Your job contains 1 sequence.
>004909
MKKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYL
LIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMEL
PYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLL
VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM
TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI
DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS
AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK
IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL
SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA
ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR
IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV
AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTMLKPRLLWYELNSSHALPR
FIVV
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004909
(724 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2006822 - symbol:RDR1 "AT1G14790" species:3702... 2297 2.9e-238 1
TAIR|locus:2136068 - symbol:RDR2 "RNA-dependent RNA polym... 1217 8.0e-124 1
UNIPROTKB|Q8LHH9 - symbol:SHL2 "Probable RNA-dependent RN... 964 5.2e-97 1
TAIR|locus:2114633 - symbol:RDR6 "AT3G49500" species:3702... 955 4.7e-96 1
UNIPROTKB|G4NJ50 - symbol:MGG_02748 "RNA-dependent RNA po... 736 9.2e-72 1
POMBASE|SPAC6F12.09 - symbol:rdp1 "RNA-directed RNA polym... 547 1.1e-51 1
WB|WBGene00004510 - symbol:rrf-3 species:6239 "Caenorhabd... 536 3.7e-50 1
ASPGD|ASPL0000040001 - symbol:rrpC species:162425 "Emeric... 452 3.8e-40 2
WB|WBGene00004509 - symbol:rrf-2 species:6239 "Caenorhabd... 261 7.2e-37 2
WB|WBGene00004508 - symbol:rrf-1 species:6239 "Caenorhabd... 237 1.9e-34 2
ASPGD|ASPL0000071805 - symbol:rrpB species:162425 "Emeric... 219 5.2e-31 3
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 320 1.4e-24 1
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 313 8.3e-24 1
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 279 3.7e-20 1
WB|WBGene00001214 - symbol:ego-1 species:6239 "Caenorhabd... 226 1.3e-14 1
TAIR|locus:2052020 - symbol:AT2G19930 species:3702 "Arabi... 95 3.8e-06 4
TAIR|locus:2052040 - symbol:AT2G19910 species:3702 "Arabi... 94 8.0e-06 4
>TAIR|locus:2006822 [details] [associations]
symbol:RDR1 "AT1G14790" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0016441
"posttranscriptional gene silencing" evidence=ISS] [GO:0009615
"response to virus" evidence=IMP] [GO:0009751 "response to
salicylic acid stimulus" evidence=IEP] [GO:0060148 "positive
regulation of posttranscriptional gene silencing" evidence=IMP]
[GO:0000165 "MAPK cascade" evidence=RCA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009617 "response to
bacterium" evidence=RCA] [GO:0009862 "systemic acquired resistance,
salicylic acid mediated signaling pathway" evidence=RCA]
[GO:0009867 "jasmonic acid mediated signaling pathway"
evidence=RCA] [GO:0010310 "regulation of hydrogen peroxide
metabolic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA] [GO:0031348
"negative regulation of defense response" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0010025
"wax biosynthetic process" evidence=IGI] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006952
GO:GO:0010025 GO:GO:0009751 GO:GO:0003723 GO:GO:0009615
GO:GO:0031047 EMBL:AC006917 UniGene:At.70434 GO:GO:0003968
EMBL:AY148431 EMBL:AK228731 EMBL:AJ011977 IPI:IPI00542699
RefSeq:NP_172932.1 UniGene:At.27823 ProteinModelPortal:Q9LQV2
SMR:Q9LQV2 STRING:Q9LQV2 PaxDb:Q9LQV2 PRIDE:Q9LQV2
EnsemblPlants:AT1G14790.1 GeneID:838044 KEGG:ath:AT1G14790
TAIR:At1g14790 eggNOG:NOG307726 HOGENOM:HOG000239464
InParanoid:Q9LQV2 KO:K11699 OMA:YEDYITE PhylomeDB:Q9LQV2
ProtClustDB:CLSN2682981 Genevestigator:Q9LQV2 GO:GO:0060148
PANTHER:PTHR23079 Uniprot:Q9LQV2
Length = 1107
Score = 2297 (813.6 bits), Expect = 2.9e-238, P = 2.9e-238
Identities = 453/699 (64%), Positives = 551/699 (78%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
KKF LW +V V+FG GMRK++F S ++YRLEL YENIW+I+LH P+ + +K+L+
Sbjct: 111 KKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLV 170
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQ++GAP+IF+K + +LL+ + +F+ + D+QW+RTTDFT S+ IGQST C+ELP
Sbjct: 171 IQVIGAPKIFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELP 228
Query: 122 YRLELPDFKENFAYYKESE-DRFVLETGSAYSRSLD-LVPIVGPPDGIALPYEILFKINL 179
L +PDF+ENFA Y E F++E+GS+YS + + LVP+V PP G +LP+EILFK+N
Sbjct: 229 VHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNT 288
Query: 180 LVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKY 239
LVQN C++GP LD +FYRL++ + ++ I+H L+KL+HL ECCYEP+ WL D+Y+K+
Sbjct: 289 LVQNACLSGPALDLDFYRLLNQKKYDRAL--IDHCLEKLFHLGECCYEPAHWLRDEYKKW 346
Query: 240 MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
++ P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFLR+SF
Sbjct: 347 ISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSF 406
Query: 300 IDEDLDKIHSTDLSPRGSSATDXXXXXXXXXXLSTLRNGILIGDRKFEFLAFSSSQLRES 359
+DEDL+K+ S DLSPR S+ S LR+GI+IGD+KFEFLAFSSSQLRE+
Sbjct: 407 VDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLREN 463
Query: 360 SAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 419
SAWMFA +TAA IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+IPDV
Sbjct: 464 SAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDV 523
Query: 420 KI-EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK 478
+I +G T+YVFSDGIGK+SAEFARKVA KCGL + PSAFQIRYGGYKGVVA DP SSK
Sbjct: 524 EIISLG-TRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSK 582
Query: 479 KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 538
KLSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLG+ D +FEKKQRE V +L
Sbjct: 583 KLSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRL 642
Query: 539 DAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTK 598
DAILT PL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLELRTK
Sbjct: 643 DAILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTK 702
Query: 599 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLV 658
TRIFI GRSMMGCLDETRTL YGQV VQ S R G I+ G V
Sbjct: 703 TRIFISGGRSMMGCLDETRTLEYGQVVVQYSDP-MRP--GRRF-----------IITGPV 748
Query: 659 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VVAKNPCLHPGDVRVL+AVNVPAL+HMVDCVVFPQKG+R
Sbjct: 749 VVAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLR 787
>TAIR|locus:2136068 [details] [associations]
symbol:RDR2 "RNA-dependent RNA polymerase 2" species:3702
"Arabidopsis thaliana" [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009751 "response to salicylic acid stimulus" evidence=IEP]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA;IMP] [GO:0016458 "gene silencing" evidence=IMP]
