175 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDR 229 (724)
Q Consensus 175 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~ 229 (724)
+|.-. ...++++.|+.+|+++=||-.+|.-++.
T Consensus 339 iGGiT----------------------ea~kia~lA~~~G~~v~vsh~sgEt~d~ 371 (417)
T 3qn3_A 339 IGTIT----------------------QTMRTVRLAQRNNYKCVMSHRSGESEDA 371 (417)
T ss_dssp HCSHH----------------------HHHHHHHHHHHTTCEEEEECCSSCCSCC
T ss_pred CCCHH----------------------HHHHHHHHHHHcCCeEEEeCCCCCchHH
Confidence 99844 2567899999999999888887776543
No 99
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold, mannonate dehydratase, D-mannonate, lyase; HET: CS2; 1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A 2qjn_A* 2qjm_A*
Probab=71.35 E-value=11 Score=40.46 Aligned_cols=94 Identities=12% Similarity=0.034 Sum_probs=67.4
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.||.|= .| .--+.+.+++=+++|++ .+..|++ .+++||++|=.+ ++.-+..
T Consensus 217 ~G~d~~l~vD--aN-~~~~~~~A~~~~~~L~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 288 (418)
T 3r4e_A 217 YGFDHHLLHD--GH-HRYTPQEAANLGKMLEPYQLFWLEDCTPAENQEAFRLVRQ-----HTVTPLAVGEIFNTIWDAKD 288 (418)
T ss_dssp HCSSSEEEEE--CT-TCSCHHHHHHHHHHHGGGCCSEEESCSCCSSGGGGHHHHH-----HCCSCEEECTTCCSGGGTHH
T ss_pred cCCCCeEEEe--CC-CCCCHHHHHHHHHHHHhhCCCEEECCCCccCHHHHHHHHh-----cCCCCEEEcCCcCCHHHHHH
Confidence 5677788772 22 22356666666666766 4556665 488999999654 4666667
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+++ ++|-|.|.|+..|.-. ...++...|+++|+++=++.
T Consensus 289 ~l~~~a~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~~h~ 329 (418)
T 3r4e_A 289 LIQNQLIDYIRATVVGAGGLT----------------------HLRRIADLASLYQVRTGCHG 329 (418)
T ss_dssp HHHTTCCSEECCCTTTTTHHH----------------------HHHHHHHHHHHTTCEEEECC
T ss_pred HHHcCCCCeEecCccccCCHH----------------------HHHHHHHHHHHcCCEEeecC
Confidence 776 3999999999998744 35779999999999985554
No 100
>2ptz_A Enolase; lyase, glycolysis,His-TAG; 1.65A {Trypanosoma brucei} SCOP: c.1.11.1 d.54.1.1 PDB: 2ptx_A 2pty_A* 2ptw_A 2pu0_A 2pu1_A* 1oep_A
Probab=71.31 E-value=9.8 Score=41.26 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhcCCCcceeecCC--CCHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 205 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIH--F~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 205 (724)
++..+++++ +.++||++|=. +++.....+++. ++-|.|.|..+|.-. ...+
T Consensus 304 g~~~l~~~~---g~~ipI~gDe~~v~~~~~~~~~i~~~a~d~i~ik~~~~GGit----------------------ea~~ 358 (432)
T 2ptz_A 304 GFAGITEAL---KGKTQIVGDDLTVTNTERIKMAIEKKACNSLLLKINQIGTIS----------------------EAIA 358 (432)
T ss_dssp HHHHHHHHT---TTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHH----------------------HHHH
T ss_pred HHHHHHHhc---CCCCeEEecCcccCCHHHHHHHHHcCCCCEEEecccccCCHH----------------------HHHH
Confidence 667777642 34899999976 788888788774 999999999999844 2567
Q ss_pred HHHHHHhcCCcEEEeeccCCC
Q 004907 206 LVEKCKKYGRAVRIGTNHGSL 226 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL 226 (724)
+++.|+++|+++=+|-.+|.-
T Consensus 359 i~~lA~~~g~~v~~~h~~get 379 (432)
T 2ptz_A 359 SSKLCMENGWSVMVSHRSGET 379 (432)
T ss_dssp HHHHHHHTTCEEEEECCSBCC
T ss_pred HHHHHHHcCCeEEecCCCCcc
Confidence 999999999999887666653
No 101
>1kcz_A Beta-methylaspartase; beta zigzag, alpha/beta-barrel, lyase; 1.90A {Clostridium tetanomorphum} SCOP: c.1.11.2 d.54.1.1 PDB: 1kd0_A* 3zvi_A 3zvh_A
Probab=71.16 E-value=7.7 Score=41.40 Aligned_cols=68 Identities=13% Similarity=0.162 Sum_probs=51.7
Q ss_pred HHHHHHHhhhcCCCcceeecCC-CCHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHH
Q 004907 131 CFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLV 207 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv 207 (724)
+..++++|.++++++||++|=. ++..-...+++ +++-|.|.|..+|.-. ...+++
T Consensus 288 ~~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit----------------------~a~~i~ 345 (413)
T 1kcz_A 288 MRDLRAELDGRGVDAELVADEWCNTVEDVKFFTDNKAGHMVQIKTPDLGGVN----------------------NIADAI 345 (413)
T ss_dssp HHHHHHHHHHHTCCEEEEECTTCCSHHHHHHHHHTTCSSEEEECTGGGSSTH----------------------HHHHHH
T ss_pred HHHHHHhhhcCCCCCcEEeCCCcCCHHHHHHHHHhCCCCEEEeCccccCCHH----------------------HHHHHH
Confidence 3455555555568999999966 45666666665 4999999999998843 257799
Q ss_pred HHHHhcCCcEEEe
Q 004907 208 EKCKKYGRAVRIG 220 (724)
Q Consensus 208 ~~ake~g~~IRIG 220 (724)
..|+++|+++=+|
T Consensus 346 ~~A~~~gi~~~~~ 358 (413)
T 1kcz_A 346 MYCKANGMGAYCG 358 (413)
T ss_dssp HHHHHTTCEEEEC
T ss_pred HHHHHcCCEEEec
Confidence 9999999998775
No 102
>2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A*
Probab=70.75 E-value=9 Score=40.63 Aligned_cols=91 Identities=12% Similarity=0.191 Sum_probs=65.8
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+-||+|=- | ..-+.+.+++-+++|++ .+..|++ .+++||++|=.+ ++.-+..
T Consensus 217 vG~d~~l~vDa--n-~~~~~~~ai~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 288 (398)
T 2pp0_A 217 LGDEFPLMVDA--N-QQWDRETAIRMGRKMEQFNLIWIEEPLDAYDIEGHAQLAA-----ALDTPIATGEMLTSFREHEQ 288 (398)
T ss_dssp HCSSSCEEEEC--T-TCSCHHHHHHHHHHHGGGTCSCEECCSCTTCHHHHHHHHH-----HCSSCEEECTTCCSHHHHHH
T ss_pred cCCCCeEEEEC--C-CCCCHHHHHHHHHHHHHcCCceeeCCCChhhHHHHHHHHh-----hCCCCEEecCCcCCHHHHHH
Confidence 57777887731 2 23356666666666665 4555655 478999999765 5677777
Q ss_pred Hhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 161 VAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 161 a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
+++. +|-|.|.|..+|.-. ...++++.|+++|+++=
T Consensus 289 ~i~~~~~d~v~ik~~~~GGit----------------------e~~~i~~~A~~~gi~~~ 326 (398)
T 2pp0_A 289 LILGNASDFVQPDAPRVGGIS----------------------PFLKIMDLAAKHGRKLA 326 (398)
T ss_dssp HHHTTCCSEECCCHHHHTSHH----------------------HHHHHHHHHHHTTCEEC
T ss_pred HHHcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCeEe
Confidence 7764 999999999998744 35779999999999863
No 103
>3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A
Probab=70.20 E-value=7.3 Score=41.95 Aligned_cols=93 Identities=8% Similarity=0.035 Sum_probs=66.1
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.||.|= .| ..-|.+.+++-+++|++ .+..|++ .+++|+++|=++ ++.-+..
T Consensus 227 vG~d~~L~vD--aN-~~~~~~~Ai~~~~~Le~~~i~~iEeP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 298 (412)
T 3stp_A 227 IGYDNDLMLE--CY-MGWNLDYAKRMLPKLAPYEPRWLEEPVIADDVAGYAELNA-----MNIVPISGGEHEFSVIGCAE 298 (412)
T ss_dssp HCSSSEEEEE--CT-TCSCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHH-----TCSSCEEECTTCCSHHHHHH
T ss_pred cCCCCeEEEE--CC-CCCCHHHHHHHHHHHHhcCCCEEECCCCcccHHHHHHHHh-----CCCCCEEeCCCCCCHHHHHH
Confidence 5667777773 22 22356666666666665 4445554 589999999774 4666777
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+++ ++|-|.|.|+..|.-. ...++...|+++|+++=+|
T Consensus 299 li~~~a~D~v~ik~~~~GGit----------------------~a~kia~~A~a~gi~v~~h 338 (412)
T 3stp_A 299 LINRKAVSVLQYDTNRVGGIT----------------------AAQKINAIAEAAQIPVIPH 338 (412)
T ss_dssp HHHTTCCSEECCCHHHHTHHH----------------------HHHHHHHHHHHHTCCBCCS
T ss_pred HHHcCCCCEEecChhhcCCHH----------------------HHHHHHHHHHHcCCEEEec
Confidence 776 3999999999998743 3578999999999987544
No 104
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Probab=69.42 E-value=44 Score=34.40 Aligned_cols=129 Identities=16% Similarity=0.259 Sum_probs=72.1
Q ss_pred eEEEeeeecCCCCCe-EEeeccCCCCCCHHHHHHHHHHHHH---------------------------------HHHHHH
Q 004907 90 TVMVGNVAIGSEHPI-RVQTMTTNDTKDVAGTVEEVMRIAD---------------------------------ACFEIK 135 (724)
Q Consensus 90 ~V~VG~V~IGG~~PI-~VQSMt~t~T~Dv~atv~Qi~~L~~---------------------------------a~~~I~ 135 (724)
.|.+|++.||+++|+ +|=.-+ .-.|.+..++-+.+|.+ .++.++
T Consensus 2 ~i~i~~~~iG~~~~~~vIAGpc--~~~~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~~~~g~~l~~gl~~l~ 79 (280)
T 2qkf_A 2 DIKINDITLGNNSPFVLFGGIN--VLESLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFE 79 (280)
T ss_dssp CEEETTEEESTTSCCEEEEEEE--ECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCSSCSSSSSCCCSCHHHHHHHHH
T ss_pred ceEeCCEEECCCCceEEEEecC--CCCCHHHHHHHHHHHHHhhhhcceeEEEeeeeecCCCCChHHhhccchHHHHHHHH
Confidence 478999999999854 554333 34566666666666665 222222
Q ss_pred HHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC
Q 004907 136 NSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 215 (724)
Q Consensus 136 ~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 215 (724)
+ .++...+|++.++|--..+ -..++.+|-+-|--+|+-+ .++++++-..|.
T Consensus 80 ~--~~~~~Gl~~~te~~d~~~~-~~l~~~~d~~kIga~~~~n--------------------------~~ll~~~a~~~k 130 (280)
T 2qkf_A 80 K--VKAEFGIPVITDVHEPHQC-QPVAEVCDVIQLPAFLARQ--------------------------TDLVVAMAKTGN 130 (280)
T ss_dssp H--HHHHHCCCEEEECCSGGGH-HHHHHHCSEEEECGGGTTB--------------------------HHHHHHHHHTCC
T ss_pred H--HHHHcCCcEEEecCCHHHH-HHHHhhCCEEEECcccccC--------------------------HHHHHHHHcCCC
Confidence 2 2234556777776543333 2333446666665555532 236677778899
Q ss_pred cEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 216 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 216 ~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
|| ++-.|-- .|++.|..+ +++++..|=.++.+=.
T Consensus 131 PV--~lk~G~~---------~t~~e~~~A----~~~i~~~Gn~~i~L~~ 164 (280)
T 2qkf_A 131 VV--NIKKPQF---------LSPSQMKNI----VEKFHEAGNGKLILCE 164 (280)
T ss_dssp EE--EEECCTT---------SCGGGHHHH----HHHHHHTTCCCEEEEE
T ss_pred cE--EEECCCC---------CCHHHHHHH----HHHHHHcCCCeEEEEE
Confidence 99 4322210 144444433 4566677776666644
No 105
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=69.21 E-value=1.1 Score=45.13 Aligned_cols=16 Identities=38% Similarity=1.070 Sum_probs=14.0
Q ss_pred ceeecCCCCccccccH
Q 004907 623 TEYVSCPSCGRTLFDL 638 (724)
Q Consensus 623 te~ISCPsCGRTlfDL 638 (724)
-++|.||.|||.||.-
T Consensus 220 ~~Iv~Cp~CgRIL~~~ 235 (256)
T 3na7_A 220 GDMITCPYCGRILYAE 235 (256)
T ss_dssp SSCEECTTTCCEEECS
T ss_pred CCEEECCCCCeeEEeC
Confidence 4899999999999964
No 106
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=69.05 E-value=9.6 Score=41.58 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCcceeecCCC--CHHHHHHHhhh--cCccccCCCC
Q 004907 116 DVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADIHF--APSVALRVAEC--FDKIRVNPGN 174 (724)
Q Consensus 116 Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~iPLVADIHF--~~~lAl~a~~~--vdkiRINPGN 174 (724)
+.+..++.+.++.+ ++..+++ ..++||++|=-| +++-+..+++. ++-|.|.|..
T Consensus 274 t~~eai~~~~~~l~~y~i~~iEdPl~~dD~~g~~~l~~-----~~~ipI~gDE~~vt~~~~~~~~i~~~a~d~i~ikv~q 348 (436)
T 2al1_A 274 TGPQLADLYHSLMKRYPIVSIEDPFAEDDWEAWSHFFK-----TAGIQIVADDLTVTNPKRIATAIEKKAADALLLKVNQ 348 (436)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHT-----TCCSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHH
T ss_pred CHHHHHHHHHHHHHhCCcEEEECCCCCcCHHHHHHHHh-----cCCCeEEECCcccCCHHHHHHHHHhCCCCEEEechhh
Confidence 45556666666543 5555544 488999999864 78888888874 9999999999
Q ss_pred CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCC
Q 004907 175 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSL 226 (724)
Q Consensus 175 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL 226 (724)
+|.-. ...++++.|+.+|+++=+|-.+|.-
T Consensus 349 iGGit----------------------ea~~ia~lA~~~g~~~~~sh~sgEt 378 (436)
T 2al1_A 349 IGTLS----------------------ESIKAAQDSFAAGWGVMVSHRSGET 378 (436)
T ss_dssp HCCHH----------------------HHHHHHHHHHHTTCEEEEECCSBCC
T ss_pred cCCHH----------------------HHHHHHHHHHHcCCeEEEecCCCch
Confidence 99844 2567999999999988666555543
No 107
>3dgb_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding, isomeras structural genomics, PSI-2; HET: MUC; 1.70A {Pseudomonas fluorescens} PDB: 3ct2_A* 3fj4_A* 1muc_A 1bkh_A 3muc_A 2muc_A 1f9c_A
Probab=68.64 E-value=8.5 Score=40.71 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=49.2
Q ss_pred HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
.+..+++ .+++||.+|=.+ +..-+..+++ ++|-|.|.|...|+-. ...++
T Consensus 236 ~~~~l~~-----~~~ipIa~dE~~~~~~~~~~~~~~~~~d~v~~k~~~~GGit----------------------~~~~i 288 (382)
T 3dgb_A 236 GMVRLNA-----SSPAPIMADESIECVEDAFNLAREGAASVFALKIAKNGGPR----------------------ATLRT 288 (382)
T ss_dssp HHHHHHH-----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHHHTSHH----------------------HHHHH
T ss_pred HHHHHHH-----hCCCCEEeCCCcCCHHHHHHHHHcCCCCEEEecccccCCHH----------------------HHHHH
Confidence 4445554 578999999664 4555556665 4999999999998744 35779
Q ss_pred HHHHHhcCCcEEEeec
Q 004907 207 VEKCKKYGRAVRIGTN 222 (724)
Q Consensus 207 v~~ake~g~~IRIGvN 222 (724)
...|+++|+++=+|..
T Consensus 289 ~~~A~~~gi~~~~~~~ 304 (382)
T 3dgb_A 289 AAIAEAAGIGLYGGTM 304 (382)
T ss_dssp HHHHHHHTCEEEECCS
T ss_pred HHHHHHcCCeEeecCC
Confidence 9999999999866543
No 108
>3otr_A Enolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel, TIM barrel; 2.75A {Toxoplasma gondii}
Probab=68.38 E-value=14 Score=41.02 Aligned_cols=88 Identities=8% Similarity=-0.021 Sum_probs=66.7
Q ss_pred CHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCcceeecCC--CCHHHHHHHhhh--cCccccCCCC
Q 004907 116 DVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAEC--FDKIRVNPGN 174 (724)
Q Consensus 116 Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~iPLVADIH--F~~~lAl~a~~~--vdkiRINPGN 174 (724)
+.+..++-..+|.+ +...+.+++ +.++|||+|=- .+++.+..+++. ++.|.|-|..
T Consensus 282 t~~Elid~y~~lle~ypIv~IEDPl~~dD~eg~a~Lt~~l---g~~iqIvGDDl~vTn~~~i~~~Ie~~a~n~IlIKvnQ 358 (452)
T 3otr_A 282 TGEKLKEVYEGWLKKYPIISVEDPFDQDDFASFSAFTKDV---GEKTQVIGDDILVTNILRIEKALKDKACNCLLLKVNQ 358 (452)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTCHHHHHHHHHHH---TTTSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHH
T ss_pred cHHHHHHHHHHHHhhhCceEEecCCChhhHHHHHHHHHhh---CCCeEEEeCccccCCHHHHHHHHhcCCCCEEEeeccc
Confidence 45666666666544 677777753 34699999965 489999888874 9999999999
Q ss_pred CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCch
Q 004907 175 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 228 (724)
Q Consensus 175 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~ 228 (724)
+|.-. ...++++.|+++|+++=||--+|--++
T Consensus 359 IGgIT----------------------Ealka~~lA~~~G~~vmvshrSGETeD 390 (452)
T 3otr_A 359 IGSVT----------------------EAIEACLLAQKSGWGVQVSHRSGETED 390 (452)
T ss_dssp HCCHH----------------------HHHHHHHHHHHTTCEEEEECCSSCCSC
T ss_pred cccHH----------------------HHHHHHHHHHHcCCeEEEeCCCCCCch
Confidence 99843 246789999999999888877665544
No 109
>3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A
Probab=68.30 E-value=3.7 Score=42.96 Aligned_cols=98 Identities=12% Similarity=0.124 Sum_probs=64.5
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE 163 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~ 163 (724)
+|.+.+++|= .|. .-|.+.+++=+++|++ .....++ +++.+++|+++|=.+ ++.-+..+++
T Consensus 181 ~g~~~~l~vD--an~-~~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~--l~~~~~iPIa~dE~~~~~~~~~~~~~ 255 (356)
T 3ro6_B 181 LAGRAVVRVD--PNQ-SYDRDGLLRLDRLVQELGIEFIEQPFPAGRTDWLRA--LPKAIRRRIAADESLLGPADAFALAA 255 (356)
T ss_dssp HTTSSEEEEE--CTT-CCCHHHHHHHHHHHHHTTCCCEECCSCTTCHHHHHT--SCHHHHHTEEESTTCCSHHHHHHHHS
T ss_pred hCCCCEEEEe--CCC-CCCHHHHHHHHHHHHhcCCCEEECCCCCCcHHHHHH--HHhcCCCCEEeCCcCCCHHHHHHHHh
Confidence 4566666663 121 1234555555555555 2223322 233578999999664 4566667776
Q ss_pred ---hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 164 ---CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 164 ---~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
++|-|.|.|+..|.-. ...++...|+++|+++=+|.+
T Consensus 256 ~~~~~d~v~~k~~~~GGit----------------------~~~~i~~~a~~~gi~~~~~~~ 295 (356)
T 3ro6_B 256 PPAACGIFNIKLMKCGGLA----------------------PARRIATIAETAGIDLMWGCM 295 (356)
T ss_dssp SSCSCSEEEECHHHHCSHH----------------------HHHHHHHHHHHHTCEEEECCC
T ss_pred cCCcCCEEEEcccccCCHH----------------------HHHHHHHHHHHcCCEEEecCC
Confidence 7999999999998743 357799999999999977654
No 110
>3eez_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, unknown function, PSI-2, protein structure initiative; 2.80A {Silicibacter pomeroyi}
Probab=68.14 E-value=6 Score=41.84 Aligned_cols=101 Identities=11% Similarity=0.037 Sum_probs=67.1
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------HHHHHHHHhhhcCCCcceeecCC-CCHHHHHHHhh--h
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------ACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--C 164 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------a~~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~--~ 164 (724)
+|.+.|+.|= .|. .-|.+.+++-+++|++ ....+++ +++.+++||++|=. +++.-+..+++ +
T Consensus 186 ~g~~~~l~vD--an~-~~~~~~a~~~~~~l~~~~i~iEqP~~~~~~~~~--l~~~~~iPIa~dE~~~~~~~~~~~l~~~~ 260 (378)
T 3eez_A 186 REPGEIVLYD--VNR-GWTRQQALRVMRATEDLHVMFEQPGETLDDIAA--IRPLHSAPVSVDECLVTLQDAARVARDGL 260 (378)
T ss_dssp CCTTCEEEEE--CTT-CCCHHHHHHHHHHTGGGTCCEECCSSSHHHHHH--TGGGCCCCEEECTTCCSHHHHHHHHHTTC
T ss_pred cCCCceEEEE--CCC-CCCHHHHHHHHHHhccCCeEEecCCCCHHHHHH--HHhhCCCCEEECCCCCCHHHHHHHHHcCC
Confidence 4556666663 121 2234444444444443 2233333 45578999999966 45666667775 3
Q ss_pred cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCC
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 225 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 225 (724)
+|-|.|.|+..|.-. .+.++...|+++|+++=+|-+.+|
T Consensus 261 ~d~v~ik~~~~GGit----------------------~~~~ia~~A~~~g~~~~~~~~~es 299 (378)
T 3eez_A 261 AEVFGIKLNRVGGLT----------------------RAARMRDIALTHGIDMFVMATGGS 299 (378)
T ss_dssp CSEEEEEHHHHTSHH----------------------HHHHHHHHHHHTTCEEEEECSSCS
T ss_pred CCEEEeCchhcCCHH----------------------HHHHHHHHHHHcCCEEEcCCCCCC
Confidence 999999999998744 367899999999999988876654
No 111
>3go2_A Putative L-alanine-DL-glutamate epimerase; structural genomics, isomerase, PSI-2; 1.70A {Burkholderia xenovorans} PDB: 2oo6_A 3sn0_A 3sn1_A* 3sn4_A*
Probab=68.05 E-value=9.3 Score=40.84 Aligned_cols=92 Identities=11% Similarity=-0.006 Sum_probs=64.9
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceeecCCCC-HHHHHHHh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVA 162 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~ 162 (724)
+|.+.||.|= .|. .-+.+.+++-+++|++ .+..|++ .+++||++|=.+. +.-+..++
T Consensus 210 vG~d~~l~vD--aN~-~~~~~~A~~~~~~L~~~~i~~iE~P~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~~i 281 (409)
T 3go2_A 210 AGPDVEILLD--LNF-NAKPEGYLKILRELADFDLFWVEIDSYSPQGLAYVRN-----HSPHPISSCETLFGIREFKPFF 281 (409)
T ss_dssp HCTTSEEEEE--CTT-CSCHHHHHHHHHHTTTSCCSEEECCCSCHHHHHHHHH-----TCSSCEEECTTCCHHHHHHHHH
T ss_pred hCCCCEEEEE--CCC-CCCHHHHHHHHHHHhhcCCeEEEeCcCCHHHHHHHHh-----hCCCCEEeCCCcCCHHHHHHHH
Confidence 4667777773 232 2356666666666665 4555554 6889999997655 55666777
Q ss_pred h--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 163 E--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 163 ~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+ ++|-|.|.|.. |.-. ...++...|+++|+++=++
T Consensus 282 ~~~~~d~v~~k~~~-GGit----------------------~~~~ia~~A~~~gi~~~~h 318 (409)
T 3go2_A 282 DANAVDVAIVDTIW-NGVW----------------------QSMKIAAFADAHDINVAPH 318 (409)
T ss_dssp HTTCCSEEEECHHH-HCHH----------------------HHHHHHHHHHHTTCEEEEC
T ss_pred HhCCCCEEEeCCCC-CCHH----------------------HHHHHHHHHHHcCCEEeec
Confidence 6 39999999987 7633 3577999999999999665
No 112
>3my9_A Muconate cycloisomerase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics, nysgx; 2.20A {Azorhizobium caulinodans}
Probab=67.95 E-value=5.2 Score=42.14 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhcCCCcceeecCC-CCHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
.+..+++ .+++|+.+|=. +++.-+..+++ ++|-|.|.|...|+-. ...++
T Consensus 233 ~~~~l~~-----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit----------------------~~~~i 285 (377)
T 3my9_A 233 AMAGFAA-----ALDTPILADESCFDAVDLMEVVRRQAADAISVKIMKCGGLM----------------------KAQSL 285 (377)
T ss_dssp HHHHHHH-----HCSSCEEESTTCSSHHHHHHHHHHTCCSEEECCHHHHTSHH----------------------HHHHH
T ss_pred HHHHHHH-----hCCCCEEECCccCCHHHHHHHHHcCCCCEEEecccccCCHH----------------------HHHHH
Confidence 4445554 57899999966 45556666665 4999999999998744 35779
Q ss_pred HHHHHhcCCcEEEee
Q 004907 207 VEKCKKYGRAVRIGT 221 (724)
Q Consensus 207 v~~ake~g~~IRIGv 221 (724)
+..|+++|+++=+|-
T Consensus 286 ~~~a~~~gi~~~~~~ 300 (377)
T 3my9_A 286 MAIADTAGLPGYGGT 300 (377)
T ss_dssp HHHHHHHTCCEECCE
T ss_pred HHHHHHcCCeEecCC
Confidence 999999999985543
No 113
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=67.27 E-value=33 Score=34.76 Aligned_cols=120 Identities=13% Similarity=0.097 Sum_probs=69.0
Q ss_pred CCcceeecCCCCHHHHHHHhhh-cCccccC-CCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE--
Q 004907 143 YNIPLVADIHFAPSVALRVAEC-FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR-- 218 (724)
Q Consensus 143 ~~iPLVADIHF~~~lAl~a~~~-vdkiRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR-- 218 (724)
.++|+.+=. -+.+-...|+++ ++.|+|- +++= .|.... +....+..-++++++|+.||++|+.++
T Consensus 71 ~~~~v~~l~-~n~~~i~~a~~~G~~~V~i~~~~S~-----~h~~~~-----~~~~~~e~~~~~~~~v~~a~~~G~~V~~~ 139 (295)
T 1ydn_A 71 DGVRYSVLV-PNMKGYEAAAAAHADEIAVFISASE-----GFSKAN-----INCTIAESIERLSPVIGAAINDGLAIRGY 139 (295)
T ss_dssp SSSEEEEEC-SSHHHHHHHHHTTCSEEEEEEESCH-----HHHHHH-----TSSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEEe-CCHHHHHHHHHCCCCEEEEEEecCH-----HHHHHH-----cCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 467776655 567777788887 9999973 2220 011000 001122233456779999999999999
Q ss_pred EeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE--EecCChhHHHHHHHHHHHH
Q 004907 219 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS--MKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 219 IGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS--~KaSnv~~~v~Ayrlla~~ 282 (724)
|+.-.| -+.. +.+. .+.++++++.+.+.|-+.|.|. .=..+|..+.+-.+.+.++
T Consensus 140 l~~~~~-~e~~-----~~~~---~~~~~~~~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~ 196 (295)
T 1ydn_A 140 VSCVVE-CPYD-----GPVT---PQAVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAI 196 (295)
T ss_dssp EECSSE-ETTT-----EECC---HHHHHHHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTT
T ss_pred EEEEec-CCcC-----CCCC---HHHHHHHHHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHh
Confidence 554322 2221 1121 3567788888889999876665 1123455555555555544
No 114
>3ijl_A Muconate cycloisomerase; enolase superfamily, dipeptide epimerase, L-Pro-D-Glu, nonpr binding; HET: DGL; 1.50A {Bacteroides thetaiotaomicron} PDB: 3iji_A* 3ijq_A*
Probab=67.23 E-value=6.4 Score=40.97 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=61.1
Q ss_pred cCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCCH-HHHHHHhhhcCccccCC
Q 004907 110 TTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFAP-SVALRVAECFDKIRVNP 172 (724)
Q Consensus 110 t~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~~-~lAl~a~~~vdkiRINP 172 (724)
.|..-.|.+.+++-+++|++ ++..+++ .+++||.+|=++.- .-+..++.++|-|.|.|
T Consensus 180 aN~~~t~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~-----~~~ipIa~dE~~~~~~~~~~~~~a~d~i~~k~ 254 (338)
T 3ijl_A 180 ANQGWKDRQYALDMIHWLKEKGIVMIEQPMPKEQLDDIAWVTQ-----QSPLPVFADESLQRLGDVAALKGAFTGINIKL 254 (338)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTTEEEEECCSCTTCHHHHHHHHH-----TCSSCEEESTTCCSGGGTGGGBTTBSEEEECH
T ss_pred CcCCCCCHHHHHHHHHHHhhCCCCEEECCCCCCcHHHHHHHHh-----cCCCCEEECCCCCCHHHHHHHHhhCCEEEecc
Confidence 44444477777888888887 4455544 68999999955432 22222345699999999
Q ss_pred CCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 173 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 173 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
...|.-. ...++...|+++|+++=+|..
T Consensus 255 ~~~GGit----------------------~~~~ia~~A~~~gi~~~~~~~ 282 (338)
T 3ijl_A 255 MKCTGMR----------------------EAWKMVTLAHALGMRVMVGCM 282 (338)
T ss_dssp HHHTSHH----------------------HHHHHHHHHHHTTCEEEECCC
T ss_pred cccCCHH----------------------HHHHHHHHHHHcCCEEEecCC
Confidence 9998744 357799999999999977654
No 115
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=67.12 E-value=7 Score=42.33 Aligned_cols=65 Identities=9% Similarity=0.074 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
.+..|++ .+++||++|=.+ ++.-+..+++ .+|-|++.|+..|.-. ...++
T Consensus 245 ~~~~l~~-----~~~iPIa~dE~~~~~~~~~~~l~~g~~D~v~~d~~~~GGit----------------------~~~ki 297 (433)
T 3rcy_A 245 AMAQVAR-----AVRIPVATGERLTTKAEFAPVLREGAAAILQPALGRAGGIW----------------------EMKKV 297 (433)
T ss_dssp HHHHHHH-----HSSSCEEECTTCCSHHHHHHHHHTTCCSEECCCHHHHTHHH----------------------HHHHH
T ss_pred HHHHHHh-----ccCCCEEecCCCCCHHHHHHHHHcCCCCEEEeCchhcCCHH----------------------HHHHH
Confidence 4455555 588999999665 4666767776 3999999999998744 36789
Q ss_pred HHHHHhcCCcEEEee
Q 004907 207 VEKCKKYGRAVRIGT 221 (724)
Q Consensus 207 v~~ake~g~~IRIGv 221 (724)
...|+.+|+++=++.
T Consensus 298 a~lA~~~gv~~~~h~ 312 (433)
T 3rcy_A 298 AAMAEVYNAQMAPHL 312 (433)
T ss_dssp HHHHHTTTCEECCCC
T ss_pred HHHHHHcCCEEEecC
Confidence 999999999885553
No 116
>1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A
Probab=66.69 E-value=11 Score=39.36 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
.+..+++ .+++|+++|=.+ ++.-+..+++. +|-|.|.|..+|.-. ...++
T Consensus 230 ~~~~l~~-----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit----------------------~~~~i 282 (375)
T 1r0m_A 230 DHAELAR-----RIRTPLCLDESVASASDARKALALGAGGVINLKVARVGGHA----------------------ESRRV 282 (375)
T ss_dssp HHHHHHH-----HCSSCEEESTTCCSHHHHHHHHHHTSCSEEEECTTTTTSHH----------------------HHHHH
T ss_pred HHHHHHH-----hCCCCEEecCccCCHHHHHHHHHhCCCCEEEECcchhcCHH----------------------HHHHH
Confidence 5556665 478999999775 56666677753 999999999998844 25779
Q ss_pred HHHHHhcCCcEEEeecc
Q 004907 207 VEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 207 v~~ake~g~~IRIGvN~ 223 (724)
++.|+++|+++=+|-+.
T Consensus 283 ~~~A~~~g~~~~~~~~~ 299 (375)
T 1r0m_A 283 HDVAQSFGAPVWCGGML 299 (375)
T ss_dssp HHHHHHTTCCEEECCCC
T ss_pred HHHHHHcCCcEEecCcc
Confidence 99999999997555433
No 117
>1kko_A 3-methylaspartate ammonia-lyase; enolase superfamily, TIM barrel; 1.33A {Citrobacter amalonaticus} SCOP: c.1.11.2 d.54.1.1 PDB: 1kkr_A*
Probab=66.42 E-value=9.9 Score=40.77 Aligned_cols=70 Identities=14% Similarity=0.163 Sum_probs=51.9
Q ss_pred HHHHHHHHhhhcCCCcceeecCC-CCHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
++..++++|.++++++||++|=+ +++.-....++ +++-|.|.|..+|.-. ...++
T Consensus 287 ~~~~l~~~l~~~g~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit----------------------ea~~i 344 (413)
T 1kko_A 287 MLTAITKELTRLGSGVKIVADEWCNTYQDIVDFTDAGSCHMVQIKTPDLGGIH----------------------NIVDA 344 (413)
T ss_dssp HHHHHHHHHHHHTCCCEEEECTTCCSHHHHHHHHHTTCCSEEEECGGGGSSTH----------------------HHHHH
T ss_pred HHHHHHHhcccCCCCCcEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCCHH----------------------HHHHH
Confidence 34455555544558999999975 45555556665 4999999999998843 25779
Q ss_pred HHHHHhcCCcEEEee
Q 004907 207 VEKCKKYGRAVRIGT 221 (724)
Q Consensus 207 v~~ake~g~~IRIGv 221 (724)
++.|+++|+++=+|.
T Consensus 345 ~~~A~~~gi~~~~~~ 359 (413)
T 1kko_A 345 VLYCNKHGMEAYQGG 359 (413)
T ss_dssp HHHHHHHTCEEEECC
T ss_pred HHHHHHcCCeEEecC
Confidence 999999999987764
No 118
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=66.17 E-value=33 Score=35.82 Aligned_cols=109 Identities=11% Similarity=-0.011 Sum_probs=66.1
Q ss_pred CCcceeecCCC---CHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 143 YNIPLVADIHF---APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 143 ~~iPLVADIHF---~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
.++|+++=... +.+-...|+++ ++.+||. . . - ++ . +.+.++++.||++|+.++
T Consensus 81 ~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I~---~-~-~--------s~------~----~~~~~~i~~ak~~G~~v~ 137 (345)
T 1nvm_A 81 SHAQIATLLLPGIGSVHDLKNAYQAGARVVRVA---T-H-C--------TE------A----DVSKQHIEYARNLGMDTV 137 (345)
T ss_dssp SSSEEEEEECBTTBCHHHHHHHHHHTCCEEEEE---E-E-T--------TC------G----GGGHHHHHHHHHHTCEEE
T ss_pred CCCEEEEEecCCcccHHHHHHHHhCCcCEEEEE---E-e-c--------cH------H----HHHHHHHHHHHHCCCEEE
Confidence 35676654211 35556677777 9999983 1 1 0 00 0 246779999999999998
Q ss_pred EeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHHhhcCCC--Cccc
Q 004907 219 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAEMYVHGW--DYPL 292 (724)
Q Consensus 219 IGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~v~Ayrlla~~m~~~g~--dYPL 292 (724)
..+-..+ ..++ +-.++.++.+++.|-+ .||++.+ .|..+-+-.+.+.+. + +-|+
T Consensus 138 ~~~~~a~---------~~~~----e~~~~ia~~~~~~Ga~--~i~l~DT~G~~~P~~v~~lv~~l~~~-----~~~~~pi 197 (345)
T 1nvm_A 138 GFLMMSH---------MIPA----EKLAEQGKLMESYGAT--CIYMADSGGAMSMNDIRDRMRAFKAV-----LKPETQV 197 (345)
T ss_dssp EEEESTT---------SSCH----HHHHHHHHHHHHHTCS--EEEEECTTCCCCHHHHHHHHHHHHHH-----SCTTSEE
T ss_pred EEEEeCC---------CCCH----HHHHHHHHHHHHCCCC--EEEECCCcCccCHHHHHHHHHHHHHh-----cCCCceE
Confidence 8863221 1233 4455666777777876 6888854 444444444455554 4 5677
Q ss_pred cc
Q 004907 293 HL 294 (724)
Q Consensus 293 HL 294 (724)
|+
T Consensus 198 ~~ 199 (345)
T 1nvm_A 198 GM 199 (345)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 119
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=66.16 E-value=11 Score=39.69 Aligned_cols=91 Identities=9% Similarity=0.092 Sum_probs=63.0
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCC-CCHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIH-FAPSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIH-F~~~lAl~ 160 (724)
+|.+.+++|= .|. .-|.+.+++-+.+|++ .+..+++ .+++|+.+|=. +++.-+..
T Consensus 194 ~g~~~~l~vD--an~-~~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 265 (372)
T 3tj4_A 194 VDSAVRIAID--GNG-KWDLPTCQRFCAAAKDLDIYWFEEPLWYDDVTSHARLAR-----NTSIPIALGEQLYTVDAFRS 265 (372)
T ss_dssp SCTTCEEEEE--CTT-CCCHHHHHHHHHHTTTSCEEEEESCSCTTCHHHHHHHHH-----HCSSCEEECTTCCSHHHHHH
T ss_pred cCCCCcEEee--CCC-CCCHHHHHHHHHHHhhcCCCEEECCCCchhHHHHHHHHh-----hcCCCEEeCCCccCHHHHHH
Confidence 5667777763 222 2245555555555655 4445554 58899999965 45666667
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
+++ .+|-|.|.|...|.-. ...++...|+++|+++=
T Consensus 266 ~i~~~~~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~ 303 (372)
T 3tj4_A 266 FIDAGAVAYVQPDVTRLGGIT----------------------EYIQVADLALAHRLPVV 303 (372)
T ss_dssp HHHTTCCSEECCCTTTTTHHH----------------------HHHHHHHHHHHTTCCBC
T ss_pred HHHcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCEEE
Confidence 766 3999999999998743 35779999999999873
No 120
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold, acid sugar dehydratase, D-araninonate, isomera; HET: EPE D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A 3dfh_A 4gis_A 4gir_A 4ggh_A 3gy1_A
Probab=65.98 E-value=9.6 Score=40.58 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=45.3
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++|+.+|=.+ ++.-+..+++. +|-|.|.|...|.-. ...++...|+.+|++
T Consensus 248 ~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit----------------------~~~kia~~A~~~gi~ 305 (401)
T 3sbf_A 248 RSQSSVSLGLGELFNNPEEWKSLIANRRIDFIRCHVSQIGGIT----------------------PALKLGHLCQNFGVR 305 (401)
T ss_dssp HTTCCCCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHH----------------------HHHHHHHHHHHHTCE
T ss_pred HhhCCCCEEeCCccCCHHHHHHHHhcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCE
Confidence 34689999999654 46777777763 999999999998844 357799999999998
Q ss_pred EE
Q 004907 217 VR 218 (724)
Q Consensus 217 IR 218 (724)
+=
T Consensus 306 ~~ 307 (401)
T 3sbf_A 306 IA 307 (401)
T ss_dssp EC
T ss_pred EE
Confidence 73
No 121
>1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A
Probab=65.82 E-value=13 Score=38.67 Aligned_cols=94 Identities=16% Similarity=0.248 Sum_probs=64.8
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH------------------HHHHHHHHhhhcCCCcceeecCCC-CHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD------------------ACFEIKNSLVQKNYNIPLVADIHF-APSVA 158 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~------------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lA 158 (724)
+|.+.+++|= .| ..-|.+.+++-+++|++ .+..+++ .+++|+++|=.+ ++.-+
T Consensus 182 ~g~~~~l~vD--an-~~~~~~~a~~~~~~l~~~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~ipIa~dE~~~~~~~~ 253 (366)
T 1tkk_A 182 VGSAVKLRLD--AN-QGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTD-----ATDTPIMADESVFTPRQA 253 (366)
T ss_dssp HCSSSEEEEE--CT-TCSCHHHHHHHHHHHHHTTCCEEEEECCSCTTCHHHHHHHHH-----HCSSCEEECTTCCSHHHH
T ss_pred hCCCCeEEEE--CC-CCCCHHHHHHHHHHHhhcCCCceEEECCCCcccHHHHHHHHh-----hCCCCEEEcCCCCCHHHH
Confidence 4556666554 12 22355555555555544 3444544 478999999765 56667
Q ss_pred HHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 159 LRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 159 l~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
..+++ ++|-|.|.|..+|.-. ...+++..|+++|+++=+|.
T Consensus 254 ~~~i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~~~~~~ 296 (366)
T 1tkk_A 254 FEVLQTRSADLINIKLMKAGGIS----------------------GAEKINAMAEACGVECMVGS 296 (366)
T ss_dssp HHHHHHTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHhCCCCEEEeehhhhcCHH----------------------HHHHHHHHHHHcCCcEEecC
Confidence 77775 3999999999998744 35789999999999997764
No 122
>2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941}
Probab=65.56 E-value=6.6 Score=41.69 Aligned_cols=93 Identities=9% Similarity=0.055 Sum_probs=64.1
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+-+|.|=- | ..-+.+.+++-+++|++ .+..++ +.+++||++|=.+ ++.-+..
T Consensus 207 ~G~d~~l~vDa--n-~~~~~~~a~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~-----~~~~iPIa~dE~~~~~~~~~~ 278 (410)
T 2qq6_A 207 VGPEVEVAIDM--H-GRFDIPSSIRFARAMEPFGLLWLEEPTPPENLDALAEVR-----RSTSTPICAGENVYTRFDFRE 278 (410)
T ss_dssp HCSSSEEEEEC--T-TCCCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHH-----TTCSSCEEECTTCCSHHHHHH
T ss_pred cCCCCEEEEEC--C-CCCCHHHHHHHHHHHhhcCCCeEECCCChhhHHHHHHHH-----hhCCCCEEeCCCcCCHHHHHH
Confidence 45566666621 2 22356666666666655 344444 4678999999765 5677777
Q ss_pred Hhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 161 VAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 161 a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
+++. +|-|.|.|..+|.-. ...+++..|+++|+++=+|
T Consensus 279 ~i~~~~~d~v~ik~~~~GGit----------------------e~~~ia~~A~~~g~~~~~h 318 (410)
T 2qq6_A 279 LFAKRAVDYVMPDVAKCGGLA----------------------EAKRIANLAELDYIPFAPH 318 (410)
T ss_dssp HHHTTCCSEECCBHHHHTHHH----------------------HHHHHHHHHHTTTCCBCCB
T ss_pred HHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCeEeec
Confidence 7763 999999999998743 2577999999999987554
No 123
>2chr_A Chloromuconate cycloisomerase; 3.00A {Cupriavidus necator} SCOP: c.1.11.2 d.54.1.1
Probab=65.45 E-value=6.5 Score=40.93 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=61.7
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCC-HHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFA-PSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~ 160 (724)
+|.+..++|= .|.. -|.+.+++-+++|++ ++..+++ .+++|+.+|=++. ..-+..
T Consensus 185 ~g~~~~l~vD--aN~~-~~~~~A~~~~~~l~~~~~~~iEeP~~~~d~~~~~~l~~-----~~~ipIa~dE~~~~~~~~~~ 256 (370)
T 2chr_A 185 LGSKAYLRVD--VNQA-WDEQVASVYIPELEALGVELIEQPVGRENTQALRRLSD-----NNRVAIMADESLSTLASAFD 256 (370)
T ss_dssp TTTTSEEEEE--CTTC-CCTHHHHHHHHHHHTTTCCEEECCSCSSCHHHHHHHHH-----HCSSEEEESSSCCSHHHHHH
T ss_pred cCCCcEEEec--CCCC-CCHHHHHHHHHHHHhcCCceecCCCChhhhhhhhHHhh-----hccCCccCCccCCCHHHHHH
Confidence 3555555553 2221 244555555566655 4555555 5899999998765 344445
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
.++ ++|-+++.|...|.-. ...++...|+++|+++=+|-
T Consensus 257 ~~~~~a~d~i~~d~~~~GGit----------------------~~~~ia~~A~~~gi~~~~~~ 297 (370)
T 2chr_A 257 LARDRSVDVFSLKLCNMGGVS----------------------ATQKIAAVAEASGIASYGGT 297 (370)
T ss_dssp HHTTTCCSEECCCHHHHTSHH----------------------HHHHHHHHHHHHTCEECCCC
T ss_pred HHHcCCCcEEEeCCcccCCHH----------------------HHHHHHHHHHHcCCeEEeCC
Confidence 555 3999999999998743 36789999999999874443
No 124
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=65.32 E-value=57 Score=32.35 Aligned_cols=112 Identities=10% Similarity=0.088 Sum_probs=70.5
Q ss_pred eEEeeccCCCCCCHHHHHHHHHHHHH---------HHHHHHHHhhhcCCCcceeecC---------CCCH--HHHHHHhh
Q 004907 104 IRVQTMTTNDTKDVAGTVEEVMRIAD---------ACFEIKNSLVQKNYNIPLVADI---------HFAP--SVALRVAE 163 (724)
Q Consensus 104 I~VQSMt~t~T~Dv~atv~Qi~~L~~---------a~~~I~~~L~~~~~~iPLVADI---------HF~~--~lAl~a~~ 163 (724)
|++|.--..+-++.+-.++.....++ ..+.|++ +++..++|+++.+ .-++ .-+.++++
T Consensus 22 vscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~~~~~i~~--ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~ 99 (232)
T 3igs_A 22 VSCQPVPGSPLDKPEIVAAMALAAEQAGAVAVRIEGIDNLRM--TRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQ 99 (232)
T ss_dssp EECCCCTTCTTCSHHHHHHHHHHHHHTTCSEEEEESHHHHHH--HHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHH
T ss_pred EEEeCCCCCCCCCcchHHHHHHHHHHCCCeEEEECCHHHHHH--HHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHH
Confidence 56677777777777766666666666 4556665 5667899998632 2222 34556677
Q ss_pred h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHH
Q 004907 164 C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMV 242 (724)
Q Consensus 164 ~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amV 242 (724)
. +|.|=++=....+.. .+.++++.++++|+.+=..+ -+
T Consensus 100 ~Gad~V~l~~~~~~~p~----------------------~l~~~i~~~~~~g~~v~~~v--~t----------------- 138 (232)
T 3igs_A 100 AGAAIIAVDGTARQRPV----------------------AVEALLARIHHHHLLTMADC--SS----------------- 138 (232)
T ss_dssp HTCSEEEEECCSSCCSS----------------------CHHHHHHHHHHTTCEEEEEC--CS-----------------
T ss_pred cCCCEEEECccccCCHH----------------------HHHHHHHHHHHCCCEEEEeC--CC-----------------
Confidence 6 887754433322211 35779999999988773333 21
Q ss_pred HHHHHHHHHHHHCCCCcEE
Q 004907 243 ESAFEFARICRKLDFHNFL 261 (724)
Q Consensus 243 eSAle~~~i~e~~~F~div 261 (724)
.++++.+++.|++-|.
T Consensus 139 ---~eea~~a~~~Gad~Ig 154 (232)
T 3igs_A 139 ---VDDGLACQRLGADIIG 154 (232)
T ss_dssp ---HHHHHHHHHTTCSEEE
T ss_pred ---HHHHHHHHhCCCCEEE
Confidence 3556777888887664
No 125
>3tcs_A Racemase, putative; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, TIM barrel; HET: PG4; 1.88A {Roseobacter denitrificans} PDB: 3u4f_A 3t9p_A 3t8q_A
Probab=65.20 E-value=9.1 Score=40.82 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=50.3
Q ss_pred HHHHHHHHhhhcCCCcceeecCC-CCHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
.+..+++ .+++||.+|=. ++..-+..+++ ++|-|.+.|+..|.-. ...++
T Consensus 241 ~~~~l~~-----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit----------------------~a~ki 293 (388)
T 3tcs_A 241 QTKQVTD-----ALDIDVTGGEQDCDLPTWQRMIDMRAVDIVQPDILYLGGIC----------------------RTLRV 293 (388)
T ss_dssp HHHHHHH-----HCSSCEEECTTCCCHHHHHHHHHHTCCSEECCCHHHHTSHH----------------------HHHHH
T ss_pred HHHHHHH-----hcCCCEEcCCccCCHHHHHHHHHcCCCCEEEeCccccCCHH----------------------HHHHH
Confidence 4445554 58899999965 45666666665 4999999999998744 35789
Q ss_pred HHHHHhcCCcEEEeeccCC
Q 004907 207 VEKCKKYGRAVRIGTNHGS 225 (724)
Q Consensus 207 v~~ake~g~~IRIGvN~GS 225 (724)
...|+.+|+++=++...+|
T Consensus 294 a~~A~~~gv~~~~h~~~~~ 312 (388)
T 3tcs_A 294 VEMARAAGLPVTPHCANWS 312 (388)
T ss_dssp HHHHHHTTCCBCCCCCSTT
T ss_pred HHHHHHcCCEEEecCCCcH
Confidence 9999999999865544333
No 126
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=65.10 E-value=25 Score=35.88 Aligned_cols=125 Identities=11% Similarity=0.058 Sum_probs=74.4
Q ss_pred CCCcceeecCCCCHHH-----HHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC
Q 004907 142 NYNIPLVADIHFAPSV-----ALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 215 (724)
Q Consensus 142 ~~~iPLVADIHF~~~l-----Al~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 215 (724)
+.++|||||+-|-|.- +-..++. ++.|-|-=|-... .| ..++-+| .-++++.+++++++.|+
T Consensus 78 ~~~~pviaD~~~Gyg~~~~~~~~~l~~aGa~gv~iEd~~~~~-~k----~l~~~~e-------~~~~I~a~~~a~~~~g~ 145 (255)
T 2qiw_A 78 AVSIPVSVDVESGYGLSPADLIAQILEAGAVGINVEDVVHSE-GK----RVREAQE-------HADYIAAARQAADVAGV 145 (255)
T ss_dssp HCSSCEEEECTTCTTCCHHHHHHHHHHTTCCEEEECSEEGGG-TT----EECCHHH-------HHHHHHHHHHHHHHHTC
T ss_pred cCCCCEEeccCCCcCcHHHHHHHHHHHcCCcEEEECCCCCCC-CC----cccCHHH-------HHHHHHHHHHHHHhcCC
Confidence 4679999999999842 2222333 5555555442111 11 1222222 23456667777777799
Q ss_pred cEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccc
Q 004907 216 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLH 293 (724)
Q Consensus 216 ~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLH 293 (724)
|++|=.-.+++ +.-.++..++ .+.+++-++.+++.|=+=|++-+-.| .+-.+.++++ ++.|+-
T Consensus 146 ~~~v~aRtd~~----~~g~~~~~~~-~~~ai~ra~a~~eAGAd~i~~e~~~~-----~~~~~~i~~~-----~~~P~n 208 (255)
T 2qiw_A 146 DVVINGRTDAV----KLGADVFEDP-MVEAIKRIKLMEQAGARSVYPVGLST-----AEQVERLVDA-----VSVPVN 208 (255)
T ss_dssp CCEEEEEECHH----HHCTTTSSSH-HHHHHHHHHHHHHHTCSEEEECCCCS-----HHHHHHHHTT-----CSSCBE
T ss_pred CeEEEEEechh----hccCCcchHH-HHHHHHHHHHHHHcCCcEEEEcCCCC-----HHHHHHHHHh-----CCCCEE
Confidence 96654433332 1111222333 58899999999999999999866322 2345667777 788985
No 127
>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A
Probab=64.89 E-value=16 Score=34.95 Aligned_cols=75 Identities=12% Similarity=0.075 Sum_probs=44.6
Q ss_pred cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCCCchHHHhhcCCCchHHHH
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVE 243 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amVe 243 (724)
+..|++.||.-.. .+ .+.+.++++.+.++++.+.|+++|+ +|++ |++.-.. +..+
T Consensus 98 ~~~v~~~~g~~~~--------~~---~~~~~~~~~~~~l~~l~~~a~~~gv--~l~lEn~~~~~~-----~~~~------ 153 (278)
T 1i60_A 98 VKYVVAVPLVTEQ--------KI---VKEEIKKSSVDVLTELSDIAEPYGV--KIALEFVGHPQC-----TVNT------ 153 (278)
T ss_dssp CCEEEEECCBCSS--------CC---CHHHHHHHHHHHHHHHHHHHGGGTC--EEEEECCCCTTB-----SSCS------
T ss_pred CCEEEEecCCCCC--------CC---CHHHHHHHHHHHHHHHHHHHHhcCC--EEEEEecCCccc-----hhcC------
Confidence 7778887775421 01 1344556777778888888888886 4565 3332100 2223
Q ss_pred HHHHHHHHHHHCCCCcEEEEE
Q 004907 244 SAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 244 SAle~~~i~e~~~F~diviS~ 264 (724)
.-+..++++..|-.++.+-+
T Consensus 154 -~~~~~~l~~~~~~~~~g~~~ 173 (278)
T 1i60_A 154 -FEQAYEIVNTVNRDNVGLVL 173 (278)
T ss_dssp -HHHHHHHHHHHCCTTEEEEE
T ss_pred -HHHHHHHHHHhCCCCeeEEE
Confidence 33456677777777777776
No 128
>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}
Probab=64.38 E-value=10 Score=36.89 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=64.9
Q ss_pred HHHHHHHhhhcCCCcceeecCCCC--------------HHHHHHHhh-h-cCccccCCCCC---cchhhhhhccccchHH
Q 004907 131 CFEIKNSLVQKNYNIPLVADIHFA--------------PSVALRVAE-C-FDKIRVNPGNF---ADRRAQFEQLEYTDDE 191 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVADIHF~--------------~~lAl~a~~-~-vdkiRINPGNi---g~~~k~f~~~~Ytdee 191 (724)
++.+++.|.+.+..+..+ ||. .+.+++.++ . +..|++.|+.. |.....|... +..
