BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004909
(724 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224099571|ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1133
Score = 1056 bits (2730), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/696 (71%), Positives = 591/696 (84%), Gaps = 2/696 (0%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+KF+ +W G NV+VNFG GMRK++F LSH EY+L L +ENIW+IELH PR Q KYLL
Sbjct: 111 EKFSAVWSGNNVSVNFGLGMRKLHFFLSHNLAEYKLNLLFENIWQIELHRPRGQTVKYLL 170
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQL GAPRI+++ + S ++E P+ N+F++VPD+QWVRTTDFTPS IG S+ LC+ELP
Sbjct: 171 IQLYGAPRIYERDVPSSSNVFEDPLLNYFRDVPDEQWVRTTDFTPSCGIGHSSSLCLELP 230
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
L+LP+F ENF YYKE+E FVLE+G +SR+ DLVPIVGP G+ LPY ILF++NLLV
Sbjct: 231 NHLQLPNFNENFFYYKENEGTFVLESGLTFSRNPDLVPIVGPSSGVNLPYNILFRVNLLV 290
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
QNGC+AG +LD FYRLVDP R PV CIE+AL+KLYHLKECCYEPS+W +QY+KY+T
Sbjct: 291 QNGCLAGSMLDDIFYRLVDPNRMPVR--CIEYALEKLYHLKECCYEPSKWFNEQYKKYLT 348
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
S + P SP +SLD GLVYV++VQ+TP +V+FCGPE+NVSNRVLR +R DIDNFLR+SF+D
Sbjct: 349 SGNPPRSPVLSLDAGLVYVYKVQITPCKVFFCGPEVNVSNRVLRQYREDIDNFLRVSFVD 408
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
E+L+KIHSTD+SPR SS ++ RT IY RILSTL+NGI+IGD+KFEFLAFSSSQLRE+S
Sbjct: 409 EELEKIHSTDVSPRTSSRNELRRTAIYNRILSTLQNGIVIGDKKFEFLAFSSSQLRENSC 468
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
WMFASR GLTAA+IR WMG+F +IRNVA+YAARLGQSF SS ETLSV EIEIIPD+++
Sbjct: 469 WMFASRLGLTAADIRAWMGSFHKIRNVARYAARLGQSFGSSTETLSVSSHEIEIIPDIEV 528
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 481
G T+Y+FSDGIGK+SAEFARKVA KCG K PSAFQIRY GYKGVVA DPTSSKKLS
Sbjct: 529 SRGGTRYLFSDGIGKISAEFARKVAIKCGCKGFTPSAFQIRYAGYKGVVAVDPTSSKKLS 588
Query: 482 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 541
LR SM KYESE TKLDVLA SKYQPCFLNRQLI+LLSTLG+ D FE+KQREAV QLDA+
Sbjct: 589 LRRSMFKYESENTKLDVLAHSKYQPCFLNRQLITLLSTLGVPDHHFERKQREAVDQLDAM 648
Query: 542 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
LTDPL+AQEALELMSPGENTNILKE+L+CGY+PDAEPFLSMMLQTFRASKLLELRTKTRI
Sbjct: 649 LTDPLRAQEALELMSPGENTNILKEMLLCGYQPDAEPFLSMMLQTFRASKLLELRTKTRI 708
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
FIPNGRSMMGCLDETRTL +GQVFV+ SG+ +R L+ S +FS Q ++++G VVVA
Sbjct: 709 FIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQCYLIKGSVVVA 768
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
KNPCLHPGD+R+LKAV+VPALHHMVDCVVFPQKG R
Sbjct: 769 KNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPR 804
>gi|225424397|ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
Length = 1121
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/697 (71%), Positives = 583/697 (83%), Gaps = 14/697 (2%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
++F VLW+ +NV+V FG G+RK F LSH EEY+LEL YENIW+I+L PR Q+TK+LL
Sbjct: 111 ERFCVLWKAINVSVKFGSGLRKFYFFLSHGSEEYKLELSYENIWQIQLQHPRGQITKFLL 170
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQLLGAP+I++K + P L Y +FKE PDDQWVR DFTPS FIGQS LC+ELP
Sbjct: 171 IQLLGAPQIYEKDV--PVLSY------YFKEAPDDQWVREIDFTPSCFIGQSFALCLELP 222
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
Y +LP+F+ENFAYYKE++ +F+LE+GS+YS +L LVPI+GPP G +LP++ILFKIN LV
Sbjct: 223 YGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILGPPQGSSLPFQILFKINTLV 282
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
QNGC++GP LD++F+RLVDP R P+S IEHAL+KLYHLKECCYEP RWL++QYR Y+
Sbjct: 283 QNGCLSGPTLDTSFFRLVDPERFPISF--IEHALEKLYHLKECCYEPVRWLSEQYRTYV- 339
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
+ SPAISLD GLVYV RVQ+TP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 340 KKPVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLD 399
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
E+L+KIHST +SPR S + RT +Y RILS L+NGI+IGD+KF+FLAFSSSQLR++SA
Sbjct: 400 ENLEKIHSTVISPRMSK--EGRRTGVYRRILSILQNGIVIGDKKFDFLAFSSSQLRDNSA 457
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
WMFASR GLTAAEIR WMG+F +IRNVAKYAARLGQSFSSSKETL V DEIE IPD++I
Sbjct: 458 WMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEI 517
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 481
G+T YVFSDGIGK+S + A +VA KCG K + PSAFQIRYGGYKGVVA DPTSS+KLS
Sbjct: 518 HKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLS 577
Query: 482 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 541
LR SM KYES+ T LDVLAWSKYQP FLNRQLI+LLSTLG+ D +FEKKQR AV QLD I
Sbjct: 578 LRKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTI 637
Query: 542 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
L DP+ AQEALELMSPGENTN+LKE+L+CGYKPDAEPFLSMMLQTFRA+KLLELRTKTRI
Sbjct: 638 LKDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRI 697
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 660
F+PNGRSMMGCLDETRTL YG+VFVQISG G RQ G+S +F S S FI++G +VV
Sbjct: 698 FVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVV 757
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
AKNPCLHPGDVRVL AVNVP LHHMVDCVVFPQKG R
Sbjct: 758 AKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKR 794
>gi|90823307|gb|ABE01124.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/696 (71%), Positives = 577/696 (82%), Gaps = 23/696 (3%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+KF VLW+ NVT+NFG GMRK+ FLLS+ +Y+LEL YENIW+IEL CP Q +K+LL
Sbjct: 110 EKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLL 169
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQL GAPRI++K + + + +++ P+ N+FK++PDDQWVRTTDFT SN IGQS+ LC+ELP
Sbjct: 170 IQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLCLELP 229
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
+ L+LP+F+ENFAYYKE+E R VLE+GS+YS +L LVPIV P I LP+EILFK+NLLV
Sbjct: 230 HNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLV 289
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
QNGC+ GP LD FYRLVDP R + I+HAL+KLY+L+ECCYEPSRWL ++Y+ +
Sbjct: 290 QNGCIPGPALDDTFYRLVDPCR--MHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSR 347
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
SR SP ISLD+GLVYV RVQ+TPSRVYFCGPEINVSNRVLR F DIDNFLRISF+D
Sbjct: 348 SRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVD 407
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
E+L+KIHST++ RG RT IY RILSTLRNGI+IG+++FEFLAFSSSQLRE+SA
Sbjct: 408 EELEKIHSTNVQARGR------RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSA 461
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
WMFASR GLTAA+IR WMGNF +IRNVAKYAARLGQSFSSS ETLSV DEI +IPD++I
Sbjct: 462 WMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEI 521
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 481
KYVF DGIGK+SAEFA+KVA+KC LK PSAFQIR GG+KGVVA DPTSS KLS
Sbjct: 522 MKDGIKYVFPDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLS 581
Query: 482 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 541
LR SM KYESE TKLDVLAWSKYQPCFLNRQLI+LLSTLG+ D FEKKQRE V QL+A+
Sbjct: 582 LRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDYAFEKKQREVVDQLNAL 641
Query: 542 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
LTDPL+AQEALELMSPGENTNILKE+L+CGYKPDAEPFLSMML+TFRASKLLELRTK RI
Sbjct: 642 LTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARI 701
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
F+ GRSMMGCLDETRTLNYGQVFVQ SG SRS +RFIVQG V+VA
Sbjct: 702 FVQKGRSMMGCLDETRTLNYGQVFVQFSG---------------SRSERRFIVQGKVIVA 746
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
KNPCLHPGDVRVL+AVNVP LHHMVDCVVFPQKG R
Sbjct: 747 KNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTR 782
>gi|146762448|gb|ABQ45352.1| RNA-dependent RNA polymerase [Gossypium hirsutum]
Length = 1110
Score = 1021 bits (2640), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/696 (71%), Positives = 577/696 (82%), Gaps = 23/696 (3%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+KF VLW+ NVT+NFG GMRK+ FLLS+ +Y+LEL YENIW+IEL CP Q +K+LL
Sbjct: 110 EKFYVLWKADNVTLNFGTGMRKLEFLLSYCSSKYKLELFYENIWQIELRCPHSQTSKHLL 169
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQL GAPRI++K + + + +++ P+ N+FK++PDDQWVRTTDFT SN IGQS+ L +ELP
Sbjct: 170 IQLFGAPRIYEKEVPASECVFDDPLLNYFKDMPDDQWVRTTDFTRSNCIGQSSVLWLELP 229
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
+ L+LP+F+ENFAYYKE+E R VLE+GS+YS +L LVPIV P I LP+EILFK+NLLV
Sbjct: 230 HNLQLPNFRENFAYYKENEGRLVLESGSSYSCNLSLVPIVCPSRVIDLPFEILFKVNLLV 289
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
QNGC+ GP LD FYRLVDP R + I+HAL+KLY+L+ECCYEPSRWL ++Y+ +
Sbjct: 290 QNGCIPGPALDDTFYRLVDPCR--MHKVYIDHALEKLYYLRECCYEPSRWLFEEYKNFSR 347
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
SR SP ISLD+GLVYV RVQ+TPSRVYFCGPEINVSNRVLR F DIDNFLRISF+D
Sbjct: 348 SRKYQGSPTISLDEGLVYVRRVQITPSRVYFCGPEINVSNRVLRQFHNDIDNFLRISFVD 407
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
E+L+KIHST++ RG RT IY RILSTLRNGI+IG+++FEFLAFSSSQLRE+SA
Sbjct: 408 EELEKIHSTNVQARGR------RTGIYKRILSTLRNGIVIGNKRFEFLAFSSSQLRENSA 461
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
WMFASR GLTAA+IR WMGNF +IRNVAKYAARLGQSFSSS ETLSV DEI +IPD++I
Sbjct: 462 WMFASRKGLTAADIRSWMGNFSKIRNVAKYAARLGQSFSSSTETLSVSKDEINLIPDIEI 521
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 481
KYVFSDGIGK+SAEFA+KVA+KC LK PSAFQIR GG+KGVVA DPTSS KLS
Sbjct: 522 MKDGIKYVFSDGIGKISAEFAKKVAAKCRLKGCTPSAFQIRIGGFKGVVAIDPTSSWKLS 581
Query: 482 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 541
LR SM KYESE TKLDVLAWSKYQPCFLNRQLI+LLSTLG+ D FEKKQRE V QL+A+
Sbjct: 582 LRKSMEKYESENTKLDVLAWSKYQPCFLNRQLITLLSTLGVPDRAFEKKQREVVDQLNAL 641
Query: 542 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
LTDPL+AQEALELMSPGENTNILKE+L+CGYKPDAEPFLSMML+TFRASKLLELRTK RI
Sbjct: 642 LTDPLEAQEALELMSPGENTNILKEMLLCGYKPDAEPFLSMMLETFRASKLLELRTKARI 701
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
F+ GRSMMGCLDETRTLNYGQVFVQ SG SRS +RFIVQG V+VA
Sbjct: 702 FVQKGRSMMGCLDETRTLNYGQVFVQFSG---------------SRSERRFIVQGKVIVA 746
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
KNPCLHPGDVRVL+AVNVP LHHMVDCVVFPQKG R
Sbjct: 747 KNPCLHPGDVRVLRAVNVPDLHHMVDCVVFPQKGTR 782
>gi|225424395|ref|XP_002281315.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Vitis vinifera]
Length = 1109
Score = 1000 bits (2586), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/697 (70%), Positives = 579/697 (83%), Gaps = 15/697 (2%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
++F VLW+ +NV+V FGFG+RK F LSH EEY+LEL ENIW+I+L PR Q TK+LL
Sbjct: 110 ERFCVLWKAINVSVKFGFGLRKFYFFLSHGSEEYKLELSCENIWQIQLREPRGQNTKFLL 169
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQLL AP+I++K + + ++FKE PDDQWVR DFTPS IGQS+ LC+ELP
Sbjct: 170 IQLLDAPQIYEKDVSA---------LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELP 220
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
+ +LP+F ENFA YKE++ +F+LE+G+++S +L LVPIVGPP G LP++ILFKIN LV
Sbjct: 221 HGSQLPNFCENFARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLV 280
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
QNGC++GP LD+NF+R VDP R ++IS IEHAL+KLY+L+ECCYEP RWL +QYR Y+
Sbjct: 281 QNGCLSGPTLDTNFFRWVDPQR--INISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI- 337
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
S+ SPAISLD GLVYV RVQ+TP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+D
Sbjct: 338 SKQVAGSPAISLDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLD 397
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
E+ +KIHST +SPR S+ + RT +Y RILS L+NGI+IGD+KF+FLA SSSQLR++SA
Sbjct: 398 ENSEKIHSTVISPRMSN--EGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSA 455
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
WMFASR GLTAA+IR MG+F +IRNVAKYAARLGQSFSSSKETL V EIEIIPD++
Sbjct: 456 WMFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIET 515
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 481
T YVFSDGIGK+SAE A +VA KCG K++ PSAFQIRYGGYKGVVA DPTSS+KLS
Sbjct: 516 HRDGTTYVFSDGIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLS 575
Query: 482 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 541
LR SM KYESE T LDVL+WSKY+PCFLNRQLI+LLSTLG+ D +FEKKQREAV QLD I
Sbjct: 576 LRKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTI 635
Query: 542 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
L DPL+AQEALELMSPGENTNILKE+L+CGYKPDAEPFLSMMLQTFRA+KLLELRTKTRI
Sbjct: 636 LKDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRI 695
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVV 660
F+PNGRSMMGCLDETRTL YG+VFVQISG G RQ G+S +F S S FI++G VVV
Sbjct: 696 FVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVV 755
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
AKNPCLHPGDVR+L AV+VPALHHMVDCVVFPQKGMR
Sbjct: 756 AKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMR 792
>gi|356499585|ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1125
Score = 962 bits (2488), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/697 (67%), Positives = 565/697 (81%), Gaps = 12/697 (1%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
+F+VLW+ +V VNFG GMRK++FL SH +Y+LEL YENIW+IELH PR + T+YLLI
Sbjct: 115 RFSVLWKKQDVIVNFGSGMRKMHFLFSHNNVQYKLELSYENIWKIELHRPRNETTRYLLI 174
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
QLLGAPR+F+ + + +++ P+FNFFK+ PD+QW+R DFTP + IGQS+ +C+ELP
Sbjct: 175 QLLGAPRVFENDVPTSTNIFDDPLFNFFKDAPDEQWIRAIDFTPESRIGQSSAICLELPN 234
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQ 182
+LP+F+ENFAYY+ESE ++ L+TG +S++ LVPIV PP G+ + Y+ILFK+N LVQ
Sbjct: 235 GRQLPNFRENFAYYEESERQYTLQTGVPFSQNWGLVPIVAPPLGVKISYDILFKVNSLVQ 294
Query: 183 NGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS 242
+ C+AGP LD +FYRLVDP R P IE+AL+K+Y+ KE CYEP++WLTDQY+ Y+ S
Sbjct: 295 HACLAGPALDGDFYRLVDPRRMPREF--IEYALEKIYYSKEFCYEPTKWLTDQYKTYLES 352
Query: 243 RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 302
++ P SPAISLD GLVYV RVQ+TP +VYFCGPE+NVSNRVLRHFR IDNFLR+SF+DE
Sbjct: 353 KNHPRSPAISLDTGLVYVRRVQITPCKVYFCGPEMNVSNRVLRHFREHIDNFLRVSFVDE 412
Query: 303 DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 362
+LDK+ STDLS R + +T IYTRILS L+NGI++GD+KFEFLAFSSSQLRE+S W
Sbjct: 413 ELDKLFSTDLSSRSQNK----KTEIYTRILSILKNGIVVGDKKFEFLAFSSSQLRENSLW 468
Query: 363 MFA-SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK- 420
MFA + G TAA IR+WMGNF +IRNVAKYAARLGQSF SS ETLSVH DE+EIIPDVK
Sbjct: 469 MFAPTETGCTAAYIRKWMGNFSQIRNVAKYAARLGQSFGSSTETLSVHRDEVEIIPDVKK 528
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ +YVFSDGIGK+S EFA+KVA KCG D PSAFQIRYGGYKGVVA DP S KL
Sbjct: 529 LTYDGNEYVFSDGIGKISLEFAQKVAKKCGY-DCTPSAFQIRYGGYKGVVAVDPKSCYKL 587
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SMRKY+S+ TKLDVLA SK+QPC+LNRQLISLLSTLGI D++FEKKQRE V QL+
Sbjct: 588 SLRKSMRKYDSDNTKLDVLARSKFQPCYLNRQLISLLSTLGIKDDVFEKKQRETVNQLNT 647
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
ILTD LKAQE L+LMS GE TN+LKE+LICGYKP+ EPFLSMMLQTFRASKLLELR K+R
Sbjct: 648 ILTDSLKAQEVLDLMSAGEITNVLKEMLICGYKPNEEPFLSMMLQTFRASKLLELRLKSR 707
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
IFIP GR+MMGCLDETRTL YGQVFVQ S +L S F S + ++V+G VVV
Sbjct: 708 IFIPKGRAMMGCLDETRTLEYGQVFVQFSN---NRLQNLSDDFFSYDLPKNYMVKGKVVV 764
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
AKNPCLHPGDVRVL+AV+VP L+HMVDCVVFPQKG R
Sbjct: 765 AKNPCLHPGDVRVLQAVDVPDLYHMVDCVVFPQKGPR 801
>gi|4138282|emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
Length = 1116
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/699 (66%), Positives = 563/699 (80%), Gaps = 17/699 (2%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
KKFAVL +V++ FG G++KI F LSH +Y+L+L YENIW++ LH P Q ++LL
Sbjct: 109 KKFAVL-GSKDVSIKFGIGLKKIYFFLSHASADYKLQLSYENIWQVVLHRPYGQNAQFLL 167
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
+QL GAPRI+++ E ++FFKE PDDQWVRTTDFTPS +IG S+ LC+E
Sbjct: 168 LQLFGAPRIYKR--------LEDSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFR 218
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGS--AYSRSLDLVPIVGPPDGIALPYEILFKINL 179
++LP+F E+F YYKES ++F+L+TG ++S+ L LVPIV P+GI LPY+ILFKI+
Sbjct: 219 NGVQLPNFSESFFYYKESMNQFILQTGFTFSFSQKLALVPIVHLPEGIELPYKILFKISS 278
Query: 180 LVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKY 239
L+Q+GC G L+ NF++LVDP R +I+CIEHAL+KLY+LKECCY+P RWLT+QY +Y
Sbjct: 279 LIQHGCFPGLALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCYDPVRWLTEQYDEY 336
Query: 240 MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
+ R P SP I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DI+NFLR+SF
Sbjct: 337 LKGRQLPKSPPITLDDGLVYVRRVVVTPCKVYFCGPEVNVSNRVLRNYSEDINNFLRVSF 396
Query: 300 IDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRES 359
+DE+ +KIHSTDL PR S+ TRT IY RILSTLRNG +IGD++FEFLAFSSSQLR++
Sbjct: 397 VDEEWEKIHSTDLLPRASTGNG-TRTDIYERILSTLRNGFIIGDKRFEFLAFSSSQLRDN 455
Query: 360 SAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 419
S WMFASR GLTA +IR WMG+FR+IRNVAKYAARLGQSF SS+ETLSV E+E+IPDV
Sbjct: 456 SVWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDV 515
Query: 420 KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 479
+ T Y+FSDGIGK+SA+FA +V KCGL+ P S+FQIRYGGYKGVVA DP SS K
Sbjct: 516 ACSLHGTNYIFSDGIGKISADFAHRVTIKCGLQYTP-SSFQIRYGGYKGVVAVDPYSSMK 574
Query: 480 LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
LSLR SM KYES KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ EAV QLD
Sbjct: 575 LSLRKSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVIDDVLEQKQNEAVDQLD 634
Query: 540 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
AIL D LKAQEALELMSPGENTNILKE+L CGY PDAEPFLSMMLQTFRASKLL+LRT+T
Sbjct: 635 AILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRT 694
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLV 658
RIFIPNGR+MMGCLDE+RTL YGQVFVQ SGAG RQ ES F+ S S FI++G V
Sbjct: 695 RIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDFILKGNV 754
Query: 659 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VVAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG R
Sbjct: 755 VVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKR 793
>gi|157152684|gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
Length = 1117
Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/700 (66%), Positives = 563/700 (80%), Gaps = 18/700 (2%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
KKFAVL V V++ FG G++KI F LS+ +Y+L+L YENIW++ LH P Q ++LL
Sbjct: 109 KKFAVLGSKV-VSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHRPYGQKAQFLL 167
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
+QL GAPRI+++ E ++FFKE PDDQWVRTTDFTPS +IG S+ LC+E
Sbjct: 168 LQLSGAPRIYKR--------LEDSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFH 218
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYS---RSLDLVPIVGPPDGIALPYEILFKIN 178
+ LP+F E+F YYKES ++ +L+TG +S + L LVPIV P+GI LPY+ILFKI+
Sbjct: 219 NGVRLPNFSESFFYYKESANQVILQTGFTFSFSQKKLALVPIVHLPEGIELPYKILFKIS 278
Query: 179 LLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRK 238
L+Q+GC G L+ NF++LVDP R +I+CIEHAL+KLY+LKECCY+P RWLT+QY +
Sbjct: 279 SLIQHGCFPGLALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCYDPVRWLTEQYDE 336
Query: 239 YMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRIS 298
Y+ R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+S
Sbjct: 337 YLKRRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVS 396
Query: 299 FIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRE 358
F+DE+ +KIHSTDL PR S+ + RT IY RILSTLRNG +IGD+KFEFLAFSSSQLR+
Sbjct: 397 FVDEEWEKIHSTDLLPRASTGNGV-RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRD 455
Query: 359 SSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPD 418
+S WMFASR GLTA +IR WMG F++IRNVAKYAARLGQSF SS+ETLSV E+E+IPD
Sbjct: 456 NSVWMFASRPGLTANDIRTWMGGFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPD 515
Query: 419 VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK 478
V + T Y+FSDGIGK+SA+FAR+VA KCGL+ PS FQIRYGGYKGVVA DP SS
Sbjct: 516 VVCSLHGTNYIFSDGIGKISADFARRVAVKCGLQ-YTPSCFQIRYGGYKGVVAVDPYSSM 574
Query: 479 KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 538
KLSLR+SM KYES KLDVL WSKYQPC+LNRQL++LLSTLG+ D++FE+KQ EAV QL
Sbjct: 575 KLSLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQL 634
Query: 539 DAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTK 598
DAIL D LKAQEALELMSPGENTNILKE+L CGY PDAEPFLSMMLQTFRASKLL+LRT+
Sbjct: 635 DAILHDTLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTR 694
Query: 599 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGL 657
+RIFIPNGR+MMGCLDE+RTL YGQVFVQ +G G RQ + ES F+ S S FI++G
Sbjct: 695 SRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDFILEGN 754
Query: 658 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VVVAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG R
Sbjct: 755 VVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKR 794
>gi|15223906|ref|NP_172932.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
gi|75335341|sp|Q9LQV2.1|RDR1_ARATH RecName: Full=RNA-dependent RNA polymerase 1; Short=AtRDRP1;
AltName: Full=RNA-directed RNA polymerase 1
gi|8778232|gb|AAF79241.1|AC006917_26 F10B6.19 [Arabidopsis thaliana]
gi|110737376|dbj|BAF00633.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332191105|gb|AEE29226.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 934 bits (2415), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/698 (65%), Positives = 558/698 (79%), Gaps = 23/698 (3%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
KKF LW +V V+FG GMRK++F S ++YRLEL YENIW+I+LH P+ + +K+L+
Sbjct: 111 KKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLV 170
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQ++GAP+IF+K + +LL+ + +F+ + D+QW+RTTDFT S+ IGQST C+ELP
Sbjct: 171 IQVIGAPKIFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELP 228
Query: 122 YRLELPDFKENFAYYKESE-DRFVLETGSAYSRSLD-LVPIVGPPDGIALPYEILFKINL 179
L +PDF+ENFA Y E F++E+GS+YS + + LVP+V PP G +LP+EILFK+N
Sbjct: 229 VHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNT 288
Query: 180 LVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKY 239
LVQN C++GP LD +FYRL++ + ++ I+H L+KL+HL ECCYEP+ WL D+Y+K+
Sbjct: 289 LVQNACLSGPALDLDFYRLLNQKKYDRAL--IDHCLEKLFHLGECCYEPAHWLRDEYKKW 346
Query: 240 MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
++ P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFLR+SF
Sbjct: 347 ISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSF 406
Query: 300 IDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRES 359
+DEDL+K+ S DLSPR S+ RT++Y RI S LR+GI+IGD+KFEFLAFSSSQLRE+
Sbjct: 407 VDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLREN 463
Query: 360 SAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 419
SAWMFA +TAA IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+IPDV
Sbjct: 464 SAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDV 523
Query: 420 KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 479
+I T+YVFSDGIGK+SAEFARKVA KCGL + PSAFQIRYGGYKGVVA DP SSKK
Sbjct: 524 EIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKK 583
Query: 480 LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
LSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLG+ D +FEKKQRE V +LD
Sbjct: 584 LSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLD 643
Query: 540 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
AILT PL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLELRTKT
Sbjct: 644 AILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKT 703
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
RIFI GRSMMGCLDETRTL YGQV VQ S R +RFI+ G VV
Sbjct: 704 RIFISGGRSMMGCLDETRTLEYGQVVVQYS--------------DPMRPGRRFIITGPVV 749
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGDVRVL+AVNVPAL+HMVDCVVFPQKG+R
Sbjct: 750 VAKNPCLHPGDVRVLQAVNVPALNHMVDCVVFPQKGLR 787
>gi|24935275|gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
Length = 1107
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/698 (65%), Positives = 557/698 (79%), Gaps = 23/698 (3%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
KKF LW +V V+FG GMRK++F S ++YRLEL YENIW+I+LH P+ + +K+L+
Sbjct: 111 KKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLV 170
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQ++GAP+IF+K + +LL+ + +F+ + D+QW+RTTDFT S+ IGQST C+ELP
Sbjct: 171 IQVIGAPKIFEKEDQPINLLFG--IMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELP 228
Query: 122 YRLELPDFKENFAYYKESE-DRFVLETGSAYSRSLD-LVPIVGPPDGIALPYEILFKINL 179
L +PDF+ENFA Y E F++E+GS+YS + + LVP+V PP G +LP+EILFK+N
Sbjct: 229 VHLNVPDFRENFANYAEHRASSFLIESGSSYSSNANTLVPVVDPPPGFSLPFEILFKLNT 288
Query: 180 LVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKY 239
LVQN C++GP LD +FYRL++ + ++ I+H L+KL+HL ECCYEP+ WL D+Y+K+
Sbjct: 289 LVQNACLSGPALDLDFYRLLNQKKYDRAL--IDHCLEKLFHLGECCYEPAHWLRDEYKKW 346
Query: 240 MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
++ P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFLR+SF
Sbjct: 347 ISKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSF 406
Query: 300 IDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRES 359
+DEDL+K+ S DLSPR S+ RT++Y RI S LR+GI+IGD+KFEFLAFSSSQLRE+
Sbjct: 407 VDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLREN 463
Query: 360 SAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 419
SAWMFA +TAA IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+IPDV
Sbjct: 464 SAWMFAPIDRITAAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDV 523
Query: 420 KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 479
+I T+YVFSDGIGK+SAEFARKVA KCGL + PSAFQIRYGGYKGVVA DP SSKK
Sbjct: 524 EIISLGTRYVFSDGIGKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKK 583
Query: 480 LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
LSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLG+ D +FEKKQRE V +LD
Sbjct: 584 LSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLD 643
Query: 540 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
AILT PL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLELRTKT
Sbjct: 644 AILTHPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKT 703
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
RIFI GRSMMGCLDETRTL YGQV VQ S R +RFI+ G VV
Sbjct: 704 RIFISGGRSMMGCLDETRTLEYGQVVVQYS--------------DPMRPGRRFIITGPVV 749
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLH GDVRVL+AVNVPAL+HMVDCVVFPQKG+R
Sbjct: 750 VAKNPCLHSGDVRVLQAVNVPALNHMVDCVVFPQKGLR 787
>gi|142942513|gb|ABO93004.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 841
Score = 931 bits (2406), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 459/698 (65%), Positives = 559/698 (80%), Gaps = 19/698 (2%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
KFAVL V++ FG G++K F LS +Y+L+L YENIW++ LH P Q ++LLI
Sbjct: 110 KFAVL-GSTEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLI 168
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
QL GAPRI+++ E+ ++FFKE PDDQWVRTTDF PS +IG S+ LC++
Sbjct: 169 QLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRR 219
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLL 180
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ L
Sbjct: 220 GVHLPNFQESFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSL 279
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQ+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 280 VQHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYL 337
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+
Sbjct: 338 KGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 397
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ +K++STDL P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 398 DEEWEKLYSTDLLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 456
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK
Sbjct: 457 VWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVK 516
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KL
Sbjct: 517 VH--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKL 573
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDA
Sbjct: 574 SLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDA 633
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
IL D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRT++R
Sbjct: 634 ILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSR 693
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVV 659
IFIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VV
Sbjct: 694 IFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVV 753
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG R
Sbjct: 754 VAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKR 791
>gi|142942402|gb|ABO92977.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1115
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/698 (65%), Positives = 559/698 (80%), Gaps = 19/698 (2%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
KFAVL V++ FG G++K F LS +Y+L+L YENIW++ LH P Q ++LLI
Sbjct: 110 KFAVLG-STEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLI 168
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
QL GAPRI+++ E+ ++FFKE PDDQWVRTTDFTPS +IG S+ LC++
Sbjct: 169 QLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLQFRR 219
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLL 180
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ L
Sbjct: 220 GVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSL 279
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQ+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 280 VQHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYL 337
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+
Sbjct: 338 KGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 397
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 398 DEEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 456
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLT +IR WMG+F +I+NVAKYAARLGQSF SS+ETLSV EIE+IPDVK
Sbjct: 457 VWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVK 516
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ T YVFSDGIGK+SA+FAR+VASKCGL+ PSAFQIRYGGYKGVVA DP SS KL
Sbjct: 517 VH--GTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKL 573
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDA
Sbjct: 574 SLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDA 633
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
IL D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRT++R
Sbjct: 634 ILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSR 693
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVV 659
IFIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VV
Sbjct: 694 IFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVV 753
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG R
Sbjct: 754 VAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKR 791
>gi|142942515|gb|ABO93006.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 1065
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/698 (65%), Positives = 560/698 (80%), Gaps = 19/698 (2%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
KFAVL V++ FG G++KI F LS +Y+L+L YENIW++ LH P Q ++LLI
Sbjct: 109 KFAVL-GSTEVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLI 167
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
QL GAPRI+++ E+ ++FFKE PDDQWVRTTDF PS +IG S+ LC++
Sbjct: 168 QLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRR 218
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLL 180
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ L
Sbjct: 219 GVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSL 278
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQ+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 279 VQHGCIPGPSLNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYL 336
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+
Sbjct: 337 KGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 396
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ +K++ST+L P+ S+ I RT IY RILST++ G +IGD+KFEFLAFSSSQLR++S
Sbjct: 397 DEEWEKLYSTELLPKASTGNGI-RTNIYERILSTMQKGFVIGDKKFEFLAFSSSQLRDNS 455
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK
Sbjct: 456 VWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVK 515
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ T YVFSDGIGK+SA+FAR+VASKCGL+ PSAFQIRYGGYKGVVA DP SS KL
Sbjct: 516 VH--GTSYVFSDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKL 572
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM KYES+ KLDVL WSKYQPC+LNRQLI+LLSTLG+ D+I E+KQ+EAV QLDA
Sbjct: 573 SLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLITLLSTLGVKDDILEQKQKEAVDQLDA 632
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
IL D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+R
Sbjct: 633 ILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSR 692
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVV 659
IFIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VV
Sbjct: 693 IFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVV 752
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG R
Sbjct: 753 VAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKR 790
>gi|449457381|ref|XP_004146427.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491623|ref|XP_004158955.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989901|gb|ADU77016.1| RNA-dependent RNA polymerase 1b [Cucumis sativus]
Length = 1115
Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 442/697 (63%), Positives = 552/697 (79%), Gaps = 7/697 (1%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+ F+VLW NV+V+FGF +RK+ F +S+ +Y L L YENIW++ELH P Q YLL
Sbjct: 111 ESFSVLWTESNVSVDFGFELRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLL 170
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQL GAPRI+++ RS L+ E P NF E+ D QW R TDFTPS IGQS LC+E+P
Sbjct: 171 IQLFGAPRIYERDARSFGLITEDPFLNFSTEI-DTQWFRATDFTPSCSIGQSAALCLEIP 229
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
Y +LP+F + FAY+KE + +F L +GS YS +++LVP+V PP I LPY ILFKINLLV
Sbjct: 230 YGRQLPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLV 289
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
Q GC+ GP LD +FY++VD + + I+HAL KL HLKECCY PS+WL ++YRKY
Sbjct: 290 QQGCLPGPALDISFYQMVD--SQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFK 347
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
++ P P ++L++GLVYVHRVQVTP +VYFCGPE+N+SNRVLR + IDNFLR+SF+D
Sbjct: 348 LKNPPQPPILTLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVD 407
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
E+L K++ST+LSPR SS+ + +T+I+ RILS LR+GI IGD+KFEFLA+SSSQLRE++A
Sbjct: 408 EELGKMYSTELSPRASSSLEDGKTKIFKRILSVLRDGITIGDKKFEFLAYSSSQLRENAA 467
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
WMFA + LTAA+IR+WMG+F IRNVAKYAARLGQSF SS ETLSV E+++IPD+++
Sbjct: 468 WMFAPKNELTAAKIRQWMGDFHNIRNVAKYAARLGQSFGSSTETLSVSRREVKVIPDIEV 527
Query: 422 EIGK-TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
E G YVFSDGIGK++A FARKVA KCG++ + PSAFQIRY G+KGV++ DPTSS KL
Sbjct: 528 ESGSGVNYVFSDGIGKIAASFARKVAKKCGIR-HTPSAFQIRYAGFKGVISVDPTSSVKL 586
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR+SM KYES TKLDVL+WSKY PCFLNRQLI+LLSTLG+ D +FE KQ+E + +LD
Sbjct: 587 SLRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDT 646
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
I +DPLKAQ+ALELMSPGENT ILKE+++CGYKPD+EPFL MML TFR SKL+ELR K+R
Sbjct: 647 IFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSR 706
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
IFIPNGR+MMGCLDETR L YG+VFVQ S ++QLH + +F +S + FIV G VVV
Sbjct: 707 IFIPNGRAMMGCLDETRNLEYGEVFVQCS--AHQQLHDDRVIFKRIKSNRHFIVTGTVVV 764
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
AKNPCLHPGDVRVL AV+VP+LHHM+DCVVFPQKG R
Sbjct: 765 AKNPCLHPGDVRVLTAVDVPSLHHMIDCVVFPQKGSR 801
>gi|142942403|gb|ABO92978.1| putative RNA-dependent RNA-polymerase [Solanum tuberosum]
Length = 935
Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/698 (65%), Positives = 556/698 (79%), Gaps = 19/698 (2%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
KFAVL V++ FG G++ F LS +Y+L+L YENIW++ LH P Q ++LLI
Sbjct: 110 KFAVL-GSTEVSIKFGIGLKNFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLI 168
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
QL GAPRI+++ E+ ++FFKE PDDQWVRTTDFTPS +IG S+ LC++
Sbjct: 169 QLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLQFRR 219
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLL 180
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ L
Sbjct: 220 GVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSL 279
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQ+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y
Sbjct: 280 VQHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYF 337
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+
Sbjct: 338 KGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 397
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 398 DEEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 456
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLTA +IR WMG+F +I+NVAKYAAR GQSF SS+ETLSV EIE+IPDVK
Sbjct: 457 VWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVK 516
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ T YVFSDGIGK+SA+FARKVAS CGL+ P SAFQIRYGGYKGVVA DP SS KL
Sbjct: 517 VH--GTSYVFSDGIGKISADFARKVASNCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKL 573
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDA
Sbjct: 574 SLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDA 633
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
IL D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+R
Sbjct: 634 ILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSR 693
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVV 659
IFIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VV
Sbjct: 694 IFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVV 753
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG R
Sbjct: 754 VAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKR 791
>gi|350537951|ref|NP_001234319.1| RNA-directed RNA polymerase [Solanum lycopersicum]
gi|4038592|emb|CAA71421.1| RNA-directed RNA polymerase [Solanum lycopersicum]
Length = 1114
Score = 926 bits (2394), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/698 (65%), Positives = 557/698 (79%), Gaps = 19/698 (2%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
KFAVL V++ FG G++K F LS +Y+L+L YENIW++ LH P Q ++LLI
Sbjct: 110 KFAVLG-STEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLI 168
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
QL GAPRI+++ E+ ++FFKE PDDQWVRTTDF PS +IG S+ LC++
Sbjct: 169 QLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFPPS-WIGLSSSLCLQFRR 219
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLL 180
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GI++PY+ILFKI+ L
Sbjct: 220 GVRLPNFEESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGISIPYKILFKISSL 279
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQ+GC+ GP L+ F+RLVDP R +++CIEHAL+KLY++KECCY+P RWLT+QY Y+
Sbjct: 280 VQHGCIPGPALNVYFFRLVDPRRR--NVACIEHALEKLYYIKECCYDPVRWLTEQYDGYL 337
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+
Sbjct: 338 KGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 397
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ +K++STDL P+ S+ + + RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 398 DEEWEKLYSTDLLPKASTGSGV-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 456
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SS+ETLSV EIE+IPDVK
Sbjct: 457 VWMFASRPGLTANDIRAWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVK 516
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ T YVFSDGIGK+S +FA +VASKCGL+ PSAFQIRYGGYKGVV DP SS KL
Sbjct: 517 VH--GTSYVFSDGIGKISGDFAHRVASKCGLQ-YTPSAFQIRYGGYKGVVGVDPDSSMKL 573
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM KYES+ KLDVL WSKYQPC+LNRQLI+LLSTLG+ DE+ E+KQ+EAV QLDA
Sbjct: 574 SLRKSMSKYESDNIKLDVLGWSKYQPCYLNRQLITLLSTLGVKDEVLEQKQKEAVDQLDA 633
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
IL D LKAQEALELMSPGENTNILK +L CGYKPDAEPFLSMMLQTFRASKLL+LRT++R
Sbjct: 634 ILHDSLKAQEALELMSPGENTNILKAMLNCGYKPDAEPFLSMMLQTFRASKLLDLRTRSR 693
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS-RQRFIVQGLVV 659
IFIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+ + + F++SRS FI++G VV
Sbjct: 694 IFIPNGRTMMGCLDESRTLEYGQVFVQFTGAGHGEFSDDLHPFNNSRSTNSNFILKGNVV 753
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGD+RVLKAVNV ALHHMVDCVVFPQKG R
Sbjct: 754 VAKNPCLHPGDIRVLKAVNVRALHHMVDCVVFPQKGKR 791
>gi|383100937|emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
Length = 1107
Score = 925 bits (2391), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/698 (65%), Positives = 555/698 (79%), Gaps = 23/698 (3%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+KF LW +V V+FG GMRK++F S ++YRLEL YENIW+I+LH P+ + +K+L+
Sbjct: 112 QKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLV 171
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQ++GAP+IF+K + +LL+ + +F+ + D+QW+RTTDFT S+ IGQST C+ELP
Sbjct: 172 IQVIGAPKIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELP 229
Query: 122 YRLELPDFKENFAYYKESEDR-FVLETGSAYSRSLD-LVPIVGPPDGIALPYEILFKINL 179
L +PDF+ENFA Y E F++E+GS+YS + + LVP+V PP G LP+EILFK+N
Sbjct: 230 VHLNVPDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNT 289
Query: 180 LVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKY 239
LVQN C+ GP LD + Y+L++P + + + I+H L+KL+HL E CYEP+RWL QY++
Sbjct: 290 LVQNACLPGPALDLDVYQLLNPKK--YNRALIDHCLEKLFHLGESCYEPARWLRKQYKEL 347
Query: 240 MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
+ P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFLR+SF
Sbjct: 348 SSKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSF 407
Query: 300 IDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRES 359
+DEDL+K+ S DLSPR S+ RT++Y RI S LR+GI+IGD+KFEFLAFSSSQLRE+
Sbjct: 408 VDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLREN 464
Query: 360 SAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 419
SAWMFA GLT+A IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+IPDV
Sbjct: 465 SAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDV 524
Query: 420 KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 479
+I T+YVFSDGIGK+SAEFAR+VA KCGL + PSAFQIRYGGYKGVVA DP SSKK
Sbjct: 525 EIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKK 584
Query: 480 LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
LSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLG+ D +F+KKQRE V +LD
Sbjct: 585 LSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVKDSVFKKKQREVVDRLD 644
Query: 540 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