[GO:0007267 "cell-cell signaling" evidence=RCA;IMP] [GO:0016246
"RNA interference" evidence=RCA;IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0010495 "long-distance posttranscriptional gene
silencing" evidence=IMP] [GO:0050832 "defense response to fungus"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010073 "meristem maintenance" evidence=RCA] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR007855
Pfam:PF05183 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161531
GO:GO:0005730 GO:GO:0050832 GO:GO:0007267 GO:GO:0003723
GO:GO:0030422 EMBL:AF080120 EMBL:AL049876 GO:GO:0010495
GO:GO:0003968 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 IPI:IPI00535843
PIR:T01920 RefSeq:NP_192851.1 UniGene:At.43417
ProteinModelPortal:O82504 SMR:O82504 STRING:O82504 PaxDb:O82504
PRIDE:O82504 EnsemblPlants:AT4G11130.1 GeneID:826714
KEGG:ath:AT4G11130 TAIR:At4g11130 eggNOG:NOG252917
InParanoid:O82504 OMA:SKCAARM PhylomeDB:O82504
Genevestigator:O82504 Uniprot:O82504
Length = 1133
Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
Identities = 271/708 (38%), Positives = 408/708 (57%)
Query: 2 KKFAVL--WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKY 59
K+F L W GV + R++ F + G+ Y++E+ +E+I E C ++
Sbjct: 121 KRFCALEKWDGVRCWILTE--KRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEI 178
Query: 60 --LLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLC 117
L++L P++F++ ++S + F KE D W+RTTDF+ S IG ST C
Sbjct: 179 DAFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFC 238
Query: 118 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPD-GIALPYEILFK 176
+E+ + D YY+E G ++ + +VP++ G+ PYEILF+
Sbjct: 239 LEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQ 298
Query: 177 INLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQY 236
+N LV ++ L ++ L+ R +S+ L KL+ CY+P ++ Q
Sbjct: 299 LNALVHAQKIS--LFAASDMELIKILRG-MSLETALVILKKLHQQSSICYDPVFFVKTQM 355
Query: 237 RKYMTS-RSKPSSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNF 294
+ + + P+S L + ++ R VTPS++Y GPE+ +N V+++F + +F
Sbjct: 356 QSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDF 415
Query: 295 LRISFIDEDLDKIHSTDLSPRGSSA--TDXXXXXXXXXXLSTLRNGILIGDRKFEFLAFS 352
+R++F++ED K+ + LS LS L GI +G ++FEFLAFS
Sbjct: 416 MRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFS 475
Query: 353 SSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 412
+SQLR +S WMFAS + A +IREWMG FR+IR+++K AAR+GQ FS+S++TL V +
Sbjct: 476 ASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQD 535
Query: 413 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA 472
+E IPD+++ Y FSDGIGK+S FA++VA KCGL + PSAFQIRYGGYKGV+A
Sbjct: 536 VEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLS-HVPSAFQIRYGGYKGVIAV 594
Query: 473 DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQR 532
D +S +KLSLRDSM K++S L+V W++ PCFLNR++I LLSTLGI D +FE Q
Sbjct: 595 DRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQA 654
Query: 533 EAVRQLDAILTDPLKAQEALELMSPGENT-NILKELLICGYKPDAEPFLSMMLQTFRASK 591
+ L +L D A L+ +S GEN+ N+L ++L+ GY P +EP+LSMML+ S+
Sbjct: 655 VHLSMLGNMLEDRDAALNVLQKLS-GENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQ 713
Query: 592 LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGEXXXXXXXXXXXX 651
L EL+++ RI +P GR ++GC+DE L YGQV+V+++ +L
Sbjct: 714 LSELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVT-LTKAELKSRDQSYFRKIDEET 772
Query: 652 XIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM--VDCVVFPQKGMR 697
+V G VVV KNPCLHPGD+RVL A+ +DC++FPQKG R
Sbjct: 773 SVVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGER 820
>UNIPROTKB|Q8LHH9 [details] [associations]
symbol:SHL2 "Probable RNA-dependent RNA polymerase SHL2"
species:39947 "Oryza sativa Japonica Group" [GO:0010492
"maintenance of shoot apical meristem identity" evidence=IMP]
[GO:0016246 "RNA interference" evidence=IMP] InterPro:IPR007855
Pfam:PF05183 GO:GO:0005634 GO:GO:0016246 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
EMBL:AP008207 GO:GO:0048544 GO:GO:0009616 GO:GO:0003968
eggNOG:NOG307726 HOGENOM:HOG000239464 PANTHER:PTHR23079 OMA:SCAEQGN
EMBL:AB353923 EMBL:AP004357 RefSeq:NP_001043229.1 UniGene:Os.30747
EnsemblPlants:LOC_Os01g34350.1 GeneID:4323938 Gramene:Q8LHH9
ProtClustDB:CLSN2691477 BRENDA:2.7.7.48 Uniprot:Q8LHH9
Length = 1218
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 241/687 (35%), Positives = 358/687 (52%)
Query: 34 EYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPV-FNFFKE 92
+ +LE ++ E+ L+ ++ LL++L AP + R+ D + PV F+ +
Sbjct: 214 DVKLEFPVRDVLEVRLY----RLDCSLLLRLAAAPLVHY---RTADDDFHEPVPFDLLDD 266
Query: 93 VPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYS 152
DD W+RTTD TPS IG+ + R P Y +E V + G +
Sbjct: 267 --DDPWIRTTDITPSGAIGRCGVYRISFSARF-WPKMDRALDYMRERRVAIV-DCGGGWG 322
Query: 153 --RSL---DLVPIVGPPDGI--------ALPYEILFKINLLVQNGCVAGPLLDSNFYRLV 199
R L D + P + L + +LF +N LV G + L F+ L+
Sbjct: 323 PRRGLTVRDELEFGEPMQDVFFCLQHAEGLKFPLLFMVNALVHKGIINQHQLTPEFFSLL 382
Query: 200 DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVY 259
V+++ + + + + C + L R P + D
Sbjct: 383 GRSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARN-------PKLLCSKVGDDHAE 435
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V R+ +TP+R Y PE+ SNRVLRH+ D FLR++F+DE + +++ L+ +
Sbjct: 436 VRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFMDEGMQVLNNNVLNSFTAPI 495
Query: 320 TDXXXXXXXXXXLST-------LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 372
+ L G + RK+ FLAFSS+QLR+ SAW FA T
Sbjct: 496 VKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSSNQLRDKSAWFFAEDRKTTV 555
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 432
IR+WMG F +NVAK+AAR+GQ FSS+ T+++ DE++ D ++ +Y+FSD
Sbjct: 556 EAIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEVDESFD---DVVHNEYIFSD 611
Query: 433 GIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA--DPTSSKKLSLRDSMRKYE 490
GIGK++ + A +VA + L DNPPSA+QIR+ G+KGV+A +L LR SMRK+E
Sbjct: 612 GIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVWQGHGDGTRLFLRPSMRKFE 671
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
S L+V++W+K+QP FLNRQ+I LLS+L + D IF + Q + L+ IL+D A E
Sbjct: 672 SNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQETMLSNLNNILSDRDVAFE 731
Query: 551 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
L S ++ N +L G++P EP L ML R+++L +L K RIF+P GR +M
Sbjct: 732 VLTT-SCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQLQDLLEKARIFVPKGRWLM 790
Query: 611 GCLDETRTLNYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGD 670
GCLDE L GQ F++ + + ++ G VV+AKNPCLHPGD