T Consensus 57 ~~~~~~~l~~~gl~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~---~~~ 130 (301)
T 3cny_A 57 PEKLNYELKLRNLEIAGQ---WFSSYIIRDGIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKD---KPY 130 (301)
T ss_dssp HHHHHHHHHHTTCEECEE---EEEECHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTC---CCC
T ss_pred HHHHHHHHHHCCCeEEEE---eccCCCChhhHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccc---ccc
Confidence 345666666667666654 553 122333333 3 78889887422 2111111100 011
Q ss_pred -HHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 192 -YQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 192 -y~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
..+.++++.+.++++.+.|+++|+ +|++ ||.. .+..+ .-+..+++++.|-.++.+-+
T Consensus 131 ~~~~~~~~~~~~l~~l~~~a~~~gv--~l~lE~~~~-------~~~~~-------~~~~~~l~~~~~~~~vg~~~ 189 (301)
T 3cny_A 131 FTDKEWDEVCKGLNHYGEIAAKYGL--KVAYHHHMG-------TGIQT-------KEETDRLMANTDPKLVGLLY 189 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTC--EEEEECCTT-------SSSCS-------HHHHHHHHHTSCTTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCC--EEEEecCCC-------cccCC-------HHHHHHHHHhCCccceeEEe
Confidence 345667888889999999999996 5566 4321 12233 34567788888888888877
No 129
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A
Probab=64.25 E-value=57 Score=33.90 Aligned_cols=131 Identities=15% Similarity=0.227 Sum_probs=78.2
Q ss_pred eeEEEeeeecCCCCCe-EEeeccCCCCCCHHHHHHHHHHHHH---------------------------------HHHHH
Q 004907 89 RTVMVGNVAIGSEHPI-RVQTMTTNDTKDVAGTVEEVMRIAD---------------------------------ACFEI 134 (724)
Q Consensus 89 r~V~VG~V~IGG~~PI-~VQSMt~t~T~Dv~atv~Qi~~L~~---------------------------------a~~~I 134 (724)
..|.||++.||+++|+ +|=.. ..-.|.+..++-+.+|.+ .++.+
T Consensus 4 ~~i~i~~~~iG~~~~~~vIAGp--c~~~~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~sf~g~~l~~gl~~l 81 (292)
T 1o60_A 4 KIVKIGNIDVANDKPFVLFGGM--NVLESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEEGLKIF 81 (292)
T ss_dssp CCEEETTEEECTTSCCEEEEEE--EECCCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHH
T ss_pred cEEEECCEEECCCCceEEEEec--CCccCHHHHHHHHHHHHHHhhhhCEeEEEhhhcccCCCCChHHhhhhhHHHHHHHH
Confidence 3589999999999854 44432 234566766666666655 23333
Q ss_pred HHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcC
Q 004907 135 KNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG 214 (724)
Q Consensus 135 ~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g 214 (724)
++ .++...+|++.++|--..+. ..++.++-+-|=-+|+-+ .++++++-..|
T Consensus 82 ~~--~~~~~Glp~~te~~d~~~~~-~l~~~vd~~kIgA~~~~n--------------------------~~Ll~~~a~~~ 132 (292)
T 1o60_A 82 QE--LKDTFGVKIITDVHEIYQCQ-PVADVVDIIQLPAFLARQ--------------------------TDLVEAMAKTG 132 (292)
T ss_dssp HH--HHHHHCCEEEEECCSGGGHH-HHHTTCSEEEECGGGTTC--------------------------HHHHHHHHHTT
T ss_pred HH--HHHHcCCcEEEecCCHHHHH-HHHhcCCEEEECcccccC--------------------------HHHHHHHHcCC
Confidence 33 23456688888887544433 344567777776666633 23666666889
Q ss_pred CcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEe
Q 004907 215 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 265 (724)
Q Consensus 215 ~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K 265 (724)
.|| ++--|-- .+++.|..+ +++++..|=.++.+=.-
T Consensus 133 kPV--~lk~G~~---------~t~~ei~~A----v~~i~~~Gn~~i~L~~r 168 (292)
T 1o60_A 133 AVI--NVKKPQF---------LSPSQMGNI----VEKIEECGNDKIILCDR 168 (292)
T ss_dssp CEE--EEECCTT---------SCGGGHHHH----HHHHHHTTCCCEEEEEC
T ss_pred CcE--EEeCCCC---------CCHHHHHHH----HHHHHHcCCCeEEEEEC
Confidence 999 4322210 144444443 45677778777776543
No 130
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=63.79 E-value=62 Score=32.08 Aligned_cols=112 Identities=11% Similarity=0.117 Sum_probs=70.3
Q ss_pred eEEeeccCCCCCCHHHHHHHHHHHHH---------HHHHHHHHhhhcCCCcceeecC---------CCCH--HHHHHHhh
Q 004907 104 IRVQTMTTNDTKDVAGTVEEVMRIAD---------ACFEIKNSLVQKNYNIPLVADI---------HFAP--SVALRVAE 163 (724)
Q Consensus 104 I~VQSMt~t~T~Dv~atv~Qi~~L~~---------a~~~I~~~L~~~~~~iPLVADI---------HF~~--~lAl~a~~ 163 (724)
|++|.-...+-++.+--++.....++ ..+.|++ +++..++|+++.+ .-++ +-+.++++
T Consensus 22 vscq~~~~~pl~~~~~~~~~A~a~~~~Ga~~i~~~~~~~i~~--ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~ 99 (229)
T 3q58_A 22 VSCQPVPGSPMDKPEIVAAMAQAAASAGAVAVRIEGIENLRT--VRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQ 99 (229)
T ss_dssp EECCCCTTSTTCSHHHHHHHHHHHHHTTCSEEEEESHHHHHH--HGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHH
T ss_pred EEEeCCCCCCCCCcchHHHHHHHHHHCCCcEEEECCHHHHHH--HHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHH
Confidence 56688777777887766666666666 4556666 5667899998533 2222 34556666
Q ss_pred h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHH
Q 004907 164 C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMV 242 (724)
Q Consensus 164 ~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amV 242 (724)
. +|.|=++=....+.. .+.++++.++++|+.+=..+ .
T Consensus 100 aGad~I~l~~~~~~~p~----------------------~l~~~i~~~~~~g~~v~~~v--~------------------ 137 (229)
T 3q58_A 100 AGADIIAFDASFRSRPV----------------------DIDSLLTRIRLHGLLAMADC--S------------------ 137 (229)
T ss_dssp HTCSEEEEECCSSCCSS----------------------CHHHHHHHHHHTTCEEEEEC--S------------------
T ss_pred cCCCEEEECccccCChH----------------------HHHHHHHHHHHCCCEEEEec--C------------------
Confidence 6 887744333221111 25679999999987763332 1
Q ss_pred HHHHHHHHHHHHCCCCcEE
Q 004907 243 ESAFEFARICRKLDFHNFL 261 (724)
Q Consensus 243 eSAle~~~i~e~~~F~div 261 (724)
..+.++.+++.|++-|.
T Consensus 138 --t~eea~~a~~~Gad~Ig 154 (229)
T 3q58_A 138 --TVNEGISCHQKGIEFIG 154 (229)
T ss_dssp --SHHHHHHHHHTTCSEEE
T ss_pred --CHHHHHHHHhCCCCEEE
Confidence 23556777888887664
No 131
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=63.76 E-value=31 Score=35.22 Aligned_cols=120 Identities=11% Similarity=0.097 Sum_probs=68.1
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
++++.+.. -+.+-+..|+++ ++.||| +......|. ..-+....+..-+.+.+.++.||++|..+++.+-
T Consensus 73 ~~~~~~l~-~~~~~i~~a~~ag~~~v~i----~~~~sd~~~-----~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~ 142 (298)
T 2cw6_A 73 GINYPVLT-PNLKGFEAAVAAGAKEVVI----FGAASELFT-----KKNINCSIEESFQRFDAILKAAQSANISVRGYVS 142 (298)
T ss_dssp TCBCCEEC-CSHHHHHHHHHTTCSEEEE----EEESCHHHH-----HHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCEEEEEc-CCHHhHHHHHHCCCCEEEE----EecCCHHHH-----HHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEE
Confidence 45555555 466666677787 898887 211110000 0011222344445677799999999999997763
Q ss_pred c-CCCchHHHhhcCC-CchHHHHHHHHHHHHHHHCCCCcEEEE--EecCChhHHHHHHHHHHHH
Q 004907 223 H-GSLSDRIMSYYGD-SPRGMVESAFEFARICRKLDFHNFLFS--MKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 223 ~-GSL~~~il~~yg~-t~~amVeSAle~~~i~e~~~F~diviS--~KaSnv~~~v~Ayrlla~~ 282 (724)
. -|-+. -|. ++ +-.++.++.+.++|-+.|.|. +=..+|..+-+-.+.+.++
T Consensus 143 ~~~~~~~-----~~~~~~----~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~ 197 (298)
T 2cw6_A 143 CALGCPY-----EGKISP----AKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQE 197 (298)
T ss_dssp TTTCBTT-----TBSCCH----HHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHH
T ss_pred EEeeCCc-----CCCCCH----HHHHHHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHh
Confidence 1 12211 022 33 456677888899999854443 1134566666666666655
No 132
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=63.75 E-value=4.3 Score=42.18 Aligned_cols=123 Identities=17% Similarity=0.292 Sum_probs=77.0
Q ss_pred cCCCCCeEEeecc--CCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhcCCCcceee-------------
Q 004907 98 IGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQKNYNIPLVA------------- 149 (724)
Q Consensus 98 IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~~~iPLVA------------- 149 (724)
|||+ -+.|+||. ..|..+.+.+-.++.+|.+ -+..+.+.+ .+.++|.
T Consensus 48 I~Gd-~v~V~~Lv~pg~dPH~yeptp~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~----~~~~~v~~s~gi~~~~~~~~ 122 (307)
T 3ujp_A 48 VAGD-KLVVESITRIGAEIHGYEPTPSDIVKAQDADLILYNGMNLERWFEQFLGNV----KDVPSVVLTEGIEPIPIADG 122 (307)
T ss_dssp HHTT-SSEEEESSCSSCCSSSCCCCHHHHHHHHHCSEEEECCTTSSTTHHHHHHTS----CSCCEEETTTTCCCCBCCSS
T ss_pred HcCC-ceEEEEcCCCCCCCcccCCCHHHHHHHhcCCEEEEcCCChHHHHHHHHHhC----CCCCEEEeeCCccccccccc
Confidence 5665 58999996 4678999999999999999 234444422 1222221
Q ss_pred ------c--CCCCHHHHHHHhhh-cCcc-ccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 150 ------D--IHFAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 150 ------D--IHF~~~lAl~a~~~-vdki-RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
| +.+||..|...++. .+.+ ++.|.|=..=+++ -+.|.++|+.+++.++..+..+...+..+
T Consensus 123 ~~~~~~DPHvWldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~N-------a~~~~~~L~~Ld~~~~~~l~~~p~~~~~~-- 193 (307)
T 3ujp_A 123 PYTDKPNPHAWMSPRNALVYVENIRQAFVELDPDNAKYYNAN-------AAVYSEQLKAIDRQLGADLEQVPANQRFL-- 193 (307)
T ss_dssp SSTTSBCCCCTTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH-------HHHHHHHHHHHHHHHHHHHSSSCGGGCEE--
T ss_pred cCCCCCCCCcCCCHHHHHHHHHHHHHHHHHhCchhHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhccccCCEE--
Confidence 2 23567777777765 4443 5889774221111 35699999999998888777664333333
Q ss_pred eeccCCCchHHHhhcC
Q 004907 220 GTNHGSLSDRIMSYYG 235 (724)
Q Consensus 220 GvN~GSL~~~il~~yg 235 (724)
=+.|.++ ..+.++||
T Consensus 194 v~~H~af-~Yfa~~yG 208 (307)
T 3ujp_A 194 VSCEGAF-SYLARDYG 208 (307)
T ss_dssp EEEESTT-HHHHHHTT
T ss_pred EEECchH-HHHHHHCC
Confidence 4567665 34445554
No 133
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=63.49 E-value=18 Score=37.99 Aligned_cols=117 Identities=13% Similarity=0.130 Sum_probs=72.0
Q ss_pred HHHHHHHhhhcCCCcceeecCCC-------------CH----------HHHHHHh-hh-cCccccCCCCCcchhhhhhcc
Q 004907 131 CFEIKNSLVQKNYNIPLVADIHF-------------AP----------SVALRVA-EC-FDKIRVNPGNFADRRAQFEQL 185 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVADIHF-------------~~----------~lAl~a~-~~-vdkiRINPGNig~~~k~f~~~ 185 (724)
++++++.+.+.|..+..++=.+| +. +-+++.+ +. ++.|++.||..|..
T Consensus 71 ~~~l~~~l~~~GL~i~~~~~~~f~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~G~~g~~------- 143 (394)
T 1xla_A 71 LGDFNQALKDTGLKVPMVTTNLFSHPVFKDGGFTSNDRSIRRFALAKVLHNIDLAAEMGAETFVMWGGREGSE------- 143 (394)
T ss_dssp HHHHHHHHHHHCCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECCTTCEES-------
T ss_pred HHHHHHHHHHcCCeEEEEecCccCCccccCCccCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCccc-------
Confidence 56777877788888876653222 11 1122223 23 88899999865421
Q ss_pred ccc-hHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCc-EEE
Q 004907 186 EYT-DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHN-FLF 262 (724)
Q Consensus 186 ~Yt-deey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~d-ivi 262 (724)
|. +..+.+.++++.+.+.++.+.|+++|..|||++ |+.. +. ++ ..++.+.-+.++++++.|-.| +-+
T Consensus 144 -~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~l~lE~~~~-e~----~~----~~~~~t~~~~~~li~~v~~pn~vgl 213 (394)
T 1xla_A 144 -YDGSKDLAAALDRMREGVDTAAGYIKDKGYNLRIALEPKPN-EP----RG----DIFLPTVGHGLAFIEQLEHGDIVGL 213 (394)
T ss_dssp -SGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSS-SS----SS----EESSCSHHHHHHHHTTCTTGGGEEE
T ss_pred -cccccCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCC-CC----Cc----cccCCCHHHHHHHHHHhCCCCceEE
Confidence 11 224667789999999999999999997778887 3321 00 01 112233344556778888775 766
Q ss_pred EE
Q 004907 263 SM 264 (724)
Q Consensus 263 S~ 264 (724)
-+
T Consensus 214 ~l 215 (394)
T 1xla_A 214 NP 215 (394)
T ss_dssp CC
T ss_pred EE
Confidence 55
No 134
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Probab=63.36 E-value=14 Score=39.56 Aligned_cols=67 Identities=10% Similarity=0.044 Sum_probs=52.0
Q ss_pred HHHHHHHHhhhcCCCcceeecCC--CCHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIH--FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 205 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIH--F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 205 (724)
++..+++ .+++||++|=+ .++.-+..+++ +++-|.|.|..+|.-. ...+
T Consensus 299 ~~~~l~~-----~~~ipIa~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit----------------------ea~~ 351 (427)
T 2pa6_A 299 GFAMITK-----ELDIQIVGDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLS----------------------EAVD 351 (427)
T ss_dssp HHHHHHH-----HSSSEEEESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHH----------------------HHHH
T ss_pred HHHHHHh-----hCCCeEEeCccccCCHHHHHHHHHhCCCCEEEEcccccCCHH----------------------HHHH
Confidence 5666665 38899999976 34676667766 3999999999998744 2577
Q ss_pred HHHHHHhcCCcEEEeecc
Q 004907 206 LVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~ 223 (724)
++..|+++|+++=+|-++
T Consensus 352 ia~lA~~~g~~~~~~h~~ 369 (427)
T 2pa6_A 352 AAQLAFRNGYGVVVSHRS 369 (427)
T ss_dssp HHHHHHTTTCEEEEECCS
T ss_pred HHHHHHHcCCeEEEeCCC
Confidence 999999999999786544
No 135
>3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A*
Probab=63.34 E-value=12 Score=39.67 Aligned_cols=90 Identities=13% Similarity=0.172 Sum_probs=61.2
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCC-HHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFA-PSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~ 160 (724)
+|.+.+++|= .|. .-+.+.+++-+++|++ .+..+++ .+++||.+|=... +.-+..
T Consensus 210 ~G~~~~l~vD--aN~-~~~~~~A~~~~~~l~~~~i~~iEeP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 281 (383)
T 3toy_A 210 LGPDIALMLD--FNQ-SLDPAEATRRIARLADYDLTWIEEPVPQENLSGHAAVRE-----RSEIPIQAGENWWFPRGFAE 281 (383)
T ss_dssp HCTTSEEEEE--CTT-CSCHHHHHHHHHHHGGGCCSEEECCSCTTCHHHHHHHHH-----HCSSCEEECTTCCHHHHHHH
T ss_pred hCCCCeEEEe--CCC-CCCHHHHHHHHHHHHhhCCCEEECCCCcchHHHHHHHHh-----hcCCCEEeCCCcCCHHHHHH
Confidence 4566666663 121 2245555555555555 4445554 5789999997654 455556
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+++ ++|-|.|.|...|.-. ...++...|+++|+++
T Consensus 282 ~i~~~a~d~v~ik~~~~GGit----------------------~~~~ia~~A~~~gi~~ 318 (383)
T 3toy_A 282 AIAAGASDFIMPDLMKVGGIT----------------------GWLNVAGQADAASIPM 318 (383)
T ss_dssp HHHHTCCSEECCCTTTTTHHH----------------------HHHHHHHHHHHHTCCB
T ss_pred HHHcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCEE
Confidence 665 4999999999998744 3577999999999997
No 136
>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*
Probab=63.19 E-value=60 Score=34.03 Aligned_cols=139 Identities=16% Similarity=0.093 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccc-cCCCCCcchhhhhhccccchHHHHHHhhhh
Q 004907 122 EEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIR-VNPGNFADRRAQFEQLEYTDDEYQKELQHI 199 (724)
Q Consensus 122 ~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiR-INPGNig~~~k~f~~~~Ytdeey~~ele~I 199 (724)
+++.|+...++.|++ .+++||.-|- |++..|.+|+++ ++=|= |+-++. +
T Consensus 68 eE~~Rv~pvI~~l~~-----~~~vpiSIDT-~~~~Va~aAl~aGa~iINDVsg~~~-d---------------------- 118 (314)
T 2vef_A 68 EEIQRVVPVIKAIRK-----ESDVLISIDT-WKSQVAEAALAAGADLVNDITGLMG-D---------------------- 118 (314)
T ss_dssp HHHHHHHHHHHHHHH-----HCCCEEEEEC-SCHHHHHHHHHTTCCEEEETTTTCS-C----------------------
T ss_pred HHHHHHHHHHHHHHh-----hCCceEEEeC-CCHHHHHHHHHcCCCEEEECCCCCC-C----------------------
Confidence 445554445555554 3689999996 789999999997 43331 223321 1
Q ss_pred hhhHHHHHHHHHhcCCcEEEeeccCC-CchH------------------HHhhcCCC-chH-HHHHHHHHHHHHHHCCC-
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNHGS-LSDR------------------IMSYYGDS-PRG-MVESAFEFARICRKLDF- 257 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~GS-L~~~------------------il~~yg~t-~~a-mVeSAle~~~i~e~~~F- 257 (724)
..+.+.|+++|.|+=+=-+.|. .++. -...|.+- .+. +.+...+.++.|++.|+
T Consensus 119 ----~~m~~v~a~~~~~vvlmh~~~~g~p~~~~~~~~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i~~a~~~GI~ 194 (314)
T 2vef_A 119 ----EKMPHVVAEARAQVVIMFNPVMARPQHPSSLIFPHFGFGQAFTEEELADFETLPIEELMEAFFERALARAAEAGIA 194 (314)
T ss_dssp ----TTHHHHHHHHTCEEEEECCHHHHCTTSTTTTTSCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred ----hHHHHHHHHcCCCEEEEecCCCCCCCCcccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHcCCC
Confidence 1256678899999844333320 1111 00113221 233 45667788999999999
Q ss_pred -CcEEEEE-----ecCChhHHHHHHHHHHHHhhcCCCCccccccccc
Q 004907 258 -HNFLFSM-----KASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE 298 (724)
Q Consensus 258 -~diviS~-----KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTE 298 (724)
++|+|-- |. ...-.+.+|.|.+.. ...||+=+|+.-
T Consensus 195 ~~~IilDPGiGF~kt--~~~nl~ll~~l~~l~---~~g~PvL~G~Sr 236 (314)
T 2vef_A 195 PENILLDPGIGFGLT--KKENLLLLRDLDKLH---QKGYPIFLGVSR 236 (314)
T ss_dssp GGGEEEECCTTSSCC--HHHHHHHHHTHHHHH---TTSSCBEEECSS
T ss_pred hhhEEEeCCCCcccc--hHHHHHHHHHHHHhh---cCCCCEEEEeCc
Confidence 7899874 43 333455555554331 257999999865
No 137
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=62.96 E-value=23 Score=34.38 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=79.6
Q ss_pred EEeeccCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHhhhcCCCcceee----cCC-------CCH-------
Q 004907 105 RVQTMTTNDTKDVAGTVEEVMRIAD-----------ACFEIKNSLVQKNYNIPLVA----DIH-------FAP------- 155 (724)
Q Consensus 105 ~VQSMt~t~T~Dv~atv~Qi~~L~~-----------a~~~I~~~L~~~~~~iPLVA----DIH-------F~~------- 155 (724)
.++||+-. ..+++.+++.+.++-= .++++++.|.+.|..+..+. |+. .++
T Consensus 14 ~~~~~~f~-~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~ 92 (269)
T 3ngf_A 14 ANLSTMFN-EVPFLERFRLAAEAGFGGVEFLFPYDFDADVIARELKQHNLTQVLFNMPPGDWAAGERGMAAISGREQEFR 92 (269)
T ss_dssp EETTTSCT-TSCHHHHHHHHHHTTCSEEECSCCTTSCHHHHHHHHHHTTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHH
T ss_pred eechhhhc-cCCHHHHHHHHHHcCCCEEEecCCccCCHHHHHHHHHHcCCcEEEEecCCCccccCCCCcCCCccHHHHHH
Confidence 34555554 3567766666555421 46788887777777766442 211 111
Q ss_pred ---HHHHHHhh-h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCCCchH
Q 004907 156 ---SVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDR 229 (724)
Q Consensus 156 ---~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~ 229 (724)
+-+++.++ . +..|++.|| .... ..+.+.++++.+.++++.+.|+++|+.+=|=. |+-.
T Consensus 93 ~~~~~~i~~A~~lGa~~v~~~~g-~~~~-----------~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~---- 156 (269)
T 3ngf_A 93 DNVDIALHYALALDCRTLHAMSG-ITEG-----------LDRKACEETFIENFRYAADKLAPHGITVLVEPLNTRN---- 156 (269)
T ss_dssp HHHHHHHHHHHHTTCCEEECCBC-BCTT-----------SCHHHHHHHHHHHHHHHHHHHGGGTCEEEECCCCTTT----
T ss_pred HHHHHHHHHHHHcCCCEEEEccC-CCCC-----------CCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCccc----
Confidence 22333333 3 788999999 3221 12455677888889999999999997543322 3210
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 230 IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 230 il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
.|..++.+.-+..+++++.|-.++.+-+
T Consensus 157 -------~~~~~~~~~~~~~~l~~~v~~~~vg~~~ 184 (269)
T 3ngf_A 157 -------MPGYFIVHQLEAVGLVKRVNRPNVAVQL 184 (269)
T ss_dssp -------STTBSCCCHHHHHHHHHHHCCTTEEEEE
T ss_pred -------CccchhcCHHHHHHHHHHhCCCCCCeEE
Confidence 0001122333456778888888888877
No 138
>3ik4_A Mandelate racemase/muconate lactonizing protein; structural genomics, enolase, epimerase, PSI-2, protein STRU initiative; 2.10A {Herpetosiphon aurantiacus atcc 23779}
Probab=62.91 E-value=11 Score=39.58 Aligned_cols=79 Identities=15% Similarity=0.119 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHH--HH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCC
Q 004907 116 DVAGTVEEVMRI--AD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGN 174 (724)
Q Consensus 116 Dv~atv~Qi~~L--~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGN 174 (724)
|.+.+++-+++| ++ .+..+++ .+++||.+|=.+ +..-+..+++ ++|-|.|.|..
T Consensus 199 ~~~~A~~~~~~L~~~~~~i~~iEeP~~~~d~~~~~~l~~-----~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~ 273 (365)
T 3ik4_A 199 DVERALAFCAACKAESIPMVLFEQPLPREDWAGMAQVTA-----QSGFAVAADESARSAHDVLRIAREGTASVINIKLMK 273 (365)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCSCTTCHHHHHHHHH-----HSSSCEEESTTCSSHHHHHHHHHHTCCSEEEECHHH
T ss_pred CHHHHHHHHHHHhhCCCCceEEECCCCcccHHHHHHHHh-----hCCCCEEECCCCCCHHHHHHHHHhCCCCEEEEcCCc
Confidence 455666666667 43 4445554 588999999664 4544555555 49999999999
Q ss_pred CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 175 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 175 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
|.-. ...+++..|+++|+++=+|..
T Consensus 274 -GGit----------------------~~~~i~~~A~~~gi~~~~~~~ 298 (365)
T 3ik4_A 274 -AGVA----------------------EGLKMIAIAQAAGLGLMIGGM 298 (365)
T ss_dssp -HCHH----------------------HHHHHHHHHHHHTCEEEECCS
T ss_pred -cCHH----------------------HHHHHHHHHHHcCCeEEecCC
Confidence 8744 357799999999999977653
No 139
>2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B
Probab=62.59 E-value=8.7 Score=40.27 Aligned_cols=59 Identities=12% Similarity=0.146 Sum_probs=47.6
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++||++|=.+ ++.-+..+++ .+|-|.|.|+.+|.-. .+.+++..|+++|++
T Consensus 233 ~~~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGi~----------------------~~~~i~~~A~~~g~~ 290 (378)
T 2qdd_A 233 ARRVANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNRVGGLT----------------------RARQIRDFGVSVGWQ 290 (378)
T ss_dssp HTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHHTCE
T ss_pred HHhCCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccccCCHH----------------------HHHHHHHHHHHcCCe
Confidence 34678999999765 5666777775 3999999999998844 367899999999999
Q ss_pred EEEe
Q 004907 217 VRIG 220 (724)
Q Consensus 217 IRIG 220 (724)
+=+|
T Consensus 291 ~~~~ 294 (378)
T 2qdd_A 291 MHIE 294 (378)
T ss_dssp EEEC
T ss_pred EEec
Confidence 8777
No 140
>3s5s_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium; 2.40A {Sorangium cellulosum}
Probab=62.45 E-value=12 Score=39.92 Aligned_cols=79 Identities=14% Similarity=0.111 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHH--HH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCC
Q 004907 116 DVAGTVEEVMRI--AD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGN 174 (724)
Q Consensus 116 Dv~atv~Qi~~L--~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGN 174 (724)
+.+.+++-+.+| ++ ++..+++ .+++||.+|=.+ +..-+..+++ ++|-|.|.|..
T Consensus 200 ~~~~A~~~~~~L~~~~~~i~~iEeP~~~~d~~~~~~l~~-----~~~iPIa~dEs~~~~~~~~~~i~~~a~d~v~~k~~~ 274 (389)
T 3s5s_A 200 TAGEALALVAHARRLGADVALLEQPVPRDDWDGMKEVTR-----RAGVDVAADESAASAEDVLRVAAERAATVVNIKLMK 274 (389)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEECCSCTTCHHHHHHHHH-----HSSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHH
T ss_pred CHHHHHHHHHHHhhCCCCeEEEECCCCcccHHHHHHHHh-----hCCCCEEECCCCCCHHHHHHHHHcCCCCEEEecCCC
Confidence 456666667777 43 4555554 588999999654 4444445554 49999999999
Q ss_pred CcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 175 FADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 175 ig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
|+-. ...++...|+++|+++=+|..
T Consensus 275 -GGit----------------------~~~~i~~~A~~~gi~~~~~~~ 299 (389)
T 3s5s_A 275 -GGIA----------------------EALDIAAVARAAGLGLMIGGM 299 (389)
T ss_dssp -HHHH----------------------HHHHHHHHHHHTTCEEEECCS
T ss_pred -CCHH----------------------HHHHHHHHHHHcCCeEEecCC
Confidence 8743 356799999999999977654
No 141
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=62.17 E-value=18 Score=36.36 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=21.2
Q ss_pred HHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 194 KELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 194 ~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
+.++++.+.+.++.+.|+++|+ +|++
T Consensus 143 ~~~~~~~~~l~~l~~~a~~~Gv--~l~l 168 (305)
T 3obe_A 143 DDAKVVSEIFNRAGEITKKAGI--LWGY 168 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC--EEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCC--EEEE
Confidence 4567788889999999999997 5565
No 142
>2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40}
Probab=61.77 E-value=8.9 Score=40.00 Aligned_cols=100 Identities=11% Similarity=0.107 Sum_probs=65.9
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHH-HH----------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhhh-
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRI-AD----------ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC- 164 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L-~~----------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~~- 164 (724)
+|.+.|++|=- | ..-+.+.+++-+++| ++ .....++ +++.+++|+++|=.+ ++.-+..+++.
T Consensus 187 ~g~~~~l~vDa--n-~~~~~~~a~~~~~~l~~~~~i~iE~P~~~~~~~~~--l~~~~~iPI~~dE~~~~~~~~~~~i~~~ 261 (371)
T 2ps2_A 187 QQPDEFFIVDA--N-GKLSVETALRLLRLLPHGLDFALEAPCATWRECIS--LRRKTDIPIIYDELATNEMSIVKILADD 261 (371)
T ss_dssp CCTTCEEEEEC--T-TBCCHHHHHHHHHHSCTTCCCEEECCBSSHHHHHH--HHTTCCSCEEESTTCCSHHHHHHHHHHT
T ss_pred cCCCCEEEEEC--C-CCcCHHHHHHHHHHHHhhcCCcCcCCcCCHHHHHH--HHhhCCCCEEeCCCcCCHHHHHHHHHhC
Confidence 45566665521 1 223455555555555 32 1122222 334678999999765 66777777764
Q ss_pred -cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccC
Q 004907 165 -FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG 224 (724)
Q Consensus 165 -vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~G 224 (724)
+|-|.|.|+.+|.-. ...++++.|+++|+++=+|..++
T Consensus 262 ~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~~~~~~~~e 300 (371)
T 2ps2_A 262 AAEGIDLKISKAGGLT----------------------RGRRQRDICLAAGYSVSVQETCG 300 (371)
T ss_dssp CCSEEEEEHHHHTSHH----------------------HHHHHHHHHHHHTCEEEEECSSC
T ss_pred CCCEEEechhhcCCHH----------------------HHHHHHHHHHHcCCeEEecCCCc
Confidence 999999999998844 35779999999999997776443
No 143
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate dehydratase related protein, enzyme funct intitiative, lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis} PDB: 3tw9_A 3twa_A 3twb_A*
Probab=61.52 E-value=12 Score=40.56 Aligned_cols=61 Identities=8% Similarity=-0.001 Sum_probs=47.0
Q ss_pred HHHHHHHHhhhcCCCcceeecCC-CCHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
.+..|++ .+++||.+|=. +++.-+..+++ ++|-|.|.|+..|.-. ...++
T Consensus 282 ~~~~l~~-----~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit----------------------~~~~i 334 (440)
T 3t6c_A 282 WLKMLRQ-----QSSTPIAMGELFVNVNEWKPLIDNKLIDYIRCHISSIGGIT----------------------PAKKI 334 (440)
T ss_dssp GHHHHHH-----HCCSCEEECTTCCSHHHHHHHHHTTCCSEECCCGGGGTSHH----------------------HHHHH
T ss_pred HHHHHHh-----hcCCCEEeCcccCCHHHHHHHHHcCCccceeechhhhCCHH----------------------HHHHH
Confidence 4445554 58899999955 45666667775 3999999999998844 35779
Q ss_pred HHHHHhcCCcE
Q 004907 207 VEKCKKYGRAV 217 (724)
Q Consensus 207 v~~ake~g~~I 217 (724)
...|+++|+++
T Consensus 335 a~~A~~~gi~~ 345 (440)
T 3t6c_A 335 AIYSELNGVRT 345 (440)
T ss_dssp HHHHHHTTCEE
T ss_pred HHHHHHcCCEE
Confidence 99999999987
No 144
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Probab=61.31 E-value=28 Score=35.88 Aligned_cols=92 Identities=14% Similarity=0.063 Sum_probs=64.2
Q ss_pred CCCCCeEEeeccCCCCCCHHHHHHHHHHHHH------------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHH
Q 004907 99 GSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD------------------ACFEIKNSLVQKNYNIPLVADIHF-APSVAL 159 (724)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~------------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl 159 (724)
|.+.+++| .. | ..-+.+.+++-+.+|++ .+..+++ .+++|+++|=.+ ++.-+.
T Consensus 180 g~~~~l~v-Da-n-~~~~~~~a~~~~~~l~~~~i~~~~iE~P~~~~~~~~~~~l~~-----~~~ipia~dE~~~~~~~~~ 251 (345)
T 2zad_A 180 TRGAKYIV-DA-N-MGYTQKEAVEFARAVYQKGIDIAVYEQPVRREDIEGLKFVRF-----HSPFPVAADESARTKFDVM 251 (345)
T ss_dssp STTCEEEE-EC-T-TCSCHHHHHHHHHHHHHTTCCCSEEECCSCTTCHHHHHHHHH-----HSSSCEEESTTCCSHHHHH
T ss_pred CCCCeEEE-EC-C-CCCCHHHHHHHHHHHHhcCCCeeeeeCCCCcccHHHHHHHHH-----hCCCCEEEeCCcCCHHHHH
Confidence 55677776 21 2 22356666666666665 3344444 478999999765 567777
Q ss_pred HHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 160 RVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 160 ~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
.+++. +|-|.|.|+. |.-. ...+++..|+++|+++=+|.
T Consensus 252 ~~i~~~~~d~v~ik~~~-GGit----------------------~~~~i~~~A~~~g~~~~~~~ 292 (345)
T 2zad_A 252 RLVKEEAVDYVNIKLMK-SGIS----------------------DALAIVEIAESSGLKLMIGC 292 (345)
T ss_dssp HHHHHTCCSEEEECHHH-HHHH----------------------HHHHHHHHHHTTTCEEEECC
T ss_pred HHHHhCCCCEEEEeccc-ccHH----------------------HHHHHHHHHHHcCCeEEEec
Confidence 77753 9999999999 8743 25779999999999987764
No 145
>3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica}
Probab=60.88 E-value=12 Score=39.90 Aligned_cols=94 Identities=10% Similarity=0.140 Sum_probs=63.9
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH-------------H-HHHHHHHhhhcCCCcceeecCCC-CHHHHHHHh
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD-------------A-CFEIKNSLVQKNYNIPLVADIHF-APSVALRVA 162 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------a-~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~ 162 (724)
+|.+.++.|= .|. .-|.+.+++=+++|++ . +...++ +++.+++|+.+|=.+ ++.-+..++
T Consensus 196 ~g~~~~l~vD--aN~-~~~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~~--l~~~~~iPIa~dE~~~~~~~~~~~i 270 (392)
T 3ddm_A 196 LGAATPLMAD--ANQ-GWDLPRARQMAQRLGPAQLDWLEEPLRADRPAAEWAE--LAQAAPMPLAGGENIAGVAAFETAL 270 (392)
T ss_dssp HCSSSCEEEE--CTT-CCCHHHHHHHHHHHGGGCCSEEECCSCTTSCHHHHHH--HHHHCSSCEEECTTCCSHHHHHHHH
T ss_pred cCCCceEEEe--CCC-CCCHHHHHHHHHHHHHhCCCEEECCCCccchHHHHHH--HHHhcCCCEEeCCCCCCHHHHHHHH
Confidence 4666777773 222 2245555555556655 3 444443 344688999999664 566666766
Q ss_pred h--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 163 E--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 163 ~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
+ .+|-|.|.|...|.-. ...++...|+++|+++=
T Consensus 271 ~~~a~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~ 306 (392)
T 3ddm_A 271 AARSLRVMQPDLAKWGGFS----------------------GCLPVARAVVAAGLRYC 306 (392)
T ss_dssp HHTCEEEECCCTTTTTHHH----------------------HHHHHHHHHHHTTCEEC
T ss_pred HcCCCCEEEeCcchhCCHH----------------------HHHHHHHHHHHcCCEEE
Confidence 5 3999999999998743 35779999999999983
No 146
>3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A*
Probab=60.51 E-value=11 Score=39.53 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=44.8
Q ss_pred CCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 142 NYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 142 ~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
.+++|+.+|=.+ ++.-+..+++ .+|-|.|.|...|- . ...++...|+++|+++=
T Consensus 234 ~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~Gi-t----------------------~~~~ia~~A~~~gi~~~ 290 (367)
T 3dg3_A 234 QLDMPFIADESVPTPADVTREVLGGSATAISIKTARTGF-T----------------------GSTRVHHLAEGLGLDMV 290 (367)
T ss_dssp HCSSCEEECTTCSSHHHHHHHHHHTSCSEEEECHHHHTT-H----------------------HHHHHHHHHHHHTCEEE
T ss_pred hCCCCEEecCCcCCHHHHHHHHHcCCCCEEEeehhhhhH-H----------------------HHHHHHHHHHHcCCeEE
Confidence 578999999665 4666666666 39999999988832 2 25679999999999997
Q ss_pred Eeecc
Q 004907 219 IGTNH 223 (724)
Q Consensus 219 IGvN~ 223 (724)
+|-++
T Consensus 291 ~~~~~ 295 (367)
T 3dg3_A 291 MGNQI 295 (367)
T ss_dssp ECCSS
T ss_pred ECCcC
Confidence 76543
No 147
>2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A
Probab=60.17 E-value=12 Score=39.39 Aligned_cols=59 Identities=12% Similarity=0.286 Sum_probs=47.4
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++|+++|=.+ ++.-+..+++ .+|-|.|.|..+|.-. ...+++..|+++|++
T Consensus 232 ~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~g~~ 289 (382)
T 2gdq_A 232 RSRLSVPVAGGENMKGPAQYVPLLSQRCLDIIQPDVMHVNGID----------------------EFRDCLQLARYFGVR 289 (382)
T ss_dssp HTTCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH----------------------HHHHHHHHHHHHTCE
T ss_pred HhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH----------------------HHHHHHHHHHHcCCE
Confidence 34678999999765 5666777775 3999999999998844 357799999999999
Q ss_pred EEEe
Q 004907 217 VRIG 220 (724)
Q Consensus 217 IRIG 220 (724)
+=+|
T Consensus 290 ~~~~ 293 (382)
T 2gdq_A 290 ASAH 293 (382)
T ss_dssp ECCC
T ss_pred Eeec
Confidence 8777
No 148
>3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A*
Probab=59.72 E-value=17 Score=38.52 Aligned_cols=59 Identities=22% Similarity=0.229 Sum_probs=46.6
Q ss_pred CCCcceeecCC-CCHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 142 NYNIPLVADIH-FAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 142 ~~~iPLVADIH-F~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
.+++|+.+|=. ++..-+..+++ ++|-|.|.|...|+-. ...++...|+++|+++=
T Consensus 237 ~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGi~----------------------~~~~ia~~A~~~gi~~~ 294 (379)
T 3r0u_A 237 FSNIPVVADESVFDAKDAERVIDEQACNMINIKLAKTGGIL----------------------EAQKIKKLADSAGISCM 294 (379)
T ss_dssp HCSSCEEESTTCSSHHHHHHHHHTTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCEEE
T ss_pred cCCCCEEeCCccCCHHHHHHHHHcCCCCEEEECccccCCHH----------------------HHHHHHHHHHHcCCEEE
Confidence 58899999965 45556666776 4999999999998743 25779999999999997
Q ss_pred Eeec
Q 004907 219 IGTN 222 (724)
Q Consensus 219 IGvN 222 (724)
+|.+
T Consensus 295 ~~~~ 298 (379)
T 3r0u_A 295 VGCM 298 (379)
T ss_dssp ECCC
T ss_pred EeCC
Confidence 7754
No 149
>4e4f_A Mannonate dehydratase; magnesium binding, enzyme function initiative, isomerase; 2.00A {Pectobacterium carotovorum subsp}
Probab=58.97 E-value=16 Score=39.42 Aligned_cols=90 Identities=11% Similarity=0.052 Sum_probs=62.6
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCC-CHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHF-APSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~ 160 (724)
+|.+.|+.|= .|. --+.+.+++-+++|++ .+..|++ .+++||++|=.+ ++.-+..
T Consensus 225 ~G~d~~L~vD--aN~-~~~~~~A~~~~~~L~~~~i~~iEeP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 296 (426)
T 4e4f_A 225 FGFNEHLLHD--MHH-RLTPIEAARFGKSVEDYRLFWMEDPTPAENQACFRLIRQ-----HTVTPIAVGEVFNSIWDCKQ 296 (426)
T ss_dssp HTTSSEEEEE--CTT-CSCHHHHHHHHHHTGGGCCSEEECCSCCSSGGGGHHHHT-----TCCSCEEECTTCCSGGGTHH
T ss_pred hCCCCEEEEE--CCC-CCCHHHHHHHHHHHhhcCCCEEECCCChHHHHHHHHHHh-----cCCCCEEeCCCcCCHHHHHH
Confidence 4667777773 232 2355555555566655 3444444 689999999654 4656666
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+++ ++|-|.|.|+..|.-. ...++...|+++|+++
T Consensus 297 ~i~~ga~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~v 333 (426)
T 4e4f_A 297 LIEEQLIDYIRTTITHAGGIT----------------------GMRRIADFASLYQVRT 333 (426)
T ss_dssp HHHTTCCSEECCCTTTTTHHH----------------------HHHHHHHHHHTTTCEE
T ss_pred HHHcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCEE
Confidence 665 4999999999998744 3577999999999986
No 150
>3v5c_A Mandelate racemase/muconate lactonizing protein; enolase fold, galacturonate dehydratase, double Mg site, LYA; 1.53A {Paenibacillus SP} PDB: 3v5f_A* 3p3b_A* 3ops_A* 3n4f_A* 3qpe_A*
Probab=58.92 E-value=13 Score=39.54 Aligned_cols=70 Identities=16% Similarity=0.031 Sum_probs=48.8
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLV 207 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv 207 (724)
.+..+++++...++++|+.+|=++...-....++ ++|-|++.|.. |.-. ...++.
T Consensus 242 ~~~~l~~~~~~~~~~ipIa~gE~~~~~~~~~li~~~a~dii~~d~~~-GGit----------------------ea~kia 298 (392)
T 3v5c_A 242 LYEDLKEWLGQRGQNVLIADGEGLASPHLIEWATRGRVDVLQYDIIW-PGFT----------------------HWMELG 298 (392)
T ss_dssp HHHHHHHHHHHHTCCCEEEECCSSCCTTHHHHHHTTSCCEECCBTTT-BCHH----------------------HHHHHH
T ss_pred HHHHHHHhhccCCCCCcEECCCcccHHHHHHHHHcCCCcEEEeCCCC-CCHH----------------------HHHHHH
Confidence 4556665544446889999986655333344554 49999999997 7522 357799
Q ss_pred HHHHhcCCcEEEeec
Q 004907 208 EKCKKYGRAVRIGTN 222 (724)
Q Consensus 208 ~~ake~g~~IRIGvN 222 (724)
..|+.+|+++=++.+
T Consensus 299 ~~A~~~gv~~~~h~~ 313 (392)
T 3v5c_A 299 EKLDAHGLRSAPHCY 313 (392)
T ss_dssp HHHHHTTCEECCBCC
T ss_pred HHHHHcCCeEEecCC
Confidence 999999999866653
No 151
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Probab=58.90 E-value=34 Score=35.69 Aligned_cols=97 Identities=14% Similarity=0.351 Sum_probs=62.7
Q ss_pred eEEEeeeecCCCCC-eEEeeccCCCCCCHHHHHHHHHHHHH---------------------------------HHHHHH
Q 004907 90 TVMVGNVAIGSEHP-IRVQTMTTNDTKDVAGTVEEVMRIAD---------------------------------ACFEIK 135 (724)
Q Consensus 90 ~V~VG~V~IGG~~P-I~VQSMt~t~T~Dv~atv~Qi~~L~~---------------------------------a~~~I~ 135 (724)
.|.||++.||+++| ++|==.+.-. |.+..++-..+|.+ +++.++
T Consensus 4 ~~~~~~i~iG~~~~~~vIaGPCsie--~~~~~~e~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~ 81 (288)
T 3tml_A 4 SMKLCDFEVGLDQPFFLIAGTCVVE--SEQMTIDTAGRLKEICEKLNVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILS 81 (288)
T ss_dssp CEEETTEEESTTSCCEEEEECSBCC--CHHHHHHHHHHHHHHHHHHTCCEEEECBC--------------CHHHHHHHHH
T ss_pred eEEECCEEECCCCceEEEEeCCcCC--CHHHHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcCCcCHHHHHHHHH
Confidence 58899999999985 5555445443 34444444343333 344444
Q ss_pred HHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC
Q 004907 136 NSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 215 (724)
Q Consensus 136 ~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 215 (724)
+ .++...+|++.++|--..+. ...+.+|-+-|--+|+-+ .++++++-..|.
T Consensus 82 ~--~~~e~Glp~~tev~d~~~v~-~l~~~vd~lkIgA~~~~n--------------------------~~LLr~~a~~gk 132 (288)
T 3tml_A 82 E--VKRQLGLPVLTDVHSIDEIE-QVASVVDVLQTPAFLCRQ--------------------------TDFIHACARSGK 132 (288)
T ss_dssp H--HHHHHCCCEEEECCSGGGHH-HHHHHCSEEEECGGGTTC--------------------------HHHHHHHHTSSS
T ss_pred H--HHHhcCCeEEEEeCCHHHHH-HHHHhCCEEEECcccccC--------------------------HHHHHHHHccCC
Confidence 4 34467799999997655544 445668888888877743 235666778899
Q ss_pred cE
Q 004907 216 AV 217 (724)
Q Consensus 216 ~I 217 (724)
||
T Consensus 133 PV 134 (288)
T 3tml_A 133 PV 134 (288)
T ss_dssp CE
T ss_pred cE
Confidence 98
No 152
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP}
Probab=58.46 E-value=12 Score=40.23 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCC-HHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
.+..|++ .+++||.+|=.+. +.-+..+++ ++|-|.|.|+..|.-. ...++
T Consensus 264 ~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ll~~ga~d~v~~k~~~~GGit----------------------~~~ki 316 (422)
T 3tji_A 264 WLEQVRQ-----QSCVPLALGELFNNPAEWHDLIVNRRIDFIRCHVSQIGGIT----------------------PALKL 316 (422)
T ss_dssp GHHHHHH-----HCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHH----------------------HHHHH
T ss_pred HHHHHHh-----hCCCCEEEeCCcCCHHHHHHHHhcCCCCEEecCccccCCHH----------------------HHHHH
Confidence 4445555 5889999996544 555666665 4999999999998844 35789
Q ss_pred HHHHHhcCCcE
Q 004907 207 VEKCKKYGRAV 217 (724)
Q Consensus 207 v~~ake~g~~I 217 (724)
...|+.+|+++
T Consensus 317 a~lA~a~gv~v 327 (422)
T 3tji_A 317 AHLCQAFGVRL 327 (422)
T ss_dssp HHHHHHTTCEE
T ss_pred HHHHHHcCCEE
Confidence 99999999987
No 153
>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*
Probab=58.45 E-value=47 Score=36.68 Aligned_cols=152 Identities=13% Similarity=0.072 Sum_probs=87.4
Q ss_pred CCHHHHHHHHHHHHH------------------------HHHH---HHHHhhh---cC-CCcceeecCCCCHHHHHHHhh
Q 004907 115 KDVAGTVEEVMRIAD------------------------ACFE---IKNSLVQ---KN-YNIPLVADIHFAPSVALRVAE 163 (724)
Q Consensus 115 ~Dv~atv~Qi~~L~~------------------------a~~~---I~~~L~~---~~-~~iPLVADIHF~~~lAl~a~~ 163 (724)
.|.++.+++..++.+ -+.. +.+.|.+ +. .++||.-|- |++..|.+|++
T Consensus 209 ~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~Vs~~EE~~Rv~pvI~~l~~~~~~~~~~vpISIDT-~~~~VaeaAL~ 287 (442)
T 3mcm_A 209 FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKPISIEEEFNKLNEFLEYFKSQLANLIYKPLVSIDT-RKLEVMQKILA 287 (442)
T ss_dssp SCCCHHHHHHHHHHHHTCSEEEEECCCCCC----CCHHHHHHHHHHHHHHHHHHTTTCSSCCEEEEEC-CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhccccCCCCeEEEeC-CCHHHHHHHHh
Confidence 567888999998877 1111 1222333 12 479999997 78999999998
Q ss_pred hcC--ccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHH-hhcCCCchH
Q 004907 164 CFD--KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM-SYYGDSPRG 240 (724)
Q Consensus 164 ~vd--kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il-~~yg~t~~a 240 (724)
.+. .+-||-=+- . ....+.+.|+++|.|+=+=-+.|- ++.+- ..|.|--+.
T Consensus 288 ~~aGa~i~INDVsg-~------------------------~d~~m~~v~a~~g~~vVlMh~~G~-P~tmq~~~y~dvv~e 341 (442)
T 3mcm_A 288 KHHDIIWMINDVEC-N------------------------NIEQKAQLIAKYNKKYVIIHNLGI-TDRNQYLDKENAIDN 341 (442)
T ss_dssp HHGGGCCEEEECCC-T------------------------THHHHHHHHHHHTCEEEEECC-----------------CT
T ss_pred hCCCCCEEEEcCCC-C------------------------CChHHHHHHHHhCCeEEEECCCCC-CccccccCcccHHHH
Confidence 321 122443221 1 123578889999999855444442 33221 126666677
Q ss_pred HHHHHHHHHHHHHHCCC--CcEEEEE-----ecC-ChhHHHHHHHHHHHHhhcCCCCccccccccc
Q 004907 241 MVESAFEFARICRKLDF--HNFLFSM-----KAS-NPVVMVQAYRLLVAEMYVHGWDYPLHLGVTE 298 (724)
Q Consensus 241 mVeSAle~~~i~e~~~F--~diviS~-----KaS-nv~~~v~Ayrlla~~m~~~g~dYPLHLGVTE 298 (724)
+.+...+.++.|++.|. ++|++-- |+. .-..+++..+.|.+. ..||+=+|+.=
T Consensus 342 v~~~l~~~i~~a~~aGI~~~~IilDPGiGF~Kt~~~nl~lL~~l~~l~~~-----lg~PvLvG~SR 402 (442)
T 3mcm_A 342 VCDYIEQKKQILLKHGIAQQNIYFDIGFGFGKKSDTARYLLENIIEIKRR-----LELKALVGHSR 402 (442)
T ss_dssp HHHHHHHHHHHHHHHTCCGGGEEEECCCC------------CCHHHHHHH-----HTSEEEECCTT
T ss_pred HHHHHHHHHHHHHHcCCCHHHEEEeCCCCCCCCHHHHHHHHHHHHHHHhh-----CCCcEEEEech
Confidence 88889999999999999 7888642 332 223455666666554 48999998853
No 154
>2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus}
Probab=58.42 E-value=9.7 Score=39.61 Aligned_cols=67 Identities=12% Similarity=0.135 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
.+..+++ .+++|+++|=.+ ++.-+..+++. +|-|.|.|..+|.-. ...++
T Consensus 223 ~~~~l~~-----~~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit----------------------~~~~i 275 (369)
T 2zc8_A 223 DHAKLQR-----ELSTPICLDESLTGAEKARKAIELGAGRVFNVKPARLGGHG----------------------ESLRV 275 (369)
T ss_dssp HHHHHHH-----HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHH----------------------HHHHH
T ss_pred HHHHHHh-----hCCCCEEEcCccCCHHHHHHHHHhCCCCEEEEchhhhCCHH----------------------HHHHH
Confidence 5566665 478999999764 56666677753 999999999998743 25779
Q ss_pred HHHHHhcCCcEEEeecc
Q 004907 207 VEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 207 v~~ake~g~~IRIGvN~ 223 (724)
+..|+++|+++=+|-+.
T Consensus 276 ~~~A~~~g~~~~~~~~~ 292 (369)
T 2zc8_A 276 HALAESAGIPLWMGGML 292 (369)
T ss_dssp HHHHHHTTCCEEECCCC
T ss_pred HHHHHHcCCcEEecCcc
Confidence 99999999997555433
No 155
>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
Probab=58.20 E-value=24 Score=37.83 Aligned_cols=90 Identities=17% Similarity=0.278 Sum_probs=63.7
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCC-CcceeecCCC-CHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNY-NIPLVADIHF-APSVAL 159 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~-~iPLVADIHF-~~~lAl 159 (724)
+|.+.||.|=- | ..-+.+.+++-+++|++ .+..|++ .. +|||++|=.. ++.-+.
T Consensus 239 ~G~d~~l~vDa--n-~~~~~~~a~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~~iPIa~dE~~~~~~~~~ 310 (441)
T 2hxt_A 239 IGPDIAMAVDA--N-QRWDVGPAIDWMRQLAEFDIAWIEEPTSPDDVLGHAAIRQ-----GITPVPVSTGEHTQNRVVFK 310 (441)
T ss_dssp HCSSSEEEEEC--T-TCCCHHHHHHHHHTTGGGCCSCEECCSCTTCHHHHHHHHH-----HHTTSCEEECTTCCSHHHHH
T ss_pred cCCCCeEEEEC--C-CCCCHHHHHHHHHHHHhcCCCeeeCCCCHHHHHHHHHHHh-----hCCCCCEEEeCCcCCHHHHH
Confidence 56677776631 2 23356666666666655 4556655 33 6999999764 566677
Q ss_pred HHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 160 RVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 160 ~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
..++. +|-|.|.|..+|.-. ...++...|+++|+++
T Consensus 311 ~~i~~~~~d~v~ik~~~~GGit----------------------e~~~ia~~A~~~g~~~ 348 (441)
T 2hxt_A 311 QLLQAGAVDLIQIDAARVGGVN----------------------ENLAILLLAAKFGVRV 348 (441)
T ss_dssp HHHHHTCCSEECCCTTTSSHHH----------------------HHHHHHHHHHHTTCEE
T ss_pred HHHHcCCCCEEEeCcceeCCHH----------------------HHHHHHHHHHHcCCeE
Confidence 77663 999999999998743 3577999999999997
No 156
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=58.08 E-value=29 Score=33.20 Aligned_cols=130 Identities=13% Similarity=0.053 Sum_probs=76.3
Q ss_pred CeEEeeccCCCCCCHHHHHHHHHHHHH------------------HHHHHHHHhhhcCCCcceee-cCCCC---------
Q 004907 103 PIRVQTMTTNDTKDVAGTVEEVMRIAD------------------ACFEIKNSLVQKNYNIPLVA-DIHFA--------- 154 (724)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~~L~~------------------a~~~I~~~L~~~~~~iPLVA-DIHF~--------- 154 (724)
++.+++.+ ....+.+..++.+.++-= .++++++.|.+.+..+.-+. ...|+
T Consensus 8 ~lg~~~~~-~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~ 86 (272)
T 2q02_A 8 RFCINRKI-APGLSIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKK 86 (272)
T ss_dssp GEEEEGGG-CTTSCHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHH
T ss_pred hhhhcccc-cCCCCHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHH
Confidence 45666666 334456555555443211 25567777777776654332 12232
Q ss_pred HHHHHHHhh-h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhh-hhhHHHHHHHHHhcCCcEEEee-ccCCCchHH
Q 004907 155 PSVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHI-EEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRI 230 (724)
Q Consensus 155 ~~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I-~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~i 230 (724)
.+-+++.++ . +..|++.||+.+. +.++++ .+.++++.+.|+++|+ +|++ |++ -+.
T Consensus 87 ~~~~i~~a~~lG~~~v~~~~g~~~~----------------~~~~~~~~~~l~~l~~~a~~~gv--~l~~E~~~-~~~-- 145 (272)
T 2q02_A 87 TEGLLRDAQGVGARALVLCPLNDGT----------------IVPPEVTVEAIKRLSDLFARYDI--QGLVEPLG-FRV-- 145 (272)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCSSB----------------CCCHHHHHHHHHHHHHHHHTTTC--EEEECCCC-STT--
T ss_pred HHHHHHHHHHhCCCEEEEccCCCch----------------hHHHHHHHHHHHHHHHHHHHcCC--EEEEEecC-CCc--
Confidence 123333333 3 8889999997642 234566 7788999999999996 5676 554 110
Q ss_pred HhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 231 MSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 231 l~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
.+..++ -+..+++++.| .++.+-+
T Consensus 146 --~~~~~~-------~~~~~l~~~v~-~~~g~~~ 169 (272)
T 2q02_A 146 --SSLRSA-------VWAQQLIREAG-SPFKVLL 169 (272)
T ss_dssp --CSCCCH-------HHHHHHHHHHT-CCCEEEE
T ss_pred --ccccCH-------HHHHHHHHHhC-cCeEEEE
Confidence 112333 34556778888 8888888
No 157
>4hnl_A Mandelate racemase/muconate lactonizing enzyme; dehydratase, magnesium binding, enzyme function initiative,; 1.48A {Enterococcus gallinarum EG2} PDB: 3s47_A
Probab=57.14 E-value=13 Score=39.62 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=45.5
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++||.+|=++ +..-+...++ ++|-|.|.+..+|.-. ...+++..|+.+|++
T Consensus 268 ~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~~d~~~~GGit----------------------e~~~ia~~A~~~gi~ 325 (421)
T 4hnl_A 268 RSQSATPIATGELFNNPMEWQELVKNRQIDFMRAHVSQIGGIT----------------------PALKLAHFCDAMGVR 325 (421)
T ss_dssp HTTCCCCEEECTTCCSGGGTHHHHHTTCCSEECCCGGGGTSHH----------------------HHHHHHHHHHHTTCE
T ss_pred HhcCCCCeecCcceehhHHHHHHHhcCCceEEEeCCCCCCCHH----------------------HHHHHHHHHHHCCCe
Confidence 34689999999765 3444455665 3999999999998744 357899999999998
Q ss_pred EEEee
Q 004907 217 VRIGT 221 (724)
Q Consensus 217 IRIGv 221 (724)
+=++.