AILTDPL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLELRTKT
Sbjct: 645 AILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKT 704
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
RIFI GRSMMGCLDETRTL YGQV VQ S R +RFI+ G VV
Sbjct: 705 RIFISGGRSMMGCLDETRTLEYGQVVVQYS--------------DPMRPGRRFIITGPVV 750
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGDVRVL+AVNVPAL+HMVDCVVFPQKG+R
Sbjct: 751 VAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLR 788
>gi|297849898|ref|XP_002892830.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297338672|gb|EFH69089.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1107
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/694 (65%), Positives = 553/694 (79%), Gaps = 23/694 (3%)
Query: 6 VLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLL 65
LW +V+V+FG GMRK++F S ++YRLEL YENIW+I+LH P+ + +K+L+IQ++
Sbjct: 116 TLWSAQDVSVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLVIQVI 175
Query: 66 GAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE 125
GAP+IF+K + +LL+ + +F+ + D+QW+RTTDFT S+ IGQST C+ELP L
Sbjct: 176 GAPKIFEKEDQPINLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELPVHLN 233
Query: 126 LPDFKENFAYYKESE-DRFVLETGSAYSRSLD-LVPIVGPPDGIALPYEILFKINLLVQN 183
+PDF+ENFA Y E +++E+GS+YS + + LVP+V PP G LP+EILFK+N LVQN
Sbjct: 234 VPDFRENFANYAEHRASTYLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNTLVQN 293
Query: 184 GCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSR 243
C+ GP LD + Y+L++P + + + I+H L+KL++L E CYEP+RWL QY++ +
Sbjct: 294 ACLPGPALDLDVYQLLNPKK--IDRALIDHCLEKLFYLGESCYEPARWLRKQYKELSSKG 351
Query: 244 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 303
P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFLR+SF+DED
Sbjct: 352 KLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSFVDED 411
Query: 304 LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM 363
L+K+ S DLSPR S+ RT++Y RI S LR+GI+IGD+KFEFLAFSSSQLRE+SAWM
Sbjct: 412 LEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLRENSAWM 468
Query: 364 FASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 423
FA GLT+A IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+IPDV+I
Sbjct: 469 FAPIEGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIIS 528
Query: 424 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLR 483
T+YVFSDGIGK+SAEFAR+VA KCGL + PSAFQIRYGGYKGVVA DP SSKKLSLR
Sbjct: 529 LGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLR 588
Query: 484 DSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 543
SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLG+ D +FEKKQRE V +LDAILT
Sbjct: 589 KSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGVEDSVFEKKQREVVDRLDAILT 648
Query: 544 DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
DPL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLELRTKTRIFI
Sbjct: 649 DPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFI 708
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
GRSMMGCLDETRTL YGQV VQ S R +RFI+ G VVVAKN
Sbjct: 709 SGGRSMMGCLDETRTLEYGQVVVQYS--------------DPMRPGRRFIITGPVVVAKN 754
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
PCLHPGDVRVL+AVNVPAL+HMVDCVVFPQKG+R
Sbjct: 755 PCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLR 788
>gi|449457379|ref|XP_004146426.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|449491619|ref|XP_004158954.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
gi|316989899|gb|ADU77015.1| RNA-dependent RNA polymerase 1a [Cucumis sativus]
Length = 1130
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/697 (66%), Positives = 554/697 (79%), Gaps = 7/697 (1%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+KF VLW G V FG GMRK+NF L + EYRLEL YE IW+I+LHCPR Q KYLL
Sbjct: 111 EKFRVLWEGNVDLVTFGIGMRKMNFHLKYKSVEYRLELSYEIIWQIQLHCPRDQSMKYLL 170
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQL GAPRI++K + ++++P+ NFFKE DDQWVRTTDFT S IGQS+ LC++LP
Sbjct: 171 IQLSGAPRIYKKVAPNSGQIFDNPLLNFFKEASDDQWVRTTDFTSSCSIGQSSSLCLKLP 230
Query: 122 YRLELPDFKENFAYYKESEDRF-VLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLL 180
+LP FK+NFAYY+E E F +++ + +S DL PIV + LPY+ILFKIN L
Sbjct: 231 NGRQLPPFKQNFAYYEEFEHEFRLIDEDANFSFCRDLAPIVDSRSHV-LPYKILFKINAL 289
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQ GC+ PLLD++FYRLV+ I +EHAL+KL+HLKEC Y+PS +LT+QYRKY
Sbjct: 290 VQYGCIPWPLLDASFYRLVERI-ITTRIEFVEHALEKLFHLKECNYDPSNFLTEQYRKY- 347
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
SR P+SP ISLDDGLVYV RVQ+TP +V+FCGPE+NVSNRVLRHF + IDNFLR+SF+
Sbjct: 348 -SRHPPNSPVISLDDGLVYVRRVQITPCKVFFCGPEVNVSNRVLRHFSQYIDNFLRVSFV 406
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ DK+ STDL PR SS ++ +T IY RILS L+NGI+IGD+ F+FLAFSSSQLR++S
Sbjct: 407 DEEWDKMRSTDLLPRMSSKSEDGKTDIYRRILSVLKNGIVIGDKTFQFLAFSSSQLRDNS 466
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFAS + AA IR WMG+FR I+N AKYAARLGQSF SS E LSV +E EIIPD++
Sbjct: 467 LWMFASGPDIDAAYIRAWMGDFRHIKNPAKYAARLGQSFGSSTEALSVASNEREIIPDIE 526
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
++ G+ KYVFSDGIGK+S++FA++VA+KCG + PSAFQIRYGGYKGVVA DP S+ KL
Sbjct: 527 VQQGEIKYVFSDGIGKISSKFAKEVAAKCGFQ-AVPSAFQIRYGGYKGVVAVDPYSTIKL 585
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM K+ES+ TKLDVL SKYQPCFLNRQLI+L+STLG+ DEIFEKKQ EAV QLDA
Sbjct: 586 SLRKSMCKFESDNTKLDVLGHSKYQPCFLNRQLITLMSTLGVRDEIFEKKQSEAVEQLDA 645
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
ILTDPLKAQEALELMSPGENTNILKE+L CGY+PD EP+LSMMLQTFRASKLLELRTK+R
Sbjct: 646 ILTDPLKAQEALELMSPGENTNILKEMLKCGYQPDVEPYLSMMLQTFRASKLLELRTKSR 705
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
IFIPNGR+MMGCLDETRTL YGQVFVQIS +R L ES F+ +++G V V
Sbjct: 706 IFIPNGRAMMGCLDETRTLEYGQVFVQISSGRHRNL-SESFAFNRIGREHHLVIEGNVTV 764
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
AKNPCLHPGDVRVLKAVN+P L+HMVDCVVFPQKG R
Sbjct: 765 AKNPCLHPGDVRVLKAVNIPGLYHMVDCVVFPQKGSR 801
>gi|377347180|dbj|BAL63010.1| RNA-dependent RNA polymerase 1 [Cucumis sativus]
Length = 1115
Score = 917 bits (2370), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/697 (62%), Positives = 548/697 (78%), Gaps = 7/697 (1%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+ F+VLW NV+V+FGF +RK+ F +S+ +Y L L YENIW++ELH P Q YLL
Sbjct: 111 ESFSVLWTESNVSVDFGFDVRKLYFFISYPRVDYMLVLRYENIWQVELHKPHGQSVDYLL 170
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQL GAPRI+++ RS L+ E P NF E+ D QW R TDFTPS IGQS LC+E+
Sbjct: 171 IQLFGAPRIYERDARSFGLITEDPFLNFSTEI-DTQWFRATDFTPSCSIGQSAALCLEIL 229
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
Y +LP+F + FAY+KE + +F L +GS YS +++LVP+V PP I LPY ILFKINLLV
Sbjct: 230 YGRQLPNFHDKFAYFKEIKGKFTLVSGSTYSSNVNLVPVVTPPRTINLPYTILFKINLLV 289
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
Q GC+ GP LD +FY++VD + + I+HAL KL HLKECCY PS+WL ++YRKY
Sbjct: 290 QQGCLPGPALDISFYQMVD--SQIYNTAVIDHALKKLLHLKECCYNPSKWLDEEYRKYFK 347
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
++ P P ++L++GLVYVHRVQVTP +VYFCGPE+N+SNRVLR + IDNFLR+SF+D
Sbjct: 348 LKNPPQPPILTLNEGLVYVHRVQVTPCKVYFCGPEVNISNRVLRRYPDYIDNFLRVSFVD 407
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
E+L K++ST+LSPR SS+ + +T+I RILS LR+GI IGD+KFEFLA+SSSQLRE++A
Sbjct: 408 EELGKMYSTELSPRASSSLEDGKTKILKRILSVLRDGITIGDKKFEFLAYSSSQLRENAA 467
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
WMFA + LTAA+IR+WMG+F IRNVAKYAARLGQ F SS ETLSV E+++IPD+++
Sbjct: 468 WMFAPKNELTAAKIRQWMGDFHNIRNVAKYAARLGQPFGSSTETLSVSRREVKVIPDIEV 527
Query: 422 EIGK-TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
E G YVFSDGIGK++A FARKVA KCG++ + PSAFQIRY G+KGV++ DPTSS KL
Sbjct: 528 ESGSGVNYVFSDGIGKIAASFARKVAKKCGIR-HTPSAFQIRYAGFKGVISVDPTSSVKL 586
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR+SM KYES TKLDVL+WSKY PCFLNRQLI+LLSTLG+ D +FE KQ+E + +LD
Sbjct: 587 SLRNSMLKYESTDTKLDVLSWSKYHPCFLNRQLITLLSTLGVQDHVFESKQQELIDELDT 646
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
I +DPLKAQ+ALELMSPGENT ILKE+++CGYKPD+EPFL MML TFR SKL+ELR K+R
Sbjct: 647 IFSDPLKAQQALELMSPGENTKILKEMMLCGYKPDSEPFLRMMLHTFRESKLMELRMKSR 706
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
IFIPNGR+MMGCLDETR L YG+VF Q S ++QLH + +F +S + FIV G VVV
Sbjct: 707 IFIPNGRAMMGCLDETRNLEYGEVFWQCS--AHQQLHDDRVIFKRIKSNRHFIVTGTVVV 764
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
AKNPCLHPGDVRVL AV+VP+LHHM+DCVVFPQKG R
Sbjct: 765 AKNPCLHPGDVRVLTAVDVPSLHHMIDCVVFPQKGSR 801
>gi|297805194|ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
Length = 1097
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/698 (64%), Positives = 547/698 (78%), Gaps = 33/698 (4%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+KF LW +V V+FG GMRK++F S ++YRLEL YENIW+I+LH P+ + +K+L+
Sbjct: 112 QKFLTLWSAQDVCVSFGIGMRKLHFSFSWYQKDYRLELSYENIWQIDLHSPQGRSSKFLV 171
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQ +K I +LL+ + +F+ + D+QW+RTTDFT S+ IGQST C+ELP
Sbjct: 172 IQK-------KKPI---NLLFG--MMDFYSDGSDEQWIRTTDFTSSSCIGQSTAFCLELP 219
Query: 122 YRLELPDFKENFAYYKESEDR-FVLETGSAYSRSLD-LVPIVGPPDGIALPYEILFKINL 179
L +PDF+ENFA Y E F++E+GS+YS + + LVP+V PP G LP+EILFK+N
Sbjct: 220 VHLNVPDFRENFANYAEHRASPFLIESGSSYSSNANKLVPVVDPPPGFDLPFEILFKLNT 279
Query: 180 LVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKY 239
LVQN C+ GP LD + Y+L++P + + + I+H L+KL++L E CYEP+RWL QY++
Sbjct: 280 LVQNACLPGPALDLDVYQLLNPKK--IDRALIDHCLEKLFYLGESCYEPARWLRKQYKEL 337
Query: 240 MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
+ P SP ISLDDGLVY++RVQVTP+RVYF GPE+NVSNRVLRH+ + I+NFLR+SF
Sbjct: 338 SSKGKLPLSPTISLDDGLVYMYRVQVTPARVYFSGPEVNVSNRVLRHYSKYINNFLRVSF 397
Query: 300 IDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRES 359
+DEDL+K+ S DLSPR S+ RT++Y RI S LR+GI+IGD+KFEFLAFSSSQLRE+
Sbjct: 398 VDEDLEKVRSMDLSPRSSTQR---RTKLYDRIYSVLRDGIVIGDKKFEFLAFSSSQLREN 454
Query: 360 SAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 419
SAWMFA GLT+A IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+IPDV
Sbjct: 455 SAWMFAPIDGLTSAHIRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDV 514
Query: 420 KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 479
+I T+YVFSDGIGK+SAEFAR+VA KCGL + PSAFQIRYGGYKGVVA DP SSKK
Sbjct: 515 EIISLGTRYVFSDGIGKISAEFARRVAKKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKK 574
Query: 480 LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
LSLR SM K+ESE TKLDVLAWSKYQPC++NRQLI+LLSTLGI D +FEKKQRE V +LD
Sbjct: 575 LSLRKSMSKFESENTKLDVLAWSKYQPCYMNRQLITLLSTLGIKDSVFEKKQREVVDRLD 634
Query: 540 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
AILTDPL+A EAL LM+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLELRTKT
Sbjct: 635 AILTDPLEAHEALGLMAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKT 694
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
RIFI GRSMMGCLDETRTL YGQV VQ S R +RFI+ G VV
Sbjct: 695 RIFISGGRSMMGCLDETRTLEYGQVVVQYS--------------DPMRPGRRFIITGPVV 740
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGDVRVL+AVNVPAL+HMVDCVVFPQKG+R
Sbjct: 741 VAKNPCLHPGDVRVLEAVNVPALNHMVDCVVFPQKGLR 778
>gi|224111420|ref|XP_002315849.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222864889|gb|EEF02020.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1102
Score = 902 bits (2331), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/697 (61%), Positives = 544/697 (78%), Gaps = 13/697 (1%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+KF+VLW +V+V FG +RK +F L+HL + Y+LEL YENI++IELH PR + KYLL
Sbjct: 115 EKFSVLWTQKDVSVKFGVELRKFHFFLTHLSKNYKLELSYENIFQIELHRPRGKTKKYLL 174
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
+Q+LG P+IF+K ++ + FKE DDQW+R DF+PS IGQS+ LC+ELP
Sbjct: 175 VQMLGGPKIFKK---------DTSKLSNFKEATDDQWIRDVDFSPSYCIGQSSALCLELP 225
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
+LP+F+ENF YKE E F+LE GS + DLVPI+ LPY+I+FK+N LV
Sbjct: 226 PNSQLPNFQENFVCYKEDEGHFILEKGSTFCCKSDLVPILSAAQVSELPYDIVFKVNSLV 285
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
Q+GC+ GP LD+ F+RL++P + ++ + I+HAL+KL HLKECCY+P+RWL +QY+KY+T
Sbjct: 286 QHGCLPGPALDARFFRLINPSKIRIAHAYIQHALEKLSHLKECCYDPARWLREQYQKYLT 345
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
+ P+ PAI++DDGLV++ RVQ+TP+++YFCGP++N+SNRVLR + DIDNFLR+SF+D
Sbjct: 346 TGRLPTPPAIAVDDGLVFLRRVQITPTKLYFCGPDVNLSNRVLRKYPGDIDNFLRVSFVD 405
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
EDLDK+ S ++SPR SA + +T IY RILS RNGI IG +KFEFL FS SQ+RESS
Sbjct: 406 EDLDKLFSANISPRTFSAIEGRQTNIYQRILSVQRNGITIGSKKFEFLGFSQSQVRESSL 465
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
WMFASR GLTAA+IREWMG+FREI+NVAKYAARLGQSFSSS+E+ ++ EIEIIPD+++
Sbjct: 466 WMFASRPGLTAADIREWMGDFREIKNVAKYAARLGQSFSSSRESFNIDRHEIEIIPDIEV 525
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 481
+ G YVFSDGIGK+SAE A +A K L+ PSAFQIRYGGYKGVVA DPTSS KLS
Sbjct: 526 KSGGVNYVFSDGIGKISAELADSIARKLRLRSFTPSAFQIRYGGYKGVVAVDPTSSMKLS 585
Query: 482 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 541
LR SM KY+S T LD+L WSKY+ CFLNR++I LLSTLG+ D++FE+KQ+EA+ QLDAI
Sbjct: 586 LRRSMSKYKSTNTSLDILDWSKYRACFLNREVIILLSTLGVKDQVFERKQKEAIAQLDAI 645
Query: 542 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
LTDP+KAQEALELM+ GEN +L +L CGYKP AEPFL+MML+TFRA KLL+LRTK+RI
Sbjct: 646 LTDPIKAQEALELMAGGENARVLNGMLACGYKPGAEPFLAMMLETFRALKLLDLRTKSRI 705
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR-FIVQGLVVV 660
F+PNGR+M GCLDETRTL YGQ FVQ S A + H F ++ Q IV+G +VV
Sbjct: 706 FVPNGRAMTGCLDETRTLEYGQAFVQYSRARLSKSHDH---FKGGKTDQHTLIVRGKIVV 762
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
AKNPCLHPGDV++LKAV+VPALHHMVDC+VFPQKG R
Sbjct: 763 AKNPCLHPGDVQILKAVDVPALHHMVDCIVFPQKGKR 799
>gi|113205257|gb|AAT38687.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1139
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/710 (63%), Positives = 549/710 (77%), Gaps = 31/710 (4%)
Query: 13 VTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQ 72
+T+NFG + F + LG E+ LH P Q ++LLIQL GAPRI++
Sbjct: 124 ITLNFGCQISDDKFAV--LGST-----------EVVLHRPYGQNAQFLLIQLFGAPRIYK 170
Query: 73 KGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKEN 132
+ E+ ++FFKE PDDQWVRTTDF PS +IG S+ LC++ + LP+F+E+
Sbjct: 171 R--------LENSCYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRRGVHLPNFQES 221
Query: 133 FAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPL 190
F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LVQ+GC+ GP
Sbjct: 222 FFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGPA 281
Query: 191 LDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPA 250
LD F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+ R P SP+
Sbjct: 282 LDVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSPS 339
Query: 251 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 310
I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+DE+ +K++ST
Sbjct: 340 ITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYST 399
Query: 311 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 370
DL P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S WMFASR GL
Sbjct: 400 DLLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPGL 458
Query: 371 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
TA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK+ T YVF
Sbjct: 459 TANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVH--GTSYVF 516
Query: 431 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYE 490
SDGIGK+SA+FAR+VASKCGL+ PSAFQIRYGGYKGVVA DP SS KLSLR SM KYE
Sbjct: 517 SDGIGKISADFARRVASKCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKYE 575
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
S+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDAIL D LKAQE
Sbjct: 576 SDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQE 635
Query: 551 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
ALELMSPGENT ILK +L CGY PDAEPFLSMMLQTFRASKLL+LRT++RIFIPNGR+MM
Sbjct: 636 ALELMSPGENTTILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAMM 695
Query: 611 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVVAKNPCLHPG 669
GCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVVAKNPCLHPG
Sbjct: 696 GCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHPG 755
Query: 670 DVRVLKAVNVPALHHMVDCVVFPQKGMRYILTMLKPRLLWYELNSSHALP 719
D+RVL+AV+VPALHHMVDCVVFPQKG R + E+ S++ LP
Sbjct: 756 DIRVLRAVDVPALHHMVDCVVFPQKGKRLGMYFNCLPTSEVEVKSAYTLP 805
>gi|224099569|ref|XP_002311535.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222851355|gb|EEE88902.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1139
Score = 892 bits (2304), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/696 (62%), Positives = 536/696 (77%), Gaps = 23/696 (3%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+KF LW NV+V FGFG RKI L++L +Y+LEL YENIW+IELH PR Q K+L+
Sbjct: 141 EKFYALWNKENVSVKFGFGNRKIYLFLTYLSTKYKLELSYENIWQIELHRPRGQAKKFLI 200
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
+Q+LGA +I +K DDQWVR DF+PS IGQS+ LC+ELP
Sbjct: 201 VQMLGAAKILKKDT-------------------DDQWVRDVDFSPSYCIGQSSALCLELP 241
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
+LP+F+ENF YKE E RF LE GS + R DLVPI+ GI LPY+I+FK+N LV
Sbjct: 242 RSGQLPNFQENFPCYKEDEGRFFLEVGSTFCRVSDLVPILREAQGIELPYDIVFKVNSLV 301
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
Q+G + GP LD++FYRL++P R V+I+ I++AL+KL+H ECCY+P RWL ++YRK ++
Sbjct: 302 QHGYLPGPALDASFYRLINPSR--VNIAHIQNALEKLHHSMECCYDPVRWLREEYRKCIS 359
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
+ P+ PA+++DDGLV+V RVQ+TP++VYF GPE+N+SNRVLR + DIDNFLR+SF+D
Sbjct: 360 TGRLPTPPAVAVDDGLVHVRRVQITPTKVYFRGPEVNLSNRVLRKYPDDIDNFLRVSFVD 419
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
EDLDK+ ST++SPR SA + +T+IY RILST RNGI+IG +KFEFL FSSSQLRESS
Sbjct: 420 EDLDKLFSTNISPRTFSAIEGRQTKIYQRILSTQRNGIVIGSKKFEFLGFSSSQLRESSL 479
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
WMFASR GL AA+IR WMG+FREI+NVAKYAARLGQSF SS+E+ ++ EIE IPD+++
Sbjct: 480 WMFASRTGLRAADIRRWMGDFREIKNVAKYAARLGQSFGSSRESFNIDEKEIEKIPDIEV 539
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 481
G YVFSDGIGK+SA A +A K G PSAFQIRYGGYKGVVA DPTS KKLS
Sbjct: 540 RSGGVDYVFSDGIGKISAALAHSIAQKFGFLSFTPSAFQIRYGGYKGVVAVDPTSLKKLS 599
Query: 482 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 541
LR SM KY+S T LD+L WSKYQ C+LNR++I+LLSTLG+ D IF++KQ+EA+ QL+AI
Sbjct: 600 LRRSMSKYKSTNTSLDILGWSKYQACYLNREVITLLSTLGVRDHIFQRKQKEAIAQLNAI 659
Query: 542 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
LTDP AQEALELM+PGE+TN+LKE+L CGYKP AEPFL+MMLQTF ASKLL+LRT+ RI
Sbjct: 660 LTDPSSAQEALELMAPGESTNVLKEMLACGYKPGAEPFLAMMLQTFCASKLLDLRTRARI 719
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
FIP GR+MMGCLDETRTL YGQ FVQ S A + Q S + R+ Q I++G ++VA
Sbjct: 720 FIPKGRAMMGCLDETRTLGYGQAFVQYSSARHGQFRDHSRGGEAVRNTQ--ILKGKLIVA 777
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
KNPCLHPGDVRVL+AVNVPALHHMVDC+VFPQKG R
Sbjct: 778 KNPCLHPGDVRVLEAVNVPALHHMVDCIVFPQKGKR 813
>gi|113205325|gb|AAT38751.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1180
Score = 891 bits (2302), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/689 (64%), Positives = 541/689 (78%), Gaps = 31/689 (4%)
Query: 12 NVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIF 71
+T+NFG + F + LG E+ LH P Q ++LLIQL GAPRI+
Sbjct: 97 GITLNFGCQISDDKFAV--LGST-----------EVVLHRPYGQNAQFLLIQLFGAPRIY 143
Query: 72 QKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKE 131
++ E+ ++FFKE PDDQWVRTTDF PS +IG S+ LC++ + LP+F+E
Sbjct: 144 KR--------LENSCYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRRGVHLPNFQE 194
Query: 132 NFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGP 189
F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ LVQ+GC+ GP
Sbjct: 195 IFFHYTERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSLVQHGCIPGP 254
Query: 190 LLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSP 249
LD F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+ R P SP
Sbjct: 255 ALDVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYLKGRQPPKSP 312
Query: 250 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 309
+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+DE+ +K++S
Sbjct: 313 SITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKLYS 372
Query: 310 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 369
TDL P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S WMFASR G
Sbjct: 373 TDLLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNSVWMFASRPG 431
Query: 370 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 429
LTA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK+ T YV
Sbjct: 432 LTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVKVH--GTSYV 489
Query: 430 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKY 489
FSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KLSLR SM KY
Sbjct: 490 FSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKLSLRKSMSKY 548
Query: 490 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 549
ES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDAIL D LKAQ
Sbjct: 549 ESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDAILHDSLKAQ 608
Query: 550 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
EALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRT++RIFIPNGR+M
Sbjct: 609 EALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSRIFIPNGRAM 668
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVVAKNPCLHP 668
MGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VVVAKNPCLHP
Sbjct: 669 MGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVVVAKNPCLHP 728
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GD+RVL+AV+VPALHHMVDCVVFPQKG R
Sbjct: 729 GDIRVLRAVDVPALHHMVDCVVFPQKGKR 757
>gi|113205194|gb|AAT39936.2| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 1137
Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/698 (64%), Positives = 544/698 (77%), Gaps = 35/698 (5%)
Query: 7 LWRGVN----VTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
LW V+ +T+NFG + F + LG E+ LH P Q ++LLI
Sbjct: 158 LWAYVDHMDGITLNFGCQISDDKFAV--LGST-----------EVVLHRPYGQNAQFLLI 204
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
QL GAPRI+++ E+ ++FFKE PDDQWVRTTDFTPS +IG S+ LC++
Sbjct: 205 QLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLQFRR 255
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLL 180
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ L
Sbjct: 256 GVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSL 315
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQ+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y
Sbjct: 316 VQHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYF 373
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+
Sbjct: 374 KGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 433
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 434 DEEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 492
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLTA +IR WMG+F +I+NVAKYAAR GQSF SS+ETLSV EIE+IPDVK
Sbjct: 493 VWMFASRRGLTANDIRSWMGDFSQIKNVAKYAARFGQSFGSSRETLSVLRHEIEVIPDVK 552
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ T YVFSDGIGK+SA+FARKVAS CGL+ PSAFQIRYGGYKGVVA DP SS KL
Sbjct: 553 VH--GTSYVFSDGIGKISADFARKVASNCGLQ-YTPSAFQIRYGGYKGVVAVDPYSSMKL 609
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDA
Sbjct: 610 SLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVDQLDA 669
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
IL D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+R
Sbjct: 670 ILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSR 729
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVV 659
IFIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VV
Sbjct: 730 IFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVV 789
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG R
Sbjct: 790 VAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKR 827
>gi|113205403|gb|ABI34378.1| RNA-directed RNA polymerase, putative [Solanum tuberosum]
Length = 1050
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/653 (66%), Positives = 525/653 (80%), Gaps = 23/653 (3%)
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
+L GAPRI+++ E+ ++FFKE PDDQWVRTTDF PS +IG S+ LC++
Sbjct: 17 RLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRR 67
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLL 180
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ L
Sbjct: 68 GVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSL 127
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQ+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 128 VQHGCIPGPSLNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYL 185
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+
Sbjct: 186 KGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 245
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 246 DEEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 304
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SS ETLSV EIE+IPDVK
Sbjct: 305 VWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSTETLSVLRHEIEVIPDVK 364
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KL
Sbjct: 365 VH--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKL 421
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM KYES+ KLDVL WSKYQPCFLNRQLI+LLSTLG+ D+I E+KQ+EAV QLDA
Sbjct: 422 SLRKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVKDDILEQKQKEAVDQLDA 481
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
IL D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+R
Sbjct: 482 ILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSR 541
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVV 659
IFIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VV
Sbjct: 542 IFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVV 601
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTMLKPRLLWYEL 712
VAKNPCLHPGD+RVL+AVNVPALHHMVDCVVFPQKG R + + LW E+
Sbjct: 602 VAKNPCLHPGDIRVLRAVNVPALHHMVDCVVFPQKGKRRLYSN-----LWVEI 649
>gi|113205271|gb|AAT38699.2| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 875 bits (2261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/638 (67%), Positives = 520/638 (81%), Gaps = 18/638 (2%)
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
QL GAPRI+++ E+ ++FFKE PDDQWVRTTDFTPS +IG S+ LC++
Sbjct: 17 QLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLQFRR 67
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLL 180
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ L
Sbjct: 68 GVHLPNFQESFFHYAERENNITLQTGFTFFVSQKSALVPNVQPPEGIAIPYKILFKISSL 127
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQ+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 128 VQHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYL 185
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+
Sbjct: 186 KGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 245
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 246 DEEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 304
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLT +IR WMG+F +I+NVAKYAARLGQSF SS+ETLSV EIE+IPDVK
Sbjct: 305 VWMFASRRGLTTNDIRSWMGDFSQIKNVAKYAARLGQSFGSSRETLSVLRHEIEVIPDVK 364
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KL
Sbjct: 365 VH--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKL 421
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM KYES+ KLDVL WSKYQPC+LNRQL++LLSTLG+ D++ E+KQ+EAV QLDA
Sbjct: 422 SLRKSMSKYESDNNKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVLEQKQKEAVHQLDA 481
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
IL D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRT++R
Sbjct: 482 ILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSR 541
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVV 659
IFIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VV
Sbjct: 542 IFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVV 601
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG R
Sbjct: 602 VAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKR 639
>gi|113205326|gb|AAT38754.2| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 1021
Score = 873 bits (2255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/660 (66%), Positives = 528/660 (80%), Gaps = 18/660 (2%)
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
+L GAPRI+++ E+ ++FFKE PDDQWVRTTDF PS +IG S+ LC++
Sbjct: 17 RLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRR 67
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLL 180
+ LP+F+E+F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ L
Sbjct: 68 GVHLPNFQESFFHYAERENNITLQTGFTFFISQKSALVPNVQPPEGIAIPYKILFKISSL 127
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQ+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 128 VQHGCIPGPSLNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYL 185
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+
Sbjct: 186 KGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 245
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+KFEFLAFSSSQLR++S
Sbjct: 246 DEEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKFEFLAFSSSQLRDNS 304
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK
Sbjct: 305 VWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVK 364
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KL
Sbjct: 365 VH--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKL 421
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
+LR SM KYES+ KLDVL WSKYQPCFLNRQLI+LLSTLG+ D+I E+KQ+EAV QLDA
Sbjct: 422 TLRKSMSKYESDNNKLDVLGWSKYQPCFLNRQLITLLSTLGVRDDILEQKQKEAVDQLDA 481
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
IL D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+R
Sbjct: 482 ILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSR 541
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVV 659
IFIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VV
Sbjct: 542 IFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVV 601
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTMLKPRLLWYELNSSHALP 719
VAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG R + E+ S++ LP
Sbjct: 602 VAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRLGMYFNCFPTSEVEVKSAYTLP 661
>gi|113205254|gb|ABI34311.1| RNA dependent RNA polymerase family protein [Solanum demissum]
Length = 963
Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/638 (67%), Positives = 518/638 (81%), Gaps = 18/638 (2%)
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
+L GAPRI+++ E+ ++FFKE PDDQWVRTTDF PS +IG S+ LC++
Sbjct: 17 RLFGAPRIYKR--------LENSCYSFFKETPDDQWVRTTDFAPS-WIGLSSSLCLQFRR 67
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAY--SRSLDLVPIVGPPDGIALPYEILFKINLL 180
+ LP+F+E F +Y E E+ L+TG + S+ LVP V PP+GIA+PY+ILFKI+ L
Sbjct: 68 GVHLPNFQEKFFHYAERENNITLQTGFTFFISQKSSLVPNVQPPEGIAIPYKILFKISSL 127
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQ+GC+ GP L+ F+RLVDP R +++CIE AL+KLY+LKECCY+P RWLT+QY Y+
Sbjct: 128 VQHGCIPGPALNVYFFRLVDPQRR--NVACIEQALEKLYYLKECCYDPVRWLTEQYDGYL 185
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+
Sbjct: 186 KGRQPPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 245
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ +K++ST+L P+ S+ I RT IY RILSTLR G +IGD+K EFLAFSSSQLR++S
Sbjct: 246 DEEWEKLYSTELLPKASTGNGI-RTNIYERILSTLRKGFVIGDKKIEFLAFSSSQLRDNS 304
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLTA +IR WMG+F +I+NVAKYAARLGQSF SSKETLSV EIE+IPDVK
Sbjct: 305 VWMFASRPGLTANDIRTWMGDFSQIKNVAKYAARLGQSFGSSKETLSVLRHEIEVIPDVK 364
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ T YVFSDGIGK+SA+FAR+VASKCGL+ P SAFQIRYGGYKGVVA DP SS KL
Sbjct: 365 VH--GTSYVFSDGIGKISADFARRVASKCGLQYTP-SAFQIRYGGYKGVVAVDPYSSMKL 421
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM KYES+ KLDVL WSKYQPC+LNRQLI+LLSTLG+ D++ E+KQ+EAV QLDA
Sbjct: 422 SLRKSMSKYESDNNKLDVLEWSKYQPCYLNRQLITLLSTLGVKDDVLEQKQKEAVDQLDA 481
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
IL D LKAQEALELMSPGENTNILK +L CGY PDAEPFLSMMLQTFRASKLL+LRTK+R
Sbjct: 482 ILHDSLKAQEALELMSPGENTNILKAMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTKSR 541
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVV 659
IFIPNGR+MMGCLDE+RTL YGQVFVQ +GAG+R+ + F++SRS FI++G VV
Sbjct: 542 IFIPNGRAMMGCLDESRTLEYGQVFVQFTGAGHREFSEDLHPFNNSRSTNCNFILKGNVV 601
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGD+RVL+AV+VPALHHMVDCVVFPQKG R
Sbjct: 602 VAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKR 639
>gi|119370382|gb|ABL68088.1| putative RNA-directed RNA polymerase 1 [Nicotiana attenuata]
Length = 1044
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/686 (62%), Positives = 524/686 (76%), Gaps = 25/686 (3%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
KKFAVL +V++ FG G++KI F LS+ +Y+L+L YENIW++ LHCP Q ++LL
Sbjct: 109 KKFAVL-GSKDVSIKFGIGLKKIYFFLSYGSTDYKLQLSYENIWQVVLHCPYGQKAQFLL 167
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
+QL GAPRI ++ E +FFKE PDDQWVRTTDFTPS +IG S+ LC+E
Sbjct: 168 LQLFGAPRIHKR--------LEDSCNSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFH 218
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGS-AYSRSLDLVPIVGPPDGIALPYEILFKINLL 180
+ LP+F +F YYKES + + + ++ + L LVPIV P+G+ LPY+ILFKI+ L
Sbjct: 219 NGVRLPNFSGSFFYYKESGPSYFTDWFTFSFVQKLSLVPIVHLPEGVELPYKILFKISSL 278
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
+Q+GC G L+ NF++LVDP R +I+CIEHAL+KLY+LKECCY+P RWLT+QY +Y+
Sbjct: 279 IQHGCFPGLALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCYDPVRWLTEQYDEYL 336
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R P SP+I+LDDGLVYV RV VTP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+
Sbjct: 337 KHRQLPKSPSITLDDGLVYVRRVLVTPCKVYFCGPEVNVSNRVLRNYSEDIDNFLRVSFV 396
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DE+ +KIHSTDL PR S+ I RT IY RILSTLRNG +IGD+KFEFLAFSSSQLR++S
Sbjct: 397 DEEWEKIHSTDLLPRASTGNGI-RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDNS 455
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLTA +IR WMG+FR+IRNVAKYAARLGQSF SS+ETLSV E+E+IPDV
Sbjct: 456 VWMFASRPGLTANDIRTWMGDFRQIRNVAKYAARLGQSFGSSRETLSVSRHEVEVIPDVV 515
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
+ T Y+FSDGIGK+SA+FA+ S + F IRYGGYKGVVA DP SS KL
Sbjct: 516 CSLHGTNYIFSDGIGKISADFAKMRPSVYSI------FFSIRYGGYKGVVAVDPYSSMKL 569
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR+SM KYES KLDVL WSKYQPC+LNRQL++LLSTLG+ D++FE+KQ EAV QLDA
Sbjct: 570 SLRNSMLKYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDA 629
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
IL D LKAQEALELMSPGENTNILKE+L CGY PDAEPFLSMMLQTFRASKLL+LRT++R
Sbjct: 630 ILHDSLKAQEALELMSPGENTNILKEMLNCGYMPDAEPFLSMMLQTFRASKLLDLRTRSR 689
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVV 659
IFI + + L YGQVFVQ +G G RQ + ES F+ S S F ++G VV
Sbjct: 690 IFIAKWDAWL----NPEPLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCNFTLEGNVV 745
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHM 685
VAKNPCLHPGD+RVL+AV+VPALHHM
Sbjct: 746 VAKNPCLHPGDIRVLRAVDVPALHHM 771
>gi|356519367|ref|XP_003528344.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
Length = 1135
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/701 (60%), Positives = 526/701 (75%), Gaps = 22/701 (3%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
K +VLW NV+V FG +RK+ ++L +Y+L++ E+I IEL K+LL
Sbjct: 111 KLSVLWEHPNVSVKFGSRLRKMYIFFNYLTMDYKLQISSESISRIELRHSDDLTKKFLLF 170
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
QL GAP I++K + +FKE D+ W R DFTPS+ IGQS+ LC ELP
Sbjct: 171 QLRGAPMIYEKDVSKS---------KYFKEACDNHWFRGVDFTPSSSIGQSSTLCFELPQ 221
Query: 123 RLELPDFKENFAYYKESEDR-FVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
+E+P F +++ Y E +D F LE +S + VPIV PP+G LPY+ILFKIN L+
Sbjct: 222 SIEVPKFNQHYRNYSEVDDSIFTLEKHLGFSSNFKFVPIVIPPEGFNLPYKILFKINSLI 281
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
Q+GC+ +D N + LVDP R V + IE AL KL +KECCYEP++WL QY KY T
Sbjct: 282 QHGCLPVLAIDINLFHLVDPRR--VRLEYIESALHKLDQMKECCYEPAQWLEKQYNKYST 339
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
+ P S AISLDDGLVYVHRVQVTPS++YFCGPE+N+SNRVLR++ D DNFLR+SF+D
Sbjct: 340 NSLVPLSSAISLDDGLVYVHRVQVTPSKIYFCGPEVNLSNRVLRNYPEDTDNFLRVSFVD 399
Query: 302 EDLDKIHSTDLSPRGSSATDITR-TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
ED+DK+HS DL PR SS+TD+ R T+++ R+LSTL+NGI IGD+KFEFLAFS SQLR++S
Sbjct: 400 EDMDKLHSADLVPR-SSSTDVDRETKLHERVLSTLKNGIAIGDKKFEFLAFSPSQLRDNS 458
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFASR GLTA++IR+WMG F EIRNVAKYAARLGQSFSSS+ET+SV EIEIIPD++
Sbjct: 459 VWMFASRTGLTASDIRKWMGEFHEIRNVAKYAARLGQSFSSSRETVSVGEHEIEIIPDIE 518
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADPTSSKK 479
+ G+TKY F+DGIGK+S+E A++VA KCG +DN PSAFQIRYGGYKGVVA DPTSS K
Sbjct: 519 LRRGETKYCFTDGIGKISSELAQEVAKKCGCRDNNIPSAFQIRYGGYKGVVAIDPTSSTK 578
Query: 480 LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
LSLR SM KY+SE TKLDVLAWSKY+PC+LNRQ+I+LLSTLG+ D +F KKQRE + QL
Sbjct: 579 LSLRKSMFKYKSENTKLDVLAWSKYKPCYLNRQIITLLSTLGVKDRVFRKKQREILNQLK 638
Query: 540 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
I T PL L+LM GE TNIL+E+LICG+ EPFLSMMLQT ASKL EL+ KT
Sbjct: 639 MISTKPLM---VLDLMFTGEITNILREMLICGFHQTKEPFLSMMLQTLCASKLQELQLKT 695
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR---SRQRFIVQG 656
RI + GR+++GCLDETRTL YG+VFVQI+ +Q+H SL SS+R ++ + IV+G
Sbjct: 696 RILVKKGRALLGCLDETRTLKYGEVFVQIAHQRNKQIHAMPSL-SSNRYGGNKSKHIVKG 754
Query: 657 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VVVAKNPCLHPGDVR+L+AV+VP+LHHMVDCVVFPQKG R
Sbjct: 755 KVVVAKNPCLHPGDVRILRAVDVPSLHHMVDCVVFPQKGRR 795
>gi|197223666|gb|ACH53361.1| RNA-directed RNA polymerase 1b [Hordeum vulgare]
Length = 1115
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/695 (59%), Positives = 525/695 (75%), Gaps = 21/695 (3%)
Query: 4 FAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQ 63
+VLW G NV+V FGF M++I+F L + ++Y+LEL YE+IWEI+LH P K+LLIQ
Sbjct: 117 LSVLWSGTNVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQ 176
Query: 64 LLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYR 123
+ AP+I+++ IR +Y+ P+FN+F++ DDQW RTTDFTPS IGQS LC+ELP+
Sbjct: 177 VQAAPKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILCLELPHI 236
Query: 124 LELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQN 183
LP+ +E F YY+ D F L+ G +YS + VP+V +PYEILFKIN LVQN
Sbjct: 237 CYLPNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQN 296
Query: 184 GCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSR 243
G ++GP LD NFYRLV P I I+ AL+K+ +LK+ C P+ WL++QY+K SR
Sbjct: 297 GTLSGPTLDDNFYRLVSP--GYERIDRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSR 354
Query: 244 SKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 302
+SP I+LDD GLVYV+RVQ+TP++VYF GPEINVSNRV+R++ D+DNFLRISF+DE
Sbjct: 355 VL-TSPNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDE 413
Query: 303 DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 362
D +K+ STDLS R + + RT +Y R+LS L NGI IGD+ F+FLAFSSSQLR++SAW
Sbjct: 414 DCEKLRSTDLSQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAW 473
Query: 363 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 422
MFASR GL+A++IREWMGNFR IRNVAKYAARLGQSFSSS ETL VH E++ PDV
Sbjct: 474 MFASRPGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTETLKVHKYEVKEAPDV--- 530
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 482
T+YVFSDGIG +SA+FA +V+ KC L PSAFQIRYGGYKGVVA DPTS KLSL
Sbjct: 531 TNGTEYVFSDGIGTISADFADEVSKKCNLTRFTPSAFQIRYGGYKGVVAIDPTSQWKLSL 590
Query: 483 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 542
R SM K++S+ LDVLA+SKYQPCFLNRQLI+LLSTLG+ D IFE KQ+EAV+QL+ ++
Sbjct: 591 RKSMSKFQSDNITLDVLAYSKYQPCFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMV 650
Query: 543 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
+P A +A+ELM GE TNI+KELL+CGY+PD EP++SM+LQTFRASKLLEL+T++RIF
Sbjct: 651 AEPQAAIDAIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIF 710
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
+P GR+MMGCLDETRTL YGQVF+Q S +S+ R + +V G V+VAK
Sbjct: 711 VPKGRAMMGCLDETRTLKYGQVFIQAS--------------NSADDRGKSVVTGKVIVAK 756
Query: 663 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
NPC+HPGD+R+L+AV+ P L HMV+CVVFPQ G R
Sbjct: 757 NPCIHPGDIRILQAVHSPLLGHMVNCVVFPQLGPR 791
>gi|197223664|gb|ACH53360.1| RNA-directed RNA polymerase 1a [Hordeum vulgare]
Length = 1114
Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/695 (59%), Positives = 520/695 (74%), Gaps = 20/695 (2%)
Query: 4 FAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQ 63
+VLW G V+V FGF M+KI+F L++ ++Y+LEL YE+IWEI+L+ P K+LLIQ
Sbjct: 117 LSVLWSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQ 176
Query: 64 LLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYR 123
++ AP+I+++ + +Y+ P+FN+F++ DDQW RTTDFTP IGQS LC+ELP
Sbjct: 177 VMAAPKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPAD 236
Query: 124 LELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQN 183
LP+ +E FAYYK F G +YS + VPIV +PYEILFKIN LVQN
Sbjct: 237 CYLPNIREYFAYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQN 296
Query: 184 GCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSR 243
G ++GP LD NFYRLV P V I I+HAL+ + +LK+ C P WL+++Y++ SR
Sbjct: 297 GILSGPTLDDNFYRLVSP--GYVCIDHIKHALENMSYLKKTCLNPINWLSEKYKEIQISR 354
Query: 244 SKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 302
+SP I+LDD GL YV+RVQ+TP++VYF GPEINVSNRV+R++ D++NFLRISF+DE
Sbjct: 355 HMLTSPNIALDDDGLAYVYRVQITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDE 414
Query: 303 DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 362
D +K+ STDLSPR + + +RT +Y RILS L NGI IG++ FEFLAFSSSQLR++SAW
Sbjct: 415 DCEKLRSTDLSPRYAPGNNASRTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAW 474
Query: 363 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 422
MFASR GL+A++IREWMGNFR IRNVAKYAARLGQSFS+S ETL VH E++ +P+V
Sbjct: 475 MFASRTGLSASDIREWMGNFRNIRNVAKYAARLGQSFSASTETLKVHKYEVQALPEV--- 531
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 482
TKYVFSDGIG +SA+FA +V+ KC L PSAFQIRYGGYKGVVA DP S KLSL
Sbjct: 532 TNGTKYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYKGVVAIDPRSHWKLSL 591
Query: 483 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 542
R SM K+ SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D IFE KQ+ AV QL+ ++
Sbjct: 592 RSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLV 651
Query: 543 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
T+P A +A+ELM GE TN++KELL+CGY+PD EP+LSM+LQTFRASKLLEL+TK+RIF
Sbjct: 652 TEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIF 711
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
IP GR+MMGCLDETRTL YG+VF+Q S +S+ +F+V G VVVAK
Sbjct: 712 IPEGRAMMGCLDETRTLKYGEVFIQAS--------------NSANESDKFVVTGKVVVAK 757
Query: 663 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