Sbjct: 791 GCLDELGVLEQGQCFIRATVPSLNSYFVKHGSRFSSTDKNTEVILGTVVIAKNPCLHPGD 850
Query: 671 VRVLKAVNVPALHHMVDCVVFPQKGMR 697
VR+L+AV+VP LHH+VDC+VFPQKG R
Sbjct: 851 VRILEAVDVPELHHLVDCLVFPQKGER 877
>TAIR|locus:2114633 [details] [associations]
symbol:RDR6 "AT3G49500" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IDA]
[GO:0016246 "RNA interference" evidence=IMP] [GO:0016441
"posttranscriptional gene silencing" evidence=TAS] [GO:0030422
"production of siRNA involved in RNA interference" evidence=TAS]
[GO:0048366 "leaf development" evidence=IGI] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IMP] [GO:0051607 "defense response to virus" evidence=IMP]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IMP] [GO:0009616 "virus induced gene silencing"
evidence=IMP] [GO:0031047 "gene silencing by RNA" evidence=IMP]
[GO:0048440 "carpel development" evidence=IGI] [GO:0048467
"gynoecium development" evidence=IMP] [GO:0048544 "recognition of
pollen" evidence=IMP] InterPro:IPR007855 Pfam:PF05183 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AC012329 GO:GO:0003723
GO:GO:0048440 GO:GO:0048366 GO:GO:0010492 GO:GO:0010267
GO:GO:0048544 GO:GO:0003887 GO:GO:0009616 EMBL:AL132964
GO:GO:0003968 eggNOG:NOG307726 HOGENOM:HOG000239464 KO:K11699
ProtClustDB:CLSN2682981 PANTHER:PTHR23079 EMBL:AF239718
EMBL:AF268093 IPI:IPI00524423 RefSeq:NP_190519.1 UniGene:At.65263
ProteinModelPortal:Q9SG02 SMR:Q9SG02 MINT:MINT-7014695
STRING:Q9SG02 PaxDb:Q9SG02 PRIDE:Q9SG02 EnsemblPlants:AT3G49500.1
GeneID:824112 KEGG:ath:AT3G49500 TAIR:At3g49500 InParanoid:Q9SG02
OMA:SCAEQGN PhylomeDB:Q9SG02 Genevestigator:Q9SG02 Uniprot:Q9SG02
Length = 1196
Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
Identities = 241/687 (35%), Positives = 373/687 (54%)
Query: 34 EYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEV 93
+Y+LEL +I + + L++QL +PR++ + + D +Y++ + +
Sbjct: 192 DYKLELLVRDIQTVRQYKTLHGFV--LILQLASSPRVWYR--TADDDIYDTVPGDLLDD- 246
Query: 94 PDDQWVRTTDFTPSNFIGQ--STGLCMELPYRLELPDFKENFAYYKESEDRFV----LET 147
DD W+RTTDFT IG+ S + + Y +L + F + E+R +
Sbjct: 247 -DDPWIRTTDFTQVGAIGRCHSYRVLISPRYENKLRTALDYFRMRRVQEERVRWPPRIRN 305
Query: 148 GSAYSRSL-DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPV 206
+ + D + +GI+ +EI+F +N ++ G L F+ L+ V
Sbjct: 306 EPCFGEPVSDHFFCIHHKEGIS--FEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDV 363
Query: 207 SISCIEHALDKLYHLKECCYEPSRWLTDQYRKY-MTSRSKPSSPAI----SLDDGLVYVH 261
+I+ ++H C Y+ R + D Y++ + +P + + + +
Sbjct: 364 NIASLKHL---------CTYK--RPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIR 412
Query: 262 RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS----PRGS 317
R+ +TP+R Y PE+ +SNRVLR ++ + FLR++F+DE + I+S LS P
Sbjct: 413 RLVITPTRAYCLPPEVELSNRVLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVK 472
Query: 318 SATDXXXXXXXXXXL---STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 374
T S L +G + RK+ FLAFS++QLR+ SAW FA ++
Sbjct: 473 DLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSD 532
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDG 433
I+ WMG F++ +NVAK AAR+G FSS+ T+ V E++ +PD++ + YVFSDG
Sbjct: 533 IKTWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDG 587
Query: 434 IGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYE 490
IG ++ + A +V K L + P A+QIRY G+KGVVA P+ S +L+LRDSM+K+
Sbjct: 588 IGTITPDLADEVMEKLKLDVHYSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFF 647
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
S+ T L++ +W+++QP FLNRQ+I+LLS LG+ DEIF Q + +L+ IL D A E
Sbjct: 648 SKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFE 707
Query: 551 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
L S E N +L G+KP EP L ML + R ++L LR K+RIF+ +GR +M
Sbjct: 708 VLTA-SCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLM 766
Query: 611 GCLDETRTLNYGQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGD 670
GCLDE L +GQ F+Q+S + +V+G V +AKNPCLHPGD
Sbjct: 767 GCLDEAGILEHGQCFIQVSKPSIENCFSKHGSRFKETKTDLEVVKGYVAIAKNPCLHPGD 826
Query: 671 VRVLKAVNVPALHHMVDCVVFPQKGMR 697
VR+L+AV+VP LHHM DC++FPQKG R
Sbjct: 827 VRILEAVDVPQLHHMYDCLIFPQKGDR 853
>UNIPROTKB|G4NJ50 [details] [associations]
symbol:MGG_02748 "RNA-dependent RNA polymerase 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR007855 Pfam:PF05183 EMBL:CM001237
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 RefSeq:XP_003721007.1
EnsemblFungi:MGG_02748T0 GeneID:5050479 KEGG:mgr:MGG_02748
Uniprot:G4NJ50
Length = 1407
Score = 736 (264.1 bits), Expect = 9.2e-72, P = 9.2e-72
Identities = 180/542 (33%), Positives = 281/542 (51%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ L +E+ +++ + + +A P + F + R + +E+ +D+ L Y
Sbjct: 371 VQLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKL----Y 426
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
P + D+ S P L +V VTPS +Y P + +NRVLRH
Sbjct: 427 NPMQLFKDEG----ASTYWPDITPEELPQYCTMTRKVTVTPSTMYLSSPMVETTNRVLRH 482
Query: 287 FRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDXXXXXXXXXXLSTLRNGILIGDRK 345
+ D FLR+ F DE ++H+ P A D L+NGI IGDR
Sbjct: 483 YNEHKDRFLRVQFTDELPTGRLHA----PNDLGADDEIFSRVYR----VLKNGIHIGDRH 534
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
++FLAF SSQ+RE+S + F +T IR WMG F IRNV KYAARLGQ FS+++
Sbjct: 535 YKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSI 594
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
V M I+ IPD++ K Y F+DG+GK+S+ +A ++ L D PSAFQ R GG
Sbjct: 595 DRVAMPWIKTIPDIE----KNGYCFTDGVGKISSLWAVVISENLKL-DYIPSAFQFRMGG 649
Query: 466 YKGVVAA-DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 524
KGV+ + +++ +R S K+E++ ++L+V+ S + LNRQ IS+L++LG+ +
Sbjct: 650 CKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKN 709
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMM 583
E+FE E + + + + D A L + + + TN L L+ G+ EPF+ M
Sbjct: 710 EVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTM 769
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGEXXXX 643
L+ +R + L+ K R+ + G ++GC+DET+TL+ + S +L+G
Sbjct: 770 LRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLP 829
Query: 644 XXXX------XXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
++ GL +V +NP LHPGD+RV++A++VP L H+ D VVF Q G R
Sbjct: 830 EIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDR 889
Query: 698 YI 699
I
Sbjct: 890 DI 891
>POMBASE|SPAC6F12.09 [details] [associations]
symbol:rdp1 "RNA-directed RNA polymerase Rdp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase
activity" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005721 "centromeric heterochromatin" evidence=IDA] [GO:0005724
"nuclear telomeric heterochromatin" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0030702 "chromatin silencing at