T Consensus 326 v~~h~ 330 (421)
T 4hnl_A 326 IAWHT 330 (421)
T ss_dssp ECCCC
T ss_pred EEEeC
Confidence 85543
No 158
>3qld_A Mandelate racemase/muconate lactonizing protein; structural genomics, PSI-2, isomerase; HET: MSE; 1.85A {Alicyclobacillus acidocaldarius LAA1}
Probab=57.08 E-value=11 Score=39.94 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCC-HHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
++..+++ .+++||.+|=.+. ..-...+++ ++|-|.|.|..+|.-. ...++
T Consensus 231 ~~~~l~~-----~~~ipIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit----------------------~~~~i 283 (388)
T 3qld_A 231 DLAKLQA-----SLRTPVCLDESVRSVRELKLTARLGAARVLNVKPGRLGGFG----------------------ATLRA 283 (388)
T ss_dssp HHHHHHH-----HCSSCEEESTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHH----------------------HHHHH
T ss_pred HHHHHHH-----hCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEECchhhCCHH----------------------HHHHH
Confidence 4455555 5889999996643 444445554 4999999999998743 35779
Q ss_pred HHHHHhcCCcEEEe
Q 004907 207 VEKCKKYGRAVRIG 220 (724)
Q Consensus 207 v~~ake~g~~IRIG 220 (724)
...|+++|+++=+|
T Consensus 284 a~~A~~~gi~~~~~ 297 (388)
T 3qld_A 284 LDVAGEAGMAAWVG 297 (388)
T ss_dssp HHHHHHTTCEEEEC
T ss_pred HHHHHHCCCeEEec
Confidence 99999999998544
No 159
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=56.71 E-value=1.1e+02 Score=32.04 Aligned_cols=126 Identities=19% Similarity=0.280 Sum_probs=77.5
Q ss_pred EEEe-eeecCCCCC-eEEeeccCCCCCCHHHHHHHHHHHHH---------------------------------HHHHHH
Q 004907 91 VMVG-NVAIGSEHP-IRVQTMTTNDTKDVAGTVEEVMRIAD---------------------------------ACFEIK 135 (724)
Q Consensus 91 V~VG-~V~IGG~~P-I~VQSMt~t~T~Dv~atv~Qi~~L~~---------------------------------a~~~I~ 135 (724)
|.|. ++.+|++.| ++|-=.+.-. |.++.++-..+|.+ +|+.++
T Consensus 7 ~~~~~~~~~G~~~~~~viaGPCsie--~~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~L~ 84 (285)
T 3sz8_A 7 VAISPGVTAGNSLPFVLFGGINVLE--SLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFA 84 (285)
T ss_dssp EEEETTEEEETTSCCEEEEEEEECC--CHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHH
T ss_pred eccCCCceECCCCceEEEEeCCcCC--CHHHHHHHHHHHHHHHHhheeeeEEEeecccCCCCCCCCcCCcCHHHHHHHHH
Confidence 6666 899999865 5665555544 34444433333332 455555
Q ss_pred HHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC
Q 004907 136 NSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 215 (724)
Q Consensus 136 ~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 215 (724)
+ .++...+|++.++|--..+. ...+.+|-+-|=-+|+-+ .++++++-..|+
T Consensus 85 ~--~~~e~Glp~~Tev~d~~~v~-~l~~~vd~lqIgA~~~~n--------------------------~~LLr~va~~gk 135 (285)
T 3sz8_A 85 E--VKARFGVPVITDVHEAEQAA-PVAEIADVLQVPAFLARQ--------------------------TDLVVAIAKAGK 135 (285)
T ss_dssp H--HHHHHCCCEEEECCSGGGHH-HHHTTCSEEEECGGGTTC--------------------------HHHHHHHHHTSS
T ss_pred H--HHHhcCCeEEEEeCCHHHHH-HHHHhCCEEEECccccCC--------------------------HHHHHHHHccCC
Confidence 5 34567799999998765554 345668888888877743 236677778899
Q ss_pred cEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 216 AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 216 ~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~divi 262 (724)
|| ++--|-- -|++.|. .-++.+.+.|=++|++
T Consensus 136 PV--ilK~G~~---------~t~~ei~----~ave~i~~~Gn~~i~L 167 (285)
T 3sz8_A 136 PV--NVKKPQF---------MSPTQLK----HVVSKCGEVGNDRVML 167 (285)
T ss_dssp CE--EEECCTT---------SCGGGTH----HHHHHHHHTTCCCEEE
T ss_pred cE--EEeCCCC---------CCHHHHH----HHHHHHHHcCCCcEEE
Confidence 98 4433310 2555552 2344556777777776
No 160
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=55.62 E-value=5.9 Score=41.10 Aligned_cols=127 Identities=15% Similarity=0.226 Sum_probs=80.8
Q ss_pred cCCCCCeEEeecc--CCCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhc--------CCC-ccee-----
Q 004907 98 IGSEHPIRVQTMT--TNDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQK--------NYN-IPLV----- 148 (724)
Q Consensus 98 IGG~~PI~VQSMt--~t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~--------~~~-iPLV----- 148 (724)
|||+. +.|.+|. +.|..+.+.|-.++.+|.+ -+..+.+.+... +.. +|+-
T Consensus 55 I~Gd~-v~V~~lv~~g~dPH~yeptp~d~~~l~~ADlvv~~G~~lE~w~~~~~~~~~~~~~~v~~s~~i~~~~~~~~~~~ 133 (313)
T 1toa_A 55 IAQGD-VHLKGLMGPGVDPHLYTATAGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRLVVAVSETIPVSQRLSLEEA 133 (313)
T ss_dssp HHGGG-SEEEESCCTTCCTTTCCCCHHHHHHHHHCSEEEECCTTCSTTCHHHHHHHTTSSEEEEGGGGSCGGGSCBSTTS
T ss_pred HcCCc-eEEEEccCCCCCcccCCCCHHHHHHHHcCCEEEEcCCCcHHHHHHHHHhccCCCeEEEeecCcccccccccCCC
Confidence 56665 8899995 4678999999999999999 233343332111 111 1111
Q ss_pred -ecCC--CCHHHHHHHhhh-cCcc-ccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 149 -ADIH--FAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 149 -ADIH--F~~~lAl~a~~~-vdki-RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
.|=| +||..|...++. .+.+ .+.|.|=..=+++ -+.|.++|+.+++.++..+..+++.++++ =|.|
T Consensus 134 ~~DPHvWldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~N-------~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~--v~~H 204 (313)
T 1toa_A 134 EFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQR-------YQAYQQQLDKLDAYVRRKAQSLPAERRVL--VTAH 204 (313)
T ss_dssp CBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHH-------HHHHHHHHHHHHHHHHHHHHTSCGGGCEE--EEEE
T ss_pred CCCCceeCCHHHHHHHHHHHHHHHHHHChhhHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhCCccCCEE--EEEC
Confidence 1333 567777766665 3332 4888774221111 45699999999999999888877655554 6677
Q ss_pred CCCchHHHhhcC
Q 004907 224 GSLSDRIMSYYG 235 (724)
Q Consensus 224 GSL~~~il~~yg 235 (724)
.++ ..+.++||
T Consensus 205 ~af-~Yfa~~yG 215 (313)
T 1toa_A 205 DAF-GYFSRAYG 215 (313)
T ss_dssp SCC-HHHHHHHT
T ss_pred CcH-HHHHHHCC
Confidence 776 45666676
No 161
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha proteobacterium BAL199}
Probab=55.49 E-value=11 Score=40.17 Aligned_cols=90 Identities=12% Similarity=0.234 Sum_probs=62.0
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCC-CCHHHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIH-FAPSVALR 160 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIH-F~~~lAl~ 160 (724)
+|.+.+++|= .|. .-+.+.+++-+++|++ .+..+++ .+++||.+|=. +++.-+..
T Consensus 216 ~G~~~~l~vD--aN~-~~~~~~A~~~~~~l~~~~i~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~ 287 (390)
T 3ugv_A 216 VGRDTALMVD--FNQ-GLDMAEAMHRTRQIDDLGLEWIEEPVVYDNFDGYAQLRH-----DLKTPLMIGENFYGPREMHQ 287 (390)
T ss_dssp HCTTSEEEEE--CTT-CCCHHHHHHHHHHHTTSCCSEEECCSCTTCHHHHHHHHH-----HCSSCEEECTTCCSHHHHHH
T ss_pred hCCCCEEEEE--CCC-CCCHHHHHHHHHHHHhhCCCEEECCCCcccHHHHHHHHH-----hcCCCEEeCCCcCCHHHHHH
Confidence 4666677663 221 2245555555566655 4445554 58899999965 44666666
Q ss_pred Hhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 161 VAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 161 a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+++ ++|-|.|.|...|.-. ...++...|+++|+++
T Consensus 288 ~i~~~a~d~v~ik~~~~GGit----------------------~~~~i~~~A~~~gi~~ 324 (390)
T 3ugv_A 288 ALQAGACDLVMPDFMRIGGVS----------------------GWMRAAGVAGAWGIPM 324 (390)
T ss_dssp HHHTTCCSEECCBHHHHTHHH----------------------HHHHHHHHHHHHTCCB
T ss_pred HHHcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCEE
Confidence 765 3999999999998743 3577999999999987
No 162
>3u9i_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, PSI-biology; 2.90A {Roseiflexus SP}
Probab=55.09 E-value=15 Score=39.24 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=44.3
Q ss_pred CCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 142 NYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 142 ~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
.+++||.+|=+. +..-+..+++ ++|-|.|.|.. |.-. ...++...|+++|+++=
T Consensus 268 ~~~iPIa~dE~~~~~~~~~~~i~~~a~d~i~~k~~~-GGit----------------------~~~~ia~~A~~~gi~~~ 324 (393)
T 3u9i_A 268 TRRVPVAADESVASATDAARLARNAAVDVLNIKLMK-CGIV----------------------EALDIAAIARTAGLHLM 324 (393)
T ss_dssp TCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHH-HCHH----------------------HHHHHHHHHHHHTCEEE
T ss_pred hCCCcEEeCCcCCCHHHHHHHHHcCCCCEEEecccc-cCHH----------------------HHHHHHHHHHHcCCeEE
Confidence 588999999664 4444445555 49999999999 8744 35779999999999997
Q ss_pred Eeec
Q 004907 219 IGTN 222 (724)
Q Consensus 219 IGvN 222 (724)
+|..
T Consensus 325 ~~~~ 328 (393)
T 3u9i_A 325 IGGM 328 (393)
T ss_dssp ECCS
T ss_pred ecCC
Confidence 7653
No 163
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=54.93 E-value=24 Score=34.37 Aligned_cols=19 Identities=0% Similarity=0.074 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhcCCCccee
Q 004907 130 ACFEIKNSLVQKNYNIPLV 148 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLV 148 (724)
.++++++.|.+.+..+..+
T Consensus 52 ~~~~~~~~l~~~gl~~~~~ 70 (290)
T 3tva_A 52 HAQAFRAKCDAAGIQVTVI 70 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCCEEEEE
Confidence 3556666666677766554
No 164
>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*
Probab=54.90 E-value=1.3e+02 Score=29.76 Aligned_cols=213 Identities=9% Similarity=-0.018 Sum_probs=0.0
Q ss_pred CeEEeeccCCC---CCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceee----cCCCC-----
Q 004907 103 PIRVQTMTTND---TKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVA----DIHFA----- 154 (724)
Q Consensus 103 PI~VQSMt~t~---T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVA----DIHF~----- 154 (724)
.+.+++++-.+ ..+++. ++.+.++-= .++++++.|.+.+..+...+ ++.|.
T Consensus 22 klg~~~~~~~~~~~~~~l~~-l~~~~~~G~~~vEl~~~~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~l~~~d~~ 100 (309)
T 2hk0_A 22 KHGIYYSYWEHEWSAKFGPY-IEKVAKLGFDIIEVAAHHINEYSDAELATIRKSAKDNGIILTAGIGPSKTKNLSSEDAA 100 (309)
T ss_dssp EEEEEGGGGCSCTTSCSHHH-HHHHHHTTCSEEEEEHHHHTTSCHHHHHHHHHHHHHTTCEEEEECCCCSSSCSSCSCHH
T ss_pred eeEEehhhcccccccccHHH-HHHHHHhCCCEEEeccCCccccchhhHHHHHHHHHHcCCeEEEecCCCCCCCCCCCCHH
Q ss_pred --------HHHHHHHhhh--cCccccCC----CCCcchh-hhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 155 --------PSVALRVAEC--FDKIRVNP----GNFADRR-AQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 155 --------~~lAl~a~~~--vdkiRINP----GNig~~~-k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
.+-+++.+.. +..|++.+ |.+-... .. .+.++++.+.++++.+.|+++|+.+
T Consensus 101 ~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~~~~~~~~~-----------~~~~~~~~~~l~~l~~~a~~~gv~l-- 167 (309)
T 2hk0_A 101 VRAAGKAFFERTLSNVAKLDIHTIGGALHSYWPIDYSQPVDK-----------AGDYARGVEGINGIADFANDLGINL-- 167 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEECTTSCSSCCTTSCCCH-----------HHHHHHHHHHHHHHHHHHHHTTCEE--
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEeeccccccccCCCcCCh-----------HHHHHHHHHHHHHHHHHHHHcCCEE--
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhH----HHHHHHHHHHHhhcCCCCcccccc
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVV----MVQAYRLLVAEMYVHGWDYPLHLG 295 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~----~v~Ayrlla~~m~~~g~dYPLHLG 295 (724)
.++-.+..+-.++.+.-+..+++++.|-.++.+-+=..+... ..++.+.+..+ ..+ +|+-
T Consensus 168 ----------~lEn~~~~~~~~~~~~~~~~~l~~~v~~~~vg~~~D~~H~~~~g~d~~~~l~~~~~~-----i~~-vHl~ 231 (309)
T 2hk0_A 168 ----------CIEVLNRFENHVLNTAAEGVAFVKDVGKNNVKVMLDTFHMNIEEDSFGDAIRTAGPL-----LGH-FHTG 231 (309)
T ss_dssp ----------EEECCCTTTCSSCCSHHHHHHHHHHHTCTTEEEEEEHHHHHHHCSCHHHHHHHHGGG-----EEE-EEEC
T ss_pred ----------EEeecccccccccCCHHHHHHHHHHcCCCCeEEEEehhhHhhcCcCHHHHHHHHHhh-----EEE-EEeC
Q ss_pred ccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCCC-----------------------CcccchHHHHHHH
Q 004907 296 VTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEP-----------------------PEKEIDPCRRLAN 345 (724)
Q Consensus 296 VTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~d-----------------------P~~EV~v~~~Ll~ 345 (724)
=..-...-+|.|-=.-=+..|-..|---+|-+-.... |.+.++-+.+-++
T Consensus 232 D~~r~~~G~G~id~~~~~~~L~~~gy~g~i~lE~~~~~~~~~~~~i~~~r~~~~~~~~~~~~~~~~~s~~~l~ 304 (309)
T 2hk0_A 232 ESNRRVPGKGRMPWHEIGLALRDINYTGAVIMEPFVKTGGTIGSDIKVWRDLSGGADIAKMDEDARNALAFSR 304 (309)
T ss_dssp CTTSCCTTSSCCCHHHHHHHHHHTTCCSEEEECCCCCCSHHHHHHTTCCSCCSCSCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCccCHHHHHHHHHHcCCCCcEEEEecCCccchhcchhhhhccccCCCCcccHHHHHHHHHHHHH
No 165
>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8
Probab=54.44 E-value=52 Score=33.98 Aligned_cols=123 Identities=17% Similarity=0.248 Sum_probs=77.7
Q ss_pred CCC-cceeecCCC----CHHHHHHHh----hh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHH
Q 004907 142 NYN-IPLVADIHF----APSVALRVA----EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK 211 (724)
Q Consensus 142 ~~~-iPLVADIHF----~~~lAl~a~----~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ak 211 (724)
+.+ .|||||.-| ++.-|++.+ +. ++.|-|-=| . .+.+.|+++.
T Consensus 75 ~~~~~~vvaD~pfgsy~~~~~a~~~a~rl~kaGa~aVklEgg-----~----------------------e~~~~I~al~ 127 (264)
T 1m3u_A 75 GAPNCLLLADLPFMAYATPEQAFENAATVMRAGANMVKIEGG-----E----------------------WLVETVQMLT 127 (264)
T ss_dssp HCTTSEEEEECCTTSSSSHHHHHHHHHHHHHTTCSEEECCCS-----G----------------------GGHHHHHHHH
T ss_pred hCCCCcEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEECCc-----H----------------------HHHHHHHHHH
Confidence 455 578999999 455555322 22 555544433 1 2455677788
Q ss_pred hcCCcE--EEeeccCCCchHHHhhc---CCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcC
Q 004907 212 KYGRAV--RIGTNHGSLSDRIMSYY---GDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVH 286 (724)
Q Consensus 212 e~g~~I--RIGvN~GSL~~~il~~y---g~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~ 286 (724)
+.|+|+ .||.+-=|.... .-| |.| ++-.+.+++-++.+++.|=+-|++-+-.+ +..+.++++
T Consensus 128 ~agipV~gHiGLtPq~v~~~--ggf~v~grt-~~~a~~~i~rA~a~~eAGA~~ivlE~vp~------~~a~~it~~---- 194 (264)
T 1m3u_A 128 ERAVPVCGHLGLTPQSVNIF--GGYKVQGRG-DEAGDQLLSDALALEAAGAQLLVLECVPV------ELAKRITEA---- 194 (264)
T ss_dssp HTTCCEEEEEESCGGGHHHH--TSSCCCCCS-HHHHHHHHHHHHHHHHHTCCEEEEESCCH------HHHHHHHHH----
T ss_pred HCCCCeEeeecCCceeeccc--CCeEEEeCC-HHHHHHHHHHHHHHHHCCCcEEEEecCCH------HHHHHHHHh----
Confidence 899997 578654333211 112 223 44569999999999999999999988321 345678888
Q ss_pred CCCccccccccccCCCCCCch
Q 004907 287 GWDYPLHLGVTEAGEGEDGRM 307 (724)
Q Consensus 287 g~dYPLHLGVTEAG~~~~G~I 307 (724)
++-|+ +|+ =||..-||-|
T Consensus 195 -l~iP~-igI-Gag~~~dgQv 212 (264)
T 1m3u_A 195 -LAIPV-IGI-GAGNVTDGQI 212 (264)
T ss_dssp -CSSCE-EEE-SSCTTSSEEE
T ss_pred -CCCCE-EEe-CCCCCCCcce
Confidence 67774 332 3666666653
No 166
>1wuf_A Hypothetical protein LIN2664; structural genomics, unknown function, nysgxrc target T2186, superfamily, protein structure initiative, PSI; 2.90A {Listeria innocua} SCOP: c.1.11.2 d.54.1.1
Probab=54.20 E-value=18 Score=38.24 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=45.1
Q ss_pred cCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 141 KNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 141 ~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.+++||++|=.+ +..-+..+++ ++|-|.|.|..+|.-. ...+++..|+++|+++
T Consensus 249 ~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~v~ik~~~~GGit----------------------~~~~ia~~A~~~gi~~ 306 (393)
T 1wuf_A 249 KQLKTRICLDENIRSVKDVEQAHSIGSCRAINLKLARVGGMS----------------------SALKIAEYCALNEILV 306 (393)
T ss_dssp TTCSSEEEECTTCCSHHHHHHHHHHTCCSEEEECTGGGTSHH----------------------HHHHHHHHHHHTTCEE
T ss_pred HhCCCCEEECCCcCCHHHHHHHHHhCCCCEEEeChhhhCCHH----------------------HHHHHHHHHHHcCCeE
Confidence 3588999999765 5555556665 3999999999998844 3577999999999998
Q ss_pred EEe
Q 004907 218 RIG 220 (724)
Q Consensus 218 RIG 220 (724)
=+|
T Consensus 307 ~~~ 309 (393)
T 1wuf_A 307 WCG 309 (393)
T ss_dssp EEC
T ss_pred Eec
Confidence 544
No 167
>3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A*
Probab=54.19 E-value=48 Score=31.02 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCcEEEeeccCCC--chHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 004907 203 FSPLVEKCKKYGRAVRIGTNHGSL--SDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 270 (724)
Q Consensus 203 ~~~vv~~ake~g~~IRIGvN~GSL--~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 270 (724)
+.++++.++++|+.+.|-+| |++ .++.+ +.+.+. .+.|.||+++.|..
T Consensus 87 l~~l~~~~~~~~~~i~i~Tn-g~~~~~~~~~------------------~~l~~~-~~~v~isld~~~~~ 136 (245)
T 3c8f_A 87 VRDWFRACKKEGIHTCLDTN-GFVRRYDPVI------------------DELLEV-TDLVMLDLKQMNDE 136 (245)
T ss_dssp HHHHHHHHHTTTCCEEEEEC-CCCCCCCHHH------------------HHHHHT-CSEEEEECCCSSHH
T ss_pred HHHHHHHHHHcCCcEEEEeC-CCcCcCHHHH------------------HHHHHh-CCEEEEeCCCCCHH
Confidence 57899999999999999998 676 33221 112223 56799999998754
No 168
>3fv9_G Mandelate racemase/muconate lactonizing enzyme; structural genomics, mandelate racemase/muconatelactonizing hydrolase, PSI-2; 1.90A {Roseovarius nubinhibens ism} PDB: 2pce_A
Probab=54.10 E-value=15 Score=38.88 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=49.9
Q ss_pred hhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC
Q 004907 139 VQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 215 (724)
Q Consensus 139 ~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 215 (724)
+++.+++||.+|=.+ +..-+..+++ ++|-|.|.|+..|.-. ...++...|+++|+
T Consensus 238 l~~~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~~k~~~~GGit----------------------~~~~i~~~A~~~gi 295 (386)
T 3fv9_G 238 LRARCALPLLLDELIQTETDLIAAIRDDLCDGVGLKVSKQGGIT----------------------PMLRQRAIAAAAGM 295 (386)
T ss_dssp HHTTCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHH----------------------HHHHHHHHHHHTTC
T ss_pred HHhhCCCCEEeCCCcCCHHHHHHHHHhCCCCEEEECccccCCHH----------------------HHHHHHHHHHHcCC
Confidence 345689999999664 4555556665 4999999999998744 35779999999999
Q ss_pred cEEEeeccCC
Q 004907 216 AVRIGTNHGS 225 (724)
Q Consensus 216 ~IRIGvN~GS 225 (724)
++=+|-+.+|
T Consensus 296 ~~~~~~~~es 305 (386)
T 3fv9_G 296 VMSVQDTVGS 305 (386)
T ss_dssp EEEEECSSCC
T ss_pred EEEeCCCCCC
Confidence 9988866543
No 169
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=52.78 E-value=20 Score=38.40 Aligned_cols=58 Identities=5% Similarity=-0.067 Sum_probs=46.1
Q ss_pred CCCcceeecCC-CCHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 142 NYNIPLVADIH-FAPSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 142 ~~~iPLVADIH-F~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
.+++|+.+|=. +++.-+..+++. +|-|.|.|...|.-. ...++...|+++|+++=
T Consensus 263 ~~~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~ 320 (410)
T 3dip_A 263 QTRAPICGGENLAGTRRFHEMLCADAIDFVMLDLTWCGGLS----------------------EGRKIAALAETHARPLA 320 (410)
T ss_dssp HHCCCEEECTTCCSHHHHHHHHHTTCCSEEEECTTTSSCHH----------------------HHHHHHHHHHHTTCCEE
T ss_pred hCCCCEEecCCcCCHHHHHHHHHcCCCCeEeecccccCCHH----------------------HHHHHHHHHHHcCCEEe
Confidence 57899999955 456677777663 999999999998843 35779999999999986
Q ss_pred Eee
Q 004907 219 IGT 221 (724)
Q Consensus 219 IGv 221 (724)
++.
T Consensus 321 ~h~ 323 (410)
T 3dip_A 321 PHX 323 (410)
T ss_dssp ECS
T ss_pred eeC
Confidence 554
No 170
>1v77_A PH1877P, hypothetical protein PH1877; RNAse P protein, TIM-barrel, RNA binding protein; 1.80A {Pyrococcus horikoshii} SCOP: c.6.3.2 PDB: 2czv_A*
Probab=52.44 E-value=11 Score=36.91 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCcEEEeeccCCCc-hHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHH
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLS-DRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~-~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~ 282 (724)
+++++|+++|+++ -+|.+|+- +..- .-.+..+.+.+.+++|.+.|+ .|+||==|..+... ..++...+.
T Consensus 115 ~~a~~A~e~gv~l--EIn~s~~~~~~~~-----~R~~~~~~~~~il~l~k~~g~-~ivisSDAh~~~~v-~~~~~~~~l 184 (212)
T 1v77_A 115 VLAKLMVKKNVAL--GFSLRPLLYSNPY-----ERANLLRFMMKAWKLVEKYKV-RRFLTSSAQEKWDV-RYPRDLISL 184 (212)
T ss_dssp HHHHHHHHHTCEE--EEESHHHHHSCHH-----HHHHHHHHHHHHHHHHHHHTC-CEEEECCCSSGGGC-CCHHHHHHH
T ss_pred HHHHHHHHCCeEE--EEECcHHhcCCcc-----hHHHHHHHHHHHHHHHHhcCC-CEEEeCCCCChhhc-CCHHHHHHH
Confidence 6899999999988 77777741 1111 224778899999999999998 89999888877765 444443333
No 171
>4e8g_A Enolase, mandelate racemase/muconate lactonizing enzyme, N domain protein; putative racemase, nysgrc, structural genomics, PSI-biology; 2.00A {Paracoccus denitrificans}
Probab=52.08 E-value=17 Score=38.64 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=50.2
Q ss_pred hhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC
Q 004907 139 VQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 215 (724)
Q Consensus 139 ~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 215 (724)
+++.+++||.+|=.+ +..-+..+++ ++|-|.|.|...|.-. ...++...|+++|+
T Consensus 253 l~~~~~iPIa~dE~~~~~~~~~~~~~~~a~d~v~ik~~~~GGit----------------------~~~~ia~~A~~~gi 310 (391)
T 4e8g_A 253 IRGRVQHGIYLDESGEDLSTVIRAAGQGLCDGFGMKLTRIGGLQ----------------------QMAAFRDICEARAL 310 (391)
T ss_dssp HGGGCCSCEEESTTCCSHHHHHHHHHTTCCSEEEEEHHHHTSHH----------------------HHHHHHHHHHHTTC
T ss_pred HHhhCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCC
Confidence 345689999999664 4555556665 4999999999998743 35779999999999
Q ss_pred cEEEeeccCC
Q 004907 216 AVRIGTNHGS 225 (724)
Q Consensus 216 ~IRIGvN~GS 225 (724)
++=+|.+.+|
T Consensus 311 ~~~~~~~~es 320 (391)
T 4e8g_A 311 PHSCDDAWGG 320 (391)
T ss_dssp CEEEECSSCS
T ss_pred eEEeCCcCCC
Confidence 9988866554
No 172
>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}
Probab=52.03 E-value=50 Score=33.21 Aligned_cols=101 Identities=18% Similarity=0.251 Sum_probs=67.9
Q ss_pred HHhhhcCCCcceeecCCCC--HHHH----HHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHH
Q 004907 136 NSLVQKNYNIPLVADIHFA--PSVA----LRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVE 208 (724)
Q Consensus 136 ~~L~~~~~~iPLVADIHF~--~~lA----l~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~ 208 (724)
+.|.++ ..++++|.||. ++-. ..++++ +|-+=++| +++.+ .+++.++
T Consensus 53 ~~L~~~--g~~iflDlK~~DI~nTv~~~~~~~~~~gad~vTvh~--~~G~~----------------------~~~~a~~ 106 (239)
T 3tr2_A 53 EELMQK--GYRIFLDLKFYDIPQTVAGACRAVAELGVWMMNIHI--SGGRT----------------------MMETVVN 106 (239)
T ss_dssp HHHHHT--TCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEG--GGCHH----------------------HHHHHHH
T ss_pred HHHHhc--CCCEEEEecccccchHHHHHHHHHHhCCCCEEEEec--cCCHH----------------------HHHHHHH
Confidence 334443 57999999994 4432 234445 77777777 33322 4777888
Q ss_pred HHHhcC---CcEEEee-ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE
Q 004907 209 KCKKYG---RAVRIGT-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS 263 (724)
Q Consensus 209 ~ake~g---~~IRIGv-N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS 263 (724)
.+++++ .|.=+|| -.-|.+..-++..|-+ ..+-+.+++.++...+.|.+=+|.|
T Consensus 107 ~~~~~~~~~~~~l~~Vt~LTS~~~~~l~~~g~~-~~~~~~v~~~A~~a~~~g~~GvV~s 164 (239)
T 3tr2_A 107 ALQSITLKEKPLLIGVTILTSLDGSDLKTLGIQ-EKVPDIVCRMATLAKSAGLDGVVCS 164 (239)
T ss_dssp HHHTCCCSSCCEEEEECSCTTCCHHHHHHTTCC-SCHHHHHHHHHHHHHHHTCCEEECC
T ss_pred HHHhcCcCCCceEEEEEEEeeCCHHHHHhcCCC-CCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 888764 4555675 5678887655555522 4567888899999999998888866
No 173
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=52.02 E-value=49 Score=31.20 Aligned_cols=82 Identities=15% Similarity=0.152 Sum_probs=52.8
Q ss_pred CCCCCHHHHHHHHHHHHH---------------HHHHHHHHhhhcCCCcceeecCCCC--HHH-HHHHhhh-cCccccCC
Q 004907 112 NDTKDVAGTVEEVMRIAD---------------ACFEIKNSLVQKNYNIPLVADIHFA--PSV-ALRVAEC-FDKIRVNP 172 (724)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~---------------a~~~I~~~L~~~~~~iPLVADIHF~--~~l-Al~a~~~-vdkiRINP 172 (724)
-|..|.+.+++.+.++.. +.+.| +++++...++|+.+|.++. ++. +..|+++ +|-|=+ |
T Consensus 7 ~D~~~~~~~~~~~~~~~~~~diie~G~p~~~~~g~~~i-~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v-~ 84 (211)
T 3f4w_A 7 LDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAI-KAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTV-L 84 (211)
T ss_dssp ECSCCHHHHHHHHHHHGGGCSEEEECHHHHHHHTTHHH-HHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEE-E
T ss_pred eCCCCHHHHHHHHHHhhcCccEEEeCcHHHHhccHHHH-HHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEE-e
Confidence 356677888888877754 12223 3334444579999998775 444 6777777 888877 2
Q ss_pred CCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 173 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 173 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
+--+ ++.+.++++.|+++|+.+=
T Consensus 85 ~~~~-----------------------~~~~~~~~~~~~~~g~~~~ 107 (211)
T 3f4w_A 85 GVTD-----------------------VLTIQSCIRAAKEAGKQVV 107 (211)
T ss_dssp TTSC-----------------------HHHHHHHHHHHHHHTCEEE
T ss_pred CCCC-----------------------hhHHHHHHHHHHHcCCeEE
Confidence 2221 1246779999999987653
No 174
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=50.90 E-value=80 Score=30.36 Aligned_cols=101 Identities=8% Similarity=0.040 Sum_probs=59.5
Q ss_pred CCCCCeEEeeccCCCCCCHH--HHHHHHHHHHH---------HHHHHHHHhhhcCCCcceee-------cCCC----CHH
Q 004907 99 GSEHPIRVQTMTTNDTKDVA--GTVEEVMRIAD---------ACFEIKNSLVQKNYNIPLVA-------DIHF----APS 156 (724)
Q Consensus 99 GG~~PI~VQSMt~t~T~Dv~--atv~Qi~~L~~---------a~~~I~~~L~~~~~~iPLVA-------DIHF----~~~ 156 (724)
-++-++++|.-...+....+ ...+.+.++.+ ....|+. +++.+++|++. |.|+ ...
T Consensus 15 ~~~~~~~~~~~~~~p~~~~~~~~~~~~a~~~~~~G~~~i~~~~~~~i~~--i~~~~~~p~i~~~~~~~~~~~~~i~~~~~ 92 (234)
T 1yxy_A 15 KGGIIVSCQALPGEPLYSETGGIMPLMAKAAQEAGAVGIRANSVRDIKE--IQAITDLPIIGIIKKDYPPQEPFITATMT 92 (234)
T ss_dssp TTSCEEECCCCTTSTTCCTTCCSHHHHHHHHHHHTCSEEEEESHHHHHH--HHTTCCSCEEEECBCCCTTSCCCBSCSHH
T ss_pred hCCEEEEeeCCCCCCCcCCccchHHHHHHHHHHCCCcEeecCCHHHHHH--HHHhCCCCEEeeEcCCCCccccccCChHH
Confidence 46778888887777666555 55555666655 2334433 34457899974 6676 235
Q ss_pred HHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhc--CCcEEEeecc
Q 004907 157 VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY--GRAVRIGTNH 223 (724)
Q Consensus 157 lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~--g~~IRIGvN~ 223 (724)
.+..++++ +|.|=+.-....+.. .+.+.++++.+++. +.+ |+++.
T Consensus 93 ~i~~~~~~Gad~V~l~~~~~~~~~--------------------~~~~~~~i~~i~~~~~~~~--v~~~~ 140 (234)
T 1yxy_A 93 EVDQLAALNIAVIAMDCTKRDRHD--------------------GLDIASFIRQVKEKYPNQL--LMADI 140 (234)
T ss_dssp HHHHHHTTTCSEEEEECCSSCCTT--------------------CCCHHHHHHHHHHHCTTCE--EEEEC
T ss_pred HHHHHHHcCCCEEEEcccccCCCC--------------------CccHHHHHHHHHHhCCCCe--EEEeC
Confidence 66677776 887754433322110 01245688888887 555 56543
No 175
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=50.85 E-value=31 Score=34.56 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=61.6
Q ss_pred CCCeEEeeccCCCC---CCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCCH------
Q 004907 101 EHPIRVQTMTTNDT---KDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFAP------ 155 (724)
Q Consensus 101 ~~PI~VQSMt~t~T---~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~~------ 155 (724)
..++.||+.|-.+. .|++.+++.+.++-= ..+++++.|.+.|..++.+ |+.+
T Consensus 12 ~~~~g~~~~s~~~~~~~~~~~~~l~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~l~~~GL~v~~~---~~~~~~~~~~ 88 (303)
T 3l23_A 12 GKEIGLQIYSLSQELYKGDVAANLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDAGLKIISS---HVNPVDTSIS 88 (303)
T ss_dssp CCCCEEEGGGGGGGGGSSCHHHHHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHTTCEEEEE---ECCCBCTTCS
T ss_pred CCceEEEEEEchhhhccCCHHHHHHHHHHcCCCEEEeccccCcccCCCCHHHHHHHHHHcCCeEEEE---eccccccccc
Confidence 46788898877664 267766665554421 2678888877777666543 3221
Q ss_pred ----------------------HHHHHHhh-h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHH
Q 004907 156 ----------------------SVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK 211 (724)
Q Consensus 156 ----------------------~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ak 211 (724)
+.+++.++ . +..|++ |+. ... . ..+.++++.+.++++.+.|+
T Consensus 89 ~p~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~-~~~--~~~-------~----~~~~~~~~~~~l~~l~~~a~ 154 (303)
T 3l23_A 89 DPFKAMIFKYSKEVTPKIMEYWKATAADHAKLGCKYLIQ-PMM--PTI-------T----THDEAKLVCDIFNQASDVIK 154 (303)
T ss_dssp STTTTBCCSCCTTTHHHHHHHHHHHHHHHHHTTCSEEEE-CSC--CCC-------C----SHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEE-CCC--CCC-------C----CHHHHHHHHHHHHHHHHHHH
Confidence 22233333 3 788888 331 100 1 23456788888999999999
Q ss_pred hcCCc
Q 004907 212 KYGRA 216 (724)
Q Consensus 212 e~g~~ 216 (724)
++|+.
T Consensus 155 ~~Gv~ 159 (303)
T 3l23_A 155 AEGIA 159 (303)
T ss_dssp HTTCT
T ss_pred HCCCc
Confidence 99986
No 176
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=50.54 E-value=8.1 Score=40.26 Aligned_cols=127 Identities=17% Similarity=0.269 Sum_probs=77.8
Q ss_pred cCCCCCeEEeeccC--CCCCCHHHHHHHHHHHHH-------------HHHHHHHHhh-----hcCCCccee---------
Q 004907 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIAD-------------ACFEIKNSLV-----QKNYNIPLV--------- 148 (724)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~-----~~~~~iPLV--------- 148 (724)
|||+. +.|.+|.. .|..+.+.+-.++.+|.+ -+..+.+.+- ...-.+.+.
T Consensus 62 I~Gd~-v~V~~lvp~g~dPH~yeptp~d~~~l~~ADlvv~nG~~lE~wl~k~~~~~~~~~~v~~s~gi~~~~~~~~~~~~ 140 (321)
T 1xvl_A 62 VAGDK-LVVESITRIGAEIHGYEPTPSDIVKAQDADLILYNGMNLERWFEQFLGNVKDVPSVVLTEGIEPIPIADGPYTD 140 (321)
T ss_dssp HHTTT-SEEEESSCSSCCCSSCCCCHHHHHHHHTCSEEEECCTTSSTTHHHHHHTSSSCCEEETTTTCCCCBCCSSSSTT
T ss_pred HhCCc-eEEEEecCCCCCcccccCCHHHHHHHhcCCEEEECCCChHHHHHHHHHhcCCCcEEEccCCcccccccccCCCC
Confidence 67776 89999964 678999999999999999 2344433221 000012222
Q ss_pred -ecCC--CCHHHHHHHhhh-cCc-cccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 149 -ADIH--FAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 149 -ADIH--F~~~lAl~a~~~-vdk-iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
.|=| +||..+...++. .+. ..+.|.|=..=+++ -+.|.++|+.+++.++..+..++..+.++ =|.|
T Consensus 141 ~~DPHvWldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~N-------a~~~~~~L~~Ld~~~~~~l~~~~~~~r~~--v~~H 211 (321)
T 1xvl_A 141 KPNPHAWMSPRNALVYVENIRQAFVELDPDNAKYYNAN-------AAVYSEQLKAIDRQLGADLEQVPANQRFL--VSCE 211 (321)
T ss_dssp SBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHH-------HHHHHHHHHHHHHHHHHHHTTSCGGGCEE--EEEE
T ss_pred CCCCCcCCCHHHHHHHHHHHHHHHHHHCcccHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhCcccCCEE--EEEC
Confidence 1222 456666666664 333 24788764221111 35699999999998888877665545544 5667
Q ss_pred CCCchHHHhhcC
Q 004907 224 GSLSDRIMSYYG 235 (724)
Q Consensus 224 GSL~~~il~~yg 235 (724)
.++ ..+.++||
T Consensus 212 ~af-~Yfa~~yG 222 (321)
T 1xvl_A 212 GAF-SYLARDYG 222 (321)
T ss_dssp STT-HHHHHHTT
T ss_pred chH-HHHHHHCC
Confidence 776 44555555
No 177
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Probab=50.47 E-value=32 Score=36.53 Aligned_cols=97 Identities=21% Similarity=0.253 Sum_probs=65.0
Q ss_pred HhhhhhhhHHHHHHHHHhcCC-cEEEeeccCCCchHHH--------hhcCCCchHHHHHHHHHHHHHHH-CCCCcEEEEE
Q 004907 195 ELQHIEEVFSPLVEKCKKYGR-AVRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRK-LDFHNFLFSM 264 (724)
Q Consensus 195 ele~I~e~~~~vv~~ake~g~-~IRIGvN~GSL~~~il--------~~yg~t~~amVeSAle~~~i~e~-~~F~diviS~ 264 (724)
|++.+.+.|..-.+.|++.|. .|-|=.-||-|=..++ .+||.+.+.=..-++|-++-+++ .|- + .|++
T Consensus 161 eI~~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~-~-~V~v 238 (376)
T 1icp_A 161 EIPQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGS-D-RVGI 238 (376)
T ss_dssp THHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCG-G-GEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcC-C-ceEE
Confidence 555666777778888888885 6777666887655544 56776665556666666665544 453 3 5677
Q ss_pred ecCC--------hhHHHHHHHHHHHHhhcCCCCccccc
Q 004907 265 KASN--------PVVMVQAYRLLVAEMYVHGWDYPLHL 294 (724)
Q Consensus 265 KaSn--------v~~~v~Ayrlla~~m~~~g~dYPLHL 294 (724)
|-|- -....+-+..|++++++.|.+| ||+
T Consensus 239 rls~~~~~~g~~~~~~~~~~~~la~~le~~Gvd~-i~v 275 (376)
T 1icp_A 239 RISPFAHYNEAGDTNPTALGLYMVESLNKYDLAY-CHV 275 (376)
T ss_dssp EECTTCCTTTCCCSCHHHHHHHHHHHHGGGCCSE-EEE
T ss_pred EeccccccCCCCCCCCHHHHHHHHHHHHHcCCCE-EEE
Confidence 7762 1235666788899999999886 555
No 178
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=48.93 E-value=15 Score=37.49 Aligned_cols=56 Identities=16% Similarity=0.319 Sum_probs=44.2
Q ss_pred cCC-CchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccccccccc
Q 004907 234 YGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEA 299 (724)
Q Consensus 234 yg~-t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEA 299 (724)
||. +++.+.+-+++.++.|++.|.+-|+|.| |... ..++..|.++ ++.|+ +||.|+
T Consensus 44 YG~ks~~~i~~~~~~~~~~L~~~g~~~IVIAC---NTa~-~~al~~lr~~-----~~iPv-igii~p 100 (269)
T 3ist_A 44 YGPRDKEEVAKFTWEMTNFLVDRGIKMLVIAC---NTAT-AAALYDIREK-----LDIPV-IGVIQP 100 (269)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHTTCSEEEECC---HHHH-HHHHHHHHHH-----CSSCE-EESHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeC---CCcc-HHHHHHHHHh-----cCCCE-EeecHH
Confidence 774 6788999999999999999999999998 6443 2357888888 78886 566553
No 179
>3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=48.58 E-value=1.6e+02 Score=26.85 Aligned_cols=89 Identities=15% Similarity=0.193 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHh
Q 004907 204 SPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEM 283 (724)
Q Consensus 204 ~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m 283 (724)
.++++.||++|+.+.|=+| |+|.++.++ .+.+. .+.|.||+|+.|.. + |+.+.
T Consensus 22 ~~l~~~~~~~g~~~~l~TN-G~l~~~~~~------------------~l~~~-~d~v~isld~~~~~-~---~~~~~--- 74 (182)
T 3can_A 22 IDILKRCGQQGIHRAVDTT-LLARKETVD------------------EVMRN-CELLLIDLKSMDST-V---HQTFC--- 74 (182)
T ss_dssp HHHHHHHHHTTCCEEEECT-TCCCHHHHH------------------HHHHT-CSEEEEECCCSCHH-H---HHHHH---
T ss_pred HHHHHHHHHCCCcEEEECC-CCCCHHHHH------------------HHHhh-CCEEEEECCCCCHH-H---HHHHh---
Confidence 6899999999998888777 567543222 12233 56799999998753 2 33221
Q ss_pred hcCCCCccccccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC---CCcccch
Q 004907 284 YVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE---PPEKEID 338 (724)
Q Consensus 284 ~~~g~dYPLHLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~---dP~~EV~ 338 (724)
|. .. -.|. -+|-.|...|+-=.||+-++. +-.+|++
T Consensus 75 ---g~-------------~~-~~i~--~~i~~l~~~g~~v~i~~~v~~~~n~n~~~~~ 113 (182)
T 3can_A 75 ---DV-------------PN-ELIL--KNIRRVAEADFPYYIRIPLIEGVNADEKNIK 113 (182)
T ss_dssp ---SS-------------CS-HHHH--HHHHHHHHTTCCEEEEEEECBTTTCSHHHHH
T ss_pred ---CC-------------CH-HHHH--HHHHHHHhCCCeEEEEEEEECCCCCCHHHHH
Confidence 10 11 2222 355667777887777777765 3345554
No 180
>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3
Probab=48.25 E-value=63 Score=31.83 Aligned_cols=95 Identities=17% Similarity=0.310 Sum_probs=60.2
Q ss_pred CcceeecCCCC--HH----HHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhc---
Q 004907 144 NIPLVADIHFA--PS----VALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY--- 213 (724)
Q Consensus 144 ~iPLVADIHF~--~~----lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~--- 213 (724)
..+++.|.||- |. .+..++++ +|-|=++|- .|. . -+.++++.++++
T Consensus 54 ~~~v~lD~kl~Dip~t~~~~~~~~~~~Gad~vtvH~~-~g~-~----------------------~l~~~~~~~~~~~~~ 109 (239)
T 1dbt_A 54 NCELFLDLKLHDIPTTVNKAMKRLASLGVDLVNVHAA-GGK-K----------------------MMQAALEGLEEGTPA 109 (239)
T ss_dssp TCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEEEGG-GCH-H----------------------HHHHHHHHHHHHSCT
T ss_pred CCcEEEEeccccchHHHHHHHHHHHhcCCCEEEEeCc-CCH-H----------------------HHHHHHHHHHhhhcc
Confidence 46888999997 44 33345555 777777762 121 1 245678888887
Q ss_pred CC--cEEEeeccC-CCchHHH-hhcC-CCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 214 GR--AVRIGTNHG-SLSDRIM-SYYG-DSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 214 g~--~IRIGvN~G-SL~~~il-~~yg-~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
|. |.=+||+-- |.+..-+ +.++ +. .+++..+...+...+.|+.-++.|.
T Consensus 110 g~~~~~~~~V~~~ts~~~~~l~~~~~~~~--~~~d~Vl~ma~~~~~~G~~g~v~~~ 163 (239)
T 1dbt_A 110 GKKRPSLIAVTQLTSTSEQIMKDELLIEK--SLIDTVVHYSKQAEESGLDGVVCSV 163 (239)
T ss_dssp TSCCCEEEEECSCTTCCHHHHHHTSCBCS--CHHHHHHHHHHHHHHTTCSEEECCG
T ss_pred CCCCccEEEEEEcCCCCHHHHHHHhccCC--CHHHHHHHHHHHHHHhCCCEEEECH
Confidence 76 545787765 6665556 6654 21 2344455556666789998877765
No 181
>1wue_A Mandelate racemase/muconate lactonizing enzyme FA protein; structural genomics, unknown function, nysgxrc target T2185; 2.10A {Enterococcus faecalis} SCOP: c.1.11.2 d.54.1.1
Probab=48.02 E-value=17 Score=38.29 Aligned_cols=58 Identities=9% Similarity=0.088 Sum_probs=44.7
Q ss_pred cCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 141 KNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 141 ~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.+++||++|=.+ +..-+..+++ +++-|.|.|..+|.-. ...++++.|+++|+++
T Consensus 249 ~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit----------------------~~~~i~~~A~~~gi~~ 306 (386)
T 1wue_A 249 RELKTRICLDENIRSLKDCQVALALGSCRSINLKIPRVGGIH----------------------EALKIAAFCQENDLLV 306 (386)
T ss_dssp TTCSSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCEE
T ss_pred HhcCCCEEeCCccCCHHHHHHHHHcCCCCEEEEchhhhCCHH----------------------HHHHHHHHHHHCCCeE
Confidence 3578999999765 4555556665 4999999999998744 2577999999999998
Q ss_pred EEe
Q 004907 218 RIG 220 (724)
Q Consensus 218 RIG 220 (724)
=+|
T Consensus 307 ~~~ 309 (386)
T 1wue_A 307 WLG 309 (386)
T ss_dssp EEC
T ss_pred EEC
Confidence 544
No 182
>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*
Probab=47.91 E-value=66 Score=32.80 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHHH---------------HHHHHHHHhhhcCCCcceeecCCCC--HHHHH----HHhhh-cCcccc
Q 004907 113 DTKDVAGTVEEVMRIAD---------------ACFEIKNSLVQKNYNIPLVADIHFA--PSVAL----RVAEC-FDKIRV 170 (724)
Q Consensus 113 ~T~Dv~atv~Qi~~L~~---------------a~~~I~~~L~~~~~~iPLVADIHF~--~~lAl----~a~~~-vdkiRI 170 (724)
|..|.+.+++-+.++.. .. .+.+.|.++ ..|+++|.+|. ++-.- .+.+. +|-+=+
T Consensus 35 D~~~~~~al~l~~~l~~~v~~~KvG~~l~~~~G~-~~v~~Lk~~--g~~VflDlK~~DIpnTv~~a~~~~~~~gaD~vTV 111 (255)
T 3ldv_A 35 DYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGP-DFVRELHKR--GFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNV 111 (255)
T ss_dssp CCSSHHHHHHHHTTSCGGGCEEEEEHHHHHHHHH-HHHHHHHHT--TCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred CCCCHHHHHHHHHHhCCcCcEEEeCHHHHHhhCH-HHHHHHHhc--CCCEEEEEecccchhHHHHHHHHHHhcCCCEEEE
Confidence 45566666665555544 22 333334443 68999999994 44322 33344 777777
Q ss_pred CCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcC--CcEEEee-ccCCCchHHHhhcCCCchHHHHHHHH
Q 004907 171 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG--RAVRIGT-NHGSLSDRIMSYYGDSPRGMVESAFE 247 (724)
Q Consensus 171 NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g--~~IRIGv-N~GSL~~~il~~yg~t~~amVeSAle 247 (724)
+| +++.+ -+++.++.++++| .|.=||| -.-|.+..-++..|- ...+-+.+++
T Consensus 112 h~--~~G~~----------------------~~~~a~~~~~~~g~~~~~li~VtvLTS~s~~~l~~~g~-~~~~~~~V~~ 166 (255)
T 3ldv_A 112 HA--SGGER----------------------MMAASREILEPYGKERPLLIGVTVLTSMESADLQGIGI-LSAPQDHVLR 166 (255)
T ss_dssp EG--GGCHH----------------------HHHHHHHHHGGGGGGSCEEEEECSCTTCCHHHHHHTTC-CSCHHHHHHH
T ss_pred ec--cCCHH----------------------HHHHHHHHHhhcCCCCceEEEEEEEecCCHHHHHhcCC-CCCHHHHHHH
Confidence 77 44322 4777888888764 4555664 467888755555442 2345677788
Q ss_pred HHHHHHHCCCCcEEEE
Q 004907 248 FARICRKLDFHNFLFS 263 (724)
Q Consensus 248 ~~~i~e~~~F~diviS 263 (724)
.++...+.|.+=+|.|
T Consensus 167 ~A~~a~~aG~~GvV~s 182 (255)
T 3ldv_A 167 LATLTKNAGLDGVVCS 182 (255)
T ss_dssp HHHHHHHTTCSEEECC
T ss_pred HHHHHHHcCCCEEEEC
Confidence 9999999999999877
No 183
>4dye_A Isomerase; enolase family protein, EFI, enzym function initiative; 1.60A {Streptomyces coelicolor} PDB: 2oqh_A
Probab=47.58 E-value=24 Score=37.71 Aligned_cols=59 Identities=14% Similarity=0.236 Sum_probs=46.2
Q ss_pred cCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 141 KNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 141 ~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.+++|+.+|=.+ +..-+..+++ ++|-|.|.|...|.-. ...++...|+++|+++
T Consensus 258 ~~~~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~ 315 (398)
T 4dye_A 258 AKVRIPLCTNMCVVRFEDFAPAMRLNAVDVIHGDVYKWGGIA----------------------ATKALAAHCETFGLGM 315 (398)
T ss_dssp HHCCSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHHTCEE
T ss_pred hhCCCCEEeCCcCCCHHHHHHHHHhCCCCEEEeCccccCCHH----------------------HHHHHHHHHHHcCCeE
Confidence 3578999999764 4555556665 4999999999998743 3577999999999999
Q ss_pred EEee
Q 004907 218 RIGT 221 (724)
Q Consensus 218 RIGv 221 (724)
=+|.
T Consensus 316 ~~h~ 319 (398)
T 4dye_A 316 NLHS 319 (398)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7764
No 184
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*
Probab=47.37 E-value=25 Score=37.23 Aligned_cols=95 Identities=11% Similarity=0.197 Sum_probs=66.3
Q ss_pred cCCCCCeE-EeeccCCCCCCHHHHHHHHHHHHH------------------HHHHHHHHhhhcCCCcceeecCCCCHHHH
Q 004907 98 IGSEHPIR-VQTMTTNDTKDVAGTVEEVMRIAD------------------ACFEIKNSLVQKNYNIPLVADIHFAPSVA 158 (724)
Q Consensus 98 IGG~~PI~-VQSMt~t~T~Dv~atv~Qi~~L~~------------------a~~~I~~~L~~~~~~iPLVADIHF~~~lA 158 (724)
+|.+.++. |= .|. .-|.+.+++-+++|++ .+..|++ .+++|+ .---+++.-+
T Consensus 183 ~g~~~~l~~vD--an~-~~~~~~A~~~~~~l~~~~i~~~~iEqP~~~~d~~~~~~l~~-----~~~iPI-dE~~~~~~~~ 253 (391)
T 3gd6_A 183 FGSRVRIKSYD--FSH-LLNWKDAHRAIKRLTKYDLGLEMIESPAPRNDFDGLYQLRL-----KTDYPI-SEHVWSFKQQ 253 (391)
T ss_dssp HGGGCEEEEEE--CTT-CSCHHHHHHHHHHHTTCCSSCCEEECCSCTTCHHHHHHHHH-----HCSSCE-EEECCCHHHH
T ss_pred cCCCCcEEEec--CCC-CcCHHHHHHHHHHHHhcCCCcceecCCCChhhHHHHHHHHH-----HcCCCc-CCCCCCHHHH
Confidence 46667777 53 222 2355666655566654 3445544 578999 5556778888
Q ss_pred HHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeecc
Q 004907 159 LRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNH 223 (724)
Q Consensus 159 l~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~ 223 (724)
..+++ ++|-|.|.|+.+|+-. ...++...|+++|+++=+|.+.
T Consensus 254 ~~~~~~~~~d~v~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~~~~~~~ 298 (391)
T 3gd6_A 254 QEMIKKDAIDIFNISPVFIGGLT----------------------SAKKAAYAAEVASKDVVLGTTQ 298 (391)
T ss_dssp HHHHHHTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCEEEECCCC
T ss_pred HHHHHcCCCCEEEECchhcCCHH----------------------HHHHHHHHHHHcCCEEEecCCC
Confidence 77776 3999999999998744 3678999999999999777544
No 185
>1muw_A Xylose isomerase; atomic resolution, disorder; 0.86A {Streptomyces olivochromogenes} SCOP: c.1.15.3 PDB: 1s5m_A* 1s5n_A* 2gyi_A* 1xyb_A* 1xyc_A* 1xya_A* 1xyl_A 1xym_A* 1dxi_A 3gnx_A* 1gw9_A* 1xib_A 1xic_A* 1xid_A* 1xie_A* 1xif_A* 1xig_A* 1xih_A* 1xii_A* 1xij_A ...