NPCLHPGD+R+LKAV P L HMV+CVVFPQ+G R
Sbjct: 758 NPCLHPGDIRILKAVYTPVLDHMVNCVVFPQQGPR 792
>gi|242066062|ref|XP_002454320.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
gi|241934151|gb|EES07296.1| hypothetical protein SORBIDRAFT_04g028630 [Sorghum bicolor]
Length = 1114
Score = 834 bits (2154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/697 (60%), Positives = 518/697 (74%), Gaps = 22/697 (3%)
Query: 4 FAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRW--QMTKYLL 61
+ L+ NV+V FGF M+KI F LS+ +Y+LEL YE+IWEI+LH P TK+LL
Sbjct: 117 LSALFTASNVSVQFGFDMKKIYFYLSYNFIKYKLELSYESIWEIQLHRPPAYRSRTKFLL 176
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQ+ AP+I++ R P L+YE P FN+F + D+QW RT DFTPS IGQS+ C+E+P
Sbjct: 177 IQVQAAPKIYELLPRRPGLMYEDPFFNWFMDDTDEQWTRTIDFTPSVSIGQSSIFCLEVP 236
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
+ ELP + F YYKE F G +YS LVPIV PD I +PYEILFKIN LV
Sbjct: 237 QQCELPRIGDYFVYYKERNLDFECRNGYSYSCGNCLVPIVKSPDYIEVPYEILFKINHLV 296
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
QNG ++GP +D +F+ V P P I I+ AL K+ +LK C P+ WL+ QY +
Sbjct: 297 QNGTLSGPTVDHSFFCHVSPEFEP--IDHIKRALLKMSYLKSTCLNPTNWLSVQYSRIRR 354
Query: 242 SR-SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
SR + S ISLDDGLVYVHRVQVTP++VYF GPEINVSNRV+R+F DIDNFLRISF+
Sbjct: 355 SRHASQRSSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRNFSADIDNFLRISFV 414
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DED +K+ S DLSPR +S D RT +Y R+LS L NGI IGD+ FEFLAFSSSQLR++S
Sbjct: 415 DEDCEKLRSLDLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNS 474
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
AWMFASR GLTA++IR+WMG+FR+IRNVAKYAARLGQSFSSS ETL V E+E IPD+K
Sbjct: 475 AWMFASRQGLTASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTETLIVRKHEVEQIPDIK 534
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
T Y+FSDG+GK+SA FA++VA KC L+ PS FQIRYGGYKGVVA DP S++KL
Sbjct: 535 ---NGTNYIFSDGVGKISANFAKEVAMKCKLRRFAPSVFQIRYGGYKGVVAVDPRSNRKL 591
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM K++SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D +FE KQ+EA++QL+
Sbjct: 592 SLRRSMLKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVGDNVFELKQKEAIKQLNR 651
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
++T+P A+EA+ELM GE TN++KELL CGY+PD EP+LSM+LQTFRASKLLEL+TK+R
Sbjct: 652 MVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSR 711
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
IFI GR+MMGCLDETRTL YGQVF+Q S + + +V G VVV
Sbjct: 712 IFITQGRAMMGCLDETRTLKYGQVFIQAS--------------YCADDHHKIVVTGKVVV 757
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
AKNPCLHPGD+RVL+AV+VP+LHHM DCVVFPQ+G R
Sbjct: 758 AKNPCLHPGDIRVLQAVDVPSLHHMFDCVVFPQQGPR 794
>gi|40794967|gb|AAR91037.1| RNA-directed RNA polymerase 2 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/695 (58%), Positives = 518/695 (74%), Gaps = 20/695 (2%)
Query: 4 FAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQ 63
+VLW G V+V FGF M+KI+F L++ ++Y+LEL YE+IWEI+L+ P K+LLIQ
Sbjct: 117 LSVLWSGTGVSVEFGFAMKKIDFCLTYNLKKYKLELSYESIWEIQLYHPPGSQKKFLLIQ 176
Query: 64 LLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYR 123
++ AP+I+++ + +Y+ P+FN+F++ DDQW RTTDFTP IGQS LC+ELP
Sbjct: 177 VMAAPKIYEQNLWHSGSMYDDPLFNYFRDDTDDQWTRTTDFTPLASIGQSYILCLELPAD 236
Query: 124 LELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQN 183
LP+ +E F YYK F G +YS + VPIV +PYEILFKIN LVQN
Sbjct: 237 CYLPNIREYFVYYKNHNHDFHCMRGHSYSSNSCFVPIVKSQYFTDVPYEILFKINNLVQN 296
Query: 184 GCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSR 243
G ++GP LD NFY LV P V I I+HAL+ + +LK+ C P WL+++Y++ SR
Sbjct: 297 GILSGPTLDDNFYSLVSP--GYVCIDHIKHALENMSYLKKTCLNPINWLSEKYKEIQISR 354
Query: 244 SKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 302
+SP I+LDD GL YV+RVQ+TP++VYF GPEINVSNRV+R++ D++NFLRISF+DE
Sbjct: 355 HMLTSPNIALDDDGLAYVYRVQITPAKVYFYGPEINVSNRVVRNYSADLENFLRISFVDE 414
Query: 303 DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 362
D +K+ STDLSPR + + +RT +Y RILS L NGI IG++ FEFLAFSSSQLR++SAW
Sbjct: 415 DCEKLRSTDLSPRSAPGNNASRTALYNRILSVLSNGITIGNKHFEFLAFSSSQLRDNSAW 474
Query: 363 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 422
MFASR GL+A++IREWMGNFR IRNVAKYAARLGQSFS+S ETL VH E++ +P+V
Sbjct: 475 MFASRTGLSASDIREWMGNFRNIRNVAKYAARLGQSFSASTETLKVHKYEVQALPEV--- 531
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 482
TKYVFSDGIG +SA+FA +V+ KC L PSAFQIRYGGYKGVVA DP S KLSL
Sbjct: 532 TNGTKYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYKGVVAIDPRSHWKLSL 591
Query: 483 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 542
R SM K+ SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D IFE KQ+ AV QL+ ++
Sbjct: 592 RSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIFELKQQAAVMQLNRLV 651
Query: 543 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
T+P A +A+ELM GE TN++KELL+CGY+PD EP+LSM+LQTFRASKLLEL+TK+RIF
Sbjct: 652 TEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTFRASKLLELKTKSRIF 711
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
IP GR+MMGCLDETRTL YG+VF+Q S +S+ +F+V G VVVAK
Sbjct: 712 IPEGRAMMGCLDETRTLKYGEVFIQAS--------------NSANESDKFVVTGKVVVAK 757
Query: 663 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
NPCLHPGD+R+L+AV P L HMV+CVVFPQ+G R
Sbjct: 758 NPCLHPGDIRILEAVYTPVLDHMVNCVVFPQQGPR 792
>gi|40794965|gb|AAR91036.1| RNA-directed RNA polymerase 1 [Hordeum vulgare subsp. vulgare]
Length = 1115
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/695 (59%), Positives = 524/695 (75%), Gaps = 21/695 (3%)
Query: 4 FAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQ 63
+VLW G +V+V FGF M++I+F L + ++Y+LEL YE+IWEI+LH P K+LLIQ
Sbjct: 117 LSVLWSGTDVSVEFGFAMKRIDFCLIYNSKKYKLELSYESIWEIQLHRPPGLQKKFLLIQ 176
Query: 64 LLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYR 123
+ AP+I+++ IR +Y+ P+FN+F++ DDQW RTTDFTPS IGQS L +ELP+
Sbjct: 177 VQAAPKIYEQNIRLSGSMYDDPLFNYFRDDTDDQWTRTTDFTPSASIGQSYILSLELPHI 236
Query: 124 LELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQN 183
LP+ +E F YY+ D F L+ G +YS + VP+V +PYEILFKIN LVQN
Sbjct: 237 CYLPNIREYFVYYEVHNDIFNLQPGYSYSSNTCFVPVVKSHYFTDVPYEILFKINHLVQN 296
Query: 184 GCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSR 243
G ++GP LD NFYRLV P I I+ AL+K+ +LK+ C P+ WL++QY+K SR
Sbjct: 297 GTLSGPTLDDNFYRLVSP--GYERIDRIKRALEKMSYLKKTCLNPTNWLSEQYKKMRRSR 354
Query: 244 SKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 302
+SP I+LDD GLVYV+RVQ+TP++VYF GPEINVSNRV+R++ D+DNFLRISF+DE
Sbjct: 355 VL-TSPNITLDDDGLVYVYRVQITPAKVYFYGPEINVSNRVVRNYAADLDNFLRISFVDE 413
Query: 303 DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 362
D +K+ STDLS R + + RT +Y R+LS L NGI IGD+ F+FLAFSSSQLR++SAW
Sbjct: 414 DCEKLRSTDLSQRSAPGNNTRRTALYNRVLSVLSNGITIGDKHFDFLAFSSSQLRDNSAW 473
Query: 363 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 422
MFASR GL+A++IREWMGNFR IRNVAKYAARLGQSFSSS ETL VH E++ PDV
Sbjct: 474 MFASRPGLSASDIREWMGNFRNIRNVAKYAARLGQSFSSSTETLKVHKYEVKEAPDV--- 530
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 482
T+YVFSDGIG +SA+FA +V+ KC L PSAFQIRYGGYKGVVA DPTS KLSL
Sbjct: 531 TNGTEYVFSDGIGTISADFADEVSKKCNLTRFTPSAFQIRYGGYKGVVAIDPTSQWKLSL 590
Query: 483 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 542
R SM K++S+ LDVLA+SKYQPCFLNRQLI+LLSTLG+ D IFE KQ+EAV+QL+ ++
Sbjct: 591 RKSMSKFQSDNITLDVLAYSKYQPCFLNRQLITLLSTLGVIDSIFELKQQEAVQQLNRMV 650
Query: 543 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
+P A +A+ELM GE TNI+KELL+CGY+PD EP++SM+LQTFRASKLLEL+T++RIF
Sbjct: 651 AEPQAAIDAIELMPMGEITNIVKELLLCGYRPDVEPYVSMLLQTFRASKLLELKTRSRIF 710
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
+P GR+MMGCLDETRTL YGQVF+Q S +S+ R + +V G V+VAK
Sbjct: 711 VPKGRAMMGCLDETRTLKYGQVFIQAS--------------NSADDRGKSVVTGKVIVAK 756
Query: 663 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
NPC+HPGD+R+L+AV+ P L HMV+CVVFPQ G R
Sbjct: 757 NPCIHPGDIRILQAVHSPLLGHMVNCVVFPQLGPR 791
>gi|307135834|gb|ADN33705.1| RNA-dependent RNA polymerase [Cucumis melo subsp. melo]
Length = 1137
Score = 805 bits (2078), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/716 (58%), Positives = 511/716 (71%), Gaps = 43/716 (6%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
K V+W G V FG G+RK+ F LS+ ++Y++EL +ENI +E CP Q +K+ LI
Sbjct: 115 KMRVIWEGEKWNVEFGNGVRKLWFYLSYEVDDYKMELCFENILSVEFRCPLNQPSKFFLI 174
Query: 63 QLLG---------------------APRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRT 101
Q+ APRIF+K S S N F+ W+R
Sbjct: 175 QVSSFFLSFFSFFLSFLSLLKLQCRAPRIFRKTPSSSSSPLYSNESNSFR------WIRD 228
Query: 102 TDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIV 161
DFTPS+ IGQS LC++ LP F + YK + D F+L GS++ + +LVPI+
Sbjct: 229 VDFTPSSCIGQSFTLCLQFSPSHHLPPFFQTLVGYKVTYDPFILRKGSSFVSNSNLVPII 288
Query: 162 GPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHL 221
PP + Y+ILFKIN L+Q G ++GP LD F+RLVD R IEHAL+KL++L
Sbjct: 289 TPPQAFDISYKILFKINALLQRGYLSGPTLDDEFFRLVDSSR--FHPDYIEHALEKLFNL 346
Query: 222 KECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 281
KECCY+P +WL DQY Y S P P +SLDDGLVYVHRVQ+TP +VYFCGPE N+SN
Sbjct: 347 KECCYKPQKWLKDQYLSYYVSNQLPWKPNVSLDDGLVYVHRVQITPLKVYFCGPEANLSN 406
Query: 282 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILI 341
RV+R F DIDNFLR+SF+DE+LDK+HS DL+PR SS + TRTR+Y R++S L+NGI+I
Sbjct: 407 RVVRRFIDDIDNFLRVSFVDEELDKLHSIDLAPRSSSPENNTRTRVYDRVVSVLKNGIVI 466
Query: 342 GDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSS 401
GD+KFEFLAFS+SQLRE+S WMFASR GL+AA+IREWMG+FR+IRNVAKYAARLGQSF S
Sbjct: 467 GDKKFEFLAFSASQLRENSFWMFASRKGLSAADIREWMGDFRQIRNVAKYAARLGQSFGS 526
Query: 402 SKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQI 461
S++TL V EIE+IPDV++E Y FSDGIGK+S A+KVA KCGL + PSAFQI
Sbjct: 527 SRKTLCVKEHEIEVIPDVEVERKNIMYCFSDGIGKISKTLAKKVAKKCGLTGHTPSAFQI 586
Query: 462 RYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
RY GYKGVVA DPTS KKLSLR SM KY S T+LDVL WSKYQPCFLNRQ+I+LLSTLG
Sbjct: 587 RYAGYKGVVAIDPTSEKKLSLRKSMLKYMSLDTQLDVLLWSKYQPCFLNRQVINLLSTLG 646
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS 581
I D++F KKQ+EA+ QLD+IL DP +A E LELMSPGE T+ILKELL Y P+ EPFL+
Sbjct: 647 IGDDVFVKKQKEAIDQLDSILEDPSRALEVLELMSPGEMTSILKELL-SFYMPNEEPFLN 705
Query: 582 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS 641
MML TFRA+KLL+L+TK+RIF+P GR+MMGCLDETRTL YGQVFV S G
Sbjct: 706 MMLWTFRANKLLDLKTKSRIFVPRGRTMMGCLDETRTLEYGQVFVHCSVPG--------- 756
Query: 642 LFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
S F+V+G VVVAKNPCLHPGDVR+L A++V ALHHMVDCVVFPQKG R
Sbjct: 757 ----RSSEGNFVVKGKVVVAKNPCLHPGDVRLLDAIDVKALHHMVDCVVFPQKGKR 808
>gi|308080205|ref|NP_001183933.1| putative RNA-dependent RNA polymerase [Zea mays]
gi|254838301|gb|ACT83377.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 1108
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 416/697 (59%), Positives = 511/697 (73%), Gaps = 22/697 (3%)
Query: 4 FAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRW--QMTKYLL 61
+ L+R NV+V FGF M+KI F LS+ +++LEL YE+IWE++LH P T++LL
Sbjct: 117 LSALFRASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWEMQLHRPPAYRSRTQFLL 176
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQ+ AP+I++ P L++E P FN+F++ D+QW RT DFTPS IGQS+
Sbjct: 177 IQVQAAPKIYKLLPGRPGLMFEDPFFNWFRDEKDEQWTRTIDFTPSASIGQSSIYVWRCQ 236
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
+ ELP + F YYKE F G +YS LVPIV PD I +PYEILFKIN LV
Sbjct: 237 QQCELPRIGDYFVYYKEQNLDFECRNGYSYSCGSSLVPIVKSPDYIEVPYEILFKINHLV 296
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
QNG ++G +D +F+R V P P I I+ AL K+ +LK C P+ WL+ QY +
Sbjct: 297 QNGTLSGSTVDHSFFRHVSPKFEP--IDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIRK 354
Query: 242 SRSKPSSPA-ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
SR + ISLDDGLVYVHRVQVTP++VYF GPEINVSNRV+RHF DIDNFLRISF+
Sbjct: 355 SRHASQKLSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISFV 414
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DED +K+ S DLSPR +S D RT +Y R+LS L NGI IGD+ FEFLAFSSSQLR++S
Sbjct: 415 DEDCEKLRSADLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDNS 474
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
AWMFASR GLTA++IR+WMG+FR+IRNVAKYAA LGQSFSSS ETL VH E+E IPD+
Sbjct: 475 AWMFASRQGLTASDIRKWMGDFRDIRNVAKYAAILGQSFSSSTETLKVHKSEVERIPDI- 533
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
TKY+FSDG+GK+SA FA +VA KC LK PS FQIRYGGYKGVVA D S+ KL
Sbjct: 534 --TNGTKYIFSDGVGKISANFAVEVAMKCKLKRFAPSVFQIRYGGYKGVVAVDTRSNHKL 591
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM K++SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D +FE KQ+EA+RQL+
Sbjct: 592 SLRKSMSKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFELKQKEALRQLNR 651
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
++T+P A+EA+ELM GE TN++KELL CGY+PD EP+LSM+LQTFRASKLLEL+TK+R
Sbjct: 652 MVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKSR 711
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
IFI GR+MMGCLDET TL YGQVFVQ S S+ ++ +V G VVV
Sbjct: 712 IFITQGRAMMGCLDETCTLKYGQVFVQAS--------------YSADDHRKVVVTGKVVV 757
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
AKNPCLHPGD+RVL+AV+VPALHH+ DCVVFPQ+G R
Sbjct: 758 AKNPCLHPGDIRVLQAVDVPALHHLFDCVVFPQQGPR 794
>gi|413938756|gb|AFW73307.1| putative RNA-dependent RNA polymerase [Zea mays]
Length = 933
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/638 (61%), Positives = 479/638 (75%), Gaps = 20/638 (3%)
Query: 61 LIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMEL 120
+ Q+ AP+I++ P L++E P FN+F++ D+QW RT DFTPS IGQS+ LC+E+
Sbjct: 1 MFQVQAAPKIYKLLPGRPGLMFEDPFFNWFRDDTDEQWTRTIDFTPSASIGQSSILCLEV 60
Query: 121 PYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLL 180
P + ELP + F YYKE F G +YS +LVPIV PD I +PYEILFKIN L
Sbjct: 61 PQQCELPRIGDYFVYYKEQNLDFECRNGYSYSCGSNLVPIVKSPDYIEVPYEILFKINHL 120
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQNG ++GP +D +F+R V P P I I+ AL K+ +LK C P+ WL+ QY +
Sbjct: 121 VQNGTLSGPTVDHSFFRHVSPKFEP--IDHIKRALLKMTYLKSTCLNPTDWLSVQYSRIR 178
Query: 241 TSRSKPSSPA-ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
SR + ISLDDGLVYVHRVQVTP++VYF GPEINVSNRV+RHF DIDNFLRISF
Sbjct: 179 KSRHASQKLSNISLDDGLVYVHRVQVTPAKVYFYGPEINVSNRVVRHFSADIDNFLRISF 238
Query: 300 IDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRES 359
+DED +K+ S DLSPR +S D RT +Y R+LS L NGI IGD+ FEFLAFSSSQLR++
Sbjct: 239 VDEDCEKLRSADLSPRSTSGNDARRTALYNRVLSVLSNGINIGDKHFEFLAFSSSQLRDN 298
Query: 360 SAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 419
SAWMFASR GLTA++IR+WMG+FR+IRNVAKYAARLGQSFSSS ETL VH E+E IPD+
Sbjct: 299 SAWMFASRQGLTASDIRKWMGDFRDIRNVAKYAARLGQSFSSSTETLKVHKSEVERIPDI 358
Query: 420 KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 479
TKY+FSDG+GK+SA FA +VA KC LK PS FQIRYGGYKGVVA D S+ K
Sbjct: 359 ---TNGTKYIFSDGVGKISANFAVEVAMKCKLKRFAPSVFQIRYGGYKGVVAVDTRSNHK 415
Query: 480 LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
LSLR SM K++SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D +FE KQ+EA+RQL+
Sbjct: 416 LSLRKSMSKFQSENITLDVLAYSKYQPCFLNRQLITLLSTLGVSDNVFELKQKEALRQLN 475
Query: 540 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
++T+P A+EA+ELM GE TN++KELL CGY+PD EP+LSM+LQTFRASKLLEL+TK+
Sbjct: 476 RMVTEPQAAREAVELMPMGEVTNVVKELLSCGYQPDHEPYLSMLLQTFRASKLLELKTKS 535
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
RIFI GR+MMGCLDET TL YGQVFVQ S S+ ++ +V G VV
Sbjct: 536 RIFITQGRAMMGCLDETCTLKYGQVFVQAS--------------YSADDHRKVVVTGKVV 581
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
VAKNPCLHPGD+RVL+AV+VPALHH+ DCVVFPQ+G R
Sbjct: 582 VAKNPCLHPGDIRVLQAVDVPALHHLFDCVVFPQQGPR 619
>gi|125541045|gb|EAY87440.1| hypothetical protein OsI_08849 [Oryza sativa Indica Group]
Length = 1067
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/631 (59%), Positives = 470/631 (74%), Gaps = 10/631 (1%)
Query: 4 FAVLWRGVNVTVNFGFGMRKINFLLS--HLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+ LW V+V FGF ++KI F L + EY+LEL YE+IWEI+L P TK+LL
Sbjct: 117 LSALWSRTGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSYESIWEIQLQRPPKSQTKFLL 176
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQ+ AP+I+++ R ++YE P+FN+F++ DDQW RTTDFT S+ IGQS LC+E+P
Sbjct: 177 IQVQAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVP 236
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGS-AYSRSLDLVPIVGPPDGIALPYEILFKINLL 180
R +LP+ ++ F YY E F +G YS VPIV + PYEILFKIN L
Sbjct: 237 RRCDLPNIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPIVKSRGYV--PYEILFKINHL 294
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQNG ++GP +D +F+RLV P A V I I+ AL+ + +LK+ C P+ WL++QY K+
Sbjct: 295 VQNGTLSGPTVDDSFFRLVSP--AFVPIDHIKRALEMMSYLKKTCLNPTSWLSEQYSKFR 352
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
SR SP ISLDDGLVYV+RVQVTP++VYF GPEINVSNRV+R+F DI+NFLRISF+
Sbjct: 353 RSRYVQPSPNISLDDGLVYVYRVQVTPAKVYFYGPEINVSNRVVRNFSSDIENFLRISFV 412
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DED +K+ +TDLSPR +S D RT +Y R+L L +GI IG + FEFLAFSSSQLR++S
Sbjct: 413 DEDCEKLRATDLSPRSASGHDANRTALYKRVLLVLSDGITIGGKNFEFLAFSSSQLRDNS 472
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
AWMFASR GL A++IR WMG+FR IRNVAKYAARLGQSFSSS ETL V E+E I D+K
Sbjct: 473 AWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVEEISDIK 532
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
T++VFSDGIGK+S+ FA +VA KC LK PSAFQIRYGGYKGVVA DPTS KL
Sbjct: 533 ---NGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKL 589
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM K++S+ +DVLA+SKYQP FLNRQLI+LLSTLG+ D +FE+KQ EAV QL+
Sbjct: 590 SLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNK 649
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
++TDP A EA+ELM GE TN +KELL+CGY+PD EP+LSM+LQTFRASKLLEL+TK+R
Sbjct: 650 MVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSR 709
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGA 631
I IP GR+MMGCLDETRTL YGQVF++ +
Sbjct: 710 ILIPKGRAMMGCLDETRTLKYGQVFIRATSG 740
>gi|4138343|emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
Length = 775
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/489 (72%), Positives = 412/489 (84%), Gaps = 6/489 (1%)
Query: 210 CIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSR 269
CIEHAL+KLY+LKECCY+P RWLT QY +Y+ R P SP+I+LDDGL+YV RV VTP +
Sbjct: 1 CIEHALEKLYNLKECCYDPVRWLTKQYDEYLKRRQLPKSPSITLDDGLMYVRRVLVTPCK 60
Query: 270 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 329
VYF GPE+NVSNRVLR++ DIDNFLR+SF+DE+ +KI S DL PR + + RT IY
Sbjct: 61 VYFLGPEVNVSNRVLRNYSEDIDNFLRVSFVDEEWEKIFSMDLLPRANR--NGIRTDIYE 118
Query: 330 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVA 389
RILSTL+NG++IG +KFEFLAFSSSQLR++S WMFASR GLTA +IR WMG+F++IRNVA
Sbjct: 119 RILSTLQNGLVIGAKKFEFLAFSSSQLRDNSVWMFASRPGLTAYDIRTWMGDFQQIRNVA 178
Query: 390 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 449
KYAARLGQSF SS+ETLSV EI+ IPDV E+ T YVFSDGIGK+SA+FA +VA KC
Sbjct: 179 KYAARLGQSFGSSRETLSVGRHEIKYIPDV--EVHGTNYVFSDGIGKISADFAHRVAKKC 236
Query: 450 GLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFL 509
GL+ + PSAFQIRYGGYKGVVA DP S KLSLR SM KYES TKLDVL WSKYQPC+L
Sbjct: 237 GLQ-HTPSAFQIRYGGYKGVVAVDPYSPMKLSLRKSMLKYESNNTKLDVLGWSKYQPCYL 295
Query: 510 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLI 569
NRQL++L+STLG+ DE+F++KQ EAV QLDAIL D LKAQEAL+LMSPGENTNILKE+L
Sbjct: 296 NRQLVTLMSTLGVKDEVFKRKQNEAVAQLDAILHDSLKAQEALDLMSPGENTNILKEMLN 355
Query: 570 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 629
CGY PDAEPFLSMMLQTFRASKLL+LRT+TRIFIP GRSMMGCLDE+RTL YGQVFVQ +
Sbjct: 356 CGYLPDAEPFLSMMLQTFRASKLLDLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQFT 415
Query: 630 GAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 688
GAG RQ + ES F+ S S FI++G VVVAKNPCLHPGD+RVLKAV+VPALHHMVDC
Sbjct: 416 GAGGRQFYEESHHFNDSGSANYNFILKGNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDC 475
Query: 689 VVFPQKGMR 697
VVFPQKG R
Sbjct: 476 VVFPQKGKR 484
>gi|222623633|gb|EEE57765.1| hypothetical protein OsJ_08301 [Oryza sativa Japonica Group]
Length = 1027
Score = 675 bits (1741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 350/631 (55%), Positives = 440/631 (69%), Gaps = 50/631 (7%)
Query: 4 FAVLWRGVNVTVNFGFGMRKINFLLS--HLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
+ LW V+V FGF ++KI F L + EY+LEL +E+IWEI+L P TK+LL
Sbjct: 117 LSALWSRKGVSVEFGFNLKKIYFYLQLPNSSIEYKLELSHESIWEIQLQRPPKSQTKFLL 176
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
IQ+ AP+I+++ R ++YE P+FN+F++ DDQW RTTDFT S+ IGQS LC+E+P
Sbjct: 177 IQVQAAPKIYEQTPRRSGVMYEDPLFNYFRDHTDDQWTRTTDFTSSSSIGQSYILCLEVP 236
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGS-AYSRSLDLVPIVGPPDGIALPYEILFKINLL 180
R +LP+ ++ F YY E F +G YS VPIV + PYEILFKIN L
Sbjct: 237 RRCDLPNIRDYFFYYHEYNHDFECRSGGYPYSSDTRFVPIVKSRGYV--PYEILFKINHL 294
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
VQNG ++GP +D +F+RLV P A V I I+ AL+ + +LK+ C P+
Sbjct: 295 VQNGTLSGPTVDDSFFRLVSP--AFVPIDHIKRALEMMSYLKKTCLNPT----------- 341
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
+YF GPEINVSNRV+R+F DI+NFLRISF+
Sbjct: 342 -----------------------------MYFYGPEINVSNRVVRNFSSDIENFLRISFV 372
Query: 301 DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
DED +K+ +TDLSPR +S D RT +Y R+LS L +GI IG + FEFLAFSSSQLR++S
Sbjct: 373 DEDCEKLRATDLSPRSASGHDANRTALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNS 432
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
AWMFASR GL A++IR WMG+FR IRNVAKYAARLGQSFSSS ETL V E+E I D+K
Sbjct: 433 AWMFASRQGLAASDIRTWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVEEISDIK 492
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL 480
T++VFSDGIGK+S+ FA +VA KC LK PSAFQIRYGGYKGVVA DPTS KL
Sbjct: 493 ---NGTQHVFSDGIGKISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKL 549
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
SLR SM K++S+ +DVLA+SKYQP FLNRQLI+LLSTLG+ D +FE+KQ EAV QL+
Sbjct: 550 SLRKSMLKFQSDNITVDVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNK 609
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
++TDP A EA+ELM GE TN +KELL+CGY+PD EP+LSM+LQTFRASKLLEL+TK+R
Sbjct: 610 MVTDPQAAIEAIELMPMGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSR 669
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGA 631
I IP GR+MMGCLDETRTL YGQVF++ +
Sbjct: 670 ILIPKGRAMMGCLDETRTLKYGQVFIRATSG 700
>gi|297737620|emb|CBI26821.3| unnamed protein product [Vitis vinifera]
Length = 943
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 309/487 (63%), Positives = 381/487 (78%), Gaps = 25/487 (5%)
Query: 13 VTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQ 72
+T++FG+ M F LS ENIW+I+L PR Q TK+LLIQLL AP+I++
Sbjct: 99 ITLHFGYQMSNERFCLS-----------CENIWQIQLREPRGQNTKFLLIQLLDAPQIYE 147
Query: 73 KGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKEN 132
K + + ++FKE PDDQWVR DFTPS IGQS+ LC+ELP+ +LP+F EN
Sbjct: 148 KDVSA---------LSYFKETPDDQWVREIDFTPSCSIGQSSALCLELPHGSQLPNFCEN 198
Query: 133 FAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLD 192
FA YKE++ +F+LE+G+++S +L LVPIVGPP G LP++ILFKIN LVQNGC++GP LD
Sbjct: 199 FARYKENDRKFILESGASFSGNLHLVPIVGPPQGSNLPFKILFKINTLVQNGCLSGPTLD 258
Query: 193 SNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAIS 252
+NF+R VDP R ++IS IEHAL+KLY+L+ECCYEP RWL +QYR Y+ S+ SPAIS
Sbjct: 259 TNFFRWVDPQR--INISFIEHALEKLYYLEECCYEPVRWLHEQYRTYI-SKQVAGSPAIS 315
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
LD GLVYV RVQ+TP +VYFCGPE+NVSNRVLR++ DIDNFLR+SF+DE+ +KIHST +
Sbjct: 316 LDTGLVYVRRVQITPCKVYFCGPEVNVSNRVLRNYPEDIDNFLRVSFLDENSEKIHSTVI 375
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 372
SPR S+ + RT +Y RILS L+NGI+IGD+KF+FLA SSSQLR++SAWMFASR GLTA
Sbjct: 376 SPRMSN--EGRRTGVYRRILSILQNGIVIGDKKFDFLAVSSSQLRDNSAWMFASRPGLTA 433
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 432
A+IR MG+F +IRNVAKYAARLGQSFSSSKETL V EIEIIPD++ T YVFSD
Sbjct: 434 ADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIETHRDGTTYVFSD 493
Query: 433 GIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESE 492
GIGK+SAE A +VA KCG K++ PSAFQIRYGGYKGVVA DPTSS+KLSLR SM KYESE
Sbjct: 494 GIGKISAELAHRVAIKCGCKNSTPSAFQIRYGGYKGVVAVDPTSSRKLSLRKSMFKYESE 553
Query: 493 LTKLDVL 499
T LD+L
Sbjct: 554 NTNLDLL 560
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 60/106 (56%), Gaps = 38/106 (35%)
Query: 592 LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR 651
LLELRTKTRIF+PNG S
Sbjct: 559 LLELRTKTRIFVPNG--------------------------------------SGSHHDN 580
Query: 652 FIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
FI++G VVVAKNPCLHPGDVR+L AV+VPALHHMVDCVVFPQKGMR
Sbjct: 581 FILEGKVVVAKNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMR 626
>gi|115448543|ref|NP_001048051.1| Os02g0736200 [Oryza sativa Japonica Group]
gi|113537582|dbj|BAF09965.1| Os02g0736200, partial [Oryza sativa Japonica Group]
Length = 476
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 284/441 (64%), Positives = 340/441 (77%), Gaps = 17/441 (3%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
L Y+ + S VYF GPEINVSNRV+R+F DI+NFLRISF+DED +K+ +TDLSPR
Sbjct: 23 LTYLWMMDWFMSTVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRS 82
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
+S D RT +Y R+LS L +GI IG + FEFLAFSSSQLR++SAWMFASR GL A++IR
Sbjct: 83 ASGHDANRTALYKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIR 142
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
WMG+FR IRNVAKYAARLGQSFSSS ETL V E+E I D+K T++VFSDGIGK
Sbjct: 143 TWMGDFRNIRNVAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGK 199
Query: 437 VSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKL 496
+S+ FA +VA KC LK PSAFQIRYGGYKGVVA DPTS KLSLR SM K++S+ +
Sbjct: 200 ISSAFANEVAMKCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITV 259
Query: 497 DVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS 556
DVLA+SKYQP FLNRQLI+LLSTLG+ D +FE+KQ EAV QL+ ++TDP A EA+ELM
Sbjct: 260 DVLAYSKYQPGFLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMP 319
Query: 557 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 616
GE TN +KELL+CGY+PD EP+LSM+LQTFRASKLLEL+TK+RI IP GR+MMGCLDET
Sbjct: 320 MGEITNAVKELLLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDET 379
Query: 617 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 676
RTL YGQVF++ + S RF V G VV+AKNPCLHPGD+R+L A
Sbjct: 380 RTLKYGQVFIRAT--------------SGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHA 425
Query: 677 VNVPALHHMVDCVVFPQKGMR 697
V+VP LHHM +CVVFPQ+G R
Sbjct: 426 VDVPVLHHMFNCVVFPQQGPR 446
>gi|251765121|sp|Q0DXS3.2|RDR1_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 1; Short=OsRDR1
Length = 740
Score = 572 bits (1474), Expect = e-160, Method: Compositional matrix adjust.
Identities = 282/430 (65%), Positives = 336/430 (78%), Gaps = 17/430 (3%)
Query: 268 SRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 327
S VYF GPEINVSNRV+R+F DI+NFLRISF+DED +K+ +TDLSPR +S D RT +
Sbjct: 7 STVYFYGPEINVSNRVVRNFSSDIENFLRISFVDEDCEKLRATDLSPRSASGHDANRTAL 66
Query: 328 YTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRN 387
Y R+LS L +GI IG + FEFLAFSSSQLR++SAWMFASR GL A++IR WMG+FR IRN
Sbjct: 67 YKRVLSVLSDGITIGGKNFEFLAFSSSQLRDNSAWMFASRQGLAASDIRTWMGDFRNIRN 126
Query: 388 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
VAKYAARLGQSFSSS ETL V E+E I D+K T++VFSDGIGK+S+ FA +VA
Sbjct: 127 VAKYAARLGQSFSSSTETLKVQKYEVEEISDIK---NGTQHVFSDGIGKISSAFANEVAM 183
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPC 507
KC LK PSAFQIRYGGYKGVVA DPTS KLSLR SM K++S+ +DVLA+SKYQP
Sbjct: 184 KCNLKRFAPSAFQIRYGGYKGVVAVDPTSRWKLSLRKSMLKFQSDNITVDVLAYSKYQPG 243
Query: 508 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 567
FLNRQLI+LLSTLG+ D +FE+KQ EAV QL+ ++TDP A EA+ELM GE TN +KEL
Sbjct: 244 FLNRQLITLLSTLGVRDSVFEQKQEEAVNQLNKMVTDPQAAIEAIELMPMGEITNAVKEL 303
Query: 568 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 627
L+CGY+PD EP+LSM+LQTFRASKLLEL+TK+RI IP GR+MMGCLDETRTL YGQVF++
Sbjct: 304 LLCGYQPDDEPYLSMLLQTFRASKLLELKTKSRILIPKGRAMMGCLDETRTLKYGQVFIR 363
Query: 628 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 687
+ S RF V G VV+AKNPCLHPGD+R+L AV+VP LHHM +
Sbjct: 364 AT--------------SGVNDNDRFTVTGKVVIAKNPCLHPGDIRILHAVDVPVLHHMFN 409
Query: 688 CVVFPQKGMR 697
CVVFPQ+G R
Sbjct: 410 CVVFPQQGPR 419
>gi|297737619|emb|CBI26820.3| unnamed protein product [Vitis vinifera]
Length = 919
Score = 553 bits (1424), Expect = e-154, Method: Compositional matrix adjust.
Identities = 285/457 (62%), Positives = 345/457 (75%), Gaps = 47/457 (10%)
Query: 44 IWE-IELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTT 102
+W+ I + PR Q+TK+LLIQLLGAP+I++K + P L Y +FKE PDDQWVR
Sbjct: 116 LWKAINVSHPRGQITKFLLIQLLGAPQIYEKDV--PVLSY------YFKEAPDDQWVREI 167
Query: 103 DFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVG 162
DFTPS FIGQS LC+ELPY +LP+F+ENFAYYKE++ +F+LE+GS+YS +L LVPI+G
Sbjct: 168 DFTPSCFIGQSFALCLELPYGSQLPNFRENFAYYKENDGKFILESGSSYSHNLHLVPILG 227
Query: 163 PPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK 222
PP G +LP++ILFKIN LVQNGC++GP LD++F+RLVDP R P+S IEHAL+KLYHLK
Sbjct: 228 PPQGSSLPFQILFKINTLVQNGCLSGPTLDTSFFRLVDPERFPISF--IEHALEKLYHLK 285
Query: 223 ECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 282
ECCYEP RWL++QYR Y+ + SPAISLD GLVYV RVQ+TP
Sbjct: 286 ECCYEPVRWLSEQYRTYV-KKPVAGSPAISLDTGLVYVRRVQITPY-------------- 330
Query: 283 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIG 342
E+L+KIHST +SPR S + RT +Y RILS L+NGI+IG
Sbjct: 331 -------------------ENLEKIHSTVISPRMSK--EGRRTGVYRRILSILQNGIVIG 369
Query: 343 DRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSS 402
D+KF+FLAFSSSQLR++SAWMFASR GLTAAEIR WMG+F +IRNVAKYAARLGQSFSSS
Sbjct: 370 DKKFDFLAFSSSQLRDNSAWMFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSS 429
Query: 403 KETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR 462
KETL V DEIE IPD++I G+T YVFSDGIGK+S + A +VA KCG K + PSAFQIR
Sbjct: 430 KETLKVAKDEIENIPDIEIHKGRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIR 489
Query: 463 YGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVL 499
YGGYKGVVA DPTSS+KLSLR SM KYES+ T LD+L
Sbjct: 490 YGGYKGVVAVDPTSSRKLSLRKSMFKYESDNTNLDLL 526
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 58/106 (54%), Gaps = 38/106 (35%)
Query: 592 LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR 651
LLELRTKTRIF+PNG S
Sbjct: 525 LLELRTKTRIFVPNG--------------------------------------SGSHHDN 546
Query: 652 FIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
FI++G +VVAKNPCLHPGDVRVL AVNVP LHHMVDCVVFPQKG R
Sbjct: 547 FILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKR 592
>gi|147853646|emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
Length = 654
Score = 536 bits (1382), Expect = e-149, Method: Compositional matrix adjust.
Identities = 262/336 (77%), Positives = 288/336 (85%), Gaps = 1/336 (0%)
Query: 363 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 422
MFASR GLTAAEIR WMG+F +IRNVAKYAARLGQSFSSSKETL V DEIE IPD++I
Sbjct: 1 MFASRPGLTAAEIRSWMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKDEIENIPDIEIH 60
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 482
+T YVFSDGIGK+S + A +VA KCG K + PSAFQIRYGGYKGVVA DPTSS+KLSL
Sbjct: 61 KXRTTYVFSDGIGKISPQLAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120
Query: 483 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 542
R SM KYES+ T LDVLAWSKYQP FLNRQLI+LLSTLG+ D +FEKKQR AV QLD IL
Sbjct: 121 RKSMFKYESDNTNLDVLAWSKYQPSFLNRQLITLLSTLGVKDHVFEKKQRAAVDQLDTIL 180
Query: 543 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
DP+ AQEALELMSPGENTN+LKE+L+CGYKPDAEPFLSMMLQTFRA+KLLELRTKTRIF
Sbjct: 181 KDPVAAQEALELMSPGENTNVLKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVVA 661
+PNGRSMMGCLDETRTL YG+VFVQISG G RQ G+S +F S S FI++G +VVA
Sbjct: 241 VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNFILEGKIVVA 300
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
KNPCLHPGDVRVL AVNVP LHHMVDCVVFPQKG R
Sbjct: 301 KNPCLHPGDVRVLXAVNVPTLHHMVDCVVFPQKGKR 336
>gi|225457089|ref|XP_002280099.1| PREDICTED: RNA-dependent RNA polymerase 2 [Vitis vinifera]
gi|297733815|emb|CBI15062.3| unnamed protein product [Vitis vinifera]
Length = 1127
Score = 526 bits (1356), Expect = e-146, Method: Compositional matrix adjust.
Identities = 296/698 (42%), Positives = 422/698 (60%), Gaps = 18/698 (2%)
Query: 8 WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 67
W GV V ++ F + GE Y+LE+ ++++ E C LL++L A
Sbjct: 125 WEGVKTLVMPE--RNRVEFWVDKDGERYKLEVPFDDVLESSACCLGGGKVNALLLKLKYA 182
Query: 68 PRIFQKGIRSPDLL--YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE 125
P+IFQK P++ + + ++ KE + W+RTTDF+ +GQST C E+
Sbjct: 183 PKIFQK-FAGPNIASKFSADRYHISKEDAEFLWLRTTDFSSIKSLGQSTSFCWEIKEGFP 241
Query: 126 LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGC 185
D +F YYK+ + LE G + LVP+V G L YEILF++N LV
Sbjct: 242 ALDIFASFPYYKDLTE-LTLEQGEGFCSDSGLVPLVKCESGPKLAYEILFQLNSLVHAQK 300
Query: 186 VAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR--KYMTSR 243
++ +D++ ++ PV + + L KL+ K Y+P ++ Q
Sbjct: 301 ISLAAVDTDLIEILS--NLPVDTAIM--ILQKLHKRKSTRYDPISFIKAQAHIINMNIKN 356
Query: 244 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 303
PSS + ++ ++ HRV VTPS++Y GPE+ SN V++H+ +F+R+SF++ED
Sbjct: 357 LPPSSHSRLTNNNVMSCHRVLVTPSKIYCLGPELESSNYVVKHYAAYASDFVRVSFVEED 416
Query: 304 LDKIHSTDLSP--RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
K+ S LS R + D RT IY RILS LR GI+IG ++F+FLAFS+SQLR +S
Sbjct: 417 WSKLPSNALSMSIRKAFFADPFRTEIYHRILSILREGIVIGAKRFQFLAFSASQLRSNSV 476
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
WMFAS + +IREWMG F++IR+V+K AAR+GQ FSSS +TL V + ++E+IPD+++
Sbjct: 477 WMFASNDKVRVDDIREWMGCFKKIRSVSKCAARMGQLFSSSVQTLPVPVQDVEVIPDIEV 536
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS 481
Y FSDGIGK+S FA++VA KCGL P SAFQIRYGGYKGV+A D S +KLS
Sbjct: 537 TSDGFGYCFSDGIGKISLSFAKQVAQKCGLHQTP-SAFQIRYGGYKGVIAVDRNSFRKLS 595
Query: 482 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 541
LR SM K+ES+ L+V WS+ PC+LNR+++SLLSTLG+ DE FE E + LD +
Sbjct: 596 LRSSMLKFESQNRMLNVTKWSESTPCYLNREIVSLLSTLGVEDENFEALLNEQMHLLDKM 655
Query: 542 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
LT+ A + LE M +N NIL ++L+ GY+P+ EP+LSMMLQ +R S+L ++RT+ RI
Sbjct: 656 LTNRQAALDVLESMGGIDNKNILAKMLLQGYEPNVEPYLSMMLQAYRESQLSDIRTRCRI 715
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
F+P R ++GCLDET LNYGQV+V+++ S F ++ G V+V
Sbjct: 716 FVPKARVLIGCLDETGILNYGQVYVRVTMTKAEHKCRNQSFFQKVDDTTSVVI-GKVIVT 774
Query: 662 KNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMR 697
KNPCLHPGD+RVL AV L +VDC++FPQKG R
Sbjct: 775 KNPCLHPGDIRVLDAVYEVELEEKGLVDCILFPQKGER 812
>gi|242073398|ref|XP_002446635.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
gi|241937818|gb|EES10963.1| hypothetical protein SORBIDRAFT_06g019330 [Sorghum bicolor]
Length = 1128
Score = 523 bits (1347), Expect = e-145, Method: Compositional matrix adjust.
Identities = 290/700 (41%), Positives = 435/700 (62%), Gaps = 20/700 (2%)
Query: 5 AVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQL 64
A W GV V R+++ L Y+LE+ +E+I E C T +L+QL
Sbjct: 129 AYSWDGVRAEVIPR--KRRVDLYLKQDSRSYKLEVLFEDIREC-FGC-HLDGTGAILLQL 184
Query: 65 LGAPRIFQKGIRSP-DLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYR 123
APRI+ S + F+ KE WVR DFTP+N G+ + L ++L
Sbjct: 185 TYAPRIYTAISGSTVKSRFTDDRFHACKEDAKFAWVRALDFTPNNSFGECSTLVLKLSKG 244
Query: 124 LELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQN 183
+ + D E+ + E E+ + + A+ S ++VP+V P+G ++PYE+LF++N LV
Sbjct: 245 VPVSDILESLPFSGELEE-LAISSMLAFGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHM 303
Query: 184 GCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSR 243
G + ++++ +++++ +SI + +K+ LK CYEP +++ ++ + S+
Sbjct: 304 GKLVARHVNADLFKVLEE----LSIDTLRRIFEKMSKLKSTCYEPLQFI--RHEAHSMSK 357
Query: 244 SKPSSPAISLDDG-LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 302
SK + + D G L+ +R+ +TPS++Y GPE VSN V+++ +F R++F+DE
Sbjct: 358 SKKAFLSNKKDGGKLMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDE 417
Query: 303 DLDKIHSTDLSPRGSSATDIT--RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS 360
D K+ LS R T +T +Y RILS L+ G IG +K+EFLAFS+SQLR +S
Sbjct: 418 DWSKLSPNALSARTEQGFFSTPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNS 477
Query: 361 AWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
WMFAS LTA IR WMG+F +IR+V+K AAR+GQ FSSS++T + ++E+IPD++
Sbjct: 478 VWMFASNNSLTAESIRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEISSYDVEVIPDIE 537
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPTSSKK 479
+ TKY+FSDGIGK+S FAR++A GL +PPSAFQIRYGGYKGV+ DPTS
Sbjct: 538 VTSDGTKYIFSDGIGKISTRFARQIAKLFGLDPAHPPSAFQIRYGGYKGVITIDPTSFFN 597
Query: 480 LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
LSLR SM+K+ES+ T L++ WSK QPC++NR++ISLLSTLGI DE+FE Q++ + + D
Sbjct: 598 LSLRPSMKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESD 657
Query: 540 AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
+LT+ A L + G +T E+++ GY+P +EP+L M+L+ RA++L ++RT+
Sbjct: 658 GMLTNKEAALSVLGKIG-GADTKTASEMVLQGYEPSSEPYLLMILKAHRANRLTDIRTRC 716
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
+I + GR ++GCLDET TL+YGQV+++I+ Q + E F + + IV G V
Sbjct: 717 KIHVQKGRVLIGCLDETCTLDYGQVYIRITKNRKEQKYSEQPFFCNDDGKTAVIV-GKVA 775
Query: 660 VAKNPCLHPGDVRVLKAVNVPAL--HHMVDCVVFPQKGMR 697
V KNPCLHPGDVRVL+AV PAL ++DCVVFPQ+G R
Sbjct: 776 VTKNPCLHPGDVRVLEAVYDPALDARGLIDCVVFPQRGER 815
>gi|224133496|ref|XP_002321582.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222868578|gb|EEF05709.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1110
Score = 522 bits (1344), Expect = e-145, Method: Compositional matrix adjust.
Identities = 299/703 (42%), Positives = 435/703 (61%), Gaps = 34/703 (4%)
Query: 8 WRGVNVTVNFGFGM---RKINFLLSHLGEEYRLEL--DYENIWEIELHCPRWQMTKYLLI 62
W GV G+ M R+I F + +G+E+R +L ++E+I E + +++
Sbjct: 126 WEGVR-----GWFMPERRRIEFWI-RVGQEFRYKLVVEFEDILEAVGYPLDGDKVNAVVL 179
Query: 63 QLLGAPRIFQKGIRSPDLLYESPVFNFF--KEVPDDQWVRTTDFTPSNFIGQSTGLCMEL 120
+L PRI+QK I P + + +F KE D WVRTTD + IGQST C E+
Sbjct: 180 KLRYGPRIYQK-ISGPGIASKFSTNRYFYCKEDFDFLWVRTTDISAIKSIGQSTSFCWEI 238
Query: 121 PYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLL 180
LE D NF YY+E +R LE G + + + VP++ L YE+LF++N L
Sbjct: 239 GEGLEASDTFRNFPYYQEDMNRLDLEDGEEFCSASETVPLIRCGSD-KLAYEVLFQLNSL 297
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
V ++ +DS+ +++ +I L KL+ LK CY+P ++ R+ +
Sbjct: 298 VHTQKISLAAVDSDLIKILRNLTVNTAII----ILQKLHKLKMTCYDPLSFVKQSLRESL 353
Query: 241 TSRSKPSSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
SSP SL ++ ++ HR +TPS+++ GPE SN V++HF + +F+R++F
Sbjct: 354 ------SSPPKSLTENNIMSCHRALITPSKIFCLGPEYETSNYVVKHFAQYASDFIRVTF 407
Query: 300 IDEDLDKIHSTDLSP---RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 356
++ED K+ + +S RG A RT IY RILS LR+G +IG ++FEFLAFS+SQL
Sbjct: 408 VEEDWSKLPANAISTSIQRGIFAKPF-RTGIYHRILSILRDGFVIGAKRFEFLAFSASQL 466
Query: 357 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 416
R +S WMFAS G+ A +IR+WMG F +IR+V+K AAR+GQ FSSS +T V + ++EII
Sbjct: 467 RSNSVWMFASNNGVKAEDIRKWMGCFDKIRSVSKCAARMGQLFSSSLQTFVVPVQDVEII 526
Query: 417 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 476
PD+++ Y FSDGIGK+S FA++VA KCGL + PSAFQIRYGGYKGVVA D S
Sbjct: 527 PDIEVTTDGIDYCFSDGIGKISLSFAKQVAHKCGLS-HTPSAFQIRYGGYKGVVAVDRNS 585
Query: 477 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 536
+KLSLR SM K++SE L+V WS+ PC+LNR++ISLLSTLG+ DEIF+ Q++ +
Sbjct: 586 FRKLSLRSSMLKFDSENRMLNVTKWSESMPCYLNREIISLLSTLGVADEIFQALQQKQLY 645
Query: 537 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596
+L +LT+ A + LE ++ ++ NIL ++L+ GY+P+ EP+LSMMLQ + + L+ELR
Sbjct: 646 RLRKMLTNKESALDVLENLAWADSKNILVQMLLQGYEPNVEPYLSMMLQAYHENSLMELR 705
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
++ RIF+P GR ++GCLDE+ L+YGQV+V+I+ + S F I+ G
Sbjct: 706 SRCRIFVPKGRILIGCLDESGILDYGQVYVRITMTKAELQCCDQSFFRKVDESTSTII-G 764
Query: 657 LVVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMR 697
V V KNPCLHPGD+RVL+AV L +VDC++FPQ G R
Sbjct: 765 EVAVTKNPCLHPGDIRVLEAVYDVELEEKGLVDCIIFPQNGGR 807
>gi|255540733|ref|XP_002511431.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223550546|gb|EEF52033.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 983
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 286/647 (44%), Positives = 410/647 (63%), Gaps = 17/647 (2%)
Query: 60 LLIQLLGAPRIFQKGIRSPDLL--YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLC 117
+L++L RI++K I PD+ + + ++ KE D WVRTTDF+ +GQST C
Sbjct: 24 ILLKLKYGARIYKK-ISGPDIASKFSADRYHMCKEDFDFIWVRTTDFSSVKSVGQSTSFC 82
Query: 118 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKI 177
E+ LE D ++F YY E+ + +LE G + + ++VP+V LPYEILF++
Sbjct: 83 WEIEEGLEASDIFKSFPYYTEAREEVILEDGEEWGSASEIVPLVKCGSDSKLPYEILFQL 142
Query: 178 NLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYR 237
N LV ++ +D+N + ++I L KL+ L CY+P ++ Q
Sbjct: 143 NSLVHTQKISLAAVDTNLITTL----GSLTIDTATMILQKLHKLAVTCYDPLAFIKKQLH 198
Query: 238 KYMTSRSKP--SSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 295
+ +P SS ++ ++ HR +TPS++Y GPE+ SN V+++F +F+
Sbjct: 199 VPGRNLKRPFFSSSKNLVNHNIMSCHRALITPSKIYCLGPELESSNYVVKNFASYASDFM 258
Query: 296 RISFIDEDLDKIHSTDLS---PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFS 352
R++F++ED K+ + +S RG A RT IY RILS LR+GI+IG +KFEFLAFS
Sbjct: 259 RVTFVEEDWSKLPANAISMSIQRGIFAKPF-RTGIYHRILSILRDGIVIGAKKFEFLAFS 317
Query: 353 SSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 412
+SQLR +S WMFAS A EIREWMG F +I +++K AAR+GQ FSSSK+T V +
Sbjct: 318 ASQLRSNSVWMFASNDKKKAEEIREWMGCFNKIHSISKCAARMGQLFSSSKQTFIVSPQD 377
Query: 413 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA 472
+EIIPD+++ Y FSDGIGK+S FAR+VA KCGL + PSAFQIRYGGYKGV+A
Sbjct: 378 MEIIPDIEVTSDGINYCFSDGIGKISLSFARQVAQKCGL-NRTPSAFQIRYGGYKGVIAV 436
Query: 473 DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQR 532
D S +KLSLRDSM K+ESE L+V WS+ PC+LNR++I+LL+TLG+ DEIFE Q+
Sbjct: 437 DRNSFRKLSLRDSMCKFESENRMLNVTKWSESMPCYLNREIITLLTTLGVKDEIFEGLQQ 496
Query: 533 EAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKL 592
+ ++ L+ +LT+ A LE ++ NIL ++L+ GY+P+ EP+LSMMLQ + + L
Sbjct: 497 QQLQLLNRMLTNRESALNVLENLAWANCKNILIKMLVQGYEPNVEPYLSMMLQAYHENLL 556
Query: 593 LELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF 652
+ELR++ RIF+P GR ++GCLDETR L+YGQV+V+I+ + + F
Sbjct: 557 VELRSRCRIFVPKGRILIGCLDETRILDYGQVYVRITMTKAELQDADQASFHRV-DETTA 615
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMR 697
+V G V+V KNPCLHPGD+RVL+AV L +VDC++FPQKG R
Sbjct: 616 VVTGKVIVTKNPCLHPGDIRVLEAVYEVELEEKGLVDCILFPQKGER 662
>gi|449518949|ref|XP_004166498.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
Length = 1117
Score = 521 bits (1341), Expect = e-145, Method: Compositional matrix adjust.