centromere" evidence=IMP] [GO:0031047 "gene silencing by RNA"
evidence=IMP] [GO:0031048 "chromatin silencing by small RNA"
evidence=IDA] [GO:0031060 "regulation of histone methylation"
evidence=IMP] [GO:0031380 "nuclear RNA-directed RNA polymerase
complex" evidence=IDA] [GO:0031934 "mating-type region
heterochromatin" evidence=IDA] [GO:0034613 "cellular protein
localization" evidence=IMP] [GO:0045141 "meiotic telomere
clustering" evidence=IMP] [GO:0071276 "cellular response to cadmium
ion" evidence=IMP] [GO:0071585 "detoxification of cadmium ion"
evidence=IMP] InterPro:IPR007855 Pfam:PF05183 PomBase:SPAC6F12.09
GO:GO:0005829 EMBL:CU329670 GO:GO:0034613 GenomeReviews:CU329670_GR
GO:GO:0071276 GO:GO:0071585 GO:GO:0003723 GO:GO:0030702
GO:GO:0000070 GO:GO:0031048 GO:GO:0005721 GO:GO:0031934
GO:GO:0005724 GO:GO:0045141 GO:GO:0031060 GO:GO:0031380
GO:GO:0003968 eggNOG:NOG307726 KO:K11699 PANTHER:PTHR23079
PIR:T11660 RefSeq:NP_593295.1 IntAct:O14227 STRING:O14227
EnsemblFungi:SPAC6F12.09.1 GeneID:2542198 KEGG:spo:SPAC6F12.09
OMA:RISAQNT OrthoDB:EOG44QX81 NextBio:20803268 Uniprot:O14227
Length = 1215
Score = 547 (197.6 bits), Expect = 1.1e-51, P = 1.1e-51
Identities = 148/458 (32%), Positives = 238/458 (51%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL-DKIHSTDLSPRG 316
+++ ++ VTP+ + + NRV+R+F+ + F+R+ DE KI RG
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDEYYKQKI-------RG 504
Query: 317 SSATDXXXXXXXXXXLSTLRN-GILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 375
S D + L GI +G++ +EFLAF +SQLRE A+ FAS L A +I
Sbjct: 505 GS--DGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQI 562
Query: 376 REWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIG 435
REWMG+F EI +V+KYAAR+GQ FS++KE +D I + D+ + + F+DG+G
Sbjct: 563 REWMGDFSEINSVSKYAARMGQCFSTTKEINRFCVD-ISLQDDIV----RNNHCFTDGVG 617
Query: 436 KVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA-ADPTSSK--KLSL---RDSMRKY 489
S R+++ + D PSAFQ R GGYKGV++ A PT + + +L R S K+
Sbjct: 618 MASLSVIRRLSLEVKNHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKF 677
Query: 490 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 549
+S + L+V+ S++ LN QLI+LL LG+ +F + R + +++ + K+
Sbjct: 678 KSFHSTLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSI 737
Query: 550 EAL-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 608
L + + +T I+ + + G+ + F +L + L ++ K ++ +P G
Sbjct: 738 LMLRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAY 797
Query: 609 MMGCLDETRTL--NYGQVFVQISGAGYRQLHGEXXXXXXXXXXX--XXIVQGLVVVAKNP 664
++G DET TL +Y + + + Q+ ++ GL +VA+NP
Sbjct: 798 LLGVADETGTLKGHYDDAVLSVPEI-FIQITDTSTSFGSYSTGKLKTRVIVGLCIVARNP 856
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
LHPGDVRV KAV L H+ + +VFP G R I M
Sbjct: 857 SLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAM 894
>WB|WBGene00004510 [details] [associations]
symbol:rrf-3 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007855 Pfam:PF05183 EMBL:Z48334 GO:GO:0003968
PANTHER:PTHR23079 EMBL:Z66500 GeneTree:ENSGT00390000016620
RefSeq:NP_495713.2 IntAct:G5EE53 EnsemblMetazoa:F10B5.7
GeneID:174315 KEGG:cel:CELE_F10B5.7 CTD:174315 WormBase:F10B5.7
OMA:HISKAKI Uniprot:G5EE53
Length = 1765
Score = 536 (193.7 bits), Expect = 3.7e-50, P = 3.7e-50
Identities = 155/493 (31%), Positives = 245/493 (49%)
Query: 235 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
QY + + S + A L V V +V VTPSR+ PE+ + NRV+R F D
Sbjct: 653 QYERLLKGESLQDVGLAKPLPKNCVSVAKVIVTPSRILLMAPEVMMVNRVVRRFGPDYA- 711
Query: 294 FLRISFIDEDLDKIHSTDLSPRGSSATDXXXXXXXXXXLSTLRNGILIGDRKFEFLAFSS 353
LR F D++L ++ D S D TL+NGI + DR + FL +S+
Sbjct: 712 -LRCVFRDDNLGRLAIRDFSINN---IDHMSNIVTEGIYLTLKNGIQVADRVYSFLGWSN 767
Query: 354 SQLRESSAWMFASRYGL-------TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 406
SQ+R+ +++A R T +IR WMG+FR+ +V K +R+GQ F+ ++ T+
Sbjct: 768 SQMRDQGCYLYAPRVNALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCFTQAQPTV 827
Query: 407 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 466
+ + PD++ + + KY FSDG G++S + A ++ LK+ P+ FQ+R+ G+
Sbjct: 828 RLERHHWIVEPDIEGGV-ENKYCFSDGCGRISIKLATHISKILQLKE-VPACFQVRFKGF 885
Query: 467 KGVVAADPT-----SSKKLSLRDSMRKYES---ELTK--LDVLAWSKYQPCFLNRQLISL 516
KG++ DPT + K+ R S +K+ EL L+V+ ++ P LNR I++
Sbjct: 886 KGILVIDPTIDDIINMPKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFITI 945
Query: 517 LSTLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 566
L + I + + +RE + ++ + A+E + + + N +
Sbjct: 946 LDQVSEKQSASSHRRITNRVHYYLERELCSLSNMLINENQAAEELVNRTNLAIDWNAASK 1005
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQV 624
G++ +P + ML + ++ +K +IF+P GRSM G +DET L YGQV
Sbjct: 1006 R--AGFELSVDPLIRDMLFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQV 1063
Query: 625 FVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 684
F+Q S + RQ + G V++ KNPC PGDVRV AV PAL H
Sbjct: 1064 FIQYSPS-IRQTSNRPI-----------LKTGKVLITKNPCHVPGDVRVFDAVWQPALAH 1111
Query: 685 MVDCVVFPQKGMR 697
+VD VVFPQ G R
Sbjct: 1112 LVDVVVFPQHGPR 1124
>ASPGD|ASPL0000040001 [details] [associations]
symbol:rrpC species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR007855 Pfam:PF05183
EMBL:BN001306 GO:GO:0003968 eggNOG:NOG307726 KO:K11699
PANTHER:PTHR23079 EMBL:AACD01000048 RefSeq:XP_660321.1
EnsemblFungi:CADANIAT00010398 GeneID:2874470 KEGG:ani:AN2717.2
HOGENOM:HOG000166092 OMA:KHKARIP OrthoDB:EOG4VMJPG Uniprot:Q5B9R3
Length = 1203
Score = 452 (164.2 bits), Expect = 3.8e-40, Sum P(2) = 3.8e-40
Identities = 162/565 (28%), Positives = 267/565 (47%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVD-------PYRAPVSISCIEHALDKLYHL 221
LP+ ILF++ LV NG + ++ +L R P+S++ ++ L L
Sbjct: 286 LPFGILFQLQALVYNGYLPPNIVLRLTRKLASITKTRKVQGRRPISVNSMKR-LFNLIDW 344
Query: 222 KECCYEPSRWLTDQYRKYMTSRSKP----SSPAISLDDG---LVYVHRVQVTPSRVYFCG 274
+P + + + +T K +S A +L L ++HRV VTPSR+ G
Sbjct: 345 PSPFGDPEEFSIKRLLEVITGNDKDLGEGASEAEALFQPAPHLAHIHRVVVTPSRITLHG 404
Query: 275 PEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDXXXXXXXXXXLST 334
PE NR+LR F + F+R+ F DE+ + I+ +PR +++ +
Sbjct: 405 PETEPLNRILRRFPNHHEYFIRVQFCDENGEDIY---FNPRINNSL------IFARFKNV 455
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGLTAA--EIREWMGNFREIRNVA 389
NG I R + FL FS S LR SAW F G + I + +G F EI + A
Sbjct: 456 FANGFQIAGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQSYFTIIKAIGRFSEITSPA 515
Query: 390 KYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
+ AAR+GQ+FS + +++ + I + IPDV++ G+ VFSDG+G +SA+ +
Sbjct: 516 RCAARIGQAFSETPFAVNLKENGIRVLRIPDVQVG-GR---VFSDGVGTISAKAVDIIHG 571