Probab=47.06 E-value=44 Score=34.81 Aligned_cols=118 Identities=13% Similarity=0.100 Sum_probs=70.9
Q ss_pred HHHHHHHHhhhcCCCcceeecCC----------C---CH----------HHHHHHhh-h-cCccccCCCCCcchhhhhhc
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIH----------F---AP----------SVALRVAE-C-FDKIRVNPGNFADRRAQFEQ 184 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIH----------F---~~----------~lAl~a~~-~-vdkiRINPGNig~~~k~f~~ 184 (724)
.++++++.|.+.|..+..++=.. | +. +-+++.++ . +..|++.||..+.
T Consensus 70 ~~~~l~~~l~~~GL~i~~~~~~~~~~p~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~~vvv~~g~~~~------- 142 (386)
T 1muw_A 70 HIKRFRQALDATGMTVPMATTNLFTHPVFKDGGFTANDRDVRRYALRKTIRNIDLAVELGAKTYVAWGGREGA------- 142 (386)
T ss_dssp HHHHHHHHHHHHTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEE-------
T ss_pred HHHHHHHHHHHhCCeEEEEecccccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCcc-------
Confidence 35577777777888887765321 2 11 11222222 3 7889999986532
Q ss_pred cccc-hHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCc-EE
Q 004907 185 LEYT-DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHN-FL 261 (724)
Q Consensus 185 ~~Yt-deey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~d-iv 261 (724)
.|. +..+.+.++++.+.+.++.+.|+++|..|||++ |+..-+ +- ..+..| .-+.++++++.|-.+ +.
T Consensus 143 -~~~~~~~~~~~~~~~~e~L~~l~~~A~~~G~~v~l~lE~~~~e~-~~-~~~~~t-------~~~~~~li~~v~~pn~vg 212 (386)
T 1muw_A 143 -ESGAAKDVRVALDRMKEAFDLLGEYVTSQGYDIRFAIEPKPNEP-RG-DILLPT-------VGHALAFIERLERPELYG 212 (386)
T ss_dssp -SSTTSCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSSSS-SS-EESSCS-------HHHHHHHHTTSSSGGGEE
T ss_pred -cccccCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeeCCCCC-cc-cccCCC-------HHHHHHHHHHhCCccceE
Confidence 111 123667889999999999999999997788887 442110 00 012223 334556777777765 66
Q ss_pred EEE
Q 004907 262 FSM 264 (724)
Q Consensus 262 iS~ 264 (724)
+-+
T Consensus 213 l~l 215 (386)
T 1muw_A 213 VNP 215 (386)
T ss_dssp ECC
T ss_pred EEe
Confidence 655
No 186
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=46.96 E-value=56 Score=34.39 Aligned_cols=102 Identities=16% Similarity=0.199 Sum_probs=69.1
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCchHHHh--------hcCCCchHHHHHHHHHHHHHHHCCCCcEEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRKLDFHNFLFS 263 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il~--------~yg~t~~amVeSAle~~~i~e~~~F~diviS 263 (724)
.+|+++|.+.|..-.+.|++.|.- |=|=.-||-|-..+++ +||.+.+.-..-++|-++-+++.==.++.|+
T Consensus 150 ~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~ 229 (363)
T 3l5l_A 150 LDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLT 229 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEE
Confidence 356777888888888888887753 4555557777444443 5776666666667777776665411455677
Q ss_pred EecCCh-----h-HHHHHHHHHHHHhhcCCCCcccccc
Q 004907 264 MKASNP-----V-VMVQAYRLLVAEMYVHGWDYPLHLG 295 (724)
Q Consensus 264 ~KaSnv-----~-~~v~Ayrlla~~m~~~g~dYPLHLG 295 (724)
+|-|-. - ...+-+..+++++++.|.|| ||+-
T Consensus 230 vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~-i~vs 266 (363)
T 3l5l_A 230 ARFGVLEYDGRDEQTLEESIELARRFKAGGLDL-LSVS 266 (363)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCE-EEEE
T ss_pred EEecchhcCCCCCCCHHHHHHHHHHHHHcCCCE-EEEe
Confidence 776621 1 56777788999999999997 6654
No 187
>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}
Probab=45.73 E-value=67 Score=33.73 Aligned_cols=124 Identities=14% Similarity=0.280 Sum_probs=74.2
Q ss_pred CCCCCHHHHHHHHHHHHH---------HH-----HHHHHHhhhcCCCcceeecCCCC--HHHHH----HHhhh-cCcccc
Q 004907 112 NDTKDVAGTVEEVMRIAD---------AC-----FEIKNSLVQKNYNIPLVADIHFA--PSVAL----RVAEC-FDKIRV 170 (724)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~---------a~-----~~I~~~L~~~~~~iPLVADIHF~--~~lAl----~a~~~-vdkiRI 170 (724)
-|..|.+..++=+.++.. .+ ..+.+.|.+. ...++++|.||. ++-.- .+++. +|-+=+
T Consensus 31 LD~~~~~eal~l~~~l~~~v~~vKVG~~lf~~~G~~~V~~Lk~~-~g~~IflDlKl~DIpnTv~~av~~~a~lGaD~vTV 109 (303)
T 3ru6_A 31 LDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFIEELKKV-DDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINI 109 (303)
T ss_dssp CCCSSHHHHHHHHHHTTTSSCEEEECHHHHHHHTHHHHHHHHHH-CCCEEEEEEEECSCHHHHHHHHHHHHTTTCSEEEE
T ss_pred eCCCCHHHHHHHHHHhCCCccEEEeCHHHHHHhCHHHHHHHHHh-hCCCEEEEeeeccCchhHHHHHHHHHhcCCCEEEE
Confidence 355566666555555544 11 1223334333 368999999997 43332 23343 677777
Q ss_pred CCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC-cEEEee-ccCCCchHHHhh-cCCCchHHHHHHHH
Q 004907 171 NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR-AVRIGT-NHGSLSDRIMSY-YGDSPRGMVESAFE 247 (724)
Q Consensus 171 NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~-~IRIGv-N~GSL~~~il~~-yg~t~~amVeSAle 247 (724)
+| +++.+ -++++++.+++++. |.=+|| ---|.+..-+.. +. ..+-+.+++
T Consensus 110 Ha--~~G~~----------------------~m~aa~e~a~~~~~~~~llaVtvLTS~s~~~l~~l~~---~~~~e~V~~ 162 (303)
T 3ru6_A 110 HA--SAGKI----------------------AIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSIYR---QKIEEAVIN 162 (303)
T ss_dssp EG--GGCHH----------------------HHHHHHHHHTTSSSCCEEEEECSCTTCCHHHHHHHHS---SCHHHHHHH
T ss_pred ec--cCCHH----------------------HHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHc---CCHHHHHHH
Confidence 76 33322 47788899988874 444675 344555433332 32 345677888
Q ss_pred HHHHHHHCCCCcEEEE
Q 004907 248 FARICRKLDFHNFLFS 263 (724)
Q Consensus 248 ~~~i~e~~~F~diviS 263 (724)
.++...+.|.+-+|-|
T Consensus 163 lA~~a~~~G~dGvV~s 178 (303)
T 3ru6_A 163 FSKISYENGLDGMVCS 178 (303)
T ss_dssp HHHHHHHTTCSEEECC
T ss_pred HHHHHHHcCCCEEEEC
Confidence 9999999999877764
No 188
>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo sapiens}
Probab=45.23 E-value=42 Score=36.41 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=47.1
Q ss_pred HHHHHHHHhhhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
++..++++|. .+++||.+|=++ +..-+..+++ ++|-|.+.|+..|.-. ...++
T Consensus 287 ~~~~l~~~l~--~~~iPIa~gE~~~~~~~~~~~l~~~a~div~~d~~~~GGit----------------------~~~ki 342 (441)
T 4a35_A 287 GHATISKALV--PLGIGIATGEQCHNRVIFKQLLQAKALQFLQIDSCRLGSVN----------------------ENLSV 342 (441)
T ss_dssp HHHHHHHHHG--GGTCEEEECTTCCSHHHHHHHHHTTCCSEECCCTTTSSHHH----------------------HHHHH
T ss_pred HHHHHHHhcc--CCCCCEEeCCccccHHHHHHHHHcCCCCEEEECccccCCHH----------------------HHHHH
Confidence 4455555321 367999999765 4555556665 4999999999999744 35779
Q ss_pred HHHHHhcCCcE
Q 004907 207 VEKCKKYGRAV 217 (724)
Q Consensus 207 v~~ake~g~~I 217 (724)
...|+.+|+++
T Consensus 343 a~lA~~~gv~v 353 (441)
T 4a35_A 343 LLMAKKFEIPV 353 (441)
T ss_dssp HHHHHHTTCCB
T ss_pred HHHHHHcCCEE
Confidence 99999999997
No 189
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=45.08 E-value=1.6e+02 Score=28.36 Aligned_cols=121 Identities=17% Similarity=0.163 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHH-----------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhhh
Q 004907 115 KDVAGTVEEVMRIAD-----------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQFE 183 (724)
Q Consensus 115 ~Dv~atv~Qi~~L~~-----------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f~ 183 (724)
.+.+..+++.+++ + ....|++ ..++|+| +|..+.-=-|.|+..+.+. + ++||-=. |.
T Consensus 36 ~~l~~~v~~a~~~-~~~~dVIISRGgta~~lr~-----~~~iPVV-~I~~s~~Dil~al~~a~~~--~-~kIavvg--~~ 103 (196)
T 2q5c_A 36 ASLTRASKIAFGL-QDEVDAIISRGATSDYIKK-----SVSIPSI-SIKVTRFDTMRAVYNAKRF--G-NELALIA--YK 103 (196)
T ss_dssp CCHHHHHHHHHHH-TTTCSEEEEEHHHHHHHHT-----TCSSCEE-EECCCHHHHHHHHHHHGGG--C-SEEEEEE--ES
T ss_pred CCHHHHHHHHHHh-cCCCeEEEECChHHHHHHH-----hCCCCEE-EEcCCHhHHHHHHHHHHhh--C-CcEEEEe--Cc
Confidence 4578888888888 6 4455554 5789975 7887765555555543321 1 1332211 22
Q ss_pred ccccchHHHHHHhh-hh-------hhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcC-C-----CchHHHHHHHHHH
Q 004907 184 QLEYTDDEYQKELQ-HI-------EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-D-----SPRGMVESAFEFA 249 (724)
Q Consensus 184 ~~~Ytdeey~~ele-~I-------~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg-~-----t~~amVeSAle~~ 249 (724)
+..+.-+.+.+-+. .| .+...+.++.+|+.|+-+=|| |.+..++.++|| + +.+.=|+.|++.+
T Consensus 104 ~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~i~~l~~~G~~vvVG---~~~~~~~A~~~Gl~~vli~sg~eSI~~Ai~eA 180 (196)
T 2q5c_A 104 HSIVDKHEIEAMLGVKIKEFLFSSEDEITTLISKVKTENIKIVVS---GKTVTDEAIKQGLYGETINSGEESLRRAIEEA 180 (196)
T ss_dssp SCSSCHHHHHHHHTCEEEEEEECSGGGHHHHHHHHHHTTCCEEEE---CHHHHHHHHHTTCEEEECCCCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCeEEEC---CHHHHHHHHHcCCcEEEEecCHHHHHHHHHHH
Confidence 22222122222111 00 134677999999999999777 778888899988 2 2245555555555
Q ss_pred H
Q 004907 250 R 250 (724)
Q Consensus 250 ~ 250 (724)
.
T Consensus 181 ~ 181 (196)
T 2q5c_A 181 L 181 (196)
T ss_dssp H
T ss_pred H
Confidence 4
No 190
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=44.93 E-value=15 Score=37.51 Aligned_cols=57 Identities=19% Similarity=0.272 Sum_probs=44.6
Q ss_pred cCC-CchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCC-CccccccccccC
Q 004907 234 YGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGW-DYPLHLGVTEAG 300 (724)
Q Consensus 234 yg~-t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~-dYPLHLGVTEAG 300 (724)
||. +.+.+.+-+++.++.|++.|.+-|+|.| |... ..++..|.++ + +.|+ +||.|++
T Consensus 46 YG~~~~~~i~~~~~~~~~~L~~~g~~~iVIAC---NTa~-~~al~~lr~~-----~~~iPv-igiiep~ 104 (268)
T 3out_A 46 YGTKSRATIQKFAAQTAKFLIDQEVKAIIIAC---NTIS-AIAKDIVQEI-----AKAIPV-IDVITAG 104 (268)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHTTCSEEEECC---HHHH-HHHHHHHHHH-----HTTSCE-EEHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeC---CChH-HHHHHHHHHh-----cCCCCE-EeccHHH
Confidence 563 5688999999999999999999999998 6442 2467888888 6 7786 6776654
No 191
>2pge_A MENC; OSBS, NYSGXRC, PSI-II, structural genomics, protein structure initiative; 1.60A {Desulfotalea psychrophila LSV54}
Probab=44.25 E-value=21 Score=37.51 Aligned_cols=66 Identities=11% Similarity=0.083 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCC--HHH-HHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFA--PSV-ALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFS 204 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~--~~l-Al~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~ 204 (724)
++..+++ .+++||++|=.+. +.. +..+++ +++-|.|.|..+|.-. ...
T Consensus 250 ~~~~l~~-----~~~ipIa~dE~~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGit----------------------~~~ 302 (377)
T 2pge_A 250 EMAALCA-----NSPLAIALDEELIGLGAEQRSAMLDAIRPQYIILKPSLLGGFH----------------------YAG 302 (377)
T ss_dssp HHHHHHH-----HCSSCEEESGGGTTCCTHHHHHHHHHHCCSEEEECHHHHTSHH----------------------HHH
T ss_pred HHHHHHh-----hCCCcEEECCccCCcchHHHHHHHHhCCCCEEEECchhcCCHH----------------------HHH
Confidence 5555655 4789999996653 222 334444 4999999999998744 357
Q ss_pred HHHHHHHhcCCcEEEeec
Q 004907 205 PLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN 222 (724)
+++..|+++|+++=+|..
T Consensus 303 ~i~~~A~~~g~~~~~~~~ 320 (377)
T 2pge_A 303 QWIELARERGIGFWITSA 320 (377)
T ss_dssp HHHHHHHHTTCEEEEBCC
T ss_pred HHHHHHHHCCCeEEecCC
Confidence 789999999999877653
No 192
>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}
Probab=44.00 E-value=1.1e+02 Score=32.11 Aligned_cols=89 Identities=8% Similarity=0.082 Sum_probs=60.5
Q ss_pred cCCCCCeEEeeccCCCCCCHHHHHHHHHHHHH------------------HHHHHHHHhhhcCC-CcceeecCCCCHHHH
Q 004907 98 IGSEHPIRVQTMTTNDTKDVAGTVEEVMRIAD------------------ACFEIKNSLVQKNY-NIPLVADIHFAPSVA 158 (724)
Q Consensus 98 IGG~~PI~VQSMt~t~T~Dv~atv~Qi~~L~~------------------a~~~I~~~L~~~~~-~iPLVADIHF~~~lA 158 (724)
+|.+.++.|= .| ..-+.+.+++-+.+|++ .+..|++ .+ ++||++|=.+++.-+
T Consensus 187 ~G~~~~l~vD--an-~~~~~~~a~~~~~~l~~~g~~i~~iEqP~~~~~~~~~~~l~~-----~~~~iPIa~dE~~~~~~~ 258 (389)
T 2oz8_A 187 VPAGSKVMID--PN-EAWTSKEALTKLVAIREAGHDLLWVEDPILRHDHDGLRTLRH-----AVTWTQINSGEYLDLQGK 258 (389)
T ss_dssp SCTTCEEEEE--CT-TCBCHHHHHHHHHHHHHTTCCCSEEESCBCTTCHHHHHHHHH-----HCCSSEEEECTTCCHHHH
T ss_pred hCCCCeEEEE--CC-CCCCHHHHHHHHHHHHhcCCCceEEeCCCCCcCHHHHHHHHh-----hCCCCCEEeCCCCCHHHH
Confidence 5667777762 12 22356666666666655 3445544 46 899999988877777
Q ss_pred HHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 159 LRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 159 l~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
..+++. +|-|.|. |.-. ...+++..|+++|+++=+|
T Consensus 259 ~~~i~~~~~d~v~ik----GGit----------------------~a~~i~~~A~~~gi~~~~~ 296 (389)
T 2oz8_A 259 RLLLEAHAADILNVH----GQVT----------------------DVMRIGWLAAELGIPISIG 296 (389)
T ss_dssp HHHHHTTCCSEEEEC----SCHH----------------------HHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHcCCCCEEEEC----cCHH----------------------HHHHHHHHHHHcCCeEeec
Confidence 777764 8877666 4422 2567999999999998776
No 193
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=43.01 E-value=95 Score=30.10 Aligned_cols=140 Identities=11% Similarity=0.088 Sum_probs=81.0
Q ss_pred CeEEeeccCCCC--CCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceee----cCCC---CHH-
Q 004907 103 PIRVQTMTTNDT--KDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVA----DIHF---APS- 156 (724)
Q Consensus 103 PI~VQSMt~t~T--~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVA----DIHF---~~~- 156 (724)
.|.+++++-.+. .|++.+++.+.++-= .++++++.|.+.+..+..+- ++.| ++.
T Consensus 3 kigi~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~~~d~~~ 82 (294)
T 3vni_A 3 KHGIYYAYWEQEWEADYKYYIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITLTVGHGPSAEQNLSSPDPDI 82 (294)
T ss_dssp CEEEEGGGGCSSSCCCHHHHHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEEEEEECCCGGGCTTCSCHHH
T ss_pred eEEEehhhhcCCcCcCHHHHHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeEEEeecCCCCcCCCCCCHHH
Confidence 356777765552 467777777766521 56788887777776655421 1222 222
Q ss_pred ---------HHHHHhh-h-cCccc--cCCCCCcchhhhhhccccc-hHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-
Q 004907 157 ---------VALRVAE-C-FDKIR--VNPGNFADRRAQFEQLEYT-DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT- 221 (724)
Q Consensus 157 ---------lAl~a~~-~-vdkiR--INPGNig~~~k~f~~~~Yt-deey~~ele~I~e~~~~vv~~ake~g~~IRIGv- 221 (724)
-+++.++ . +..|+ +.||. +. .|+ +..+.+.++++.+.+.++.+.|+++|+. |++
T Consensus 83 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~--l~lE 151 (294)
T 3vni_A 83 RKNAKAFYTDLLKRLYKLDVHLIGGALYSYW-PI--------DYTKTIDKKGDWERSVESVREVAKVAEACGVD--FCLE 151 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEESTTSCS-SC--------CTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCE--EEEE
T ss_pred HHHHHHHHHHHHHHHHHhCCCeeeccccCCC-CC--------cCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE--EEEE
Confidence 1233333 2 66676 34432 10 011 1235567788889999999999999975 564
Q ss_pred ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 222 NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 222 N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
|++.-+ ..+..|+ -+..+++++.|-.++.+-+
T Consensus 152 n~~~~~----~~~~~~~-------~~~~~l~~~v~~~~vg~~~ 183 (294)
T 3vni_A 152 VLNRFE----NYLINTA-------QEGVDFVKQVDHNNVKVML 183 (294)
T ss_dssp CCCTTT----CSSCCSH-------HHHHHHHHHHCCTTEEEEE
T ss_pred ecCccc----CcccCCH-------HHHHHHHHHcCCCCEEEEE
Confidence 333211 1112333 3445677788888888887
No 194
>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}
Probab=42.29 E-value=1.5e+02 Score=30.87 Aligned_cols=84 Identities=15% Similarity=0.155 Sum_probs=60.9
Q ss_pred CCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccc
Q 004907 214 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLH 293 (724)
Q Consensus 214 g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLH 293 (724)
++++||=.|.| + ++ +.|+++++.|++.|.+-|-=-+. ..-++.++.|.++ .+.|+=
T Consensus 190 d~~l~vD~n~~-~----------~~----~~a~~~~~~l~~~~i~~iEqP~~----~~~~~~~~~l~~~-----~~iPI~ 245 (384)
T 2pgw_A 190 DARLRLDANEG-W----------SV----HDAINMCRKLEKYDIEFIEQPTV----SWSIPAMAHVREK-----VGIPIV 245 (384)
T ss_dssp TCEEEEECTTC-C----------CH----HHHHHHHHHHGGGCCSEEECCSC----TTCHHHHHHHHHH-----CSSCEE
T ss_pred CcEEEEecCCC-C----------CH----HHHHHHHHHHHhcCCCEEeCCCC----hhhHHHHHHHHhh-----CCCCEE
Confidence 68899877632 3 22 56788999999998865543332 2346778888887 677763
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecC
Q 004907 294 LGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLT 330 (724)
Q Consensus 294 LGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT 330 (724)
-++.+.|.-.+-.++.+|--|-|.+-++
T Consensus 246 ---------~de~i~~~~~~~~~i~~~~~d~v~ik~~ 273 (384)
T 2pgw_A 246 ---------ADQAAFTLYDVYEICRQRAADMICIGPR 273 (384)
T ss_dssp ---------ESTTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred ---------EeCCcCCHHHHHHHHHcCCCCEEEEcch
Confidence 3466778889999999999999887654
No 195
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=42.21 E-value=38 Score=33.69 Aligned_cols=81 Identities=7% Similarity=0.023 Sum_probs=48.3
Q ss_pred cCccccCCCCCcchhhhhhccccch-HHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec---cCCCchHHHhhcCCCchH
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYTD-DEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN---HGSLSDRIMSYYGDSPRG 240 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Ytd-eey~~ele~I~e~~~~vv~~ake~g~~IRIGvN---~GSL~~~il~~yg~t~~a 240 (724)
+..|.+.+|.+..+. |++ ...++.++++.+.++++.+.|+++|+. .|++- ++. .++.|++.
T Consensus 128 a~~v~~~~g~~~~~~-------~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-~l~lE~~~~~~-------~~~~t~~~ 192 (316)
T 3qxb_A 128 VPATGMPFGSYSAAD-------ALNPARREEIYAIARDMWIELAAYAKRQGLS-MLYVEPVPLAT-------EFPSSAAD 192 (316)
T ss_dssp CCEEEECCBBCCHHH-------HTCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-EEEECCCSCTT-------BSSCSHHH
T ss_pred CCEEEecCCCcCccc-------cCCcccHHHHHHHHHHHHHHHHHHHHhcCCe-EEEEEecCCcc-------ccCCCHHH
Confidence 666766676543211 222 235677889999999999999999976 14642 221 23445432
Q ss_pred HHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 241 MVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 241 mVeSAle~~~i~e~~~F~diviS~ 264 (724)
+.+.++.++..|-.++.+-+
T Consensus 193 ----~~~l~~~v~~~~~~~vg~~l 212 (316)
T 3qxb_A 193 ----AARLMADLDGRTEIPVRLLV 212 (316)
T ss_dssp ----HHHHHHHHTTTSSSCEEEEE
T ss_pred ----HHHHHHHHhccCCCCEEEEE
Confidence 33444444333767777777
No 196
>4h1z_A Enolase Q92ZS5; dehydratase, magnesium binding site, enzyme function initiat isomerase; 2.01A {Sinorhizobium meliloti} PDB: 2ppg_A
Probab=41.81 E-value=28 Score=37.25 Aligned_cols=82 Identities=6% Similarity=0.023 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceeecCCCC-HHHHHHHhh--hcCccccCCCCCc
Q 004907 116 DVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFA 176 (724)
Q Consensus 116 Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGNig 176 (724)
|.+.+++-+++|++ ++.++++ .+++||.+|=++. ..-+...++ ++|=+.+.++. |
T Consensus 244 ~~~~A~~~~~~l~~~~l~~iEqP~~~~d~~~~~~l~~-----~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~-G 317 (412)
T 4h1z_A 244 TASEAVALIKAMEPHGLWFAEAPVRTEDIDGLARVAA-----SVSTAIAVGEEWRTVHDMVPRVARRALAIVQPEMGH-K 317 (412)
T ss_dssp CHHHHHHHHHHHGGGCEEEEECCSCTTCHHHHHHHHH-----HCSSEEEECTTCCSHHHHHHHHHTTCCSEECCCHHH-H
T ss_pred CHHHHHHHHHhhcccccceecCCCCccchHHHHHHHh-----hcCCccccCCcccchHhHHHHHHcCCCCEEEecCCC-C
Confidence 55666666666665 4555555 6899999997764 333444544 37777666653 4
Q ss_pred chhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCC
Q 004907 177 DRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGS 225 (724)
Q Consensus 177 ~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GS 225 (724)
.-. ...++...|+.+|+++=+|.++||
T Consensus 318 Git----------------------~~~kia~~A~~~gi~v~~h~~~~~ 344 (412)
T 4h1z_A 318 GIT----------------------QFMRIGAYAHVHHIKVIPHATIGA 344 (412)
T ss_dssp HHH----------------------HHHHHHHHHHHTTCEECCCCCSSC
T ss_pred ChH----------------------HHHHHHHHHHHCCCcEEecCCcch
Confidence 311 356789999999999977765554
No 197
>4h2h_A Mandelate racemase/muconate lactonizing enzyme; enolase, mandelate racemase subgroup, enzyme function initia EFI, structural genomics; HET: 0XW; 1.70A {Pelagibaca bermudensis} PDB: 2pmq_A*
Probab=41.70 E-value=26 Score=36.81 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=46.7
Q ss_pred hhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC
Q 004907 139 VQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 215 (724)
Q Consensus 139 ~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 215 (724)
+++.+++|+.+|=+. +..-+...++ ++|-+.+.|+..|.-. ...++...|+.+|+
T Consensus 239 l~~~~~~pia~dE~~~~~~~~~~~~~~~~~d~v~~d~~~~GGit----------------------~~~~ia~~a~~~gi 296 (376)
T 4h2h_A 239 IRPLCHHALYMDEDGTSLNTVITAAATSLVDGFGMKVSRIGGLQ----------------------HMRAFRDFCAARNL 296 (376)
T ss_dssp HGGGCCSCEEESTTCCSHHHHHHHHHTTCCSEECCBHHHHTSHH----------------------HHHHHHHHHHHHTC
T ss_pred hhhcccCccccCcccCCHHHHHHHHHhhccCccccccceeCCcH----------------------HHHHHHHHHHHcCC
Confidence 345688999999764 4444455555 3899999999998743 35778999999999
Q ss_pred cEEEeeccC
Q 004907 216 AVRIGTNHG 224 (724)
Q Consensus 216 ~IRIGvN~G 224 (724)
++=+|-.+|
T Consensus 297 ~~~~~~~~~ 305 (376)
T 4h2h_A 297 PHTCDDAWG 305 (376)
T ss_dssp CEECBCSSC
T ss_pred CEEeCCCCc
Confidence 986664443
No 198
>4h83_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, enzyme function initiative; 2.09A {Marine actinobacterium PHSC20C1} PDB: 3no1_A 3msy_A
Probab=41.56 E-value=47 Score=35.14 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=42.3
Q ss_pred hcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++||.+|=+. +..-+...++ ++|-|.+.++..|.-. ...++...|+.+|++
T Consensus 257 ~~~~~ipIa~dE~~~~~~~~~~~i~~~a~d~i~~d~~~~GGit----------------------~~~kia~~A~~~gv~ 314 (388)
T 4h83_A 257 RYQGSVPVCAGQTEFSASGCRDLMETGAIDVCNFDSSWSGGPT----------------------AWLRTAAIATSYDVQ 314 (388)
T ss_dssp HHHSSSCEEECTTCSSHHHHHHHHHHTCCSEECCCGGGTTCHH----------------------HHHHHHHHHHHTTCE
T ss_pred HhhcCCCccCCccccChHhHHHHHHcCCCCeEeecceeCCCHH----------------------HHHHHHHHHHHCCCE
Confidence 34689999999765 4455556665 3999999999998743 256788999999986
Q ss_pred E
Q 004907 217 V 217 (724)
Q Consensus 217 I 217 (724)
+
T Consensus 315 v 315 (388)
T 4h83_A 315 M 315 (388)
T ss_dssp E
T ss_pred E
Confidence 5
No 199
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=41.24 E-value=59 Score=31.32 Aligned_cols=143 Identities=8% Similarity=0.009 Sum_probs=77.5
Q ss_pred CeEEeeccCCC--CCCHHHHHHHHHHHHH----------------HHHHHHHHhhhcCCCcceee----cCCCC---H--
Q 004907 103 PIRVQTMTTND--TKDVAGTVEEVMRIAD----------------ACFEIKNSLVQKNYNIPLVA----DIHFA---P-- 155 (724)
Q Consensus 103 PI~VQSMt~t~--T~Dv~atv~Qi~~L~~----------------a~~~I~~~L~~~~~~iPLVA----DIHF~---~-- 155 (724)
.|.+|+.+-++ +.|.+..++.+.++-= .++++++.|.+.+..+..++ ++.|. +
T Consensus 3 kig~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~l~~~d~~~ 82 (290)
T 2qul_A 3 KVGMFYTYWSTEWMVDFPATAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTVMCCIGLKSEYDFASPDKSV 82 (290)
T ss_dssp CEEEETTSSCSSSCCCHHHHHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEEEEEEEECGGGCTTCSCHHH
T ss_pred ceeEEeeeecCcccccHHHHHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCceEEecCCCCCCCCCCCCHHH
Confidence 35667666444 3567766666655411 35678887777777766654 33332 1
Q ss_pred --------HHHHHHhh-h-cCccccCCC-CCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-cc
Q 004907 156 --------SVALRVAE-C-FDKIRVNPG-NFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NH 223 (724)
Q Consensus 156 --------~lAl~a~~-~-vdkiRINPG-Nig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~ 223 (724)
+-+++.++ . +..|++.+- ..|.. .|. .+....+.++++.+.++++.+.|+++|+ +|++ |+
T Consensus 83 r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~--~~~----~~~~~~~~~~~~~~~l~~l~~~a~~~gv--~l~lEn~ 154 (290)
T 2qul_A 83 RDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQS--PPL----DMKDKRPYVDRAIESVRRVIKVAEDYGI--IYALEVV 154 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCC--CCT----TCCCCHHHHHHHHHHHHTTHHHHHHHTC--EEEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEeeccccCCcc--cCC----CcccHHHHHHHHHHHHHHHHHHHHHcCC--EEEEEeC
Confidence 12222232 2 555553210 00110 000 1112345567788888899999999997 5566 44
Q ss_pred CCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 224 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 224 GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
...+ ..+..++ -+..+++++.|-.++.+-+
T Consensus 155 ~~~~----~~~~~~~-------~~~~~l~~~~~~~~~g~~~ 184 (290)
T 2qul_A 155 NRFE----QWLCNDA-------KEAIAFADAVDSPACKVQL 184 (290)
T ss_dssp CTTT----CSSCCSH-------HHHHHHHHHHCCTTEEEEE
T ss_pred cccc----ccccCCH-------HHHHHHHHHcCCCCEEEEE
Confidence 4321 0111233 3456677888878888887
No 200
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=41.03 E-value=1.8e+02 Score=29.92 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=74.7
Q ss_pred CCCcceeecCCCCHH-HHHHH-------hhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHh
Q 004907 142 NYNIPLVADIHFAPS-VALRV-------AEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 212 (724)
Q Consensus 142 ~~~iPLVADIHF~~~-lAl~a-------~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake 212 (724)
..++|||||+-|-|. -.+.+ ++. +..|-|-=|-... .| ..++-+|+ -++++.+++++++
T Consensus 74 ~~~~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaagv~iED~~~~~-~k----~l~~~~e~-------~~~I~aa~~a~~~ 141 (275)
T 2ze3_A 74 AVAIPVNADIEAGYGHAPEDVRRTVEHFAALGVAGVNLEDATGLT-PT----ELYDLDSQ-------LRRIEAARAAIDA 141 (275)
T ss_dssp HCSSCEEEECTTCSSSSHHHHHHHHHHHHHTTCSEEEEECBCSSS-SS----CBCCHHHH-------HHHHHHHHHHHHH
T ss_pred hcCCCEEeecCCCCCCCHHHHHHHHHHHHHcCCcEEEECCCcCCC-CC----ccCCHHHH-------HHHHHHHHHhHhh
Confidence 467999999999875 23222 222 5555554332211 11 22333333 3355667777777
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
.|+|.+|=.-.-++- ...|.+++.=.+.|++-++.+++.|=+=|.+-... + .+-.+.+++. ++.|+
T Consensus 142 ~g~~~~i~aRtda~~----~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~e~~~-~----~~~~~~i~~~-----~~~P~ 207 (275)
T 2ze3_A 142 SGVPVFLNARTDTFL----KGHGATDEERLAETVRRGQAYADAGADGIFVPLAL-Q----SQDIRALADA-----LRVPL 207 (275)
T ss_dssp HTSCCEEEEECCTTT----TTCSSSHHHHHHHHHHHHHHHHHTTCSEEECTTCC-C----HHHHHHHHHH-----CSSCE
T ss_pred cCCCeEEEEechhhh----ccccccchhhHHHHHHHHHHHHHCCCCEEEECCCC-C----HHHHHHHHHh-----cCCCE
Confidence 799987754332321 01122232236889999999999999988886632 2 3445678888 78997
Q ss_pred c
Q 004907 293 H 293 (724)
Q Consensus 293 H 293 (724)
.
T Consensus 208 n 208 (275)
T 2ze3_A 208 N 208 (275)
T ss_dssp E
T ss_pred E
Confidence 4
No 201
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=40.22 E-value=47 Score=34.72 Aligned_cols=117 Identities=9% Similarity=0.052 Sum_probs=64.9
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
++.+.|...-. +-...|+++ ++.|||- ..-...|-. ..+....+..-+++.++++.||++|..++++.-
T Consensus 89 ~~~i~~l~~~~-~~i~~a~~~g~~~v~i~----~~~s~~~~~-----~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~ 158 (337)
T 3ble_A 89 RIEILGFVDGN-KTVDWIKDSGAKVLNLL----TKGSLHHLE-----KQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLE 158 (337)
T ss_dssp GEEEEEESSTT-HHHHHHHHHTCCEEEEE----EECSHHHHH-----HHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCeEEEEccch-hhHHHHHHCCCCEEEEE----EecCHHHHH-----HHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
Confidence 35666666543 344456666 8888861 111100000 001112233345577799999999999987742
Q ss_pred cCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHHH
Q 004907 223 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVAE 282 (724)
Q Consensus 223 ~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~v~Ayrlla~~ 282 (724)
. .-. ....=.+-.++.++.++++|-+. |+++-+ .|..+-+-.+.|.++
T Consensus 159 ~------~~~----~~~~~~~~~~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 210 (337)
T 3ble_A 159 D------WSN----GFRNSPDYVKSLVEHLSKEHIER--IFLPDTLGVLSPEETFQGVDSLIQK 210 (337)
T ss_dssp T------HHH----HHHHCHHHHHHHHHHHHTSCCSE--EEEECTTCCCCHHHHHHHHHHHHHH
T ss_pred E------CCC----CCcCCHHHHHHHHHHHHHcCCCE--EEEecCCCCcCHHHHHHHHHHHHHh
Confidence 2 000 01111355677888899999874 555543 466666666666666
No 202
>2j6v_A UV endonuclease, UVDE; plasmid, TIM barrel, DNA repair, DNA binding protein, lyase; HET: KCX ALY; 1.55A {Thermus thermophilus} PDB: 3bzg_A 3c0s_A* 3c0l_A 3c0q_A* 3bzj_A
Probab=39.69 E-value=2.9e+02 Score=28.29 Aligned_cols=72 Identities=14% Similarity=0.166 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHhcCCcEEEeeccCC-------CchHHHhhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEEecCChhH
Q 004907 201 EVFSPLVEKCKKYGRAVRIGTNHGS-------LSDRIMSYYGDSPRGMVESAFEFARICRKLDFH--NFLFSMKASNPVV 271 (724)
Q Consensus 201 e~~~~vv~~ake~g~~IRIGvN~GS-------L~~~il~~yg~t~~amVeSAle~~~i~e~~~F~--diviS~KaSnv~~ 271 (724)
+.++++-+.|+++|+. |-+ |++ .++++. +.=++.-.+.+++|+.+|.. -++|-.=+. ...
T Consensus 103 ~~~~~~~~~~~~~gi~--i~~-H~py~iNL~S~~~e~r-------e~Si~~l~~~l~~a~~lG~~~a~~v~HpG~~-~~~ 171 (301)
T 2j6v_A 103 EELARLGALARAFGQR--LSM-HPGQYVNPGSPDPEVV-------ERSLAELRYSARLLSLLGAEDGVLVLHLGGA-YGE 171 (301)
T ss_dssp HHHHHHHHHHHHTTCE--EEE-CCCTTCCTTCSCHHHH-------HHHHHHHHHHHHHHHHTTCTTCEEEEECCCC-TTC
T ss_pred HHHHHHHHHHHHcCCe--EEE-eCchhhcCCCCCHHHH-------HHHHHHHHHHHHHHHHcCCCCCEEEECCCcC-CCC
Confidence 4566777889999985 454 444 222222 22345555677899999965 555544321 111
Q ss_pred HHHHHHHHHHHh
Q 004907 272 MVQAYRLLVAEM 283 (724)
Q Consensus 272 ~v~Ayrlla~~m 283 (724)
.-++++.+++-+
T Consensus 172 ~e~~~~r~~e~l 183 (301)
T 2j6v_A 172 KGKALRRFVENL 183 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 346777777774
No 203
>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*
Probab=39.68 E-value=1.2e+02 Score=31.49 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=56.1
Q ss_pred HHHHHHHHHhcCCcE--EEeeccCCCchH--HHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHH
Q 004907 203 FSPLVEKCKKYGRAV--RIGTNHGSLSDR--IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL 278 (724)
Q Consensus 203 ~~~vv~~ake~g~~I--RIGvN~GSL~~~--il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrl 278 (724)
+.+.|+++.+.|+|+ -||.+-=|.... .. .-|.| +. .+.+++-++.+++.|=+-|++-+-. . +..+.
T Consensus 120 ~~~~I~al~~agIpV~gHiGLtPQs~~~~ggf~-v~grt-~~-a~~~i~rA~a~~eAGA~~ivlE~vp----~--~~a~~ 190 (275)
T 1o66_A 120 MAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYK-VQGRG-GK-AQALLNDAKAHDDAGAAVVLMECVL----A--ELAKK 190 (275)
T ss_dssp GHHHHHHHHHTTCCEEEEEESCGGGTTC-------------C-HHHHHHHHHHHHHTTCSEEEEESCC----H--HHHHH
T ss_pred HHHHHHHHHHcCCCeEeeeccCceeecccCCeE-EEeCh-HH-HHHHHHHHHHHHHcCCcEEEEecCC----H--HHHHH
Confidence 455677788899997 577655443211 11 11444 32 4899999999999999999998832 1 34567
Q ss_pred HHHHhhcCCCCccccccccccCCCCCCch
Q 004907 279 LVAEMYVHGWDYPLHLGVTEAGEGEDGRM 307 (724)
Q Consensus 279 la~~m~~~g~dYPLHLGVTEAG~~~~G~I 307 (724)
++++ ++-|+ +|+ =||..-||-|
T Consensus 191 it~~-----l~iP~-igI-GaG~~~dgQv 212 (275)
T 1o66_A 191 VTET-----VSCPT-IGI-GAGADCDGQV 212 (275)
T ss_dssp HHHH-----CSSCE-EEE-SSCSCSSEEE
T ss_pred HHHh-----CCCCE-EEE-CCCCCCCcce
Confidence 8888 67774 332 3666666654
No 204
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...
Probab=39.55 E-value=77 Score=33.45 Aligned_cols=98 Identities=20% Similarity=0.281 Sum_probs=63.6
Q ss_pred HhhhhhhhHHHHHHHHHhcCC-cEEEeeccCCCchHHH--------hhcCCCchHHHHHHHHHHHHHHH-CCCCcEEEEE
Q 004907 195 ELQHIEEVFSPLVEKCKKYGR-AVRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRK-LDFHNFLFSM 264 (724)
Q Consensus 195 ele~I~e~~~~vv~~ake~g~-~IRIGvN~GSL~~~il--------~~yg~t~~amVeSAle~~~i~e~-~~F~diviS~ 264 (724)
|++.+.+.|.+-.+.|++.|. .|-|=.-||-|=..++ .+||.+.+.-..-++|-++-+++ .|-+ .|++
T Consensus 155 eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~--~v~v 232 (364)
T 1vyr_A 155 EIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSAD--RIGI 232 (364)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGG--GEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCC--cEEE
Confidence 555666777777888888886 6777555776644443 46776555555556666664444 4533 5666
Q ss_pred ecCCh---------hHHHHHHHHHHHHhhcCCCCcccccc
Q 004907 265 KASNP---------VVMVQAYRLLVAEMYVHGWDYPLHLG 295 (724)
Q Consensus 265 KaSnv---------~~~v~Ayrlla~~m~~~g~dYPLHLG 295 (724)
|-|-- ....+-+..|++++++.|.|| ||+.
T Consensus 233 rls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~-i~v~ 271 (364)
T 1vyr_A 233 RVSPIGTFQNVDNGPNEEADALYLIEELAKRGIAY-LHMS 271 (364)
T ss_dssp EECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSE-EEEE
T ss_pred EEccccccccccCCCCCHHHHHHHHHHHHHhCCCE-EEEe
Confidence 66532 125666788899999999997 6664
No 205
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=38.89 E-value=1.4e+02 Score=31.34 Aligned_cols=86 Identities=14% Similarity=0.132 Sum_probs=60.6
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
.+++|+|=+|. ++ + .+.|+++++.|++.|..-|-=-+.. .-++.++.|.++ .+.|+
T Consensus 217 ~d~~l~vDan~-~~----------~----~~~ai~~~~~l~~~~i~~iE~P~~~----~~~~~~~~l~~~-----~~iPI 272 (410)
T 2gl5_A 217 DDADIIVEIHS-LL----------G----TNSAIQFAKAIEKYRIFLYEEPIHP----LNSDNMQKVSRS-----TTIPI 272 (410)
T ss_dssp SSSEEEEECTT-CS----------C----HHHHHHHHHHHGGGCEEEEECSSCS----SCHHHHHHHHHH-----CSSCE
T ss_pred CCCEEEEECCC-CC----------C----HHHHHHHHHHHHhcCCCeEECCCCh----hhHHHHHHHHhh-----CCCCE
Confidence 36889988873 23 2 3678889999999876433322222 347788888888 67776
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC
Q 004907 293 HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE 331 (724)
Q Consensus 293 HLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~ 331 (724)
=. ++.+.|.-.+-.++.+|--|-|.+-++-
T Consensus 273 a~---------dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 302 (410)
T 2gl5_A 273 AT---------GERSYTRWGYRELLEKQSIAVAQPDLCL 302 (410)
T ss_dssp EE---------CTTCCTTHHHHHHHHTTCCSEECCCTTT
T ss_pred Ee---------cCCcCCHHHHHHHHHcCCCCEEecCccc
Confidence 43 4556677888999999999998877654
No 206
>2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium}
Probab=37.83 E-value=2e+02 Score=30.22 Aligned_cols=86 Identities=14% Similarity=0.178 Sum_probs=62.4
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
.+++|+|=+|. ++ + ++.|+++++.|+++|..-|-=-+.. .-++.++.|.++ .+.|+
T Consensus 214 ~d~~l~vDan~-~~----------~----~~~a~~~~~~l~~~~i~~iE~P~~~----~~~~~~~~l~~~-----~~iPI 269 (407)
T 2o56_A 214 PDVDIIAEMHA-FT----------D----TTSAIQFGRMIEELGIFYYEEPVMP----LNPAQMKQVADK-----VNIPL 269 (407)
T ss_dssp TTSEEEEECTT-CS----------C----HHHHHHHHHHHGGGCCSCEECSSCS----SSHHHHHHHHHH-----CCSCE
T ss_pred CCCEEEEECCC-CC----------C----HHHHHHHHHHHHhcCCCEEeCCCCh----hhHHHHHHHHHh-----CCCCE
Confidence 36889888873 23 2 3678889999999887655432322 247788888888 67776
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC
Q 004907 293 HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE 331 (724)
Q Consensus 293 HLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~ 331 (724)
-. ++.+.+.-.+-.++.+|--|-|.+-++-
T Consensus 270 a~---------dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 299 (407)
T 2o56_A 270 AA---------GERIYWRWGYRPFLENGSLSVIQPDICT 299 (407)
T ss_dssp EE---------CTTCCHHHHHHHHHHTTCCSEECCCTTT
T ss_pred Ee---------CCCcCCHHHHHHHHHcCCCCEEecCccc
Confidence 43 4557788899999999999999887654
No 207
>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*
Probab=37.81 E-value=4.4e+02 Score=28.80 Aligned_cols=75 Identities=13% Similarity=0.227 Sum_probs=47.0
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----C
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----N 268 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----n 268 (724)
...++.+.+.+.++|+.||++|..+|.+.--+ |..+++- +++.++.+.+.|-+. |+++.+ .
T Consensus 143 ~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda---------~r~d~~~----~~~v~~~~~~~Ga~~--i~l~DTvG~~~ 207 (423)
T 3ivs_A 143 GKDMTYIIDSATEVINFVKSKGIEVRFSSEDS---------FRSDLVD----LLSLYKAVDKIGVNR--VGIADTVGCAT 207 (423)
T ss_dssp ----CHHHHHHHHHHHHHHTTTCEEEEEEESG---------GGSCHHH----HHHHHHHHHHHCCSE--EEEEETTSCCC
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEccC---------cCCCHHH----HHHHHHHHHHhCCCc--cccCCccCcCC
Confidence 34456666778889999999999998875221 2234443 466777888889874 677765 3
Q ss_pred hhHHHHHHHHHHHH
Q 004907 269 PVVMVQAYRLLVAE 282 (724)
Q Consensus 269 v~~~v~Ayrlla~~ 282 (724)
|..+-+-.+.|.++
T Consensus 208 P~~v~~lv~~l~~~ 221 (423)
T 3ivs_A 208 PRQVYDLIRTLRGV 221 (423)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 44444444445444
No 208
>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*
Probab=37.75 E-value=1.4e+02 Score=29.45 Aligned_cols=129 Identities=17% Similarity=0.201 Sum_probs=77.1
Q ss_pred eccCCCCCCHHHHHHHHHHHHH---------------HHHHHHHHhhhcCCCcceeecCCCC--HHH----HHHHhhh-c
Q 004907 108 TMTTNDTKDVAGTVEEVMRIAD---------------ACFEIKNSLVQKNYNIPLVADIHFA--PSV----ALRVAEC-F 165 (724)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~---------------a~~~I~~~L~~~~~~iPLVADIHF~--~~l----Al~a~~~-v 165 (724)
|+..-|..|.+..++-+.++.. .. .+.+.|++. ..+++.|.||. |.- +..++++ +
T Consensus 7 lilalD~~~l~~~~~~v~~~~~~v~~~Kv~~d~~~~~G~-~~v~~lr~~--~~~v~lD~kl~Dip~t~~~~~~~~~~~Ga 83 (246)
T 2yyu_A 7 FIVALDFPSKQEVERFLRPFAGTPLFVKVGMELYYQEGP-AIVAFLKEQ--GHAVFLDLKLHDIPNTVKQAMKGLARVGA 83 (246)
T ss_dssp EEEECCCSSHHHHHHHHGGGTTSCCEEEECHHHHHHHTH-HHHHHHHHT--TCEEEEEEEECSCHHHHHHHHHHHHHTTC
T ss_pred eEEEeCCCCHHHHHHHHHHhcccccEEEeCHHHHHHhCH-HHHHHHHHC--CCeEEEEeecccchHHHHHHHHHHHhcCC
Confidence 5556677788877777766653 11 233334443 46888999997 433 2244455 7
Q ss_pred CccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHh---cC--CcEEEeecc-CCCchHHH-hhcCCCc
Q 004907 166 DKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK---YG--RAVRIGTNH-GSLSDRIM-SYYGDSP 238 (724)
Q Consensus 166 dkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake---~g--~~IRIGvN~-GSL~~~il-~~yg~t~ 238 (724)
|-|=++|- .|. . -+.++++.+++ +| .+-=|+||- =|++..-+ +.+|-+
T Consensus 84 d~vTvH~~-~g~-~----------------------~l~~~~~~~~~~~~~G~~~~~~lav~~~Ts~~~~~l~~~~~~~- 138 (246)
T 2yyu_A 84 DLVNVHAA-GGR-R----------------------MMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWIS- 138 (246)
T ss_dssp SEEEEEGG-GCH-H----------------------HHHHHHHHHHHHSCSSSCCCEEEEESSCTTCCHHHHHHTSCCC-
T ss_pred CEEEEECC-CCH-H----------------------HHHHHHHHHHhhcccCCcCCCEEEEEeCCCCCHHHHHHHhcCC-
Confidence 77777762 121 1 24677888888 77 343578884 35555666 777521
Q ss_pred hHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 239 RGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 239 ~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
..+++..+...+...+.|+.-++.|.
T Consensus 139 ~~~~d~Vl~ma~~~~~~G~~g~V~~~ 164 (246)
T 2yyu_A 139 RPLVETVAHYAALAKESGLDGVVCSA 164 (246)
T ss_dssp SCHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEeCH
Confidence 12345555555556778988876554
No 209
>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3
Probab=37.68 E-value=12 Score=36.86 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=64.2
Q ss_pred eccCCCCCCHHHHHHHHHHHHH--------HH----HHHHHHhhhcCCCcceeecCCCC--HHHHH----HHhhh-cCcc
Q 004907 108 TMTTNDTKDVAGTVEEVMRIAD--------AC----FEIKNSLVQKNYNIPLVADIHFA--PSVAL----RVAEC-FDKI 168 (724)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~--------a~----~~I~~~L~~~~~~iPLVADIHF~--~~lAl----~a~~~-vdki 168 (724)
-||..|..|.+.+.+=+.++.+ .+ ..+.+.|.++ ..++++|.+|. ++-.. .++++ +|-+
T Consensus 12 ~~~~~D~~~~~~a~~i~~~~~~~~~~Kvg~~l~~~G~~~v~~l~~~--~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~v 89 (213)
T 1vqt_A 12 HMTPVLSLDMEDPIRFIDENGSFEVVKVGHNLAIHGKKIFDELAKR--NLKIILDLKFCDIPSTVERSIKSWDHPAIIGF 89 (213)
T ss_dssp CCEEEEECCSSSHHHHHHHHCCCSEEEECHHHHTTCTHHHHHHHTT--TCEEEEEEEECSCHHHHHHHHHHHCCTTEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCCEEEECHHHHhhCHHHHHHHHHC--CCCEEEEeecccCchHHHHHHHHHHHCCCCEE
Confidence 4677676666666555555543 11 1233444443 68999999984 44332 44455 7777
Q ss_pred ccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccC-CCchHHHhhcCCCchHHHHHHHH
Q 004907 169 RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHG-SLSDRIMSYYGDSPRGMVESAFE 247 (724)
Q Consensus 169 RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~G-SL~~~il~~yg~t~~amVeSAle 247 (724)
=++| +.|. + .++++++.++ +.-+||.-= |++.. ++ +...+
T Consensus 90 Tvh~-~~G~-~----------------------~l~~~~~~~~----~~~~~V~~lts~~~~-l~----------~~v~~ 130 (213)
T 1vqt_A 90 TVHS-CAGY-E----------------------SVERALSATD----KHVFVVVKLTSMEGS-LE----------DYMDR 130 (213)
T ss_dssp EEEG-GGCH-H----------------------HHHHHHHHCS----SEEEEECCCTTSCCC-HH----------HHHHH
T ss_pred EEec-cCCH-H----------------------HHHHHHHhcC----CCeEEEEEeCCCCHH-HH----------HHHHH
Confidence 7776 3332 1 2445555544 556676321 34333 22 56666
Q ss_pred HHHHHHHCCCCcEEEE
Q 004907 248 FARICRKLDFHNFLFS 263 (724)
Q Consensus 248 ~~~i~e~~~F~diviS 263 (724)
.+++ .+.|++ +|.|
T Consensus 131 ~a~~-~e~G~d-vV~~ 144 (213)
T 1vqt_A 131 IEKL-NKLGCD-FVLP 144 (213)
T ss_dssp HHHH-HHHTCE-EECC
T ss_pred HHHH-hcCCCE-EEEc
Confidence 7778 889998 6543
No 210
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=36.93 E-value=3e+02 Score=26.66 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=38.3
Q ss_pred HHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEe
Q 004907 192 YQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 265 (724)
Q Consensus 192 y~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K 265 (724)
+.+.++++.+.++++.+.|++ |+|++ |+..-+ -.++.+.-+..+++++.|-.++.+-+=
T Consensus 143 ~~~~~~~~~~~l~~l~~~a~~----v~l~lEn~~~~~-----------~~~~~~~~~~~~l~~~~~~~~vgl~~D 202 (290)
T 2zvr_A 143 YEETEELFIESMKRLLELTEH----AKFVIEPLNRYE-----------TDFINTIDDALRILRKINSNRVGILAD 202 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS----CCEEECCCCTTT-----------CSSCCSHHHHHHHHHHHCCTTEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHhcc----CEEEEEeCCCcC-----------ccccCCHHHHHHHHHHcCCCCEEEEEe
Confidence 445667788888889888877 77887 433110 011223445667788888888888873
No 211
>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A
Probab=36.41 E-value=2e+02 Score=29.57 Aligned_cols=86 Identities=7% Similarity=-0.038 Sum_probs=61.2
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
.++++|+=+|.| + ++ +.|+++++.|++.|.+-|-=-+.. .-++.++.|.++ .+.|+
T Consensus 188 ~~~~l~vDan~~-~----------~~----~~a~~~~~~l~~~~i~~iE~P~~~----~~~~~~~~l~~~-----~~iPI 243 (359)
T 1mdl_A 188 DDFGIMVDYNQS-L----------DV----PAAIKRSQALQQEGVTWIEEPTLQ----HDYEGHQRIQSK-----LNVPV 243 (359)
T ss_dssp SSSEEEEECTTC-S----------CH----HHHHHHHHHHHHHTCSCEECCSCT----TCHHHHHHHHHT-----CSSCE
T ss_pred CCCEEEEECCCC-C----------CH----HHHHHHHHHHHHhCCCeEECCCCh----hhHHHHHHHHHh-----CCCCE
Confidence 368999988843 2 22 568889999999887655433322 346777888877 67776
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC
Q 004907 293 HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE 331 (724)
Q Consensus 293 HLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~ 331 (724)
- -++.+.|.-.+-.+|.+|--|-|.+-++-
T Consensus 244 ~---------~de~~~~~~~~~~~i~~~~~d~v~ik~~~ 273 (359)
T 1mdl_A 244 Q---------MGENWLGPEEMFKALSIGACRLAMPDAMK 273 (359)
T ss_dssp E---------ECTTCCSHHHHHHHHHTTCCSEECCBTTT
T ss_pred E---------eCCCCCCHHHHHHHHHcCCCCEEeecchh
Confidence 4 34567778888999999999998776654
No 212
>2ozt_A TLR1174 protein; structural genomics, O-succinylbenzoate synthase, PSI, protein structure initiative; 1.42A {Synechococcus elongatus} PDB: 3h7v_A
Probab=35.74 E-value=68 Score=33.11 Aligned_cols=56 Identities=9% Similarity=0.047 Sum_probs=42.2
Q ss_pred CCCcceeecCCC-CHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhc--CCc
Q 004907 142 NYNIPLVADIHF-APSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKY--GRA 216 (724)
Q Consensus 142 ~~~iPLVADIHF-~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~--g~~ 216 (724)
.+++||.+|=.+ +..-...+++. ++-+.|.|..+|+ +.++.+.|+++ |++
T Consensus 213 ~~~ipIa~dEs~~~~~~~~~~~~~~a~~~i~ik~~~~GG-------------------------i~~i~~~A~~~~~gi~ 267 (332)
T 2ozt_A 213 TVTTAIALDESVVSAAEVQRWVDRGWPGFFVIKTALFGD-------------------------PDSLSLLLRRGLEPQR 267 (332)
T ss_dssp HCSSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHHSC-------------------------HHHHHHHHHTTCCGGG
T ss_pred hCCCCEEeCCCCCCHHHHHHHHHhCCCCEEEEChhhhCC-------------------------HHHHHHHHHHhCCCCc
Confidence 578999999764 45555566653 7778999998876 33578899999 999
Q ss_pred EEEeec
Q 004907 217 VRIGTN 222 (724)
Q Consensus 217 IRIGvN 222 (724)
+=+|-.