Identities = 295/689 (42%), Positives = 421/689 (61%), Gaps = 26/689 (3%)
Query: 22 RKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLL 81
R+I F + H E Y+LE+ +E I E HC + LL++L APRI++K I ++
Sbjct: 137 RRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIYKK-ISGSNMA 195
Query: 82 --YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKES 139
+ S + E D WVRTT+F+P +GQST C E+ L+ D F +YKE+
Sbjct: 196 SRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSCFPFYKET 255
Query: 140 EDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLV 199
+ VLE G + + ++VP++ G L YE+ +++N LV ++ L + L+
Sbjct: 256 QKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKIS---LSAANQDLI 312
Query: 200 DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM-TSRSKPSSPAISLDDGLV 258
D + + I + L +L+ LK CY+P +L Q Y +S P S L + ++
Sbjct: 313 D-FLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRLSNNVM 371
Query: 259 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 318
+RV VTPSR+Y GPE+ SN V+++F +F+R++F++ED K+ P G+
Sbjct: 372 NCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL------PAGAV 425
Query: 319 ATDITR--------TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 370
T I R T IY RI++ LR+GI+IG ++FEFLAFS+SQLR +S WMFAS L
Sbjct: 426 TTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNL 485
Query: 371 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
A EIR+WMG F +IR+++K AAR+GQ FSSS +TL V ++EIIPD+++ Y F
Sbjct: 486 KAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDGIDYCF 545
Query: 431 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYE 490
SDGIGK+S FAR+VA KCG+ ++ PSAFQIRYGGYKGV+A D S +KLSLRDSM K+E
Sbjct: 546 SDGIGKISLSFARQVADKCGV-NHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFE 604
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
S+ L+V PC+LNR++ +LLSTLG+ DE FE Q+E + L +LTD A
Sbjct: 605 SKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVALN 664
Query: 551 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
LE ++ NIL ++L GY+P+ EP+LSMMLQ + +LR++ RIF+P GR ++
Sbjct: 665 VLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILL 724
Query: 611 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 670
GCLDET LNYGQV+ I+ +L + + + + I+ G VVV KNPCLHPGD
Sbjct: 725 GCLDETGILNYGQVYACITLTK-SELQNRNQNYFHTIDETKSILLGKVVVTKNPCLHPGD 783
Query: 671 VRVLKAVNVPALHH--MVDCVVFPQKGMR 697
VRVL+A+ L +VDC++FPQKG R
Sbjct: 784 VRVLEAIFHVELEEKGLVDCLIFPQKGAR 812
>gi|449440690|ref|XP_004138117.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Cucumis sativus]
gi|316989905|gb|ADU77018.1| RNA-dependent RNA polymerase 2 [Cucumis sativus]
Length = 1117
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 295/689 (42%), Positives = 421/689 (61%), Gaps = 26/689 (3%)
Query: 22 RKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLL 81
R+I F + H E Y+LE+ +E I E HC + LL++L APRI++K I ++
Sbjct: 137 RRIEFWIWHEQECYKLEVMFEEILETTGHCLGEEKLNALLLKLKYAPRIYKK-ISGSNMA 195
Query: 82 --YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKES 139
+ S + E D WVRTT+F+P +GQST C E+ L+ D F +YKE+
Sbjct: 196 SRFSSTRYRLCIEDYDYLWVRTTEFSPMRSVGQSTSFCWEVEEDLQASDIFSCFPFYKET 255
Query: 140 EDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLV 199
+ VLE G + + ++VP++ G L YE+ +++N LV ++ L + L+
Sbjct: 256 QKDIVLEDGEEFCSTSEIVPLIKSGLGSNLAYEVEYQLNSLVHMQKIS---LSAANQDLI 312
Query: 200 DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM-TSRSKPSSPAISLDDGLV 258
D + + I + L +L+ LK CY+P +L Q Y +S P S L + ++
Sbjct: 313 D-FLCTLDIDTALNVLQRLHQLKFVCYDPLSFLKTQLHVYKRNCKSLPPSSQKRLSNNVM 371
Query: 259 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 318
+RV VTPSR+Y GPE+ SN V+++F +F+R++F++ED K+ P G+
Sbjct: 372 NCYRVLVTPSRIYCLGPELETSNYVVKNFSSYASDFMRVTFVEEDWSKL------PAGAV 425
Query: 319 ATDITR--------TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 370
T I R T IY RI++ LR+GI+IG ++FEFLAFS+SQLR +S WMFAS L
Sbjct: 426 TTSIQRGILSKPYRTEIYHRIMTVLRDGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNL 485
Query: 371 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
A EIR+WMG F +IR+++K AAR+GQ FSSS +TL V ++EIIPD+++ Y F
Sbjct: 486 KAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTRDVEIIPDIEVNTDGIDYCF 545
Query: 431 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYE 490
SDGIGK+S FAR+VA KCG+ ++ PSAFQIRYGGYKGV+A D S +KLSLRDSM K+E
Sbjct: 546 SDGIGKISLSFARQVADKCGV-NHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFE 604
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
S+ L+V PC+LNR++ +LLSTLG+ DE FE Q+E + L +LTD A
Sbjct: 605 SKNKMLNVTKCCDSMPCYLNREIATLLSTLGVKDESFEALQQEQLHLLKRMLTDKDVALN 664
Query: 551 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
LE ++ NIL ++L GY+P+ EP+LSMMLQ + +LR++ RIF+P GR ++
Sbjct: 665 VLENFHGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILL 724
Query: 611 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 670
GCLDET LNYGQV+ I+ +L + + + + I+ G VVV KNPCLHPGD
Sbjct: 725 GCLDETGILNYGQVYACITLTK-SELQSRNQNYFHTIDETKSILLGKVVVTKNPCLHPGD 783
Query: 671 VRVLKAVNVPALHH--MVDCVVFPQKGMR 697
VRVL+A+ L +VDC++FPQKG R
Sbjct: 784 VRVLEAIFHVELEEKGLVDCLIFPQKGAR 812
>gi|147860348|emb|CAN82568.1| hypothetical protein VITISV_040047 [Vitis vinifera]
Length = 697
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 266/336 (79%), Positives = 292/336 (86%), Gaps = 1/336 (0%)
Query: 363 MFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 422
MFASR GLTAA+IR MG+F +IRNVAKYAARLGQSFSSSKETL V EIEIIPD++I
Sbjct: 1 MFASRPGLTAADIRSRMGDFSQIRNVAKYAARLGQSFSSSKETLKVAKHEIEIIPDIEIH 60
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 482
T YVFSDGIGK+SAE A +VA KCG K + PSAFQIRYGGYKGVVA DPTSS+KLSL
Sbjct: 61 RDGTTYVFSDGIGKISAELAHRVAIKCGCKSSTPSAFQIRYGGYKGVVAVDPTSSRKLSL 120
Query: 483 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 542
R SM KYESE T LDVL+WSKY+PCFLNRQLI+LLSTLG+ D +FEKKQREAV QLD IL
Sbjct: 121 RKSMFKYESENTNLDVLSWSKYRPCFLNRQLITLLSTLGVKDHVFEKKQREAVDQLDTIL 180
Query: 543 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
DPL+AQEALELMSPGENTNILKE+L+CGYKPDAEPFLSMMLQTFRA+KLLELRTKTRIF
Sbjct: 181 KDPLRAQEALELMSPGENTNILKEMLMCGYKPDAEPFLSMMLQTFRAAKLLELRTKTRIF 240
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ-RFIVQGLVVVA 661
+PNGRSMMGCLDETRTL YG+VFVQISG G RQ G+S +F S S FI++G VVVA
Sbjct: 241 VPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFYGSGSHHDNFILEGKVVVA 300
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
KNPCLHPGDVR+L AV+VPALHHMVDCVVFPQKGMR
Sbjct: 301 KNPCLHPGDVRILSAVDVPALHHMVDCVVFPQKGMR 336
>gi|308080784|ref|NP_001183867.1| uncharacterized protein LOC100502460 [Zea mays]
gi|89473792|gb|ABD72708.1| RNA-dependent RNA polymerase [Zea mays]
gi|374257933|gb|AEZ01781.1| RNA-dependent DNA polymerase [Zea mays]
gi|414586834|tpg|DAA37405.1| TPA: mediator of paramutation1 [Zea mays]
Length = 1127
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 280/686 (40%), Positives = 421/686 (61%), Gaps = 23/686 (3%)
Query: 21 MRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIF----QKGIR 76
MR+++ L H + Y+LE+ +E+I E C T +L+QL APRI ++
Sbjct: 143 MRRVDLYLKHDSQSYKLEVLFEDINEC-FGC-HLDGTGAILLQLTYAPRIHIAISGSTVK 200
Query: 77 SPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYY 136
S + F+ KE WVR DFTP++ G+ + L ++L + E+ +
Sbjct: 201 S---RFTDDRFHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFS 257
Query: 137 KESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFY 196
E + + + + S ++VP+V P+G ++PYE+LF++N LV G + ++++ +
Sbjct: 258 GELGE-LAIASMDVFGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLF 316
Query: 197 RLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDG 256
++++ +SI + +K+ LK CYEP +++ + M R K S
Sbjct: 317 KVLED----LSIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHS-MNMRKKALSNKRE-SGK 370
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
L+ +R+ +TPS++Y GPE VSN V+++ +F R++F+DED K+ LS R
Sbjct: 371 LMRCYRIHITPSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSART 430
Query: 317 SSA--TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 374
+ +T +Y RILS L+ G IG +K+EFLAFS+SQLR +S WMFAS LTA
Sbjct: 431 EQGFFSKPLKTGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAEN 490
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 434
IR WMG+F +IR+V+K AAR+GQ FSSS++T V ++E+IPD+++ TKY+FSDGI
Sbjct: 491 IRRWMGHFEDIRSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFSDGI 550
Query: 435 GKVSAEFARKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESEL 493
GK+S FAR+VA GL +PPSAFQIRYGGYKGV+ DPTS LSLR SM+K+ES+
Sbjct: 551 GKISTRFARQVAKLIGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESKS 610
Query: 494 TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE 553
T L++ WSK QPC++NR++ISLLSTLGI DE+FE Q++ + + D +LT+ A L
Sbjct: 611 TMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNKEAALSVLG 670
Query: 554 LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 613
+ G +T ++L+ GY+P +EP+L M+L+ RA++L ++RT+ +I + GR ++GCL
Sbjct: 671 KIG-GGDTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQKGRVLIGCL 729
Query: 614 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 673
DET L YGQV+++I+ Q + E F + + IV G V + KNPCLHPGDVRV
Sbjct: 730 DETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIV-GKVAITKNPCLHPGDVRV 788
Query: 674 LKAVNVPAL--HHMVDCVVFPQKGMR 697
L+AV P L ++DCVVFPQ+G R
Sbjct: 789 LEAVYDPGLDARGLIDCVVFPQRGER 814
>gi|356513586|ref|XP_003525493.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1262
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 288/690 (41%), Positives = 416/690 (60%), Gaps = 25/690 (3%)
Query: 22 RKINFLLSHLGEEYRLELDYENIWEIELHC-PRWQMTKYLLIQLLGAPRIFQKGIRSP-D 79
++++F + H G+ YRLE +E+I E +C LL+++ PRI++K +
Sbjct: 138 KRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDAKLNALLLKMKFGPRIYKKKTGADVA 197
Query: 80 LLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKES 139
+ + F KE + WVRTTDF+P IG ST C E+ D ++F YKE+
Sbjct: 198 AKFRGDRYRFCKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLALDVFKSFPLYKEN 257
Query: 140 EDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLV 199
LE G + S + VP+V LPYE LF++N LV ++ +D L+
Sbjct: 258 LRDLALEDGEEFCSSTEAVPLVKRASQSKLPYEALFQLNSLVHTQKISLASVDDELIDLL 317
Query: 200 ----DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAIS--- 252
+ RA + + KL+ + CYEP +++ Q ++ S K P S
Sbjct: 318 AGLDEETRAVIFL--------KLHKMSFTCYEPLKFVKTQL--HVLSNKKKGLPQSSQKR 367
Query: 253 -LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 311
D ++ HR +TP+++Y GPE+ SN V++HF +F+RI+F++E+ +K+ +
Sbjct: 368 LTDSNIMSCHRALITPTKIYCLGPELETSNHVVKHFASHASDFMRITFVEENWNKLPTNA 427
Query: 312 LSPRGSSA--TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 369
+S + +T IY RIL+ LR+GI+IG ++FEFLAFS+SQLR +S W+FAS
Sbjct: 428 VSTGVQKGLFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDN 487
Query: 370 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 429
L AA+IREWMG F IR+V+K AAR+GQ FSSS +T V ++EIIPDV++ Y
Sbjct: 488 LKAADIREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVVSQDVEIIPDVEVISDGVSYC 547
Query: 430 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKY 489
FSDGIGK+S FAR+VA K L D+ PSAFQIRYGG+KGV+A D S +KLSLR SM K+
Sbjct: 548 FSDGIGKISQSFARQVAQKLKL-DHTPSAFQIRYGGFKGVIAVDRRSFRKLSLRSSMLKF 606
Query: 490 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 549
ES+ + L V WS+ PCFLNR++ISLLSTLG+ DE+ Q + + L +LTD A
Sbjct: 607 ESKNSMLCVTKWSESMPCFLNREIISLLSTLGVKDEVLLAMQHDQLDLLGRMLTDSKAAL 666
Query: 550 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
E LE ++ ++ +IL ++L +P++EP+LSMML+ + A +L +L+++ RIF+P GR +
Sbjct: 667 EVLESLNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVL 726
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 669
+GCLDET LNYGQVFV+I+ R+ G+ +L I+ G VVV KNPCLHPG
Sbjct: 727 VGCLDETGLLNYGQVFVRITVTKTREKFGDENLRKVDGDDNTCIIVGKVVVTKNPCLHPG 786
Query: 670 DVRVLKAVNVPALHH--MVDCVVFPQKGMR 697
D+RVL A+ L + DC+VFPQKG R
Sbjct: 787 DIRVLDAIYSEELEEKGLRDCLVFPQKGHR 816
>gi|357477317|ref|XP_003608944.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355509999|gb|AES91141.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1308
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 286/703 (40%), Positives = 423/703 (60%), Gaps = 23/703 (3%)
Query: 8 WRGVNVTVNFGFGM---RKINFLLSHLGEEYRLELDYENIWEIELHCP-RWQMTKYLLIQ 63
W GV G+ M ++++F ++H + ++LE+ +ENI E + +C LL++
Sbjct: 127 WEGVR-----GWVMPERQRLDFWVTHGDQCFKLEIPFENILECDGYCSDEGSKPNALLLK 181
Query: 64 LLGAPRIFQKGIRSPDLL--YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
L PRI+QK + P++ ++ + F KE + WVRTTDF+ IG ST E+
Sbjct: 182 LRYGPRIYQK-MAGPNVAAKFKDDRYRFCKENFEFMWVRTTDFSTLKSIGHSTSFFWEIV 240
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLV 181
D +F Y+E+ LE G + + VP+V LPYE LF++N LV
Sbjct: 241 EESFDSDVFRSFPLYRENLKDLSLEDGEKFCSPTETVPLVKCRLDSKLPYESLFQLNSLV 300
Query: 182 QNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMT 241
++ ++ L+ A + KL+ + CYEP +++ Q
Sbjct: 301 HTQKISLASVNDELIDLLASLDAETKAVIFQ----KLHKMNSTCYEPLKYVRTQLHVLSI 356
Query: 242 SRSK--PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
+ PS +D+ ++ HR +TPS++Y GPE+ SN V++HF +F+RI+F
Sbjct: 357 KKKSVLPSQQKRLVDNNIMSCHRALITPSKIYCLGPELETSNHVVKHFAAYASDFMRITF 416
Query: 300 IDEDLDKI--HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 357
++ED K+ ++ ++ + + RT IY R+L+ LR+GILIG ++FEFLAFS+SQLR
Sbjct: 417 VEEDWSKLPNNAISITLKKGMFSRPLRTEIYKRVLNILRDGILIGSKRFEFLAFSASQLR 476
Query: 358 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 417
+S W+FAS + AA+IREWMG+F IR+V+K AAR+GQ FSSS++T + ++++IP
Sbjct: 477 SNSVWLFASNDKVKAADIREWMGSFNNIRSVSKCAARMGQLFSSSRQTFEMAPQDVDLIP 536
Query: 418 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADPTS 476
D++I Y FSDGIGK+S FAR++A K L +N PSAFQIRYGGYKGV+A D S
Sbjct: 537 DIEITSDGIDYCFSDGIGKISQSFARQLAEKLKLDENRIPSAFQIRYGGYKGVIAVDRHS 596
Query: 477 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 536
KKLSLR SM K+ES+ L V WS+ PCFLNR++ISLLSTLGI DE Q + ++
Sbjct: 597 FKKLSLRKSMLKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGIKDEALLALQEDQLQ 656
Query: 537 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596
L +LTD A + LE ++ ++ +IL ++L Y+P++EP+LSMML+ +L +L+
Sbjct: 657 LLGKMLTDKEAALDVLESLNGADSNSILVKMLHRFYEPNSEPYLSMMLKAHYTYQLSDLK 716
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
++ RIF+P GR ++GCLDET LNYGQVFV+I+ A ++ G+ +L + I+ G
Sbjct: 717 SRCRIFVPKGRVLIGCLDETGLLNYGQVFVRITVAKTKEKFGDENLRNVDGDDSTRIIVG 776
Query: 657 LVVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMR 697
VVV KNPCLHPGD+RVL AV L + DC+VFPQKG R
Sbjct: 777 KVVVTKNPCLHPGDIRVLDAVYSEELEEKGLRDCLVFPQKGHR 819
>gi|357164043|ref|XP_003579930.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like
[Brachypodium distachyon]
Length = 1140
Score = 503 bits (1294), Expect = e-139, Method: Compositional matrix adjust.
Identities = 284/690 (41%), Positives = 421/690 (61%), Gaps = 30/690 (4%)
Query: 20 GMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQM--TKYLLIQLLGAPRIFQKGIRS 77
G R+++ L+H Y+LE+ +E+I +C R + T +L+QL APRI
Sbjct: 142 GKRRVDLYLTHDSHRYKLEVLFEDI----RNCFRCSLDGTSAILLQLTYAPRI-HTAFSG 196
Query: 78 PDLL--YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE---LPDFKEN 132
P + ++ + KE WVR DFTP+ QS G C L +L+ L + N
Sbjct: 197 PAVYSRFKDDRLHACKEDAKFTWVRALDFTPN----QSFGKCSTLVIKLDEDALMSYILN 252
Query: 133 FAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLD 192
+ + + S VP+V P G ++ YE+LF++N LV G + ++
Sbjct: 253 TLPFSGVLGELAISSMDVVGPSSKAVPLVDCPHGCSVSYEVLFRLNSLVHMGKIVAKHVN 312
Query: 193 SNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAIS 252
+ + ++ + P+ IS +K+ L+ CYEP +++ + + +T + SS
Sbjct: 313 AKLFAFLE--QVPLHIS--RRIFEKMSKLESTCYEPLQFIESELK--LTHNALLSSKREG 366
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
+ L+ +R+ +TPS++Y GPE SN V++H +F+R++F+DED K+ +
Sbjct: 367 -EGKLMRCYRIHITPSKIYCLGPEEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAI 425
Query: 313 SPRGSSA--TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 370
S R + +T +Y RILS L+ G +IG +KFEFLAFS+SQLRE S WMFAS L
Sbjct: 426 SARIEQGFFSQPFKTGLYYRILSILKEGFIIGPKKFEFLAFSASQLREGSVWMFASNDSL 485
Query: 371 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
A IR WMG+F EIR+V+K AAR+GQ FSSS++T+ V ++E IPD+++ TKY+F
Sbjct: 486 NAESIRRWMGHFEEIRSVSKCAARMGQLFSSSRQTVEVRPWDVEEIPDIEVTTNNTKYIF 545
Query: 431 SDGIGKVSAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKY 489
SDGIGK+S FAR++A + GL NPPSAFQIR+GGYKGV+A DP+S + LSLR SMRK+
Sbjct: 546 SDGIGKMSVRFAREIAYRIGLDHTNPPSAFQIRFGGYKGVIAVDPSSFRNLSLRPSMRKF 605
Query: 490 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 549
ES+ L++ +WSK QPC++NR++ISLLSTLGI DE+FE Q++ +R+LD +LT+ A
Sbjct: 606 ESDCRMLNITSWSKSQPCYVNREIISLLSTLGIRDEVFELMQQDDMRELDEMLTNKEVAL 665
Query: 550 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
L + E T ++L+ GY+P +EP+L M+L+ + ++L ++R+K +I +P GR +
Sbjct: 666 SVLGKIGSAE-TKTAADMLLQGYEPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVL 724
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 669
+GCLDET L YGQV+++I+ Q E FS + +V G V V+KNPCLHPG
Sbjct: 725 LGCLDETGKLKYGQVYIRITKNNKEQKENEQPYFSEDDGKTVTLV-GKVAVSKNPCLHPG 783
Query: 670 DVRVLKAVNVPALH--HMVDCVVFPQKGMR 697
DVRVL+AV P LH +VDCVVFPQ+G R
Sbjct: 784 DVRVLEAVYDPGLHAKKLVDCVVFPQRGER 813
>gi|168044164|ref|XP_001774552.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162674107|gb|EDQ60620.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 843
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 265/538 (49%), Positives = 359/538 (66%), Gaps = 17/538 (3%)
Query: 174 LFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLT 233
+F++N L+Q + G LDS FY L+ P P + + L++L C++P + +
Sbjct: 1 MFQVNQLLQTSKLIGETLDSRFYHLLQPDVTPHEQAKL--VLERLGKRVGPCWDPVKEIQ 58
Query: 234 DQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
++ + S P S +I L G+ +V RV VTP++VY GPE++ SNRV R F D
Sbjct: 59 EELGNMKETLSSPRSVSIKLASGMTWVRRVLVTPTKVYCTGPEVDTSNRVTRQFASHSDR 118
Query: 294 FLRISFIDEDLDKIHSTDLS-PRGSSA---TDITRTRIYTRILSTLRNGILIGDRKFEFL 349
F+R+SF+DE+L+ + S LS PR A D R+ +Y R+L TL+ GI+IGD KFEFL
Sbjct: 119 FMRMSFVDENLEPLSSVALSVPRRGGAQDGVDAERSLLYNRVLKTLKEGIVIGDHKFEFL 178
Query: 350 AFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH 409
AFSSSQLRE S WMFAS LTA IR WMG+F IRNVAK AAR+GQ FSSSK TL V
Sbjct: 179 AFSSSQLREHSVWMFASYAQLTATMIRAWMGDFLTIRNVAKCAARMGQCFSSSKPTLEVP 238
Query: 410 MDEIEIIPDVK--IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 467
E+E IPD++ E G +KY FSDGIGK+S EFA++VA + + + PSAFQIRYGGYK
Sbjct: 239 EQEVEQIPDIEREDEFGMSKYCFSDGIGKISKEFAKEVAKRLQM-EVVPSAFQIRYGGYK 297
Query: 468 GVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIF 527
GVVA DP S K+SLR SMRK+ S+ LD+LA S++ P +LNRQ+I LLSTLGI D +F
Sbjct: 298 GVVAVDPHSDFKISLRPSMRKFASKHVGLDILASSRFLPSYLNRQIILLLSTLGIEDSVF 357
Query: 528 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTF 587
E+ Q V +L+ +L D A++ L++ GE L ++L GY+P EPF+ M+L+ F
Sbjct: 358 EQMQHRMVSELNDMLKDGDVARDMLQINHAGEMHTRLIDMLAAGYQPQTEPFVKMLLEAF 417
Query: 588 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA-----GYR---QLHGE 639
RAS+L++LR ++RI P GR +MGCLDET++L+YG++F+Q++ A G R +
Sbjct: 418 RASQLVDLRKRSRILEPKGRVLMGCLDETKSLSYGEIFLQVTPALGRRKGLRDGLETFDS 477
Query: 640 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+ S++ ++V G V+VAKNPCLHPGD+R LKAV+ P L HMVDC+VFPQKG R
Sbjct: 478 YPIGSAANQNIAYVVTGWVIVAKNPCLHPGDIRKLKAVDGPGLRHMVDCLVFPQKGHR 535
>gi|302819337|ref|XP_002991339.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
gi|300140919|gb|EFJ07637.1| hypothetical protein SELMODRAFT_448382 [Selaginella moellendorffii]
Length = 1134
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 307/728 (42%), Positives = 419/728 (57%), Gaps = 51/728 (7%)
Query: 7 LWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLG 66
LW V F FG ++N LL H G +Y+LEL + N+ ++ Q + +LL+QL
Sbjct: 115 LWSCSGVAAEFCFGSCQLNLLLQHDGVDYKLELLFRNLRFVDAFVETSQAS-HLLLQLFR 173
Query: 67 APRIFQKGIRSP----DLLYESPV---------------FNFFKEVPDDQWVRTTDFTPS 107
P +FQ G+ SP + + ++P+ + + K + W R+TDFTP
Sbjct: 174 PPLVFQ-GLPSPSEQGNPVLDTPLAILRHFKAVRANSYNYKYSKFAKEPTWTRSTDFTPG 232
Query: 108 NFIGQSTGLCMELPYRLE----LPDFKENFAYYKESEDR-FVLETGSAYSRSLDLVPI-- 160
I QS C+E P L L K Y S DR L G +Y+ +L PI
Sbjct: 233 KAISQSLVYCLEFPSDLSDEQALKISKSLSGYDTSSMDRALTLVAGESYALQQELSPILS 292
Query: 161 VGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH 220
+ DG LP++I++KIN LVQ+G ++ + + L+ + + +S ALDKL
Sbjct: 293 ITEDDGAPLPFDIVYKINFLVQSGYMSPASVTRELFTLLQGFPEKLCLS----ALDKLVS 348
Query: 221 LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVS 280
+ + Y K RS+ P D G YV R+ VTP++VY GPE+ S
Sbjct: 349 PAGNVSLDAFSTIESYLKCHHRRSELVEP----DGGYTYVKRLVVTPAKVYCTGPELERS 404
Query: 281 NRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI----TRTRIYTRILSTLR 336
N V R ++ NFLR+SF+DE+ + +++ + + I + +Y R+L+ +R
Sbjct: 405 NGVTRRYKDFAANFLRVSFVDENFETLYADAVRLPTKVSVQIGLLPEPSSVYHRVLAVVR 464
Query: 337 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLG 396
+G+ IG +KF+FL FS+SQLRE S WMFA +TA IR WMG+F N+AK AAR+G
Sbjct: 465 DGVTIGGKKFKFLGFSASQLREHSLWMFAGAGSVTAESIRAWMGDFGGFTNIAKCAARIG 524
Query: 397 QSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPP 456
QSFSSS+ +L V DE+ + D+ T+Y FSDGIGK+S FA VA C + P
Sbjct: 525 QSFSSSRSSLEVLEDELSSVEDIYC---GTRYCFSDGIGKISKAFATSVARACNMP-VVP 580
Query: 457 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISL 516
SA QIRY GYKGVVA DPT S KLSLR SM K+ SE T LDVL S+Y P +LNRQ I L
Sbjct: 581 SALQIRYAGYKGVVAVDPTCSTKLSLRPSMLKFPSERTGLDVLKASQYAPYYLNRQSIIL 640
Query: 517 LSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP-GENTNILKELLICGYKPD 575
++TLG+ DE+FE+ Q E ++ LD +L DP A E L S GE +I+ +L GYKP
Sbjct: 641 MTTLGVPDEVFERMQNEELKILDEMLRDPQTAIEVLRSSSSGGEVHSIMVAMLQAGYKPA 700
Query: 576 AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA-GYR 634
EPFL +L FR+ +L LRTK+RI++P GR ++GCLDET L+YGQVFVQ+S G R
Sbjct: 701 HEPFLRRLLDNFRSLQLYLLRTKSRIYVPKGRCLLGCLDETGVLDYGQVFVQVSPTPGTR 760
Query: 635 Q-----LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 689
+ L +RS +V G VVV KNPCLHPGD+ VL+AV+VP LHHM+DCV
Sbjct: 761 RVVDDGLDDARPRRGVTRSESACVVLGKVVVTKNPCLHPGDLLVLEAVDVPGLHHMIDCV 820
Query: 690 VFPQKGMR 697
VFPQ+G R
Sbjct: 821 VFPQRGKR 828
>gi|356565022|ref|XP_003550744.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Glycine max]
Length = 1120
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 281/685 (41%), Positives = 412/685 (60%), Gaps = 15/685 (2%)
Query: 22 RKINFLLSHLGEEYRLELDYENIWEIELHC-PRWQMTKYLLIQLLGAPRIFQKGIRSPDL 80
++++F + H G+ YRLE +E+I E +C LL+++ PRI++K +
Sbjct: 137 KRLDFWVWHNGDCYRLEFLFEDILESHGYCLGEDARLNALLLKMKFGPRIYKKKTGTDVA 196
Query: 81 L-YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKES 139
+ + F KE + WVRTTDF+P IG ST C E+ D +F YKE+
Sbjct: 197 ANFRGDRYRFLKEDFEFLWVRTTDFSPLKSIGHSTSFCWEIVEEHLASDVFTSFPLYKEN 256
Query: 140 EDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLV 199
LE + VP+V LPYE +F++N LV ++ +D L+
Sbjct: 257 LRDLALEDREELCSLTEAVPLVKHATQSKLPYEAVFQLNSLVHTQKISLASVDDELIDLL 316
Query: 200 DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKP--SSPAISL-DDG 256
A + KL+ + CYEP +++ Q ++++ K SP L D
Sbjct: 317 ----ADLDEETRAVVFQKLHKMSFTCYEPLKFVKTQLH-VLSNKKKGLLQSPQNRLTDSN 371
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
++ HR +TP+++Y GPE+ SN V++HF +F+RI+F++E+ +K+ + +S
Sbjct: 372 IMSCHRALITPTKIYCLGPELETSNHVVKHFASLASDFMRITFVEENWNKLPTNAVSTGV 431
Query: 317 SSA--TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 374
+ +T IY RIL+ LR+GI+IG ++FEFLAFS+SQLR +S W+FAS L AA+
Sbjct: 432 QKGIFSKPLKTEIYKRILTILRDGIVIGSKRFEFLAFSASQLRSNSVWLFASNDNLKAAD 491
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 434
IREWMG F IR+V+K AAR+GQ FSSS +T V +++E+IPD+++ Y FSDGI
Sbjct: 492 IREWMGCFNNIRSVSKCAARMGQLFSSSMQTFEVASEDVEMIPDIEVTSDGVSYCFSDGI 551
Query: 435 GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELT 494
GK+S FAR+VA K L D+ PSAFQIRYGG+KGV+A D S +KLSLR SM K+ES
Sbjct: 552 GKISQCFARQVAQKLNL-DHTPSAFQIRYGGFKGVIAIDRHSFRKLSLRSSMLKFESNNR 610
Query: 495 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL 554
L V WS+ PCFLNR++ISLL+TLG+ DE+ Q++ + L +LTD A + LE
Sbjct: 611 MLCVTKWSESMPCFLNREIISLLTTLGVKDEVLLAMQQDQLDLLGRMLTDSKAALDVLES 670
Query: 555 MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 614
++ ++ +IL ++L +P++EP+LSMML+ + A +L +L+++ RIF+P GR ++GCLD
Sbjct: 671 LNGADSKSILVKMLHEFNEPNSEPYLSMMLKAYYAYQLSDLKSRCRIFVPKGRVLVGCLD 730
Query: 615 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
ET LNYGQVFV+I+ A R+ G+ +L I+ G VVV KNPCLHPGD+RVL
Sbjct: 731 ETGLLNYGQVFVRITVAKTRENFGDENLRKVDGDDSTRIIVGKVVVTKNPCLHPGDIRVL 790
Query: 675 KAVNVPALHH--MVDCVVFPQKGMR 697
A+ L + DC+VFPQKG R
Sbjct: 791 DAIYSKELEENGLRDCLVFPQKGHR 815
>gi|302812554|ref|XP_002987964.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
gi|300144353|gb|EFJ11038.1| hypothetical protein SELMODRAFT_126929 [Selaginella moellendorffii]
Length = 1052
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 303/710 (42%), Positives = 410/710 (57%), Gaps = 55/710 (7%)
Query: 7 LWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLG 66
LW V F FG ++N LL H G +Y+LEL + N+ ++ Q + LL +L
Sbjct: 73 LWSCSGVAAEFCFGSCQLNLLLQHDGVDYKLELLFRNLRFVDAFVETSQASHLLLQVMLD 132
Query: 67 AP----RIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
P R F K +RS Y+ ++ F + P W R+TDFTP I QS C+E P
Sbjct: 133 TPLAILRHF-KAVRSNSYNYK---YSKFAKEP--TWTRSTDFTPGKAISQSLVYCLEFPS 186
Query: 123 RLE----LPDFKENFAYYKESEDR-FVLETGSAYSRSLDLVPI--VGPPDGIALPYEILF 175
L L K Y S DR L G +Y+ +L PI + DG LP++I++
Sbjct: 187 DLSDEQALKISKSLSGYDTSSMDRALTLVAGESYALQQELSPILSITEDDGAPLPFDIVY 246
Query: 176 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQ 235
KIN LVQ+G ++ + + L+ + + +S ALDKL + +
Sbjct: 247 KINFLVQSGYMSPASVTRELFTLLQGFPEKLCLS----ALDKLVSPAGNVSLDAFSTIES 302
Query: 236 YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 295
Y K RS+ P D G YV R+ VTP++VY GPE+ SN V R ++ NFL
Sbjct: 303 YLKCHHRRSELVEP----DGGYTYVKRLVVTPTKVYCTGPELERSNGVTRRYKDFAANFL 358
Query: 296 RISFIDEDLDKIHSTDLSPRGSSATDI----TRTRIYTRILSTLRNGILIGDRKFEFLAF 351
R+SF+DE+ + +++ + + I + +Y R+L+ +R+G+ IG +KF+FL F
Sbjct: 359 RVSFVDENFETLYADAVRLPTKVSVQIGLLPEPSSVYHRVLAVVRDGVTIGGKKFKFLGF 418
Query: 352 SSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMD 411
S+SQLRE S WMFA +TA IR WMG+F N+AK AAR+GQSFSSS+ +L V D
Sbjct: 419 SASQLREHSLWMFADAGSVTAESIRAWMGDFGGFTNIAKCAARIGQSFSSSRSSLEVLED 478
Query: 412 EIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPP---SAFQIRYGGYKG 468
E+ + D+ T+Y FSDG+GK+S FA VA C N P SA QIRY GYKG
Sbjct: 479 ELSSVEDIYC---GTRYCFSDGVGKISKAFATSVARAC----NMPVVLSALQIRYAGYKG 531
Query: 469 VVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFE 528
VVA DPT S KLSLR SM K+ SE T LDVL S+Y P +LNRQ I L++TLG+ DE+FE
Sbjct: 532 VVAVDPTCSTKLSLRPSMLKFPSERTGLDVLKASQYAPYYLNRQSIILMTTLGVPDEVFE 591
Query: 529 KKQREAVRQLDAILTDPLKAQEALELMSP-GENTNILKELLICGYKPDAEPFLSMMLQTF 587
+ Q+E ++ LD +L+DP A E L S GE +I+ +L GYKP EPFL +L F
Sbjct: 592 RMQKEELKILDEMLSDPQTAIEVLRSSSSGGEAHSIMVAMLQAGYKPAHEPFLRRLLDNF 651
Query: 588 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR 647
R+ +L LRTK+RI++P GR ++GCLDET L+YGQVFVQ+ +R
Sbjct: 652 RSLQLYLLRTKSRIYVPKGRCLLGCLDETGVLDYGQVFVQV---------------GVTR 696
Query: 648 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
S +V G VVV KNPCLHPGD+ VL+AV+VP LHHM+DCVVFPQ+G R
Sbjct: 697 SESACVVLGKVVVTKNPCLHPGDLLVLEAVDVPGLHHMIDCVVFPQRGKR 746
>gi|4375829|emb|CAA09894.1| RNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 513
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/323 (75%), Positives = 269/323 (83%), Gaps = 14/323 (4%)
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 434
IR WMG+F IRNVAKYAARLGQSFSSS+ETL+V DEIE+IPDV+I T+YVFSDGI
Sbjct: 1 IRAWMGDFDHIRNVAKYAARLGQSFSSSRETLNVRSDEIEVIPDVEIISLGTRYVFSDGI 60
Query: 435 GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELT 494
GK+SAEFARKVA KCGL + PSAFQIRYGGYKGVVA DP SSKKLSLR SM K+ESE T
Sbjct: 61 GKISAEFARKVARKCGLTEFSPSAFQIRYGGYKGVVAVDPNSSKKLSLRKSMSKFESENT 120
Query: 495 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL 554
KLDVLAWSKYQPC++NRQLI+LLSTLG+ D +FEKKQRE V +LDAILT PL+A EAL L
Sbjct: 121 KLDVLAWSKYQPCYMNRQLITLLSTLGVTDSVFEKKQREVVDRLDAILTHPLEAHEALGL 180
Query: 555 MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 614
M+PGENTNILK L++CGYKPDAEPFLSMMLQ FRASKLLELRTKTRIFI GRSMMGCLD
Sbjct: 181 MAPGENTNILKALILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRIFISGGRSMMGCLD 240
Query: 615 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
ETRTL YGQV VQ S R +RFI+ G VVVAKNPCLH GDVRVL
Sbjct: 241 ETRTLEYGQVVVQYS--------------DPMRPGRRFIITGPVVVAKNPCLHSGDVRVL 286
Query: 675 KAVNVPALHHMVDCVVFPQKGMR 697
+AVNVPAL+HMVDCVVFPQKG+R
Sbjct: 287 QAVNVPALNHMVDCVVFPQKGLR 309
>gi|326493668|dbj|BAJ85295.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 1127
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 281/704 (39%), Positives = 423/704 (60%), Gaps = 17/704 (2%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
++FA +V V G R+++ L+H + ++LE+ +E+I C + +L
Sbjct: 124 REFAAADSWDSVRVEIIPGKRRMDVYLNHDSQMFKLEVFFEDIRNC-YQC-SFDGAGGIL 181
Query: 62 IQLLGAPRIFQKGIRSPDLL--YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCME 119
+QL+ APRI I P + + F+ KE WVR DFTP++ G+ + L +
Sbjct: 182 LQLMYAPRICTT-ISGPAVYSRFSDDRFHACKEDAKFTWVRALDFTPNHSFGKCSTLALV 240
Query: 120 LPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINL 179
L + F N V+ + + S +VP+V P G ++ YE+LF++N
Sbjct: 241 LDEGAPV-SFILNSLPLSGELGELVISSMDFFGSSSKVVPLVDCPSGCSVSYEVLFRLNS 299
Query: 180 LVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKY 239
LV G + ++++ ++ ++ PV IS +K+ L+ CYEP +++ +
Sbjct: 300 LVHMGKLVAKHVNADLFKALE--EIPVHIS--RRIFEKMSKLEFTCYEPLQFIQQEAHSR 355
Query: 240 MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
S S + L+ +R+ +TPS++Y GPE VSN V++H ++ +F R++F
Sbjct: 356 KRSHDALLSSKTEGEGKLMMCYRIHITPSKIYCLGPEEEVSNYVVKHHKQYASDFTRVTF 415
Query: 300 IDEDLDKIHSTDLSPRGSSA--TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 357
+DED K+ +S R + +T +Y RILS L+ G IG +K+EFLAFS+SQLR
Sbjct: 416 VDEDWSKLFPDAISARTGRGFFSQPLKTGLYYRILSILKEGFSIGPKKYEFLAFSASQLR 475
Query: 358 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 417
SS WMFAS L A +IR WMGNF EIR+V+K AAR+GQ FSSS++TL + ++E IP
Sbjct: 476 GSSVWMFASNDSLKAEDIRRWMGNFEEIRSVSKCAARMGQLFSSSRQTLDILPRDVEEIP 535
Query: 418 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPTS 476
D+++ TKY+FSDGIGK+S FA+++A + GL NPPSAFQIRYGGYKGVVA DP S
Sbjct: 536 DIEVTTDGTKYIFSDGIGKISERFAKEMACRIGLDYTNPPSAFQIRYGGYKGVVAVDPDS 595
Query: 477 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 536
+ LSLR SM+K+ES+ ++ + SK QPC++NR++ISLLSTLGI DEIFE Q+ +R
Sbjct: 596 FRNLSLRPSMKKFESKSRMFNITSTSKSQPCYMNREIISLLSTLGIRDEIFELMQQHDMR 655
Query: 537 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596
+LD +LT+ A L + E T ++L+ GY+P EP+L M+L+ + ++L ++R
Sbjct: 656 ELDEMLTNREAALSVLGKIGSAE-TKTASKILLQGYEPSLEPYLLMILKAHQDNRLTDIR 714
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR-FIVQ 655
T+ +I +P GR ++GCLDET L YGQV+++I+ Q FS + + +V
Sbjct: 715 TRCKIHVPKGRVLIGCLDETGELEYGQVYIRITKNSKEQKDNCQPYFSEDNGKDKTAVVV 774
Query: 656 GLVVVAKNPCLHPGDVRVLKAVNVPALH--HMVDCVVFPQKGMR 697
G V V+KNPCLHPGD+RVL+AV L+ ++VDCVVFPQ+G R
Sbjct: 775 GKVAVSKNPCLHPGDIRVLEAVYDHGLYSKNLVDCVVFPQRGER 818
>gi|297809335|ref|XP_002872551.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
gi|297318388|gb|EFH48810.1| RNA-dependent RNA polymerase 2 [Arabidopsis lyrata subsp. lyrata]
Length = 1134
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 276/709 (38%), Positives = 417/709 (58%), Gaps = 21/709 (2%)
Query: 2 KKFAVL--WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQM--T 57
K+F L W GV + R++ F + GE Y++E+ +E+I E C T
Sbjct: 121 KRFCALEKWDGVRCWI--LEEKRRLEFWVWENGECYKIEVRFEDIVETLCCCVNGDASET 178
Query: 58 KYLLIQLLGAPRIFQKGIRSPDLL--YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTG 115
L++L P++F++ + P + ++S + F KE D W+RTTDF+ IG ST
Sbjct: 179 NAFLLKLKYGPKVFKR-VSGPHIATKFKSDRYQFCKEDFDFMWIRTTDFSGLKSIGTSTC 237
Query: 116 LCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPD-GIALPYEIL 174
C+E+ + D YY+E G ++ +VP++ G+ PYEIL
Sbjct: 238 FCLEVHNGSTMLDVFSGLPYYREETLSLTFVDGKNFASVSQIVPLLNAAILGLEFPYEIL 297
Query: 175 FKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTD 234
F++N LV ++ L ++ L++ +R +S+ L KL+ CY+P ++
Sbjct: 298 FQLNALVHAQKIS--LFAASNMELINIFRG-LSLETTLVILKKLHQQSSICYDPLFFVKT 354
Query: 235 QYRKYMTS-RSKPSSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDID 292
Q + + + P+S L + ++ R VTPS++Y GPE+ +N V+++F +
Sbjct: 355 QMQSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVS 414
Query: 293 NFLRISFIDEDLDKIHSTDLSPRGSSATDIT--RTRIYTRILSTLRNGILIGDRKFEFLA 350
+F+R++F++ED K+ + L+ + RT IY R+LS L GI +G ++FEFLA
Sbjct: 415 DFMRVTFVEEDWSKLPANALTVNSKEGYFVKPFRTNIYNRVLSILGEGITVGPKRFEFLA 474
Query: 351 FSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHM 410
FS+SQLR +S WMFAS + A +IREWMG FR+IR+++K AAR+GQ FS+S++TL+V
Sbjct: 475 FSASQLRGNSVWMFASNEKIKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLNVRA 534
Query: 411 DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 470
++E IPD+++ Y FSDGIGK+S FA++VA KCGL + PSAFQIRYGGYKGV+
Sbjct: 535 QDVEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLS-HVPSAFQIRYGGYKGVI 593
Query: 471 AADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKK 530
A D +S +K+SLRDSM K++S L+V W++ PCFLNR++I LLSTLGI D +FE
Sbjct: 594 AVDRSSFRKMSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAVFEAM 653
Query: 531 QREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRAS 590
Q + L +L D A L+ +S + N+L ++L+ GY P +EP+LSMML+ S
Sbjct: 654 QAVHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHES 713
Query: 591 KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 650
+L EL+++ RI +P GR ++GC+DE L YGQVFV+++ E S F +
Sbjct: 714 QLSELKSRCRILVPKGRILIGCMDEMGILEYGQVFVRVTLTKAELKSREQSYFHKI-DEE 772
Query: 651 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMR 697
+V G VVV KNPCLHPGD+RVL A+ +DC++FPQKG R
Sbjct: 773 TSVVIGKVVVTKNPCLHPGDIRVLDAIYEVNFEEKGFLDCIIFPQKGER 821
>gi|315307484|gb|ADU04145.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 491 bits (1264), Expect = e-136, Method: Compositional matrix adjust.