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE-LTKLDVL-AWSKY 504
++ P+ FQIR GG KG+++ DP K+ +R SM K++++ +++ + SK
Sbjct: 572 VLPPRNGAPTCFQIRLGGAKGMLSLDPRLRGSKICIRPSMTKFQTDDQVNVEICGSGSKP 631
Query: 505 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNIL 564
P FLNRQ+I +L +G+ E F Q + QL ++ S + +
Sbjct: 632 IPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATATTKNTATFVKGQSVADCVKLY 691
Query: 565 KE-LLICGYKPDAE--PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 621
+ LL K D + PFL +++ +L L+ K RI + G ++ G +DET LN
Sbjct: 692 RLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKARIPVHKGITLYGVMDETGFLNE 751
Query: 622 GQVFVQISGAGYRQLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
+VFV Y+ + ++V ++P LH GD++ V P
Sbjct: 752 NEVFVT-----YQAMDRLAAPPQNCR----------LLVTRSPALHNGDIQYPYNVVPPK 796
Query: 682 LHHMV---DCVVFPQKGMRYILTML 703
H + +C+VF QKG R + + L
Sbjct: 797 GHPLQQQRNCIVFSQKGTRDLPSQL 821
Score = 52 (23.4 bits), Expect = 3.8e-40, Sum P(2) = 3.8e-40
Identities = 16/51 (31%), Positives = 24/51 (47%)
Query: 22 RKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQ 72
RK N + HLG R+++ I+E+ W LL+ L+ P FQ
Sbjct: 157 RKRNITV-HLGNTPRIKIPLNTIYELV-----WSKHGSLLLTLVTVPLFFQ 201
>WB|WBGene00004509 [details] [associations]
symbol:rrf-2 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] InterPro:IPR007855 Pfam:PF05183 GO:GO:0003968
PANTHER:PTHR23079 GeneTree:ENSGT00390000016620 EMBL:AL132848
EMBL:Z81571 RefSeq:NP_493057.1 ProteinModelPortal:G5EFA8
EnsemblMetazoa:M01G12.12 GeneID:173092 KEGG:cel:CELE_M01G12.12
CTD:173092 WormBase:M01G12.12 NextBio:878243 Uniprot:G5EFA8
Length = 1579
Score = 261 (96.9 bits), Expect = 7.2e-37, Sum P(2) = 7.2e-37
Identities = 106/410 (25%), Positives = 181/410 (44%)
Query: 121 PYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDG--IALPY--EILFK 176
PY L P +++A+ + F+ + + +D I DG A+ Y E L
Sbjct: 312 PY-LRYPTSSKSYAF-----ECFIYNCFPSKMKIIDAQSI-NENDGRQFAITYLIECLLS 364
Query: 177 INLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE-PSRWLTDQ 235
+V++ + + F L+ Y C E AL+ L +L + S W
Sbjct: 365 RGAIVKDQVLTDEICWGQFLGLITHYYLENDKLC-EAALEDLIYLIDGRKRIGSIWKCFH 423
Query: 236 Y--RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
+K + + +++G V +V TP+RV + PE+ + NRVLR+F RD +
Sbjct: 424 KICQKRLVMQLTNGMSEQEIEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTH 483
Query: 294 FLRISFIDEDLDKIHST------DLSPRGSSATDXXXXXXXXXXLSTLRNGILIGDRKFE 347
LR++F D++ K+ + D+ + L + + D
Sbjct: 484 VLRVTFRDDNNRKMRANATGELLDICVKKYLEHGIVVANRDFGFLGC--SSSQMRDNGAY 541
Query: 348 FLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET-L 406
F+ ++ R +A S++ +R +GNF +I N+ K ARLGQ F+ S+ T +
Sbjct: 542 FMVKNTDN-RHKNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRLTGV 600
Query: 407 SVHMDEIEIIPDVK--IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYG 464
S+ D + D+ ++Y FSDG+G +S EFA++V+ + PS FQ RY
Sbjct: 601 SLGPDNYCLTHDLSGGRSSNGSEYTFSDGVGMMSYEFAQEVSRLMSFGRSVPSCFQFRYR 660
Query: 465 GYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 514
G KGV+A DP K+ R+ K+ L+K + Q F +Q++
Sbjct: 661 GMKGVLAIDPLLDKE---RNWQEKHGISLSKNIKCVFRPSQIKFEGKQIL 707
Score = 229 (85.7 bits), Expect = 7.2e-37, Sum P(2) = 7.2e-37
Identities = 76/237 (32%), Positives = 114/237 (48%)
Query: 479 KLSLRDSMRKYESELTKLDVLAWSKYQ-PCF--LNRQLISLLSTLGIWDEIFEKKQREAV 535
K R S K+E + D + KY P LN+ LI++L D++ E + E
Sbjct: 691 KCVFRPSQIKFEGKQILGDQVEMVKYSSPVLVALNKPLINIL------DQVSEMQSLECH 744
Query: 536 RQLDAILTDPLKAQE---ALELMSPGENTNILKEL----------LICGYKPDAEPFLSM 582
R++ + + + + Q A ++ N LKE I G+ EPF
Sbjct: 745 RRITSRIEELMDLQTLSFAKQMTDEACFRNKLKEFPRRIDIDYLRTIWGFTLSNEPFFRS 804
Query: 583 MLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGEX 640
+++ + + K +I IP+ GRSM+G +DET L YGQVFVQ + +R +
Sbjct: 805 LVKASIKFAITKQLFKEQIQIPSELGRSMLGVVDETGILQYGQVFVQYT-KNHRNILPPR 863
Query: 641 XXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
IV G V++ KNP + PGDVR+ +AV++P LHH+ D VVFPQ G R
Sbjct: 864 DSNRKVLGSE--IVTGTVLLTKNPGIVPGDVRIFEAVDIPELHHLCDVVVFPQHGPR 918
>WB|WBGene00004508 [details] [associations]
symbol:rrf-1 species:6239 "Caenorhabditis elegans"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS;IDA] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017151
"DEAD/H-box RNA helicase binding" evidence=IPI] [GO:0005844
"polysome" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IDA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IDA] InterPro:IPR007855 Pfam:PF05183
GO:GO:0005634 GO:GO:0048471 GO:GO:0005844 GO:GO:0030422 EMBL:Z78419
GO:GO:0003968 PANTHER:PTHR23079 UniGene:Cel.19452 GeneID:172523
KEGG:cel:CELE_F26A3.8 CTD:172523 GeneTree:ENSGT00390000016620
EMBL:AF159144 RefSeq:NP_001250555.1 ProteinModelPortal:G5ECM1
EnsemblMetazoa:F26A3.8a WormBase:F26A3.8a OMA:QIQIPKE
NextBio:875887 Uniprot:G5ECM1
Length = 1601
Score = 237 (88.5 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 74/243 (30%), Positives = 117/243 (48%)
Query: 475 TSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFL---NRQLISLLSTLGIWDEIFEK 529
TS K K R S K++++ D + K+ L N+ I++L D++ E
Sbjct: 704 TSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNKPFINIL------DQVSEM 757
Query: 530 KQREAVRQLDAILTDPLKAQEALELMSPGENT---NILKEL----------LICGYKPDA 576
+ + +++ + + + + Q E T N LKE + G+ +
Sbjct: 758 QSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFPRRIDIDNLRTMWGFTLSS 817
Query: 577 EPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYR 634
EPF +++ + + K +I IP+ GRSM+G +DET L YGQ+FVQ + +
Sbjct: 818 EPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDETGRLQYGQIFVQYTKNYKK 877
Query: 635 QLHGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 694
+L IV G V++ KNPC+ PGDVR+ +AV++P LHHM D VVFPQ
Sbjct: 878 KLPPRDSNNKVHGSE---IVTGTVLLTKNPCIVPGDVRIFEAVDIPELHHMCDVVVFPQH 934
Query: 695 GMR 697
G R
Sbjct: 935 GPR 937
Score = 231 (86.4 bits), Expect = 1.9e-34, Sum P(2) = 1.9e-34
Identities = 73/232 (31%), Positives = 110/232 (47%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST---D 311
+G V +V TP+RV + PE + NRVLR F +D LR++F D++ K+ S
Sbjct: 459 EGYQRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRSNVTGK 518
Query: 312 LSPRGSSATDXXXXXXXXXXLSTL--RNGILIGDRKFEFLAFSSSQL-RESSAWMFASRY 368
L R ++ L N + + + + F+ QL R AS
Sbjct: 519 LLDRTANKYLEHGVRIANREYGFLGCSNSQMRDNGAYFMMRFTDKQLDRFYKCNPTASNI 578
Query: 369 GLTAA--EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK- 425
E+R +G F EI NV K ARLGQ F+ S+ T V + + + G+
Sbjct: 579 NFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLT-GVGLGRDDYCSTYDLTGGRA 637
Query: 426 ---TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP 474