T Consensus 268 ~~~~~~ 273 (332)
T 2ozt_A 268 LVFSSA 273 (332)
T ss_dssp EEEBCC
T ss_pred EEEeCC
Confidence 988743
No 213
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=35.73 E-value=1.3e+02 Score=28.66 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred CeEEeeccCCCCCCHHHHHHHHHHH---------------------------HHHHHHHHHHhhhcCCCcceee----cC
Q 004907 103 PIRVQTMTTNDTKDVAGTVEEVMRI---------------------------ADACFEIKNSLVQKNYNIPLVA----DI 151 (724)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~~L---------------------------~~a~~~I~~~L~~~~~~iPLVA----DI 151 (724)
++.+||++-.+. +.+.+++.+.++ .+.++++++.|.+.+..+..++ ..
T Consensus 11 klg~~~~~~~~~-~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~ 89 (262)
T 3p6l_A 11 RLGMQSYSFHLF-PLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYVAEK 89 (262)
T ss_dssp EEEEEGGGGTTS-CHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEECCSS
T ss_pred EEEEEecccCCC-CHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccCCcc
Q ss_pred CCCHHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 152 HFAPSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 152 HF~~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
--+.+.+++.++. +..|++.|| .+.++++.+.|+++|+.+
T Consensus 90 ~~~~~~~i~~A~~lGa~~v~~~~~--------------------------~~~~~~l~~~a~~~gv~l 131 (262)
T 3p6l_A 90 SSDWEKMFKFAKAMDLEFITCEPA--------------------------LSDWDLVEKLSKQYNIKI 131 (262)
T ss_dssp TTHHHHHHHHHHHTTCSEEEECCC--------------------------GGGHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHcCCCEEEecCC--------------------------HHHHHHHHHHHHHhCCEE
No 214
>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}
Probab=35.27 E-value=51 Score=34.53 Aligned_cols=76 Identities=21% Similarity=0.225 Sum_probs=52.8
Q ss_pred HHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHH
Q 004907 131 CFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEK 209 (724)
Q Consensus 131 ~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ 209 (724)
+..+.++|...|+.+-|--| =++.....|.+. ++.|=+--|.|++- |+.++.++||++|.+ -.+.
T Consensus 144 L~~~i~~L~~~GIrVSLFID--pd~~qI~aA~~~GAd~IELhTG~YA~a--------~~~~~~~~el~rl~~----aA~~ 209 (278)
T 3gk0_A 144 VRAACKQLADAGVRVSLFID--PDEAQIRAAHETGAPVIELHTGRYADA--------HDAAEQQREFERIAT----GVDA 209 (278)
T ss_dssp HHHHHHHHHHTTCEEEEEEC--SCHHHHHHHHHHTCSEEEECCHHHHTC--------SSHHHHHHHHHHHHH----HHHH
T ss_pred HHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEecchhhcc--------CCchhHHHHHHHHHH----HHHH
Confidence 33444456667998888887 344554455665 99999999988762 334556778877766 6788
Q ss_pred HHhcCCcEEEeeccC
Q 004907 210 CKKYGRAVRIGTNHG 224 (724)
Q Consensus 210 ake~g~~IRIGvN~G 224 (724)
|.+.|. |||.|
T Consensus 210 A~~lGL----~VnAG 220 (278)
T 3gk0_A 210 GIALGL----KVNAG 220 (278)
T ss_dssp HHHTTC----EEEEC
T ss_pred HHHcCC----EEecC
Confidence 889886 67776
No 215
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=35.01 E-value=82 Score=32.64 Aligned_cols=98 Identities=16% Similarity=0.189 Sum_probs=59.3
Q ss_pred HhhhhhhhHHHHHHHHHhcCC-cEEEeeccCCCchHHH--------hhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEe
Q 004907 195 ELQHIEEVFSPLVEKCKKYGR-AVRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRKLDFHNFLFSMK 265 (724)
Q Consensus 195 ele~I~e~~~~vv~~ake~g~-~IRIGvN~GSL~~~il--------~~yg~t~~amVeSAle~~~i~e~~~F~diviS~K 265 (724)
|++.+.+.|..-.+.|++.|. .|-|=..||-|-..++ .+||.+.+.=.+-++|-++-.++.= ++.|++|
T Consensus 138 eI~~~i~~~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v--~~pv~vr 215 (338)
T 1z41_A 138 KVKETVQEFKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW--DGPLFVR 215 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC--CSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc--CCcEEEE
Confidence 566677777777888888775 4555556665533333 3477655544555566666554432 5678888
Q ss_pred cCCh-----hHHHHHHHHHHHHhhcCCCCcccccc
Q 004907 266 ASNP-----VVMVQAYRLLVAEMYVHGWDYPLHLG 295 (724)
Q Consensus 266 aSnv-----~~~v~Ayrlla~~m~~~g~dYPLHLG 295 (724)
-|-. -...+-+..+++++++.|.|| ||+.
T Consensus 216 is~~~~~~~g~~~~~~~~~a~~l~~~Gvd~-i~v~ 249 (338)
T 1z41_A 216 VSASDYTDKGLDIADHIGFAKWMKEQGVDL-IDCS 249 (338)
T ss_dssp EECCCCSTTSCCHHHHHHHHHHHHHTTCCE-EEEE
T ss_pred ecCcccCCCCCCHHHHHHHHHHHHHcCCCE-EEEe
Confidence 5431 112344556777778889988 6764
No 216
>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A
Probab=34.99 E-value=1.8e+02 Score=30.26 Aligned_cols=98 Identities=12% Similarity=0.079 Sum_probs=66.6
Q ss_pred CCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccc
Q 004907 214 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLH 293 (724)
Q Consensus 214 g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLH 293 (724)
++++|+=+|.| + ++ +.|+++++.|++.|..-|-=-+.. .-++.++.|.++ .+.|+=
T Consensus 191 d~~l~vDan~~-~----------~~----~~a~~~~~~l~~~~i~~iEqP~~~----~d~~~~~~l~~~-----~~iPI~ 246 (371)
T 2ovl_A 191 SFPLMVDANMK-W----------TV----DGAIRAARALAPFDLHWIEEPTIP----DDLVGNARIVRE-----SGHTIA 246 (371)
T ss_dssp TSCEEEECTTC-S----------CH----HHHHHHHHHHGGGCCSEEECCSCT----TCHHHHHHHHHH-----HCSCEE
T ss_pred CCeEEEECCCC-C----------CH----HHHHHHHHHHHhcCCCEEECCCCc----ccHHHHHHHHhh-----CCCCEE
Confidence 68999988843 2 22 568899999999988655433322 236778888887 567763
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHh
Q 004907 294 LGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANL 346 (724)
Q Consensus 294 LGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~ 346 (724)
-++.+.|.-.+-.+|.+|--|-|.+-++-- -=+.-+.+++++
T Consensus 247 ---------~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~--GGi~~~~~i~~~ 288 (371)
T 2ovl_A 247 ---------GGENLHTLYDFHNAVRAGSLTLPEPDVSNI--GGYTTFRKVAAL 288 (371)
T ss_dssp ---------ECTTCCSHHHHHHHHHHTCCSEECCCTTTT--TSHHHHHHHHHH
T ss_pred ---------eCCCCCCHHHHHHHHHcCCCCEEeeCcccc--CCHHHHHHHHHH
Confidence 345677888899999999999988766542 113334455443
No 217
>1xfc_A Alanine racemase; alpha-beta barrel, beta-structure for C-terminal domain, INT aldimine form, isomerase; HET: PLP; 1.90A {Mycobacterium tuberculosis}
Probab=34.57 E-value=41 Score=35.06 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCC--cEEEeeccCCCchHHHhhcCCCc---hHHHHHHHHHHHHHHHCCCCcEEE--------EEecCC-
Q 004907 203 FSPLVEKCKKYGR--AVRIGTNHGSLSDRIMSYYGDSP---RGMVESAFEFARICRKLDFHNFLF--------SMKASN- 268 (724)
Q Consensus 203 ~~~vv~~ake~g~--~IRIGvN~GSL~~~il~~yg~t~---~amVeSAle~~~i~e~~~F~divi--------S~KaSn- 268 (724)
++.+-+.|++.|. +|.|=||.| |.|+|-.+ +. +.+.++.+.++. ++.+ |--..+
T Consensus 114 l~~l~~~a~~~~~~~~V~l~vdtG------~~R~G~~~~~~~~----~~~~~~~i~~~~--~l~l~Gl~tH~~~~~~~~~ 181 (384)
T 1xfc_A 114 LDELLHAVRRTGRTATVTVKVDTG------LNRNGVGPAQFPA----MLTALRQAMAED--AVRLRGLMSHMVYADKPDD 181 (384)
T ss_dssp HHHHHHHHHHHCCCEEEEEEBCSS------CCSSSBCTTTHHH----HHHHHHHHHHTT--SEEEEEEECCC-----CCS
T ss_pred HHHHHHHHHhcCCceEEEEEEECC------CCccCCCcCcHHH----HHHHHHHHHhCC--CCcEEEEEecCCCcCCCCc
Confidence 4445556766665 466668988 47899555 43 334444444432 1211 111112
Q ss_pred --hhHHHHHHHHHHHHhhcCCCCcc-cccc
Q 004907 269 --PVVMVQAYRLLVAEMYVHGWDYP-LHLG 295 (724)
Q Consensus 269 --v~~~v~Ayrlla~~m~~~g~dYP-LHLG 295 (724)
.....+.++.+++++.+.|++.| +|+|
T Consensus 182 ~~~~~~~~~~~~~~~~l~~~g~~~~~l~~g 211 (384)
T 1xfc_A 182 SINDVQAQRFTAFLAQAREQGVRFEVAHLS 211 (384)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCSEEECB
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCeEEEe
Confidence 22345566666777767777655 6765
No 218
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=34.55 E-value=1.3e+02 Score=30.54 Aligned_cols=101 Identities=15% Similarity=0.211 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCcc----ccCCCCCcchh------hhhhcc
Q 004907 116 DVAGTVEEVMRIADACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKI----RVNPGNFADRR------AQFEQL 185 (724)
Q Consensus 116 Dv~atv~Qi~~L~~a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdki----RINPGNig~~~------k~f~~~ 185 (724)
|++.|+..+.+ |+..|++ +.+++-.|-.|+-=...-++..++++.+... |-=||-+-... ++|.++
T Consensus 42 dL~kT~~~L~~---A~~~i~~-~~~~~~~iLfVgTk~~~~~~V~~~A~~~g~~yv~~rWlgG~LTN~~ti~~~i~~~~~l 117 (231)
T 3bbn_B 42 NLTRTARFLSE---ACDLVFD-ASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDL 117 (231)
T ss_dssp CHHHHHHHTHH---HHHHSHH-HHTTTCCEEEECCCTTTHHHHHHHHHHHTCEECCSSCCSCSSSCHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHH---HHHHHHH-HHhCCCEEEEEeCcHHHHHHHHHHHHHhCCccccccccCCCCcCHHHHHHHHHHHHHH
Confidence 88999988877 6666665 3566788999998777766666666643332 55689886643 234432
Q ss_pred c----------cchHH---HHHHhhhhhhhH---------------------HHHHHHHHhcCCcEEEee
Q 004907 186 E----------YTDDE---YQKELQHIEEVF---------------------SPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 186 ~----------Ytdee---y~~ele~I~e~~---------------------~~vv~~ake~g~~IRIGv 221 (724)
+ ||-.| ...|+++++..+ ...|..|+..|||+ ||+
T Consensus 118 ~~~~~~g~~~~l~Kke~~~~~r~~~kl~k~lgGik~m~~~Pdll~v~Dp~~e~~ai~EA~~l~IPv-Iai 186 (231)
T 3bbn_B 118 RMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPT-ICL 186 (231)
T ss_dssp HHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTSTTSCCSCCSEEEESCTTTTHHHHHHHHTTTCCE-EEC
T ss_pred HHHHhcCccccCCHHHHHHHHHHHHHHHHhhhcccccccCCCEEEEeCCccccHHHHHHHHhCCCE-EEE
Confidence 1 33222 456677776554 45788999999998 774
No 219
>3cyj_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, isomerase, PSI-2; 2.30A {Rubrobacter xylanophilus dsm 9941}
Probab=34.25 E-value=90 Score=32.56 Aligned_cols=58 Identities=9% Similarity=0.005 Sum_probs=42.2
Q ss_pred CCC--cceeecCCCCHH-HHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 142 NYN--IPLVADIHFAPS-VALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 142 ~~~--iPLVADIHF~~~-lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
.++ +||++|=.+.-. -+..+..+++-|.|.|..+|.-. ...++++.|+++|+++=
T Consensus 238 ~~~~~ipIa~dE~~~~~~~~~~~~~a~d~i~ik~~~~GGit----------------------~~~~i~~~A~~~gi~~~ 295 (372)
T 3cyj_A 238 RGPGGVAIAAGEYEWTLPQLHDLAGCVDILQADVTRCGGIT----------------------GLLRVDGICRGHQIPFS 295 (372)
T ss_dssp HSCTTCEEEECTTCCSHHHHHHHHTTCSEEEECTTTTTHHH----------------------HHTTHHHHHHHHTCCEE
T ss_pred hCCCCCCEECCCCccCHHHHHHHhCCCCEEecCchhhCCHH----------------------HHHHHHHHHHHcCCeec
Confidence 355 799999776432 22233345999999999998743 24568999999999986
Q ss_pred Eee
Q 004907 219 IGT 221 (724)
Q Consensus 219 IGv 221 (724)
+|.
T Consensus 296 ~~~ 298 (372)
T 3cyj_A 296 AHC 298 (372)
T ss_dssp ECS
T ss_pred ccc
Confidence 664
No 220
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=34.22 E-value=71 Score=34.62 Aligned_cols=101 Identities=17% Similarity=0.305 Sum_probs=61.9
Q ss_pred HHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCchHHH--------hhcCCCc-hHHHHHHHHHHHHHHHC-C---CCc
Q 004907 194 KELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIM--------SYYGDSP-RGMVESAFEFARICRKL-D---FHN 259 (724)
Q Consensus 194 ~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il--------~~yg~t~-~amVeSAle~~~i~e~~-~---F~d 259 (724)
+|++.|.+.|..-.+.|++.|-- |=|=.-||-|=..++ .+||.+. +.=..-++|-++-.++. | =.+
T Consensus 163 ~eI~~ii~~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~ 242 (419)
T 3l5a_A 163 EKINSIIQQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDN 242 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCC
Confidence 46677777888888888888765 333334555544333 4577665 55445555555544332 1 246
Q ss_pred EEEEEecCCh-------hHHHHHHHHHHHHhhc-CCCCcccccc
Q 004907 260 FLFSMKASNP-------VVMVQAYRLLVAEMYV-HGWDYPLHLG 295 (724)
Q Consensus 260 iviS~KaSnv-------~~~v~Ayrlla~~m~~-~g~dYPLHLG 295 (724)
+.|++|-|-. -.+.+-+..|++++.+ .|.|| ||+-
T Consensus 243 f~v~vRis~~~~~~~~~G~~~ed~~~la~~L~~~~Gvd~-I~vs 285 (419)
T 3l5a_A 243 FILGFRATPEETRGSDLGYTIDEFNQLIDWVMDVSNIQY-LAIA 285 (419)
T ss_dssp CEEEEEECSCEEETTEEEECHHHHHHHHHHHHHHSCCCC-EEEC
T ss_pred eeEEEecccccccCCCCCCCHHHHHHHHHHHHhhcCCcE-EEEe
Confidence 6888887731 1234556677888888 89999 7764
No 221
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=34.15 E-value=23 Score=36.45 Aligned_cols=56 Identities=20% Similarity=0.360 Sum_probs=43.7
Q ss_pred cCC-CchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccccccccc
Q 004907 234 YGD-SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEA 299 (724)
Q Consensus 234 yg~-t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEA 299 (724)
||. +.+.+.+-+++.++.|++.|.+-|+|-| |... ..|+..|.++ ++.|+ +||-|+
T Consensus 63 YG~ks~e~i~~~~~~~~~~L~~~g~d~IVIAC---NTa~-~~al~~lr~~-----~~iPv-igiiep 119 (274)
T 3uhf_A 63 YGVKDKDTIIKFCLEALDFFEQFQIDMLIIAC---NTAS-AYALDALRAK-----AHFPV-YGVIDA 119 (274)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTSCCSEEEECC---HHHH-HHSHHHHHHH-----CSSCE-ECSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeC---CChh-HHHHHHHHHh-----cCCCE-EcCCHH
Confidence 663 5788999999999999999999999988 6442 2347888888 78887 676554
No 222
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=34.11 E-value=44 Score=32.11 Aligned_cols=88 Identities=16% Similarity=0.092 Sum_probs=0.0
Q ss_pred CeEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCcceeecCCC----CHHHHHHH
Q 004907 103 PIRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVADIHF----APSVALRV 161 (724)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~iPLVADIHF----~~~lAl~a 161 (724)
++.+|+.+-.+ .|.+.+++.+.++-= .++++++.|.+.+..+..+.-.-+ ..+.+++.
T Consensus 19 klg~~~~~~~~-~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~i~~ 97 (257)
T 3lmz_A 19 HLGMAGYTFVN-FDLDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYMKSEEEIDRAFDY 97 (257)
T ss_dssp EEEECGGGGTT-SCHHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEECSHHHHHHHHHH
T ss_pred EEEEEEEeecC-CCHHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEeccccCCHHHHHHHHHH
Q ss_pred hhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 162 AEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 162 ~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
++. +..|++.|| .+.++++.+.|+++|+.+
T Consensus 98 A~~lGa~~v~~~p~--------------------------~~~l~~l~~~a~~~gv~l 129 (257)
T 3lmz_A 98 AKRVGVKLIVGVPN--------------------------YELLPYVDKKVKEYDFHY 129 (257)
T ss_dssp HHHHTCSEEEEEEC--------------------------GGGHHHHHHHHHHHTCEE
T ss_pred HHHhCCCEEEecCC--------------------------HHHHHHHHHHHHHcCCEE
No 223
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=34.08 E-value=33 Score=35.89 Aligned_cols=99 Identities=18% Similarity=0.262 Sum_probs=62.0
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCchHHH--------hhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRKLDFHNFLFS 263 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il--------~~yg~t~~amVeSAle~~~i~e~~~F~diviS 263 (724)
.+|+++|.+.|..-.+.|++.|.- |=|=.-||-|-..+| .+||.+.+.-..-++|-++-.++.= ++.|+
T Consensus 136 ~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v--~~pv~ 213 (340)
T 3gr7_A 136 KADIEETVQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW--DGPLF 213 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC--CSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc--CCceE
Confidence 346777888888888888888754 444444555544443 3577666655555666666554432 55678
Q ss_pred EecCChh-----HHHHHHHHHHHHhhcCCCCccccc
Q 004907 264 MKASNPV-----VMVQAYRLLVAEMYVHGWDYPLHL 294 (724)
Q Consensus 264 ~KaSnv~-----~~v~Ayrlla~~m~~~g~dYPLHL 294 (724)
+|-|-.. ...+-+..+++++++.|.|| ||+
T Consensus 214 vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~-i~v 248 (340)
T 3gr7_A 214 VRISASDYHPDGLTAKDYVPYAKRMKEQGVDL-VDV 248 (340)
T ss_dssp EEEESCCCSTTSCCGGGHHHHHHHHHHTTCCE-EEE
T ss_pred EEeccccccCCCCCHHHHHHHHHHHHHcCCCE-EEE
Confidence 8877210 12344556777888889997 666
No 224
>3vc5_A Mandelate racemase/muconate lactonizing protein; dehydratase, magnesium binding, enzyme function initiative, enolase, isomerase; 1.50A {Thermobispora bispora} PDB: 3vc6_A 4dhg_A
Probab=34.04 E-value=46 Score=36.20 Aligned_cols=60 Identities=10% Similarity=0.230 Sum_probs=44.2
Q ss_pred hcCCCcceeecCCCC-HHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 140 QKNYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 140 ~~~~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
++.+++||.+|=+.. ..-+..+++ ++|-+.+.|...|.-. ...++...|+.+|++
T Consensus 277 ~~~~~iPIa~dE~~~~~~~~~~~l~~~a~dii~~d~~~~GGit----------------------ea~kia~lA~~~gv~ 334 (441)
T 3vc5_A 277 AAEVPMPLATNMCVVTPEHLPAAVERRPIGVLLIDHHYWGGLV----------------------RSAHIATLCATFGIE 334 (441)
T ss_dssp HTTSSSCEEESSSCCSGGGHHHHHHHCCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCE
T ss_pred HhcCCCCEEeCCCCCCHHHHHHHHHhCCCCEEeechhhcCCHH----------------------HHHHHHHHHHHcCCE
Confidence 346899999997643 444445554 4999999999998733 257799999999998
Q ss_pred EEEee
Q 004907 217 VRIGT 221 (724)
Q Consensus 217 IRIGv 221 (724)
+=++.
T Consensus 335 v~~h~ 339 (441)
T 3vc5_A 335 LSMHS 339 (441)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 75544
No 225
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*
Probab=33.82 E-value=83 Score=31.76 Aligned_cols=57 Identities=28% Similarity=0.403 Sum_probs=45.1
Q ss_pred CeEEeeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cC
Q 004907 103 PIRVQTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FD 166 (724)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vd 166 (724)
||++|-. ..|.+++++|-++|.+ +++.+++ |.++| |++=+=.=|...-|+.|+++ +.
T Consensus 56 ~Vs~EV~----a~d~e~mi~eA~~L~~~~~nv~IKIP~T~eGl~A~~~-L~~~G--I~vn~TlifS~~QA~~Aa~AGa~ 127 (223)
T 3s1x_A 56 PVSVEVV----STKYEGMVEEARKIHGLGDNAVVKIPMTEDGLRAIKT-LSSEH--INTNCTLVFNPIQALLAAKAGVT 127 (223)
T ss_dssp CEEEECC----CCSHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHH-HHHTT--CCEEEEEECSHHHHHHHHHTTCS
T ss_pred CEEEEEc----cCCHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHH-HHHCC--CcEEEEEeCCHHHHHHHHHcCCe
Confidence 9999965 4899999999999999 6677765 55555 45555666999999999987 54
No 226
>3va8_A Probable dehydratase; enolase, magnesium binding site, lyase; 2.00A {Gibberella zeae}
Probab=33.73 E-value=51 Score=35.89 Aligned_cols=61 Identities=16% Similarity=0.210 Sum_probs=45.1
Q ss_pred hhcCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC
Q 004907 139 VQKNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR 215 (724)
Q Consensus 139 ~~~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~ 215 (724)
+++.+++||.+|=+. +..-+..+++ ++|-+.+.|...|.-. ...++...|+.+|+
T Consensus 279 l~~~~~iPIa~dE~~~~~~~~~~~i~~~a~div~~d~~~~GGit----------------------ea~kia~lA~~~gv 336 (445)
T 3va8_A 279 VAKEASMPLATNMAVVAFDHLPPSILQDAVQVILSDHHFWGGLR----------------------KSQTLASICATWGL 336 (445)
T ss_dssp HHTTCSSCEEESSSCCSGGGHHHHHHTTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHHTC
T ss_pred HHHcCCCCEEeCCccCCHHHHHHHHHcCCCCEEEecchhcCCHH----------------------HHHHHHHHHHHcCC
Confidence 345689999999664 3444445555 4999999999998733 25779999999999
Q ss_pred cEEEee
Q 004907 216 AVRIGT 221 (724)
Q Consensus 216 ~IRIGv 221 (724)
++=++.
T Consensus 337 ~v~~h~ 342 (445)
T 3va8_A 337 RLSMHS 342 (445)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 875544
No 227
>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*
Probab=33.70 E-value=72 Score=30.62 Aligned_cols=84 Identities=17% Similarity=0.122 Sum_probs=52.3
Q ss_pred eccCCCCCCHHHHHHHHHHHHH---------------HHHHHHHHhhhcCC-CcceeecCCCC--H-HHHHHHhhh-cCc
Q 004907 108 TMTTNDTKDVAGTVEEVMRIAD---------------ACFEIKNSLVQKNY-NIPLVADIHFA--P-SVALRVAEC-FDK 167 (724)
Q Consensus 108 SMt~t~T~Dv~atv~Qi~~L~~---------------a~~~I~~~L~~~~~-~iPLVADIHF~--~-~lAl~a~~~-vdk 167 (724)
|+..-|..|.+..++.+.++.+ .. .+.+.|++. + +.|++.|.|+. | ..+..++++ +|-
T Consensus 6 ~ilalD~~~~~~~~~~~~~~~~~v~~~kv~~~~f~~~G~-~~i~~l~~~-~p~~~v~lD~kl~dip~t~~~~~~~~Gad~ 83 (216)
T 1q6o_A 6 LQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGV-RAVRDLKAL-YPHKIVLADAKIADAGKILSRMCFEANADW 83 (216)
T ss_dssp EEEEECCSSHHHHHHHHHHHGGGCSEEEECHHHHHHHCT-HHHHHHHHH-CTTSEEEEEEEECSCHHHHHHHHHHTTCSE
T ss_pred eEEEECCCCHHHHHHHHHHhcccCCEEEECHHHHHHhCH-HHHHHHHHh-CCCCeEEEEEEecccHHHHHHHHHhCCCCE
Confidence 4555677788888777777654 11 222333333 3 47889999995 3 334455566 787
Q ss_pred cccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 168 IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 168 iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
|=+++.- |. . .++++++.++++|...
T Consensus 84 itvh~~~-g~-~----------------------~l~~~~~~~~~~g~~~ 109 (216)
T 1q6o_A 84 VTVICCA-DI-N----------------------TAKGALDVAKEFNGDV 109 (216)
T ss_dssp EEEETTS-CH-H----------------------HHHHHHHHHHHTTCEE
T ss_pred EEEeccC-CH-H----------------------HHHHHHHHHHHcCCCc
Confidence 7777642 11 1 2567889999998775
No 228
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=33.50 E-value=95 Score=34.76 Aligned_cols=99 Identities=13% Similarity=0.072 Sum_probs=57.8
Q ss_pred HHHHHHHHhc---CCc--EEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCC----------
Q 004907 204 SPLVEKCKKY---GRA--VRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN---------- 268 (724)
Q Consensus 204 ~~vv~~ake~---g~~--IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSn---------- 268 (724)
.++|++.++. +.| +||..+... .-|.+.+ .+.++++.+++.|.+-|.+|.-...
T Consensus 195 ~eiv~avr~~vG~~~~v~vrls~~~~~-------~~g~~~~----~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~ 263 (671)
T 1ps9_A 195 VEVVRAVRERVGNDFIIIYRLSMLDLV-------EDGGTFA----ETVELAQAIEAAGATIINTGIGWHEARIPTIATPV 263 (671)
T ss_dssp HHHHHHHHHHHCSSSEEEEEEEEECCS-------TTCCCHH----HHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTS
T ss_pred HHHHHHHHHHcCCCceEEEEECccccC-------CCCCCHH----HHHHHHHHHHhcCCCEEEcCCCccccccccccccC
Confidence 3444444432 445 599876321 1144443 5778899999999998888742111
Q ss_pred -hhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhHHHHHHHhhcCCCceeEE
Q 004907 269 -PVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRV 327 (724)
Q Consensus 269 -v~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRV 327 (724)
....+...+.+.+. ++-|+ .-.|.|.+.--.-.+|.+|--|-|-+
T Consensus 264 ~~~~~~~~~~~i~~~-----~~iPv---------i~~Ggi~~~~~a~~~l~~g~aD~V~~ 309 (671)
T 1ps9_A 264 PRGAFSWVTRKLKGH-----VSLPL---------VTTNRINDPQVADDILSRGDADMVSM 309 (671)
T ss_dssp CTTTTHHHHHHHTTS-----CSSCE---------EECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred CcchHHHHHHHHHHh-----cCceE---------EEeCCCCCHHHHHHHHHcCCCCEEEe
Confidence 01112333333333 56665 22477878777888899987787654
No 229
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=33.36 E-value=20 Score=31.37 Aligned_cols=12 Identities=58% Similarity=1.223 Sum_probs=9.5
Q ss_pred ecCCCCcccccc
Q 004907 626 VSCPSCGRTLFD 637 (724)
Q Consensus 626 ISCPsCGRTlfD 637 (724)
-.||.||+++-+
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 359999998664
No 230
>3ekg_A Mandelate racemase/muconate lactonizing enzyme; structural genomics, nysgrc, L-rhamnonate dehydratase,target PSI-2; HET: TLA; 1.60A {Azotobacter vinelandii avop} PDB: 2oz3_A*
Probab=33.31 E-value=87 Score=33.75 Aligned_cols=64 Identities=14% Similarity=0.078 Sum_probs=43.5
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCCH-HHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHH
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFAP-SVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPL 206 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~~-~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~v 206 (724)
++..++++ -..+||+.+|=++.- .-+...++ ++|-|+|.|...|.-. ...++
T Consensus 252 ~~a~l~~~---~~~pi~Ia~gE~~~~~~~~~~li~~~a~dii~~d~~~~GGit----------------------ea~ki 306 (404)
T 3ekg_A 252 GYAELRRN---APTGMMVTTGEHEATRWGFRMLLEMGCCDIIQPDVGWCGGVT----------------------ELLKI 306 (404)
T ss_dssp HHHHHHHH---SCTTCEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTTTHHH----------------------HHHHH
T ss_pred HHHHHHHh---cCCCeEEEecCccCCHHHHHHHHHcCCCCeEecChhhcCCcc----------------------HHHHH
Confidence 45556552 123345888977643 22334444 4999999999998743 35779
Q ss_pred HHHHHhcCCcEE
Q 004907 207 VEKCKKYGRAVR 218 (724)
Q Consensus 207 v~~ake~g~~IR 218 (724)
...|+.+|+++=
T Consensus 307 a~lA~a~gv~v~ 318 (404)
T 3ekg_A 307 SALADAHNALVV 318 (404)
T ss_dssp HHHHHHTTCEEC
T ss_pred HHHHHHcCCEEE
Confidence 999999999884
No 231
>1jpd_X L-Ala-D/L-Glu epimerase; enolase superfamily, muconate lactonizing enzyme subgroup, alpha/beta barrel, structural genomics, isomerase; 2.60A {Escherichia coli} SCOP: c.1.11.2 d.54.1.1
Probab=33.28 E-value=33 Score=35.27 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=45.4
Q ss_pred CCCcceeecCCC-CHHHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 142 NYNIPLVADIHF-APSVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 142 ~~~iPLVADIHF-~~~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
.+++||.+|=.+ +..-...+++.++-+.|.|..+|+-. ...+++..|+++|+++=+|
T Consensus 220 ~~~ipIa~dE~~~~~~~~~~~~~~~~~i~ik~~~~GGit----------------------~~~~i~~~A~~~g~~~~~~ 277 (324)
T 1jpd_X 220 IHPLPICADESCHTRSNLKALKGRYEMVNIKLDKTGGLT----------------------EALALATEARAQGFSLMLG 277 (324)
T ss_dssp CCSSCEEESTTCSSGGGHHHHBTTBSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCEEEEC
T ss_pred cCCCCEEEcCCCCCHHHHHHHHhhCCEEEEcchhhCcHH----------------------HHHHHHHHHHHcCCcEEEe
Confidence 468999999764 45555566666888999999988743 2577999999999999776
Q ss_pred ec
Q 004907 221 TN 222 (724)
Q Consensus 221 vN 222 (724)
..
T Consensus 278 ~~ 279 (324)
T 1jpd_X 278 CM 279 (324)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 232
>2p3z_A L-rhamnonate dehydratase; enolase, structural genomics, PSI, protein structure initiat YORK structural genomics research consortium; 1.80A {Salmonella typhimurium LT2} PDB: 3box_A 3cxo_A* 2gsh_A 3d47_A 3d46_A 2i5q_A
Probab=33.25 E-value=45 Score=35.89 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=45.2
Q ss_pred HHHHHHHHhhhcCCC--cceeecCCC-CHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHH
Q 004907 130 ACFEIKNSLVQKNYN--IPLVADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSP 205 (724)
Q Consensus 130 a~~~I~~~L~~~~~~--iPLVADIHF-~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~ 205 (724)
++..+++ .++ +||++|=++ +..-+..+++. ++-|.|.|..+|.-. ...+
T Consensus 264 ~~~~l~~-----~~~~~ipIa~dE~~~~~~~~~~~i~~~~d~i~ik~~~~GGit----------------------ea~~ 316 (415)
T 2p3z_A 264 GYRELKR-----NAPAGMMVTSGEHHGTLQSFRTLAETGIDIMQPDVGWCGGLT----------------------TLVE 316 (415)
T ss_dssp HHHHHHH-----HSCTTCEEEECTTCCSHHHHHHHHHTTCSEECCCHHHHTCHH----------------------HHHH
T ss_pred HHHHHHH-----hcCCCCcEEcCCCCCCHHHHHHHHHcCCCEEEeCccccCCHH----------------------HHHH
Confidence 4555555 345 899999775 44444455444 999999999998743 2577
Q ss_pred HHHHHHhcCCcEEE
Q 004907 206 LVEKCKKYGRAVRI 219 (724)
Q Consensus 206 vv~~ake~g~~IRI 219 (724)
+++.|+++|+++=+
T Consensus 317 ia~lA~~~gi~v~~ 330 (415)
T 2p3z_A 317 IAALAKSRGQLVVP 330 (415)
T ss_dssp HHHHHHHTTCCBCC
T ss_pred HHHHHHHcCCEEEe
Confidence 99999999998744
No 233
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=33.19 E-value=1.2e+02 Score=30.03 Aligned_cols=118 Identities=16% Similarity=0.179 Sum_probs=66.7
Q ss_pred CCCCCHHHHHHHHHHHHH---------------HHHHHHHHhhhcCCCcceeecCCCC--HHH----HHHHhhh-cCccc
Q 004907 112 NDTKDVAGTVEEVMRIAD---------------ACFEIKNSLVQKNYNIPLVADIHFA--PSV----ALRVAEC-FDKIR 169 (724)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~---------------a~~~I~~~L~~~~~~iPLVADIHF~--~~l----Al~a~~~-vdkiR 169 (724)
-|..|.+..++-+.++.. .. .+.+.|.+. ...++++|.||. ++- +..+++. +|-+=
T Consensus 19 lD~~~~~~a~~~v~~~~~~v~~~Kvg~~lf~~~G~-~~v~~l~~~-~g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vt 96 (228)
T 3m47_A 19 MDLMNRDDALRVTGEVREYIDTVKIGYPLVLSEGM-DIIAEFRKR-FGCRIIADFKVADIPETNEKICRATFKAGADAII 96 (228)
T ss_dssp CCCCSHHHHHHHHHTTTTTCSEEEEEHHHHHHHCT-HHHHHHHHH-HCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEE
T ss_pred eCCCCHHHHHHHHHHcCCcccEEEEcHHHHHhcCH-HHHHHHHhc-CCCeEEEEEeecccHhHHHHHHHHHHhCCCCEEE
Confidence 566777777776666653 11 222333331 346899999998 543 2234444 67776
Q ss_pred cCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHH
Q 004907 170 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFA 249 (724)
Q Consensus 170 INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~ 249 (724)
++|- +.. +.++++++.++++|..+= -++.-|=+. ..+.+ -+-+.+.+
T Consensus 97 vh~~--~G~----------------------~~l~~~~~~~~~~g~~v~-vLt~~s~~~-~~~~~-------~~~~~~~a 143 (228)
T 3m47_A 97 VHGF--PGA----------------------DSVRACLNVAEEMGREVF-LLTEMSHPG-AEMFI-------QGAADEIA 143 (228)
T ss_dssp EEST--TCH----------------------HHHHHHHHHHHHHTCEEE-EECCCCSGG-GGTTH-------HHHHHHHH
T ss_pred Eecc--CCH----------------------HHHHHHHHHHHhcCCCeE-EEEeCCCcc-HHHHH-------HHHHHHHH
Confidence 7662 221 136778888888876321 112222111 11111 13456677
Q ss_pred HHHHHCCCCcEEEEE
Q 004907 250 RICRKLDFHNFLFSM 264 (724)
Q Consensus 250 ~i~e~~~F~diviS~ 264 (724)
++..+.|++-+|.|.
T Consensus 144 ~~a~~~G~~GvV~~a 158 (228)
T 3m47_A 144 RMGVDLGVKNYVGPS 158 (228)
T ss_dssp HHHHHTTCCEEECCS
T ss_pred HHHHHhCCcEEEECC
Confidence 888999999888775
No 234
>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A
Probab=33.13 E-value=3e+02 Score=28.17 Aligned_cols=86 Identities=15% Similarity=0.272 Sum_probs=60.8
Q ss_pred hcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEEecCChhHHHHHHHHHHHHhhcCCCC
Q 004907 212 KYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH--NFLFSMKASNPVVMVQAYRLLVAEMYVHGWD 289 (724)
Q Consensus 212 e~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~--diviS~KaSnv~~~v~Ayrlla~~m~~~g~d 289 (724)
-.++++||-.|.| + + ++.|+++++.|++.|.. -|-==+. ..-++.++.|.++ .+
T Consensus 180 g~~~~l~vDan~~-~----------~----~~~a~~~~~~l~~~~i~~~~iE~P~~----~~~~~~~~~l~~~-----~~ 235 (345)
T 2zad_A 180 TRGAKYIVDANMG-Y----------T----QKEAVEFARAVYQKGIDIAVYEQPVR----REDIEGLKFVRFH-----SP 235 (345)
T ss_dssp STTCEEEEECTTC-S----------C----HHHHHHHHHHHHHTTCCCSEEECCSC----TTCHHHHHHHHHH-----SS
T ss_pred CCCCeEEEECCCC-C----------C----HHHHHHHHHHHHhcCCCeeeeeCCCC----cccHHHHHHHHHh-----CC
Confidence 3468899988743 3 2 26688899999998876 4431122 2236788888887 67
Q ss_pred ccccccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecC
Q 004907 290 YPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLT 330 (724)
Q Consensus 290 YPLHLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT 330 (724)
.|+=. ++.+.+.-.+-.++.+|--|-|.+-++
T Consensus 236 ipia~---------dE~~~~~~~~~~~i~~~~~d~v~ik~~ 267 (345)
T 2zad_A 236 FPVAA---------DESARTKFDVMRLVKEEAVDYVNIKLM 267 (345)
T ss_dssp SCEEE---------STTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred CCEEE---------eCCcCCHHHHHHHHHhCCCCEEEEecc
Confidence 77644 345678888899999999999988554
No 235
>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}
Probab=33.13 E-value=80 Score=33.80 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhc-CC-cEEEeecc
Q 004907 202 VFSPLVEKCKKY-GR-AVRIGTNH 223 (724)
Q Consensus 202 ~~~~vv~~ake~-g~-~IRIGvN~ 223 (724)
.+.++++.+++. ++ .|||++|.
T Consensus 180 ~L~~il~~l~~~~~v~~i~i~Tng 203 (416)
T 2a5h_A 180 TLEYIIAKLREIPHVEIVRIGSRT 203 (416)
T ss_dssp HHHHHHHHHHTSTTCCEEEEECSH
T ss_pred HHHHHHHHHHhcCCccEEEEEecc
Confidence 366788888876 34 68999886
No 236
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=33.11 E-value=86 Score=32.41 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=62.2
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCccccC-CCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIRVN-PGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiRIN-PGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
++++.+=. -+.+-...|+++ ++.|||- +-|=....++ +..-.+..-+.+.++|+.||++|..+|..+
T Consensus 74 ~~~~~~l~-~~~~~i~~a~~~g~~~v~i~~~~sd~~~~~~----------l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i 142 (307)
T 1ydo_A 74 GVTYAALV-PNQRGLENALEGGINEACVFMSASETHNRKN----------INKSTSESLHILKQVNNDAQKANLTTRAYL 142 (307)
T ss_dssp TCEEEEEC-CSHHHHHHHHHHTCSEEEEEEESSHHHHHTT----------TCSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCeEEEEe-CCHHhHHHHHhCCcCEEEEEeecCHHHHHHH----------hCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 34444433 255555566776 8888863 1110000000 111233444557779999999999998654
Q ss_pred ccCCCchHHHhhc-CC-CchHHHHHHHHHHHHHHHCCCCcEEEEEec----CChhHHHHHHHHHHHH
Q 004907 222 NHGSLSDRIMSYY-GD-SPRGMVESAFEFARICRKLDFHNFLFSMKA----SNPVVMVQAYRLLVAE 282 (724)
Q Consensus 222 N~GSL~~~il~~y-g~-t~~amVeSAle~~~i~e~~~F~diviS~Ka----Snv~~~v~Ayrlla~~ 282 (724)
-. +.+.. | |. ++ +-.++.++.+.+.|-+. |+++- .+|..+-+-.+.+.+.
T Consensus 143 ~~-~~~~~----~~~~~~~----~~~~~~~~~~~~~Ga~~--i~l~DT~G~~~P~~v~~lv~~l~~~ 198 (307)
T 1ydo_A 143 ST-VFGCP----YEKDVPI----EQVIRLSEALFEFGISE--LSLGDTIGAANPAQVETVLEALLAR 198 (307)
T ss_dssp EC-TTCBT----TTBCCCH----HHHHHHHHHHHHHTCSC--EEEECSSCCCCHHHHHHHHHHHHTT
T ss_pred EE-EecCC----cCCCCCH----HHHHHHHHHHHhcCCCE--EEEcCCCCCcCHHHHHHHHHHHHHh
Confidence 22 11111 1 22 33 45667778888889885 45553 4555555555555444
No 237
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=33.07 E-value=1e+02 Score=33.17 Aligned_cols=74 Identities=9% Similarity=0.168 Sum_probs=48.8
Q ss_pred HHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHHH
Q 004907 206 LVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVA 281 (724)
Q Consensus 206 vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaSnv~~~v~Ayrlla~ 281 (724)
.++..++.|+ -||-+.-=|++++++++.+... =.+.+++-++.+.+.||.+|.+.+ ---+...+.+..+.+.+
T Consensus 155 ~l~~L~~~G~-~rislGvQS~~~~~l~~i~R~~--~~~~~~~ai~~~r~~G~~~v~~dlI~GlPget~e~~~~tl~~~~~ 231 (457)
T 1olt_A 155 VLDHLRAEGF-NRLSMGVQDFNKEVQRLVNREQ--DEEFIFALLNHAREIGFTSTNIDLIYGLPKQTPESFAFTLKRVAE 231 (457)
T ss_dssp HHHHHHHTTC-CEEEEEEECCCHHHHHHHTCCC--CHHHHHHHHHHHHHTTCCSCEEEEEESCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-CEEEEeeccCCHHHHHHhCCCC--CHHHHHHHHHHHHHcCCCcEEEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 5677777885 5666655678899999987321 135666777788889998666655 33445556666665554
Q ss_pred H
Q 004907 282 E 282 (724)
Q Consensus 282 ~ 282 (724)
.
T Consensus 232 l 232 (457)
T 1olt_A 232 L 232 (457)
T ss_dssp H
T ss_pred c
Confidence 3
No 238
>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4
Probab=32.92 E-value=1.3e+02 Score=29.67 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=17.3
Q ss_pred CCeEEeeccCCCCCCHHHHHHHHHH
Q 004907 102 HPIRVQTMTTNDTKDVAGTVEEVMR 126 (724)
Q Consensus 102 ~PI~VQSMt~t~T~Dv~atv~Qi~~ 126 (724)
.++.++|++-.+..+.+..++++.+
T Consensus 23 ~klgi~~~~~~~~~~~~~~l~~a~~ 47 (296)
T 2g0w_A 23 CPITISSYTLGTEVSFPKRVKVAAE 47 (296)
T ss_dssp CCEEECGGGGTTTSCHHHHHHHHHH
T ss_pred CCceeechhcCCCCCHHHHHHHHHH
Confidence 4678888887766677766665544
No 239
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=32.78 E-value=66 Score=30.99 Aligned_cols=81 Identities=15% Similarity=0.152 Sum_probs=50.1
Q ss_pred CCCCCHHHHHHHHHHHHH---------------HHHHHHHHhhhcCCCcceeecCCCCH---HHHHHHhhh-cCccccCC
Q 004907 112 NDTKDVAGTVEEVMRIAD---------------ACFEIKNSLVQKNYNIPLVADIHFAP---SVALRVAEC-FDKIRVNP 172 (724)
Q Consensus 112 t~T~Dv~atv~Qi~~L~~---------------a~~~I~~~L~~~~~~iPLVADIHF~~---~lAl~a~~~-vdkiRINP 172 (724)
-|..|.+.+++.+.++.. +.+.| ++|++...+.|++.|.|+.. ..+..++++ +|-|=+-.
T Consensus 13 lD~~~~~~~~~~~~~~~~~vd~ie~g~~~~~~~G~~~i-~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~ 91 (218)
T 3jr2_A 13 LDQTNLTDAVAVASNVASYVDVIEVGTILAFAEGMKAV-STLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSA 91 (218)
T ss_dssp ECCSSHHHHHHHHHHHGGGCSEEEECHHHHHHHTTHHH-HHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEET
T ss_pred eCCCCHHHHHHHHHHhcCCceEEEeCcHHHHhcCHHHH-HHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEec
Confidence 477889999999888754 22223 33444434689999999853 234455665 66554321
Q ss_pred CCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 173 GNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 173 GNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
-. + ++.+.++++.||++|+..
T Consensus 92 ~~-~-----------------------~~~~~~~~~~~~~~g~~~ 112 (218)
T 3jr2_A 92 AA-H-----------------------IATIAACKKVADELNGEI 112 (218)
T ss_dssp TS-C-----------------------HHHHHHHHHHHHHHTCEE
T ss_pred CC-C-----------------------HHHHHHHHHHHHHhCCcc
Confidence 11 1 113567889999998765
No 240
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=32.40 E-value=98 Score=32.30 Aligned_cols=101 Identities=15% Similarity=0.230 Sum_probs=65.2
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCchHHH--------hhcCCCchHHHHHHHHHHHHHHH-CCCCcEEE
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRK-LDFHNFLF 262 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il--------~~yg~t~~amVeSAle~~~i~e~-~~F~divi 262 (724)
.+|+++|.+.|..-.+.|++.|.- |-|=.-||-|-..++ .+||.+.+.-..-++|-++-+++ .| .++.|
T Consensus 144 ~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG-~d~pV 222 (349)
T 3hgj_A 144 EAGMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVP-RELPL 222 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSC-TTSCE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhc-CCceE
Confidence 346777888888888999998753 555556776644444 35776666656666777765554 44 35567
Q ss_pred EEecCCh-----hHHHHHHHHHHHHhhcCCCCcccccc
Q 004907 263 SMKASNP-----VVMVQAYRLLVAEMYVHGWDYPLHLG 295 (724)
Q Consensus 263 S~KaSnv-----~~~v~Ayrlla~~m~~~g~dYPLHLG 295 (724)
++|-|-. -...+-+..+++++++.|.|| ||+.
T Consensus 223 ~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~-i~vs 259 (349)
T 3hgj_A 223 FVRVSATDWGEGGWSLEDTLAFARRLKELGVDL-LDCS 259 (349)
T ss_dssp EEEEESCCCSTTSCCHHHHHHHHHHHHHTTCCE-EEEE
T ss_pred EEEeccccccCCCCCHHHHHHHHHHHHHcCCCE-EEEe
Confidence 7777621 012234556778888889998 6653
No 241
>2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP}
Probab=32.03 E-value=1.7e+02 Score=30.74 Aligned_cols=84 Identities=13% Similarity=0.143 Sum_probs=60.0
Q ss_pred CCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccc
Q 004907 214 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLH 293 (724)
Q Consensus 214 g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLH 293 (724)
+++|||=.|.| . ++ +.|+++++.|++.|.+-|-=-+... -++.++.|.++ .+.|+=
T Consensus 189 d~~l~vDan~~-~----------~~----~~a~~~~~~l~~~~i~~iEqP~~~~----~~~~~~~l~~~-----~~iPIa 244 (397)
T 2qde_A 189 DVDLFIDINGA-W----------TY----DQALTTIRALEKYNLSKIEQPLPAW----DLDGMARLRGK-----VATPIY 244 (397)
T ss_dssp TSCEEEECTTC-C----------CH----HHHHHHHHHHGGGCCSCEECCSCTT----CHHHHHHHHTT-----CSSCEE
T ss_pred CCEEEEECCCC-C----------CH----HHHHHHHHHHHhCCCCEEECCCChh----hHHHHHHHHhh-----CCCCEE
Confidence 68999999843 3 22 5688899999999887554333322 36777778776 667763
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecC
Q 004907 294 LGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLT 330 (724)
Q Consensus 294 LGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT 330 (724)
. ++.+.|.-.+-.++.+|--|-|.+-++
T Consensus 245 ~---------dE~~~~~~~~~~~i~~~~~d~v~ik~~ 272 (397)
T 2qde_A 245 A---------DESAQELHDLLAIINKGAADGLMIKTQ 272 (397)
T ss_dssp E---------STTCCSHHHHHHHHHHTCCSEEEECHH
T ss_pred E---------eCCcCCHHHHHHHHHcCCCCEEEEecc
Confidence 2 455667788899999999999887554
No 242
>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*
Probab=31.90 E-value=3.9e+02 Score=28.09 Aligned_cols=54 Identities=13% Similarity=0.122 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHH-------------------HHHHHHHHhhhcCCCccee-ecCCC--CHHHHHHHhhhcCcccc
Q 004907 114 TKDVAGTVEEVMRIAD-------------------ACFEIKNSLVQKNYNIPLV-ADIHF--APSVALRVAECFDKIRV 170 (724)
Q Consensus 114 T~Dv~atv~Qi~~L~~-------------------a~~~I~~~L~~~~~~iPLV-ADIHF--~~~lAl~a~~~vdkiRI 170 (724)
..+.+..++++.++.+ -++.|++. -+.+++|. .|.|- ++.-|+..++.++...|
T Consensus 140 ~~~~e~~~~~a~~~~~~G~~~~KiKvG~~~~~d~~~v~avR~a---~g~~~~l~~vDan~~~~~~~A~~~~~~l~~~~i 215 (391)
T 3gd6_A 140 SEEVESNLDVVRQKLEQGFDVFRLYVGKNLDADEEFLSRVKEE---FGSRVRIKSYDFSHLLNWKDAHRAIKRLTKYDL 215 (391)
T ss_dssp TTHHHHHHHHHHHHHHTTCCEEEEECSSCHHHHHHHHHHHHHH---HGGGCEEEEEECTTCSCHHHHHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeCCCHHHHHHHHHHHHHH---cCCCCcEEEecCCCCcCHHHHHHHHHHHHhcCC
Confidence 3467888888887765 22333332 25679999 99985 45555555666776554
No 243
>2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample}
Probab=31.68 E-value=2.7e+02 Score=29.18 Aligned_cols=86 Identities=3% Similarity=0.021 Sum_probs=62.3
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
.+++|+|=+|.| + + ++.|+++++.|++.|.+-|-=-+.. .-++.++.|.++ .+.|+
T Consensus 193 ~d~~l~vDan~~-~----------~----~~~a~~~~~~l~~~~i~~iEqP~~~----~d~~~~~~l~~~-----~~iPI 248 (391)
T 2qgy_A 193 DELPLMLDLAVP-E----------D----LDQTKSFLKEVSSFNPYWIEEPVDG----ENISLLTEIKNT-----FNMKV 248 (391)
T ss_dssp SSSCEEEECCCC-S----------C----HHHHHHHHHHHGGGCCSEEECSSCT----TCHHHHHHHHHH-----CSSCE
T ss_pred CCCEEEEEcCCC-C----------C----HHHHHHHHHHHHhcCCCeEeCCCCh----hhHHHHHHHHhh-----CCCCE
Confidence 368999988843 2 2 2678899999999888654422322 347788888887 67776
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC
Q 004907 293 HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE 331 (724)
Q Consensus 293 HLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~ 331 (724)
-. ++.+.|.-.+-.++.+|--|-|.+-++-
T Consensus 249 a~---------dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 278 (391)
T 2qgy_A 249 VT---------GEKQSGLVHFRELISRNAADIFNPDISG 278 (391)
T ss_dssp EE---------CTTCCSHHHHHHHHHTTCCSEECCBTTT
T ss_pred EE---------cCCcCCHHHHHHHHHcCCCCEEEECcch
Confidence 43 4667778889999999999999886654
No 244
>3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site, lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A*
Probab=31.22 E-value=50 Score=35.99 Aligned_cols=58 Identities=9% Similarity=0.166 Sum_probs=43.1
Q ss_pred CCCcceeecCCCC-HHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 142 NYNIPLVADIHFA-PSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 142 ~~~iPLVADIHF~-~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
.+++||.+|=+.. ..-+..+++ ++|-+.+.|...|.-. ...++...|+++|+++=
T Consensus 284 ~~~iPIa~dE~~~~~~~~~~~l~~~a~div~~d~~~~GGit----------------------ea~kia~lA~~~gv~v~ 341 (445)
T 3vdg_A 284 QAPMPLATNMCVVAFDQLPAAVAKNSVQVVLSDHHYWGGLQ----------------------RSRLLAGICDTFGLGLS 341 (445)
T ss_dssp HCSSCEEESSSCCSGGGHHHHHHHTCCSEEEECHHHHTSHH----------------------HHHHHHHHHHHHTCEEE
T ss_pred cCCCCEEcCCcCCCHHHHHHHHHcCCCCEEeeCcceeCCHH----------------------HHHHHHHHHHHcCCEEE
Confidence 5889999997643 444445554 4999999999998733 25779999999999874
Q ss_pred Eee
Q 004907 219 IGT 221 (724)
Q Consensus 219 IGv 221 (724)
++.
T Consensus 342 ~h~ 344 (445)
T 3vdg_A 342 MHS 344 (445)
T ss_dssp ECC
T ss_pred EeC
Confidence 443
No 245
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=31.18 E-value=11 Score=38.60 Aligned_cols=126 Identities=19% Similarity=0.293 Sum_probs=76.5
Q ss_pred cCCCCCeEEeeccC--CCCCCHHHHHHHHHHHHH---------HHHH-HHHHhhhcCCCcceee----------------
Q 004907 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIAD---------ACFE-IKNSLVQKNYNIPLVA---------------- 149 (724)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~~L~~---------a~~~-I~~~L~~~~~~iPLVA---------------- 149 (724)
|||+. +.|++|.. .+..+.+.|-.++.+|.+ .++. ..++|.+...++++|.