Identities = 290/702 (41%), Positives = 419/702 (59%), Gaps = 28/702 (3%)
Query: 8 WRGVNVTVNFGFGM---RKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQL 64
W GV G+ M R++ F + GE Y+L+ +++I+E C LL+++
Sbjct: 127 WEGVR-----GWIMPERRRLEFWVWTDGECYKLDFLFDDIFETVGCCFDGSACNALLLRV 181
Query: 65 LGAPRIFQKGIRSPDLL--YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
APRI+QK + P++ + + ++ KE D WVRTTDF+ IGQST E
Sbjct: 182 RYAPRIYQK-VSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNA 240
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQ 182
+ D Y+E LE +S ++VP+V P L YEILF++N LV
Sbjct: 241 GFSISDMSTYLPCYREDIQSPSLEARREFSSPSEIVPLVKFPSDSKLAYEILFQLNALVH 300
Query: 183 NGCVAGPLLDSNFYRLVD--PYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
++ +D++ ++ P V I L KL L+ CY P ++ +
Sbjct: 301 TQKISIAAVDTDLIGILSGLPVETAVMI------LQKLRLLQSPCYNPVSFVKAKLPTGK 354
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R S + ++ R +TP+++Y GPE+ +N V+++F +F+R++F+
Sbjct: 355 NYRIPLSVSERLKNHNVMSCRRALITPTKIYCLGPELETANYVVKNFVEYASDFMRVTFV 414
Query: 301 DEDLDKIHSTDLSPRGSSATDITR---TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 357
+ED K+ + +S G +R T+IY RIL L+NGI+IGD++FEFLAFS+SQLR
Sbjct: 415 EEDWSKLSANAIST-GVHLGVFSRPFKTKIYDRILYVLQNGIVIGDKRFEFLAFSASQLR 473
Query: 358 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 417
+S WMFAS + A +IREWMG F++IR+++K A+R+GQ FSSS TL V + ++EII
Sbjct: 474 SNSVWMFASNDEVKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIID 533
Query: 418 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 477
D++++ Y FSDGIGK+S FAR+VA KCGL ++ PSAFQIRYGGYKGVVA D S
Sbjct: 534 DIEVKTDGINYCFSDGIGKISLPFARQVAEKCGL-NHIPSAFQIRYGGYKGVVAVDRNSF 592
Query: 478 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 537
K+SLRDSM K+ES++ L+V WS+ PCFLNR++++L STLGI DE+FE+ Q E +
Sbjct: 593 WKMSLRDSMLKFESKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCL 652
Query: 538 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 597
L +LT+ A + L+ + + NIL E+L Y+P+ +P+LSMMLQ + L +L++
Sbjct: 653 LGKMLTNREAALDTLQSLGGVNSKNILVEMLQF-YEPNVQPYLSMMLQAHYENLLSDLKS 711
Query: 598 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 657
+ RIF+P GR ++GCLDET TLNYGQV++ I + S F + IV G
Sbjct: 712 RCRIFVPKGRILIGCLDETGTLNYGQVYLCIKMKKAELECADQSYFRKV-DEETAIVIGK 770
Query: 658 VVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMR 697
VVV KNPCLHPGDVRVL+AV P L +VDC+VFPQKG R
Sbjct: 771 VVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVDCLVFPQKGER 812
>gi|125548642|gb|EAY94464.1| hypothetical protein OsI_16234 [Oryza sativa Indica Group]
Length = 1136
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 279/702 (39%), Positives = 421/702 (59%), Gaps = 23/702 (3%)
Query: 5 AVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQL 64
A W GV V G R+++ L H + Y+LE+ +E++ + L C M +L+QL
Sbjct: 127 ADAWDGVRAEVIPG--KRRVDLYLEHDPQRYKLEVLFEDMKDC-LGCTLDGMGA-ILLQL 182
Query: 65 LGAPRIFQKGIRSPDL--LYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
APRI I P + + F+ KE WVR DFTP+ G+ + L ++L
Sbjct: 183 NYAPRI-HTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGK 241
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQ 182
+ D ++ + + + + S ++VP+V P ++PYE+LF++N L+
Sbjct: 242 SALVSDILKSLPF-SGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMH 300
Query: 183 NGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS 242
G + ++++ ++ + PV +S +K++ L+ CYEP +++ Q Y
Sbjct: 301 MGKIVAKHVNADLFKALQ--ELPVDVS--RRIFEKMHKLESTCYEPLQFI--QQEAYSMK 354
Query: 243 RSK----PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRIS 298
RS + + L+ +RV +TPS+++ GPE V+N V++H +F+R++
Sbjct: 355 RSHNVLLSNEGEGEGERKLMKCYRVNITPSKIFCLGPEEEVTNYVVKHHSAYASDFVRVT 414
Query: 299 FIDEDLDKIHSTDLSPRGSSA--TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 356
F+DED K+ S +S R + +T +Y RILS L+ G IG + FEFLAFS+SQL
Sbjct: 415 FVDEDWSKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQL 474
Query: 357 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 416
R +S WMFAS L A IR WMG+F IR+V+K AAR+GQ FSSS++T V ++E+I
Sbjct: 475 RGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVI 534
Query: 417 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPT 475
PD++I +KY+FSDGIGK+S FA++VA GL N PSAFQIRYGGYKGV+A DP
Sbjct: 535 PDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPM 594
Query: 476 SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 535
SS LSLR SM+K+ESE L++ +WSK QPC++NR++ISLLSTLGI DEIF Q++ +
Sbjct: 595 SSIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEM 654
Query: 536 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 595
R+ + +LT+ A L + G T ++L+ GY+P +EP+LSM+L+ + ++L ++
Sbjct: 655 RETEEMLTNKEVALSVLGKLG-GSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDI 713
Query: 596 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 655
RT+ +I +P GR ++GCLDET L YGQV+++I+ Q S F + + +V
Sbjct: 714 RTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVV- 772
Query: 656 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
G V + KNPCLHPGD+RVL+A+ P L MVDC+VFPQ+G R
Sbjct: 773 GKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGER 814
>gi|15237051|ref|NP_192851.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
gi|75318859|sp|O82504.1|RDR2_ARATH RecName: Full=RNA-dependent RNA polymerase 2; Short=AtRDRP2;
AltName: Full=Protein SILENCING MOVEMENT DEFICIENT 1;
AltName: Full=RNA-directed RNA polymerase 2
gi|3600048|gb|AAC35535.1| similar to hypothetical proteins in Schizosaccharomyces pombe
(GB:Z98533) and C. elegans (GB:Z48334 and Z78419)
[Arabidopsis thaliana]
gi|4850292|emb|CAB43048.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|7267812|emb|CAB81214.1| putative RNA-directed RNA polymerase [Arabidopsis thaliana]
gi|332657576|gb|AEE82976.1| RNA-dependent RNA polymerase 2 [Arabidopsis thaliana]
Length = 1133
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 274/707 (38%), Positives = 415/707 (58%), Gaps = 18/707 (2%)
Query: 2 KKFAVL--WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKY 59
K+F L W GV + R++ F + G+ Y++E+ +E+I E C ++
Sbjct: 121 KRFCALEKWDGVRCWILTE--KRRVEFWVWESGDCYKIEVRFEDIIETLSCCVNGDASEI 178
Query: 60 --LLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLC 117
L++L P++F++ ++S + F KE D W+RTTDF+ S IG ST C
Sbjct: 179 DAFLLKLKYGPKVFKRVTVHIATKFKSDRYRFCKEDFDFMWIRTTDFSGSKSIGTSTCFC 238
Query: 118 MELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPD-GIALPYEILFK 176
+E+ + D YY+E G ++ + +VP++ G+ PYEILF+
Sbjct: 239 LEVHNGSTMLDIFSGLPYYREDTLSLTYVDGKTFASAAQIVPLLNAAILGLEFPYEILFQ 298
Query: 177 INLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQY 236
+N LV ++ L ++ L+ R +S+ L KL+ CY+P ++ Q
Sbjct: 299 LNALVHAQKIS--LFAASDMELIKILRG-MSLETALVILKKLHQQSSICYDPVFFVKTQM 355
Query: 237 RKYMTS-RSKPSSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNF 294
+ + + P+S L + ++ R VTPS++Y GPE+ +N V+++F + +F
Sbjct: 356 QSVVKKMKHSPASAYKRLTEQNIMSCQRAYVTPSKIYLLGPELETANYVVKNFAEHVSDF 415
Query: 295 LRISFIDEDLDKIHSTDLSPRGSSATDI--TRTRIYTRILSTLRNGILIGDRKFEFLAFS 352
+R++F++ED K+ + LS + +RT IY R+LS L GI +G ++FEFLAFS
Sbjct: 416 MRVTFVEEDWSKLPANALSVNSKEGYFVKPSRTNIYNRVLSILGEGITVGPKRFEFLAFS 475
Query: 353 SSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 412
+SQLR +S WMFAS + A +IREWMG FR+IR+++K AAR+GQ FS+S++TL V +
Sbjct: 476 ASQLRGNSVWMFASNEKVKAEDIREWMGCFRKIRSISKCAARMGQLFSASRQTLIVRAQD 535
Query: 413 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA 472
+E IPD+++ Y FSDGIGK+S FA++VA KCGL + PSAFQIRYGGYKGV+A
Sbjct: 536 VEQIPDIEVTTDGADYCFSDGIGKISLAFAKQVAQKCGLS-HVPSAFQIRYGGYKGVIAV 594
Query: 473 DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQR 532
D +S +KLSLRDSM K++S L+V W++ PCFLNR++I LLSTLGI D +FE Q
Sbjct: 595 DRSSFRKLSLRDSMLKFDSNNRMLNVTRWTESMPCFLNREIICLLSTLGIEDAMFEAMQA 654
Query: 533 EAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKL 592
+ L +L D A L+ +S + N+L ++L+ GY P +EP+LSMML+ S+L
Sbjct: 655 VHLSMLGNMLEDRDAALNVLQKLSGENSKNLLVKMLLQGYAPSSEPYLSMMLRVHHESQL 714
Query: 593 LELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF 652
EL+++ RI +P GR ++GC+DE L YGQV+V+++ + S F +
Sbjct: 715 SELKSRCRILVPKGRILIGCMDEMGILEYGQVYVRVTLTKAELKSRDQSYFRKI-DEETS 773
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMR 697
+V G VVV KNPCLHPGD+RVL A+ +DC++FPQKG R
Sbjct: 774 VVIGKVVVTKNPCLHPGDIRVLDAIYEVHFEEKGYLDCIIFPQKGER 820
>gi|75327281|sp|Q7XM31.1|RDR2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase 2; Short=OsRDR2
gi|32492169|emb|CAE04828.1| OSJNBb0048E02.13 [Oryza sativa Japonica Group]
Length = 1136
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 278/702 (39%), Positives = 420/702 (59%), Gaps = 23/702 (3%)
Query: 5 AVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQL 64
A W GV V G R+++ L H + Y+LE+ +E++ + L C M +L+QL
Sbjct: 127 ADAWDGVRAEVIPG--KRRVDLYLEHDSQRYKLEVLFEDMKDC-LGCTLDGMGA-ILLQL 182
Query: 65 LGAPRIFQKGIRSPDL--LYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
APRI I P + + F+ KE WVR DFTP+ G+ + L ++L
Sbjct: 183 NYAPRI-HTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGK 241
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQ 182
+ D ++ + + + + S ++VP+V P ++PYE+LF++N L+
Sbjct: 242 SALVSDILKSLPF-SGNLGELTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMH 300
Query: 183 NGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS 242
G + ++++ ++ + PV +S +K++ L+ CY P +++ Q Y
Sbjct: 301 MGKIVAKHVNADLFKALQ--ELPVDVS--RRIFEKMHKLESTCYGPLQFI--QQEAYSMK 354
Query: 243 RSK----PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRIS 298
RS + + L+ +RV +TPS+++ GPE V+N V++H +F+R++
Sbjct: 355 RSHNVLLSNEGEGEGERKLMKCYRVNITPSKIFCFGPEEEVTNYVVKHHSAYASDFVRVT 414
Query: 299 FIDEDLDKIHSTDLSPRGSSA--TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 356
F+DED K+ S +S R + +T +Y RILS L+ G IG + FEFLAFS+SQL
Sbjct: 415 FVDEDWSKLSSNAISARIEQGFFSKPFKTGLYYRILSILKKGFSIGPKNFEFLAFSASQL 474
Query: 357 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 416
R +S WMFAS L A IR WMG+F IR+V+K AAR+GQ FSSS++T V ++E+I
Sbjct: 475 RGNSVWMFASNASLNAGGIRRWMGHFENIRSVSKCAARMGQLFSSSRQTFEVLRWDVEVI 534
Query: 417 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPT 475
PD++I +KY+FSDGIGK+S FA++VA GL N PSAFQIRYGGYKGV+A DP
Sbjct: 535 PDIEITTDGSKYIFSDGIGKISLRFAKRVAHHVGLDPTNLPSAFQIRYGGYKGVIAIDPM 594
Query: 476 SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 535
SS LSLR SM+K+ESE L++ +WSK QPC++NR++ISLLSTLGI DEIF Q++ +
Sbjct: 595 SSIDLSLRPSMKKFESESRMLNITSWSKSQPCYVNREIISLLSTLGIRDEIFVAMQQDEM 654
Query: 536 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 595
R+ + +LT+ A L + G T ++L+ GY+P +EP+LSM+L+ + ++L ++
Sbjct: 655 RETEEMLTNKEVALSVLGKLG-GSETKTAVKMLLQGYEPSSEPYLSMILKAHQENRLTDI 713
Query: 596 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 655
RT+ +I +P GR ++GCLDET L YGQV+++I+ Q S F + + +V
Sbjct: 714 RTRCKIHVPKGRVLIGCLDETGVLEYGQVYIRITKNSKEQKDSNQSYFYNDDGKTATVV- 772
Query: 656 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
G V + KNPCLHPGD+RVL+A+ P L MVDC+VFPQ+G R
Sbjct: 773 GKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGER 814
>gi|315307478|gb|ADU04140.1| hypothetical protein [Gossypium hirsutum]
Length = 1147
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 286/702 (40%), Positives = 419/702 (59%), Gaps = 28/702 (3%)
Query: 8 WRGVNVTVNFGFGM---RKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQL 64
W GV G+ M R++ F + GE Y+L+ +++++E C LL+++
Sbjct: 127 WEGVR-----GWIMPERRRLEFWVWTDGECYKLDFLFDDLFETVGCCFDGSACNALLLRV 181
Query: 65 LGAPRIFQKGIRSPDLL--YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPY 122
APR ++K + P++ + + ++ KE D WVRTTDF+ IGQST E
Sbjct: 182 RYAPRTYRK-VSGPNVASKFSTDRYHICKEKFDFLWVRTTDFSRIKSIGQSTSFYWEFNA 240
Query: 123 RLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQ 182
+ D Y+E LE +S ++VP+V P L YEILF++N LV
Sbjct: 241 GFSISDMSTYLPCYREDIQSPSLEARGEFSSPSEIVPLVKFPSDSKLAYEILFQLNALVH 300
Query: 183 NGCVAGPLLDSNFYRLVD--PYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
++ +D++ ++ P V I L KL L+ CY P ++ +
Sbjct: 301 TQKISIAAVDTDLIGILSVLPVETAVMI------LQKLRLLQSPCYNPVSFVKAKLPTGK 354
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
R S + ++ HR +TP+++Y GPE+ +N V+++F +F+R++F+
Sbjct: 355 NFRIPLSVSERLKNHNVMSCHRALITPTKIYCLGPELETANYVVKNFAEYASDFMRVTFV 414
Query: 301 DEDLDKIHSTDLSPRGSSATDITR---TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 357
+ED K+ + +S G +R T+IY RILS L+NGI+IGD++F+FLAFS+SQLR
Sbjct: 415 EEDWSKLSANAIST-GVHLGVFSRPFKTKIYDRILSILQNGIVIGDKRFKFLAFSASQLR 473
Query: 358 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 417
+S WMFAS + A +IREWMG F++IR+++K A+R+GQ FSSS TL V + ++EII
Sbjct: 474 SNSVWMFASNDEVKAEDIREWMGCFKKIRSISKCASRMGQLFSSSMPTLVVPVQDVEIID 533
Query: 418 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 477
D++++ Y FSDGIGK+S FAR+VA KCGL ++ PSAFQIRYGGYKGVVA D S
Sbjct: 534 DIEVKTDGINYCFSDGIGKISLPFARQVAEKCGL-NHIPSAFQIRYGGYKGVVAVDRNSF 592
Query: 478 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 537
K+SLRDSM K+ES++ L+V WS+ PCFLNR++++L STLGI DE+FE+ Q E +
Sbjct: 593 WKMSLRDSMLKFESKVRMLNVTKWSESMPCFLNREIVTLFSTLGIKDEVFERMQEEQLCL 652
Query: 538 LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 597
L +LT+ A + L+ + + NIL E+L +P+ +P+LSMMLQ + L +L++
Sbjct: 653 LGKMLTNREAALDTLQSLGGVNSKNILVEMLQFD-EPNVQPYLSMMLQAHYENLLSDLKS 711
Query: 598 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 657
+ RIF+P GR ++GCLDET TLNYGQV++ I + S F + IV G
Sbjct: 712 RCRIFVPKGRILIGCLDETGTLNYGQVYLCIKMKKAELECADQSYFRKV-DEETAIVIGK 770
Query: 658 VVVAKNPCLHPGDVRVLKAVNVPALHH--MVDCVVFPQKGMR 697
VVV KNPCLHPGDVRVL+AV P L +VDC+VFP+KG R
Sbjct: 771 VVVTKNPCLHPGDVRVLEAVYEPQLEEKGLVDCLVFPEKGER 812
>gi|51989474|gb|AAU21243.1| putative RNA-dependent RNA polymerase RdRP2 [Nicotiana benthamiana]
Length = 1120
Score = 485 bits (1249), Expect = e-134, Method: Compositional matrix adjust.
Identities = 284/686 (41%), Positives = 412/686 (60%), Gaps = 19/686 (2%)
Query: 22 RKINFLLSHL-GEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDL 80
+ + F +SH GE YRLE+ + +I E C LL++L AP+++Q+ + P +
Sbjct: 139 KSLEFWVSHAKGECYRLEVQFGDIIET-CECSLEDEKTALLLKLKHAPKLYQR-VSGPGV 196
Query: 81 L--YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKE 138
+ S ++ +E + WVRTTDF+ IG S+ C E+ L D Y
Sbjct: 197 ASKFSSDRYHVCEEDCEFLWVRTTDFSAMKSIGCSSSPCWEIEDGLLSSDLLSGLPYCNN 256
Query: 139 SEDRFVL-ETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYR 197
VL E G YS S +LVP+ P + LPYEILF++N L+ ++ + ++
Sbjct: 257 DVMDLVLDEVGDIYSAS-ELVPLASFPSDLKLPYEILFQLNSLIHTHKISLGAVKTDLIE 315
Query: 198 LVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWL-TDQYRKYMTSRSKPSSPAISL-DD 255
++ + + + L K++ L+ C+EP ++ T + S+++PSS L +
Sbjct: 316 VL----SKLELDTAMMILQKMHKLQSTCFEPVPFIKTRLHVLGKNSKNQPSSSYSRLVNQ 371
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI--HSTDLS 313
++ VHRV VTPS+VY GPE+ SN ++++F +FLR++F++ED K+ ++ +S
Sbjct: 372 NMMSVHRVLVTPSKVYCLGPELETSNYIVKNFALHASDFLRVTFVEEDWGKLSPNAISMS 431
Query: 314 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAA 373
RT+IY RILS LR+G++IG ++F FLAFS+SQLR +S WMFAS + A
Sbjct: 432 VEQGIFAKPYRTKIYHRILSILRDGLVIGSKRFLFLAFSASQLRSNSVWMFASNEHVKAE 491
Query: 374 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 433
+IREWMG F +IR+V+K AAR+GQ FS+S +T+ V +EI+PD+++ Y FSDG
Sbjct: 492 DIREWMGCFNKIRSVSKCAARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDG 551
Query: 434 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESEL 493
IGK+S FA +VA KCGL PSAFQIRYGGYKGV+A D S +KLSLR SM K+ES+
Sbjct: 552 IGKISQAFASQVAQKCGLS-YTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKN 610
Query: 494 TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE 553
L++ WS PC+LNR+++ LLSTLG+ D++FE + L +LT A + LE
Sbjct: 611 RMLNITKWSDAMPCYLNREIVILLSTLGVEDKVFEDLLDNHLHLLGKMLTTNEAALDVLE 670
Query: 554 LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 613
+ G+ IL +L GY P+ EP+LSMMLQ+ ++L +LR++ RIFI GR ++GCL
Sbjct: 671 SIGGGDVKKILMRMLHQGYAPNLEPYLSMMLQSHFENQLSDLRSRCRIFIHKGRVLVGCL 730
Query: 614 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 673
DET LNYGQV+ +I+ + S F +V+G VVV KNPCLHPGDVRV
Sbjct: 731 DETGILNYGQVYARITMTKAELQSAQQSFFQKV-DETTAVVRGNVVVTKNPCLHPGDVRV 789
Query: 674 LKAVNVPALHHM--VDCVVFPQKGMR 697
L+AV AL VDC++FPQKG R
Sbjct: 790 LEAVYEVALEEKAWVDCIIFPQKGER 815
>gi|357117510|ref|XP_003560510.1| PREDICTED: probable RNA-dependent RNA polymerase 2-like
[Brachypodium distachyon]
Length = 1138
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 272/687 (39%), Positives = 415/687 (60%), Gaps = 24/687 (3%)
Query: 20 GMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQM--TKYLLIQLLGAPRIFQKGIRS 77
G R+++ L+H + Y+LE+ +E+I + C R + T +L+QL APRI
Sbjct: 139 GKRRVDLYLTHDSQRYKLEVLFEDIRD----CFRCSLDGTSAILLQLTYAPRI-HTAFSG 193
Query: 78 PDLL--YESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAY 135
P + + + KE WVR DFTP+ G+ + L ++L + +
Sbjct: 194 PAVYSRFTDDRLHACKEDAKFTWVRALDFTPNQSFGKCSTLVIKLDEDAPMLHILNGLPF 253
Query: 136 YKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNF 195
+ + + S +VP+V P G ++ YE+LF++N LV G + +++N
Sbjct: 254 SGVLGE-MAISSMDVVGPSSKVVPLVDCPHGCSVSYEVLFRLNSLVHTGKIVAKHVNANL 312
Query: 196 YRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDD 255
+ ++ + P+ IS +K+ L+ CYEP +++ + + +T + SS +
Sbjct: 313 FTFLE--QVPLHIS--RKIFEKMSKLESTCYEPLQFIESELK--LTQNALLSSKREG-EG 365
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
L+ +R+ +TPS++Y GP+ SN V++H +F+R++F+DED K+ +S R
Sbjct: 366 KLMRCYRIHITPSKIYCLGPQEEASNYVVKHHSEYASDFVRVTFVDEDWSKLSVNAISAR 425
Query: 316 GSSA--TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAA 373
+ +T +Y RILS L+ G +IG +KF+FLAFS+SQLRE S WMFAS L A
Sbjct: 426 IEQGFFSQPFKTGLYYRILSILKEGFIIGPKKFKFLAFSASQLREGSVWMFASNDSLNAE 485
Query: 374 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 433
IR WMG+F EI +V+K AAR+GQ FSSS++T+ V ++E IPD+++ KY+FSDG
Sbjct: 486 GIRRWMGHFEEICSVSKCAARMGQLFSSSRQTVEVRPKDVEEIPDIEVITNNMKYIFSDG 545
Query: 434 IGKVSAEFARKVASKCGL-KDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESE 492
IGK+S FA+++A + GL NPPSAF+IR+GGYKGV+A DP+S + LSLR SMRK+ES+
Sbjct: 546 IGKMSVRFAKEIAYRIGLDHKNPPSAFEIRFGGYKGVIAVDPSSYRNLSLRPSMRKFESD 605
Query: 493 LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
L++ +WSK QPC +NR++ISLLSTLGI DE+FE Q++ + +LD +LT+ A L
Sbjct: 606 CRMLNITSWSKSQPCHVNREIISLLSTLGIRDEVFELMQQDDMCELDEMLTNKEIALSVL 665
Query: 553 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 612
+ E T ++L+ GYKP +EP+L M+L+ + ++L ++R+K +I +P GR ++GC
Sbjct: 666 GKIGSAE-TKTAADMLLQGYKPISEPYLLMILKAHQDNRLTDIRSKFKIHVPKGRVLLGC 724
Query: 613 LDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 672
LDET L YGQV+++I+ Q E F + +V G V V+KNPCLHPGDVR
Sbjct: 725 LDETGILKYGQVYIRITKNNKEQKENEQPYFCKDDGKTVTLV-GKVAVSKNPCLHPGDVR 783
Query: 673 VLKAVNVPALH--HMVDCVVFPQKGMR 697
VL+AV LH +VDCVVFPQ+G R
Sbjct: 784 VLEAVCDLELHATKLVDCVVFPQRGER 810
>gi|302786286|ref|XP_002974914.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
gi|300157073|gb|EFJ23699.1| hypothetical protein SELMODRAFT_150191 [Selaginella moellendorffii]
Length = 834
Score = 483 bits (1244), Expect = e-133, Method: Compositional matrix adjust.
Identities = 266/559 (47%), Positives = 352/559 (62%), Gaps = 29/559 (5%)
Query: 143 FVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPY 202
VL G +S VP++ G LP E+ FK+N L+QNG V+ L F+ L+
Sbjct: 1 MVLRRGQPFSVRQLAVPVLSSTCGFDLPLEVEFKVNYLIQNGHVSPAGLTREFFGLLSEN 60
Query: 203 RAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSS---PAISLDDGLVY 259
+S AL L ++ C P+ Q R YM + ++ A++ D+ +Y
Sbjct: 61 TPAWCLS----ALSNLERCEKTCLNPA----SQIRNYMRTSNRRRERYLGAVAADESQIY 112
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V R+ VTP +VYF GPE+ SNRV RHF +DNFLR++F+DED D ++S LS S+
Sbjct: 113 VKRLLVTPLKVYFLGPELEESNRVTRHFSHKLDNFLRVTFVDEDFDSLNSYVLS----SS 168
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 379
T+T +Y R+L+ LR GI + + F+FLAFS+SQLRE+S WMFA +T IR+WM
Sbjct: 169 RGRTKTEVYYRLLAILRLGIKLCGKDFQFLAFSASQLRENSLWMFADDDEVTGEYIRQWM 228
Query: 380 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK-IEIGKTKYVFSDGIGKVS 438
G+F IRNVAK AAR+GQSFS+S TL V E+ + DV+ + KY FSDGIG +S
Sbjct: 229 GDFLSIRNVAKCAARMGQSFSTSTRTLDVPRGEVRQLSDVETFTMDGHKYCFSDGIGTIS 288
Query: 439 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDV 498
EFA +VA +C PSAFQIRYGGYKGVVA DP S KLSLR SM K+ SE T LDV
Sbjct: 289 REFATRVARRCR-ASTVPSAFQIRYGGYKGVVAVDPASCFKLSLRPSMSKFPSEQTTLDV 347
Query: 499 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 558
L ++Y P +LNR++ISLLSTL + D +FE+ Q V LD +L D + L ++ G
Sbjct: 348 LEKTRYIPSYLNREIISLLSTLEVPDGVFERMQAHQVELLDRMLLDSAATYDVLRVLYAG 407
Query: 559 ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 618
E +L +++ G+ P EP++ +LQ FRA++LL L K+RIF+P GR +MGCLDE R
Sbjct: 408 ECHKLLVSMVLAGFSPVTEPYMRSLLQAFRAAQLLSLEKKSRIFVPKGRLLMGCLDEQRV 467
Query: 619 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
L YGQ FVQ+ S L ++R+ Q F+V G VVVAKNPCLHPGDV VL+AV+
Sbjct: 468 LRYGQCFVQV-----------SPLQVTARN-QAFVVTGSVVVAKNPCLHPGDVLVLEAVD 515
Query: 679 VPALHHMVDCVVFPQKGMR 697
VP LHHMVDC+VFPQ+G R
Sbjct: 516 VPELHHMVDCIVFPQQGPR 534
>gi|302814495|ref|XP_002988931.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
gi|300143268|gb|EFJ09960.1| hypothetical protein SELMODRAFT_235652 [Selaginella moellendorffii]
Length = 755
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 239/451 (52%), Positives = 303/451 (67%), Gaps = 9/451 (1%)
Query: 250 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 309
A++ D+G +YV RV VTP +VYF GPE+ SNRV RHF +DNFLR++F+DED D + S
Sbjct: 14 AVAADEGQIYVKRVLVTPLKVYFIGPELEESNRVTRHFSHKLDNFLRVTFVDEDFDSLSS 73
Query: 310 TDLSP-RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 368
LS RG T T +Y R+L+ LR GI + + F+FLAFS+SQLRE+S WMFA
Sbjct: 74 YVLSSSRGR-----TNTEVYYRLLAILRLGIKLCGKDFQFLAFSASQLRENSLWMFADDD 128
Query: 369 GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT-K 427
+T IR+WMG+F IRNVAK AAR+GQSFS+S TL V E+ + DV+ + K
Sbjct: 129 EVTGEYIRQWMGDFLSIRNVAKCAARMGQSFSTSTRTLDVPRGEVRQLSDVETFTPEGHK 188
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMR 487
Y FSDGIG +S EFA +VA +C PSAFQIRYGGYKGVVA DP S KLSLR SM
Sbjct: 189 YCFSDGIGTISTEFATRVARRCR-ASTVPSAFQIRYGGYKGVVAVDPASCFKLSLRPSMS 247
Query: 488 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 547
K+ SE T LDVL ++Y P +LNR++ISLLSTL + DE+FE+ Q V LD +L D
Sbjct: 248 KFPSEQTTLDVLEKTRYIPSYLNREIISLLSTLEVPDEVFERMQAHQVELLDRMLLDSAA 307
Query: 548 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 607
+ L ++ GE +L +++ G+ P EP++ +LQ FRA++LL L K+RIF+P GR
Sbjct: 308 TYDVLRVLYAGECHKLLVSMVLAGFSPVTEPYMRSLLQAFRAAQLLSLEKKSRIFVPKGR 367
Query: 608 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR-QRFIVQGLVVVAKNPCL 666
+MGCLDE R L YGQ FVQ+S + E +R Q F V G VVVAKNPCL
Sbjct: 368 LLMGCLDEQRVLRYGQCFVQVSPLQGVPVEEEIHCDRGVTARNQAFAVTGSVVVAKNPCL 427
Query: 667 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
HPGDV VL+AV+VP LHHMVDC+VFPQ+G R
Sbjct: 428 HPGDVLVLEAVDVPELHHMVDCIVFPQQGPR 458
>gi|45861741|gb|AAS78669.1| RdRp1m truncated protein [Nicotiana benthamiana]
Length = 479
Score = 446 bits (1148), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/375 (58%), Positives = 287/375 (76%), Gaps = 15/375 (4%)
Query: 2 KKFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLL 61
KKFAVL +V++ FG G++KI F LS+ +Y+L+L YENIW++ LH P Q ++LL
Sbjct: 109 KKFAVL-GSKDVSIKFGIGLKKIYFFLSYGSSDYKLQLSYENIWQVVLHRPYGQKAQFLL 167
Query: 62 IQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELP 121
+QL GAPRI+++ E ++FFKE PDDQWVRTTDFTPS +IG S+ LC+E
Sbjct: 168 LQLFGAPRIYKR--------LEESCYSFFKETPDDQWVRTTDFTPS-WIGLSSSLCLEFH 218
Query: 122 YRLELPDFKENFAYYKESEDRFVLETGS--AYSRSLDLVPIVGPPDGIALPYEILFKINL 179
+ LP+F+E+F YYKES ++ +L TG ++S+ L LVPIV P+G+ LPY+ILFKI+
Sbjct: 219 NGIRLPNFRESFFYYKESGNQVILRTGFTFSFSQKLALVPIVHLPNGVDLPYKILFKISS 278
Query: 180 LVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKY 239
L+Q+GC G L+ NF++LVDP R +I+CIEHAL+KLY+LKECCY+P RWLT+QY +Y
Sbjct: 279 LIQHGCFPGVALNFNFFQLVDPRRR--NIACIEHALEKLYYLKECCYDPVRWLTEQYDEY 336
Query: 240 MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
+ R P SP+I+LDDGLVYV RV VTP +VYF GPE+NVSNRVLR++ DIDNFLR+SF
Sbjct: 337 LKRRQLPKSPSITLDDGLVYVRRVVVTPCKVYFSGPEVNVSNRVLRNYSEDIDNFLRVSF 396
Query: 300 IDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRES 359
+DE+ +KIHSTDL PR S+ + RT IY RILSTLRNG +IGD+KFEFLAFSSSQLR++
Sbjct: 397 VDEEWEKIHSTDLLPRASTGNGM-RTDIYLRILSTLRNGFVIGDKKFEFLAFSSSQLRDN 455
Query: 360 SAWMFASRYGLTAAE 374
S WMFASR GLTA +
Sbjct: 456 SVWMFASRPGLTAND 470
>gi|357466249|ref|XP_003603409.1| Rna-dependent RNA polymerase [Medicago truncatula]
gi|355492457|gb|AES73660.1| Rna-dependent RNA polymerase [Medicago truncatula]
Length = 1188
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 272/733 (37%), Positives = 399/733 (54%), Gaps = 67/733 (9%)
Query: 4 FAVLWRGVNVTVNFGFG----------MRKINFLLSHLGEEYRLELDYE------NIWEI 47
F V WRG + VNF R F +G++ ++ D++ +I EI
Sbjct: 135 FTVAWRGCDKGVNFLVDPFDKICKICFNRDTAFSFKGIGKQAVIKCDFKVGFLIRDIEEI 194
Query: 48 ELHCPRWQMTKYL--LIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFT 105
+ R+ T +L L++L +P ++ + + D + ES + + DD W+RTTDFT
Sbjct: 195 Q----RYDDTSHLVVLLRLASSPLVWYRT--ADDDIDESVTIDLLDD--DDPWIRTTDFT 246
Query: 106 PSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDL-VPIVGP- 163
PS IG+ + +P R K ++ R L+ D VP+
Sbjct: 247 PSGAIGRCNYYRISIPPRHGAKLNKALEYLRRQRVPRIPLKRPPKIQNEPDFGVPMSDAF 306
Query: 164 ---PDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHAL---DK 217
+ ++I+F IN +V G L + F+ L+ V+++ ++H
Sbjct: 307 FYIDSQKDISFDIMFLINAIVHRGIFNQYSLSNKFFELLKNQPKDVNVAALKHICTYKHP 366
Query: 218 LYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEI 277
++ + +WL + Y S+ D ++ V R+ VTP++ Y PE+
Sbjct: 367 VFDAAKRLEAVQKWLLRNPKFYQISKQS---------DDVMEVRRLVVTPTKAYCISPEV 417
Query: 278 NVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTR 330
+SNRVLR FR D FLR++F+DE +++ L+ +S + +TRIY R
Sbjct: 418 ELSNRVLRRFREVSDRFLRVTFMDEGQQTLNNYALNYYVAPIVKEITSNSFQQKTRIYKR 477
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAK 390
+ + L +G RK+ FLAFSS+QLR+ SAW FA +T +IR WMG F + +NVAK
Sbjct: 478 VKTILDDGFYFCGRKYSFLAFSSNQLRDRSAWFFAEDKDITCDDIRNWMGRFNQ-KNVAK 536
Query: 391 YAARLGQSFSSSKETLSVHMDEIE-IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 449
AAR+GQ FSS+ ++ V +E+ ++PDV+ + YVFSDGIG ++ + A +VA K
Sbjct: 537 CAARMGQCFSSTYASVEVPANEVNSMLPDVE----RNNYVFSDGIGIITTDLAVEVAEKL 592
Query: 450 GLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPC 507
L D PSA+QIRY G+KGVVA P KLSLR SM K++S T L++ AW+++QP
Sbjct: 593 KL-DKAPSAYQIRYAGFKGVVACWPAKGDGIKLSLRPSMNKFQSTHTTLEICAWTRFQPG 651
Query: 508 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 567
FLNRQ+I+LLS L + DEIF K Q + L+ +L D A + L S E+ N +
Sbjct: 652 FLNRQIITLLSALDVPDEIFWKMQEGMISSLNQMLVDRDVAYDVL-TKSCAEHGNAAAIM 710
Query: 568 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 627
L CG+ P EP L ML + RA++L LR K+RIF+ +GR +MG LDE L GQ FVQ
Sbjct: 711 LSCGFSPKTEPHLRGMLNSIRAAQLWGLREKSRIFVSSGRWLMGVLDELGVLEQGQCFVQ 770
Query: 628 ISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 684
+S HG S FS +++ +V+G+VV+AKNPCLHPGDVRVL+AV+VP LHH
Sbjct: 771 VSTPSLENCFSKHG--SRFSETKTVH--VVKGIVVIAKNPCLHPGDVRVLEAVDVPDLHH 826
Query: 685 MVDCVVFPQKGMR 697
+ DCVVFPQKG R
Sbjct: 827 LYDCVVFPQKGER 839
>gi|167995454|gb|ACA13601.1| RNA-dependent RNA polymerase [Nicotiana attenuata]
Length = 1197
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 266/732 (36%), Positives = 401/732 (54%), Gaps = 62/732 (8%)
Query: 4 FAVLWRGVNVTVNFGF----GMRKINFL----LSHLGE--------EYRLELDYENIWEI 47
F V WRG V+F G KI F S GE +++E I EI
Sbjct: 147 FVVGWRGPRTGVDFLVDPFNGACKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINEI 206
Query: 48 ELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPS 107
+ C + + +L+QL +P +F + + D + ES F+ + DDQW+RTTD T S
Sbjct: 207 K-KCKDF-TSLVILLQLASSPLVFYR--TADDDIEESVAFDLLDD--DDQWIRTTDITGS 260
Query: 108 NFIGQSTGLCMELPYRLEL-----PDFKENFAYYK-------ESEDRFVLETGSAYSRSL 155
IG+ YR+ + P F++ AY+ E +R +L +
Sbjct: 261 GAIGRCN------TYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGV 314
Query: 156 DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHAL 215
+ + ++++F +N ++ G V + + F+ L+ ++ V+++ ++H
Sbjct: 315 SMSDPFFCFQNEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMF 374
Query: 216 DKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 275
+ + + + RK++ K LDD +V V R+ +TP++ Y P
Sbjct: 375 SYKWPVNDAIQK-----LVGIRKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPP 428
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIY 328
+ +SNRVLR+++ D FLR++F+DE + ++ L+ +S ++ RT I+
Sbjct: 429 TVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIF 488
Query: 329 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV 388
R+ S L G + RK+ FLAFS++QLR+ SAW FA + I WMG F RNV
Sbjct: 489 QRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNV 547
Query: 389 AKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
AK AAR+GQ FSS+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA
Sbjct: 548 AKCAARMGQCFSSTYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMISADLAVEVAE 603
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQ 505
K L NPPSA+QIRY G KGVVA PT + +LSLR SM+K++S T L++ +W+++Q
Sbjct: 604 KLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQ 663
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 565
P FLNRQ+++LLS+L + D IF + Q+E + LD +L D A + + S E N
Sbjct: 664 PGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVI-TASCAEAGNTAA 722
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
+L G+KP +EP L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F
Sbjct: 723 IMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCF 782
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
+Q+S + S + +V+GLVV+AKNPCLHPGDVR+L+AV+VP LHH+
Sbjct: 783 IQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHL 842
Query: 686 VDCVVFPQKGMR 697
DC+VFPQKG R
Sbjct: 843 YDCLVFPQKGDR 854
>gi|226596555|gb|ACO72600.1| RNA-dependent RNA polymerase 6 [Nicotiana glutinosa]
Length = 1197
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 269/735 (36%), Positives = 407/735 (55%), Gaps = 68/735 (9%)
Query: 4 FAVLWRGVNVTVNFGF----GMRKINF----LLSHLGE--------EYRLELDYENIWEI 47
F V WRG V+F G KI F + S GE +++E I EI
Sbjct: 147 FVVGWRGPRTGVDFLVDPFNGTCKILFTKDTVFSFRGEARHAIIKCNFKIEFLVREINEI 206
Query: 48 ELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPS 107
+ C + M+ +L+QL +P +F + + D + ES F+ + DDQW+RTTD T S
Sbjct: 207 K-KCKDF-MSLVILLQLASSPLVFYR--TADDDIEESVAFDLLDD--DDQWIRTTDITGS 260
Query: 108 NFIGQSTGLCMELPYRLEL-----PDFKENFAYYK-------ESEDRFVLETGSAYSRSL 155
IG+ YR+ + P F++ AY+ E +R +L +
Sbjct: 261 GAIGRCN------TYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGV 314
Query: 156 DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHAL 215
+ + +++LF N ++ G V + + F+ L+ ++ V+++ ++H
Sbjct: 315 SMSDPFFCFQNEGISFKVLFLANAVLHKGIVNQHQMINEFFYLLRSHQEEVNLAALKHMF 374
Query: 216 DKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 275
+ + + + + +K++ K LDD +V V R+ +TP++ Y P
Sbjct: 375 SYKWPVNDAIQKLA-----GIQKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPP 428
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIY 328
+ +SNRVLR+++ D FLR++F+DE + ++ L+ +S ++ RT I+
Sbjct: 429 TVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIF 488
Query: 329 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV 388
R+ S L G + RK+ FLAFS++QLR+ SAW FA + I WMG F RNV
Sbjct: 489 QRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNV 547
Query: 389 AKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
AK AAR+GQ FSS+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA
Sbjct: 548 AKCAARMGQCFSSTYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMISADLAIEVAE 603
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQ 505
K L NPP+A+QIRY G KGVVA PT + +LSLR SM+K++S T L++ +W+++Q
Sbjct: 604 KLHLSVNPPAAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQ 663
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 565
P FLNRQ+++LLS+L + D IF + Q+E + LD +L D A + + S E N
Sbjct: 664 PGFLNRQIVTLLSSLDVKDGIFWEMQKEMIAGLDKMLVDSDVAFDVI-TASCAEAGNTAA 722
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
+L G+KP +EP L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F
Sbjct: 723 LMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCF 782
Query: 626 VQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
+Q+S HG S FS + + +V+GLVV+AKNPCLHPGDVR+L+AV+VP+L
Sbjct: 783 IQVSSPSLENCFVKHG--SKFSDIKKNLQ-VVKGLVVIAKNPCLHPGDVRILEAVDVPSL 839
Query: 683 HHMVDCVVFPQKGMR 697
H+ DC+VFPQKG R
Sbjct: 840 SHLYDCLVFPQKGDR 854
>gi|194719815|emb|CAR47810.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 265/732 (36%), Positives = 399/732 (54%), Gaps = 62/732 (8%)
Query: 4 FAVLWRGVNVTVNFGF----GMRKINFL----LSHLGE--------EYRLELDYENIWEI 47
F V WRG V+F G KI F S GE +++E I EI
Sbjct: 147 FVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINEI 206
Query: 48 ELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPS 107
+ C + + +L QL +P +F + + D + ES F+ + DDQW+RTTD T S
Sbjct: 207 K-KCKDF-TSLVILFQLASSPLVFYR--TADDDIEESVAFDLLDD--DDQWIRTTDITGS 260
Query: 108 NFIGQSTGLCMELPYRLEL-----PDFKENFAYYK-------ESEDRFVLETGSAYSRSL 155
IG+ YR+ + P F++ AY+ E +R +L +
Sbjct: 261 GAIGRCN------TYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLRVKDEPDFGV 314
Query: 156 DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHAL 215
+ + ++++F +N ++ G V + + F+ L+ + V+++ ++H
Sbjct: 315 SMSDPFFCFQNEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNLAALKHMF 374
Query: 216 DKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 275
+ + + + +K++ K LDD +V V R+ +TP++ Y P
Sbjct: 375 SYKWPVNDAIQK-----LVGIQKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPP 428
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIY 328
+ +SNRVLR+++ D FLR++F+DE + ++ L+ +S ++ RT I+
Sbjct: 429 TVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIF 488
Query: 329 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV 388
R+ S L G + RK+ FLAFS++QLR+ SAW FA + I WMG F RNV
Sbjct: 489 QRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNV 547
Query: 389 AKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
AK AAR+GQ FSS+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA
Sbjct: 548 AKCAARMGQCFSSTYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMISADLAIEVAE 603
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK--LSLRDSMRKYESELTKLDVLAWSKYQ 505
K L NPPSA+QIRY GYKGVVA PT + LSLR SM+K++S T L++ +W+++Q
Sbjct: 604 KLHLNVNPPSAYQIRYAGYKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQ 663
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 565
P FLNRQ+++LLS+L + D IF + Q+E + LD +L D A + + S E N
Sbjct: 664 PGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVI-TASCAEAGNTAA 722
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
+L G+KP +EP L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F
Sbjct: 723 LMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCF 782
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
+Q+S + S + +V+GLVV+AKNPCLHPGDVR+L+AV+VP+L H+
Sbjct: 783 IQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHL 842
Query: 686 VDCVVFPQKGMR 697
DC+VFPQKG R
Sbjct: 843 YDCLVFPQKGDR 854
>gi|297748117|gb|ADI52625.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 265/732 (36%), Positives = 399/732 (54%), Gaps = 62/732 (8%)
Query: 4 FAVLWRGVNVTVNFGF----GMRKINFL----LSHLGE--------EYRLELDYENIWEI 47
F V WRG V+F G KI F S GE +++E I EI
Sbjct: 147 FVVGWRGPRTGVDFLVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFLVREINEI 206
Query: 48 ELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPS 107
+ C + + +L QL +P +F + + D + ES F+ + DDQW+RTTD T S
Sbjct: 207 K-KCKDF-TSLVILFQLASSPLVFYR--TADDDIEESVAFDLLDD--DDQWIRTTDITGS 260
Query: 108 NFIGQSTGLCMELPYRLEL-----PDFKENFAYYK-------ESEDRFVLETGSAYSRSL 155
IG+ YR+ + P F++ AY+ E +R +L +
Sbjct: 261 GAIGRCN------TYRISIRPRNGPSFEKAMAYFSFRRVPMVEMCNRKMLRVKDEPDFGV 314
Query: 156 DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHAL 215
+ + + +LF +N ++ G V + + F+ L+ ++ V+ + ++H
Sbjct: 315 SMSDPFFCFQNEGISFRVLFLVNAVLHKGIVNQHQMANEFFYLLRSHQEEVNSAALKHMF 374
Query: 216 DKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 275
+ + + + + +K++ K LDD +V V R+ +TP++ Y P
Sbjct: 375 SYKWPVNDAIQKLA-----GIQKWLLKNPKLLDRTGELDD-IVEVRRLVITPTKAYCLPP 428
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIY 328
+ +SNRVLR+++ D FLR++F+DE + ++ L+ +S ++ RT I+
Sbjct: 429 TVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIF 488
Query: 329 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV 388
R+ S L G + RK+ FLAFS++QLR+ SAW FA + I WMG F RNV
Sbjct: 489 QRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNV 547
Query: 389 AKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
AK AAR+GQ FSS+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA
Sbjct: 548 AKCAARMGQCFSSTYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMISADLAIEVAE 603
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQ 505
K L NPPSA+QIRY G KGVVA PT + +LSLR SM+K++S T L++ +W+++Q
Sbjct: 604 KLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQ 663
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 565
P FLNRQ+++LLS+L + D IF + Q+E + LD +L D A + + S E N
Sbjct: 664 PGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVI-TASCAEAGNTAA 722
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
+L G+KP +EP L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F
Sbjct: 723 LMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCF 782
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
+Q+S + S + +V+GLVV+AKNPCLHPGDVR+L+AV+VP+L H+
Sbjct: 783 IQVSSPSLENCFVKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHL 842
Query: 686 VDCVVFPQKGMR 697
DC+VFPQKG R
Sbjct: 843 YDCLVFPQKGDR 854
>gi|397529811|gb|AFO53516.1| RNA-dependent RNA polymerase 6 [Solanum lycopersicum]
Length = 1197
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 267/735 (36%), Positives = 404/735 (54%), Gaps = 68/735 (9%)
Query: 4 FAVLWRGVNVTVNFGFG----------MRKINFLLSHLGEE------YRLELDYENIWEI 47
F V WRG + VNF R F G+ +++E I EI
Sbjct: 147 FVVGWRGPHSGVNFLVDPFNGKCKILFTRDTAFCFKGEGKHAVIKCNFKIEFLLREINEI 206
Query: 48 ELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPS 107
C + + LL+QL +P +F + + D + ES F+ + DDQW+RTTD T S
Sbjct: 207 N-ECKDFS-SLVLLLQLASSPLVFYR--TADDDIEESVAFDLLDD--DDQWIRTTDITFS 260
Query: 108 NFIGQSTGLCMELPYRLEL-----PDFKENFAYYKESEDRFVLETGSAYSR---SLDLVP 159
IG+ YR+ + P FK+ Y++ES V+E G R D
Sbjct: 261 GAIGRFN------TYRVSIRPRNGPSFKKAMNYFRESRVP-VVEQGEQMLRVRNEPDFGE 313
Query: 160 IVGPP-------DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIE 212
V P +GI+ +++LF +N ++ G V + + F+ L+ ++ V+++ ++
Sbjct: 314 SVSEPFFCFQNHEGIS--FKVLFLVNAVLHKGIVNQHQMTAEFFSLLRKHQEGVNLAALK 371
Query: 213 HALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYF 272
H ++ K + R L +K++ + LDD +V V R+ +TP++ Y
Sbjct: 372 H----IFSYKRPVNDAIRKLA-SVQKWLFNNPNLLERTGQLDD-VVEVRRLVITPTKAYC 425
Query: 273 CGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRT 325
P + +SNRVLR ++ D FLR++F+DE + ++ L+ +S+++ RT
Sbjct: 426 LPPTVELSNRVLRKYKHISDRFLRVTFMDEGMRNLNRNALTYYAANIVREITSSSNPQRT 485
Query: 326 RIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI 385
I+ R+ + G + R++ FLAFS++QLR+ SAW FA + I WMG F
Sbjct: 486 GIFQRVKIIVNKGFYLCGRRYSFLAFSANQLRDRSAWFFAETPEIRVTSIINWMGKFGN- 544
Query: 386 RNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARK 444
RNVAK AAR+GQ FSS+ T+ V E+ +PD++ + YVFSDGIG ++A+ + +
Sbjct: 545 RNVAKCAARMGQCFSSTYATVEVLPSEVNSELPDIE----RNGYVFSDGIGMMTADLSIE 600
Query: 445 VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWS 502
VA+K L NPP A+QIRY G KGVVA P +LSLR SM+K++S T L++ +W+
Sbjct: 601 VAAKLQLSVNPPCAYQIRYAGCKGVVACWPAEKDGIRLSLRPSMKKFDSNHTILEICSWT 660
Query: 503 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN 562
+ QP FLNRQ+I+LLS+L + DE+F + Q+E + +LD IL D A + + S E N
Sbjct: 661 RLQPGFLNRQIITLLSSLEVKDEMFWEMQKEMLSKLDKILVDSDVAFDVI-TASCAEAGN 719
Query: 563 ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 622
+L G+KP +EP L ML + RA++L +LR KTR+F+ +GR +MGCLDE L G
Sbjct: 720 TAAIMLSAGFKPQSEPHLRGMLASIRAAQLGDLRNKTRMFVTSGRWLMGCLDELGELEQG 779
Query: 623 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
Q F+Q+S + S + +V+GLVV+AKNPCLHPGDVR+L+AV+VP L
Sbjct: 780 QCFIQVSSPSLETCFVKHGPEFSEIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGL 839
Query: 683 HHMVDCVVFPQKGMR 697
HH+ DC+VFPQKG R
Sbjct: 840 HHLYDCLVFPQKGDR 854
>gi|51989472|gb|AAU21242.1| putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana]
Length = 1197
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 263/732 (35%), Positives = 398/732 (54%), Gaps = 62/732 (8%)
Query: 4 FAVLWRGVNVTVNFGF----GMRKINFL----LSHLGE--------EYRLELDYENIWEI 47
F V WRG V+F G KI F S GE +++E I EI
Sbjct: 147 FVVGWRGPRTGVDFFVDPFNGACKILFTKDTAFSFRGEAKHAIIKCNFKIEFMVREINEI 206
Query: 48 ELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPS 107
+ + +L+QL +P +F + + D + ES F+ + DDQW+RTTD T S
Sbjct: 207 KKFKDFTSLV--ILLQLASSPLVFYR--TADDDIEESVAFDLLDD--DDQWIRTTDITGS 260
Query: 108 NFIGQSTGLCMELPYRLEL-----PDFKENFAYYK-------ESEDRFVLETGSAYSRSL 155
IG+ YR+ + P F++ AY+ E +R +L +
Sbjct: 261 GAIGRCN------TYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVRDEPDFGV 314
Query: 156 DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHAL 215
+ + ++++F +N ++ G V + + F+ L+ ++ V+++ ++H
Sbjct: 315 SMSDPFFCFQNEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSHQEEVNLAALKHMF 374
Query: 216 DKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 275
+ + + + +K++ K LDD +V V R+ +TP++ Y P
Sbjct: 375 SYKWPVNDAIQK-----LVGIQKWLLKNPKLLERTGELDD-IVEVRRLVITPTKAYCLPP 428
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIY 328
+ +SNRVLR+++ D FLR++F+DE + ++ L+ +S ++ RT I+
Sbjct: 429 TVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIF 488
Query: 329 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV 388
R+ S L G + RK+ FLAFS++QLR+ SAW FA + I WMG F RNV
Sbjct: 489 QRVKSILSRGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNV 547
Query: 389 AKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
AK AAR+GQ FSS+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA
Sbjct: 548 AKCAARMGQCFSSTYATVEVPSSEVNSELPDIE----RNGYVFSDGIGMISADLALEVAE 603
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK--LSLRDSMRKYESELTKLDVLAWSKYQ 505
K L NPPSA+QIRY G KGVVA PT + LSLR SM+K++S T L++ +W+++Q
Sbjct: 604 KLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGILLSLRPSMKKFDSNHTILEICSWTRFQ 663
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 565
P FLNRQ+++LLS+L + D IF + Q+E + L+ +L D A + + S E N
Sbjct: 664 PGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLNKMLVDSDVAFDVIT-ASCAEAGNTAA 722
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
+L G+KP +EP L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F
Sbjct: 723 IMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCF 782
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
+Q+S + S + +V+GLVV+AKNPCLHPGDVR+L+AV+VP LHH+
Sbjct: 783 IQVSSPSLENCFIKHGPKFSDIKKNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPGLHHL 842
Query: 686 VDCVVFPQKGMR 697
DC+VFPQKG R
Sbjct: 843 YDCLVFPQKGDR 854
>gi|163930853|dbj|BAF96019.1| RNA-dependent RNA polymerase 6 [Nicotiana tabacum]
Length = 1197
Score = 407 bits (1046), Expect = e-110, Method: Compositional matrix adjust.