++Y FSDG+G +S +FA++V+ PS FQIR+ G KGV+A +P
Sbjct: 638 TNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVIAIEP 689
Score = 39 (18.8 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 275 PEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 308
P + N + HF + +R +ID D H
Sbjct: 209 PRVEGCNTCV-HFEVNCPPLIRKGYIDNDKSSFH 241
>ASPGD|ASPL0000071805 [details] [associations]
symbol:rrpB species:162425 "Emericella nidulans"
[GO:0005724 "nuclear telomeric heterochromatin" evidence=IEA]
[GO:0005721 "centromeric heterochromatin" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0031380 "nuclear RNA-directed
RNA polymerase complex" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] [GO:0045141 "meiotic telomere
clustering" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0031048 "chromatin silencing by
small RNA" evidence=IEA] [GO:0031060 "regulation of histone
methylation" evidence=IEA] [GO:0071585 "detoxification of cadmium
ion" evidence=IEA] [GO:0034613 "cellular protein localization"
evidence=IEA] [GO:0071276 "cellular response to cadmium ion"
evidence=IEA] [GO:0030702 "chromatin silencing at centromere"
evidence=IEA] InterPro:IPR007855 Pfam:PF05183 EMBL:BN001303
GO:GO:0003968 PANTHER:PTHR23079 EnsemblFungi:CADANIAT00005632
Uniprot:C8VAM8
Length = 869
Score = 219 (82.2 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 51/139 (36%), Positives = 83/139 (59%)
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSS-KKLSLR 483
Y+FSDG+G++S A+ V S+ +K PPSA+Q R G KG++ P + +++ +R
Sbjct: 343 YIFSDGVGRISKFLAQIVKSELKIKTPTKEPPSAYQFRLVGCKGMLIVFPQARPQEVHIR 402
Query: 484 DSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD-AIL 542
S K+ + L+++ WS++ LNRQLI +LSTLGI D++F K + +R LD A+
Sbjct: 403 KSQFKFAALSQGLEIIRWSQFTVASLNRQLILVLSTLGITDKVFHLKLKTMLRNLDEAME 462
Query: 543 TDPLKAQEALELMSPGENT 561
+DP A + + P + T
Sbjct: 463 SDPKAAHLLRKYVDPNQVT 481
Score = 173 (66.0 bits), Expect = 6.2e-26, Sum P(3) = 6.2e-26
Identities = 52/160 (32%), Positives = 83/160 (51%)
Query: 434 IGKVSAEFAR-KVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYES 491
I K A+ + ++ K K+ PPSA+Q R G KG++ P + +++ +R S K+ +
Sbjct: 352 ISKFLAQIVKSELKIKTPTKE-PPSAYQFRLVGCKGMLIVFPQARPQEVHIRKSQFKFAA 410
Query: 492 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD-AILTDPLKA-- 548
L+++ WS++ LNRQLI +LSTLGI D++F K + +R LD A+ +DP A
Sbjct: 411 LSQGLEIIRWSQFTVASLNRQLILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHL 470
Query: 549 --------QEALELMSP--GENTNILKELLICGYKPDAEP 578
Q L + P GE I++ + I P P
Sbjct: 471 LRKYVDPNQVTLTIYLPKNGEKYEIIEGICILARNPSLHP 510
Score = 152 (58.6 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
I++G+ ++A+NP LHPG +RV++AVN P LHH+ D VV P+ G R I +M
Sbjct: 495 IIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASM 544
Score = 104 (41.7 bits), Expect = 5.2e-31, Sum P(3) = 5.2e-31
Identities = 38/128 (29%), Positives = 62/128 (48%)
Query: 278 NVSNRVLRHFRRDIDNFLRISFID-EDLDKIHSTDLSPRGSSATDXXXXXXXXXXLSTLR 336
++SN V+R + DNFLR+ F D + + +IH+T D L
Sbjct: 247 DISNCVIRRYANLADNFLRVRFTDAKHIGRIHAT---------VDNTMDEVLTRIKRALA 297
Query: 337 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA--AEIREWMGN---FRE-IRNVAK 390
NGI IG ++EFLAF +S S+ + G TA +I + GN F + + ++K
Sbjct: 298 NGITIGSTRYEFLAFGNSSSCFSTTRAIS---GCTAHVKKIDDIEGNGYIFSDGVGRISK 354
Query: 391 YAARLGQS 398
+ A++ +S
Sbjct: 355 FLAQIVKS 362
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 320 (117.7 bits), Expect = 1.4e-24, P = 1.4e-24
Identities = 105/380 (27%), Positives = 181/380 (47%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-PRGSS 318
+ V +TPSR F P + S R +R F NF+ + ++E L+ + + P +
Sbjct: 1208 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESLEPLQGVNNKHPLHEN 1265
Query: 319 ATDXXXXXXXXXXLSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
L GIL+G + + + S+SQLRE S+W +++ G +I W
Sbjct: 1266 RIK-----------PILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 1312
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
G + NV K+ +G FS++ T+++ + I I D+ + +VF++G G++
Sbjct: 1313 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDIT----RNTHVFTEGCGEIG 1367
Query: 439 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE--- 490
E A+ + + + A+Q+R GG KG++ A DP+ + +R SM K+
Sbjct: 1368 PELAKHLNENYNFRPST-CAYQVRIGGNKGMLVVNNQAPDPSG---IYIRPSMVKFNPIV 1423
Query: 491 --SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 548
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D +
Sbjct: 1424 CGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNAS 1483
Query: 549 QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 608
++A+ P EL Y+ +P++ +L + K+ ++ K I I + R
Sbjct: 1484 KQAIVEFFPDITEG---EL----YQ---DPYIRRILISLYKLKMERIQQKCHIEIKDSRM 1533
Query: 609 MMGCLDETRTLNYGQVFVQI 628
++G D T +L VFVQ+
Sbjct: 1534 LLGVCDPTNSLPPNTVFVQL 1553
Score = 163 (62.4 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 40/119 (33%), Positives = 61/119 (51%)
Query: 577 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 636
+P++ +L + K+ ++ K I I + R ++G D T +L VFVQ+
Sbjct: 1502 DPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFVQLE------- 1554
Query: 637 HGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
E +++GLV+V KNPC HPGDVR LKAV+ L H+ + +VF KG
Sbjct: 1555 --EEDEDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNLRLRHLRNVLVFSTKG 1611
Score = 47 (21.6 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 353 SSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 412
S+ + ++S +MF SR + + M +++E N+ + + K+ S +D
Sbjct: 93 STTVNDNSYYMFDSRKHDLSVQRPYLMCSYKECYNIIGF-----YHMNPFKKVFSFRLDH 147
Query: 413 IEIIPDVKIEIGKTKYVFSDGI 434
+ I D K E K+ ++ I
Sbjct: 148 AKTILDFKYEDKPWKFFLNNPI 169
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 313 (115.2 bits), Expect = 8.3e-24, P = 8.3e-24
Identities = 105/380 (27%), Positives = 179/380 (47%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-PRGSS 318
+ V +TPSR F P + S R +R F NF+ + ++E L+ + + P +
Sbjct: 1193 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIVVKIVNESLEPLQGVNNKHPLHEN 1250
Query: 319 ATDXXXXXXXXXXLSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
L GIL+G + + S+SQLRE S+W +++ G +I W
Sbjct: 1251 RIK-----------PILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 1297
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
G + NV K+ +G FS++ T+++ + I I D+ + + F++G G++
Sbjct: 1298 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQDIT----RNTHEFTEGCGEIG 1352
Query: 439 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE--- 490
E A+ + + + A+Q+R GG KGV+ A DP+ + +R SM K+
Sbjct: 1353 PELAKHLNENYNFRPST-CAYQVRIGGNKGVLVVNNQAPDPSG---IYIRPSMVKFNPID 1408