T Consensus 19 I~Gd~-v~V~~lv~~g~dPH~yeptp~d~~~l~~Adlvv~~G~~lE~~~~~~l~~~~~~~~~v~~~~~i~~~~~~~~~~~ 97 (291)
T 1pq4_A 19 IGGDL-VRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGFEQPWLEKLKAANANMKLIDSAQGITPLEMEKHDHS 97 (291)
T ss_dssp HHGGG-EEEEESSCTTSCGGGCCCCHHHHHHGGGCSEEEECCTTTTTTTHHHHHHHCSSSEEEETTTTCCCCBSCC----
T ss_pred HcCCe-EEEEEecCCCCCCccccCCHHHHHHHHcCCEEEEeCCcchhHHHHHHHhhCCCCeEEEccCCcccccccccccc
Confidence 56654 88999964 567889999999999999 3331 2222322222222221
Q ss_pred ---------------------------------c--CCCCHHHHHHHhhh-cCc-cccCCCCCcchhhhhhccccchHHH
Q 004907 150 ---------------------------------D--IHFAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEY 192 (724)
Q Consensus 150 ---------------------------------D--IHF~~~lAl~a~~~-vdk-iRINPGNig~~~k~f~~~~Ytdeey 192 (724)
| +-++|..|...++. .+. .++.|.|=..=+++ -+.|
T Consensus 98 ~~~~~~~~~~~~~~h~~~~~~~~~~h~~~~~~~DPH~Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N-------~~~~ 170 (291)
T 1pq4_A 98 HGEEEGHDDHSHDGHDHGSESEKEKAKGALMVADPHIWLSPTLVKRQATTIAKELAELDPDNRDQYEAN-------LAAF 170 (291)
T ss_dssp ------------------------------CCBCCCGGGCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH-------HHHH
T ss_pred ccccccccccccccccccccccccccccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHCcccHHHHHHH-------HHHH
Confidence 1 22346666655554 333 24788774221111 4569
Q ss_pred HHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC
Q 004907 193 QKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD 236 (724)
Q Consensus 193 ~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~ 236 (724)
.++|+.+++.++..+..++ +.+ +=|.|.++ ..+.++||-
T Consensus 171 ~~~L~~Ld~~~~~~l~~~~--~~~--~v~~H~af-~Yf~~~yGl 209 (291)
T 1pq4_A 171 LAELERLNQELGQILQPLP--QRK--FIVFHPSW-AYFARDYNL 209 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCS--CCE--EEESSCCC-HHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhCCC--CCE--EEEECCch-HHHHHHCCC
Confidence 9999999998888887664 333 46777776 556777773
No 246
>2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti}
Probab=31.05 E-value=2.1e+02 Score=29.99 Aligned_cols=86 Identities=13% Similarity=0.179 Sum_probs=61.1
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
.+++|+|=+|.| + + ++.|+++++.|++.|..-|-=-+.. .-++.++.|.++ .+.|+
T Consensus 198 ~d~~l~vD~n~~-~----------~----~~~a~~~~~~l~~~~i~~iE~P~~~----~~~~~~~~l~~~-----~~ipI 253 (392)
T 2poz_A 198 PEIELMVDLSGG-L----------T----TDETIRFCRKIGELDICFVEEPCDP----FDNGALKVISEQ-----IPLPI 253 (392)
T ss_dssp TTSEEEEECTTC-S----------C----HHHHHHHHHHHGGGCEEEEECCSCT----TCHHHHHHHHHH-----CSSCE
T ss_pred CCCEEEEECCCC-C----------C----HHHHHHHHHHHHhcCCCEEECCCCc----ccHHHHHHHHhh-----CCCCE
Confidence 368898888732 3 2 2568889999999876433322222 347788888888 67776
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC
Q 004907 293 HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE 331 (724)
Q Consensus 293 HLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~ 331 (724)
= -++.+.|.-.+-.++.+|--|-|.+-++-
T Consensus 254 a---------~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 283 (392)
T 2poz_A 254 A---------VGERVYTRFGFRKIFELQACGIIQPDIGT 283 (392)
T ss_dssp E---------ECTTCCHHHHHHHHHTTTCCSEECCCTTT
T ss_pred E---------ecCCcCCHHHHHHHHHcCCCCEEecCccc
Confidence 4 35667788889999999999999886654
No 247
>1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1
Probab=30.83 E-value=3e+02 Score=28.51 Aligned_cols=85 Identities=19% Similarity=0.202 Sum_probs=61.8
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
.+++|++=+|.| + + ++.|+++++.|++.|..-|-=-+.. .-++.++.|.++ .+.|+
T Consensus 199 ~d~~l~vDan~~-~----------~----~~~a~~~~~~l~~~~i~~iE~P~~~----~~~~~~~~l~~~-----~~iPI 254 (382)
T 1rvk_A 199 PDIRLMIDAFHW-Y----------S----RTDALALGRGLEKLGFDWIEEPMDE----QSLSSYKWLSDN-----LDIPV 254 (382)
T ss_dssp TTSEEEEECCTT-C----------C----HHHHHHHHHHHHTTTCSEEECCSCT----TCHHHHHHHHHH-----CSSCE
T ss_pred CCCeEEEECCCC-C----------C----HHHHHHHHHHHHhcCCCEEeCCCCh----hhHHHHHHHHhh-----CCCCE
Confidence 368899888743 3 2 2678899999999988655433332 246778888887 67776
Q ss_pred cccccccCCCCCCchhh-HHHHHHHhhcCCCceeEEecC
Q 004907 293 HLGVTEAGEGEDGRMKS-AIGIGTLLQDGLGDTIRVSLT 330 (724)
Q Consensus 293 HLGVTEAG~~~~G~IKS-aiGiG~LL~~GIGDTIRVSLT 330 (724)
- -++.+.| .-.+-.+|.+|--|-|.+-++
T Consensus 255 a---------~dE~~~~~~~~~~~~i~~~~~d~v~ik~~ 284 (382)
T 1rvk_A 255 V---------GPESAAGKHWHRAEWIKAGACDILRTGVN 284 (382)
T ss_dssp E---------ECSSCSSHHHHHHHHHHTTCCSEEEECHH
T ss_pred E---------EeCCccCcHHHHHHHHHcCCCCEEeeCch
Confidence 3 3566777 788999999999999987554
No 248
>1l6w_A Fructose-6-phosphate aldolase 1; alpha-beta barrel, domain swapping, lyase; 1.93A {Escherichia coli} SCOP: c.1.10.1
Probab=30.53 E-value=95 Score=31.06 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=43.7
Q ss_pred C--eEEeeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh
Q 004907 103 P--IRVQTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 164 (724)
Q Consensus 103 P--I~VQSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~ 164 (724)
| |++|-. ..|.+++++|-++|.+ +++.|++ |.++| |++=+=.=|...-|+.|+++
T Consensus 53 ~~~VS~EV~----a~d~e~mi~eA~~l~~~~~nv~IKIP~T~eGl~A~~~-L~~~G--I~vn~TliFS~~QA~~aa~A 123 (220)
T 1l6w_A 53 QGRLFAQVM----ATTAEGMVNDALKLRSIIADIVVKVPVTAEGLAAIKM-LKAEG--IPTLGTAVYGAAQGLLSALA 123 (220)
T ss_dssp CSEEEEECC----CSSHHHHHHHHHHHHHHSTTCEEEEECSHHHHHHHHH-HHHHT--CCEEEEEECSHHHHHHHHHH
T ss_pred CceEEEEEc----cCCHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHH-HHHCC--CcEEEEEeCCHHHHHHHHHC
Confidence 7 999976 7799999999999999 6677765 55666 45555566888899999886
No 249
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=30.41 E-value=1.1e+02 Score=30.40 Aligned_cols=60 Identities=12% Similarity=0.072 Sum_probs=43.9
Q ss_pred hhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHH
Q 004907 198 HIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYR 277 (724)
Q Consensus 198 ~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayr 277 (724)
.+....+.++.+|+++|++. |+..+ +| +.++.+.++||+-+.++. |...+.++.+
T Consensus 194 ~v~~a~~~iv~aa~a~G~~~--~v~~~------------d~--------~~~~~~~~~G~~~~s~~~---d~~~l~~~~~ 248 (256)
T 1dxe_A 194 DVQKAIQHIFNRASAHGKPS--GILAP------------VE--------ADARRYLEWGATFVAVGS---DLGVFRSATQ 248 (256)
T ss_dssp HHHHHHHHHHHHHHHTTCCE--EEECC------------SH--------HHHHHHHHTTCCEEEEEE---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCce--EEecC------------CH--------HHHHHHHHcCCCEEEech---HHHHHHHHHH
Confidence 34555678999999999997 55222 22 366777899999887775 7777778877
Q ss_pred HHHHH
Q 004907 278 LLVAE 282 (724)
Q Consensus 278 lla~~ 282 (724)
.+.+.
T Consensus 249 ~~~~~ 253 (256)
T 1dxe_A 249 KLADT 253 (256)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 250
>2okt_A OSB synthetase, O-succinylbenzoic acid synthetase; enolase, structural genom protein structure initiative, PSI, nysgrc; 1.30A {Staphylococcus aureus subsp} PDB: 2ola_A 3h70_A
Probab=30.40 E-value=53 Score=33.95 Aligned_cols=59 Identities=15% Similarity=0.153 Sum_probs=45.4
Q ss_pred cCCCcceeecCCC-CHHHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 141 KNYNIPLVADIHF-APSVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 141 ~~~~iPLVADIHF-~~~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
+.+++||.+|=.. +..-+...++ ++|-|.|.|...|+-. ...++...|+++|+++
T Consensus 211 ~~~~ipIa~dEs~~~~~~~~~~i~~~a~d~i~~k~~~~GGit----------------------~~~~ia~~A~~~gi~~ 268 (342)
T 2okt_A 211 DGTIPPIALDEKATSLLDIINLIELYNVKVVVLKPFRLGGID----------------------KVQTAIDTLKSHGAKV 268 (342)
T ss_dssp TTSSCCEEESTTCCCHHHHHHHHHHSCCCEEEECHHHHTSGG----------------------GHHHHHHHHHHTTCEE
T ss_pred hcCCCCEEecCCCCCHHHHHHHHHhCCCCEEEEChhhcCCHH----------------------HHHHHHHHHHHCCCEE
Confidence 4678999999775 4444445554 4999999999998744 3578999999999998
Q ss_pred EEee
Q 004907 218 RIGT 221 (724)
Q Consensus 218 RIGv 221 (724)
=+|.
T Consensus 269 ~~~~ 272 (342)
T 2okt_A 269 VIGG 272 (342)
T ss_dssp EEBC
T ss_pred EEcC
Confidence 7764
No 251
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=29.98 E-value=1.9e+02 Score=29.70 Aligned_cols=71 Identities=10% Similarity=0.105 Sum_probs=45.7
Q ss_pred hhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHH
Q 004907 197 QHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVM 272 (724)
Q Consensus 197 e~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~ 272 (724)
+..-+.+.++|+.||++|..++.+.--++ + .++ +-.++.++.+.+.|-+ .|+++-+ .|..+
T Consensus 117 ~e~l~~~~~~v~~a~~~g~~v~~~~~d~~-------~--~~~----~~~~~~~~~~~~~G~~--~i~l~DT~G~~~P~~v 181 (293)
T 3ewb_X 117 AEVLASIKHHISYARQKFDVVQFSPEDAT-------R--SDR----AFLIEAVQTAIDAGAT--VINIPDTVGYTNPTEF 181 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCSCEEEEEETGG-------G--SCH----HHHHHHHHHHHHTTCC--EEEEECSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeccCC-------C--CCH----HHHHHHHHHHHHcCCC--EEEecCCCCCCCHHHH
Confidence 34445677899999999999987652110 1 233 4556777888899987 4677765 44444
Q ss_pred HHHHHHHHHH
Q 004907 273 VQAYRLLVAE 282 (724)
Q Consensus 273 v~Ayrlla~~ 282 (724)
-+-.+.+.++
T Consensus 182 ~~lv~~l~~~ 191 (293)
T 3ewb_X 182 GQLFQDLRRE 191 (293)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4444555554
No 252
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=29.96 E-value=2.6e+02 Score=27.92 Aligned_cols=105 Identities=6% Similarity=0.046 Sum_probs=0.0
Q ss_pred CeEEeeccCCCCCCHHHHH------HHHHHHHH-----------------------HHHHHHHHhhhcCCC---cceeec
Q 004907 103 PIRVQTMTTNDTKDVAGTV------EEVMRIAD-----------------------ACFEIKNSLVQKNYN---IPLVAD 150 (724)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv------~Qi~~L~~-----------------------a~~~I~~~L~~~~~~---iPLVAD 150 (724)
++.+++++-++..+-...- +.+..+++ .+..+++.|.+.|.. +.-+
T Consensus 10 klg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~l~~~gL~~~~i~~~-- 87 (335)
T 2qw5_A 10 DIYISFFMFTTNLQPDNLDYRRIVVAHIKKLQRFGYSGFEFPIAPGLPENYAQDLENYTNLRHYLDSEGLENVKISTN-- 87 (335)
T ss_dssp CEEEEGGGTCSCCCTTCHHHHHHHHHHHHHHHHTTCCEEEEECCCCCGGGHHHHHHHHHHHHHHHHHTTCTTCEEEEE--
T ss_pred ceeEEEeeecCCCChhhhhccchHHHHHHHHHHhCCCEEEEecCCCcccccccchHHHHHHHHHHHHCCCCcceeEEE--
Q ss_pred CCCC-------------------HHHHHHHhhh--cCccccCCCCCcchhhhhhccccchH-H------------HHHHh
Q 004907 151 IHFA-------------------PSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDD-E------------YQKEL 196 (724)
Q Consensus 151 IHF~-------------------~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytde-e------------y~~el 196 (724)
.||. .+.+++.++. +..| +-|+.-+.+. |++. . ..+.+
T Consensus 88 ~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v-~~~~~~~~g~-------~~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
T 2qw5_A 88 VGATRTFDPSSNYPEQRQEALEYLKSRVDITAALGGEIM-MGPIVIPYGV-------FPTTDFNEPIWSDELQEHLKVRY 159 (335)
T ss_dssp CCCCSSSCTTCSSHHHHHHHHHHHHHHHHHHHHTTCSEE-EECCSSCTTC-------CCBCTTCCBCCHHHHHHHHHHHH
T ss_pred eccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEE-eccccCcccc-------ccCCcccccccccchhhhHHHHH
Q ss_pred hhhhhhHHHHHHHHHhcCCcE
Q 004907 197 QHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 197 e~I~e~~~~vv~~ake~g~~I 217 (724)
+++.+.++++.+.|+++|+.+
T Consensus 160 ~~~~~~l~~l~~~a~~~Gv~l 180 (335)
T 2qw5_A 160 ANAQPILDKLGEYAEIKKVKL 180 (335)
T ss_dssp HHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHHHHHcCCEE
No 253
>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8
Probab=29.56 E-value=2e+02 Score=29.93 Aligned_cols=90 Identities=17% Similarity=0.200 Sum_probs=55.8
Q ss_pred HHHHHHHHHhcCCcE--EEeeccCCCchH-HHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHH
Q 004907 203 FSPLVEKCKKYGRAV--RIGTNHGSLSDR-IMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLL 279 (724)
Q Consensus 203 ~~~vv~~ake~g~~I--RIGvN~GSL~~~-il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrll 279 (724)
+.+.|+++.+.|+|+ -||.+-=|.... =..--|.|. -.+.+++-++.+++.|=+-|++-+-. . +..+.+
T Consensus 138 ~~~~I~al~~agIpV~gHiGLtPqsv~~~ggf~v~grt~--~a~~~i~rA~a~~eAGA~~ivlE~vp----~--~~a~~i 209 (281)
T 1oy0_A 138 VAEQIACLTAAGIPVMAHIGFTPQSVNTLGGFRVQGRGD--AAEQTIADAIAVAEAGAFAVVMEMVP----A--ELATQI 209 (281)
T ss_dssp GHHHHHHHHHHTCCEEEEEECCC--------------CH--HHHHHHHHHHHHHHHTCSEEEEESCC----H--HHHHHH
T ss_pred HHHHHHHHHHCCCCEEeeecCCcceecccCCeEEEeCcH--HHHHHHHHHHHHHHcCCcEEEEecCC----H--HHHHHH
Confidence 455677778889987 578765554321 000123343 45999999999999999999998832 1 345678
Q ss_pred HHHhhcCCCCccccccccccCCCCCCch
Q 004907 280 VAEMYVHGWDYPLHLGVTEAGEGEDGRM 307 (724)
Q Consensus 280 a~~m~~~g~dYPLHLGVTEAG~~~~G~I 307 (724)
+++ ++-|+ +|+ =||..-||-|
T Consensus 210 t~~-----l~iP~-igI-GaG~~~dgQv 230 (281)
T 1oy0_A 210 TGK-----LTIPT-VGI-GAGPNCDGQV 230 (281)
T ss_dssp HHH-----CSSCE-EEE-SSCSCSSEEE
T ss_pred HHh-----CCCCE-EEe-CCCCCCCcce
Confidence 888 67774 332 3666666654
No 254
>2opj_A O-succinylbenzoate-COA synthase; TIM barrel, structural genomics, protein structure initiative; 1.60A {Thermobifida fusca} PDB: 2qvh_A*
Probab=29.30 E-value=40 Score=34.98 Aligned_cols=55 Identities=16% Similarity=0.278 Sum_probs=33.2
Q ss_pred CCCcceeecCCCCH-HHHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 142 NYNIPLVADIHFAP-SVALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 142 ~~~iPLVADIHF~~-~lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
.+++||.+|=...- .-+...++ ++|-|.|.|...|+ +.+..+.|+.+|+++=
T Consensus 171 ~~~iPIa~dEs~~~~~~~~~~i~~~a~d~i~ik~~~~GG-------------------------it~~~~ia~~~gi~~~ 225 (327)
T 2opj_A 171 RVSVPIAADESIRRAEDPLRVRDAEAADVVVLKVQPLGG-------------------------VRAALRLAEECGLPVV 225 (327)
T ss_dssp HCSSCEEC-----------CTTTTTCCSBEEECHHHHTS-------------------------HHHHHHHHHHTCSCEE
T ss_pred hCCCCEEcCCCCCCHHHHHHHHHhCCCCEEEeCccccCC-------------------------HHHHHHHHHHcCCcEE
Confidence 58899999977532 22233333 48999999999987 3445566777898886
Q ss_pred Eee
Q 004907 219 IGT 221 (724)
Q Consensus 219 IGv 221 (724)
+|.
T Consensus 226 ~~~ 228 (327)
T 2opj_A 226 VSS 228 (327)
T ss_dssp EBC
T ss_pred EcC
Confidence 654
No 255
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=29.07 E-value=19 Score=36.87 Aligned_cols=154 Identities=11% Similarity=0.159 Sum_probs=90.1
Q ss_pred cCCCCCeEEeeccC--CCCCCHHHHHHHHHHHHH---------HHHH----HHHHhhhc-CC--Ccceee----------
Q 004907 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIAD---------ACFE----IKNSLVQK-NY--NIPLVA---------- 149 (724)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~~L~~---------a~~~----I~~~L~~~-~~--~iPLVA---------- 149 (724)
|||+ -+.|+||.. .|..+.+.+-.++.+|.+ .++. -.+++.+. +. ++++|.
T Consensus 34 I~Gd-~v~V~~lv~~g~dPH~yeptp~d~~~l~~Adlvv~~G~~lE~~~~~w~~k~~~~~~~~~~~~~v~~s~gi~~~~~ 112 (294)
T 3hh8_A 34 IAGD-KIDLHSIVPIGQDPHEYEPLPEDAEKTSNADVIFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSDGIDVIYL 112 (294)
T ss_dssp HHGG-GEEEEECSCTTSCSSSCCCCHHHHHHHHHCSEEEECCTTSSCSTTSHHHHHHHHTTCCBTTTEEETTTTSCCCBS
T ss_pred HcCC-ceEEEEccCCCCCCccccCCHHHHHHHHhCCEEEEcCCCccchHHHHHHHHHHhccccCCceEEEccCCcccccC
Confidence 4554 588999864 578999999999999999 2332 22222221 11 134432
Q ss_pred ---------cC--CCCHHHHHHHhhh-cCcc-ccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCc
Q 004907 150 ---------DI--HFAPSVALRVAEC-FDKI-RVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRA 216 (724)
Q Consensus 150 ---------DI--HF~~~lAl~a~~~-vdki-RINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~ 216 (724)
|= .+||..|...++. .+.+ ++.|.|=..=++ .-+.|.++|+.+++.++..+..++..+..
T Consensus 113 ~~~~~~~~~dPHvWldp~~~~~~a~~I~~~L~~~dP~~a~~y~~-------N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~ 185 (294)
T 3hh8_A 113 EGASEKGKEDPHAWLNLENGIIYSKNIAKQLIAKDPKNKETYEK-------NLKAYVAKLEKLDKEAKSKFDAIAENKKL 185 (294)
T ss_dssp TTCCSTTCBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHH-------HHHHHHHHHHHHHHHHHHTTTTSCGGGCC
T ss_pred CCccCCCCCCCceeCCHHHHHHHHHHHHHHHHHhCccchHHHHH-------HHHHHHHHHHHHHHHHHHHHhhCCccCcE
Confidence 22 2566777766665 3333 588887422111 14568999999998888777766653344
Q ss_pred EEEeeccCCCchHHHhhcCCCchHH----------HHHHHHHHHHHHHCCCCcEEE
Q 004907 217 VRIGTNHGSLSDRIMSYYGDSPRGM----------VESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 217 IRIGvN~GSL~~~il~~yg~t~~am----------VeSAle~~~i~e~~~F~divi 262 (724)
+ =|.|.++ ..+.++||-+..+. ...-.+.++.+++.+-.-|.+
T Consensus 186 ~--v~~H~af-~Yf~~~yGl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~ 238 (294)
T 3hh8_A 186 I--VTSEGCF-KYFSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFV 238 (294)
T ss_dssp E--EEEESCC-HHHHHHHTCCEEEEESSCCSCCCCHHHHHHHHHHHHHSCCSCEEE
T ss_pred E--EEECChH-HHHHHHcCCceeeccccCCCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3 5678776 55677777321111 112234455666676655444
No 256
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=28.77 E-value=1.1e+02 Score=32.61 Aligned_cols=98 Identities=17% Similarity=0.244 Sum_probs=64.2
Q ss_pred HHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCchHHHh--------hcCCCchHHHHHHHHHHHHHHH-CCCCcEEEE
Q 004907 194 KELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRK-LDFHNFLFS 263 (724)
Q Consensus 194 ~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il~--------~yg~t~~amVeSAle~~~i~e~-~~F~diviS 263 (724)
+|+++|.+.|..-.+.|++.|.- |=|=.-||-|=..+|+ +||.+.+.=..-++|-++-+++ .|= + .|+
T Consensus 146 ~eI~~ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~-~-~v~ 223 (362)
T 4ab4_A 146 EEINDIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGA-Q-RVG 223 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCG-G-GEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCC-C-ceE
Confidence 46777888888888888988863 5555556666554444 4676655555566666665544 342 3 567
Q ss_pred EecCCh--------hHHHHHHHHHHHHhhcCCCCccccc
Q 004907 264 MKASNP--------VVMVQAYRLLVAEMYVHGWDYPLHL 294 (724)
Q Consensus 264 ~KaSnv--------~~~v~Ayrlla~~m~~~g~dYPLHL 294 (724)
+|-|-. ....+-+..|++++++.|.|| ||+
T Consensus 224 vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~-i~v 261 (362)
T 4ab4_A 224 VHLAPRADAHDMGDADRAETFTYVARELGKRGIAF-ICS 261 (362)
T ss_dssp EEECTTCCSSSCCCTTHHHHHHHHHHHHHHTTCSE-EEE
T ss_pred EEeeccccccccCCCCcHHHHHHHHHHHHHhCCCE-EEE
Confidence 776632 124666788899999999998 564
No 257
>3rcy_A Mandelate racemase/muconate lactonizing enzyme-LI protein; structural genomics, protein structure initiative; HET: RIB; 1.99A {Roseovarius SP} PDB: 3t4w_A
Probab=28.61 E-value=3e+02 Score=29.67 Aligned_cols=99 Identities=12% Similarity=0.166 Sum_probs=68.5
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
.+++|++=.|. ++ + ++.|+++++.|++.|..=|-=-+... .++.++.|.++ .+.|+
T Consensus 202 ~d~~L~vDan~-~~----------t----~~~A~~~~~~Le~~~i~~iEeP~~~~----~~~~~~~l~~~-----~~iPI 257 (433)
T 3rcy_A 202 DKADLLFGTHG-QF----------T----TAGAIRLGQAIEPYSPLWYEEPVPPD----NVGAMAQVARA-----VRIPV 257 (433)
T ss_dssp TSSEEEECCCS-CB----------C----HHHHHHHHHHHGGGCCSEEECCSCTT----CHHHHHHHHHH-----SSSCE
T ss_pred CCCeEEEeCCC-CC----------C----HHHHHHHHHHhhhcCCCEEECCCChh----hHHHHHHHHhc-----cCCCE
Confidence 46889998873 23 2 35688999999999876555444433 46788899988 77787
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHh
Q 004907 293 HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANL 346 (724)
Q Consensus 293 HLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~ 346 (724)
=+ ++.+.|.-.+-.++..|--|-|.+-++--- =|.-+++|+++
T Consensus 258 a~---------dE~~~~~~~~~~~l~~g~~D~v~~d~~~~G--Git~~~kia~l 300 (433)
T 3rcy_A 258 AT---------GERLTTKAEFAPVLREGAAAILQPALGRAG--GIWEMKKVAAM 300 (433)
T ss_dssp EE---------CTTCCSHHHHHHHHHTTCCSEECCCHHHHT--HHHHHHHHHHH
T ss_pred Ee---------cCCCCCHHHHHHHHHcCCCCEEEeCchhcC--CHHHHHHHHHH
Confidence 43 456778889999999999999887664311 13334555554
No 258
>1wx0_A Transaldolase; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferas; 2.27A {Thermus thermophilus HB8} SCOP: c.1.10.1
Probab=28.39 E-value=1.1e+02 Score=30.66 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=43.6
Q ss_pred CeEEeeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh
Q 004907 103 PIRVQTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 164 (724)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~ 164 (724)
||++|-. ..|.+++++|-++|.+ +++.+++ |.++|+ ++=+=.=|...-|+.|+++
T Consensus 62 ~VS~EV~----a~d~e~~i~eA~~l~~~~~nv~IKIP~T~eGl~A~~~-L~~~GI--~vN~TliFS~~Qa~~aa~A 130 (223)
T 1wx0_A 62 PVSAEVT----ALEAEAMVAEGRRLAAIHPNIVVKLPTTEEGLKACKR-LSAEGI--KVNMTLIFSANQALLAARA 130 (223)
T ss_dssp CEEEECC----CSSHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHH-HHHTTC--CEEEEEECSHHHHHHHHHT
T ss_pred cEEEEEe----cCCHHHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHHH-HHHCCC--cEEEEEeCCHHHHHHHHHC
Confidence 8999965 7899999999999999 6777765 566664 5555556888899988876
No 259
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=28.39 E-value=34 Score=29.83 Aligned_cols=30 Identities=0% Similarity=-0.077 Sum_probs=18.2
Q ss_pred eeEeeecceeeee---cCChhHHHHHHHHHHHh
Q 004907 684 KIDLYVGKTVVKR---GIAMEQATDALIQLIKD 713 (724)
Q Consensus 684 ki~Ly~gke~V~~---~Ipeeeavd~Li~lIk~ 713 (724)
.+.+.+.++++.+ ..+.+++.+.|.+++++
T Consensus 130 ~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 162 (164)
T 2ggt_A 130 MYLIGPDGEFLDYFGQNKRKGEIAASIATHMRP 162 (164)
T ss_dssp EEEECTTSCEEEEEETTCCHHHHHHHHHHHHGG
T ss_pred EEEECCCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 3434456666665 34567777777777654
No 260
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=28.22 E-value=1.8e+02 Score=31.20 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhc-----CCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHH
Q 004907 202 VFSPLVEKCKKY-----GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVM 272 (724)
Q Consensus 202 ~~~~vv~~ake~-----g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~ 272 (724)
.+.++++.++++ +..|+|.+|-++++++ .++.+.+.|++.|-|++-|.|..+.
T Consensus 122 ~l~~ll~~i~~~~~~~~~~eitie~~p~~l~~e------------------~l~~L~~~G~~rislGvQS~~~~~l 179 (457)
T 1olt_A 122 QISRLMKLLRENFQFNADAEISIEVDPREIELD------------------VLDHLRAEGFNRLSMGVQDFNKEVQ 179 (457)
T ss_dssp HHHHHHHHHHHHSCEEEEEEEEEEECSSSCCTH------------------HHHHHHHTTCCEEEEEEECCCHHHH
T ss_pred HHHHHHHHHHHhCCCCCCcEEEEEEccCcCCHH------------------HHHHHHHcCCCEEEEeeccCCHHHH
Confidence 466677777762 4678999999888654 5666788999999999999886543
No 261
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=28.20 E-value=11 Score=33.08 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=24.6
Q ss_pred ceeeecCCCceeEeeecceeeeecCChhHHHHHHHHHHH
Q 004907 674 DFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIK 712 (724)
Q Consensus 674 D~GyvGg~pGki~Ly~gke~V~~~Ipeeeavd~Li~lIk 712 (724)
.||+.+ .|.-+.+-+.++++.+.++.+++.+.|.++++
T Consensus 104 ~~~v~~-~P~~~lid~~G~i~~~~~~~~~l~~~l~~l~~ 141 (152)
T 2lrn_A 104 SYCIVG-FPHIILVDPEGKIVAKELRGDDLYNTVEKFVN 141 (152)
T ss_dssp HTTCCS-SCEEEEECTTSEEEEECCCTTHHHHHHHHHHT
T ss_pred HhCCCc-CCeEEEECCCCeEEEeeCCHHHHHHHHHHHHh
Confidence 366655 47554333677888877777776666666654
No 262
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=28.15 E-value=15 Score=32.01 Aligned_cols=46 Identities=24% Similarity=0.144 Sum_probs=29.1
Q ss_pred CceeeecCCCceeEeeecceeeeecCChhHHHHHHHHHHHhccccCCC
Q 004907 673 ADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIKDHGRWAEP 720 (724)
Q Consensus 673 AD~GyvGg~pGki~Ly~gke~V~~~Ipeeeavd~Li~lIk~~g~W~dp 720 (724)
..||+.+ .|..+.+.+.++++.+. ....-.++|.+.|+++..+..+
T Consensus 103 ~~~~v~~-~P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~~~~~~~~~ 148 (154)
T 3ia1_A 103 ARFKVLG-QPWTFVVDREGKVVALF-AGRAGREALLDALLLAGADLEG 148 (154)
T ss_dssp TTSSBCS-SCEEEEECTTSEEEEEE-ESBCCHHHHHHHHHHTTCCC--
T ss_pred HHhCCCc-ccEEEEECCCCCEEEEE-cCCCCHHHHHHHHHhccCcccc
Confidence 4577765 58767666777777753 3223355688888888777654
No 263
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily, NYSGXRC, target 9265J, lyase, structural genomics, PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Probab=27.96 E-value=75 Score=34.99 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=40.8
Q ss_pred CcceeecCCCCHH-HHHHHhh--hcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 144 NIPLVADIHFAPS-VALRVAE--CFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 144 ~iPLVADIHF~~~-lAl~a~~--~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
.+||.+|=++.-. -+...++ ++|-|++.|...|.-. ...++...|+.+|+++=
T Consensus 268 ~iPIA~gEs~~s~~d~~~li~~~avDiiq~d~~~~GGIt----------------------ea~kIa~lA~a~Gv~v~ 323 (455)
T 3fxg_A 268 TVKFTTGEHEYSRYGFRKLVEGRNLDIIQPDVMWLGGLT----------------------ELLKVAALAAAYDVPVV 323 (455)
T ss_dssp TSEEEECTTCCHHHHHHHHHTTCCCSEECCCTTTSSCHH----------------------HHHHHHHHHHTTTCCBC
T ss_pred CCeEECCCccCCHHHHHHHHHcCCCCEEEECccccCCHH----------------------HHHHHHHHHHHcCCEEE
Confidence 4899999876533 3345554 4999999999998844 35779999999999983
No 264
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis}
Probab=27.75 E-value=1.9e+02 Score=30.37 Aligned_cols=85 Identities=18% Similarity=0.174 Sum_probs=59.7
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
.+++|+|=+|. ++ + ++.|+++++.|++.|..-|-=-+. ..-++.++.|.++ .+.|+
T Consensus 208 ~d~~l~vDan~-~~----------~----~~~ai~~~~~l~~~~i~~iE~P~~----~~d~~~~~~l~~~-----~~iPI 263 (403)
T 2ox4_A 208 PDVDIIVENHG-HT----------D----LVSAIQFAKAIEEFNIFFYEEINT----PLNPRLLKEAKKK-----IDIPL 263 (403)
T ss_dssp TTSEEEEECTT-CS----------C----HHHHHHHHHHHGGGCEEEEECCSC----TTSTHHHHHHHHT-----CCSCE
T ss_pred CCCeEEEECCC-CC----------C----HHHHHHHHHHHHhhCCCEEeCCCC----hhhHHHHHHHHHh-----CCCCE
Confidence 36889988873 33 2 266888999999987643332222 2346778888887 67776
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecC
Q 004907 293 HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLT 330 (724)
Q Consensus 293 HLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT 330 (724)
= -++.+.|.-.+-.++.+|--|-|.+-++
T Consensus 264 a---------~dE~~~~~~~~~~~i~~~~~d~v~ik~~ 292 (403)
T 2ox4_A 264 A---------SGERIYSRWGFLPFLEDRSIDVIQPDLG 292 (403)
T ss_dssp E---------ECTTCCHHHHHHHHHHTTCCSEECCCHH
T ss_pred E---------ecCCcCCHHHHHHHHHcCCCCEEecCcc
Confidence 3 3466777888999999999998877554
No 265
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=27.60 E-value=83 Score=30.52 Aligned_cols=67 Identities=16% Similarity=0.280 Sum_probs=42.5
Q ss_pred HHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhHH------HHHHHHHHHhccc
Q 004907 644 EIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQA------TDALIQLIKDHGR 716 (724)
Q Consensus 644 ~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipeeea------vd~Li~lIk~~g~ 716 (724)
.+++....++.++++-+-|- | |. .-..|++.+ .| .+.+|++++++.+-+-..+. .+.|.++|.++|-
T Consensus 141 ~l~~la~~~~~v~f~~vd~~-~-~~--l~~~~~i~~-~P-Tl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g~ 213 (217)
T 2trc_P 141 SLECLAAEYPMVKFCKIRAS-N-TG--AGDRFSSDV-LP-TLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGL 213 (217)
T ss_dssp HHHHHHTTCTTSEEEEEEHH-H-HT--CSTTSCGGG-CS-EEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTTC
T ss_pred HHHHHHHHCCCeEEEEEECC-c-HH--HHHHCCCCC-CC-EEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHcCC
Confidence 33444445577888877664 2 11 123588876 47 46688888888764444443 4778888888875
No 266
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=27.48 E-value=3.8e+02 Score=26.58 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHH------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhhcCccccCCCCCcchhhhh
Q 004907 115 KDVAGTVEEVMRIAD------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAECFDKIRVNPGNFADRRAQF 182 (724)
Q Consensus 115 ~Dv~atv~Qi~~L~~------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~vdkiRINPGNig~~~k~f 182 (724)
.+.+..+..++++.+ ....|++ ..++|+| +|....-=-|.|+..+.+. + ++||-=. |
T Consensus 46 ~~le~av~~a~~~~~~~~~dVIISRGgta~~Lr~-----~~~iPVV-~I~vs~~Dil~aL~~a~~~--~-~kIavVg--~ 114 (225)
T 2pju_A 46 LGFEKAVTYIRKKLANERCDAIIAAGSNGAYLKS-----RLSVPVI-LIKPSGYDVLQFLAKAGKL--T-SSIGVVT--Y 114 (225)
T ss_dssp CCHHHHHHHHHHHTTTSCCSEEEEEHHHHHHHHT-----TCSSCEE-EECCCHHHHHHHHHHTTCT--T-SCEEEEE--E
T ss_pred CcHHHHHHHHHHHHhcCCCeEEEeCChHHHHHHh-----hCCCCEE-EecCCHHHHHHHHHHHHhh--C-CcEEEEe--C
Confidence 356778887777543 4445544 5789975 7888766666666654332 1 2332211 2
Q ss_pred hccccchHHHHHHhh--------hhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcC-C----CchHHHHHHHHHH
Q 004907 183 EQLEYTDDEYQKELQ--------HIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYG-D----SPRGMVESAFEFA 249 (724)
Q Consensus 183 ~~~~Ytdeey~~ele--------~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg-~----t~~amVeSAle~~ 249 (724)
.+..+.-+.+.+-+. .=.+...+.++.+|+.|+-+=|| |.+..++.++|| + +.+.=|+.|++.+
T Consensus 115 ~~~~~~~~~i~~ll~~~i~~~~~~~~ee~~~~i~~l~~~G~~vVVG---~~~~~~~A~~~Gl~~vlI~s~eSI~~Ai~eA 191 (225)
T 2pju_A 115 QETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVG---AGLITDLAEEAGMTGIFIYSAATVRQAFSDA 191 (225)
T ss_dssp SSCCHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEE---SHHHHHHHHHTTSEEEESSCHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHhCCceEEEEeCCHHHHHHHHHHHHHCCCCEEEC---CHHHHHHHHHcCCcEEEECCHHHHHHHHHHH
Confidence 222221111222111 01234677999999999998776 677788888887 2 2344455555544
Q ss_pred H
Q 004907 250 R 250 (724)
Q Consensus 250 ~ 250 (724)
.
T Consensus 192 ~ 192 (225)
T 2pju_A 192 L 192 (225)
T ss_dssp H
T ss_pred H
Confidence 4
No 267
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase, aldolase, structural genomics, biology; 1.35A {Unidentified}
Probab=27.37 E-value=4e+02 Score=28.42 Aligned_cols=139 Identities=14% Similarity=0.185 Sum_probs=85.8
Q ss_pred cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHH
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVES 244 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeS 244 (724)
+..+.|++|.-..+ +.....+.++.++.+++|+. | ..+--.++++|+=.|.| + + ++.
T Consensus 160 ~~~iKlK~g~~~~~---~~g~~~~~~~~~~d~~~v~a----v-R~a~G~d~~l~vDaN~~-~----------~----~~~ 216 (412)
T 4e4u_A 160 FTAVKFDPAGPYTA---YSGHQLSLEVLDRCELFCRR----V-REAVGSKADLLFGTHGQ-M----------V----PSS 216 (412)
T ss_dssp CSEEEECCSCCCBT---TCCBCCCHHHHHHHHHHHHH----H-HHHHTTSSEEEECCCSC-B----------C----HHH
T ss_pred CCEEEECCCCCCcc---ccccccchhhHHHHHHHHHH----H-HHHhCCCCeEEEECCCC-C----------C----HHH
Confidence 77888988742110 11111122233444444443 2 22222468899988733 2 2 367
Q ss_pred HHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhHHHHHHHhhcCCCce
Q 004907 245 AFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDT 324 (724)
Q Consensus 245 Ale~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDT 324 (724)
|+++++.|++.|..=|-=-+...| ++.++.|.++ .+.|+=. ++.+.|.-.+-.++..|--|-
T Consensus 217 A~~~~~~L~~~~i~~iEeP~~~~d----~~~~~~l~~~-----~~iPIa~---------dE~~~~~~~~~~~i~~~a~d~ 278 (412)
T 4e4u_A 217 AIRLAKRLEKYDPLWFEEPVPPGQ----EEAIAQVAKH-----TSIPIAT---------GERLTTKYEFHKLLQAGGASI 278 (412)
T ss_dssp HHHHHHHHGGGCCSEEECCSCSSC----HHHHHHHHHT-----CSSCEEE---------CTTCCHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHhhhcCCcEEECCCChhh----HHHHHHHHhh-----CCCCEEe---------cCccCCHHHHHHHHHcCCCCE
Confidence 889999999998765554444433 5788888887 6777743 456778888999999999999
Q ss_pred eEEecCCCCcccchHHHHHHHh
Q 004907 325 IRVSLTEPPEKEIDPCRRLANL 346 (724)
Q Consensus 325 IRVSLT~dP~~EV~v~~~Ll~~ 346 (724)
|.+-++--- =+.-+++|+++
T Consensus 279 v~~d~~~~G--Git~~~kia~~ 298 (412)
T 4e4u_A 279 LQLNVARVG--GLLEAKKIATL 298 (412)
T ss_dssp ECCCTTTTT--SHHHHHHHHHH
T ss_pred EEeCccccC--CHHHHHHHHHH
Confidence 888776531 13445556554
No 268
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=27.03 E-value=2.6e+02 Score=29.05 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHCCCCcEEEEEe--------cCChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhHHHHH
Q 004907 243 ESAFEFARICRKLDFHNFLFSMK--------ASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGIG 314 (724)
Q Consensus 243 eSAle~~~i~e~~~F~diviS~K--------aSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~~G~IKSaiGiG 314 (724)
+.+++.++.|++.|.+-|.+|.= .+.....+...+.+.+. ++-|+ .-.|.|.|.--.-
T Consensus 239 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~-----~~iPV---------i~~Ggi~t~e~a~ 304 (349)
T 3hgj_A 239 EDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKR-----VGLRT---------GAVGLITTPEQAE 304 (349)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHH-----HCCEE---------EECSSCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHH-----cCceE---------EEECCCCCHHHHH
Confidence 45788999999999999999851 01111223334444444 34454 1235566666666
Q ss_pred HHhhcCCCcee
Q 004907 315 TLLQDGLGDTI 325 (724)
Q Consensus 315 ~LL~~GIGDTI 325 (724)
.+|.+|--|-|
T Consensus 305 ~~l~~G~aD~V 315 (349)
T 3hgj_A 305 TLLQAGSADLV 315 (349)
T ss_dssp HHHHTTSCSEE
T ss_pred HHHHCCCceEE
Confidence 77777765644
No 269
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=27.02 E-value=3.4e+02 Score=26.16 Aligned_cols=116 Identities=15% Similarity=0.158 Sum_probs=67.2
Q ss_pred CHHHHHHHh-hh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHH
Q 004907 154 APSVALRVA-EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM 231 (724)
Q Consensus 154 ~~~lAl~a~-~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il 231 (724)
+..-+++.+ +. ++.|=|.+.++.+.. .+.++++.+.++++|+.+-.+ +|.... .
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~--------------------~~~~~~~~~~l~~~gl~i~~~--~~~~~~--~ 73 (294)
T 3vni_A 18 DYKYYIEKVAKLGFDILEIAASPLPFYS--------------------DIQINELKACAHGNGITLTVG--HGPSAE--Q 73 (294)
T ss_dssp CHHHHHHHHHHHTCSEEEEESTTGGGCC--------------------HHHHHHHHHHHHHTTCEEEEE--ECCCGG--G
T ss_pred CHHHHHHHHHHcCCCEEEecCcccCCcC--------------------HHHHHHHHHHHHHcCCeEEEe--ecCCCC--c
Confidence 344444443 44 899988887652211 224667888999999987542 221100 0
Q ss_pred hhcCCCc---hHHHHHHHHHHHHHHHCCCCcEEEEEec------C---C----hhHHHHHHHHHHHHhhcCCCCcccc
Q 004907 232 SYYGDSP---RGMVESAFEFARICRKLDFHNFLFSMKA------S---N----PVVMVQAYRLLVAEMYVHGWDYPLH 293 (724)
Q Consensus 232 ~~yg~t~---~amVeSAle~~~i~e~~~F~diviS~Ka------S---n----v~~~v~Ayrlla~~m~~~g~dYPLH 293 (724)
.-....+ +..++...+.++++.++|-..+++.+=+ + + ...+++..+.+++...+.|+..-+|
T Consensus 74 ~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE 151 (294)
T 3vni_A 74 NLSSPDPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLE 151 (294)
T ss_dssp CTTCSCHHHHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 0011122 3567778888999999999988743211 1 1 2445667777777766666543333
No 270
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii}
Probab=26.98 E-value=1.5e+02 Score=29.41 Aligned_cols=44 Identities=20% Similarity=0.347 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCC
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASN 268 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSn 268 (724)
.+.++++.++++|+.+.|-+| |++ ++.+ ++++.+.+.||+++.|
T Consensus 144 ~l~~li~~~~~~g~~~~l~TN-G~~-~~~l---------------------~~L~~~~v~isld~~~ 187 (311)
T 2z2u_A 144 YLDELIKIFHKNGFTTFVVSN-GIL-TDVI---------------------EKIEPTQLYISLDAYD 187 (311)
T ss_dssp THHHHHHHHHHTTCEEEEEEC-SCC-HHHH---------------------HHCCCSEEEEECCCSS
T ss_pred hHHHHHHHHHHCCCcEEEECC-CCC-HHHH---------------------HhCCCCEEEEEeecCC
Confidence 477899999999998888887 776 2211 2236688999999865
No 271
>3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana}
Probab=26.92 E-value=1.8e+02 Score=30.41 Aligned_cols=100 Identities=9% Similarity=0.102 Sum_probs=69.2
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
.++++|+=.|. +++ -++.|+++++.|++.|..=|-=-+... -++.++.|.++ .+.|+
T Consensus 192 ~~~~l~vDan~-~~~-------------d~~~A~~~~~~l~~~~i~~iEqP~~~~----~~~~~~~l~~~-----~~iPI 248 (374)
T 3sjn_A 192 PEMEVQIDLAS-KWH-------------TCGHSAMMAKRLEEFNLNWIEEPVLAD----SLISYEKLSRQ-----VSQKI 248 (374)
T ss_dssp SSSEEEEECTT-TTC-------------SHHHHHHHHHHSGGGCCSEEECSSCTT----CHHHHHHHHHH-----CSSEE
T ss_pred CCCeEEEECCC-CCC-------------CHHHHHHHHHHhhhcCceEEECCCCcc----cHHHHHHHHhh-----CCCCE
Confidence 47889998873 332 146789999999998876554333322 36788889888 78887
Q ss_pred cccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHh
Q 004907 293 HLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANL 346 (724)
Q Consensus 293 HLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~ 346 (724)
-. ++.+.|.-.+-.++..|--|-|.+-++--- =+.-+.+|+++
T Consensus 249 a~---------dE~~~~~~~~~~~l~~~~~d~v~~k~~~~G--Git~~~~ia~~ 291 (374)
T 3sjn_A 249 AG---------GESLTTRYEFQEFITKSNADIVQPDITRCG--GITEMKKIYDI 291 (374)
T ss_dssp EE---------CTTCCHHHHHHHHHHHHCCSEECCBTTTSS--HHHHHHHHHHH
T ss_pred Ee---------CCCcCCHHHHHHHHHcCCCCEEEeCccccC--CHHHHHHHHHH
Confidence 54 456778888889999999999887766431 13344555554
No 272
>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}
Probab=26.75 E-value=61 Score=32.67 Aligned_cols=149 Identities=9% Similarity=0.042 Sum_probs=88.3
Q ss_pred EEEeeeecCCCCCeEEeeccCC---CCCCHHHHHHHHHHH--------------HHHHHHHHHHhhhcCCCcceeecCCC
Q 004907 91 VMVGNVAIGSEHPIRVQTMTTN---DTKDVAGTVEEVMRI--------------ADACFEIKNSLVQKNYNIPLVADIHF 153 (724)
Q Consensus 91 V~VG~V~IGG~~PI~VQSMt~t---~T~Dv~atv~Qi~~L--------------~~a~~~I~~~L~~~~~~iPLVADIHF 153 (724)
..+|.-.+|. ++.|+... +..|++.+++.+.++ .+.++.+++.|.+.|..+..+.=-+|
T Consensus 10 ~~~~~w~~~~----~~~~f~~~g~~~~~~~~e~l~~aa~~~G~~~VEl~~~~~~~~~~~~l~~~l~~~Gl~i~~~~~~~~ 85 (333)
T 3ktc_A 10 FGAGLWHFAN----YIDRYAVDGYGPALSTIDQINAAKEVGELSYVDLPYPFTPGVTLSEVKDALKDAGLKAIGITPEIY 85 (333)
T ss_dssp EEEEGGGGSC----CCCSSSTTCSSCCCCHHHHHHHHHHHSSEEEEEEEESCSTTCCHHHHHHHHHHHTCEEEEEEECTT
T ss_pred ceeeeeeeec----ccccccCCCCCCCCCHHHHHHHHHHhCCCCEEEecCCCcchhHHHHHHHHHHHcCCeEEEEecCcC
Confidence 4566666654 44555442 367889999998888 11467888888888877765543233
Q ss_pred C------------H----------HHHHHHhh-h-cCccccCCCCCcchhhhhhccccc-hHHHHHHhhhhhhhHHHHHH
Q 004907 154 A------------P----------SVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYT-DDEYQKELQHIEEVFSPLVE 208 (724)
Q Consensus 154 ~------------~----------~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Yt-deey~~ele~I~e~~~~vv~ 208 (724)
. + +-+++.++ . +..|.+.||--|. .|. ..++.+.++++.+.++++.+
T Consensus 86 ~~~~~~g~l~~~d~~~r~~~i~~~~~~i~~A~~LGa~~vv~~~g~~g~--------~~~~~~~~~~~~~~~~~~l~~l~~ 157 (333)
T 3ktc_A 86 LQKWSRGAFTNPDPAARAAAFELMHESAGIVRELGANYVKVWPGQDGW--------DYPFQVSHKNLWKLAVDGMRDLAG 157 (333)
T ss_dssp SGGGTTCSTTCSSHHHHHHHHHHHHHHHHHHHHHTCSEEEECCTTCEE--------SSTTSSCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhCCCEEEECCCCCCc--------CCCCcCCHHHHHHHHHHHHHHHHH
Confidence 1 1 11223333 3 7888898883221 111 23467788899999999999
Q ss_pred HHHhcCCcEEEee-ccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 209 KCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 209 ~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
.|++ +-|.|.. |++ .+. ..++.+.-+.++++++.|-.++.+-+
T Consensus 158 ~a~~--~~i~lE~~p~~--------~~~---~~~~~~~~~~~~ll~~v~~~~vgl~l 201 (333)
T 3ktc_A 158 ANPD--VKFAIEYKPRE--------PRV---KMTWDSAARTLLGIEDIGLDNVGVLL 201 (333)
T ss_dssp TCTT--SEEEEECCSCS--------SSS---EESSCSHHHHHHHHHHHTCTTEEEEE
T ss_pred Hhhc--CCEEEEEecCC--------CCc---cccCCCHHHHHHHHHHcCCcceEEEE
Confidence 9975 3444442 111 000 01223334455677777877788877
No 273
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1
Probab=26.73 E-value=1e+02 Score=31.16 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=43.6
Q ss_pred CeEEeeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh
Q 004907 103 PIRVQTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC 164 (724)
Q Consensus 103 PI~VQSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~ 164 (724)
||++|-. ..|.+++++|-++|.+ +++.|++ |.++|+ ++=+=.=|...-|+.|+++
T Consensus 65 ~VS~EV~----a~d~e~mi~eA~~L~~~~~nv~IKIP~T~eGl~Ai~~-L~~eGI--~vNvTliFS~~QA~laa~A 133 (230)
T 1vpx_A 65 PVSAEVV----SLDYEGMVREARELAQISEYVVIKIPMTPDGIKAVKT-LSAEGI--KTNVTLVFSPAQAILAAKA 133 (230)
T ss_dssp CEEEECS----CCSHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHH-HHHTTC--CEEEEEECSHHHHHHHHHH
T ss_pred cEEEEEc----cCCHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHH-HHHCCC--CEEEEEeCCHHHHHHHHhC
Confidence 8999975 7799999999999998 6777765 566665 4444556888889999876
No 274
>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}
Probab=26.69 E-value=1.7e+02 Score=27.86 Aligned_cols=138 Identities=9% Similarity=0.043 Sum_probs=74.7
Q ss_pred eEEeeccCCCCCCHHHHHHHHHHHHH-----------------HHHHHHHHhhhcCCCcceee-cCCCC-H---------
Q 004907 104 IRVQTMTTNDTKDVAGTVEEVMRIAD-----------------ACFEIKNSLVQKNYNIPLVA-DIHFA-P--------- 155 (724)
Q Consensus 104 I~VQSMt~t~T~Dv~atv~Qi~~L~~-----------------a~~~I~~~L~~~~~~iPLVA-DIHF~-~--------- 155 (724)
+.+.|++- ...+.+..++.+.++-= .++++++.|.+.+..+..+. .+.|. +
T Consensus 6 ~~~~~~~~-~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~ 84 (281)
T 3u0h_A 6 PCLHPTLV-DETSLVLYLDLARETGYRYVDVPFHWLEAEAERHGDAAVEAMFQRRGLVLANLGLPLNLYDSEPVFLRELS 84 (281)
T ss_dssp EEECGGGT-TCCCHHHHHHHHHHTTCSEECCCHHHHHHHHHHHCHHHHHHHHHTTTCEECCEECCSCTTSCHHHHHHHHH
T ss_pred hhhcchhc-cCCCHHHHHHHHHHcCCCEEEecHHHHHHHhcccCHHHHHHHHHHcCCceEEecccccccCCCHHHHHHHH
Confidence 45556433 34567766666554411 35678887777777665433 12221 1
Q ss_pred --HHHHHHhhh--cCccc--cCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCCCch
Q 004907 156 --SVALRVAEC--FDKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSD 228 (724)
Q Consensus 156 --~lAl~a~~~--vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~ 228 (724)
+-+++.++. +..|+ +-||+-. ...+.++++.+.+.++.+.|+++|+.+ ++ |++.-..
T Consensus 85 ~~~~~i~~A~~lG~~~v~~~~~p~~~~--------------~~~~~~~~~~~~l~~l~~~a~~~Gv~l--~lE~~~~~~~ 148 (281)
T 3u0h_A 85 LLPDRARLCARLGARSVTAFLWPSMDE--------------EPVRYISQLARRIRQVAVELLPLGMRV--GLEYVGPHHL 148 (281)
T ss_dssp THHHHHHHHHHTTCCEEEEECCSEESS--------------CHHHHHHHHHHHHHHHHHHHGGGTCEE--EEECCCCGGG
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCC--------------cchhhHHHHHHHHHHHHHHHHHcCCEE--EEEecccccc
Confidence 113333332 66666 3343210 112466778888999999999999754 54 3431100
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 229 RIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 229 ~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
+ ++ +-.++.+.-+..+++++.|-.++.+-+
T Consensus 149 ~----~~--~~~~~~~~~~~~~l~~~v~~~~vg~~~ 178 (281)
T 3u0h_A 149 R----HR--RYPFVQSLADLKTFWEAIGAPNVGALV 178 (281)
T ss_dssp C----CS--SEECCCSHHHHHHHHHHHCCTTEEEEE
T ss_pred c----cc--cccccCCHHHHHHHHHHcCCCCeeEEe
Confidence 0 00 001122333456777888888888877
No 275
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=26.67 E-value=3.6e+02 Score=28.43 Aligned_cols=131 Identities=19% Similarity=0.246 Sum_probs=77.3
Q ss_pred hhhcCCCcceeecCCCCHHHHHHHhhh-cCccccC----CCCCcchhhhhh--------cccc-chHH-HHHHhhhhhhh
Q 004907 138 LVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVN----PGNFADRRAQFE--------QLEY-TDDE-YQKELQHIEEV 202 (724)
Q Consensus 138 L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRIN----PGNig~~~k~f~--------~~~Y-tdee-y~~ele~I~e~ 202 (724)
+.+..+++|+|||++ |..=|+.+++. ++=||-- -||+..--+-.. -.-| |+++ |.... .+..-
T Consensus 109 I~k~~f~vpfv~~~~-~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~-~~~ad 186 (291)
T 3o07_A 109 IEKDKFKVPFVCGAK-DLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAE-EMRVP 186 (291)
T ss_dssp CCGGGCSSCEEEEES-SHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH-HHTSC
T ss_pred hhhhcCCCcEEeeCC-CHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhccc-ccCCC
Confidence 344567899999997 46667777776 9999974 677754221111 1136 7766 33321 22333
Q ss_pred HHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE---EecCChhHHHHHHHHH
Q 004907 203 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS---MKASNPVVMVQAYRLL 279 (724)
Q Consensus 203 ~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS---~KaSnv~~~v~Ayrll 279 (724)
+.-+-+..+.-.+|+=+=.|.| + .||+ .+..+-+.|.+-+.|- +||.||..+.++|+..