Identities = 264/732 (36%), Positives = 399/732 (54%), Gaps = 62/732 (8%)
Query: 4 FAVLWRGVNVTVNFGF----GMRKINFL----LSHLGE--------EYRLELDYENIWEI 47
F V WRG V+F G KI F S GE +++E I EI
Sbjct: 147 FVVGWRGPRTGVDFFVDPFNGTCKILFTKDTAFSFRGEARHAIIKCNFKIEFMVREINEI 206
Query: 48 ELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPS 107
+ C + + +L+QL +P +F + + D + ES F+ + DDQW+RTTD T S
Sbjct: 207 K-KCKDF-TSLVILLQLASSPLVFYR--TADDDIEESVAFDLLDD--DDQWIRTTDITGS 260
Query: 108 NFIGQSTGLCMELPYRLEL-----PDFKENFAYYK-------ESEDRFVLETGSAYSRSL 155
IG+ YR+ + P F++ AY+ E +R +L +
Sbjct: 261 GAIGRCN------TYRISIRPRNGPSFEKAMAYFSFHRVPMVEMCNRKMLRVKDEPDFGV 314
Query: 156 DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHAL 215
+ + ++++F +N ++ G V + + F+ L+ + V+ + ++H
Sbjct: 315 SMSDPFFCFQNEGISFKVMFLVNAVLHKGIVNQHQMTNEFFYLLRSRQEEVNSAALKHMF 374
Query: 216 DKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 275
+ + + + +K++ K LDD +V V R+ +TP++ Y P
Sbjct: 375 SYKWPVNDAIQK-----LVGIQKWLLKNPKLLDRTGELDD-IVEVRRLVITPTKAYCLPP 428
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG-------SSATDITRTRIY 328
+ +SNRVLR+++ D FLR++F+DE + ++ L+ +S ++ RT I+
Sbjct: 429 TVELSNRVLRNYKHVADRFLRVTFMDEGMRNLNRNVLTYYAATIVREITSNSNPQRTAIF 488
Query: 329 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV 388
R+ S L G + RK+ FLAFS++QLR+ SAW FA + I WMG F RNV
Sbjct: 489 QRVKSILSKGFHLCGRKYSFLAFSANQLRDRSAWFFAEDPKIRVPGIISWMGRFSN-RNV 547
Query: 389 AKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
AK AAR+GQ FSS+ T+ V E+ +PD++ + YVFSDGIG +SA+ A +VA
Sbjct: 548 AKCAARMGQCFSSTYATVEVPSREVNSELPDIE----RNGYVFSDGIGMISADLAIEVAE 603
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQ 505
K L NPPSA+QIRY G KGVVA PT + +LSLR SM+K++S T L++ +W+++Q
Sbjct: 604 KLHLSVNPPSAYQIRYAGCKGVVACWPTKNDGIRLSLRPSMKKFDSNHTILEICSWTRFQ 663
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 565
P FLNRQ+++LLS+L + D IF + Q+E + LD +L D A + + S E N
Sbjct: 664 PGFLNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVI-TASCAEAGNTAA 722
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
+L G+KP +EP L ML + RAS+L +LR K RIF+P+GR +MGCLDE L GQ F
Sbjct: 723 IMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDELGELEQGQCF 782
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
+Q+S + S + +V+GLVV+AKNPCLHPGDVR+L+AV+VP+L H+
Sbjct: 783 IQVSSPSLENCFVKHGPKFSDIKQNLQVVKGLVVIAKNPCLHPGDVRILEAVDVPSLSHL 842
Query: 686 VDCVVFPQKGMR 697
DC+VFPQKG R
Sbjct: 843 YDCLVFPQKGDR 854
>gi|224141893|ref|XP_002324295.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222865729|gb|EEF02860.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1200
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 251/665 (37%), Positives = 375/665 (56%), Gaps = 52/665 (7%)
Query: 60 LLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCME 119
LL+QL AP ++ R+ D E+ V F DD W+RTTDFT S IG+ +
Sbjct: 218 LLLQLASAPWVW---YRTADDDIEAWV-PFDLLDDDDPWIRTTDFTASGAIGRCHSYRVS 273
Query: 120 LPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPP-----------DGIA 168
+P R ++ Y KE + + E + P G P +GIA
Sbjct: 274 IPPR-HGSKLRKAVKYLKERRVQVLQEENHRRRIRILDEPDFGMPMSDPFFCIHHKEGIA 332
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
+E+LF +N ++ G L ++F+ L+ V++S ++H C Y
Sbjct: 333 --FEVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQHTEVNVSALKHI---------CTYR- 380
Query: 229 SRWLTDQYRK------YMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 282
R + + YR+ ++ L D +V + R+ +TP++ Y PE+ +SNR
Sbjct: 381 -RPVFNAYRRLKAVQEWLLKNPNLFKNPKQLGD-VVEIRRLVITPTKAYCLPPEVELSNR 438
Query: 283 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT-DIT------RTRIYTRILSTL 335
VLR ++ D FLR++F+DE L +++S L+ + DIT +TRI+ R+ S L
Sbjct: 439 VLRKYKDVADRFLRVTFMDEGLQRMNSNVLNYYVAPIVRDITSNSFPQKTRIFKRVRSIL 498
Query: 336 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARL 395
G + R++ FLAFS++QLR+ SAW F+ ++ +++ WMG F RN+AK AAR+
Sbjct: 499 TEGFYLCGRRYSFLAFSANQLRDQSAWFFSEERNISVLDVKSWMGKFTN-RNIAKCAARM 557
Query: 396 GQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 454
GQ FSS+ T+ V +E+ +PD++ + YVFSDGIG ++ + AR+VA K L +
Sbjct: 558 GQCFSSTYATIEVPPEEVNSDLPDIE----RNGYVFSDGIGIITPDLAREVAEKLKLDID 613
Query: 455 PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 512
PP A+QIRY G KGVVA P +LSLR SM K++S T L++ +W+++QP FLNRQ
Sbjct: 614 PPCAYQIRYAGCKGVVACWPGKGDGVRLSLRPSMNKFQSNHTTLEICSWTRFQPGFLNRQ 673
Query: 513 LISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGY 572
+I+LLSTL + D +F K Q V +L+ + + A + L S + N+ +L G+
Sbjct: 674 IITLLSTLNVPDAVFWKMQETMVSKLNQMFVNSDVAFDVL-TASCADQGNVAAIMLSAGF 732
Query: 573 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 632
KPD EP L ML RA++L +LR KTRIF+P+GR +MGCLDE L GQ F+Q+S +
Sbjct: 733 KPDREPHLRGMLTCVRAAQLWDLREKTRIFVPSGRWLMGCLDELGMLEQGQCFIQVSNSS 792
Query: 633 YRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFP 692
+ + S + +++G VV+AKNPCLHPGDVRVL+AV+VP LHH+ DC+VFP
Sbjct: 793 LEKCFMKHGAKFSEAEKNLQVIKGTVVIAKNPCLHPGDVRVLEAVDVPGLHHLYDCLVFP 852
Query: 693 QKGMR 697
QKG R
Sbjct: 853 QKGER 857
>gi|295885030|gb|ADG57590.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
gi|295885034|gb|ADG57592.1| RNA-dependent RNA polymerase 6 [Gossypium hirsutum]
Length = 1196
Score = 404 bits (1037), Expect = e-109, Method: Compositional matrix adjust.
Identities = 251/647 (38%), Positives = 373/647 (57%), Gaps = 44/647 (6%)
Query: 77 SPDLLYESPVFNFFKEVP------DDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFK 130
SP + Y + +F K VP DDQW+RTTDFT S IG+ + + R L K
Sbjct: 225 SPWVWYRTADDDFEKTVPFGLLDDDDQWIRTTDFTASGAIGRCNTYRVLVRPRHGL-KLK 283
Query: 131 ENFAYYKES----ED---RFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQN 183
+ Y +E ED + + + RS+ +GI P+EI+F +N ++
Sbjct: 284 KAMDYLRERRVPVEDLRSQLRIRDEPDFGRSMSDHFYYIYKEGI--PFEIMFLVNAVLHK 341
Query: 184 GCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSR 243
G L +F+RL+ V+++ ++H +Y + Y+ L D + + +
Sbjct: 342 GIFNQHQLSMDFFRLLRNQSMEVNVAALKH----IYSYRHPVYDAYERLKDVHDWLLKNP 397
Query: 244 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 303
SP LDD +V + R+ +TP++ Y PE+ +SNRVLR ++ D FLR++F+DE
Sbjct: 398 KLFKSPP-QLDD-IVEIRRLVITPTKAYCLLPEVELSNRVLRKYKDVADRFLRVTFMDEG 455
Query: 304 LDKIHSTDLSPRGSSAT-DIT------RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 356
+ +++ L+ ++ D+T +T ++ R+ S L +G + RK+ FLAFS++QL
Sbjct: 456 MQIMNANVLTYYNAAIVRDVTSTSFSQKTGVFKRVKSILTDGFYLCGRKYSFLAFSANQL 515
Query: 357 RESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI- 415
R+ +AW FA + +I WMG F RN+AK AAR+GQ FSS+ T+ V ++ +
Sbjct: 516 RDRAAWFFAEDGKINVLQIIGWMGKFTN-RNIAKCAARMGQCFSSTYATVEVPSGQVNMH 574
Query: 416 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 475
+PD+K + Y FSDGIGK++ + A +VA K L NPP A+QIRY G KGVVA P
Sbjct: 575 LPDIK----RNGYDFSDGIGKITPDLAMEVAQKLKLDLNPPCAYQIRYAGCKGVVACWPE 630
Query: 476 SSKK--LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQRE 533
+ LSLR SM K+ S T L++ +W+++QP FLNRQ+I+LLSTLG+ DE+F Q
Sbjct: 631 EGDRIRLSLRSSMIKFFSHHTTLEICSWTRFQPGFLNRQIITLLSTLGVPDEVFWGMQNS 690
Query: 534 AVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLL 593
V +LD +L D A E + + S GE + +L G+KP EP L ML RAS+L
Sbjct: 691 MVSKLDKVLVDTDAAFEVV-ISSCGEQGHTPAIMLSAGFKPQTEPHLRGMLTCVRASQLW 749
Query: 594 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL---HGESSLFSSSRSRQ 650
LR K+RIFI +GR +MG LDE L GQ F+Q+S + HG S F+ ++ +
Sbjct: 750 GLREKSRIFIHSGRWLMGVLDELGVLEQGQCFIQVSNPSLQNCFLKHG--SRFAETK-KN 806
Query: 651 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+++GLVV+AKNPCLHPGD+R+L+AV+ P LHH+ DC+VFPQKG R
Sbjct: 807 FEVIKGLVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGER 853
>gi|255548928|ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
Length = 1203
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 262/695 (37%), Positives = 384/695 (55%), Gaps = 65/695 (9%)
Query: 34 EYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEV 93
+++LE +I EI+ + + +L+QL AP ++ + D+ P +
Sbjct: 194 DFKLEFLVRDINEIKQYTDTSCLV--ILLQLASAPSVWYR-TADDDIEVLVPFDLLDDDD 250
Query: 94 PDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSR 153
P W+RTTDFTPS IG+ + +P R K + +E R V E R
Sbjct: 251 P---WIRTTDFTPSGAIGRCNSYRVSIPPR-HGAKLKRALNFLRE---RRVQE--DCLRR 301
Query: 154 SLDL-------VPIVGPPDGI----ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPY 202
L + +P+ P I + + ++F +N ++ G L +F+ L+
Sbjct: 302 PLHVTAEPEYEMPMSDPFFCIHHEEGVDFNLMFLVNAVMHKGIFNQHQLSDSFFDLLRNQ 361
Query: 203 RAPVSISCIEH-------ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDD 255
V+I+ + H D LK +WL + + +S+ LDD
Sbjct: 362 PLDVNIAALRHICSYKHPVFDAHKRLKAV----QQWLLKNPKLFRSSKQ--------LDD 409
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
+V + R+ +TP+R Y PE+ +SNRVLR ++ D FLR++F+DE L +++ L+
Sbjct: 410 -IVEIRRLAITPTRAYCLPPEVELSNRVLRRYKDIADQFLRVTFMDEGLQTMNANTLTYY 468
Query: 316 GSSAT-DIT------RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 368
+ DIT +TRI+ R+ S L +G + RK+ FLAFSS+QLR+ SAW FA
Sbjct: 469 CAPIVRDITSNSFSQKTRIFKRVKSILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDG 528
Query: 369 GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE-IEIIPDVKIEIGKTK 427
+ ++IR WMG F RN+AK AAR+GQ FSS+ T+ V E I +PD++ +
Sbjct: 529 KTSVSKIRNWMGKFTN-RNIAKCAARMGQCFSSTYATVEVPSAEAILDLPDIE----RNN 583
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT--SSKKLSLRDS 485
Y+FSDGIG ++ + A++VA K L+ NPP A+QIRY G KGVVA P +LSLR S
Sbjct: 584 YIFSDGIGMITPDLAKEVAEKLKLEVNPPCAYQIRYAGCKGVVACWPAHIDGIRLSLRVS 643
Query: 486 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
M K+ S T L++ +W+++QP FLNRQ+I+LLSTL + DEIF K Q V +L+ + D
Sbjct: 644 MNKFHSNHTTLEICSWTRFQPGFLNRQIITLLSTLDVPDEIFWKMQIVMVSKLNQMFMDA 703
Query: 546 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 605
A + + S E N +L G+ P EP L ML RA++L LR KTRIF+P+
Sbjct: 704 DVAFDVV-TASCAEQGNTAAIMLSAGFNPKTEPHLCGMLTCIRAAQLWGLREKTRIFVPS 762
Query: 606 GRSMMGCLDETRTLNYGQVFVQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAK 662
GR +MGCLDE L +GQ F+Q+S HG S FS S+ + + +V+G VVVAK
Sbjct: 763 GRWLMGCLDELGVLEHGQCFIQVSNPSLESCFWKHG--SRFSESKKKLQ-VVKGTVVVAK 819
Query: 663 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
NPCLHPGD+R+L+AV+ P LHH+ DC+VFPQKG R
Sbjct: 820 NPCLHPGDIRILEAVDAPELHHLHDCLVFPQKGDR 854
>gi|242080895|ref|XP_002445216.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
gi|241941566|gb|EES14711.1| hypothetical protein SORBIDRAFT_07g006150 [Sorghum bicolor]
Length = 1220
Score = 400 bits (1028), Expect = e-108, Method: Compositional matrix adjust.
Identities = 256/667 (38%), Positives = 370/667 (55%), Gaps = 49/667 (7%)
Query: 60 LLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCME 119
LL++L AP ++ + + D +++S F+ + DD W+RTTD T S IG+ C
Sbjct: 250 LLLRLSAAPLLYYRT--AADGVHQSVPFDLLDDDDDDPWIRTTDITASGAIGR----CWM 303
Query: 120 LPYRLEL-----PDFKENFAYYKESE-DRFVLETGSAYSRSLDLVPIVGPPDGI------ 167
YR+ P K+ AY KE V + GS R D P +
Sbjct: 304 --YRISFKTWFWPKMKDALAYMKEKRVPAVVCDIGSPGFRVHDEPEFGKPMQDLFLCVQH 361
Query: 168 --ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECC 225
L + +LF +N+LV G V L S F+ L+ V+++ + L + + + C
Sbjct: 362 VEELQFSVLFLVNVLVHKGIVNEHQLTSKFFSLLKREEEQVNVAALTELLGENSQVFDVC 421
Query: 226 YEPSRWLTDQYRKYMTSRSK---PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 282
W + ++ K P S D V R+ +TP+R Y P++ SNR
Sbjct: 422 -----WRLKNVQDWVAKNPKLIHPRSRGKVAGDYNAVVRRLVITPTRAYCMPPQVERSNR 476
Query: 283 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDIT-------RTRIYTRILSTL 335
V+RH+ D FLR++F+DE + +++ LS + +TRIY R+ + +
Sbjct: 477 VIRHYHHVADRFLRVTFMDEGMQLLNNNALSFHAAPIVQSMMSKLFQHKTRIYRRVHTLM 536
Query: 336 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARL 395
G + RK+ FLAFSS+Q+++ SAW FA TAA IREWMG F RNVAK+AAR+
Sbjct: 537 TKGFHLCGRKYSFLAFSSNQMKDRSAWFFAEEGTTTAATIREWMGQFPS-RNVAKHAARM 595
Query: 396 GQSFSSSKETLSVHMDEI-EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 454
G F+SS T+ +E+ E++ D++ + Y FSDGIGK++ + A +VA++ L D
Sbjct: 596 GLCFTSSYATVVTRPNEVNELLEDIE----RNGYNFSDGIGKITPDLAIEVAARLPLIDR 651
Query: 455 -PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 511
PPSA+QIRY G+KGV+A P + +LSLR SMRK+ES + ++V++W+K+QP FLNR
Sbjct: 652 YPPSAYQIRYAGFKGVIAVWPGQNDGIRLSLRPSMRKFESTHSVIEVVSWTKFQPAFLNR 711
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 571
Q+I LL +LG+ + IF + Q ++ LD IL+D A + + P E I + +L G
Sbjct: 712 QIIILLMSLGVPEAIFWEMQEAMLKNLDRILSDREIAYKVVTNSCP-ERGTIARLMLSAG 770
Query: 572 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 631
+ P EP L ML ++S+L L KT+IF+P GR +MGCLDE L GQ F+Q S
Sbjct: 771 FSPATEPHLKAMLLAIKSSQLKGLLKKTKIFVPKGRWLMGCLDELGILEQGQCFIQASSL 830
Query: 632 GYR-QLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVV 690
S FSS+ IV G VVVAKNPCLHPGDVRVL+AV+VP LHH+VDC+V
Sbjct: 831 SINNHFMKHGSRFSSANKNAVTIV-GTVVVAKNPCLHPGDVRVLEAVDVPELHHLVDCLV 889
Query: 691 FPQKGMR 697
FP+KG R
Sbjct: 890 FPKKGER 896
>gi|356515444|ref|XP_003526410.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 277/742 (37%), Positives = 403/742 (54%), Gaps = 82/742 (11%)
Query: 3 KFAVLWRGVNVTVNFGF----GM------RKINFLLSHLGEEYRLELDYE------NIWE 46
+F V WRG + V F GM R F + ++ ++ D++ +I E
Sbjct: 147 EFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIEKKAVIKCDFQVGFLVRDINE 206
Query: 47 IELHCPRWQMTKYL--LIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDF 104
I+ R+ T YL L+ L +P ++ R+ D E V F DD W+RTTDF
Sbjct: 207 IK----RYNDTSYLVVLLHLASSPWVW---YRTADDDIEESV-PFDLLDDDDPWIRTTDF 258
Query: 105 TPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPP 164
TPS IG+ + +P R + Y K + R+L+ P G P
Sbjct: 259 TPSGAIGRCNFYRISIPPR-HGAKLMKAMLYLKGQRVQMQELALKQTLRTLN-EPDFGVP 316
Query: 165 DGIA---------LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHAL 215
A + ++I+F +N +V G L F+ L+ ++++ ++H
Sbjct: 317 MSDAFFYIHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLKNQPKELNVAALKH-- 374
Query: 216 DKLYHLKECCYEPSR-------WLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPS 268
L K ++ ++ WL + Y S+ LDD +V V R+ +TPS
Sbjct: 375 --LCSYKRPVFDATKRLKIVQEWLLRNPKLYQISK--------QLDD-IVEVRRLVITPS 423
Query: 269 RVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATD 321
+ Y PE+ +SNRVLR FR D FLR++F+DE + I+ L+ +S +
Sbjct: 424 KAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSF 483
Query: 322 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGN 381
RT+IY R+ + L G RK+ FLAFSS+QLR+ SAW FA + +IR WMG
Sbjct: 484 SQRTKIYKRVKTILEQGFYFCGRKYSFLAFSSNQLRDRSAWFFAED-KIRCDDIRNWMGK 542
Query: 382 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIE-IIPDVKIEIGKTKYVFSDGIGKVSAE 440
F + RNVAK AAR+GQ FSS+ T+ V +E+ ++PDV+ + Y+FSDGIG ++ +
Sbjct: 543 FNQ-RNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVE----RNNYIFSDGIGVITHD 597
Query: 441 FARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDV 498
AR+VA K L DN PSA+QIRY G+KGVVA+ P +LSLR SM K++S L++
Sbjct: 598 LAREVAEKLKL-DNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEI 656
Query: 499 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 558
AW+++QP FLNRQ+I+LLS LG+ DE+F + Q + +L+ +L D A + L S
Sbjct: 657 CAWTRFQPGFLNRQIITLLSALGVPDEVFWQMQEAMLLKLNQMLVDADIAFDVL-TKSCA 715
Query: 559 ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 618
E+ N +L CG+ P EP L ML + RA++L LR K+RIF+ +GR +MG LDE+
Sbjct: 716 EHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDESGV 775
Query: 619 LNYGQVFVQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 675
L GQ FVQ+S HG S FS +++ +V+G V++AKNPCLHPGDVRVL+
Sbjct: 776 LEQGQCFVQVSTPSLENCFSKHG--SRFSETKNLH--VVKGFVIIAKNPCLHPGDVRVLE 831
Query: 676 AVNVPALHHMVDCVVFPQKGMR 697
AV+ P LHH+ DC+VFPQKG R
Sbjct: 832 AVDAPDLHHLNDCLVFPQKGDR 853
>gi|224089239|ref|XP_002308662.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222854638|gb|EEE92185.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 1198
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 262/739 (35%), Positives = 395/739 (53%), Gaps = 75/739 (10%)
Query: 3 KFAVLWRG-----------VNVTVNFGFGMRKINFLLSHLGE------EYRLELDYENIW 45
+F V WRG + T F F R F E ++++E +I
Sbjct: 147 EFFVGWRGPPTGVDFLVDPFDGTCRFCFS-RNTAFSFKSTAEHAVIKCDFKVEFLVRDIN 205
Query: 46 EIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFT 105
EI+ + + LL+QL APR++ + D+ P + P W+RTTDFT
Sbjct: 206 EIKQYTETSCLV--LLLQLASAPRVWYR-TADDDIEVSVPFDLLDDDDP---WIRTTDFT 259
Query: 106 PSNFIGQSTGLCMELPYRLELPDFKENFAYYKES--EDRFVLETGSAYSRSLDLVPIVGP 163
S IG+ + +P R P ++ + KE ++ ++ +P+ P
Sbjct: 260 ASGAIGRCHSYRVSIPPR-HGPKLRKAVDFLKERRVQEEYLRRPIRIRDEPDFGMPMTDP 318
Query: 164 ------PDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDK 217
+GIA +++LF +N ++ G L ++F+ L+ V+++ ++H
Sbjct: 319 FFCIHHKEGIA--FDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALKH---- 372
Query: 218 LYHLKECCYEPSRWLTDQYRK------YMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVY 271
Y R + D Y+K ++ K LDD + + R+ +TP++ Y
Sbjct: 373 -------IYPYRRPVFDAYKKLKVAQEWLLKNPKFFKNQKKLDD-IAEIRRLVITPTKAY 424
Query: 272 FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL----SPRGSSATDIT---R 324
PE+ +SNRVLR ++ D FLR++F+DE L ++S L +P + T + +
Sbjct: 425 CLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQK 484
Query: 325 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 384
TRI+ R+ S L G + R++ FLAFSS+QLR+ SAW FA + I+ WMG F
Sbjct: 485 TRIFKRVRSILTEGFYLCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTN 544
Query: 385 IRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFAR 443
+N+AK AAR+GQ FSS+ T+ V +E+ +PD+K + Y FSDGIG ++ + AR
Sbjct: 545 -KNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIK----RNGYDFSDGIGMITPDLAR 599
Query: 444 KVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAW 501
+VA K +PP A+QIRY G KGVVA P +LSLR SM K++S T L++ +W
Sbjct: 600 EVAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSW 659
Query: 502 SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT 561
+++QP FLNRQ+I+LLS L + D +F K Q V +L+ +L D A + L S E
Sbjct: 660 TRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQMLVDSDVAFDVL-TASCAEQG 718
Query: 562 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 621
N+ +L G+KP EP L ML RA++L LR K RIF+P+GR +MGCLDE L
Sbjct: 719 NVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQ 778
Query: 622 GQVFVQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
GQ F+Q+S + HG S FS ++ + +V+G VV+AKNPCLHPGD+R+L+AV+
Sbjct: 779 GQCFIQVSNSYLENCFVKHG--SKFSETKKNLQ-VVKGTVVIAKNPCLHPGDIRILEAVD 835
Query: 679 VPALHHMVDCVVFPQKGMR 697
P LHH+ DC+VFPQKG R
Sbjct: 836 APGLHHLYDCLVFPQKGER 854
>gi|356507732|ref|XP_003522618.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Glycine max]
Length = 1204
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 278/742 (37%), Positives = 400/742 (53%), Gaps = 82/742 (11%)
Query: 3 KFAVLWRGVNVTVNFGF----GM------RKINFLLSHLGEEYRLELDYE------NIWE 46
+F V WRG + V F GM R F + ++ ++ D++ +I E
Sbjct: 147 EFFVSWRGPDKGVKFLVDPFDGMCRFCFSRDTAFSFKGIDKKAVIKCDFQVGFLVRDINE 206
Query: 47 IELHCPRWQMTKYL--LIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDF 104
I R+ T YL L+ L +P ++ R+ D E V F DD W+RTTDF
Sbjct: 207 IR----RYNDTSYLVVLLHLASSPWVW---YRTADDDIEESV-PFDLLDDDDPWIRTTDF 258
Query: 105 TPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPP 164
TPS IG+ + +P R K Y + + + E + P G P
Sbjct: 259 TPSGAIGRCNFYRISIPPRHGAKLMKAML--YLKGQRVQIQELPLKQTLRTQNEPDFGMP 316
Query: 165 DGIA---------LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHAL 215
A + ++I+F +N +V G L F+ L+ ++++ ++H
Sbjct: 317 MSDAFFYVHFQKDIAFDIMFLVNAIVHKGIFNQHRLSDRFFELLRNQPKELNVAALKH-- 374
Query: 216 DKLYHLKECCYEPSR-------WLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPS 268
L K ++ ++ WL + Y S+ LDD +V V R+ VTPS
Sbjct: 375 --LCSYKRPVFDATKRLKIVQEWLLRNPKLYQISK--------QLDD-IVEVRRLVVTPS 423
Query: 269 RVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATD 321
+ Y PE+ +SNRVLR FR D FLR++F+DE + I+ L+ +S +
Sbjct: 424 KAYCIPPEVELSNRVLRKFREVSDCFLRVTFMDEGMQTINVNALNYYVAPIVKEITSNSF 483
Query: 322 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGN 381
+T+IY R+ + L G RK+ FLAFSS+QLR+ SAW FA + +IR WMG
Sbjct: 484 SQKTKIYKRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAED-KIRCDDIRNWMGK 542
Query: 382 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIE-IIPDVKIEIGKTKYVFSDGIGKVSAE 440
F + RNVAK AAR+GQ FSS+ T+ V +E+ ++PDV+ + Y+FSDGIG ++ +
Sbjct: 543 FNQ-RNVAKCAARMGQCFSSTYATVEVAANEVNSMLPDVE----RNNYIFSDGIGVITHD 597
Query: 441 FARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDV 498
AR+VA K L DN PSA+QIRY G+KGVVA+ P +LSLR SM K++S L++
Sbjct: 598 LAREVAEKLKL-DNVPSAYQIRYAGFKGVVASWPAKGDGVRLSLRPSMNKFQSTHNILEI 656
Query: 499 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 558
AW+++QP FLNRQ+I+LLS LG+ DEIF + Q + +L+ +L D A + L S
Sbjct: 657 CAWTRFQPGFLNRQIITLLSALGVPDEIFWQMQEAMLLKLNQMLVDADIAFDVL-TKSCA 715
Query: 559 ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 618
E+ N +L CG+ P EP L ML + RA++L LR K+RIF+ +GR +MG LDE
Sbjct: 716 EHGNAAAIMLSCGFSPLTEPHLRGMLTSTRAAQLWGLREKSRIFVSSGRWLMGVLDELGV 775
Query: 619 LNYGQVFVQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 675
L GQ FVQ+S HG S FS +++ +V+G VV+AKNPCLHPGDVRVL+
Sbjct: 776 LEQGQCFVQVSTPSLENCFSKHG--SRFSETKNLH--VVKGFVVIAKNPCLHPGDVRVLE 831
Query: 676 AVNVPALHHMVDCVVFPQKGMR 697
AV+ P LHH+ DC+VFPQKG R
Sbjct: 832 AVDAPDLHHLNDCLVFPQKGDR 853
>gi|242057591|ref|XP_002457941.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
gi|241929916|gb|EES03061.1| hypothetical protein SORBIDRAFT_03g022880 [Sorghum bicolor]
Length = 1207
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 259/693 (37%), Positives = 375/693 (54%), Gaps = 58/693 (8%)
Query: 34 EYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEV 93
+ +LE ++ E+ + +++ LLI+L AP ++ + + D ++ES F
Sbjct: 203 DVKLEFPVRDVAEVRV----FRLDCSLLIRLSAAPLVYYR--TADDDIHES--VPFDLLD 254
Query: 94 PDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFV--LETGSAY 151
DD W+RTTD TPS IG+ + R P + AY + DR V ++ G +
Sbjct: 255 DDDPWIRTTDITPSGAIGRCGAYRITFSPRF-WPKMERALAYMR---DRRVPIVDCGGGW 310
Query: 152 S---------------RSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFY 196
R DL V +G+ P +LF +N LV G + L F+
Sbjct: 311 GARRGLTVRDEPEFGERMQDLFFCVQHSEGLKFP--VLFLVNALVHKGVINQHHLTPEFF 368
Query: 197 RLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDG 256
L+ V+++ + + + + C L D+ +Y P + D
Sbjct: 369 GLLQRKEDDVNVAALREFWGDKFPVFDACGRLKN-LQDRVARY------PKLLRNKIGDD 421
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
V R+ VTP++ Y PE+ SNRV+RH+R D FLR++F+DE + ++S L+
Sbjct: 422 NSEVRRLVVTPTKAYCLPPEVERSNRVIRHYREVTDRFLRVTFMDEGMQLLNSNVLNFSA 481
Query: 317 S-------SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 369
+ S + + +T +Y RI + L G + RK+ FLAFSS+QLR+ SAW FA
Sbjct: 482 AQIVKDLMSNSFLHKTTVYKRIKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRM 541
Query: 370 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 429
T IR+WMG F +NVAK+AAR+GQ FSS+ T+ + E+ + E+ + Y+
Sbjct: 542 RTVETIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVVMQPHEVN---ECLEEVERNGYI 597
Query: 430 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA--DPTSSKKLSLRDSMR 487
FSDGIGK++ + A +VA K L DNPPSA+QIRY G+KGV+A +LSLR SM
Sbjct: 598 FSDGIGKITCDLALEVAQKLRLTDNPPSAYQIRYAGFKGVIAVWEGENDGIRLSLRPSMH 657
Query: 488 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 547
K+ES L+V++W+K+QP FLNRQ+I+LLS+L + D IF + Q + L+ IL+D
Sbjct: 658 KFESNHNVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQEAMLSNLNNILSDTDV 717
Query: 548 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 607
A + + S E N +L G P EP L ML R+S+LL L KTRIF+P GR
Sbjct: 718 AFDIV-TTSCAEQGNTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGR 776
Query: 608 SMMGCLDETRTLNYGQVFVQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNP 664
+MGCLDE L GQ F++ S HG FSS+ IV G +V+AKNP
Sbjct: 777 WLMGCLDELGILEQGQCFIRASSPSLNNCLVKHGPR--FSSANKNAETIV-GTIVMAKNP 833
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
CLHPGDVR+L+AV+VP LHH+VDC+VFP+KG R
Sbjct: 834 CLHPGDVRILEAVDVPELHHLVDCLVFPKKGER 866
>gi|357119219|ref|XP_003561343.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Brachypodium distachyon]
Length = 1208
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 258/668 (38%), Positives = 367/668 (54%), Gaps = 56/668 (8%)
Query: 60 LLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCME 119
LL++L APR++ + D+ P + P W+RTTD T S IG+ G+
Sbjct: 227 LLLRLTAAPRVYYR-TADDDIHVSVPFDLLDDDDP---WIRTTDITMSGAIGR-CGM--- 278
Query: 120 LPYRLELPDFK-----ENFAYYKESEDRFVLET-GSAYSRSL-------------DLVPI 160
YR+++ K AY K V T S R L DL
Sbjct: 279 --YRIKVAPRKWIMMDRALAYMKGQRVLIVESTVWSGPRRGLKVRDEPEFEEPMQDLFFC 336
Query: 161 VGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH 220
V +G+ P +LF +N LV G + L F L+ V+++ AL + +
Sbjct: 337 VQHAEGLKFP--VLFLVNALVHKGIINQHQLTPEFLSLLSGRDDDVNVA----ALKEFWG 390
Query: 221 LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVS 280
K + + L +R+ ++ S + D+ V V R+ +TP+ P+I +S
Sbjct: 391 DKFPVFNARKRLEHAHRRVASNPKLLRSGKVGDDN--VEVRRLVITPTSASCLPPQIELS 448
Query: 281 NRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR-------TRIYTRILS 333
NRVLRH+ D FLR++F+DE + +++ L+ + R T +Y R+
Sbjct: 449 NRVLRHYHEVADRFLRVTFMDEGMQSLNNNVLNFYTAPIVKALRPNSFQQKTAVYKRVKM 508
Query: 334 TLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAA 393
L G + RK+ FLAFSS+QLR+ SAW FA T IR+WMG F +NVAK+AA
Sbjct: 509 FLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDSKTTVESIRKWMGRFTS-KNVAKHAA 567
Query: 394 RLGQSFSSSKETLSVHMDEI-EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK 452
R+GQ FSS+ T+ V DE+ E + DV+ + Y FSDGIGK++ + A +VA K L
Sbjct: 568 RMGQCFSSTYATVMVKPDEVNESLEDVE----RNNYTFSDGIGKITPDLAMEVAEKLQLM 623
Query: 453 DNPPSAFQIRYGGYKGVVAA--DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLN 510
D+PPSA+QIRY GYKGV+A + +LSLR SM+K+ES+ + L+V++W+++QP FLN
Sbjct: 624 DSPPSAYQIRYAGYKGVIAVWQGNNNGIRLSLRPSMKKFESKHSVLEVVSWTRFQPGFLN 683
Query: 511 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLIC 570
RQ+I LLS+L + D+IF + Q + L+ IL D A E + S E N +L
Sbjct: 684 RQIILLLSSLNVSDDIFSQMQESMLFNLNKILLDSDVAFEVV-TTSCAEQGNTAALMLSA 742
Query: 571 GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISG 630
G+ P EP L ML R+++L +L KTRIF+P GR +MGCLDE L GQ FVQ S
Sbjct: 743 GFGPGTEPHLRGMLLAIRSAQLQDLLEKTRIFVPKGRWLMGCLDELGVLEQGQCFVQASA 802
Query: 631 AGY-RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 689
A R S FS++++ I+ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+
Sbjct: 803 ASLDRCFLKHGSRFSANKNTD--IIVGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCL 860
Query: 690 VFPQKGMR 697
VFPQKG R
Sbjct: 861 VFPQKGER 868
>gi|168067479|ref|XP_001785643.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162662723|gb|EDQ49541.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1049
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 258/692 (37%), Positives = 377/692 (54%), Gaps = 62/692 (8%)
Query: 34 EYRLELDYENIWEIELHCPRWQMTKYLLI-QLLGAPRIFQKGIRSPDLLYESPVFNFFKE 92
E++LEL + + +I+ R +M + +++ QL P I + + + +PV
Sbjct: 61 EFKLELSVKEVRKIQTQ--RGRMPEMMIVMQLFSPPLISYRTSQGDGVYCTTPV-----P 113
Query: 93 VPDDQ--WVRTTDFTPSNFIGQSTGLCMEL------PYRLELPDFKE---------NFAY 135
+PDD+ W+RT DF+P IG+ + + P+R + F E N +
Sbjct: 114 LPDDEDPWIRTVDFSPHRSIGRCLTYIISVRPTEYTPFRRMMDFFMEQRLCGSVLQNLNF 173
Query: 136 YKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNF 195
E D + G Y V G+ P+E++F +N LV G + L F
Sbjct: 174 LYEEID---CKKGQNYF-------FVHHQKGV--PFELMFLVNALVHRGIINMTSLTQEF 221
Query: 196 YRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDD 255
Y V RA VS+ ++H L + + Q +++ K +L
Sbjct: 222 YETVMSDRA-VSLFALQHMLTYTHPVFNAVLR-----VQQVQEWTRKNDKFRQGEKALAF 275
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-P 314
G + ++RV TP+R P ++ SNRVLRH+ D FLR+SF+DEDL +I L+ P
Sbjct: 276 GSILMYRVLFTPTRGICTLPVVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGSLTVP 335
Query: 315 RG------SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 368
SS + RT I+ RIL + NG + R++ FLAFSSSQ+R SAW FAS
Sbjct: 336 VSRSVRCLSSTYEYNRTEIHRRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFFASTG 395
Query: 369 GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 428
+ IR+WMG F +NVAKYAAR+GQ FS S TL V + +PDV + Y
Sbjct: 396 NVNTHLIRQWMGKFPS-QNVAKYAARMGQCFSCSFPTLPVLKAMVRKLPDVV----RNGY 450
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK--LSLRDSM 486
+FSDG G ++ +FA +V+ L D PS +QIRY GYKGVV+ P + L LRDSM
Sbjct: 451 IFSDGCGMIAPDFALRVSLSLKL-DYTPSVYQIRYAGYKGVVSTWPIPGRHSHLGLRDSM 509
Query: 487 RKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
+K+ES T+L+V+ WSKY PC+LNRQ+I LLSTL + + +F+ Q V +L A+L DP
Sbjct: 510 KKFESGHTELEVVNWSKYLPCYLNRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGDPN 569
Query: 547 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 606
+A E + S ++ + +L G+ P EP L +L + + S L +L +K RIF+PNG
Sbjct: 570 QAYEIVT-TSCSDSHSTAATMLRGGFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVPNG 628
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQ-LHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
R ++GC+DET LNYGQ F+ +SG + L G+ + S Q ++ G V++ KNPC
Sbjct: 629 RWVIGCMDETGLLNYGQCFIHVSGPVSKACLGGDGNNLGHSGLLQ--VITGKVIMVKNPC 686
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
LHPGD+R+L+AV++P LH MVDC+V PQ G R
Sbjct: 687 LHPGDIRILEAVDLPELHSMVDCLVLPQNGPR 718
>gi|106733035|gb|ABF82437.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens
subsp. patens]
gi|106733051|gb|ABF82438.1| putative RNA-dependent RNA polymerase 6 [Physcomitrella patens
subsp. patens]
Length = 1152
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 258/692 (37%), Positives = 377/692 (54%), Gaps = 62/692 (8%)
Query: 34 EYRLELDYENIWEIELHCPRWQMTKYLLI-QLLGAPRIFQKGIRSPDLLYESPVFNFFKE 92
E++LEL + + +I+ R +M + +++ QL P I + + + +PV
Sbjct: 154 EFKLELSVKEVRKIQTQ--RGRMPEMMIVMQLFSPPLISYRTSQGDGVYCTTPV-----P 206
Query: 93 VPDDQ--WVRTTDFTPSNFIGQSTGLCMEL------PYRLELPDFKE---------NFAY 135
+PDD+ W+RT DF+P IG+ + + P+R + F E N +
Sbjct: 207 LPDDEDPWIRTVDFSPHRSIGRCLTYIISVRPTEYTPFRRMMDFFMEQRLCGSVLQNLNF 266
Query: 136 YKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNF 195
E D + G Y V G+ P+E++F +N LV G + L F
Sbjct: 267 LYEEID---CKKGQNYF-------FVHHQKGV--PFELMFLVNALVHRGIINMTSLTQEF 314
Query: 196 YRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDD 255
Y V RA VS+ ++H L + + Q +++ K +L
Sbjct: 315 YETVMSDRA-VSLFALQHMLTYTHPVFNAVLR-----VQQVQEWTRKNDKFRQGEKALAF 368
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-P 314
G + ++RV TP+R P ++ SNRVLRH+ D FLR+SF+DEDL +I L+ P
Sbjct: 369 GSILMYRVLFTPTRGICTLPVVSRSNRVLRHYHTLSDRFLRVSFVDEDLHQISPGSLTVP 428
Query: 315 RG------SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 368
SS + RT I+ RIL + NG + R++ FLAFSSSQ+R SAW FAS
Sbjct: 429 VSRSVRCLSSTYEYNRTEIHRRILDIVENGFKLCGRQYSFLAFSSSQMRGGSAWFFASTG 488
Query: 369 GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 428
+ IR+WMG F +NVAKYAAR+GQ FS S TL V + +PDV + Y
Sbjct: 489 NVNTHLIRQWMGKFPS-QNVAKYAARMGQCFSCSFPTLPVLKAMVRKLPDVV----RNGY 543
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK--LSLRDSM 486
+FSDG G ++ +FA +V+ L D PS +QIRY GYKGVV+ P + L LRDSM
Sbjct: 544 IFSDGCGMIAPDFALRVSLSLKL-DYTPSVYQIRYAGYKGVVSTWPIPGRHSHLGLRDSM 602
Query: 487 RKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
+K+ES T+L+V+ WSKY PC+LNRQ+I LLSTL + + +F+ Q V +L A+L DP
Sbjct: 603 KKFESGHTELEVVNWSKYLPCYLNRQIICLLSTLKVENAVFKSLQDAQVARLKAMLGDPN 662
Query: 547 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 606
+A E + S ++ + +L G+ P EP L +L + + S L +L +K RIF+PNG
Sbjct: 663 QAYEIVT-TSCSDSHSTAATMLRGGFLPLKEPHLYELLVSIKFSLLEDLVSKARIFVPNG 721
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQ-LHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
R ++GC+DET LNYGQ F+ +SG + L G+ + S Q ++ G V++ KNPC
Sbjct: 722 RWVIGCMDETGLLNYGQCFIHVSGPVSKACLGGDGNNLGHSGLLQ--VITGKVIMVKNPC 779
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
LHPGD+R+L+AV++P LH MVDC+V PQ G R
Sbjct: 780 LHPGDIRILEAVDLPELHSMVDCLVLPQNGPR 811
>gi|206598331|gb|ACI16098.1| RNA-directed RNA polymerase 6a [Hordeum vulgare]
Length = 1047
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 258/697 (37%), Positives = 379/697 (54%), Gaps = 62/697 (8%)
Query: 34 EYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEV 93
+ +LE ++ E+ + +++ LL++L P ++ + + D +++S F
Sbjct: 33 DVKLEFPVRDVAEVRV----FKLDCSLLLRLSAVPLVYYRT--ADDDIHDS--VPFDLLD 84
Query: 94 PDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYS- 152
DD W+RTTD TPS IG+ + P R + AY E V E G +
Sbjct: 85 DDDPWIRTTDITPSGAIGRCRVYRIAFPARF-WSKMERALAYMGERRVTIV-ECGGGWGP 142
Query: 153 --------------RSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRL 198
R DL V G+ P +LF +N LV G V+ L FY L
Sbjct: 143 RRGLTVRDEPEFGERMQDLFFCVQHAQGLKFP--VLFLVNALVHKGVVSQHQLTPEFYGL 200
Query: 199 VDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLV 258
+ V+++ AL + + +K ++ R L + + + P + D
Sbjct: 201 LQRREDDVNVA----ALKEFWGIKFPVFDACRRLKNLQDRVARN---PKLLHSKIGDDHS 253
Query: 259 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 318
V R+ +TP+ Y P++ SNRV+RH+R D FL+++F+DE + +++S L+ S
Sbjct: 254 EVRRLVITPTTAYCLPPQVERSNRVVRHYRDAADRFLKVTFMDEGMQQLNSNVLN---FS 310
Query: 319 ATDITR-----------TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-- 365
A I + T +Y R+ + L G + RK+ FLAFSS+QLR+ SAW FA
Sbjct: 311 AAQIVKDLMSNSFLQHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAED 370
Query: 366 -SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKIEI 423
+ T IR+WMG F +NVAK+ AR+GQ FSS+ T+ +H E+ E + DV+
Sbjct: 371 RTDRTRTVESIRKWMGRFTS-KNVAKHTARMGQCFSSTYATVVMHPHEVNECLEDVE--- 426
Query: 424 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA--DPTSSKKLS 481
+ YVFSDGIGK++ E A +VA K L DNPPSA+QIRY G+KGV+A +LS
Sbjct: 427 -RNGYVFSDGIGKITQELALEVAKKLQLTDNPPSAYQIRYAGFKGVIAVWEGENDGIQLS 485
Query: 482 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 541
LR SM K+ES T L+V++W+K+QP FLNRQ+I+LLS+L + D IF + Q++ + L+ I
Sbjct: 486 LRPSMHKFESPHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFSQMQKDMLSNLNNI 545
Query: 542 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
LTD A + + S + N +L G P EP L +L R+++LL L K+RI
Sbjct: 546 LTDTDVAFDVV-TTSCADEGNTAALMLSAGILPGTEPHLKALLLAIRSTQLLGLLEKSRI 604
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQ-LHGESSLFSSSRSRQRFIVQGLVVV 660
F+P GR +MGCLDE L GQ F++ S L FSS+ + IV G VV+
Sbjct: 605 FVPKGRWLMGCLDELGILEQGQCFIRASSPVLNNSLVKHGPRFSSANNNAETIV-GTVVM 663
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
AKNPCLHPGDVR+L+A++VPALHH+VDC+VFP+ G R
Sbjct: 664 AKNPCLHPGDVRILEAIDVPALHHLVDCLVFPKNGER 700
>gi|296082033|emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 237/629 (37%), Positives = 353/629 (56%), Gaps = 56/629 (8%)
Query: 98 WVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDL 157
W+RTTDFT S IG+ + +P R K+ Y + VLE + +
Sbjct: 90 WIRTTDFTVSGAIGRCNSYRISIPPRYG-AKLKKAMDYLRARRVN-VLEDSPKWQLRVRD 147
Query: 158 VPIVGPP-----------DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPV 206
P G P +GI + ++F +N ++ G + L F+ L+ + +
Sbjct: 148 EPDFGLPMSDPFFCIQHKEGID--FRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDI 205
Query: 207 SISCIEHALDKLYHLKECCYEPSRWLTDQYR------KYMTSRSKPSSPAISLDDGLVYV 260
+I+ ++H C Y + D Y+ K++ K LDD +V V
Sbjct: 206 NIAALKHI---------CSYRHP--VFDAYQRLKLVHKWLLKNPKLLKSPKELDD-IVEV 253
Query: 261 HRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT 320
R+ +TPS+ Y PE+ +SNRVLR+++ D FLR++F+DE + I++ L+ +
Sbjct: 254 RRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIV 313
Query: 321 DI-------TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAA 373
+ +TR++ R+ + L +G + RK+ FLAFSS+QLR+ SAW FA +
Sbjct: 314 KVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVR 373
Query: 374 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 433
I+ WMG F RNVAK AAR+GQ FSS+ T+ V E++ +PD+K + Y FSDG
Sbjct: 374 AIKSWMGKFTN-RNVAKCAARMGQCFSSTYATVEVPSWEVKELPDIK----RNGYDFSDG 428
Query: 434 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYES 491
IGK+ + A +VA K L + PSA+QIRY G KGVVA P+ + +LS R SM K+ S
Sbjct: 429 IGKIVPDLAMEVAEKLKL-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLS 487
Query: 492 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 551
+ T L++ +W+++QP FLNRQ+++LLS L + D+IF K Q + +L+ +LTD A +
Sbjct: 488 DHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDV 547
Query: 552 LELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 611
L + S E N +L G+KP EP L ML RA++ LR K RIF+P+GR +MG
Sbjct: 548 L-IASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMG 606
Query: 612 CLDETRTLNYGQVFVQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
CLDE L GQ F+Q+S HG S FS+ ++ + +++G+V +AKNPCLHP
Sbjct: 607 CLDELGVLEQGQCFIQVSSPSLENCFLKHG--SRFSAQKNLK--VIKGIVAIAKNPCLHP 662
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GDVR+L+AV+ P L H+VDC+VFPQKG R
Sbjct: 663 GDVRILEAVDAPGLEHLVDCLVFPQKGDR 691
>gi|225430281|ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 237/629 (37%), Positives = 353/629 (56%), Gaps = 56/629 (8%)
Query: 98 WVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDL 157
W+RTTDFT S IG+ + +P R K+ Y + VLE + +
Sbjct: 252 WIRTTDFTVSGAIGRCNSYRISIPPRYG-AKLKKAMDYLRARRVN-VLEDSPKWQLRVRD 309
Query: 158 VPIVGPP-----------DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPV 206
P G P +GI + ++F +N ++ G + L F+ L+ + +
Sbjct: 310 EPDFGLPMSDPFFCIQHKEGID--FRVMFLVNAVMHKGIINQHQLSDKFFDLLRSQQKDI 367
Query: 207 SISCIEHALDKLYHLKECCYEPSRWLTDQYR------KYMTSRSKPSSPAISLDDGLVYV 260
+I+ ++H C Y + D Y+ K++ K LDD +V V
Sbjct: 368 NIAALKHI---------CSYRHP--VFDAYQRLKLVHKWLLKNPKLLKSPKELDD-IVEV 415
Query: 261 HRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT 320
R+ +TPS+ Y PE+ +SNRVLR+++ D FLR++F+DE + I++ L+ +
Sbjct: 416 RRLVITPSKAYCLPPEVELSNRVLRNYKEVSDRFLRVTFMDEGMQTINANVLNYYVAPIV 475
Query: 321 DI-------TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAA 373
+ +TR++ R+ + L +G + RK+ FLAFSS+QLR+ SAW FA +
Sbjct: 476 KVITSNSFPQKTRVFKRVKTILTDGFYLCGRKYSFLAFSSNQLRDRSAWFFAEDKKTSVR 535
Query: 374 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 433
I+ WMG F RNVAK AAR+GQ FSS+ T+ V E++ +PD+K + Y FSDG
Sbjct: 536 AIKSWMGKFTN-RNVAKCAARMGQCFSSTYATVEVPSWEVKELPDIK----RNGYDFSDG 590
Query: 434 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYES 491
IGK+ + A +VA K L + PSA+QIRY G KGVVA P+ + +LS R SM K+ S
Sbjct: 591 IGKIVPDLAMEVAEKLKL-EGTPSAYQIRYAGCKGVVACWPSDNDGIRLSWRPSMNKFLS 649
Query: 492 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 551
+ T L++ +W+++QP FLNRQ+++LLS L + D+IF K Q + +L+ +LTD A +
Sbjct: 650 DHTILEICSWTRFQPGFLNRQIVTLLSALNVPDKIFWKMQESMISKLNQMLTDTDVAFDV 709
Query: 552 LELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 611
L + S E N +L G+KP EP L ML RA++ LR K RIF+P+GR +MG
Sbjct: 710 L-IASCAEQGNTAAIMLSAGFKPQTEPHLQGMLTCIRAAQFWGLREKARIFVPSGRWLMG 768
Query: 612 CLDETRTLNYGQVFVQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
CLDE L GQ F+Q+S HG S FS+ ++ + +++G+V +AKNPCLHP
Sbjct: 769 CLDELGVLEQGQCFIQVSSPSLENCFLKHG--SRFSAQKNLK--VIKGIVAIAKNPCLHP 824
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GDVR+L+AV+ P L H+VDC+VFPQKG R
Sbjct: 825 GDVRILEAVDAPGLEHLVDCLVFPQKGDR 853
>gi|414877742|tpg|DAA54873.1| TPA: hypothetical protein ZEAMMB73_768916 [Zea mays]
Length = 937
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 246/689 (35%), Positives = 368/689 (53%), Gaps = 50/689 (7%)
Query: 34 EYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEV 93
+ +L+ ++ E+ + +++ LLI+L AP + + D+ P +
Sbjct: 203 DVKLQFPVRDVAEVRV----FRLDCSLLIRLSAAPLVCYR-TADDDIHVSVPFDLLDDDD 257
Query: 94 PDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSR 153
P W+RTTD TPS IG+ + R P + Y ++ + G +R
Sbjct: 258 P---WIRTTDITPSGAIGRCGAYRITFSPRF-WPKMERALTYMRDRRVAILDCVGGWGAR 313
Query: 154 S--------------LDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLV 199
DL V +G+ P +LF +N LV G ++ L F+ L+
Sbjct: 314 RGLTVRDEPEFGERMQDLFFCVQHAEGLKFP--VLFLVNALVHKGVISQHHLTPEFFGLL 371
Query: 200 DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTS-RSKPSSPAISLDDGLV 258
V+++ + + + + C L D+ +Y+ R+K + D
Sbjct: 372 QRKEDDVNVAALREFWGDKFPVFDACGRLKN-LQDRVARYLKHLRNK-------IGDVNS 423
Query: 259 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS- 317
V R+ +TP++ Y PE+ SNRV+RH+ D FLR++F+DE + ++S L+ +
Sbjct: 424 EVRRLVITPTKAYCMPPEVERSNRVIRHYSEVSDRFLRVTFMDERMQMLNSNVLNFSAAQ 483
Query: 318 ------SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLT 371
S + + +T +Y R+ + L G + RK+ FLAFSS+QLR+ SAW FA T
Sbjct: 484 IVKDLMSNSFLHKTTVYKRVKTFLTEGFHMCGRKYSFLAFSSNQLRDRSAWFFAEDRTTT 543
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 431
IR+WMG F +NVAK+AAR+GQ FSS+ T+ + E+ D E+ Y+FS
Sbjct: 544 VETIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVVLQPHEVNECLD---EVEHNGYIFS 599
Query: 432 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA--DPTSSKKLSLRDSMRKY 489
DGIGK++ + A +VA K L DNPPSA+QIRY G+KGV++ +LSLR SM K+
Sbjct: 600 DGIGKITCDLALEVAQKLQLTDNPPSAYQIRYAGFKGVISVWEGKNDGIRLSLRPSMHKF 659
Query: 490 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 549
ES T L+V++W+K+QP FLNRQ+I+LLS+L + D IF + Q + L+ IL+D A
Sbjct: 660 ESNHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDSDVAF 719
Query: 550 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
+ + S E +L G P EP L ML R+S+LL L KTRIF+P GR +
Sbjct: 720 DIVT-ASCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPKGRWL 778
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQ-LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
MGCLDE L GQ F++ S L S S++ + I+ G +V+AKNPCLHP
Sbjct: 779 MGCLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETIL-GTIVMAKNPCLHP 837
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GDVR+L+AV+VP LHH+VDC+VFP+KG R
Sbjct: 838 GDVRILEAVDVPELHHLVDCLVFPKKGER 866
>gi|75330108|sp|Q8LHH9.1|SHL2_ORYSJ RecName: Full=Probable RNA-dependent RNA polymerase SHL2; AltName:
Full=Protein SHOOTLESS 2
gi|21328146|dbj|BAC00725.1| putative RNA-dependent RNA polymerase [Oryza sativa Japonica Group]
gi|157279691|dbj|BAF80151.1| SHOOTLESS2 [Oryza sativa Japonica Group]
Length = 1218
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 245/649 (37%), Positives = 351/649 (54%), Gaps = 47/649 (7%)
Query: 76 RSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAY 135
R+ D + PV F DD W+RTTD TPS IG+ + R P Y
Sbjct: 249 RTADDDFHEPV-PFDLLDDDDPWIRTTDITPSGAIGRCGVYRISFSARF-WPKMDRALDY 306
Query: 136 YKESEDRFVLETGSAYS--RSL-------------DLVPIVGPPDGIALPYEILFKINLL 180
+E +++ G + R L D+ + +G+ P +LF +N L
Sbjct: 307 MRERR-VAIVDCGGGWGPRRGLTVRDELEFGEPMQDVFFCLQHAEGLKFP--LLFMVNAL 363
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
V G + L F+ L+ V+++ + + + + C + L R
Sbjct: 364 VHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARN-- 421
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
P + D V R+ +TP+R Y PE+ SNRVLRH+ D FLR++F+
Sbjct: 422 -----PKLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFM 476
Query: 301 DEDLDKIHSTDL-SPRGSSATDI------TRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
DE + +++ L S D+ +T +Y R+ L G + RK+ FLAFSS
Sbjct: 477 DEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSS 536
Query: 354 SQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI 413
+QLR+ SAW FA T IR+WMG F +NVAK+AAR+GQ FSS+ T+++ DE+
Sbjct: 537 NQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEV 595
Query: 414 EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA- 472
+ D ++ +Y+FSDGIGK++ + A +VA + L DNPPSA+QIR+ G+KGV+A
Sbjct: 596 DESFD---DVVHNEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVW 652
Query: 473 -DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 531
+L LR SMRK+ES L+V++W+K+QP FLNRQ+I LLS+L + D IF + Q
Sbjct: 653 QGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQ 712
Query: 532 REAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASK 591
+ L+ IL+D A E L S ++ N +L G++P EP L ML R+++
Sbjct: 713 ETMLSNLNNILSDRDVAFEVL-TTSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQ 771
Query: 592 LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI---SGAGYRQLHGESSLFSSSRS 648
L +L K RIF+P GR +MGCLDE L GQ F++ S Y HG S FSS+
Sbjct: 772 LQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKHG--SRFSSTDK 829
Query: 649 RQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
I+ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+VFPQKG R
Sbjct: 830 NTEVIL-GTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGER 877
>gi|449441914|ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase 6 [Cucumis sativus]
Length = 1197
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 263/746 (35%), Positives = 391/746 (52%), Gaps = 91/746 (12%)
Query: 4 FAVLWRG-----------VNVTVNFGFGMR-----KINFLLSHLGEEYRLELDYENIWEI 47
F+V WRG + T F F K N + L +Y++E +I +I
Sbjct: 147 FSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNNKHTFLKCDYKMEFIVRDINQI 206
Query: 48 ELHCPRWQMTK--YLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFT 105
R+ T +L+QL +P I+ + D+ P + P W+RTTDFT
Sbjct: 207 T----RYTDTSCYVILLQLTASPCIWYR-TADDDIAKLVPYDLLDDDDP---WIRTTDFT 258
Query: 106 PSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVP-IVGPP 164
S IG+ + +P R + Y KE + SL+ P I+ P
Sbjct: 259 ISGAIGRCNTFRVSVPPRYGI-KLNNAMNYLKEQR---------VHQVSLNRPPKILNEP 308
Query: 165 D-GIAL-------------PYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISC 210
D G+ + +EILF +N ++ G + + F+ L+ V+++
Sbjct: 309 DYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAA 368
Query: 211 IEH-------ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRV 263
+ H LD LK WL + RSK L D +V + R+
Sbjct: 369 LSHIHAFRRPVLDACKKLKLV----QEWLLKN--PTLLKRSK------ELVD-IVEIRRL 415
Query: 264 QVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS-------TDLSPRG 316
+TPS+ Y PE+ +SNRVLR ++ D FLR++F+DE + KI+S +
Sbjct: 416 VITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEI 475
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
+S++ +T+I+ R+ L++G + RK+ FLA+SS+QLR+ SAW FA ++ I
Sbjct: 476 TSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAIL 535
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
WMG F +NVAK AAR+GQ FSS+ T+ V + + D+ ++ + YVFSDGIG
Sbjct: 536 GWMGKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVN--HDLS-DVERNGYVFSDGIGT 591
Query: 437 VSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELT 494
++ + A++VA K + +PP A+QIRY GYKGVVA P+ +L+LR SM K+ES
Sbjct: 592 ITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHR 651
Query: 495 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL 554
L++ +W+++QP FLNRQ+I+LLSTL + DEIF Q + +LD ++TD A E L
Sbjct: 652 ILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVL-T 710
Query: 555 MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 614
S E N +L G++P EP L ML RA++L LR K RIF+ GR MGC D
Sbjct: 711 ASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFD 770
Query: 615 ETRTLNYGQVFVQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 671
E+ L GQ F+Q+S + HG SLF+ +++ +V+G VV+AKNPCLHPGDV
Sbjct: 771 ESGVLQEGQCFIQVSTPLLEKCFSKHG--SLFAETKNNLT-VVRGTVVIAKNPCLHPGDV 827
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGMR 697
R+L+AV+ P LHH+ DC+VFP+ G R
Sbjct: 828 RILEAVDAPELHHLYDCLVFPRNGER 853
>gi|449499234|ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 263/746 (35%), Positives = 391/746 (52%), Gaps = 91/746 (12%)
Query: 4 FAVLWRG-----------VNVTVNFGFGMR-----KINFLLSHLGEEYRLELDYENIWEI 47
F+V WRG + T F F K N + L +Y++E +I +I
Sbjct: 147 FSVAWRGPSSGMDFLVDPFDGTCKFCFTKDTAFSFKDNNKHTFLKCDYKMEFIVRDINQI 206
Query: 48 ELHCPRWQMTK--YLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFT 105
R+ T +L+QL +P I+ + D+ P + P W+RTTDFT
Sbjct: 207 T----RYTDTSCYVILLQLTSSPCIWYR-TADDDIAKLVPYDLLDDDDP---WIRTTDFT 258
Query: 106 PSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVP-IVGPP 164
S IG+ + +P R + Y KE + SL+ P I+ P
Sbjct: 259 ISGAIGRCNTFRVSVPPRYGI-KLNNAMNYLKEQR---------VHQVSLNRPPKILNEP 308
Query: 165 D-GIAL-------------PYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISC 210
D G+ + +EILF +N ++ G + + F+ L+ V+++
Sbjct: 309 DYGVQMTDHFFCILYKKDISFEILFLVNAVMHKGIINQHQMSDRFFDLLRNQPNEVNLAA 368
Query: 211 IEH-------ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRV 263
+ H LD LK WL + RSK L D +V + R+
Sbjct: 369 LSHIHAFRRPVLDACKKLKLV----QEWLLKN--PTLLKRSK------ELVD-IVEIRRL 415
Query: 264 QVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS-------TDLSPRG 316
+TPS+ Y PE+ +SNRVLR ++ D FLR++F+DE + KI+S +
Sbjct: 416 VITPSKAYCFPPEVELSNRVLRRYKDVADRFLRVTFMDEGMKKINSHVYTYYVAPIVKEI 475
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
+S++ +T+I+ R+ L++G + RK+ FLA+SS+QLR+ SAW FA ++ I
Sbjct: 476 TSSSFPQKTKIFARMKHILKHGFHLCGRKYSFLAYSSNQLRDQSAWFFAECKSISVDAIL 535
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
WMG F +NVAK AAR+GQ FSS+ T+ V + + D+ ++ + YVFSDGIG
Sbjct: 536 GWMGKFTN-KNVAKCAARIGQCFSSTYATIEVPRNMVN--HDLS-DVERNGYVFSDGIGT 591
Query: 437 VSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELT 494
++ + A++VA K + +PP A+QIRY GYKGVVA P+ +L+LR SM K+ES
Sbjct: 592 ITPDLAQEVADKLKMDGSPPCAYQIRYAGYKGVVATWPSKKDGIRLALRPSMNKFESNHR 651
Query: 495 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL 554
L++ +W+++QP FLNRQ+I+LLSTL + DEIF Q + +LD ++TD A E L
Sbjct: 652 ILEICSWTRFQPGFLNRQIITLLSTLSVPDEIFWSMQETMISKLDRMITDTDVAFEVL-T 710
Query: 555 MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 614
S E N +L G++P EP L ML RA++L LR K RIF+ GR MGC D
Sbjct: 711 ASCAEQGNAAAIMLSAGFEPRTEPHLRGMLMCIRAAQLWGLREKARIFVTEGRWCMGCFD 770
Query: 615 ETRTLNYGQVFVQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 671
E+ L GQ F+Q+S + HG SLF+ +++ +V+G VV+AKNPCLHPGDV
Sbjct: 771 ESGVLQEGQCFIQVSTPLLEKCFSKHG--SLFAETKNNLT-VVRGTVVIAKNPCLHPGDV 827
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGMR 697
R+L+AV+ P LHH+ DC+VFP+ G R
Sbjct: 828 RILEAVDAPELHHLYDCLVFPRNGER 853
>gi|15229153|ref|NP_190519.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
gi|75337188|sp|Q9SG02.1|RDR6_ARATH RecName: Full=RNA-dependent RNA polymerase 6; Short=AtRDRP6;
AltName: Full=Protein SILENCING DEFECTIVE 1; AltName:
Full=Protein SUPPRESSOR OF GENE SILENCING 2; AltName:
Full=RNA-directed RNA polymerase 6
gi|12324444|gb|AAG52184.1|AC012329_11 putative RNA-directed RNA polymerase; 73997-69985 [Arabidopsis
thaliana]
gi|6899955|emb|CAB71285.1| RNA-directed RNA polymerase-like protein [Arabidopsis thaliana]
gi|8164028|gb|AAF73959.1| SGS2 [Arabidopsis thaliana]
gi|332645029|gb|AEE78550.1| RNA-dependent RNA polymerase 6 [Arabidopsis thaliana]
Length = 1196
Score = 377 bits (967), Expect = e-101, Method: Compositional matrix adjust.