Query: 491 --SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 548
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D +
Sbjct: 1409 CGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTNAS 1468
Query: 549 QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 608
++A+ P EL Y+ +P++ +L + K+ ++ K I I + R
Sbjct: 1469 KQAIVEFFPDITEG---EL----YQ---DPYIRRILISLYKLKMERIQQKCHIEIKDSRM 1518
Query: 609 MMGCLDETRTLNYGQVFVQI 628
++G D T +L VFVQ+
Sbjct: 1519 LLGVCDPTNSLPPNTVFVQL 1538
Score = 165 (63.1 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 41/119 (34%), Positives = 61/119 (51%)
Query: 577 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 636
+P++ +L + K+ ++ K I I + R ++G D T +L VFVQ L
Sbjct: 1487 DPYIRRILISLYKLKMERIQQKCHIEIKDSRMLLGVCDPTNSLPPNTVFVQ--------L 1538
Query: 637 HGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
E +++GLV+V KNPC HPGDVR LKAV+ L H+ + +VF KG
Sbjct: 1539 EEEDEDDDDDGRKYEKVIEGLVMVIKNPCTHPGDVRYLKAVDNIRLRHLRNVLVFSTKG 1597
Score = 38 (18.4 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 493 LTKLDVLAWSKYQPCFLNRQLISLLSTL-GIWDEI---FEK---KQREAVRQLDAILTD 544
LT+LD+L S Q L +L+ L + G +++ FEK + R+ + L+ ++D
Sbjct: 586 LTRLDLLMQSTNQENELYNKLLELRYYISGQYEDRESNFEKGSTRYRKLISSLEYAISD 644
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 279 (103.3 bits), Expect = 3.7e-20, P = 3.7e-20
Identities = 103/392 (26%), Positives = 181/392 (46%)
Query: 251 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 310
I ++G V ++ + VTPSR+ P + + NR+LR F + F+ +F DE+L+
Sbjct: 1065 IQSNNGWVLINEIFVTPSRIVLKPPRLTLGNRILRKFSPE--KFILFNFTDENLEPFRGL 1122
Query: 311 DLSPRGSSATDXXXXXXXXXXLSTLRNGILI---GDRKFEFLAFSSSQLRESSAWMFASR 367
+ S S T NGI I +K+ F+ S SQ+R SAW
Sbjct: 1123 NKS---SPLTKTIERI--------FNNGIEIIQGSGKKYFFIGCSQSQVRNYSAWFVLED 1171
Query: 368 YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 427
W G E + K L FS++ ++ ++ +IE+IPD+ I K
Sbjct: 1172 KVTNEKSALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVIY--KIEMIPDI---ISKEG 1226
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSM 486
+ F++G G + ++ + + + A+QIR GG KGV+ + + L +R SM
Sbjct: 1227 HNFTEGCGFIGSKLVELINQQNNYNSST-CAYQIRLGGSKGVLVLNENIDEMSLQIRPSM 1285
Query: 487 RKYE---------SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 537
K+E E L++++ S C LNRQ I+LLS G+ D F + + Q
Sbjct: 1286 SKFELDYKSGQLDEEHKTLEIVSASTTSRCKLNRQAITLLSNAGVEDSTFLQMLEVELNQ 1345
Query: 538 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFL-SMMLQTFRASKLLELR 596
L D ++E L G+ + E Y+ + ++ S++L+ ++ SKL++++
Sbjct: 1346 NAQTLVDVNLSKELL-----GDFFQHITE-----YELFNDYYIRSILLKLYK-SKLIKIQ 1394
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 628
K I + R+++G D + TL V++++
Sbjct: 1395 DKCWIEVKESRNLLGVCDTSGTLPEDTVYIEV 1426
Score = 189 (71.6 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 80/298 (26%), Positives = 142/298 (47%)
Query: 412 EIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA 471
+IE+IPD+ I K + F++G G + ++ + + + A+QIR GG KGV+
Sbjct: 1214 KIEMIPDI---ISKEGHNFTEGCGFIGSKLVELINQQNNYNSST-CAYQIRLGGSKGVLV 1269
Query: 472 ADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKK 530
+ + L +R SM K+E LD + + +++S +T K
Sbjct: 1270 LNENIDEMSLQIRPSMSKFE-----LDYKS-GQLDEEHKTLEIVSASTTSRC------KL 1317
Query: 531 QREAVRQL-DAILTDPLKAQEA-LELMSPGE---NTNILKELL------ICGYKPDAEPF 579
R+A+ L +A + D Q +EL + + N+ KELL I Y+ + +
Sbjct: 1318 NRQAITLLSNAGVEDSTFLQMLEVELNQNAQTLVDVNLSKELLGDFFQHITEYELFNDYY 1377
Query: 580 L-SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 638
+ S++L+ ++ SKL++++ K I + R+++G D + TL V++++ +L
Sbjct: 1378 IRSILLKLYK-SKLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEVE-----ELDP 1431
Query: 639 EXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 696
++ G V V KNPC HPGDVR LKA++ P L+ + + F GM
Sbjct: 1432 ------IDNLMKPKVIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGM 1483
>WB|WBGene00001214 [details] [associations]
symbol:ego-1 species:6239 "Caenorhabditis elegans"
[GO:0007186 "G-protein coupled receptor signaling pathway"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000910 "cytokinesis" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IGI] [GO:0031081
"nuclear pore distribution" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] InterPro:IPR007855 Pfam:PF05183 GO:GO:0009792
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0010171
GO:GO:0048477 GO:GO:0007283 GO:GO:0000910 GO:GO:0007281
GO:GO:0000794 GO:GO:0043186 GO:GO:0031081 EMBL:Z78419 GO:GO:0003968
PANTHER:PTHR23079 BRENDA:2.7.7.48 GeneTree:ENSGT00390000016620
EMBL:AF159143 PIR:T21381 RefSeq:NP_492132.1 UniGene:Cel.23243
ProteinModelPortal:G5EBQ3 IntAct:G5EBQ3 EnsemblMetazoa:F26A3.3
GeneID:172524 KEGG:cel:CELE_F26A3.3 CTD:172524 WormBase:F26A3.3
OMA:LRSMMEN NextBio:875891 GO:GO:0070090 Uniprot:G5EBQ3
Length = 1632
Score = 226 (84.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 99/371 (26%), Positives = 167/371 (45%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
+G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+ +
Sbjct: 486 EGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMRTN---- 541
Query: 315 RGSSATDXXXXXXXXXXLSTL-RN-GIL------IGDRKFEFLA-FSSSQLRESSAWMFA 365
+ S+ + ++ RN G L + D F+ +SSSQ RE ++
Sbjct: 542 KTSTMLEKTVNQYLKNGITVAGRNFGYLGSSNSQMRDNGAYFMEKYSSSQCREYER-IYQ 600
Query: 366 SRYGLT----AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
+ +T R+ +G F I N+ K ARLGQ F+ S+ + V+++ + +
Sbjct: 601 IKPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLERCTYMTTYDL 659
Query: 422 EIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 477
GK +Y FSDG+G +S FA+ V+ PS FQ R+ G KGV++ +P
Sbjct: 660 TGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKGVPSCFQFRFRGMKGVISIEP--- 716
Query: 478 KKLSLRDSMRKYESE--LTK-LDVLAWSKYQPCFLNRQLISLLSTLGIWDEI----FEKK 530
L D++R++ ++K D +WS C I +S D++ +
Sbjct: 717 ----LLDNLRQWSISYNISKPSDDSSWSLN--CMFRPSQIKFISKRHPRDQVEIVKYSSP 770
Query: 531 QREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRAS 590
A+ + + D + ++LE TN ++ELL A+ M+ +TF +
Sbjct: 771 VPVALNKPFINILDQVSEMQSLECHR--RVTNRIEELLDRQMLSFAQ---QMVDETFCRN 825
Query: 591 KLLELRTKTRI 601
+L EL + I
Sbjct: 826 RLKELPRRVDI 836
Score = 224 (83.9 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 74/241 (30%), Positives = 118/241 (48%)
Query: 473 DPTSSKKLSLRDSMRKYESEL---TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEK 529
D + S R S K+ S+ +++++ +S P LN+ I++L + + +
Sbjct: 736 DSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSSPVPVALNKPFINILDQVSEMQSL--E 793
Query: 530 KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL----------LICGYKPDAEPF 579