T Consensus 187 ~elI~~Ike~~~IPVV~IAnGG-I---------~Tpe--------dA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~A 248 (291)
T 3o07_A 187 VSLLKDVLEKGKLPVVNFAAGG-V---------ATPA--------DAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEA 248 (291)
T ss_dssp HHHHHHHHHHTSCSSCEEBCSS-C---------CSHH--------HHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCEEEecCCC-C---------CCHH--------HHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHH
Confidence 3333333444456651101333 3 2342 2222336788888775 8999999999999988
Q ss_pred HHHhhcCCCCcccc
Q 004907 280 VAEMYVHGWDYPLH 293 (724)
Q Consensus 280 a~~m~~~g~dYPLH 293 (724)
.+. ++-|--
T Consensus 249 v~~-----~~~~~~ 257 (291)
T 3o07_A 249 TTH-----FDNPSK 257 (291)
T ss_dssp HHT-----TTCHHH
T ss_pred HHh-----ccCHHH
Confidence 887 555543
No 276
>4b3l_A Beta-glucosidase; hydrolase, glycosidase, carbohydrate-active enzyme; 2.51A {Streptococcus pyogenes} PDB: 4b3k_A
Probab=26.47 E-value=98 Score=34.27 Aligned_cols=52 Identities=19% Similarity=0.444 Sum_probs=45.6
Q ss_pred HHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHH
Q 004907 203 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 254 (724)
Q Consensus 203 ~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~ 254 (724)
...+++.|+++||-.=|...|-.|+.-+.++||. ....+|+-=.++++.|-+
T Consensus 98 Y~~lid~l~~~gI~p~vtL~H~dlP~~L~~~yGGW~nr~~vd~F~~YA~~~f~ 150 (479)
T 4b3l_A 98 YNRVIDACLANGIRPVINLHHFDLPIALYQAYGGWESKHVVDLFVAFSKVCFE 150 (479)
T ss_dssp HHHHHHHHHHHTCEEEEESCSSCCBHHHHHHHCGGGCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEeeEEecCCCcCHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence 3559999999999999999999999999999995 667899988899987644
No 277
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=25.78 E-value=62 Score=26.41 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=19.6
Q ss_pred CCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeee
Q 004907 651 HLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKR 696 (724)
Q Consensus 651 hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~ 696 (724)
.++++++..+-|--|. +. -..||+.+ .|- +.+|++++.+.+
T Consensus 46 ~~~~~~~~~vd~~~~~--~l-~~~~~v~~-~Pt-~~~~~~G~~~~~ 86 (105)
T 4euy_A 46 NYNYVEKIEILLQDMQ--EI-AGRYAVFT-GPT-VLLFYNGKEILR 86 (105)
T ss_dssp TCTTEEEEEEEECCC------------CC-CCE-EEEEETTEEEEE
T ss_pred HcCCceEEEEECCCCH--HH-HHhcCCCC-CCE-EEEEeCCeEEEE
Confidence 4466777765553332 22 24578776 474 457787777753
No 278
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=25.70 E-value=35 Score=35.24 Aligned_cols=125 Identities=19% Similarity=0.310 Sum_probs=75.0
Q ss_pred cCCCCCeEEeeccC--CCCCCHHHHHHHHHHHHH-------------HHHHHHHHhhhcC-------CCccee---e---
Q 004907 98 IGSEHPIRVQTMTT--NDTKDVAGTVEEVMRIAD-------------ACFEIKNSLVQKN-------YNIPLV---A--- 149 (724)
Q Consensus 98 IGG~~PI~VQSMt~--t~T~Dv~atv~Qi~~L~~-------------a~~~I~~~L~~~~-------~~iPLV---A--- 149 (724)
|||+. +.|++|.. .+..+.+.|-.|+.+|.+ -+..+.+.+...+ -.++++ .
T Consensus 38 I~Gd~-v~V~~lv~~g~dPH~yeptp~d~~~l~~ADlvv~~G~~lE~w~~k~~~~~~~~~~~~v~~s~~i~~~~~~~~~~ 116 (312)
T 2o1e_A 38 IVKDK-GDVDLLIPSSVEPHDWEPTPKDIANIQDADLFVYNSEYMETWVPSAEKSMGQGHAVFVNASKGIDLMEGSEEEH 116 (312)
T ss_dssp HHGGG-EEEEESSCTTSCTTTCCCCHHHHHHHHHSSEEEESCTTTSTTHHHHHHTTCSSSCEEEETTTTCCCCCC-----
T ss_pred HhCCc-eEEEEccCCCCCCccccCCHHHHHHHhcCCEEEEcCCChHhHHHHHHHhcccCCCeEEEecCCcccccCccccc
Confidence 55554 88899865 578999999999999999 2444444322111 122222 0
Q ss_pred --------------c--CCCCHHHHHHHhhh-cCc-cccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHH
Q 004907 150 --------------D--IHFAPSVALRVAEC-FDK-IRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCK 211 (724)
Q Consensus 150 --------------D--IHF~~~lAl~a~~~-vdk-iRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ak 211 (724)
| +-+||..|...++. .+. +++.|.|=..=+++ -+.|.++|+.+++.++..+..++
T Consensus 117 ~~~~~~~~~~~~~~DPHvWldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~N-------~~~~~~~L~~Ld~~~~~~l~~~~ 189 (312)
T 2o1e_A 117 EEHDHGEHEHSHAMDPHVWLSPVLAQKEVKNITAQIVKQDPDNKEYYEKN-------SKEYIAKLQDLDKLYRTTAKKAE 189 (312)
T ss_dssp -----------CCCCCGGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHH-------HHHHHHHHHHHHHHHHHHHHSCS
T ss_pred ccccccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHhCchhHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccC
Confidence 1 22455666665554 333 24788764221111 45699999999999888887664
Q ss_pred hcCCcEEEeeccCCCchHHHhhcC
Q 004907 212 KYGRAVRIGTNHGSLSDRIMSYYG 235 (724)
Q Consensus 212 e~g~~IRIGvN~GSL~~~il~~yg 235 (724)
+.. +=|.|.++ ..+.++||
T Consensus 190 --~~~--~v~~H~af-~Yfa~~yG 208 (312)
T 2o1e_A 190 --KKE--FITQHTAF-GYLAKEYG 208 (312)
T ss_dssp --CCE--EEESSCTT-HHHHHHTT
T ss_pred --CCE--EEEECCch-HHHHHHCC
Confidence 333 45667765 34555555
No 279
>2qc7_A ERP31, ERP28, endoplasmic reticulum protein ERP29; B domain (residues 33-153), D domain (residues 154-261), CHA; 2.90A {Homo sapiens} PDB: 1g7e_A 1g7d_A
Probab=25.69 E-value=70 Score=31.93 Aligned_cols=82 Identities=16% Similarity=0.207 Sum_probs=50.8
Q ss_pred ceeec-CCCCccccccHHHHHHHHHHHhcCCCCcEEEEeee-----eecCCCCCCCCceeeec-CCCceeEeeecce---
Q 004907 623 TEYVS-CPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGC-----IVNGPGEMADADFGYVG-GAPGKIDLYVGKT--- 692 (724)
Q Consensus 623 te~IS-CPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGC-----IVNGPGEmadAD~GyvG-g~pGki~Ly~gke--- 692 (724)
++|-+ ||-|| +..+..++.+....-+.++|+-+.| -.|. +. -..||+-| +-| .+.+|++++
T Consensus 27 V~FyA~~pWCg-----l~P~~e~lA~~~~~~~~v~~akVDvd~~g~~~~~--~l-~~~~~V~~~~~P-Tl~~f~~G~~~~ 97 (240)
T 2qc7_A 27 VKFDTQYPYGE-----KQDEFKRLAENSASSDDLLVAEVGISDYGDKLNM--EL-SEKYKLDKESYP-VFYLFRDGDFEN 97 (240)
T ss_dssp EEECCSSCCSH-----HHHHHHHHHHHHTTCTTEEEEEECCCCSSSCCSH--HH-HHHTTCCGGGCS-EEEEEETTCSSC
T ss_pred EEEeCCCCCCc-----chHHHHHHHHHhcCCCCeEEEEEeCCcccchhhH--HH-HHHcCCCCCCCC-EEEEEeCCCcCc
Confidence 56777 99999 6666677776666556799998773 3331 11 12578873 357 466888655
Q ss_pred eeeecCChhHHHHHHHHHHHhcc
Q 004907 693 VVKRGIAMEQATDALIQLIKDHG 715 (724)
Q Consensus 693 ~V~~~Ipeeeavd~Li~lIk~~g 715 (724)
..+ +....-.+.|++.|+++.
T Consensus 98 ~~~--y~G~~~~~~L~~fi~~~~ 118 (240)
T 2qc7_A 98 PVP--YTGAVKVGAIQRWLKGQG 118 (240)
T ss_dssp CEE--CCSCSCHHHHHHHHHHTT
T ss_pred cee--ecCCCCHHHHHHHHHHhc
Confidence 333 333223466777777764
No 280
>4gfi_A Mandelate racemase/muconate lactonizing enzyme FA protein; putative L-Ala-L/D-Glu epimerase; HET: GLU; 1.90A {Agrobacterium tumefaciens}
Probab=25.57 E-value=29 Score=35.69 Aligned_cols=63 Identities=10% Similarity=0.117 Sum_probs=44.7
Q ss_pred hhcCCCcceeecCCCCH-HHHHHHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcE
Q 004907 139 VQKNYNIPLVADIHFAP-SVALRVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAV 217 (724)
Q Consensus 139 ~~~~~~iPLVADIHF~~-~lAl~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~I 217 (724)
.+...++|+.+|=+... .-+...++++|-+.|.|...|.-. ...++.+.|+++|+++
T Consensus 215 ~~~~~~ipia~dEs~~~~~d~~~~~~a~d~i~~k~~~~GGit----------------------~~~~i~~~A~~~gi~~ 272 (329)
T 4gfi_A 215 ARIEHPVLICADESVHSTEDLAGLRDRYDAINIKLDKTGGLT----------------------EALVMKAEAERLGFTI 272 (329)
T ss_dssp GGSCCSSEEEESTTCCTGGGSGGGTTTCSEEEECHHHHTSHH----------------------HHHHHHHHHHHTTCEE
T ss_pred HHhcCCCCchhccCCCCHHHHHHHhhccCeEEecCceeCCHH----------------------HHHHHHHHHHHCCCEE
Confidence 45677899999976432 212223455888889998888733 3577999999999999
Q ss_pred EEeecc
Q 004907 218 RIGTNH 223 (724)
Q Consensus 218 RIGvN~ 223 (724)
=+|-..
T Consensus 273 ~~~~~~ 278 (329)
T 4gfi_A 273 MVGCML 278 (329)
T ss_dssp EECCCS
T ss_pred EECCcc
Confidence 776543
No 281
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=25.52 E-value=2.2e+02 Score=29.58 Aligned_cols=82 Identities=16% Similarity=0.196 Sum_probs=58.5
Q ss_pred CCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccc
Q 004907 214 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLH 293 (724)
Q Consensus 214 g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLH 293 (724)
+++||+=+|.| + ++ +.|+++++.|++.|. -|-=-+ . -++.++.|.++ .+.|+=
T Consensus 189 d~~l~vDan~~-~----------~~----~~a~~~~~~l~~~~i-~iE~P~-----~-~~~~~~~l~~~-----~~iPI~ 241 (379)
T 2rdx_A 189 GEKAMADANQG-W----------RV----DNAIRLARATRDLDY-ILEQPC-----R-SYEECQQVRRV-----ADQPMK 241 (379)
T ss_dssp TCEEEEECTTC-S----------CH----HHHHHHHHHTTTSCC-EEECCS-----S-SHHHHHHHHTT-----CCSCEE
T ss_pred CCEEEEECCCC-C----------CH----HHHHHHHHHHHhCCe-EEeCCc-----C-CHHHHHHHHhh-----CCCCEE
Confidence 58888887743 2 22 567889999999876 332111 1 46777777776 667763
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC
Q 004907 294 LGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE 331 (724)
Q Consensus 294 LGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~ 331 (724)
-++.+.+.-.+-.+|.+|--|-|.+-++-
T Consensus 242 ---------~de~i~~~~~~~~~i~~~~~d~v~ik~~~ 270 (379)
T 2rdx_A 242 ---------LDECVTGLHMAQRIVADRGAEICCLKISN 270 (379)
T ss_dssp ---------ECTTCCSHHHHHHHHHHTCCSEEEEETTT
T ss_pred ---------EeCCcCCHHHHHHHHHcCCCCEEEEeccc
Confidence 34677788889999999999999987765
No 282
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=25.49 E-value=29 Score=37.07 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=40.5
Q ss_pred CccccCCCCCcchh----hh-hhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 166 DKIRVNPGNFADRR----AQ-FEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 166 dkiRINPGNig~~~----k~-f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
.+|-+-|+-+.+.- -- ||..-+|.|+..+.+++|.+.|..+.+.|+++|++.|...
T Consensus 277 ~gIlv~Pd~~aNaGGV~~s~~~E~~~w~~e~v~~~l~~i~~~~~~i~~~~~~~~~~~~~aA 337 (355)
T 1c1d_A 277 RGILYAPDFVANAGGAIHLVGREVLGWSESVVHERAVAIGDTLNQVFEISDNDGVTPDEAA 337 (355)
T ss_dssp TTCEECCHHHHTTHHHHHHHHHHTTCCCHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCEEEECCeEEcCCCeeeeeeehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 44556666443211 12 5556678899999999999999999999999998776543
No 283
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=25.48 E-value=4.2e+02 Score=24.80 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=45.0
Q ss_pred eeccCCCCCCHHHHHHHHHHHHH--------------HHHHHHHHhhhcCCCcceee--cCCCCHHHHHHHhhh-cCccc
Q 004907 107 QTMTTNDTKDVAGTVEEVMRIAD--------------ACFEIKNSLVQKNYNIPLVA--DIHFAPSVALRVAEC-FDKIR 169 (724)
Q Consensus 107 QSMt~t~T~Dv~atv~Qi~~L~~--------------a~~~I~~~L~~~~~~iPLVA--DIHF~~~lAl~a~~~-vdkiR 169 (724)
-|+... |.+..++++.++.+ .++.|++ +++.+++|++- ..-.++..+..|++. +|.|-
T Consensus 11 ~~i~~~---d~~~~~~~~~~~~~~G~~~i~l~~~~~~~~~~i~~--i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~ 85 (212)
T 2v82_A 11 AILRGI---TPDEALAHVGAVIDAGFDAVEIPLNSPQWEQSIPA--IVDAYGDKALIGAGTVLKPEQVDALARMGCQLIV 85 (212)
T ss_dssp EECTTC---CHHHHHHHHHHHHHHTCCEEEEETTSTTHHHHHHH--HHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEE
T ss_pred EEEeCC---CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHH--HHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEE
Confidence 455444 45555666666655 3444444 22235666553 222344555566665 77774
Q ss_pred cCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee
Q 004907 170 VNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 170 INPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv 221 (724)
++... .++++.++++|.++-+|+
T Consensus 86 -----~~~~~------------------------~~~~~~~~~~g~~~~~g~ 108 (212)
T 2v82_A 86 -----TPNIH------------------------SEVIRRAVGYGMTVCPGC 108 (212)
T ss_dssp -----CSSCC------------------------HHHHHHHHHTTCEEECEE
T ss_pred -----eCCCC------------------------HHHHHHHHHcCCCEEeec
Confidence 22211 236788999998877774
No 284
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=25.28 E-value=2.2e+02 Score=27.57 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=67.3
Q ss_pred CCHHHHHHHhh-h-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE-Eee------cc
Q 004907 153 FAPSVALRVAE-C-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR-IGT------NH 223 (724)
Q Consensus 153 F~~~lAl~a~~-~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR-IGv------N~ 223 (724)
++..-+++.++ . ++.|-|...+.... +....++ .+.++++-+.++++|+.+- +.. |.
T Consensus 30 ~~~~~~l~~~~~~G~~~iEl~~~~~~~~---~~~~~~~-----------~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l 95 (295)
T 3cqj_A 30 ECWLERLQLAKTLGFDFVEMSVDETDER---LSRLDWS-----------REQRLALVNAIVETGVRVPSMCLSAHRRFPL 95 (295)
T ss_dssp SCHHHHHHHHHHTTCSEEEEECCSSHHH---HGGGGCC-----------HHHHHHHHHHHHHHCCEEEEEEEGGGGTSCT
T ss_pred CCHHHHHHHHHhcCCCEEEEecCCcccc---cCcccCC-----------HHHHHHHHHHHHHcCCeEEEEecCcccCCCC
Confidence 45555554444 4 88888876554210 0000111 2235667788999999875 221 22
Q ss_pred CCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC--------ChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 224 GSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS--------NPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 224 GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS--------nv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
+|.++.. -+..++...+.++++.++|-..|++.--.. ....+++..+.+++...+.|+..-+
T Consensus 96 ~~~d~~~-------r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l 165 (295)
T 3cqj_A 96 GSEDDAV-------RAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAM 165 (295)
T ss_dssp TCSSHHH-------HHHHHHHHHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred CCCCHHH-------HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Confidence 3322221 245678888899999999999888752110 1234566667777665555554333
No 285
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=25.03 E-value=34 Score=36.43 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=33.3
Q ss_pred hhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEe
Q 004907 182 FEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIG 220 (724)
Q Consensus 182 f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIG 220 (724)
||..-+|+|+..+.+++|.+.|..+.+.|+++|++.|..
T Consensus 296 ~E~~~~~~e~v~~~l~~i~~~~~~i~~~~~~~~~~~~~a 334 (364)
T 1leh_A 296 DELYGYNRTRAMKRVDGIYDSIEKIFAISKRDGVPSYVA 334 (364)
T ss_dssp HGGGCCCHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHH
Confidence 666677899999999999999999999999998776543
No 286
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*
Probab=24.81 E-value=4.1e+02 Score=28.15 Aligned_cols=116 Identities=10% Similarity=0.065 Sum_probs=59.5
Q ss_pred hhcCCCcceeecCCCCHHHHHHHhhh-cCcccc-CCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcC--
Q 004907 139 VQKNYNIPLVADIHFAPSVALRVAEC-FDKIRV-NPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYG-- 214 (724)
Q Consensus 139 ~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRI-NPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g-- 214 (724)
.+.+.+.++.+=.=-+.+-...|+++ ++-||| .+-|=-... + +....+.+-+.+.+.|+.||++|
T Consensus 61 ~~~~~~~~v~~~~r~~~~di~~a~~~g~~~v~i~~~~s~~~~~-~----------~~~s~~e~l~~~~~~v~~ak~~g~~ 129 (382)
T 2ztj_A 61 ASLGLKAKVVTHIQCRLDAAKVAVETGVQGIDLLFGTSKYLRA-P----------HGRDIPRIIEEAKEVIAYIREAAPH 129 (382)
T ss_dssp HTSCCSSEEEEEEESCHHHHHHHHHTTCSEEEEEECC-------------------CCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred HhcCCCcEEEEEcccChhhHHHHHHcCCCEEEEEeccCHHHHH-H----------hCCCHHHHHHHHHHHHHHHHHcCCC
Confidence 33355566655221123334556666 888885 233211111 1 11122334456788999999999
Q ss_pred CcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHHHHHH
Q 004907 215 RAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYRLLVA 281 (724)
Q Consensus 215 ~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~v~Ayrlla~ 281 (724)
..+++..-.++ + .++ +-+++.++.+.+. -+ .|+++-+ .|..+-+-.+.|.+
T Consensus 130 ~~v~~~~ed~~-------~--~~~----~~~~~~~~~~~~~-a~--~i~l~DT~G~~~P~~~~~lv~~l~~ 184 (382)
T 2ztj_A 130 VEVRFSAEDTF-------R--SEE----QDLLAVYEAVAPY-VD--RVGLADTVGVATPRQVYALVREVRR 184 (382)
T ss_dssp SEEEEEETTTT-------T--SCH----HHHHHHHHHHGGG-CS--EEEEEETTSCCCHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCC-------C--CCH----HHHHHHHHHHHHh-cC--EEEecCCCCCCCHHHHHHHHHHHHH
Confidence 88888764322 1 233 4455566666666 44 5666654 44444444444444
No 287
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=24.69 E-value=1.3e+02 Score=30.82 Aligned_cols=62 Identities=13% Similarity=0.188 Sum_probs=46.1
Q ss_pred hhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHH
Q 004907 198 HIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYR 277 (724)
Q Consensus 198 ~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayr 277 (724)
.+....+.++.+|+++|++. |+.. .+| +.++.+.++||+-+.++. |+..+.++.+
T Consensus 215 ~v~~a~~~iv~aaraaG~~~--gv~~------------~d~--------~~a~~~~~~G~~~~s~~~---d~~~l~~~~~ 269 (287)
T 2v5j_A 215 EVQAAIEQAIVQIRESGKAP--GILI------------ANE--------QLAKRYLELGALFVAVGV---DTTLLARAAE 269 (287)
T ss_dssp HHHHHHHHHHHHHHHTTSEE--EEEC------------CCH--------HHHHHHHHTTCSEEEEEE---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCee--EEec------------CCH--------HHHHHHHHhCCCEEEECc---HHHHHHHHHH
Confidence 34455678999999999997 6622 233 366778899999887765 7888888888
Q ss_pred HHHHHhh
Q 004907 278 LLVAEMY 284 (724)
Q Consensus 278 lla~~m~ 284 (724)
.+.+.+.
T Consensus 270 ~~~~~~~ 276 (287)
T 2v5j_A 270 ALAARFG 276 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8877753
No 288
>3tkf_A Transaldolase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel/TIM barrel; HET: I22 EPE; 1.50A {Francisella tularensis subsp} PDB: 3te9_A* 3upb_A* 3tk7_A* 3tno_A* 4e0c_A 3igx_A
Probab=24.69 E-value=2.6e+02 Score=29.97 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=47.4
Q ss_pred cCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEEecCChhHHHHHHHHHHHH
Q 004907 223 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH--NFLFSMKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 223 ~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~--diviS~KaSnv~~~v~Ayrlla~~ 282 (724)
.|-+|-.+..++..+.++||+.|.+.++++++.|.+ ||+|-+-++ ..=++|-+.|.++
T Consensus 117 ~G~VS~EV~~~ls~d~e~~i~eA~~l~~l~~~~gi~~~nv~IKIP~T--~eGi~A~~~L~~e 176 (345)
T 3tkf_A 117 EGKVSSEVDARVSFNSATTIDYAKRIIARYESNGIPKDRVLIMIAAT--WEGIKAAKLLQKE 176 (345)
T ss_dssp SSCEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEECS--HHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCccCCHHHHHHHHHHHHHHhhhcCCCCCcEEEEeCCC--HHHHHHHHHHHHC
Confidence 566666666666778899999999999999999996 899888777 5678888888765
No 289
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Probab=24.65 E-value=1.2e+02 Score=30.72 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 270 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 270 (724)
.+.++++.+|+.+ ++|-+|.|.++++ .++.+.+.|++.+.+|+++.|..
T Consensus 118 ~~~~li~~i~~~~--~~i~~s~g~l~~e------------------~l~~L~~ag~~~v~i~let~~~~ 166 (348)
T 3iix_A 118 VISDIVKEIKKMG--VAVTLSLGEWPRE------------------YYEKWKEAGADRYLLRHETANPV 166 (348)
T ss_dssp HHHHHHHHHHTTS--CEEEEECCCCCHH------------------HHHHHHHHTCCEEECCCBCSCHH
T ss_pred HHHHHHHHHHhcC--ceEEEecCCCCHH------------------HHHHHHHhCCCEEeeeeeeCCHH
Confidence 4677888888875 4556788877554 45556677899999999998754
No 290
>2xhy_A BGLA, 6-phospho-beta-glucosidase BGLA; hydrolase, glycosidase; 2.30A {Escherichia coli}
Probab=24.44 E-value=1.2e+02 Score=33.44 Aligned_cols=52 Identities=19% Similarity=0.338 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHH
Q 004907 203 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 254 (724)
Q Consensus 203 ~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~ 254 (724)
...+|+.|+++|+-.=|...|-.++..+.++||. +...+++.-.++++.|-+
T Consensus 114 yd~lid~l~~~GI~pivtL~H~d~P~~l~~~~ggw~~~~~~~~F~~ya~~~~~ 166 (479)
T 2xhy_A 114 YDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKVVDFFVRFAEVVFE 166 (479)
T ss_dssp HHHHHHHHHHTTCEEEEEEESSCCBHHHHHHSCGGGSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCEEEEEcCCCCCCHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 4559999999999999999999999999888884 455677777777775544
No 291
>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*
Probab=24.41 E-value=1.3e+02 Score=31.29 Aligned_cols=83 Identities=12% Similarity=0.135 Sum_probs=50.9
Q ss_pred cCccccCCCCCcchhhhhhccccc-hHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCCCchHHHhhcCCCchHHH
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYT-DDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMV 242 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Yt-deey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amV 242 (724)
+..|.+.||..|.. |. ...+.+.++++.+.+.++.+.|+++|--|||++ |+..-+. +-.++
T Consensus 130 a~~vv~~~G~~g~~--------~~~~~~~~~~~~~~~e~L~~l~~~A~~~g~gv~l~lE~~~~~~~---------~~~~~ 192 (393)
T 1xim_A 130 AKTLVLWGGREGAE--------YDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPKPNEPR---------GDILL 192 (393)
T ss_dssp CCEEEEECTTSEES--------SGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCSSSSS---------SEESS
T ss_pred CCEEEECCCCCCCc--------CCccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCCC---------CCCcC
Confidence 77888888865421 11 223667789999999999999999843456776 3321100 00122
Q ss_pred HHHHHHHHHHHHCCCCc-EEEEE
Q 004907 243 ESAFEFARICRKLDFHN-FLFSM 264 (724)
Q Consensus 243 eSAle~~~i~e~~~F~d-iviS~ 264 (724)
.+.-+.++++++.|-.+ +.+-+
T Consensus 193 ~t~~~~~~ll~~v~~~~~vgl~l 215 (393)
T 1xim_A 193 PTAGHAIAFVQELERPELFGINP 215 (393)
T ss_dssp CSHHHHHHHHTTSSSGGGEEECC
T ss_pred CCHHHHHHHHHHhCCccceEEEE
Confidence 23334556677777766 66655
No 292
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=24.34 E-value=4.1e+02 Score=27.77 Aligned_cols=70 Identities=17% Similarity=0.101 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHCCCCcEEEEEec--------CChhHHHHHHHHHHHHhhcCCCCccccccccccCCCCCCchhhHHHH
Q 004907 242 VESAFEFARICRKLDFHNFLFSMKA--------SNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGEGEDGRMKSAIGI 313 (724)
Q Consensus 242 VeSAle~~~i~e~~~F~diviS~Ka--------Snv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~~~~G~IKSaiGi 313 (724)
.+.+.+.++.|++.|.+=|.+|.=. +.....+...+.+.+. ++-|+= -.|.|.|.--.
T Consensus 245 ~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~-----~~iPVi---------~~GgI~s~e~a 310 (363)
T 3l5l_A 245 LEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRRE-----AKLPVT---------SAWGFGTPQLA 310 (363)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHH-----HTCCEE---------ECSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHH-----cCCcEE---------EeCCCCCHHHH
Confidence 5678899999999999999998621 1111223333444444 455542 24667777777
Q ss_pred HHHhhcCCCcee
Q 004907 314 GTLLQDGLGDTI 325 (724)
Q Consensus 314 G~LL~~GIGDTI 325 (724)
-.+|.+|--|-|
T Consensus 311 ~~~l~~G~aD~V 322 (363)
T 3l5l_A 311 EAALQANQLDLV 322 (363)
T ss_dssp HHHHHTTSCSEE
T ss_pred HHHHHCCCccEE
Confidence 778888766643
No 293
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=24.33 E-value=25 Score=40.55 Aligned_cols=42 Identities=31% Similarity=0.551 Sum_probs=26.2
Q ss_pred ccCCcceeecCCCCcccc-c--cHH--HHHHHHHHHhcCCC-CcEEEE
Q 004907 618 MRNTKTEYVSCPSCGRTL-F--DLQ--EISAEIREKTSHLP-GVSIAI 659 (724)
Q Consensus 618 ~R~~kte~ISCPsCGRTl-f--DLq--~~~~~Ik~~t~hLk-gvkIAV 659 (724)
=|.++.+-||||.||..+ + |-. +.-+.|++....|+ |--||+
T Consensus 82 dRRfHAqp~aCp~CGP~l~~l~~~~~~~~~~~i~~aa~~L~~G~IVa~ 129 (657)
T 3ttc_A 82 DRRFHAQPVACPECGPYLEWVSHGEHAEQEAALQAAIAQLKMGNIVAI 129 (657)
T ss_dssp STTTTCTTCCCTTTSCCEEEEETTEEEEHHHHHHHHHHHHHTTCCEEE
T ss_pred CCcCcCCCCcCcccCccceEeecCCCCcchHHHHHHHHHHHcCCEEEE
Confidence 388999999999999998 3 211 01223444444444 555665
No 294
>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*
Probab=24.20 E-value=78 Score=32.59 Aligned_cols=73 Identities=25% Similarity=0.277 Sum_probs=51.1
Q ss_pred HHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHh
Q 004907 134 IKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKK 212 (724)
Q Consensus 134 I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake 212 (724)
+.++|...|+.+-|--| =++.....|.+. ++.|=+--|.|++- |++.+-++||++|.+ -.+.|.+
T Consensus 119 ~i~~L~~~GIrVSLFID--pd~~qi~aA~~~GA~~IELhTG~Ya~a--------~~~~~~~~el~~i~~----aa~~A~~ 184 (243)
T 1m5w_A 119 ACKRLADAGIQVSLFID--ADEEQIKAAAEVGAPFIEIHTGCYADA--------KTDAEQAQELARIAK----AATFAAS 184 (243)
T ss_dssp HHHHHHHTTCEEEEEEC--SCHHHHHHHHHTTCSEEEEECHHHHHC--------CSHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEechhhhcC--------CCchhHHHHHHHHHH----HHHHHHH
Confidence 33444557888888887 455555566666 99999999998763 233445577777766 6788999
Q ss_pred cCCcEEEeeccC
Q 004907 213 YGRAVRIGTNHG 224 (724)
Q Consensus 213 ~g~~IRIGvN~G 224 (724)
.|. |||.|
T Consensus 185 lGL----~VnAG 192 (243)
T 1m5w_A 185 LGL----KVNAG 192 (243)
T ss_dssp TTC----EEEEE
T ss_pred cCC----EEecC
Confidence 985 67766
No 295
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=24.14 E-value=1.6e+02 Score=29.83 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=36.6
Q ss_pred hHHHHHHHHHhcCC--cEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 004907 202 VFSPLVEKCKKYGR--AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 270 (724)
Q Consensus 202 ~~~~vv~~ake~g~--~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 270 (724)
.+.++++.+++++. .+.|-+| |++-. +.++.+.+.|.+.|.||+.+.+..
T Consensus 82 ~l~~li~~~~~~~~~~~i~i~TN-G~ll~------------------~~~~~L~~~g~~~v~iSld~~~~~ 133 (340)
T 1tv8_A 82 DLDVLIAKLNQIDGIEDIGLTTN-GLLLK------------------KHGQKLYDAGLRRINVSLDAIDDT 133 (340)
T ss_dssp THHHHHHHHTTCTTCCEEEEEEC-STTHH------------------HHHHHHHHHTCCEEEEECCCSSHH
T ss_pred hHHHHHHHHHhCCCCCeEEEEeC-ccchH------------------HHHHHHHHCCCCEEEEecCCCCHH
Confidence 36789999999876 7888787 45411 134556677999999999998753
No 296
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=24.08 E-value=1.6e+02 Score=31.24 Aligned_cols=100 Identities=17% Similarity=0.146 Sum_probs=51.3
Q ss_pred HHHHHHhhh-cCccccCCCCC------cchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCch
Q 004907 156 SVALRVAEC-FDKIRVNPGNF------ADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSD 228 (724)
Q Consensus 156 ~lAl~a~~~-vdkiRINPGNi------g~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~ 228 (724)
+.|..|.++ +|.|-||-+|= -....+-...+|-- ......+.+.|-++.|.+++...-+-+||..+.. . .
T Consensus 170 ~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGG-slenR~r~~~eiv~aVr~avg~~~v~vrls~~~~-~-~ 246 (377)
T 2r14_A 170 QAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGG-SIENRARFPLEVVDAVAEVFGPERVGIRLTPFLE-L-F 246 (377)
T ss_dssp HHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSS-SHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC-C-T
T ss_pred HHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCc-chhhchHHHHHHHHHHHHHcCCCcEEEEeccccc-c-C
Confidence 345555666 99999998760 00000000011110 1223334445545555555542246667655311 0 0
Q ss_pred HHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 229 RIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 229 ~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
.+ .+.. -.+.+.+.++.|++.|.+-|.+|.
T Consensus 247 ~~---~~~~---~~~~~~~la~~le~~Gvd~i~v~~ 276 (377)
T 2r14_A 247 GL---TDDE---PEAMAFYLAGELDRRGLAYLHFNE 276 (377)
T ss_dssp TC---CCSC---HHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred CC---CCCC---CHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00 0111 135688999999999999898876
No 297
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=24.07 E-value=90 Score=29.71 Aligned_cols=71 Identities=15% Similarity=0.223 Sum_probs=48.4
Q ss_pred cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCCCchHHHhhcCCCchHHHH
Q 004907 165 FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGSLSDRIMSYYGDSPRGMVE 243 (724)
Q Consensus 165 vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GSL~~~il~~yg~t~~amVe 243 (724)
+..|++.||...... ...+.+.++++.+.++++.+.|+++|+ +|++ |++. .|++
T Consensus 90 a~~v~~~~g~~~~~~---------~~~~~~~~~~~~~~l~~l~~~a~~~gv--~l~lEn~~~----------~~~~---- 144 (254)
T 3ayv_A 90 ADRAVFHSGIPHGRT---------PEEALERALPLAEALGLVVRRARTLGV--RLLLENSHE----------PHPE---- 144 (254)
T ss_dssp CSEEEEECCCCTTCC---------HHHHHHTHHHHHHHTHHHHHHHHHHTC--EEEEECSSC----------SSGG----
T ss_pred CCEEEECCCCCcccc---------cccHHHHHHHHHHHHHHHHHHHhhcCC--EEEEcCCCC----------CCHH----
Confidence 778889998764311 113455678888889999999999997 4565 4532 1332
Q ss_pred HHHHHHHHHHHCCCCcEEEEE
Q 004907 244 SAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 244 SAle~~~i~e~~~F~diviS~ 264 (724)
+..+++++.| .++.+-+
T Consensus 145 ---~~~~l~~~v~-~~vg~~~ 161 (254)
T 3ayv_A 145 ---ALRPVLEAHA-GELGFCF 161 (254)
T ss_dssp ---GTHHHHHHHT-TSSEEEE
T ss_pred ---HHHHHHHhcC-cCEEEEE
Confidence 3456777778 7787777
No 298
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=24.03 E-value=54 Score=30.83 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=52.3
Q ss_pred CCcceeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeee-cceeeeecC
Q 004907 620 NTKTEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYV-GKTVVKRGI 698 (724)
Q Consensus 620 ~~kte~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~-gke~V~~~I 698 (724)
-.+..+.+||+|- |--+.++.+=|++.....++|+|- |+.|.+=.+.||. .++.++ .|
T Consensus 14 yarA~lEvC~~Ck--L~~~PeIk~FIk~d~~~y~~v~Vk------------------yi~Ga~P~LvL~D~~G~e~E-~I 72 (129)
T 2a2p_A 14 LARGRVETCGGCQ--LNRLKEVKAFVTEDIQLYHNLVMK------------------HLPGADPELVLLSRNYQELE-RI 72 (129)
T ss_dssp CCEEEEEEETTCC--CSTTHHHHHHTTTHHHHBTTEEEE------------------EESSCCCEEEEECSSSCCCE-EE
T ss_pred cceEEEEECCCcc--cccchhHHHHHhCchhhcCceeEE------------------EeCCCCCEEEEecCCCCEEE-Ee
Confidence 3577999999993 455677777777766667766554 5677677888887 334444 35
Q ss_pred ChhHH-HHHHHHHHHhccccC
Q 004907 699 AMEQA-TDALIQLIKDHGRWA 718 (724)
Q Consensus 699 peeea-vd~Li~lIk~~g~W~ 718 (724)
+-+.. .|++.++++++|=-.
T Consensus 73 ~Iekw~~d~I~efL~e~GF~r 93 (129)
T 2a2p_A 73 PLSQMTRDEINALVQELGFYR 93 (129)
T ss_dssp ECSSSCHHHHHHHHHHHTCCB
T ss_pred ecccCCHHHHHHHHHHcCCcc
Confidence 54443 457888888888643
No 299
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=23.98 E-value=1.8e+02 Score=27.14 Aligned_cols=68 Identities=18% Similarity=0.100 Sum_probs=48.3
Q ss_pred CcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeec
Q 004907 144 NIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTN 222 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN 222 (724)
++++-++...++.-+.+|.+. +|-| +.|+-- .++++.|+++|+|+=.|+
T Consensus 62 ~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~----------------------------~~~~~~~~~~g~~vi~g~- 111 (205)
T 1wa3_A 62 GAIIGAGTVTSVEQCRKAVESGAEFI-VSPHLD----------------------------EEISQFCKEKGVFYMPGV- 111 (205)
T ss_dssp TCEEEEESCCSHHHHHHHHHHTCSEE-ECSSCC----------------------------HHHHHHHHHHTCEEECEE-
T ss_pred CcEEEecccCCHHHHHHHHHcCCCEE-EcCCCC----------------------------HHHHHHHHHcCCcEECCc-
Confidence 467777665688888888887 9999 888721 247899999999985544
Q ss_pred cCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEE
Q 004907 223 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLF 262 (724)
Q Consensus 223 ~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~divi 262 (724)
.|++ .+..+.++|.+-|++
T Consensus 112 -------------~t~~--------e~~~a~~~Gad~vk~ 130 (205)
T 1wa3_A 112 -------------MTPT--------ELVKAMKLGHTILKL 130 (205)
T ss_dssp -------------CSHH--------HHHHHHHTTCCEEEE
T ss_pred -------------CCHH--------HHHHHHHcCCCEEEE
Confidence 2332 244567889886554
No 300
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}
Probab=23.94 E-value=2.6e+02 Score=30.85 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=47.2
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecC----ChhHHHHHHH
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKAS----NPVVMVQAYR 277 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaS----nv~~~v~Ayr 277 (724)
++.+.|+.||++|..++.-+ +-..+ .+| + .+-+++.++.+.+.|-+ .|++|-+ .|..+-+-.+
T Consensus 128 ni~~~i~~ak~~G~~v~~~i-~~~~~----~~~--~----~e~~~~~a~~l~~~Gad--~I~l~DT~G~~~P~~v~~lv~ 194 (464)
T 2nx9_A 128 NMQQALQAVKKMGAHAQGTL-CYTTS----PVH--N----LQTWVDVAQQLAELGVD--SIALKDMAGILTPYAAEELVS 194 (464)
T ss_dssp HHHHHHHHHHHTTCEEEEEE-ECCCC----TTC--C----HHHHHHHHHHHHHTTCS--EEEEEETTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEE-EeeeC----CCC--C----HHHHHHHHHHHHHCCCC--EEEEcCCCCCcCHHHHHHHHH
Confidence 46789999999999998665 21111 122 3 35667778888899987 5677744 4555555555
Q ss_pred HHHHHhhcCCCCcccc
Q 004907 278 LLVAEMYVHGWDYPLH 293 (724)
Q Consensus 278 lla~~m~~~g~dYPLH 293 (724)
.|.++ ++-|||
T Consensus 195 ~l~~~-----~~~~i~ 205 (464)
T 2nx9_A 195 TLKKQ-----VDVELH 205 (464)
T ss_dssp HHHHH-----CCSCEE
T ss_pred HHHHh-----cCCeEE
Confidence 55555 455554
No 301
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=23.90 E-value=2.4e+02 Score=28.57 Aligned_cols=89 Identities=11% Similarity=0.137 Sum_probs=53.3
Q ss_pred ccchHHHHHHhhhhhhhHHHHHHHHHhcCCc-EEEee--ccCCCchHHHhhc----CC---C---chHHH--HHHHHHHH
Q 004907 186 EYTDDEYQKELQHIEEVFSPLVEKCKKYGRA-VRIGT--NHGSLSDRIMSYY----GD---S---PRGMV--ESAFEFAR 250 (724)
Q Consensus 186 ~Ytdeey~~ele~I~e~~~~vv~~ake~g~~-IRIGv--N~GSL~~~il~~y----g~---t---~~amV--eSAle~~~ 250 (724)
.||++|++.-++-|+ .||+.|.. +=+|+ -.|.++...+++. ++ | +--++ ..-.+-++
T Consensus 69 ~Ys~~E~~~M~~Di~--------~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale 140 (224)
T 2bdq_A 69 VYNDLELRIMEEDIL--------RAVELESDALVLGILTSNNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSID 140 (224)
T ss_dssp CCCHHHHHHHHHHHH--------HHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHH
T ss_pred cCCHHHHHHHHHHHH--------HHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHH
Confidence 588888877666554 56777665 22242 3455665555443 21 1 12223 33355577
Q ss_pred HHHHCCCCcEEEEEecCC--hhHHHHHHHHHHHH
Q 004907 251 ICRKLDFHNFLFSMKASN--PVVMVQAYRLLVAE 282 (724)
Q Consensus 251 i~e~~~F~diviS~KaSn--v~~~v~Ayrlla~~ 282 (724)
.+.++||++|.=|=-+.+ ...-+...+.|.++
T Consensus 141 ~L~~lGv~rILTSG~~~~~~a~~g~~~L~~Lv~~ 174 (224)
T 2bdq_A 141 QLVALGFTRILLHGSSNGEPIIENIKHIKALVEY 174 (224)
T ss_dssp HHHHTTCCEEEECSCSSCCCGGGGHHHHHHHHHH
T ss_pred HHHHcCCCEEECCCCCCCCcHHHHHHHHHHHHHh
Confidence 788889999987755545 66667777667665
No 302
>3hjz_A Transaldolase B; parachlorococcus, marine, cyanobacteria; HET: MSE; 1.90A {Prochlorococcus marinus str}
Probab=23.80 E-value=2.6e+02 Score=29.73 Aligned_cols=58 Identities=16% Similarity=0.234 Sum_probs=47.3
Q ss_pred cCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEEecCChhHHHHHHHHHHHH
Q 004907 223 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH--NFLFSMKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 223 ~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~--diviS~KaSnv~~~v~Ayrlla~~ 282 (724)
.|-+|-.+..++..+.++||+.|.+.++++++.|.+ |++|-+-++ ..=++|-+.|.++
T Consensus 94 ~G~VS~EV~~~ls~d~e~~i~eA~~l~~l~~~~gi~~~nv~IKIP~T--~eGl~A~~~L~~~ 153 (334)
T 3hjz_A 94 SGRVSTEVDARLSFDTEATVKKARKLINLYKNFGIEKERILIKIAAT--WEGIKAAEILEKE 153 (334)
T ss_dssp SSCEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEECS--HHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCccCCHHHHHHHHHHHHHHhhhhCCCCCcEEEEeCCC--HHHHHHHHHHHHC
Confidence 566666666666778899999999999999999996 899888777 4678888888654
No 303
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A
Probab=23.78 E-value=1.3e+02 Score=30.17 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=41.1
Q ss_pred hhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC--CchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHH
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD--SPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYR 277 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~--t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayr 277 (724)
.+.+.++++.|+++|+|+ | +|. ..+-. ..++ +++...++ ++++.+.|-+=|++|. + ..++.++
T Consensus 124 ~~~~~~v~~~~~~~~~~v-I-i~~--~~~G~--~~~~~~s~~~i~~a----~~~a~~~GAD~vkt~~--~---~~~e~~~ 188 (263)
T 1w8s_A 124 FEELARIKRDAVKFDLPL-V-VES--FPRGG--KVVNETAPEIVAYA----ARIALELGADAMKIKY--T---GDPKTFS 188 (263)
T ss_dssp HHHHHHHHHHHHHHTCCE-E-EEE--CCCST--TCCCTTCHHHHHHH----HHHHHHHTCSEEEEEC--C---SSHHHHH
T ss_pred HHHHHHHHHHHHHcCCeE-E-EEe--eCCCC--ccccCCCHHHHHHH----HHHHHHcCCCEEEEcC--C---CCHHHHH
Confidence 344677899999999997 4 442 21100 0111 44433332 6788888888888883 2 2456677
Q ss_pred HHHHH
Q 004907 278 LLVAE 282 (724)
Q Consensus 278 lla~~ 282 (724)
.+.+.
T Consensus 189 ~~~~~ 193 (263)
T 1w8s_A 189 WAVKV 193 (263)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77765
No 304
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=23.69 E-value=6.9e+02 Score=26.63 Aligned_cols=104 Identities=17% Similarity=0.389 Sum_probs=67.4
Q ss_pred eeEEEeeeecCCCC-CeEEeeccCCCCCCHHHHHHHHHHHHH--------------------------------------
Q 004907 89 RTVMVGNVAIGSEH-PIRVQTMTTNDTKDVAGTVEEVMRIAD-------------------------------------- 129 (724)
Q Consensus 89 r~V~VG~V~IGG~~-PI~VQSMt~t~T~Dv~atv~Qi~~L~~-------------------------------------- 129 (724)
..|.||++.||+++ |..|==+....-.|.+-..+=|...++
T Consensus 5 ~~i~i~~~~iG~~~~~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~ 84 (349)
T 2wqp_A 5 NEFKIGNRSVGYNHEPLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIME 84 (349)
T ss_dssp CEEEETTEEEETTSCCEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHH
T ss_pred CeEEECCEEECCCCceEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHH
Confidence 34999999999998 556655555455555544433333333
Q ss_pred -------HHHHHHHHhhhcCCCcceeecCCCCHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhh
Q 004907 130 -------ACFEIKNSLVQKNYNIPLVADIHFAPSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEE 201 (724)
Q Consensus 130 -------a~~~I~~~L~~~~~~iPLVADIHF~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e 201 (724)
.++.+++ .++...+|+++.. ||..-+....+. ++-+-|--+|+-+
T Consensus 85 ~~~l~~e~~~~L~~--~~~~~Gi~~~st~-~d~~svd~l~~~~v~~~KI~S~~~~n------------------------ 137 (349)
T 2wqp_A 85 RCALNEEDEIKLKE--YVESKGMIFISTL-FSRAAALRLQRMDIPAYKIGSGECNN------------------------ 137 (349)
T ss_dssp HHCCCHHHHHHHHH--HHHHTTCEEEEEE-CSHHHHHHHHHHTCSCEEECGGGTTC------------------------
T ss_pred HhCCCHHHHHHHHH--HHHHhCCeEEEee-CCHHHHHHHHhcCCCEEEECcccccC------------------------
Confidence 1123333 2445668888876 566655555666 8999998888865
Q ss_pred hHHHHHHHHHhcCCcEEEee
Q 004907 202 VFSPLVEKCKKYGRAVRIGT 221 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGv 221 (724)
-++++++-+.|.||=+-+
T Consensus 138 --~~LL~~va~~gkPviLst 155 (349)
T 2wqp_A 138 --YPLIKLVASFGKPIILST 155 (349)
T ss_dssp --HHHHHHHHTTCSCEEEEC
T ss_pred --HHHHHHHHhcCCeEEEEC
Confidence 358888888999995544
No 305
>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET: LB2 MES; 1.37A {Oryza sativa japonica group} PDB: 3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A* 2rgl_A* 3scr_A* 3scs_A* 3scp_A* 3scq_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*
Probab=23.68 E-value=1.3e+02 Score=33.31 Aligned_cols=51 Identities=22% Similarity=0.253 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHH
Q 004907 204 SPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 254 (724)
Q Consensus 204 ~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~ 254 (724)
..+++.|+++||-.=|-..|=.|+..+.++||. ....+|+-=.++++.|-+
T Consensus 116 ~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~nr~~v~~F~~Ya~~~~~ 167 (481)
T 3f5l_A 116 NNLINYLLQKGITPYVNLYHYDLPLALEKKYGGWLNAKMADLFTEYADFCFK 167 (481)
T ss_dssp HHHHHHHHHTTCEEEEESCSSCCBHHHHHHHCGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999985 566788888888886643
No 306
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}
Probab=23.38 E-value=1.7e+02 Score=29.76 Aligned_cols=49 Identities=27% Similarity=0.213 Sum_probs=36.4
Q ss_pred hHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCC--CCcEEEEEecCChh
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLD--FHNFLFSMKASNPV 270 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~--F~diviS~KaSnv~ 270 (724)
.+.++++.++++|+.+.|-+| |++ ++ .++.+.+.| ...+.||+++.|..
T Consensus 158 ~l~~ll~~~~~~g~~i~l~TN-G~~-~e------------------~l~~L~~~g~~~~~l~isld~~~~e 208 (342)
T 2yx0_A 158 YMGDLVEEFHKRGFTTFIVTN-GTI-PE------------------RLEEMIKEDKLPTQLYVSITAPDIE 208 (342)
T ss_dssp THHHHHHHHHHTTCEEEEEEC-SCC-HH------------------HHHHHHHTTCCCSEEEEEECCSSHH
T ss_pred hHHHHHHHHHHCCCcEEEEcC-CCc-HH------------------HHHHHHhcCCCCCEEEEEccCCCHH
Confidence 477899999999998888776 555 22 334455656 78999999998753
No 307
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=23.25 E-value=1e+02 Score=32.74 Aligned_cols=98 Identities=14% Similarity=0.169 Sum_probs=61.9
Q ss_pred HHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCchHHHh--------hcCCCchHHHHHHHHHHHHHHH-CCCCcEEEE
Q 004907 194 KELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIMS--------YYGDSPRGMVESAFEFARICRK-LDFHNFLFS 263 (724)
Q Consensus 194 ~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il~--------~yg~t~~amVeSAle~~~i~e~-~~F~diviS 263 (724)
+|++.|.+.|..-.+.|++.|-- |=|=.-||-|=..+|+ +||.+.+.=..-++|-++-+++ .|= + .|+
T Consensus 154 ~eI~~ii~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~-~-~v~ 231 (361)
T 3gka_A 154 DEIPGVVAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSA-A-RVG 231 (361)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCG-G-GEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCC-C-eEE
Confidence 46667777888888888888854 5555556666554444 4675554444455555554443 342 3 567
Q ss_pred EecCCh--------hHHHHHHHHHHHHhhcCCCCccccc
Q 004907 264 MKASNP--------VVMVQAYRLLVAEMYVHGWDYPLHL 294 (724)
Q Consensus 264 ~KaSnv--------~~~v~Ayrlla~~m~~~g~dYPLHL 294 (724)
+|-|-. ....+-+..|++++++.|.|| ||+
T Consensus 232 vRls~~~~~~g~~~~~~~~~~~~la~~l~~~Gvd~-i~v 269 (361)
T 3gka_A 232 VHLAPRGDAHTMGDSDPAATFGHVARELGRRRIAF-LFA 269 (361)
T ss_dssp EEECTTCCSSSCCCSCHHHHHHHHHHHHHHTTCSE-EEE
T ss_pred EecccccccCCCCCCCcHHHHHHHHHHHHHcCCCE-EEE
Confidence 776631 123566778888999999997 554
No 308
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=23.23 E-value=37 Score=29.43 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=36.7
Q ss_pred cCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeee--cCChhHHH
Q 004907 627 SCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKR--GIAMEQAT 704 (724)
Q Consensus 627 SCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~--~Ipeeeav 704 (724)
.||.|-+.. ....++.+. ++++++..+-|--| .+. -..||+.+ .|- +.+|++++.+.+ +...+++.
T Consensus 48 wC~~C~~~~----p~l~~l~~~---~~~v~~~~vd~d~~--~~l-~~~~~v~~-~Pt-~~i~~~G~~~~~~~G~~~~~l~ 115 (125)
T 1r26_A 48 WCGPCKTIE----RPMEKIAYE---FPTVKFAKVDADNN--SEI-VSKCRVLQ-LPT-FIIARSGKMLGHVIGANPGMLR 115 (125)
T ss_dssp TCHHHHHTH----HHHHHHHHH---CTTSEEEEEETTTC--HHH-HHHTTCCS-SSE-EEEEETTEEEEEEESSCHHHHH
T ss_pred cCHhHHHHH----HHHHHHHHH---CCCCEEEEEECCCC--HHH-HHHcCCCc-ccE-EEEEeCCeEEEEEeCCCHHHHH
Confidence 366664432 223333333 35677766544211 011 12477766 585 667887777654 33444444
Q ss_pred HHHHHHHH
Q 004907 705 DALIQLIK 712 (724)
Q Consensus 705 d~Li~lIk 712 (724)
+.|.++++
T Consensus 116 ~~l~~~l~ 123 (125)
T 1r26_A 116 QKLRDIIK 123 (125)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 44444443
No 309
>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A
Probab=23.16 E-value=25 Score=32.13 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=25.8
Q ss_pred ceeeecCCCceeEeeecceeeee---cCChhHHHHHHHHHHHh
Q 004907 674 DFGYVGGAPGKIDLYVGKTVVKR---GIAMEQATDALIQLIKD 713 (724)
Q Consensus 674 D~GyvGg~pGki~Ly~gke~V~~---~Ipeeeavd~Li~lIk~ 713 (724)
+||+.+ .|..+.+.+.++++.+ .++.+++.+.|.+++++
T Consensus 127 ~~~v~~-~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~ 168 (176)
T 3kh7_A 127 DLGVYG-APETYLIDKQGIIRHKIVGVVDQKVWREQLAPLYQQ 168 (176)
T ss_dssp HHTCCS-SCEEEEECTTCBEEEEEESCCCHHHHHHHTHHHHHH
T ss_pred HcCCCC-CCeEEEECCCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 467665 4766666666777665 25677777777777764
No 310
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Probab=23.02 E-value=1.7e+02 Score=31.02 Aligned_cols=99 Identities=17% Similarity=0.248 Sum_probs=61.6
Q ss_pred HHhhhhhhhHHHHHHHHHhcCCc-EEEeeccCCCchHHH--------hhcCCCchHHHHHHHHHHHHHHH-CCCCcEEEE
Q 004907 194 KELQHIEEVFSPLVEKCKKYGRA-VRIGTNHGSLSDRIM--------SYYGDSPRGMVESAFEFARICRK-LDFHNFLFS 263 (724)
Q Consensus 194 ~ele~I~e~~~~vv~~ake~g~~-IRIGvN~GSL~~~il--------~~yg~t~~amVeSAle~~~i~e~-~~F~diviS 263 (724)
+|++.+.+.|..-.+.|++.|.- |-|=.-||-|=..+| .+||.+.+.=..-++|-++-+++ .|-+ .|+
T Consensus 159 ~eI~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~--~v~ 236 (377)
T 2r14_A 159 DEIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPE--RVG 236 (377)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGG--GEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCC--cEE
Confidence 35566667777777788887753 666555676644444 35776555555556666654443 4533 567
Q ss_pred EecCCh--------hHHHHHHHHHHHHhhcCCCCcccccc
Q 004907 264 MKASNP--------VVMVQAYRLLVAEMYVHGWDYPLHLG 295 (724)
Q Consensus 264 ~KaSnv--------~~~v~Ayrlla~~m~~~g~dYPLHLG 295 (724)
+|-|-. ....+-+..|++++++.|.|| ||+.