Identities = 243/669 (36%), Positives = 375/669 (56%), Gaps = 62/669 (9%)
Query: 60 LLIQLLGAPRIFQKGIRSPDLLYES-PVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCM 118
L++QL +PR++ + + D +Y++ P + P W+RTTDFT IG+ +
Sbjct: 216 LILQLASSPRVWYRT--ADDDIYDTVPGDLLDDDDP---WIRTTDFTQVGAIGRCHSYRV 270
Query: 119 ELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPP-----------DGI 167
+ R E + Y++ R V E + + P G P +GI
Sbjct: 271 LISPRYE-NKLRTALDYFRM---RRVQEERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGI 326
Query: 168 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 227
+ +EI+F +N ++ G L F+ L+ V+I+ ++H C Y+
Sbjct: 327 S--FEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNIASLKHL---------CTYK 375
Query: 228 PSRWLTDQYRKY-MTSRSKPSSPAI----SLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 282
R + D Y++ + +P + + + + R+ +TP+R Y PE+ +SNR
Sbjct: 376 --RPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRAYCLPPEVELSNR 433
Query: 283 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTRILSTL 335
VLR ++ + FLR++F+DE + I+S LS +S++ +T ++ R+ S L
Sbjct: 434 VLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSIL 493
Query: 336 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARL 395
+G + RK+ FLAFS++QLR+ SAW FA ++I+ WMG F++ +NVAK AAR+
Sbjct: 494 TDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD-KNVAKCAARM 552
Query: 396 GQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 454
G FSS+ T+ V E++ +PD++ + YVFSDGIG ++ + A +V K L +
Sbjct: 553 GLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGTITPDLADEVMEKLKLDVH 608
Query: 455 -PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 511
P A+QIRY G+KGVVA P+ S +L+LRDSM+K+ S+ T L++ +W+++QP FLNR
Sbjct: 609 YSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKFFSKHTILEICSWTRFQPGFLNR 668
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 571
Q+I+LLS LG+ DEIF Q + +L+ IL D A E L S E N +L G
Sbjct: 669 QIITLLSVLGVPDEIFWDMQESMLYKLNRILDDTDVAFEVL-TASCAEQGNTAAIMLSAG 727
Query: 572 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 631
+KP EP L ML + R ++L LR K+RIF+ +GR +MGCLDE L +GQ F+Q+S
Sbjct: 728 FKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVSKP 787
Query: 632 GYRQL---HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 688
HG S F +++ +V+G V +AKNPCLHPGDVR+L+AV+VP LHHM DC
Sbjct: 788 SIENCFSKHG--SRFKETKTDLE-VVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDC 844
Query: 689 VVFPQKGMR 697
++FPQKG R
Sbjct: 845 LIFPQKGDR 853
>gi|297819596|ref|XP_002877681.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
gi|297323519|gb|EFH53940.1| RNA-dependent RNA polymerase 6 [Arabidopsis lyrata subsp. lyrata]
Length = 1197
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 249/696 (35%), Positives = 384/696 (55%), Gaps = 66/696 (9%)
Query: 34 EYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEV 93
+Y+LEL +I + + + L++QL +PR++ + D+ PV +
Sbjct: 192 DYKLELLVRDIQTVRQY--KNSHGYVLILQLASSPRVWYR-TADDDIHDTIPVDLLDDDD 248
Query: 94 PDDQWVRTTDFTPSNFIGQSTGLCMELPYRLEL-PDFKENFAYYKES-EDRFVLETGSAY 151
P W+RTTDFT IG+ YR+ + P +++ E R V E +
Sbjct: 249 P---WIRTTDFTQVGAIGRCHS------YRVLISPRYEKKLTTALEYLRMRRVQEERVRW 299
Query: 152 SRSLDLVPIVGPP-----------DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVD 200
+ P G P +GI+ +EI+F +N ++ G L F+ L+
Sbjct: 300 PPRIRNEPCFGEPVSDHFFCIHHKEGIS--FEIMFLVNSVLHRGVFNQFQLTERFFDLLR 357
Query: 201 PYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKY-MTSRSKPSSPAI----SLDD 255
V+I+ ++H C Y+ R + D Y++ + +P + +
Sbjct: 358 NQPKDVNIASLKHL---------CTYK--RPVFDAYKRLKLVQEWILKNPKLLGGHEQSE 406
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-- 313
+ + R+ +TP+R Y PE+ +SNRVLR +R + FLR++F+DE + I+S LS
Sbjct: 407 DISEIRRLVITPTRAYCLPPEVELSNRVLRKYRAVAERFLRVTFMDESMQTINSNVLSYF 466
Query: 314 -----PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 368
+S++ +T ++ R+ S L +G + RK+ FLAFS++QLR+SSAW FA
Sbjct: 467 VAPIVKDLTSSSFSQKTYVFKRVKSILTDGFKLCGRKYSFLAFSANQLRDSSAWFFAEDG 526
Query: 369 GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTK 427
++I+ WMG F++ +NVAK AAR+G FSS+ T+ V +E+ +PD++ +
Sbjct: 527 KTRVSDIKAWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPNEVNTELPDIE----RNG 581
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSK--KLSLRD 484
YVFSDGIG ++ + A +V K L + P A+QIRY G+KGVVA P+ +L+LRD
Sbjct: 582 YVFSDGIGTITPDLADEVMEKLKLDLHCTPCAYQIRYAGFKGVVARWPSKGDGIRLALRD 641
Query: 485 SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
SM+K+ S+ T L++ +W+++QP FLNRQ+I+LLS LG+ DEIF Q + +L+ IL D
Sbjct: 642 SMKKFNSKHTILEICSWTRFQPGFLNRQIITLLSVLGVPDEIFWDMQESMLYKLNRILDD 701
Query: 545 PLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
A E L S E N +L G+KP EP L ML + R ++L LR K+RIF+
Sbjct: 702 TDVAFEVL-TASCAEQGNTAAIMLSAGFKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVT 760
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVVVA 661
+GR +MGCLDE L +GQ F+Q+S HG S F +++ +V+G V +A
Sbjct: 761 SGRWLMGCLDEAGKLEHGQCFIQVSKPSIENCFSKHG--SRFKETKTDLE-VVKGYVAIA 817
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
KNPCLHPGDVR+L+AV+VP LHHM DC++FP+KG R
Sbjct: 818 KNPCLHPGDVRILEAVDVPQLHHMYDCLIFPKKGDR 853
>gi|242093792|ref|XP_002437386.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
gi|241915609|gb|EER88753.1| hypothetical protein SORBIDRAFT_10g025950 [Sorghum bicolor]
Length = 1239
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 254/697 (36%), Positives = 373/697 (53%), Gaps = 61/697 (8%)
Query: 34 EYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEV 93
+ +LE N+ E+ + ++ L+++L AP ++ + + D + + F+ +
Sbjct: 247 DIKLEFSVSNVAEVLV----FEADDSLILRLSAAPLVYYR--TAGDDVQDRVPFHLI-DT 299
Query: 94 PDDQWVRTTDFTPSNFIGQSTGLCMELPYRLEL-----PDFKENFAYYKESEDRFVLETG 148
DD W+RTTD TPS IG+ + YR+ P + Y +R +
Sbjct: 300 DDDPWIRTTDVTPSGAIGRCSA------YRVSFGAMFWPTMRTALKYM----ERQGVPVD 349
Query: 149 SAYSRSLDLVPIVGPPDGIALPYEI-------------LFKINLLVQNGCVAGPLLDSNF 195
SR L + P G + + L+ +N+L+ N V L S F
Sbjct: 350 VRDSRWLGFTVLEEPDFGRPMQHVFFSLRQDEDLWFPELYLVNVLIHNRIVNLHQLTSEF 409
Query: 196 YRLVDPYRAPVSISCIEHALDKLYHLK-ECCYEP-SRWLTDQYRKYMTSRSKPSSPAISL 253
+ L+ V+++ AL +L+ K + C P SR Q R + L
Sbjct: 410 FSLLRRAHEDVNVA----ALTELFGAKLQVCSNPCSRLKNAQDRATKNLNLLFHGSSRKL 465
Query: 254 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 313
D V R+ +TP+R Y P++ SNRV RH+ + D FLR++F+DE + +++ LS
Sbjct: 466 GDFNAEVRRLIITPTRTYCMPPQLERSNRVTRHYHQLSDRFLRVAFVDEGMLPLNANALS 525
Query: 314 PR--------GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 365
+ SS T T +Y R+ + L G + RK+ FLAFS+SQL++ SAW FA
Sbjct: 526 LQVVPLVKDLMSSPTQ-QMTTVYRRVQTILTEGFTMCGRKYSFLAFSTSQLKQKSAWFFA 584
Query: 366 SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKIEIG 424
T A ++EWMG F IRN AK+AAR+G F+SS T+++ E+ E + DV I G
Sbjct: 585 EDGTTTVASMKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPCEVDEYLEDV-IHNG 642
Query: 425 KTKYVFSDGIGKVSAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK--KLS 481
Y FSDGIG ++ + A +VA + L D PS +QIRY G+KGVVA + ++S
Sbjct: 643 ---YNFSDGIGMITQDLALEVAKRLQLTDIYAPSTYQIRYAGFKGVVAVSTGQNDGMRMS 699
Query: 482 LRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 541
LR SMRK+ES + L+VL+W+K+QP FLNRQ+I+LL++LG+ D +F + Q + L I
Sbjct: 700 LRPSMRKFESAHSVLEVLSWTKFQPSFLNRQIITLLTSLGVPDAVFWQMQEAMLGNLKRI 759
Query: 542 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
L+D A E + P E+ + +L G+ P EP L ML AS++ L KTRI
Sbjct: 760 LSDNNVAYEVVTNSCP-EHGSTAGLMLSAGFAPATEPHLRAMLLAICASQMQGLLDKTRI 818
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH-GESSLFSSSRSRQRFIVQGLVVV 660
F+P GR +MGCLDE L GQ F+Q+S + S+F S I+ G VV+
Sbjct: 819 FVPKGRWLMGCLDELGILEQGQCFIQVSTPSLNNCYVNRGSIFPSEYKNNAEIIVGTVVM 878
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
AKNPCLHPGDVR+L+AV+VP LHH+VDC+VFPQKG R
Sbjct: 879 AKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGER 915
>gi|8248473|gb|AAF74208.1|AF268093_1 RNA-dependent RNA polymerase [Arabidopsis thaliana]
Length = 1196
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 239/666 (35%), Positives = 368/666 (55%), Gaps = 56/666 (8%)
Query: 60 LLIQLLGAPRIFQKGIRSPDLLYES-PVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCM 118
L++QL +PR++ + + D +Y++ P + P W+RTTDFT IG+ +
Sbjct: 216 LILQLASSPRVWYR--TADDDIYDTVPGDLLDDDDP---WIRTTDFTQVGAIGRCHSYRV 270
Query: 119 ELPYRLELPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPP-----------DGI 167
+ R E + Y++ R V E + + P G P +GI
Sbjct: 271 LISPRYE-NKLRTALDYFRM---RRVQEERVRWPPRIRNEPCFGEPVSDHFFCIHHKEGI 326
Query: 168 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 227
+ +EI+F +N ++ G L F+ L+ V+I+ ++H C Y+
Sbjct: 327 S--FEIMFLVNSVLHRGVFNQFQLTERFFDLLRNQPKDVNIASLKHL---------CTYK 375
Query: 228 PSRWLTDQYRKY-MTSRSKPSSPAI----SLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 282
R + D Y++ + +P + + + + R+ +TP+R Y PE+ +SNR
Sbjct: 376 --RPVFDAYKRLKLVQEWIQKNPKLLGSHEQSEDISEIRRLVITPTRAYCLPPEVELSNR 433
Query: 283 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTRILSTL 335
VLR ++ + FLR++F+DE + I+S LS +S++ +T ++ R+ S L
Sbjct: 434 VLRRYKAVAERFLRVTFMDESMQTINSNVLSYFVAPIVKDLTSSSFSQKTYVFKRVKSIL 493
Query: 336 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARL 395
+G + RK+ FLAFS++QLR+ SAW FA ++I+ WMG F++ +NVAK AAR+
Sbjct: 494 TDGFKLCGRKYSFLAFSANQLRDRSAWFFAEDGKTRVSDIKTWMGKFKD-KNVAKCAARM 552
Query: 396 GQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 454
G FSS+ T+ V E++ +PD++ + YVFSDGIG ++ + A +V K L +
Sbjct: 553 GLCFSSTYATVDVMPHEVDTEVPDIE----RNGYVFSDGIGTITPDLAGEVMEKLKLDVH 608
Query: 455 -PPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 511
P A+QIRY G+KGVVA P+ S +L+LRDSM+K S+ T L++ +W+++QP FLNR
Sbjct: 609 YSPCAYQIRYAGFKGVVARWPSKSDGIRLALRDSMKKIFSKHTILEICSWTRFQPGFLNR 668
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 571
Q+I+LLS LG+ EIF Q + +LD IL D A E L S E N +L G
Sbjct: 669 QIITLLSVLGVPVEIFWDMQESMLYKLDRILVDTDVAFEVL-TASCAEQGNTAAIMLSAG 727
Query: 572 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 631
+KP EP L ML + R ++L LR K+RIF+ +GR +MGCLDE L +GQ F+Q+S
Sbjct: 728 FKPKTEPHLRGMLSSVRIAQLWGLREKSRIFVTSGRWLMGCLDEAGILEHGQCFIQVSKP 787
Query: 632 GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 691
+ + +V+G V +AKNPCLHPGDVR+L+AV+VP LHHM DC++F
Sbjct: 788 SIENCFSKHGSRFKETKKDLEVVKGYVAIAKNPCLHPGDVRILEAVDVPQLHHMYDCLIF 847
Query: 692 PQKGMR 697
PQKG R
Sbjct: 848 PQKGDR 853
>gi|242093794|ref|XP_002437387.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
gi|241915610|gb|EER88754.1| hypothetical protein SORBIDRAFT_10g025970 [Sorghum bicolor]
Length = 1251
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 250/666 (37%), Positives = 373/666 (56%), Gaps = 44/666 (6%)
Query: 60 LLIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCME 119
LL++L AP ++ + + D +++ F+ +V DD W+RTTD TPS IG+ + +
Sbjct: 286 LLLRLSAAPLVYYR--TAGDDVHDRVPFHQI-DVDDDPWIRTTDVTPSGAIGRCSAYRVS 342
Query: 120 LPYRLELPDFKENFAYYKES-------EDRF----VLETGSAYSRSLDLVPIVGPPDGIA 168
R P + Y K+ + R VLE LD+ + +G+
Sbjct: 343 FAARF-WPTMRAALEYMKKQGVPVDVCDSRCRGVTVLEEPDFGRPMLDVFFSLRHDEGLR 401
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY--HLKECCY 226
P L+ +N+L+ NG V L S F+ L+ + V+++ AL +L+ L + C
Sbjct: 402 FPE--LYLVNVLIHNGIVNPHQLTSEFFSLLRRAQEDVNVA----ALTELFGTKLHQVCN 455
Query: 227 EP-SRWLTDQYRKYMTSRSKPSSPAISLDDGLVY-VHRVQVTPSRVYFCGPEINVSNRVL 284
+P SR Q R +S + D V+ V R+ +TP+R Y P++ SNRV
Sbjct: 456 DPCSRLKNAQVRAAKNLNLLSNSSSRKFGDYNVFEVRRLIITPTRAYCMPPQVERSNRVT 515
Query: 285 RHFRRDIDNFLRISFIDEDLDKIHSTDLS-------PRGSSATDITRTRIYTRILSTLRN 337
RH+R+ D FLR++F+DE + ++S LS S++ T +Y R+ + L
Sbjct: 516 RHYRQVSDRFLRVTFVDEGMLPLNSHALSLHVVPFVKDSMSSSSQQMTTVYRRVQTILTE 575
Query: 338 GILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQ 397
G + RK+ FLAFS+SQL++ SAW FA T A ++EWMG F IRN AK+AAR+G
Sbjct: 576 GFTMCGRKYSFLAFSTSQLKQKSAWFFAEDGTTTVASMKEWMGQF-PIRNPAKHAARMGL 634
Query: 398 SFSSSKETLSVHMDEI-EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD-NP 455
F+SS T+++ E+ E + DV I G Y FSDGIG ++ + A +VA + L D
Sbjct: 635 CFTSSYATVTMQPCEVNEYLEDV-IHNG---YNFSDGIGIITQDLALEVAKRLPLTDIYA 690
Query: 456 PSAFQIRYGGYKGVVAADPTSS---KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 512
PSA+QIRY G+KGVVA P + + +SLR SMRK+ES ++V++W+K+QP FLNRQ
Sbjct: 691 PSAYQIRYAGFKGVVAVSPRHNDGMRMMSLRPSMRKFESVHPVIEVVSWTKFQPAFLNRQ 750
Query: 513 LISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGY 572
+I+LL++LG+ D++F + Q + L IL++ A + + P E+ + +L G+
Sbjct: 751 IITLLTSLGVPDDVFWQMQEAMLGNLKRILSNTDVAYKIVTSSCP-EHGSTAGLMLTAGF 809
Query: 573 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 632
P EP L ML AS++ L KT IF+P GR +MGCLDE L GQ F+++S
Sbjct: 810 APATEPHLRAMLLAICASQMKGLLDKTWIFVPKGRWLMGCLDELGILEQGQCFIRVSTPS 869
Query: 633 YRQLH-GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 691
+ S+ S I+ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+VF
Sbjct: 870 LNNHYMNRGSISPSEYKNNAEIIVGTVVMAKNPCLHPGDVRILEAVDVPELHHLVDCLVF 929
Query: 692 PQKGMR 697
P+KG R
Sbjct: 930 PKKGER 935
>gi|326522592|dbj|BAK07758.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 597
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 184/290 (63%), Positives = 222/290 (76%), Gaps = 17/290 (5%)
Query: 408 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 467
VH E++ +P+V TKYVFSDGIG +SA+FA +V+ KC L PSAFQIRYGGYK
Sbjct: 2 VHKYEVQALPEV---TNGTKYVFSDGIGTISADFADEVSRKCKLARFTPSAFQIRYGGYK 58
Query: 468 GVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIF 527
GVVA DP S KLSLR SM K+ SE LDVLA+SKYQPCFLNRQLI+LLSTLG+ D IF
Sbjct: 59 GVVAIDPRSHWKLSLRSSMSKFPSENITLDVLAYSKYQPCFLNRQLITLLSTLGVRDNIF 118
Query: 528 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTF 587
E KQ+ AV QL+ ++T+P A +A+ELM GE TN++KELL+CGY+PD EP+LSM+LQTF
Sbjct: 119 ELKQQAAVMQLNRLVTEPQAAIDAIELMPMGEITNVVKELLLCGYQPDVEPYLSMILQTF 178
Query: 588 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR 647
RASKLLEL+TK+RIFIP GR+MMGCLDETRTL YG+VF+Q S +S+
Sbjct: 179 RASKLLELKTKSRIFIPEGRAMMGCLDETRTLKYGEVFIQAS--------------NSAN 224
Query: 648 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+F+V G VVVAKNPCLHPGD+R+LKAV P L HMV+CVVFPQ+G R
Sbjct: 225 ESDKFVVTGKVVVAKNPCLHPGDIRILKAVYTPVLDHMVNCVVFPQQGPR 274
>gi|312283345|dbj|BAJ34538.1| unnamed protein product [Thellungiella halophila]
Length = 998
Score = 369 bits (948), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 253/698 (36%), Positives = 383/698 (54%), Gaps = 70/698 (10%)
Query: 34 EYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLYES-PVFNFFKE 92
+Y+LEL +I + + R LL+QL +PR++ + + D +YE+ PV +
Sbjct: 192 DYKLELLVRDIRTVRQY--RASDGFVLLLQLASSPRVWYR--TADDDIYETCPVDLLDDD 247
Query: 93 VPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKEN-----FAYYKESE------- 140
P W+RTTDFT + IG+ L YR+ L EN Y +
Sbjct: 248 DP---WIRTTDFTQAGAIGRC------LSYRVLLSPRYENKLISALDYLRRQRVKEERVR 298
Query: 141 --DRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRL 198
R E G + S D + +GI+ +EI+F +N ++ G + L F+ L
Sbjct: 299 WPPRIRDEPGFGEAVS-DHFFCIHHKEGIS--FEIMFLVNSVLHRGVLNQFQLTERFFDL 355
Query: 199 VDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKY-MTSRSKPSSPAISLD--- 254
+ V+I+ ++H C Y +R + D Y++ + +P + +
Sbjct: 356 LRNQPKDVNIASLKHL---------CTY--NRPVFDAYKRLKLVQEWVLKNPKLLVSHER 404
Query: 255 -DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 313
D + + R+ +TP+R Y PE+ +SNRVLR ++ + FLR++F+DE + ++S LS
Sbjct: 405 SDDISEIRRLVITPTRAYCLPPEVELSNRVLRKYKAVSERFLRVTFMDESMQTMNSNVLS 464
Query: 314 -------PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS 366
+S++ +T ++ R+ + L +G + RK+ FLAFSS+QLR+ SAW F+
Sbjct: 465 YFVAPIVKDLTSSSFSQKTHVFKRVKTLLTDGFKLCGRKYSFLAFSSNQLRDRSAWFFSE 524
Query: 367 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGK 425
++I+ WMG F++ +NVAK AAR+G FSS+ T+ V E++ +P EI +
Sbjct: 525 DGNTRVSDIKIWMGKFKD-KNVAKCAARMGLCFSSTYATVDVMPHEVDTELP----EIER 579
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSK--KLSL 482
Y FSDGIG +S + A +V K L + P A+QIRY G+KGVVA P+ +L+L
Sbjct: 580 NGYTFSDGIGTISPDLADEVMEKLKLDVHYTPCAYQIRYAGFKGVVARWPSKGDGIRLAL 639
Query: 483 RDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 542
R SM K+ S+ T L++ +W+++QP FLNRQ+ISLLS LG+ DEIF Q + +L+ IL
Sbjct: 640 RHSMNKFHSKHTILEICSWTRFQPGFLNRQIISLLSVLGVPDEIFWDMQESMLCKLNRIL 699
Query: 543 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
D A E L S E N +L G+KP EP L ML + R ++L LR K+RIF
Sbjct: 700 DDIDVAFEVLT-TSCAEQGNTAAIMLSAGFKPKIEPHLRGMLSSVRTAQLWGLREKSRIF 758
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL---HGESSLFSSSRSRQRFIVQGLVV 659
+ +GR +MGCLDE L GQ F+Q+S HG S F S++ + +V+G V
Sbjct: 759 VSSGRWLMGCLDEAGILEQGQCFIQVSKPSIENCFSRHG--SRFKESKADMQ-VVKGYVA 815
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+AKNPCLHPGDVR+L+AV+VP LH M DC++FPQ G R
Sbjct: 816 IAKNPCLHPGDVRILEAVDVPQLHDMYDCLIFPQNGDR 853
>gi|105990552|gb|ABF81698.1| RNA-dependent RNA polymerase [Zea mays]
Length = 459
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 194/461 (42%), Positives = 290/461 (62%), Gaps = 10/461 (2%)
Query: 87 FNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLE 146
F+ KE WVR DFTP++ G+ + L ++L + E+ + E + +
Sbjct: 2 FHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGELGE-LAIA 60
Query: 147 TGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPV 206
+ + S ++VP+V P+G ++PYE+LF++N LV G + ++++ +++++ +
Sbjct: 61 SMDVFGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLED----L 116
Query: 207 SISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVT 266
SI + +K+ LK CYEP +++ + M R K S L+ +R+ +T
Sbjct: 117 SIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHS-MNMRKKALSNKRE-SGKLMRCYRIHIT 174
Query: 267 PSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA--TDITR 324
PS++Y GPE VSN V+++ +F R++F+DED K+ LS R + +
Sbjct: 175 PSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPLK 234
Query: 325 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 384
T +Y RILS L+ G IG +K+EFLAFS+SQLR +S WMFAS LTA IR WMG+F +
Sbjct: 235 TGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIRRWMGHFED 294
Query: 385 IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 444
IR+V+K AAR+GQ FSSS++T V ++E+IPD+++ TKY+FSDGIGK+S FAR+
Sbjct: 295 IRSVSKCAARMGQLFSSSRQTFEVSSYDVEVIPDIEVTTDGTKYIFSDGIGKISTRFARQ 354
Query: 445 VASKCGLK-DNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSK 503
VA GL +PPSAFQIRYGGYKGV+ DPTS LSLR SM+K+ES+ T L++ WSK
Sbjct: 355 VAKLIGLDPAHPPSAFQIRYGGYKGVITIDPTSFFNLSLRPSMKKFESKSTMLNITNWSK 414
Query: 504 YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
QPC++NR++ISLLSTLGI DE FE Q++ + + D +LT+
Sbjct: 415 SQPCYVNREIISLLSTLGIKDEAFESMQQDDMHESDGMLTN 455
>gi|413955011|gb|AFW87660.1| hypothetical protein ZEAMMB73_096378 [Zea mays]
Length = 1901
Score = 357 bits (915), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 248/712 (34%), Positives = 373/712 (52%), Gaps = 71/712 (9%)
Query: 23 KINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLY 82
K+ F L+H+ E + D L+++L AP ++ + S D ++
Sbjct: 912 KLEFALAHVAEALAFQAD-----------------DSLVLRLSAAPLVYYR--TSGDDVH 952
Query: 83 ESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTG--------------LCMELPYRLELPD 128
F + DD W+RTTD T S IG+ + +E R +P
Sbjct: 953 GRVPFQLV-DADDDPWIRTTDVTRSGAIGRCLAYRVSFAVQFWPTMRVALECMQRQGVPV 1011
Query: 129 FKENFAYYKESEDRFVLETGSAYS--RSLDLVPIVGPPDGIALPYEILFKINLLVQNGCV 186
+ + + VLE R P G L + L+ +N+L+ NG V
Sbjct: 1012 HVRD----RRCQGFTVLEEAGLVQPMRDAFFSPRHDDDAGAGLRFPELYLVNVLMHNGVV 1067
Query: 187 AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK-ECCYEPSRWL---TDQYRKYMTS 242
+ F+ L+ R V+++ AL +L+ K C P L D+ K +
Sbjct: 1068 NPHQMTPEFFGLLMRTREDVNVA----ALTELFGAKLGVCDNPCWRLKNAQDKAAKNLDL 1123
Query: 243 RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 302
+ SS D V R+ VTP+R Y P++ SNRV+RH+ D FLR++F DE
Sbjct: 1124 VCRSSSSRRKASDCDAEVRRLIVTPTREYCMPPQVERSNRVIRHYHELSDRFLRVTFTDE 1183
Query: 303 DLDKIHSTDLSPRG-----SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLR 357
+ ++ L+ R + +T T +Y R+ + L G+++ R++ FLAFS+SQL+
Sbjct: 1184 GMLPLNPNALTLRAVPSTSTPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLK 1243
Query: 358 ESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP 417
+ SAW FA T A I+EWMG F IRN AK+AAR+G F+SS T+++ E++
Sbjct: 1244 QKSAWFFAEDGATTVAGIKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPGEVD--E 1300
Query: 418 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTS 476
D++ ++ + Y FSDGIG ++ + A +VA L D PSA+QIRY G+KGVVA P
Sbjct: 1301 DLE-DVTRNGYNFSDGIGVITEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAVSPPG 1359
Query: 477 -------SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEK 529
++++SLR SMRK+ES L+V++W+K+QP FLNRQ+I+LL+TLG+ D+ F +
Sbjct: 1360 PGQEDRGTRRMSLRPSMRKFESTHNVLEVVSWTKFQPAFLNRQIITLLTTLGVPDDSFWQ 1419
Query: 530 KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRA 589
Q + +L +L+D A E + P E + +L G+ P EP L ML
Sbjct: 1420 LQEAMLGKLRRVLSDSDVAYEVVTNSCP-EQGSTAGLMLGAGFAPATEPHLRAMLLAICT 1478
Query: 590 SKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS--GAGYRQLHGESSLFSSS- 646
S++ L KT IF+P GR +MGCLDE L GQ F+++S G R ++ S +F S
Sbjct: 1479 SQMQGLLNKTWIFVPKGRWLMGCLDEFGILEQGQCFLRVSTPSLGSRCVN-RSPIFPSEY 1537
Query: 647 -RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
++ G VV+AKNPCLHPGDVR+L+AV+VP L+H+VDC VFP+KG R
Sbjct: 1538 KGDANAQVITGTVVMAKNPCLHPGDVRILEAVDVPDLYHLVDCFVFPKKGER 1589
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 138/493 (27%), Positives = 219/493 (44%), Gaps = 106/493 (21%)
Query: 23 KINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLY 82
K+ F L+H+ E + D L+++L AP ++ + S D ++
Sbjct: 263 KLEFALAHVAEALAFQAD-----------------DSLVLRLSAAPLVYYR--TSGDDVH 303
Query: 83 ESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLEL-----PDFKENFAYYK 137
F + DD W+RTTD T S IG+ L YR+ P + +
Sbjct: 304 GRVPFQLV-DADDDPWIRTTDVTRSGAIGRC------LAYRVSFAVQFWPTMRVALECMQ 356
Query: 138 ES------EDR-----FVLETGSAYS--RSLDLVPIVGPPDGIALPYEILFKINLLVQNG 184
DR VLE R P G L + +L+ +N+L+ NG
Sbjct: 357 RQGVPVHVRDRRCRGFTVLEEAGLVQPMRDAFFSPRHDDDAGAGLRFPVLYLVNVLMHNG 416
Query: 185 CVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK-ECCYEPSRWLTDQYRKYMTSR 243
V + F+ L+ R V+++ AL +L+ K C P +R+Y
Sbjct: 417 VVNPHQMTPEFFGLLMRTREDVNVA----ALTELFGAKLGVCDNPC------WREY---- 462
Query: 244 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 303
C P + SNRV+RH+ D FLR++F DE
Sbjct: 463 -----------------------------CMP-VERSNRVIRHYHELSDRFLRVTFTDEG 492
Query: 304 LDKIHSTDLSPRG-----SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRE 358
+ ++ L+ R + +T T +Y R+ + L G+++ R++ FLAFS+SQL++
Sbjct: 493 MLPLNPNALTLRAVPSTSTPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSASQLKQ 552
Query: 359 SSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPD 418
SAW FA T A I+EWMG F IRN AK+AAR+G F+SS T+++ E++ D
Sbjct: 553 KSAWFFAEDGATTVAGIKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPGEVD--ED 609
Query: 419 VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAA----- 472
++ ++ + Y FSDGIG ++ + A +VA L D PSA+QIR ++ A
Sbjct: 610 LE-DVTRNGYNFSDGIGVITEDLALEVAEMLPLADRFAPSAYQIRREVFEETRVAMARSR 668
Query: 473 --DPTSSKKLSLR 483
P S+++L+ R
Sbjct: 669 TRSPESTRRLAHR 681
>gi|151370755|gb|ABS11001.1| RNA-dependent RNA polymerase 1 [Nicotiana clevelandii]
Length = 243
Score = 354 bits (908), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 177/245 (72%), Positives = 204/245 (83%), Gaps = 2/245 (0%)
Query: 308 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR 367
HSTDL PR S+ I RT IY RILSTLRNG +IGD++FEFLAFSSSQLR++S WMFASR
Sbjct: 1 HSTDLLPRASTGNGI-RTDIYLRILSTLRNGFVIGDKRFEFLAFSSSQLRDNSVWMFASR 59
Query: 368 YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 427
GLTA +IR+WMG F++IRNVAKYAARLGQSF SS+ETLSV E+E+IPDV + T
Sbjct: 60 PGLTANDIRKWMGEFQQIRNVAKYAARLGQSFGSSRETLSVGRHEVEVIPDVVCSLHGTN 119
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMR 487
Y+FSDGIGK+SA+FAR+VA KCGL+ P S FQIRYGGYKGVVA DP SS KLSLR+SM
Sbjct: 120 YIFSDGIGKISADFARRVAIKCGLQYTPFS-FQIRYGGYKGVVAVDPYSSMKLSLRNSML 178
Query: 488 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 547
KYES KLDVL WSKYQPC+LNRQL++LLSTLG+ D++FE+KQ EAV QLDAIL D LK
Sbjct: 179 KYESNNIKLDVLGWSKYQPCYLNRQLVTLLSTLGVKDDVFEQKQNEAVDQLDAILHDSLK 238
Query: 548 AQEAL 552
AQEAL
Sbjct: 239 AQEAL 243
>gi|413954935|gb|AFW87584.1| hypothetical protein ZEAMMB73_985632 [Zea mays]
Length = 1241
Score = 353 bits (907), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 252/716 (35%), Positives = 375/716 (52%), Gaps = 77/716 (10%)
Query: 23 KINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIFQKGIRSPDLLY 82
K+ F L+H+ E + D L+++L AP ++ + S D ++
Sbjct: 250 KLEFALAHVTEALAFQAD-----------------DSLVLRLSAAPLVYYR--TSGDDVH 290
Query: 83 ESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLEL-----PDFKENFAYYK 137
F + DD W+RTTD T S IG+ L YR+ P + +
Sbjct: 291 GRVPFQLV-DADDDPWIRTTDVTQSGAIGRC------LAYRVSFAVQFWPTMRVALECMQ 343
Query: 138 ES------EDR-----FVLETGSAYS--RSLDLVPIVGPPDGIALPYEILFKINLLVQNG 184
DR VLE R P D L + L+ +N+L+ NG
Sbjct: 344 RQGVPVHVRDRRCRGFTVLEEAGLVQPMRDAFFSPRHEHDDDAGLRFPELYLVNVLMHNG 403
Query: 185 CVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK-ECCYEPSRWLTDQYRKY---- 239
V + F+ L+ R V+++ AL +L+ K C P L + +
Sbjct: 404 VVNPHQMTPEFFGLLMRTREDVNVA----ALTELFGAKLGVCDNPCWRLKNAQDRAAKNL 459
Query: 240 -MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRIS 298
+ RS SS D V R+ VTP+R Y P++ SNRV+RH+ D FLR++
Sbjct: 460 DLVCRSSSSSRRRKASDCDAEVRRLIVTPTREYCIPPQVERSNRVIRHYHELSDRFLRVT 519
Query: 299 FIDEDLDKIHSTDLSPRG-----SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
F DE + ++ L+ R + +T T +Y R+ + L G+++ R++ FLAFS+
Sbjct: 520 FTDEGMLPLNPNALTLRAVPSTSTPSTSRQMTSVYRRVQTALTEGLIMCGRRYSFLAFSA 579
Query: 354 SQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI 413
SQL++ SAW FA T A I+EWMG F IRN AK+AAR+G F+SS T+++ E+
Sbjct: 580 SQLKQKSAWFFAEDGATTVAGIKEWMGQF-PIRNPAKHAARMGLCFTSSYATVTMQPGEV 638
Query: 414 EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAA 472
+ D++ ++ + Y FSDGIG ++ + A +VA L D PSA+QIRY G+KGVVA
Sbjct: 639 D--EDLE-DVTRNGYNFSDGIGVITEDLALEVAEMLPLADRFAPSAYQIRYAGFKGVVAV 695
Query: 473 DPTS-------SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE 525
P ++++SLR SMRK+ES T L+V++W+K+QP FLNRQ+I+LL+TLG+ D+
Sbjct: 696 WPPGPGQEDRGTRRMSLRPSMRKFESTHTVLEVVSWTKFQPAFLNRQIITLLTTLGVPDD 755
Query: 526 IFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQ 585
F + Q + +L +L+D A E + + S E + +L G+ P EP L ML
Sbjct: 756 AFWQLQEAMLGKLRRVLSDSDVAYEVV-INSCPEQGSTAGLMLGAGFAPATEPHLRAMLL 814
Query: 586 TFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS--GAGYRQLHGESSLF 643
S++ L KT IF+P GR +MGCLDE L GQ F+++S G R ++ S +F
Sbjct: 815 AICTSQMQGLLNKTWIFVPKGRWLMGCLDEFGILEQGQCFLRVSTPSVGSRCVN-RSPIF 873
Query: 644 SSS--RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
S ++ G VV+AKNPCLHPGDVR+L+AV+VP L+H+VDC VFP+KG R
Sbjct: 874 PSEYKGDADAQVITGTVVMAKNPCLHPGDVRILEAVDVPDLYHLVDCFVFPKKGER 929
>gi|83773394|dbj|BAE63521.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1458
Score = 324 bits (831), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 193/549 (35%), Positives = 307/549 (55%), Gaps = 40/549 (7%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ LP+++ +++ + + NG ++ + F + ++ +EH K K+ Y
Sbjct: 439 VHLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAK----KQVYY 494
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
+P + ++ K +T P Y+H ++TPS +Y+ P +++SNRV+R
Sbjct: 495 DPMKIFDLKFIKGVTQAKIPPY--------CCYMHSARITPSTIYYNTPTVDISNRVIRR 546
Query: 287 FRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
F D FLR+ F DE L +I+ST TD T I+TRI L NGI+IGDR+
Sbjct: 547 FIEHADRFLRVRFTDEKLLGRINST---------TDSTMDEIFTRIKRALTNGIVIGDRR 597
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
+EFLAF +SQ RE A+ FA LTAA IR WMG+F IRNVAK+AARLGQ FS+++
Sbjct: 598 YEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAI 657
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIR 462
+D ++I ++ + Y FSDG+G++S A+ S+ +K PPSAFQ R
Sbjct: 658 AGCPVDVVKI-----EDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFR 712
Query: 463 YGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
GG KG++A + ++ + +R S K+ + L+++ WS++ LNRQLI +LSTLG
Sbjct: 713 LGGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLG 772
Query: 522 IWDEIFEKKQREAVRQLD-AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFL 580
I D++F K ++ LD A+ +DP + + P + T + ++++ G++ EPFL
Sbjct: 773 IPDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFL 832
Query: 581 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 640
+ +L +RA L L+ K RI + G ++GC+DET L G ++ G +
Sbjct: 833 TSVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTA 891
Query: 641 SL----FSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 693
+L SR ++ +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VV PQ
Sbjct: 892 ALPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQ 951
Query: 694 KGMRYILTM 702
G R I +M
Sbjct: 952 TGDRDIASM 960
>gi|391863075|gb|EIT72389.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1458
Score = 324 bits (831), Expect = 9e-86, Method: Compositional matrix adjust.