R +++ +L D A +++ N LKEL G+ +EPF
Sbjct: 794 CHRRVTNRIEELL-DRQMLSFAQQMVDETFCRNRLKELPRRVDIDYLRTTWGFTLSSEPF 852
Query: 580 L-SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQL 636
S++ + + S +LR K +I IP GRSM+G +DET L YGQ+FVQ + + L
Sbjct: 853 FRSLIKASIKFSITRQLR-KEQIPIPCDLGRSMLGVVDETGRLQYGQIFVQYT----KNL 907
Query: 637 HGEXXXXXXXXXXXXXIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 696
++ G V++ KNPC+ GDVR+ +AV++P LHHM D VVFPQ G
Sbjct: 908 ----ALKLPPKNAARQVLTGTVLLTKNPCIVAGDVRIFEAVDIPELHHMCDVVVFPQHGP 963
Query: 697 R 697
R
Sbjct: 964 R 964
>TAIR|locus:2052020 [details] [associations]
symbol:AT2G19930 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
[GO:0009410 "response to xenobiotic stimulus" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0009944 "polarity specification of
adaxial/abaxial axis" evidence=RCA] [GO:0010014 "meristem
initiation" evidence=RCA] [GO:0010075 "regulation of meristem
growth" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0048522 "positive regulation of cellular process"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 EMBL:AK229381
IPI:IPI00786210 PIR:H84582 RefSeq:NP_179583.3 UniGene:At.39772
EnsemblPlants:AT2G19930.1 GeneID:816512 KEGG:ath:AT2G19930
TAIR:At2g19930 HOGENOM:HOG000082682 OMA:LANYMAR
Genevestigator:O82188 Uniprot:O82188
Length = 977
Score = 95 (38.5 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 654 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMR 697
+ G V+V +NP LH GD+ +LKA V AL V V FPQKG R
Sbjct: 625 ISGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPR 672
Score = 70 (29.7 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 50/200 (25%), Positives = 84/200 (42%)
Query: 454 NPPSAFQIR--YGGY--KGVVAADPT-SSKKLSLRDSMRKYE--------SELTKLDVLA 500
+PP Q R Y GY KG + + + +R SM K S L+V+
Sbjct: 435 DPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVT 494
Query: 501 WSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 559
S + L++ L++LLS GI +E F + + +I + A A +
Sbjct: 495 TSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKRAALNAALNYGEMD 554
Query: 560 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 619
+ N + +L+ G D EP L L ++ +L+ ++ + +MG +D T L
Sbjct: 555 DQNAAQMILV-GIPLD-EPHLKNYLSILLKTEKNDLKAG-KLPVTESYYLMGTVDPTGAL 611
Query: 620 NYGQVFVQISGAGYRQLHGE 639
+V V I +G Q+ GE
Sbjct: 612 KEDEVCV-ILESG--QISGE 628
Score = 62 (26.9 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 30/90 (33%), Positives = 40/90 (44%)
Query: 368 YGLTAAEIREWMGNFREIRN---VAKYAARLGQSFSSSKETLSVHM-----DEIEII--- 416
Y LT I E +F + +A Y AR S +K TL V M D+I+ I
Sbjct: 323 YILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTK-TLEVDMTGITFDQIDDIHCH 381
Query: 417 -PDVKIEIGKTKY--VFSDGIGKVSAEFAR 443
D K + K K + SDG G +S + AR
Sbjct: 382 DQDGKDVLDKNKKPCIHSDGTGYISEDLAR 411
Score = 55 (24.4 bits), Expect = 3.8e-06, Sum P(4) = 3.8e-06
Identities = 28/134 (20%), Positives = 53/134 (39%)
Query: 226 YEPSRWLTDQY-RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 284
YE + W D+ R Y + + + D G + ++ V P+ Y + +L
Sbjct: 174 YEAAVW--DRLGRHYCPQKDRRM---LQWDSGKTHYYQCNVAPNGSYTFKVLSALQGPLL 228
Query: 285 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDXXXXXXXXXXLSTLRNGILIGDR 344
H + L D+++ + D+ SS+T ++ +NGI+IG R
Sbjct: 229 EHTGTHLHKVLG----DDNVLTVKFADVQK--SSSTYSIDHYFTYKGIA--KNGIMIGLR 280
Query: 345 KFEFLAFSSSQLRE 358
+++F F E
Sbjct: 281 RYQFFVFKDGGKEE 294
>TAIR|locus:2052040 [details] [associations]
symbol:AT2G19910 species:3702 "Arabidopsis thaliana"
[GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016441 "posttranscriptional gene silencing" evidence=ISS]
InterPro:IPR007855 Pfam:PF05183 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 GO:GO:0031047 EMBL:AC005169
GO:GO:0003968 KO:K11699 PANTHER:PTHR23079 IPI:IPI00534018
PIR:F84582 RefSeq:NP_179581.2 UniGene:At.52837 PaxDb:O82190
PRIDE:O82190 EnsemblPlants:AT2G19910.1 GeneID:816510
KEGG:ath:AT2G19910 TAIR:At2g19910 eggNOG:NOG279775
InParanoid:O82190 OMA:IFYSERA PhylomeDB:O82190
Genevestigator:O82190 Uniprot:O82190
Length = 992
Score = 94 (38.1 bits), Expect = 8.0e-06, Sum P(4) = 8.0e-06
Identities = 24/48 (50%), Positives = 28/48 (58%)
Query: 654 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMR 697
+ G V+V +NP LH GD+ VLKA V AL V V FPQKG R
Sbjct: 636 ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQKGPR 683
Score = 89 (36.4 bits), Expect = 8.0e-06, Sum P(4) = 8.0e-06
Identities = 59/229 (25%), Positives = 96/229 (41%)
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR--YGGY--KGVVAADPT- 475
+ I K K + S+ I + F + CG PP Q R Y GY KG +
Sbjct: 419 VNIFKGKSMRSNNIQSKNLNFEGQ--GPCG--QEPPLLIQFRIFYNGYAVKGTFLTNKKL 474
Query: 476 SSKKLSLRDSMRK-YE-------SELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEI 526
+ + +R SM K YE S L+V+ S + L+R L++LLS G+ ++
Sbjct: 475 PPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDF 534
Query: 527 FEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQT 586
F R + + I A +A ++ G++ ++++ G D EP+L L
Sbjct: 535 FLNILRNTLEESKTIFYSERAAFKAA--INYGDD-QYTADMILVGIPLD-EPYLKDRLSY 590
Query: 587 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV-----QISG 630
++ L+ R I +MG +D T L ++ V QISG
Sbjct: 591 LLKTERNALKAG-RFPIDESYYIMGTVDPTGELKENEICVILHSGQISG 638
Score = 48 (22.0 bits), Expect = 8.0e-06, Sum P(4) = 8.0e-06
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 336 RNGILIGDRKFEFLAFSSSQLRE 358
+NGI++G R++ F F E
Sbjct: 276 KNGIMVGLRRYRFFVFKDGGKEE 298
Score = 48 (22.0 bits), Expect = 8.0e-06, Sum P(4) = 8.0e-06
Identities = 27/103 (26%), Positives = 45/103 (43%)
Query: 352 SSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMD 411
S++ + + ++FA G + E R + + ++ Y +R S +K TL V M
Sbjct: 317 STASIDMQNPYIFA---GKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTK-TLEVDMT 372
Query: 412 EI--EIIPDV-------KIEIGKT--KYVFSDGIGKVSAEFAR 443
I E I D+ K + K + SDG G +S + AR
Sbjct: 373 GITFEQIDDIHCHDQDDKDVLDKNGKPCIHSDGTGYISEDLAR 415
Score = 41 (19.5 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 370 LTAAEIREWMGNFREIRNVAKYAA---RLGQSFSSSKE 404
++ +IR+W +++ V+ AA RLGQ + S KE
Sbjct: 168 ISGDQIRKW----KDLPMVSYEAAVWNRLGQRYCSPKE 201
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.139 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 724 701 0.00082 121 3 11 22 0.36 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 630 (67 KB)
Total size of DFA: 380 KB (2186 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 56.32u 0.14s 56.46t Elapsed: 00:00:03
Total cpu time: 56.33u 0.14s 56.47t Elapsed: 00:00:03
Start: Fri May 10 13:03:22 2013 End: Fri May 10 13:03:25 2013