T Consensus 237 vrls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~-i~v~ 275 (377)
T 2r14_A 237 IRLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAY-LHFN 275 (377)
T ss_dssp EEECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSE-EEEE
T ss_pred EEeccccccCCCCCCCCHHHHHHHHHHHHHcCCCE-EEEe
Confidence 775421 124566778888888999997 6663
No 311
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}
Probab=22.99 E-value=93 Score=32.59 Aligned_cols=133 Identities=11% Similarity=0.084 Sum_probs=74.6
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCCH-------HHH--HHHhhh-cCccc--cCCCCCcchhhhhhccccchHHHHHHhh
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFAP-------SVA--LRVAEC-FDKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQ 197 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~~-------~lA--l~a~~~-vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ele 197 (724)
-++..++.| +++++++.+=|+|-. +++ .+|++. +|-|= ||-|.+-+++ .+
T Consensus 97 ~V~~a~~~L--~~s~V~V~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~lk~g~----------------~~ 158 (288)
T 3oa3_A 97 YVSRAVQYL--QGTQVGVTCVIGFHEGTYSTDQKVSEAKRAMQNGASELDMVMNYPWLSEKR----------------YT 158 (288)
T ss_dssp GHHHHHHHT--TTSSCEEEEEESTTTSCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTC----------------HH
T ss_pred HHHHHHHHc--CCCCCeEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehhhhcCCc----------------HH
Confidence 445666655 467788887788832 332 256665 77776 7766653322 12
Q ss_pred hhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE-ecCChhHHHHHH
Q 004907 198 HIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM-KASNPVVMVQAY 276 (724)
Q Consensus 198 ~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~-KaSnv~~~v~Ay 276 (724)
.+.+.+..++++|.+. .+.+=+-.|-| +.+.++ .-.+++.+.|-+=|+-|- ++ ....+++..
T Consensus 159 ~v~~eI~~V~~a~~~~--~lKVIlEt~~L----------t~eei~----~A~~ia~eaGADfVKTSTGf~-~~GAT~edv 221 (288)
T 3oa3_A 159 DVFQDIRAVRLAAKDA--ILKVILETSQL----------TADEII----AGCVLSSLAGADYVKTSTGFN-GPGASIENV 221 (288)
T ss_dssp HHHHHHHHHHHHTTTS--EEEEECCGGGC----------CHHHHH----HHHHHHHHTTCSEEECCCSSS-SCCCCHHHH
T ss_pred HHHHHHHHHHHHhcCC--CceEEEECCCC----------CHHHHH----HHHHHHHHcCCCEEEcCCCCC-CCCCCHHHH
Confidence 3445566788888763 23333333333 333333 346788899998887774 22 234456666
Q ss_pred HHHHHHhhcCCCCccccccccccCC
Q 004907 277 RLLVAEMYVHGWDYPLHLGVTEAGE 301 (724)
Q Consensus 277 rlla~~m~~~g~dYPLHLGVTEAG~ 301 (724)
++|.+-.+. +.-.+||==||.
T Consensus 222 ~lmr~~v~~----~g~~v~VKAAGG 242 (288)
T 3oa3_A 222 SLMSAVCDS----LQSETRVKASGG 242 (288)
T ss_dssp HHHHHHHHH----SSSCCEEEEESS
T ss_pred HHHHHHHHH----hCCCceEEEeCC
Confidence 666665211 133466655553
No 312
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=22.97 E-value=28 Score=40.83 Aligned_cols=19 Identities=32% Similarity=0.565 Sum_probs=16.9
Q ss_pred ccCCcceeecCCCCccccc
Q 004907 618 MRNTKTEYVSCPSCGRTLF 636 (724)
Q Consensus 618 ~R~~kte~ISCPsCGRTlf 636 (724)
-|.++.+-||||.||..++
T Consensus 176 ~RRfhAqp~aC~~CGP~l~ 194 (761)
T 3vth_A 176 DRRFHAQPVACFDCGPSLS 194 (761)
T ss_dssp STTTTCTTCCCTTTSCCEE
T ss_pred cccccCCCCcCCccCCeeE
Confidence 4889999999999999874
No 313
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=22.82 E-value=75 Score=32.38 Aligned_cols=56 Identities=23% Similarity=0.348 Sum_probs=43.2
Q ss_pred cC-CCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccccccccc
Q 004907 234 YG-DSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEA 299 (724)
Q Consensus 234 yg-~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEA 299 (724)
|| .+.+.+.+.+++.++.|++.|.+-|+|.| |..... ++..|.++ ++.|+ +||.|+
T Consensus 63 yG~~s~~~i~~~~~~~~~~L~~~g~d~IVIAC---NTas~~-~l~~lr~~-----~~iPV-igiiep 119 (290)
T 2vvt_A 63 YGPRPAEQVVQFTWEMADFLLKKRIKMLVIAC---NTATAV-ALEEIKAA-----LPIPV-VGVILP 119 (290)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHTTTCSEEEECC---HHHHHH-HHHHHHHH-----CSSCE-EESSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeC---cchhHH-HHHHHHHh-----CCCCE-EcccHH
Confidence 67 46788899999999999999999999999 654333 67888888 67773 555444
No 314
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=22.29 E-value=4e+02 Score=25.40 Aligned_cols=86 Identities=15% Similarity=0.145 Sum_probs=51.4
Q ss_pred CHHHHHHHh-hh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHH
Q 004907 154 APSVALRVA-EC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIM 231 (724)
Q Consensus 154 ~~~lAl~a~-~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il 231 (724)
++.-+++.+ +. ++.|=|.+.+.... . .+.+.++.+.++++|+.+-... + ++.. .
T Consensus 18 ~~~~~l~~~~~~G~~~vEl~~~~~~~~---------~-----------~~~~~~~~~~l~~~gl~~~~~~--~-~~~~-~ 73 (290)
T 2qul_A 18 DFPATAKRIAGLGFDLMEISLGEFHNL---------S-----------DAKKRELKAVADDLGLTVMCCI--G-LKSE-Y 73 (290)
T ss_dssp CHHHHHHHHHHTTCSEEEEESTTGGGS---------C-----------HHHHHHHHHHHHHHTCEEEEEE--E-ECGG-G
T ss_pred cHHHHHHHHHHhCCCEEEEecCCcccc---------c-----------hhhHHHHHHHHHHcCCceEEec--C-CCCC-C
Confidence 344444333 44 88888877654220 0 1235667788999999875521 1 1110 0
Q ss_pred hhcC-CCc---hHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 232 SYYG-DSP---RGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 232 ~~yg-~t~---~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
..+ +.+ +..++...+.++++.++|-..|++++
T Consensus 74 -~l~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~ 109 (290)
T 2qul_A 74 -DFASPDKSVRDAGTEYVKRLLDDCHLLGAPVFAGLT 109 (290)
T ss_dssp -CTTCSCHHHHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeec
Confidence 111 111 45677888899999999999998765
No 315
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=22.25 E-value=3e+02 Score=26.23 Aligned_cols=78 Identities=10% Similarity=-0.034 Sum_probs=48.5
Q ss_pred hHHHHHHHHHhcCC-cEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHH
Q 004907 202 VFSPLVEKCKKYGR-AVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLV 280 (724)
Q Consensus 202 ~~~~vv~~ake~g~-~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla 280 (724)
.++++.+.++++|+ .+ .+ |++..-.+.+ ....-+.-++...+.++++.++|-..+++..=..+...+++.++.++
T Consensus 50 ~~~~~~~~~~~~gl~~~--~~-h~~~~~~l~s-~~~~r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~~~~~~~~~l~~l~ 125 (270)
T 3aam_A 50 EVEAFRALREASGGLPA--VI-HASYLVNLGA-EGELWEKSVASLADDLEKAALLGVEYVVVHPGSGRPERVKEGALKAL 125 (270)
T ss_dssp HHHHHHHHHHHTTCCCE--EE-ECCTTCCTTC-SSTHHHHHHHHHHHHHHHHHHHTCCEEEECCCBSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCceE--EE-ecCcccCCCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHH
Confidence 35667788999999 55 33 2221111111 01122456788888999999999988887432223366788888887
Q ss_pred HHh
Q 004907 281 AEM 283 (724)
Q Consensus 281 ~~m 283 (724)
+..
T Consensus 126 ~~a 128 (270)
T 3aam_A 126 RLA 128 (270)
T ss_dssp HHH
T ss_pred Hhh
Confidence 774
No 316
>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A
Probab=22.02 E-value=2.1e+02 Score=28.32 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=74.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHH---------------HHHHHHHHhhhcCCCcceeecCCCC--HH----HHHHHhhh-cC
Q 004907 109 MTTNDTKDVAGTVEEVMRIAD---------------ACFEIKNSLVQKNYNIPLVADIHFA--PS----VALRVAEC-FD 166 (724)
Q Consensus 109 Mt~t~T~Dv~atv~Qi~~L~~---------------a~~~I~~~L~~~~~~iPLVADIHF~--~~----lAl~a~~~-vd 166 (724)
+..-|..+.+..++.+.++.. .. .+.+.|++. ..+++.|.||- |. .+..++++ +|
T Consensus 18 ilalD~~~l~~~~~~~~~~~~~v~~~Kv~~d~~~~~G~-~~v~~lr~~--~~~v~lD~kl~Dip~t~~~~i~~~~~~Gad 94 (245)
T 1eix_A 18 VVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGP-QFVRELQQR--GFDIFLDLKFHDIPNTAAHAVAAAADLGVW 94 (245)
T ss_dssp EEEECCSSHHHHHHHHTTSCTTTCEEEEEHHHHHHHHH-HHHHHHHHT--TCCEEEEEEECSCHHHHHHHHHHHHHHTCS
T ss_pred EEEECCCCHHHHHHHHHHhCccCcEEEEcHHHHHHhCH-HHHHHHHHC--CCcEEEEeeccccHHHHHHHHHHHHhCCCC
Confidence 334455666666665555442 22 223334443 46788999997 43 33355555 77
Q ss_pred ccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCC--cEEEeeccC-CCchHHHhhcCCCchHHHH
Q 004907 167 KIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGR--AVRIGTNHG-SLSDRIMSYYGDSPRGMVE 243 (724)
Q Consensus 167 kiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~--~IRIGvN~G-SL~~~il~~yg~t~~amVe 243 (724)
-|=++|-- |. . .+.++++.++++|. +-=|||+-- |.+..-++.+|-+ ..+++
T Consensus 95 ~vTvH~~~-g~-~----------------------~l~~~~~~~~~~G~~~~~~l~v~~~ts~~~~~l~~~~~~-~~~~d 149 (245)
T 1eix_A 95 MVNVHASG-GA-R----------------------MMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMT-LSPAD 149 (245)
T ss_dssp EEEEBGGG-CH-H----------------------HHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTCC-SCHHH
T ss_pred EEEEeccC-CH-H----------------------HHHHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHhccC-CCHHH
Confidence 77777631 21 1 25678889999886 423577642 3555667777521 12345
Q ss_pred HHHHHHHHHHHCCCCcEEEEE
Q 004907 244 SAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 244 SAle~~~i~e~~~F~diviS~ 264 (724)
..+...+...+.|+.-++.|.
T Consensus 150 ~Vl~ma~~~~~~G~~g~V~~~ 170 (245)
T 1eix_A 150 YAERLAALTQKCGLDGVVCSA 170 (245)
T ss_dssp HHHHHHHHHHHTTCSEEECCG
T ss_pred HHHHHHHHHHHcCCCeEEeCH
Confidence 555555557789998877764
No 317
>3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP}
Probab=22.00 E-value=2.9e+02 Score=29.55 Aligned_cols=86 Identities=10% Similarity=0.096 Sum_probs=59.7
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCC-cc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWD-YP 291 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~d-YP 291 (724)
.+++|||=.|.| + + ++.|+++++.|++.|..-|-=-+.. .-++.++.|.++ .+ .|
T Consensus 228 ~d~~l~vDan~~-~----------~----~~eai~~~~~L~~~~i~~iEqP~~~----~d~~~~~~l~~~-----~~~iP 283 (428)
T 3bjs_A 228 DEVDILTDANTA-Y----------T----MADARRVLPVLAEIQAGWLEEPFAC----NDFASYREVAKI-----TPLVP 283 (428)
T ss_dssp TTSEEEEECTTC-C----------C----HHHHHHHHHHHHHTTCSCEECCSCT----TCHHHHHHHTTT-----CSSSC
T ss_pred CCCEEEEECCCC-C----------C----HHHHHHHHHHHHhcCCCEEECCCCc----cCHHHHHHHHHh-----CCCCc
Confidence 368899988733 3 2 2568889999999988655433322 236677777766 55 66
Q ss_pred ccccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCC
Q 004907 292 LHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTE 331 (724)
Q Consensus 292 LHLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~ 331 (724)
+=. ++.+.+.-.+-.++.+|--|-|.+-++-
T Consensus 284 Ia~---------dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 314 (428)
T 3bjs_A 284 IAA---------GENHYTRFEFGQMLDAGAVQVWQPDLSK 314 (428)
T ss_dssp EEE---------CTTCCSHHHHHHHHTTCCEEEECCBTTT
T ss_pred EEc---------CCCcCCHHHHHHHHHhCCCCEEEeCccc
Confidence 532 4566777888999999999988776654
No 318
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=21.94 E-value=32 Score=31.12 Aligned_cols=14 Identities=36% Similarity=1.156 Sum_probs=12.3
Q ss_pred CcceeecCCCCccc
Q 004907 621 TKTEYVSCPSCGRT 634 (724)
Q Consensus 621 ~kte~ISCPsCGRT 634 (724)
.+.+|..||.|||.
T Consensus 66 ~~s~~~~C~nC~R~ 79 (99)
T 3mhs_C 66 ESSQYIHCENCGRD 79 (99)
T ss_dssp TTSCEEECTTTCCE
T ss_pred cCCCeEECCCCCCC
Confidence 46799999999996
No 319
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=21.94 E-value=94 Score=29.90 Aligned_cols=47 Identities=19% Similarity=0.237 Sum_probs=33.2
Q ss_pred HHHHHHHhhh--cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEEee-ccCC
Q 004907 155 PSVALRVAEC--FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRIGT-NHGS 225 (724)
Q Consensus 155 ~~lAl~a~~~--vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRIGv-N~GS 225 (724)
.+-+++.++. +..|++.||.+... ..++++.+.|+++|+ +|++ ||+.
T Consensus 86 ~~~~i~~A~~lGa~~v~~~~g~~~~~----------------------~~l~~l~~~a~~~Gv--~l~lEn~~~ 135 (264)
T 1yx1_A 86 LEPTLRRAEACGAGWLKVSLGLLPEQ----------------------PDLAALGRRLARHGL--QLLVENDQT 135 (264)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECCCSS----------------------CCHHHHHHHHTTSSC--EEEEECCSS
T ss_pred HHHHHHHHHHcCCCEEEEecCCCCcH----------------------HHHHHHHHHHHhcCC--EEEEecCCC
Confidence 4555555553 99999999876431 157889999999986 5676 6653
No 320
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=21.92 E-value=2.3e+02 Score=27.33 Aligned_cols=92 Identities=15% Similarity=0.140 Sum_probs=57.2
Q ss_pred hHHHHHHHHHhcCCcEEEeecc--CCCchHHH-h--hcC----CCchHHHHHHHHHHHHHHHCCCCcEEEEE---ec---
Q 004907 202 VFSPLVEKCKKYGRAVRIGTNH--GSLSDRIM-S--YYG----DSPRGMVESAFEFARICRKLDFHNFLFSM---KA--- 266 (724)
Q Consensus 202 ~~~~vv~~ake~g~~IRIGvN~--GSL~~~il-~--~yg----~t~~amVeSAle~~~i~e~~~F~diviS~---Ka--- 266 (724)
.++++.+.++++|+.+-....+ |..-.++. . ..| ..-+..++...+.++++.++|-..|++.. ..
T Consensus 52 ~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~ 131 (290)
T 3tva_A 52 HAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIGFVPESSS 131 (290)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTTS
T ss_pred HHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccch
Confidence 3667888999999987543211 11000100 0 011 12356788889999999999999998842 10
Q ss_pred CChhHHHHHHHHHHHHhhcCCCCcccc
Q 004907 267 SNPVVMVQAYRLLVAEMYVHGWDYPLH 293 (724)
Q Consensus 267 Snv~~~v~Ayrlla~~m~~~g~dYPLH 293 (724)
.....+++..+.+++...+.|+..-+|
T Consensus 132 ~~~~~~~~~l~~l~~~a~~~Gv~l~lE 158 (290)
T 3tva_A 132 PDYSELVRVTQDLLTHAANHGQAVHLE 158 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEe
Confidence 123456778888888877667655444
No 321
>3m16_A Transaldolase; dimer, molecular replac swiss-model, structural genomics, PSI-2, protein structure initiative; 2.79A {Oleispira antarctica} SCOP: c.1.10.1
Probab=21.82 E-value=3.1e+02 Score=29.18 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=46.4
Q ss_pred cCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCC--cEEEEEecCChhHHHHHHHHHHHH
Q 004907 223 HGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFH--NFLFSMKASNPVVMVQAYRLLVAE 282 (724)
Q Consensus 223 ~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~--diviS~KaSnv~~~v~Ayrlla~~ 282 (724)
.|-+|-.+..++..+.++||+.|.+.++++++.|.+ ||+|-+-++ ..=++|-+.|.++
T Consensus 98 ~G~VS~EV~~~ls~d~e~~i~eA~~l~~l~~~~gi~~~nv~IKIP~T--~eGl~A~~~L~~~ 157 (329)
T 3m16_A 98 PGVISTEVDARLSFDTQATVAKARKLIRLYQDAGIDSDRILIKIAST--WEGIQAAKILEAE 157 (329)
T ss_dssp SSCEEEECCGGGTTCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEECS--HHHHHHHHHHHHT
T ss_pred CCcEEEEECCcccCCHHHHHHHHHHHHHhhhhhCCCCCcEEEEeCCC--HHHHHHHHHHHHC
Confidence 455665666666668899999999999999999996 899888777 4678888888654
No 322
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center for structural GENO infectious diseases, csgid; 2.00A {Bacillus anthracis str} PDB: 3kz2_A
Probab=21.72 E-value=2.2e+02 Score=29.79 Aligned_cols=50 Identities=22% Similarity=0.255 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCccccccccccCC
Q 004907 242 VESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLHLGVTEAGE 301 (724)
Q Consensus 242 VeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLHLGVTEAG~ 301 (724)
.+.|++-++.+++.|=+=|.+-... ..+-++.+++. ++-|+-.-+||-|.
T Consensus 174 ~~~ai~Ra~ay~eAGAD~i~~e~~~-----~~~~~~~i~~~-----~~~P~~~n~~~~g~ 223 (305)
T 3ih1_A 174 LDEAIERANAYVKAGADAIFPEALQ-----SEEEFRLFNSK-----VNAPLLANMTEFGK 223 (305)
T ss_dssp HHHHHHHHHHHHHHTCSEEEETTCC-----SHHHHHHHHHH-----SCSCBEEECCTTSS
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCC-----CHHHHHHHHHH-----cCCCEEEeecCCCC
Confidence 6889999999999999988885432 24567778888 78899656788653
No 323
>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}
Probab=21.63 E-value=62 Score=27.56 Aligned_cols=79 Identities=13% Similarity=0.145 Sum_probs=43.2
Q ss_pred ceeecCCCCccccccHHHHHHHHHHHhcCCCCcEEEEeeeeecCCCCCC-CCceeeecCCCceeEeeecceeeeecCChh
Q 004907 623 TEYVSCPSCGRTLFDLQEISAEIREKTSHLPGVSIAIMGCIVNGPGEMA-DADFGYVGGAPGKIDLYVGKTVVKRGIAME 701 (724)
Q Consensus 623 te~ISCPsCGRTlfDLq~~~~~Ik~~t~hLkgvkIAVMGCIVNGPGEma-dAD~GyvGg~pGki~Ly~gke~V~~~Ipee 701 (724)
++|-+ |-||.+ -.+.....++. ..+++++++- ||.--... -..||+-| -| .+.+|++++.+.+-.-.
T Consensus 25 v~F~a-~wC~~C-~~~~p~~~~~~---~~~~~~~~~~----vd~d~~~~l~~~~~V~~-~P-T~~~~~~G~~v~~~~G~- 92 (105)
T 3zzx_A 25 IDFYA-TWCGPC-KMIAPKLEELS---QSMSDVVFLK----VDVDECEDIAQDNQIAC-MP-TFLFMKNGQKLDSLSGA- 92 (105)
T ss_dssp EEEEC-TTCHHH-HHHHHHHHHHH---HHCTTEEEEE----EETTTCHHHHHHTTCCB-SS-EEEEEETTEEEEEEESC-
T ss_pred EEEEC-CCCCCc-cCCCcchhhhh---hccCCeEEEE----EecccCHHHHHHcCCCe-ec-EEEEEECCEEEEEEeCc-
Confidence 45555 666655 22333333333 3456666554 44321111 13578776 57 57789988888763332
Q ss_pred HHHHHHHHHHHhc
Q 004907 702 QATDALIQLIKDH 714 (724)
Q Consensus 702 eavd~Li~lIk~~ 714 (724)
. .++|.++|++|
T Consensus 93 ~-~~~l~~~i~k~ 104 (105)
T 3zzx_A 93 N-YDKLLELVEKN 104 (105)
T ss_dssp C-HHHHHHHHHHH
T ss_pred C-HHHHHHHHHhc
Confidence 1 35688888775
No 324
>1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1
Probab=21.52 E-value=4.5e+02 Score=27.07 Aligned_cols=84 Identities=17% Similarity=0.120 Sum_probs=59.9
Q ss_pred CCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHHHHHHhhcCCCCcccc
Q 004907 214 GRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRLLVAEMYVHGWDYPLH 293 (724)
Q Consensus 214 g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrlla~~m~~~g~dYPLH 293 (724)
++++|+=.|.| . + ++.|+++++.|++.|..-|-==+.. .-++.++.|.++ .+.|+-
T Consensus 188 ~~~l~vDan~~-~----------~----~~~a~~~~~~l~~~~i~~iEqP~~~----~~~~~~~~l~~~-----~~ipIa 243 (370)
T 1nu5_A 188 RASVRVDVNQG-W----------D----EQTASIWIPRLEEAGVELVEQPVPR----ANFGALRRLTEQ-----NGVAIL 243 (370)
T ss_dssp GCEEEEECTTC-C----------C----HHHHHHHHHHHHHHTCCEEECCSCT----TCHHHHHHHHHH-----CSSEEE
T ss_pred CCEEEEECCCC-C----------C----HHHHHHHHHHHHhcCcceEeCCCCc----ccHHHHHHHHHh-----CCCCEE
Confidence 58899999843 2 2 2668889999999887644311221 346778888887 667764
Q ss_pred ccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecC
Q 004907 294 LGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLT 330 (724)
Q Consensus 294 LGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT 330 (724)
. ++.+.+.-.+-.++..|--|-|.+-++
T Consensus 244 ~---------dE~~~~~~~~~~~i~~~~~d~v~ik~~ 271 (370)
T 1nu5_A 244 A---------DESLSSLSSAFELARDHAVDAFSLKLC 271 (370)
T ss_dssp E---------STTCCSHHHHHHHHHTTCCSEEEECHH
T ss_pred e---------CCCCCCHHHHHHHHHhCCCCEEEEchh
Confidence 3 345778888999999999999988554
No 325
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1
Probab=21.40 E-value=3.1e+02 Score=27.61 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=65.8
Q ss_pred HHHHHhhhcCC-CcceeecCCCCH-------HH--HHHHhhh-cCccc--cCCCCCcchhhhhhccccchHHHHHHhhhh
Q 004907 133 EIKNSLVQKNY-NIPLVADIHFAP-------SV--ALRVAEC-FDKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQHI 199 (724)
Q Consensus 133 ~I~~~L~~~~~-~iPLVADIHF~~-------~l--Al~a~~~-vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ele~I 199 (724)
..++.|. ++ ++.+.+=+-|-. ++ +.+|++. +|.|= ||.|.+.+ .+
T Consensus 61 ~a~~~l~--~~~~v~v~tvigFP~G~~~~~~k~~e~~~Av~~GAdEID~vinig~~~~--------------------~v 118 (234)
T 1n7k_A 61 VKISGLA--EKLGVKLCSVIGFPLGQAPLEVKLVEAQTVLEAGATELDVVPHLSLGPE--------------------AV 118 (234)
T ss_dssp HHHHHHH--HHHTCCEEEEESTTTCCSCHHHHHHHHHHHHHHTCCEEEECCCGGGCHH--------------------HH
T ss_pred eeehHhC--CCCCceEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccchHHHH--------------------HH
Confidence 4455443 33 566666565522 22 2256665 66665 56654421 34
Q ss_pred hhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE-ecCChhHHHHHHHH
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM-KASNPVVMVQAYRL 278 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~-KaSnv~~~v~Ayrl 278 (724)
.+.+..++++|.++|.|+.+=.-.+-|+ ++.. ..-.+++.+.|-+=|+-|- +..-...+++..++
T Consensus 119 ~~ei~~v~~a~~~~g~~lKvIlEt~~L~----------~e~i----~~a~ria~eaGADfVKTsTG~~~~~gAt~~dv~l 184 (234)
T 1n7k_A 119 YREVSGIVKLAKSYGAVVKVILEAPLWD----------DKTL----SLLVDSSRRAGADIVKTSTGVYTKGGDPVTVFRL 184 (234)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECCGGGSC----------HHHH----HHHHHHHHHTTCSEEESCCSSSCCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCeEEEEEeccCCC----------HHHH----HHHHHHHHHhCCCEEEeCCCCCCCCCCCHHHHHH
Confidence 5568889999999999987666666553 2222 2356788899988776663 22102335555555
Q ss_pred --HHHH
Q 004907 279 --LVAE 282 (724)
Q Consensus 279 --la~~ 282 (724)
|.+.
T Consensus 185 ~~m~~~ 190 (234)
T 1n7k_A 185 ASLAKP 190 (234)
T ss_dssp HHHHGG
T ss_pred HHHHHH
Confidence 5544
No 326
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=21.36 E-value=1.4e+02 Score=29.99 Aligned_cols=60 Identities=13% Similarity=0.276 Sum_probs=45.8
Q ss_pred hhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHHH
Q 004907 199 IEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYRL 278 (724)
Q Consensus 199 I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayrl 278 (724)
+....+.++.+|+++|++. |+..+ +| +.++.+.++||+-+.++. |+..+.++.+.
T Consensus 195 v~~a~~~iv~aa~aaG~~~--~v~~~------------d~--------~~a~~~~~~G~~~~s~~~---d~~~l~~~~~~ 249 (267)
T 2vws_A 195 VQRIIETSIRRIRAAGKAA--GFLAV------------AP--------DMAQQCLAWGANFVAVGV---DTMLYSDALDQ 249 (267)
T ss_dssp HHHHHHHHHHHHHHTTCEE--EEECS------------SH--------HHHHHHHHTTCCEEEEEE---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCeE--EEecC------------CH--------HHHHHHHHCCCCEEEEch---HHHHHHHHHHH
Confidence 4555678999999999997 66221 23 367788899999887775 88888888888
Q ss_pred HHHHh
Q 004907 279 LVAEM 283 (724)
Q Consensus 279 la~~m 283 (724)
+.+.+
T Consensus 250 ~~~~~ 254 (267)
T 2vws_A 250 RLAMF 254 (267)
T ss_dssp HHHTT
T ss_pred HHHHH
Confidence 88774
No 327
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*
Probab=21.34 E-value=1.6e+02 Score=30.42 Aligned_cols=131 Identities=17% Similarity=0.169 Sum_probs=75.5
Q ss_pred HHHHHHHHhhhcCCCcceeecCCCCH-------HHH--HHHhhh-cCccc--cCCCCCcchhhhhhccccchHHHHHHhh
Q 004907 130 ACFEIKNSLVQKNYNIPLVADIHFAP-------SVA--LRVAEC-FDKIR--VNPGNFADRRAQFEQLEYTDDEYQKELQ 197 (724)
Q Consensus 130 a~~~I~~~L~~~~~~iPLVADIHF~~-------~lA--l~a~~~-vdkiR--INPGNig~~~k~f~~~~Ytdeey~~ele 197 (724)
-++..++.| +++++.+.+=|+|-. +++ .+|++. +|-|= ||-|.+-+++ .+
T Consensus 82 ~V~~a~~~L--~gs~v~v~tVigFP~G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~----------------~~ 143 (260)
T 3r12_A 82 YVKLAREEL--EGTDVKVVTVVGFPLGANETRTKAHEAIFAVESGADEIDMVINVGMLKAKE----------------WE 143 (260)
T ss_dssp GHHHHHHHH--TTSCCEEEEEESTTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTC----------------HH
T ss_pred HHHHHHHHh--cCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCEEEEEeehhhhcccc----------------HH
Confidence 345566655 467788877677753 222 245554 66655 6666553322 12
Q ss_pred hhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChhHHHHHHH
Q 004907 198 HIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPVVMVQAYR 277 (724)
Q Consensus 198 ~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~~~v~Ayr 277 (724)
.+.+.+..++++|. +.++.+=+..|-|+++ .. ..-.+++.+.|-+=|+-|-=-+..-.+++..+
T Consensus 144 ~v~~eI~~v~~a~~--~~~lKVIlEt~~Lt~e----------ei----~~A~~ia~eaGADfVKTSTGf~~~GAT~edV~ 207 (260)
T 3r12_A 144 YVYEDIRSVVESVK--GKVVKVIIETCYLDTE----------EK----IAACVISKLAGAHFVKTSTGFGTGGATAEDVH 207 (260)
T ss_dssp HHHHHHHHHHHHTT--TSEEEEECCGGGCCHH----------HH----HHHHHHHHHTTCSEEECCCSSSSCCCCHHHHH
T ss_pred HHHHHHHHHHHhcC--CCcEEEEEeCCCCCHH----------HH----HHHHHHHHHhCcCEEEcCCCCCCCCCCHHHHH
Confidence 33444666777885 6788877777766433 22 23457888899887777641122345677777
Q ss_pred HHHHHhhcCCCCccccccccccCC
Q 004907 278 LLVAEMYVHGWDYPLHLGVTEAGE 301 (724)
Q Consensus 278 lla~~m~~~g~dYPLHLGVTEAG~ 301 (724)
++.+. . .-.+||==||.
T Consensus 208 lm~~~-----v--g~~v~VKaAGG 224 (260)
T 3r12_A 208 LMKWI-----V--GDEMGVKASGG 224 (260)
T ss_dssp HHHHH-----H--CTTSEEEEESS
T ss_pred HHHHH-----h--CCCceEEEeCC
Confidence 77766 2 12455555554
No 328
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=21.25 E-value=1.1e+02 Score=29.58 Aligned_cols=62 Identities=5% Similarity=-0.009 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEec
Q 004907 198 HIEEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKA 266 (724)
Q Consensus 198 ~I~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~Ka 266 (724)
+..+.++..++.|++.|.+. |.+..| .+...... ..-+.++++--+.++++++.| |.|.+-.
T Consensus 90 ~~~~~~~~~i~~A~~lGa~~-v~~~~g-~~~~~~~~--~~~~~~~~~l~~l~~~a~~~G---v~l~lE~ 151 (269)
T 3ngf_A 90 EFRDNVDIALHYALALDCRT-LHAMSG-ITEGLDRK--ACEETFIENFRYAADKLAPHG---ITVLVEP 151 (269)
T ss_dssp HHHHHHHHHHHHHHHTTCCE-EECCBC-BCTTSCHH--HHHHHHHHHHHHHHHHHGGGT---CEEEECC
T ss_pred HHHHHHHHHHHHHHHcCCCE-EEEccC-CCCCCCHH--HHHHHHHHHHHHHHHHHHHcC---CEEEEee
Confidence 33445777999999999874 566666 33211000 011344555555566667766 4666654
No 329
>1xla_A D-xylose isomerase; isomerase(intramolecular oxidoreductase); 2.30A {Arthrobacter SP} SCOP: c.1.15.3 PDB: 1die_A* 1did_A 1xlb_A 1xlc_A* 1xld_A* 1xle_A 1xlf_A* 1xlg_A* 1xlh_A 1xli_A* 1xlj_A* 1xlk_A 1xll_A 1xlm_A* 4xia_A* 5xia_A*
Probab=21.20 E-value=2.2e+02 Score=29.71 Aligned_cols=61 Identities=10% Similarity=0.032 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCC----chHHHHHHHHHHHHHHHCCCCcEEEEE
Q 004907 200 EEVFSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDS----PRGMVESAFEFARICRKLDFHNFLFSM 264 (724)
Q Consensus 200 ~e~~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t----~~amVeSAle~~~i~e~~~F~diviS~ 264 (724)
.+.++..++.|++.|.+ .|-+..|+-..+... +.. -+.++++--+.++++++.|+ +|.|.+
T Consensus 115 i~~~~~~i~~A~~LGa~-~vvv~~G~~g~~~~~--~~~~~~~~~~~~e~L~~l~~~A~~~G~-~v~l~l 179 (394)
T 1xla_A 115 LAKVLHNIDLAAEMGAE-TFVMWGGREGSEYDG--SKDLAAALDRMREGVDTAAGYIKDKGY-NLRIAL 179 (394)
T ss_dssp HHHHHHHHHHHHHTTCS-EEEECCTTCEESSGG--GCCHHHHHHHHHHHHHHHHHHHHHHTC-CCEEEE
T ss_pred HHHHHHHHHHHHHhCCC-EEEECCCCCcccccc--ccCHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEE
Confidence 34567799999999998 466766753110000 011 14556666666778888886 344444
No 330
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Probab=21.12 E-value=51 Score=27.90 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=25.3
Q ss_pred CceeeecCCCceeEeeecceeeeecCChhHHHHHHHHHHH
Q 004907 673 ADFGYVGGAPGKIDLYVGKTVVKRGIAMEQATDALIQLIK 712 (724)
Q Consensus 673 AD~GyvGg~pGki~Ly~gke~V~~~Ipeeeavd~Li~lIk 712 (724)
..||+.+ .|.-+.+-+.++++.+..+.+++.+.|.++++
T Consensus 108 ~~~~v~~-~P~~~lid~~G~i~~~~~~~~~l~~~l~~ll~ 146 (148)
T 3fkf_A 108 KQYAILT-LPTNILLSPTGKILARDIQGEALTGKLKELLK 146 (148)
T ss_dssp HHTTCCS-SSEEEEECTTSBEEEESCCHHHHHHHHHHHC-
T ss_pred HhcCCCC-cCEEEEECCCCeEEEecCCHHHHHHHHHHHHc
Confidence 3567665 47555333678888887777777777766654
No 331
>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1
Probab=21.06 E-value=54 Score=33.82 Aligned_cols=95 Identities=24% Similarity=0.299 Sum_probs=60.8
Q ss_pred CcceeecCCCCHHHHH----HHhhhcCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 144 NIPLVADIHFAPSVAL----RVAECFDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl----~a~~~vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
.+.-|=|=++.++... .|.+++|-+-+-=|...=-. ++.+++.++.|+++|+++=-
T Consensus 14 GlT~v~dkglg~~~~~d~Le~~g~yID~lKfg~Gt~~l~~--------------------~~~l~eki~l~~~~gV~v~~ 73 (251)
T 1qwg_A 14 GLTVVLDKGLPPKFVEDYLKVCGDYIDFVKFGWGTSAVID--------------------RDVVKEKINYYKDWGIKVYP 73 (251)
T ss_dssp CCEEEEESSCCHHHHHHHHHHHGGGCSEEEECTTGGGGSC--------------------HHHHHHHHHHHHTTTCEEEE
T ss_pred CeeEEecCCCCHHHHHHHHHHhhhhcceEEecCceeeecC--------------------HHHHHHHHHHHHHcCCeEEC
Confidence 3455566666655444 33345777776555442211 23578899999999999843
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCChh
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNPV 270 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv~ 270 (724)
| |.|=...+.+ + +.-+|++.|.++||+-|-||-=+-+.+
T Consensus 74 G---GTl~E~~~~q------g---~~~~yl~~~k~lGf~~iEiS~G~i~l~ 112 (251)
T 1qwg_A 74 G---GTLFEYAYSK------G---KFDEFLNECEKLGFEAVEISDGSSDIS 112 (251)
T ss_dssp C---HHHHHHHHHT------T---CHHHHHHHHHHHTCCEEEECCSSSCCC
T ss_pred C---cHHHHHHHHc------C---cHHHHHHHHHHcCCCEEEECCCcccCC
Confidence 3 3343333322 1 456799999999999999997666654
No 332
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=20.92 E-value=2e+02 Score=28.61 Aligned_cols=90 Identities=12% Similarity=0.175 Sum_probs=58.1
Q ss_pred HHHHHHHHHhcCCcEEEeeccCCCchHHHh-------hcC-CCchHHHHHHHHHHHHHHHCCCCcEEEEEecC-----Ch
Q 004907 203 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMS-------YYG-DSPRGMVESAFEFARICRKLDFHNFLFSMKAS-----NP 269 (724)
Q Consensus 203 ~~~vv~~ake~g~~IRIGvN~GSL~~~il~-------~yg-~t~~amVeSAle~~~i~e~~~F~diviS~KaS-----nv 269 (724)
.+++.+.++++|+.+ ++++.+.++..+.. .+. ...+..++...+.++.+.++|-..|++..-.. +.
T Consensus 61 ~~~~~~~l~~~GL~v-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~ 139 (303)
T 3l23_A 61 MMDFKKMAEDAGLKI-ISSHVNPVDTSISDPFKAMIFKYSKEVTPKIMEYWKATAADHAKLGCKYLIQPMMPTITTHDEA 139 (303)
T ss_dssp HHHHHHHHHHTTCEE-EEEECCCBCTTCSSTTTTBCCSCCTTTHHHHHHHHHHHHHHHHHTTCSEEEECSCCCCCSHHHH
T ss_pred HHHHHHHHHHcCCeE-EEEecccccccccCcccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHH
Confidence 456778899999988 45554432211000 010 11267788888999999999999998852111 13
Q ss_pred hHHHHHHHHHHHHhhcCCCC--cccc
Q 004907 270 VVMVQAYRLLVAEMYVHGWD--YPLH 293 (724)
Q Consensus 270 ~~~v~Ayrlla~~m~~~g~d--YPLH 293 (724)
..+++..+.+++...+.|+. .-+|
T Consensus 140 ~~~~~~l~~l~~~a~~~Gv~~~l~~E 165 (303)
T 3l23_A 140 KLVCDIFNQASDVIKAEGIATGFGYH 165 (303)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCcceEEEc
Confidence 45677788888887777777 5554
No 333
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.90 E-value=42 Score=26.94 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=15.4
Q ss_pred cCCCCccccccHHHHHHHHHH
Q 004907 627 SCPSCGRTLFDLQEISAEIRE 647 (724)
Q Consensus 627 SCPsCGRTlfDLq~~~~~Ik~ 647 (724)
.||.|++. |.+.+..++=.+
T Consensus 14 ~CPrCn~~-f~~~~sLr~Hmk 33 (49)
T 2e72_A 14 ICPRCNAQ-FRVTEALRGHMC 33 (49)
T ss_dssp CCTTTCCC-CSSHHHHHHHHH
T ss_pred eCCccccc-ccchHHHHhhhh
Confidence 69999998 988776655444
No 334
>2vd8_A Alanine racemase; pyridoxal 5'-phosphate, peptidoglycan synthesis, PLP, OPPF, L-alanine, isomerase, D- alanine, pyridoxal phosphate; HET: MLY LLP; 1.47A {Bacillus anthracis} PDB: 2vd9_A* 3ha1_A*
Probab=20.84 E-value=65 Score=33.82 Aligned_cols=81 Identities=11% Similarity=0.085 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCc--EEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE-----EecCC------h
Q 004907 203 FSPLVEKCKKYGRA--VRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS-----MKASN------P 269 (724)
Q Consensus 203 ~~~vv~~ake~g~~--IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS-----~KaSn------v 269 (724)
++.+-+ |++.+.+ |.|=+|.| |.|+|-.+. +.+.+.++.+.++ .++.+. +=+++ .
T Consensus 115 l~~l~~-a~~~~~~~~V~lkvdtG------m~R~G~~~~---~e~~~~~~~i~~~--~~l~l~Gl~tH~~~~d~~~~~~~ 182 (391)
T 2vd8_A 115 VDEAIX-LWDGSSTMXYHINFDSG------MGRIGIRER---XELXGFLXSLEGA--PFLELEGVYTHFATADEVETSYF 182 (391)
T ss_dssp HHHHHH-HCCSSCCEEEEEEBCSS------CCSSSBCCH---HHHHHHHHHHTTC--TTEEEEEEECCCSSTTSSSCHHH
T ss_pred HHHHHH-HHhcCCceEEEEEEeCC------CCCCCCCch---hhHHHHHHHHhhc--CCceEEEeeeccccccCCCcHHH
Confidence 445556 7666655 55568888 578995542 2244445555443 222221 11121 1
Q ss_pred hHHHHHHHHHHHHhhcCCCCcc-cccc
Q 004907 270 VVMVQAYRLLVAEMYVHGWDYP-LHLG 295 (724)
Q Consensus 270 ~~~v~Ayrlla~~m~~~g~dYP-LHLG 295 (724)
...++.++.+++++.+.|.+.| +|+|
T Consensus 183 ~~q~~~f~~~~~~l~~~g~~~~~~~~g 209 (391)
T 2vd8_A 183 DXQYNTFLEQLSWLXEFGVDPXFVHTA 209 (391)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSEECC
T ss_pred HHHHHHHHHHHHHHHhccCCcceEEec
Confidence 2235566666667666666543 5654
No 335
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=20.82 E-value=3e+02 Score=28.08 Aligned_cols=112 Identities=17% Similarity=0.235 Sum_probs=70.5
Q ss_pred CcceeecCCCCHHHHHHHhhh-----cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEE
Q 004907 144 NIPLVADIHFAPSVALRVAEC-----FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVR 218 (724)
Q Consensus 144 ~iPLVADIHF~~~lAl~a~~~-----vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IR 218 (724)
-.|. .|--.|+.....=+++ ++.|=++ |.-|. | -..|++|..+ -++.+++.++.+.+|+=
T Consensus 17 vTPf-~dg~iD~~~l~~lv~~li~~Gv~gl~v~-GttGE----~--~~Ls~~Er~~-------v~~~~~~~~~g~rvpvi 81 (301)
T 3m5v_A 17 ITPF-KNGKVDEQSYARLIKRQIENGIDAVVPV-GTTGE----S--ATLTHEEHRT-------CIEIAVETCKGTKVKVL 81 (301)
T ss_dssp CCCE-ETTEECHHHHHHHHHHHHHTTCCEEECS-STTTT----G--GGSCHHHHHH-------HHHHHHHHHTTSSCEEE
T ss_pred ecCc-CCCCCCHHHHHHHHHHHHHcCCCEEEEC-ccccC----h--hhCCHHHHHH-------HHHHHHHHhCCCCCeEE
Confidence 3677 8888887655544443 4444222 44443 1 1234444322 23344555554368998
Q ss_pred EeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHHHHhhcCCCCccc
Q 004907 219 IGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLVAEMYVHGWDYPL 292 (724)
Q Consensus 219 IGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaSnv~~~v~Ayrlla~~m~~~g~dYPL 292 (724)
+||.+-| .+.+++.++.+++.|.+-+.+.. |.| ...+++-|+.+++. .+-|+
T Consensus 82 aGvg~~~----------------t~~ai~la~~a~~~Gadavlv~~P~y~~~s-~~~l~~~f~~va~a-----~~lPi 137 (301)
T 3m5v_A 82 AGAGSNA----------------THEAVGLAKFAKEHGADGILSVAPYYNKPT-QQGLYEHYKAIAQS-----VDIPV 137 (301)
T ss_dssp EECCCSS----------------HHHHHHHHHHHHHTTCSEEEEECCCSSCCC-HHHHHHHHHHHHHH-----CSSCE
T ss_pred EeCCCCC----------------HHHHHHHHHHHHHcCCCEEEEcCCCCCCCC-HHHHHHHHHHHHHh-----CCCCE
Confidence 8884433 34578899999999998877763 665 47899999999998 55554
No 336
>3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified}
Probab=20.37 E-value=6.5e+02 Score=26.67 Aligned_cols=99 Identities=13% Similarity=0.023 Sum_probs=69.5
Q ss_pred cCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEE-EecCChhHHHHHHHHHHHHhhcCCCCcc
Q 004907 213 YGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFS-MKASNPVVMVQAYRLLVAEMYVHGWDYP 291 (724)
Q Consensus 213 ~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS-~KaSnv~~~v~Ayrlla~~m~~~g~dYP 291 (724)
.+++||+=.|. ++ + ++.|+++++.|+++|..=|-=- +...| ++.|+.|.++ .+.|
T Consensus 212 ~d~~l~vDaN~-~~----------~----~~~A~~~~~~L~~~~i~~iEqP~~~~~~----~~~~~~l~~~-----~~iP 267 (410)
T 3dip_A 212 QRIEIMCELHS-LW----------G----THAAARICNALADYGVLWVEDPIAKMDN----IPAVADLRRQ-----TRAP 267 (410)
T ss_dssp TSSEEEEECTT-CB----------C----HHHHHHHHHHGGGGTCSEEECCBSCTTC----HHHHHHHHHH-----HCCC
T ss_pred CCceEEEECCC-CC----------C----HHHHHHHHHHHHhcCCCEEECCCCCccc----HHHHHHHHhh-----CCCC
Confidence 46899998883 23 2 3678899999999887655533 44333 6778888888 6777
Q ss_pred ccccccccCCCCCCchhhHHHHHHHhhcCCCceeEEecCCCCcccchHHHHHHHh
Q 004907 292 LHLGVTEAGEGEDGRMKSAIGIGTLLQDGLGDTIRVSLTEPPEKEIDPCRRLANL 346 (724)
Q Consensus 292 LHLGVTEAG~~~~G~IKSaiGiG~LL~~GIGDTIRVSLT~dP~~EV~v~~~Ll~~ 346 (724)
+=+ ++.+.|.-.+-.+|..|--|-|.+-++--- =+.-+.+|+++
T Consensus 268 Ia~---------dE~~~~~~~~~~~l~~~~~d~v~~k~~~~G--Git~~~~ia~~ 311 (410)
T 3dip_A 268 ICG---------GENLAGTRRFHEMLCADAIDFVMLDLTWCG--GLSEGRKIAAL 311 (410)
T ss_dssp EEE---------CTTCCSHHHHHHHHHTTCCSEEEECTTTSS--CHHHHHHHHHH
T ss_pred EEe---------cCCcCCHHHHHHHHHcCCCCeEeecccccC--CHHHHHHHHHH
Confidence 643 455677888899999999999998876531 13445555554
No 337
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=20.35 E-value=1e+02 Score=29.72 Aligned_cols=134 Identities=9% Similarity=0.076 Sum_probs=70.1
Q ss_pred CCCcceeecCCC-CHHHHHHHhhh-cCccccCCCCCcchhhhhhccccchHHHHHHhhhhhhhHHHHHHHHHhcCCcEEE
Q 004907 142 NYNIPLVADIHF-APSVALRVAEC-FDKIRVNPGNFADRRAQFEQLEYTDDEYQKELQHIEEVFSPLVEKCKKYGRAVRI 219 (724)
Q Consensus 142 ~~~iPLVADIHF-~~~lAl~a~~~-vdkiRINPGNig~~~k~f~~~~Ytdeey~~ele~I~e~~~~vv~~ake~g~~IRI 219 (724)
.+++|+++.--. ++.-+..+++. +|.|=+.-..+.+ -..+.+..+++|..+-+
T Consensus 73 ~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~~-------------------------p~~~~~~~~~~g~~~~~ 127 (244)
T 1vzw_A 73 AMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALET-------------------------PEWVAKVIAEHGDKIAV 127 (244)
T ss_dssp HCSSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHC-------------------------HHHHHHHHHHHGGGEEE
T ss_pred hcCCcEEEECCcCCHHHHHHHHHcCCCEEEECchHhhC-------------------------HHHHHHHHHHcCCcEEE
Confidence 578999875333 45667777776 8877553332221 11244445556656777
Q ss_pred eeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE-ecCC--hhHHHHHHHHHHHHhhcCCCCccccccc
Q 004907 220 GTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM-KASN--PVVMVQAYRLLVAEMYVHGWDYPLHLGV 296 (724)
Q Consensus 220 GvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~-KaSn--v~~~v~Ayrlla~~m~~~g~dYPLHLGV 296 (724)
|++.-- . .+..+|-.... .+.+++++.+++.|++-|.+.- +.-. .....+.++.+++. .+.|+-
T Consensus 128 ~l~~~~--g-~v~~~g~~~~~--~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~-----~~ipvi--- 194 (244)
T 1vzw_A 128 GLDVRG--T-TLRGRGWTRDG--GDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAA-----TDRPVV--- 194 (244)
T ss_dssp EEEEET--T-EECCSSSCCCC--CBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHT-----CSSCEE---
T ss_pred EEEccC--C-EEEEcCcccCC--CCHHHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHHh-----cCCCEE---
Confidence 776431 0 12233411000 0346667778889999887752 2100 00125666777766 567753
Q ss_pred cccCCCCCCchhhHHHHHHHhhc
Q 004907 297 TEAGEGEDGRMKSAIGIGTLLQD 319 (724)
Q Consensus 297 TEAG~~~~G~IKSaiGiG~LL~~ 319 (724)
-+|=|++.--+-.++..
T Consensus 195 ------a~GGI~~~~d~~~~~~~ 211 (244)
T 1vzw_A 195 ------ASGGVSSLDDLRAIAGL 211 (244)
T ss_dssp ------EESCCCSHHHHHHHHTT
T ss_pred ------EECCCCCHHHHHHHHhh
Confidence 23445554444455443
No 338
>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=20.31 E-value=59 Score=28.45 Aligned_cols=58 Identities=12% Similarity=0.067 Sum_probs=34.8
Q ss_pred CCCcEEEEeeeeecCCCCCCCCceeeecCCCceeEeeecceeeeecCChhH------HHHHHHHHHHhcccc
Q 004907 652 LPGVSIAIMGCIVNGPGEMADADFGYVGGAPGKIDLYVGKTVVKRGIAMEQ------ATDALIQLIKDHGRW 717 (724)
Q Consensus 652 LkgvkIAVMGCIVNGPGEmadAD~GyvGg~pGki~Ly~gke~V~~~Ipeee------avd~Li~lIk~~g~W 717 (724)
++.++++-+-|--| ...|++.+ .|- +.+|++++.+.+-+-..+ -.++|.+.++++|--
T Consensus 59 ~~~v~~~~vd~~~~------~~~~~i~~-~Pt-~~~~~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~~i 122 (135)
T 2dbc_A 59 FPETKFVKAIVNSC------IEHYHDNC-LPT-IFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGAI 122 (135)
T ss_dssp CSSEEEEEECCSSS------CSSCCSSC-CSE-EEEESSSSCSEEEESTTTTTCTTCCHHHHHHHHHHHTSS
T ss_pred CCCcEEEEEEhhcC------cccCCCCC-CCE-EEEEECCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcCCc
Confidence 35676665444222 25788876 575 568887777765332211 246677888887763
No 339
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=20.19 E-value=26 Score=41.02 Aligned_cols=43 Identities=26% Similarity=0.458 Sum_probs=27.0
Q ss_pred hccCCcceeecCCCCccccc--cHH--H-HHHHHHHHhcCCC-CcEEEE
Q 004907 617 RMRNTKTEYVSCPSCGRTLF--DLQ--E-ISAEIREKTSHLP-GVSIAI 659 (724)
Q Consensus 617 r~R~~kte~ISCPsCGRTlf--DLq--~-~~~~Ik~~t~hLk-gvkIAV 659 (724)
.=|.++.+-||||.||..++ |-. . ...-|+++..-|+ |--|||
T Consensus 170 ~dRRfhAqp~aC~~CGP~l~l~~~~~~~~~~~~i~~a~~~l~~G~iva~ 218 (772)
T 4g9i_A 170 LNRRYHAEPTACPVCGPSYRLYTSDGQEIYGDPLRKAAELIDKGYIVAI 218 (772)
T ss_dssp SSTTTTCTTCCCTTTSCCEEEESSSCBCCTTHHHHHHHHHHTTSCCEEE
T ss_pred CCCCCcCCCCCCccCCceEEEEcCCCCeechHHHHHHHHHHHcCCEEEE
Confidence 34889999999999999864 110 0 0123455555554 555777
No 340
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=20.07 E-value=67 Score=27.84 Aligned_cols=53 Identities=11% Similarity=0.279 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEEecCCh
Q 004907 203 FSPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSMKASNP 269 (724)
Q Consensus 203 ~~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~KaSnv 269 (724)
++.-+..|-.+++.|-|....-.- +..+.| -.++++.++||.||-+.+..+.|
T Consensus 38 lekalaragarnvqitisaendeq-----------akelle---liarllqklgykdinvrvngtev 90 (96)
T 2jvf_A 38 LEKALARAGARNVQITISAENDEQ-----------AKELLE---LIARLLQKLGYKDINVRVNGTEV 90 (96)
T ss_dssp HHHHHHHHTCSEEEEEEECSSHHH-----------HHHHHH---HHHHHHHHHTCSEEEEEEETTEE
T ss_pred HHHHHHhccccceEEEEEecChHH-----------HHHHHH---HHHHHHHHhCCCceEEEEcCEEE
Confidence 344556677777777775521111 122222 24578999999999988765544
No 341
>3gnp_A OS03G0212800 protein; beta-alpha barrel, glycosidase, hydrolase; HET: SOG; 1.80A {Oryza sativa subsp} PDB: 3gno_A* 3gnr_A*
Probab=20.03 E-value=1.6e+02 Score=32.56 Aligned_cols=51 Identities=18% Similarity=0.264 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCcEEEeeccCCCchHHHhhcCC-CchHHHHHHHHHHHHHHH
Q 004907 204 SPLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGD-SPRGMVESAFEFARICRK 254 (724)
Q Consensus 204 ~~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~-t~~amVeSAle~~~i~e~ 254 (724)
..|++.|+++||-.=|-..|=.|+..+.++||. ....+|+-=.++++.|-+
T Consensus 113 ~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~~~v~~F~~Ya~~~~~ 164 (488)
T 3gnp_A 113 NKLIDALLAKGIQPYVTLYHWDLPQALEDKYKGWLDRQIVDDFAAYAETCFR 164 (488)
T ss_dssp HHHHHHHHHTTCEEEEEEESSCCBHHHHHHHCGGGSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 459999999999999999999999999999985 666888888888886643
No 342
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=20.02 E-value=3.2e+02 Score=27.78 Aligned_cols=65 Identities=18% Similarity=0.218 Sum_probs=47.8
Q ss_pred HHHHHHHhcCCcEEEeeccCCCchHHHhhcCCCchHHHHHHHHHHHHHHHCCCCcEEEEE----ecCChhHHHHHHHHHH
Q 004907 205 PLVEKCKKYGRAVRIGTNHGSLSDRIMSYYGDSPRGMVESAFEFARICRKLDFHNFLFSM----KASNPVVMVQAYRLLV 280 (724)
Q Consensus 205 ~vv~~ake~g~~IRIGvN~GSL~~~il~~yg~t~~amVeSAle~~~i~e~~~F~diviS~----KaSnv~~~v~Ayrlla 280 (724)
.+++.++. .+|+=+||.+-| .+.+++.++.+++.|.+-+.+.. |.| ...+++-|+.++
T Consensus 68 ~~~~~~~g-rvpviaGvg~~~----------------t~~ai~la~~a~~~Gadavlv~~P~y~~~~-~~~l~~~f~~va 129 (297)
T 3flu_A 68 AVVKHVAK-RVPVIAGTGANN----------------TVEAIALSQAAEKAGADYTLSVVPYYNKPS-QEGIYQHFKTIA 129 (297)
T ss_dssp HHHHHHTT-SSCEEEECCCSS----------------HHHHHHHHHHHHHTTCSEEEEECCCSSCCC-HHHHHHHHHHHH
T ss_pred HHHHHhCC-CCcEEEeCCCcC----------------HHHHHHHHHHHHHcCCCEEEECCCCCCCCC-HHHHHHHHHHHH
Confidence 34555543 488888884444 35678999999999998887763 665 478999999999
Q ss_pred HHhhcCCCCccc
Q 004907 281 AEMYVHGWDYPL 292 (724)
Q Consensus 281 ~~m~~~g~dYPL 292 (724)
+. .+-|+
T Consensus 130 ~a-----~~lPi 136 (297)
T 3flu_A 130 EA-----TSIPM 136 (297)
T ss_dssp HH-----CCSCE
T ss_pred Hh-----CCCCE
Confidence 98 55554
Done!