Identities = 193/549 (35%), Positives = 307/549 (55%), Gaps = 40/549 (7%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ LP+++ +++ + + NG ++ + F + ++ +EH K K+ Y
Sbjct: 439 VHLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAK----KQVYY 494
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
+P + ++ K +T P Y+H ++TPS +Y+ P +++SNRV+R
Sbjct: 495 DPMKIFDLKFIKGVTQAKIPPY--------CCYMHSARITPSTIYYNTPTVDISNRVIRR 546
Query: 287 FRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
F D FLR+ F DE L +I+ST TD T I+TRI L NGI+IGDR+
Sbjct: 547 FIEHADRFLRVRFTDEKLLGRINST---------TDSTMDEIFTRIKRALTNGIVIGDRR 597
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
+EFLAF +SQ RE A+ FA LTAA IR WMG+F IRNVAK+AARLGQ FS+++
Sbjct: 598 YEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAI 657
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIR 462
+D ++I ++ + Y FSDG+G++S A+ S+ +K PPSAFQ R
Sbjct: 658 AGCPVDVVKI-----EDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFR 712
Query: 463 YGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
GG KG++A + ++ + +R S K+ + L+++ WS++ LNRQLI +LSTLG
Sbjct: 713 LGGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLG 772
Query: 522 IWDEIFEKKQREAVRQLD-AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFL 580
I D++F K ++ LD A+ +DP + + P + T + ++++ G++ EPFL
Sbjct: 773 IPDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFL 832
Query: 581 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 640
+ +L +RA L L+ K RI + G ++GC+DET L G ++ G +
Sbjct: 833 TSVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTA 891
Query: 641 SL----FSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 693
+L SR ++ +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VV PQ
Sbjct: 892 ALPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQ 951
Query: 694 KGMRYILTM 702
G R I +M
Sbjct: 952 TGDRDIASM 960
>gi|317151427|ref|XP_001824654.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus oryzae RIB40]
Length = 1403
Score = 324 bits (831), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 192/548 (35%), Positives = 305/548 (55%), Gaps = 38/548 (6%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ LP+++ +++ + + NG ++ + F + ++ +EH K K+ Y
Sbjct: 384 VHLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAK----KQVYY 439
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
+P + ++ K +T P Y+H ++TPS +Y+ P +++SNRV+R
Sbjct: 440 DPMKIFDLKFIKGVTQAKIPPY--------CCYMHSARITPSTIYYNTPTVDISNRVIRR 491
Query: 287 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 346
F D FLR+ F DE L R +S TD T I+TRI L NGI+IGDR++
Sbjct: 492 FIEHADRFLRVRFTDEKL--------LGRINSTTDSTMDEIFTRIKRALTNGIVIGDRRY 543
Query: 347 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 406
EFLAF +SQ RE A+ FA LTAA IR WMG+F IRNVAK+AARLGQ FS+++
Sbjct: 544 EFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAIA 603
Query: 407 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRY 463
+D ++I ++ + Y FSDG+G++S A+ S+ +K PPSAFQ R
Sbjct: 604 GCPVDVVKI-----EDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFRL 658
Query: 464 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 522
GG KG++A + ++ + +R S K+ + L+++ WS++ LNRQLI +LSTLGI
Sbjct: 659 GGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLGI 718
Query: 523 WDEIFEKKQREAVRQLD-AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS 581
D++F K ++ LD A+ +DP + + P + T + ++++ G++ EPFL+
Sbjct: 719 PDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFLT 778
Query: 582 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS 641
+L +RA L L+ K RI + G ++GC+DET L G ++ G ++
Sbjct: 779 SVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTAA 837
Query: 642 L----FSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 694
L SR ++ +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VV PQ
Sbjct: 838 LPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQT 897
Query: 695 GMRYILTM 702
G R I +M
Sbjct: 898 GDRDIASM 905
>gi|238505489|ref|XP_002383969.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
gi|220690083|gb|EED46433.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus flavus
NRRL3357]
Length = 1353
Score = 323 bits (829), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 193/549 (35%), Positives = 307/549 (55%), Gaps = 40/549 (7%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ LP+++ +++ + + NG ++ + F + ++ +EH K K+ Y
Sbjct: 334 VHLPFQVRYQLEVCISNGYLSEFTMTREFAVKLSELGETQAVKLLEHVSAK----KQVYY 389
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
+P + ++ K +T P Y+H ++TPS +Y+ P +++SNRV+R
Sbjct: 390 DPMKIFDLKFIKGVTQAKIPPY--------CCYMHSARITPSTIYYNTPTVDISNRVIRR 441
Query: 287 FRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
F D FLR+ F DE L +I+ST TD T I+TRI L NGI+IGDR+
Sbjct: 442 FIEHADRFLRVRFTDEKLLGRINST---------TDSTMDEIFTRIKRALTNGIVIGDRR 492
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
+EFLAF +SQ RE A+ FA LTAA IR WMG+F IRNVAK+AARLGQ FS+++
Sbjct: 493 YEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFNSIRNVAKHAARLGQCFSTTRAI 552
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIR 462
+D ++I ++ + Y FSDG+G++S A+ S+ +K PPSAFQ R
Sbjct: 553 AGCPVDVVKI-----EDVERNGYNFSDGVGRISRFLAQMSMSELKIKTPTGEPPSAFQFR 607
Query: 463 YGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
GG KG++A + ++ + +R S K+ + L+++ WS++ LNRQLI +LSTLG
Sbjct: 608 LGGCKGMLAVSSEAQRQEVHIRKSQFKFAAIHNGLEIVRWSQFSMATLNRQLIIVLSTLG 667
Query: 522 IWDEIFEKKQREAVRQLD-AILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFL 580
I D++F K ++ LD A+ +DP + + P + T + ++++ G++ EPFL
Sbjct: 668 IPDQVFHAKLHTMLQGLDQALESDPQAIYWLKKYVDPNQMTLTISQMVLDGFRRSKEPFL 727
Query: 581 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 640
+ +L +RA L L+ K RI + G ++GC+DET L G ++ G +
Sbjct: 728 TSVLTLWRAWHLKYLKEKARIAVDQGACLLGCMDETGLLQ-GYFHDKVPGNDASVEEKTA 786
Query: 641 SL----FSSSR---SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 693
+L SR ++ +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VV PQ
Sbjct: 787 ALPEIFVQVSRPEADKKSEVIEGVCILARNPSLHPGDIRVVRAVNVPQLRHLQDVVVLPQ 846
Query: 694 KGMRYILTM 702
G R I +M
Sbjct: 847 TGDRDIASM 855
>gi|121704872|ref|XP_001270699.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
gi|119398845|gb|EAW09273.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus clavatus
NRRL 1]
Length = 1428
Score = 321 bits (822), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 195/561 (34%), Positives = 312/561 (55%), Gaps = 66/561 (11%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ LP+ + +++ + + + ++ + F + ++ +EH K KE +
Sbjct: 415 VHLPFPVRYQLEVCISHNYLSEFTMTRGFAIKLSGLGEAEALRLLEHVATK----KEVFH 470
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
P + ++ K +T PS Y+ ++TP+ +Y+ P +++SNRV+RH
Sbjct: 471 NPMKIFDLKFVKGVTHAKIPSY--------CCYMRSARITPTTIYYNTPSVDISNRVIRH 522
Query: 287 FRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+ D FLR+ F DE L +I+ST D T ++TRI L NGI++GDR+
Sbjct: 523 YIEFADRFLRVRFTDEKLFGRINST---------MDDTMDEVFTRIKRALANGIVVGDRR 573
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
+EFLAF +SQ RE A+ FA LTAA IR WMG F +IRNVAK+AARLGQ FS+++
Sbjct: 574 YEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGTFNDIRNVAKHAARLGQCFSTTR-A 632
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIR 462
+S +I I DV + Y FSDG+G++S A+ VAS+ +K D PPSAFQ R
Sbjct: 633 ISGCPVQIHKIDDVV----RNGYTFSDGVGRISRFLAQMVASELKIKTPIDEPPSAFQFR 688
Query: 463 YGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
GG KG++ P + + ++ +R S K+ + L+++ WS++ LNRQLI +LS+LG
Sbjct: 689 LGGCKGMLTVSPEAQRHEVHIRKSQYKFAAAHNGLEIIRWSQFSMATLNRQLIIVLSSLG 748
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFL 580
I D++F +K + +R L+ + +A L + + P + T + ++++ G++ EPF+
Sbjct: 749 IPDQVFHEKLQAMLRSLNEAMESDSQAIYWLKKYVDPNQMTLTVSQMVLDGFRRTQEPFV 808
Query: 581 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-------------------NY 621
+ +L+ +RA L L+ K +I I G +++GC+DET L +
Sbjct: 809 TSVLRLWRAWHLKYLKEKAKIAIDKGANLLGCMDETGILKGYFENVPAKDAPREKKLTSL 868
Query: 622 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
+VFVQI LH ES + I++G+ ++A+NP LHPGD+RV++AVNVP
Sbjct: 869 PEVFVQI-------LHPESGKYQ--------IIEGVCILARNPSLHPGDIRVVRAVNVPE 913
Query: 682 LHHMVDCVVFPQKGMRYILTM 702
L H+ D VVFPQ G R + +M
Sbjct: 914 LSHLKDVVVFPQTGDRDVPSM 934
>gi|315047102|ref|XP_003172926.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311343312|gb|EFR02515.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1455
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 186/544 (34%), Positives = 305/544 (56%), Gaps = 40/544 (7%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
+ Y + +++ + + +G ++ +D F + ++ + +E+ + H K ++P
Sbjct: 396 ISYVVRYQLEVCISHGLLSEYAIDKEFAKKLESLGERDAKDLLEY----VAHEKVVYHDP 451
Query: 229 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 288
+ Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 452 MKIFDIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFHTPTVDTSNRVIRHYI 503
Query: 289 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 348
D FLR+ F DE + R +S + ++TR+ T+ NG+++GDR +EF
Sbjct: 504 EYADRFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGVIVGDRHYEF 555
Query: 349 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS- 407
LAF +SQ RE A+ FAS LTA+ IR WMG+F +I+ VAK+AARLGQ FSS+K
Sbjct: 556 LAFGNSQFREHGAYFFASLPNLTASNIRAWMGHFSDIKIVAKHAARLGQCFSSTKAVTGC 615
Query: 408 -VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRY 463
V + EI+ EI + Y FSDG+G++S A+ + ++ LK + PPS FQ R
Sbjct: 616 PVTIREID-------EIERNGYTFSDGVGRISKFLAQMIMTEFKLKTPSEEPPSVFQFRL 668
Query: 464 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 522
GG KG++ P + ++ + ++ S K+ + L+++ WS++ +LNRQLI +LS LG+
Sbjct: 669 GGCKGILTVSPEAQRREVHIKKSQYKFAAVHNGLEIIRWSQFAAAYLNRQLIVVLSALGV 728
Query: 523 WDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLS 581
DEIF KK R + ++ +T KA L+ + P + T +L +++ G++ ++PF++
Sbjct: 729 TDEIFIKKLRLMLEDMEQAMTSETKAMSLLQKQVDPNQMTLLLAQMVHDGFQGTSDPFVT 788
Query: 582 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFVQISGAGYRQLHGE- 639
+L+ +RA ++ L+ K +I I G + GCLDET TL Y + A Y + G
Sbjct: 789 SLLELWRAWQIKYLKEKAKICIDGGACLFGCLDETATLKGYHEKTRPSIDATYEERLGYL 848
Query: 640 ----SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
+F + R I++G ++A+NP LHPGD+RV++AVNVPALHH+ D +VF Q G
Sbjct: 849 PEIFVQVFDAEAERNYKIIEGPCILARNPSLHPGDIRVVRAVNVPALHHLKDVIVFSQTG 908
Query: 696 MRYI 699
R +
Sbjct: 909 DRDV 912
>gi|115402503|ref|XP_001217328.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114189174|gb|EAU30874.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 1309
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 198/561 (35%), Positives = 307/561 (54%), Gaps = 39/561 (6%)
Query: 154 SLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH 213
S+ LV ++ D I LP+ + +++ + + NG ++ + F + + +EH
Sbjct: 355 SMALVDLIDH-DYIHLPFSVRYQLEVCISNGYLSEYAMTREFAVKLSELGETQATKLLEH 413
Query: 214 ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFC 273
+ K Y+P + ++ K T+ P Y+ +VTPS VY+
Sbjct: 414 VATQ----KRVYYDPMKIFDLKFIKGATNAKIPPY--------CCYIRSARVTPSTVYYE 461
Query: 274 GPEINVSNRVLRHFRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSSATDITRTRIYTRIL 332
P +++SNR++RH+ D FLR+ F DE L +I+ST TD T ++TR+
Sbjct: 462 TPSMDMSNRIIRHYIEYADRFLRVRFTDEKLLGRIYST---------TDNTMDEVFTRVK 512
Query: 333 STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYA 392
L NGI+IGDR++EFLAF +SQ RE A+ FA LTAA IR WMG+F +IRNVAK+A
Sbjct: 513 RALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGHFDDIRNVAKHA 572
Query: 393 ARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK 452
ARLGQ FS+++ + EI +I + Y FSDG+G++S A+ V S+ +K
Sbjct: 573 ARLGQCFSTTRAIFGCPIKVQEI-----DDIVRNGYRFSDGVGRISKFLAQMVMSELKIK 627
Query: 453 D---NPPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCF 508
PPS FQ R GG KG++ P + ++ + +R S K+ + L+++ WS++
Sbjct: 628 TPSGEPPSVFQFRLGGCKGILTVSPQAQRQEVHIRKSQAKFTATHNGLEIIRWSQFTAAS 687
Query: 509 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKEL 567
LNRQLI +LSTLGI D IF +K R + L+ L + KA L + P + T + ++
Sbjct: 688 LNRQLIIVLSTLGIRDRIFHEKLRAVLWGLNEALKNDAKAIHLLRRYVDPNQRTLTISQM 747
Query: 568 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFV 626
++ G++ EPF + +L +RA L L+ K +I I G + GC+DET TL Y +
Sbjct: 748 VVDGFRRTEEPFATSVLTLWRAWHLKYLKDKAKITIDKGACVFGCMDETGTLKGYFHEKI 807
Query: 627 QISGAGYRQ-LHGESSLF----SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
A + Q +F + + + ++QG+ ++A+NP LH GD+RV+KAV+VPA
Sbjct: 808 PDRDAPFEQRFAALPEIFLQIPNQDKGGKYEVIQGMCILARNPSLHSGDIRVVKAVDVPA 867
Query: 682 LHHMVDCVVFPQKGMRYILTM 702
L H+ D VV PQ G R I +M
Sbjct: 868 LRHLQDVVVLPQTGDRDIASM 888
>gi|302505092|ref|XP_003014767.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
gi|291178073|gb|EFE33864.1| hypothetical protein ARB_07328 [Arthroderma benhamiae CBS 112371]
Length = 1296
Score = 315 bits (807), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 181/544 (33%), Positives = 301/544 (55%), Gaps = 40/544 (7%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
+ Y + +++ + + +G ++ +D +F + ++ +E+ + K ++P
Sbjct: 227 ISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQE----KTVYHDP 282
Query: 229 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 288
Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 283 MEIFNIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYI 334
Query: 289 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 348
D FLR+ F DE + R +S + ++TR+ T+ NGI +GDR +EF
Sbjct: 335 EYADRFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEF 386
Query: 349 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS- 407
LAF +SQ RE A+ FAS LTAA IR WMG+F +I+ VAK+AARLGQ FS+++
Sbjct: 387 LAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGC 446
Query: 408 -VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRY 463
V + EI+ E+ + Y+FSDG+G++S A+ + ++ L+ + PPS FQ R
Sbjct: 447 PVTVREID-------EVERNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVFQFRL 499
Query: 464 GGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 522
GG KG++ P + ++ + +R S K+ + L+++ WS++ LNRQLI +LS LG+
Sbjct: 500 GGCKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGV 559
Query: 523 WDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLS 581
D IF +K R + L+ +T KA L+ + P + T +L +++ G++ +PF+
Sbjct: 560 SDNIFIEKLRLMLEDLEQAMTSETKAMSMLQKRVDPNQMTLLLAQMVHDGFQGSCDPFVK 619
Query: 582 MMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN--YGQVFVQISGAGYRQLHGE 639
+L+ +RA ++ L+ K ++FI G + GCLDET TL Y + I +L
Sbjct: 620 SLLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYEERLEYL 679
Query: 640 SSL----FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
+ F + ++ +++G ++A+NP LHPGD+RV++AVNVPALHH+ D +VFPQ G
Sbjct: 680 PEIFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTG 739
Query: 696 MRYI 699
R +
Sbjct: 740 DRDV 743
>gi|119493033|ref|XP_001263772.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
gi|119411932|gb|EAW21875.1| RNA-directed RNA polymerase (Sad-1), putative [Neosartorya fischeri
NRRL 181]
Length = 1599
Score = 315 bits (806), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 188/552 (34%), Positives = 312/552 (56%), Gaps = 36/552 (6%)
Query: 161 VGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH 220
+G + LP+ + +++ + + + ++ + F + ++ +EH K
Sbjct: 578 LGDESYVHLPFPVRYQLEVCLSHNYLSEFTMTREFAVKLLELGESEAVKLLEHVAIK--- 634
Query: 221 LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVS 280
KE ++P + ++ K T PS Y+ ++TP+ +Y+ P +++S
Sbjct: 635 -KEVYHDPMKIFDLKFAKGSTRAKIPSY--------CCYMRSARITPTTIYYNTPSVDIS 685
Query: 281 NRVLRHFRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGI 339
NRV+R++ D FLR+ F DE L +I+ST D T ++TRI L NGI
Sbjct: 686 NRVIRYYIEYADRFLRVRFTDEKLLGRINST---------VDNTMDEVFTRIKRALANGI 736
Query: 340 LIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSF 399
+IGDR++EFLAF +SQ RE A+ FA LTAA IR WMG F +IRNVAK+AARLGQ F
Sbjct: 737 VIGDRRYEFLAFGNSQFREHGAYFFAPLPNLTAANIRAWMGTFNDIRNVAKHAARLGQCF 796
Query: 400 SSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPP 456
S+++ + +I +I DV ++ G Y FSDG+G++S A+ AS+ +K D+PP
Sbjct: 797 STTRAIAGCPV-QIRLIDDV-VQNG---YTFSDGVGRISKFLAQMAASELKIKTPSDDPP 851
Query: 457 SAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 515
SAFQ R GG KG++ P + ++ + +R S K+ + L+++ WS+Y LNRQLI
Sbjct: 852 SAFQFRLGGCKGMLTVSPEAQRQEVHIRKSQYKFAAVHNGLEIIRWSQYSMATLNRQLII 911
Query: 516 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKP 574
+LS+LGI D +F K R ++ L+ + +A L + + P + T ++ ++++ G++
Sbjct: 912 VLSSLGIQDRVFHDKLRAMLQSLNEAMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRS 971
Query: 575 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFVQISGAGY 633
EPF++ +++ ++A L L+ K +I I G +++GC+DET L Y + +
Sbjct: 972 SREPFVTSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSERVPAKGASDE 1031
Query: 634 RQLHGESSLF---SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVV 690
+L +F + + +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VV
Sbjct: 1032 EKLAALPEIFVQIHRPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHLKDVVV 1091
Query: 691 FPQKGMRYILTM 702
FPQ G R I +M
Sbjct: 1092 FPQTGDRDIPSM 1103
>gi|258573507|ref|XP_002540935.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901201|gb|EEP75602.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1521
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 194/555 (34%), Positives = 310/555 (55%), Gaps = 48/555 (8%)
Query: 165 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLYHLKE 223
D I LPY + +++ + + +G ++ + +F + + +EH A +KL +
Sbjct: 488 DYIPLPYSVRYQLEVCLSHGLLSEYTIGKDFTTTLAALGETNARELLEHVAGEKLVY--- 544
Query: 224 CCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRV 283
Y+P + + K TSR P Y+ +VTPS VYF P +++SNRV
Sbjct: 545 --YDPMKIFDILFVKPATSRRIPKY--------CCYMRTARVTPSTVYFNTPSVDISNRV 594
Query: 284 LRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGD 343
+RH+ D FLR+ F DE + R S + + T ++TRI + NGI +GD
Sbjct: 595 IRHYIEYADRFLRVRFTDERFEG--------RISPSHNNTMDEVFTRIKRAMMNGITLGD 646
Query: 344 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 403
R +EFLAF +SQ RE A+ FAS LTA+ IR WMG+F +I+ +A++AARLGQ FS+++
Sbjct: 647 RHYEFLAFGNSQFREHGAYFFASLPHLTASNIRAWMGHFSDIKEIARHAARLGQCFSTTR 706
Query: 404 ETLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR------KVASKCGLKDNP 455
V + EIE +I + + FSDG+G++S A+ K+ + CG P
Sbjct: 707 AVTGCPVQIREIE-------DIERNGHTFSDGVGRISRFLAQMIMTEFKIKTPCG---EP 756
Query: 456 PSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 514
PS FQ R GG KG++ P + ++ + +R S K+ + L+V+ S + LNRQLI
Sbjct: 757 PSVFQFRLGGCKGILTVSPEAQRREVHIRKSQYKFPAIHNGLEVIRHSHFSMASLNRQLI 816
Query: 515 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYK 573
+LS L + DEIF +K R + L+ ++ +A L + + P + T +L E++ G++
Sbjct: 817 VVLSALEVPDEIFIEKLRVMLENLELAMSSEAQAIHLLHKYVDPNQMTLVLAEMVQDGFQ 876
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFVQISGAG 632
EPF++ +L+ +RA ++ L+ K +I I +G + GCLDET TL + + + A
Sbjct: 877 ASKEPFVTSLLELWRAWQIKYLKEKAKIIIEDGACLFGCLDETGTLKGFFNDKIPAANAS 936
Query: 633 YRQ-LHGESSLF---SSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 687
Y + L +F S + + ++ +++G +VA+NP LHPGD+RV+KAVNVPALHH+ D
Sbjct: 937 YEEKLESLPEVFVQISRADNGGKYEVIEGPCIVARNPSLHPGDIRVVKAVNVPALHHLKD 996
Query: 688 CVVFPQKGMRYILTM 702
VVFPQ G + + +M
Sbjct: 997 VVVFPQTGDKDVPSM 1011
>gi|302658845|ref|XP_003021121.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
gi|291185002|gb|EFE40503.1| hypothetical protein TRV_04770 [Trichophyton verrucosum HKI 0517]
Length = 1587
Score = 313 bits (801), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 179/542 (33%), Positives = 298/542 (54%), Gaps = 36/542 (6%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
+ Y + +++ + + +G ++ +D +F + ++ +E+ + K ++P
Sbjct: 518 ISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQE----KTVYHDP 573
Query: 229 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 288
Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 574 MEIFNIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYI 625
Query: 289 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 348
D FLR+ F DE + R +S + ++TR+ T+ NGI +GDR +EF
Sbjct: 626 EYADRFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEF 677
Query: 349 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV 408
LAF +SQ RE A+ FAS LTAA IR WMG+F +I+ AK+AARLGQ FS+++
Sbjct: 678 LAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIAAKHAARLGQCFSTTRAVTGC 737
Query: 409 HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRYGG 465
+ EI E+ + Y+FSDG+G++S A+ + ++ L+ + PPS FQ R GG
Sbjct: 738 PVTVREI-----DEVERNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGG 792
Query: 466 YKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 524
KG++ P + ++ + +R S K+ + L+++ WS++ LNRQLI +LS LG+ D
Sbjct: 793 CKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSD 852
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSMM 583
IF +K R + L+ +T KA L+ + P + T +L +++ G++ +PF+ +
Sbjct: 853 NIFIEKLRLMLEDLEQAMTSETKAMSMLQKRVDPNQMTLLLAQMVHDGFQGSCDPFVKSL 912
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN--YGQVFVQISGAGYRQLHGESS 641
L+ +RA ++ L+ K ++FI G + GCLDET TL Y + I +L
Sbjct: 913 LELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYEERLEYLPE 972
Query: 642 L----FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+ F + ++ +++G ++A+NP LHPGD+RV++AVNVPALHH+ D +VFPQ G R
Sbjct: 973 IFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDR 1032
Query: 698 YI 699
+
Sbjct: 1033 DV 1034
>gi|327305981|ref|XP_003237682.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
gi|326460680|gb|EGD86133.1| RNA-directed RNA polymerase [Trichophyton rubrum CBS 118892]
Length = 1604
Score = 311 bits (796), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 178/542 (32%), Positives = 298/542 (54%), Gaps = 36/542 (6%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
+ Y + +++ + + +G ++ +D +F + ++ +E+ + K ++P
Sbjct: 536 ISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQE----KTVYHDP 591
Query: 229 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 288
Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 592 MEIFNIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHYI 643
Query: 289 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 348
D FLR+ F DE + R +S + ++TR+ T+ NGI +GDR +EF
Sbjct: 644 EYADRFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGITVGDRHYEF 695
Query: 349 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV 408
LAF +SQ RE A+ FAS LTAA IR WMG+F +I+ VAK+AARLGQ FS+++
Sbjct: 696 LAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTGC 755
Query: 409 HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRYGG 465
+ I E+ + Y+FSDG+G++S A+ + ++ L+ + PPS FQ R GG
Sbjct: 756 PVTVRTI-----DEVERNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLGG 810
Query: 466 YKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 524
KG++ P + ++ + +R S K+ + L+++ WS++ LNRQLI +LS LG+ D
Sbjct: 811 CKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSD 870
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSMM 583
EIF +K R + ++ +T KA L+ + P + T + +++ G++ +PF+ +
Sbjct: 871 EIFIQKLRLMLEDMEQAMTSETKAMSMLQKRVDPNQMTLLPAQMVHDGFQGSCDPFVKSL 930
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN--YGQVFVQISGAGYRQLHGESS 641
L+ +RA ++ L+ K ++FI G + GCLDET TL Y + I +L
Sbjct: 931 LELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYYEKKRPSIEATYEERLEYLPE 990
Query: 642 L----FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+ F + ++ +++G ++A+NP LHPGD+RV++AVNVPALHH+ D +VFPQ G R
Sbjct: 991 IFVQVFDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDR 1050
Query: 698 YI 699
+
Sbjct: 1051 DV 1052
>gi|326471540|gb|EGD95549.1| RNA-directed RNA polymerase [Trichophyton tonsurans CBS 112818]
Length = 1605
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 181/557 (32%), Positives = 302/557 (54%), Gaps = 66/557 (11%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLYHLKECCYE 227
+ Y + +++ + + +G ++ +D +F + ++ +E+ A +K +L +
Sbjct: 537 ISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYL-----D 591
Query: 228 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 287
P Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 592 PMEIFNIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHY 643
Query: 288 RRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFE 347
D FLR+ F DE + R +S + ++TR+ T+ NGI +GDR +E
Sbjct: 644 IEYADKFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGITVGDRHYE 695
Query: 348 FLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS 407
FLAF +SQ RE A+ FAS LTAA IR WMG+F +I+ VAK+AARLG+ FS+++
Sbjct: 696 FLAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGRCFSTTRAVTG 755
Query: 408 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRYG 464
+ EI E+ + Y+FSDG+G++S A+ + ++ L+ + PPS FQ R G
Sbjct: 756 CPVTVREI-----DEVERNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLG 810
Query: 465 GYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIW 523
G KG++ P + ++ + +R S K+ + L+++ WS++ LNRQLI +LS LG+
Sbjct: 811 GCKGILTVSPEAQRREVHIRKSQYKFAAIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVS 870
Query: 524 DEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSM 582
DEIF +K R + ++ +T KA L+ + P + T IL +++ G++ +PF+
Sbjct: 871 DEIFIQKLRLMLEDMEQAMTSETKAMSMLQKRVDPNQMTLILAQMVHDGFQGSCDPFVKS 930
Query: 583 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN--------------------YG 622
+L+ +RA ++ L+ K ++FI G + GCLDET TL
Sbjct: 931 LLELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYHEKKRPSIEATYEERLEYLP 990
Query: 623 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
++FVQ+ F + ++ +++G ++A+NP LHPGD+RV++AV+VPAL
Sbjct: 991 EIFVQV--------------FDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVDVPAL 1036
Query: 683 HHMVDCVVFPQKGMRYI 699
HH+ D +VFPQ G R +
Sbjct: 1037 HHLKDVIVFPQTGDRDV 1053
>gi|222618586|gb|EEE54718.1| hypothetical protein OsJ_02054 [Oryza sativa Japonica Group]
Length = 1571
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 212/606 (34%), Positives = 312/606 (51%), Gaps = 46/606 (7%)
Query: 76 RSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAY 135
R+ D + PV F DD W+RTTD TPS IG+ + R P Y
Sbjct: 637 RTADDDFHEPV-PFDLLDDDDPWIRTTDITPSGAIGRCGVYRISFSARF-WPKMDRALDY 694
Query: 136 YKESEDRFVLETGSAYS--RSL-------------DLVPIVGPPDGIALPYEILFKINLL 180
+E +++ G + R L D+ + +G+ P +LF +N L
Sbjct: 695 MRERR-VAIVDCGGGWGPRRGLTVRDELEFGEPMQDVFFCLQHAEGLKFP--LLFMVNAL 751
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
V G + L F+ L+ V+++ + + + + C + L R
Sbjct: 752 VHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARN-- 809
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
P + D V R+ +TP+R Y PE+ SNRVLRH+ D FLR++F+
Sbjct: 810 -----PKLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFM 864
Query: 301 DEDLDKIHSTDL-SPRGSSATDI------TRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
DE + +++ L S D+ +T +Y R+ L G + RK+ FLAFSS
Sbjct: 865 DEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSS 924
Query: 354 SQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI 413
+QLR+ SAW FA T IR+WMG F +NVAK+AAR+GQ FSS+ T+++ DE+
Sbjct: 925 NQLRDKSAWFFAEDRKTTVEAIRKWMGRFTS-KNVAKHAARMGQCFSSTYATVTMRPDEV 983
Query: 414 EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA- 472
+ D ++ +Y+FSDGIGK++ + A +VA + L DNPPSA+QIR+ G+KGV+A
Sbjct: 984 DESFD---DVVHNEYIFSDGIGKITPDLALEVAERLQLTDNPPSAYQIRFAGFKGVIAVW 1040
Query: 473 -DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 531
+L LR SMRK+ES L+V++W+K+QP FLNRQ+I LLS+L + D IF + Q
Sbjct: 1041 QGHGDGTRLFLRPSMRKFESNHLVLEVVSWTKFQPGFLNRQIIILLSSLNVPDSIFWQMQ 1100
Query: 532 REAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASK 591
+ L+ IL+D A E L S ++ N +L G++P EP L ML R+++
Sbjct: 1101 ETMLSNLNNILSDRDVAFEVLT-TSCADDGNTAALMLSAGFEPRTEPHLKAMLLAIRSAQ 1159
Query: 592 LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI---SGAGYRQLHGESSLFSSSRS 648
L +L K RIF+P GR +MGCLDE L GQ F++ S Y HG S FSS+
Sbjct: 1160 LQDLLEKARIFVPKGRWLMGCLDELGVLEQGQCFIRATVPSLNSYFVKHG--SRFSSTDK 1217
Query: 649 RQRFIV 654
I+
Sbjct: 1218 NTEVIL 1223
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/319 (28%), Positives = 138/319 (43%), Gaps = 34/319 (10%)
Query: 76 RSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAY 135
R+ D + PV F DD W+RTTD TPS IG+ + R P Y
Sbjct: 204 RTADDDFHEPV-PFDLLDDDDPWIRTTDITPSGAIGRCGVYRISFSARF-WPKMDRALDY 261
Query: 136 YKESEDRFVLETGSAYS--RSL-------------DLVPIVGPPDGIALPYEILFKINLL 180
+E +++ G + R L D+ + +G+ P +LF +N L
Sbjct: 262 MRERR-VAIVDCGGGWGPRRGLTVRDELEFGEPMQDVFFCLQHAEGLKFP--LLFMVNAL 318
Query: 181 VQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYM 240
V G + L F+ L+ V+++ + + + + C + L R
Sbjct: 319 VHKGIINQHQLTPEFFSLLGRSEENVNVAALRDFWGDKFPVFDACGRLKKALNRVARN-- 376
Query: 241 TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFI 300
P + D V R+ +TP+R Y PE+ SNRVLRH+ D FLR++F+
Sbjct: 377 -----PKLLCSKVGDDHAEVRRLVITPTRAYCLPPEVERSNRVLRHYHEVADRFLRVTFM 431
Query: 301 DEDLDKIHSTDL-SPRGSSATDI------TRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
DE + +++ L S D+ +T +Y R+ L G + RK+ FLAFSS
Sbjct: 432 DEGMQVLNNNVLNSFTAPIVKDLMSNFFQQKTTVYKRVRMLLTEGFHMCGRKYSFLAFSS 491
Query: 354 SQLRESSAWMFASRYGLTA 372
+QLR+ SAW FA TA
Sbjct: 492 NQLRDKSAWFFAEDRKTTA 510
>gi|146323311|ref|XP_754927.2| RNA-directed RNA polymerase (Sad-1) [Aspergillus fumigatus Af293]
gi|129558353|gb|EAL92889.2| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus
fumigatus Af293]
Length = 1423
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 184/543 (33%), Positives = 306/543 (56%), Gaps = 36/543 (6%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ LP+ + +++ + + + ++ + F + ++ +EH K +E +
Sbjct: 408 VHLPFPVRYQLEVCLSHNYLSEFTMSREFAVKLLNLGESEAVKLLEHVAIK----EEVYH 463
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
+P + ++ K T PS Y+ ++TP+ +Y+ P +++SNRV+R+
Sbjct: 464 DPMKIFDLKFAKGSTRAKIPSY--------CCYMRSARITPTTIYYNTPSVDISNRVIRY 515
Query: 287 FRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+ D FLR+ F DE L +I+ST D T ++TRI L NGI+IGDR+
Sbjct: 516 YIEYADRFLRVRFTDEKLLGRINST---------IDNTMDEVFTRIKRALANGIVIGDRR 566
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
+EFLAF +SQ RE A+ FA LTAA IR WMG F +IRNVAK+AARLGQ FS+++
Sbjct: 567 YEFLAFGNSQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAI 626
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIR 462
+ +I +I DV + Y FSDG+G++S A+ AS+ ++ +PPSAFQ R
Sbjct: 627 AGCPV-QIRLIDDVV----RNGYTFSDGVGRISKFLAQMAASELKIRTPSGDPPSAFQFR 681
Query: 463 YGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
GG KG++ P + ++ + +R S K+ S L+++ WS+Y LNRQLI +LS+LG
Sbjct: 682 LGGCKGMLTVSPEAQRQEVHIRKSQYKFASVHNGLEIIRWSQYSMATLNRQLIIVLSSLG 741
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFL 580
I D +F K R ++ L+ + +A L + + P + T ++ ++++ G++ EPF+
Sbjct: 742 IQDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSSREPFV 801
Query: 581 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG-YRQLHGE 639
+ +++ ++A L L+ K +I I G +++GC+DET L ++ GA +L
Sbjct: 802 TSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWIPAKGASDEEKLAAL 861
Query: 640 SSLF---SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 696
+F + + +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VVFPQ G
Sbjct: 862 PEIFVQIHHPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHLKDVVVFPQTGD 921
Query: 697 RYI 699
R I
Sbjct: 922 RDI 924
>gi|145245289|ref|XP_001394912.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus niger CBS 513.88]
gi|134079610|emb|CAK40827.1| unnamed protein product [Aspergillus niger]
Length = 1382
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 175/459 (38%), Positives = 270/459 (58%), Gaps = 29/459 (6%)
Query: 259 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 318
++ +TPS VY+ P +++SNR++R + D FLR+ F DE L R ++
Sbjct: 464 HMRSATITPSTVYYNLPSVDISNRIIRRYMEHADRFLRVRFTDEKL--------YGRINA 515
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
+D + I+TRI L NGI+IGDR++EFLAF +SQ RE A+ FA LTAA IR W
Sbjct: 516 RSDNSNDEIFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAW 575
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
MG+F +IRNVAKYAARLGQ FS+++ + +I IPDV+ + Y FSDG+GK+S
Sbjct: 576 MGHFSDIRNVAKYAARLGQCFSTTRAVAGCPV-QIRNIPDVE----RNGYTFSDGVGKIS 630
Query: 439 AEFARKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELT 494
A+ ++ +K PPSAFQ R GG KG++A + +++ +R+S K+ +
Sbjct: 631 RFLAQMAMTELKIKTPTGEPPSAFQFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHN 690
Query: 495 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-E 553
LD++ WS++ LNRQLI ++STLG+ DE+F K + +R LD + +A E L +
Sbjct: 691 GLDIIRWSQFSMATLNRQLILVMSTLGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKK 750
Query: 554 LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 613
+ P + T + +++ G++ EPFL+ +L +R + L+ K +I I G +++G +
Sbjct: 751 YVDPNQTTLTVSQMVSDGFRRSKEPFLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVM 810
Query: 614 DETRTLNYGQVFVQI---SGAGYRQLHGESSLF-------SSSRSRQRFIVQGLVVVAKN 663
DET L G + +I + ++L +F +S +++GL ++A+N
Sbjct: 811 DETGILK-GYFYDKIPKKDASLEQKLAALPEIFLQIPRSEASEDGATYEVIEGLCILARN 869
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
P LHPGD+RV++AVNVP LH + D VV PQ G R I +M
Sbjct: 870 PSLHPGDIRVVRAVNVPELHSLRDVVVLPQTGDRDIASM 908
>gi|159127939|gb|EDP53054.1| RNA-directed RNA polymerase (Sad-1), putative [Aspergillus
fumigatus A1163]
Length = 1423
Score = 310 bits (793), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 184/543 (33%), Positives = 306/543 (56%), Gaps = 36/543 (6%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ LP+ + +++ + + + ++ + F + ++ +EH K +E +
Sbjct: 408 VHLPFPVRYQLEVCLSHNYLSEFTMSREFAVKLLNLGESEAVKLLEHVAIK----EEVYH 463
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
+P + ++ K T PS Y+ ++TP+ +Y+ P +++SNRV+R+
Sbjct: 464 DPMKIFDLKFAKGSTRAKIPSY--------CCYMRSARITPTTIYYNTPSVDISNRVIRY 515
Query: 287 FRRDIDNFLRISFIDEDL-DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+ D FLR+ F DE L +I+ST D T ++TRI L NGI+IGDR+
Sbjct: 516 YIEYADRFLRVRFTDEKLLGRINST---------IDNTMDEVFTRIKRALANGIVIGDRR 566
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
+EFLAF +SQ RE A+ FA LTAA IR WMG F +IRNVAK+AARLGQ FS+++
Sbjct: 567 YEFLAFGNSQFREHGAYFFAPLPSLTAANIRAWMGTFNDIRNVAKHAARLGQCFSTTRAI 626
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD---NPPSAFQIR 462
+ +I +I DV + Y FSDG+G++S A+ AS+ ++ +PPSAFQ R
Sbjct: 627 AGCPV-QIRLIDDVV----RNGYTFSDGVGRISKFLAQMAASELKIRTPSGDPPSAFQFR 681
Query: 463 YGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
GG KG++ P + ++ + +R S K+ S L+++ WS+Y LNRQLI +LS+LG
Sbjct: 682 LGGCKGMLTVSPEAQRQEVHIRKSQYKFASVHNGLEIIRWSQYSMATLNRQLIIVLSSLG 741
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFL 580
I D +F K R ++ L+ + +A L + + P + T ++ ++++ G++ EPF+
Sbjct: 742 IQDSVFHDKLRAMLQSLNESMESDSQALCWLKKYVDPNQMTLVVSQMVLDGFRSSREPFV 801
Query: 581 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG-YRQLHGE 639
+ +++ ++A L L+ K +I I G +++GC+DET L ++ GA +L
Sbjct: 802 TSIMRLWKAWHLKYLKEKAKIVIEKGANLLGCMDETGILRGYSEWIPAKGASDEEKLAAL 861
Query: 640 SSLF---SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 696
+F + + +++G+ ++A+NP LHPGD+RV++AVNVP L H+ D VVFPQ G
Sbjct: 862 PEIFVQIHHPDTGKCEVIEGVCILARNPSLHPGDIRVVRAVNVPQLSHLKDVVVFPQTGD 921
Query: 697 RYI 699
R I
Sbjct: 922 RDI 924
>gi|260803900|ref|XP_002596827.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
gi|229282087|gb|EEN52839.1| hypothetical protein BRAFLDRAFT_99723 [Branchiostoma floridae]
Length = 1922
Score = 310 bits (793), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 192/463 (41%), Positives = 265/463 (57%), Gaps = 37/463 (7%)
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
+R+ + A L D VY +V VTP+++ F PE V NRV+R + +DNF+R++F D
Sbjct: 390 ARTTGPNDADDLPDHYVYARKVVVTPTQMLFLKPEPIVENRVVREY--GVDNFIRVAFRD 447
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
ED +K+ +P +S +T TR+ L+ GI IG R FE+L S+SQ+RE
Sbjct: 448 EDFNKL----TAPNPNSIKCVT-----TRVKDVLQRGIRIGGRHFEYLGSSNSQMREHGC 498
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE--IEIIPDV 419
WM+A+ T ++IR WMG+ R VA Y +RLGQ FSSS++ ++V +++ + +I DV
Sbjct: 499 WMYAAEDETTTSDIRAWMGDLSHERCVATYVSRLGQFFSSSRDAVNVSVEDRSVALIDDV 558
Query: 420 KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADPT--S 476
+ +Y FSDGIGK+S A KVA+ G+ +P PSAFQIRYGG KGV+A DP+
Sbjct: 559 TS--SQRRYTFSDGIGKISVPLAEKVAAALGV--SPVPSAFQIRYGGCKGVLAQDPSLGH 614
Query: 477 SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 536
+ + +R SM+K+ESE L+V + + LNRQ I+LLS LG+ DE F K Q +
Sbjct: 615 TDLIHIRGSMKKFESEHKTLEVTSVTTPGSLSLNRQAITLLSGLGVPDEEFFKLQERVLN 674
Query: 537 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596
QL +L A +AL G N L I EPF ML +++ EL
Sbjct: 675 QLAEMLLLDGAAVKALSGARVGINFQALHNSRIS---LTTEPFFRSMLLAVYRNQMGELL 731
Query: 597 TKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 654
+TRI +P GR MMG +DET L YGQVF+Q S R ++ +
Sbjct: 732 RRTRIQLPAGEGRIMMGTMDETGKLQYGQVFLQYSRETDRP------------QAEKIVH 779
Query: 655 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
QG V V KNPC HPGD+R AV+VP L HMVDC+VFP +G R
Sbjct: 780 QGQVTVTKNPCFHPGDMRKFTAVDVPELRHMVDCIVFPSRGPR 822
>gi|296804254|ref|XP_002842979.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
gi|238845581|gb|EEQ35243.1| RNA-directed RNA polymerase Rdp1 [Arthroderma otae CBS 113480]
Length = 1473
Score = 308 bits (790), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 184/518 (35%), Positives = 283/518 (54%), Gaps = 67/518 (12%)
Query: 212 EHALDKLYHL---KECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPS 268
+ A D L H+ K ++P + ++ +T R P + Y+ VTPS
Sbjct: 441 DDARDLLEHVSREKAVYHDPMKIFDIEFFSGVTGRKIPKN--------CCYMRSATVTPS 492
Query: 269 RVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIY 328
+YF P ++ SNRVLR++ D FLR+ F DE + R +S+ + ++
Sbjct: 493 TIYFHTPTVDTSNRVLRYYIEHADRFLRVRFADEKYEG--------RINSSYNNCMDELF 544
Query: 329 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV 388
TR+ T+ NGI +GDR +EFLAF +SQ RE A+ FAS LTAA IR WMG+F +I+ V
Sbjct: 545 TRVKRTMTNGITVGDRHYEFLAFGNSQFREHGAYFFASLPTLTAANIRAWMGHFSDIKIV 604
Query: 389 AKYAARLGQSFSSSKETLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 446
AK+AARLGQ FS++K V + EI+ EI + Y+FSDG+G++S A+ +
Sbjct: 605 AKHAARLGQCFSATKAVTGCPVIVQEID-------EIERNGYIFSDGVGRISNFLAQMIR 657
Query: 447 SKCGLK---DNPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWS 502
++ ++ D PPS FQ R GG KG++ P + +++ +R S K+ + L+V+ S
Sbjct: 658 TELNIQTPSDEPPSVFQFRLGGCKGILTVSPEAQHREVHIRKSQYKFAAVHNGLEVIRHS 717
Query: 503 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENT 561
K+ LNRQLI +LS LG+ DEIF KK + + +T+ KA L+ + P + T
Sbjct: 718 KFAGAHLNRQLIMVLSALGVTDEIFLKKLHLVLEDMQDAMTNESKAITLLQKRVDPNQMT 777
Query: 562 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-- 619
+L ++ G++ EPF+ +L+ +RA + L+ K +I I G ++GC+DET TL
Sbjct: 778 FLLAHMVNDGFQASCEPFVKSLLELWRAWDIKYLKEKAKIHIEKGACLLGCIDETATLKG 837
Query: 620 ------------------NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
N ++FVQ+ F + + I++G ++A
Sbjct: 838 YYEKERPASDATIEERLDNLPEIFVQV--------------FDTEEETKYKIIEGPCILA 883
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYI 699
+NP LHPGD+RV++AVNVPALHH+ D +VFPQ G R +
Sbjct: 884 RNPSLHPGDIRVVRAVNVPALHHLKDVIVFPQTGDRDV 921
>gi|392864142|gb|EAS35051.2| RNA-directed RNA polymerase [Coccidioides immitis RS]
Length = 1403
Score = 308 bits (790), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 191/568 (33%), Positives = 299/568 (52%), Gaps = 74/568 (13%)
Query: 165 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 224
D LP+ + +++ + + +G + + F + + +EH + K
Sbjct: 367 DYTPLPFSVRYQLEVCLSHGLLNEYTIGKEFVAALVALGETKARELLEHVASE----KHV 422
Query: 225 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 284
Y+P + + K TSR P Y+ +VTPS VYF P ++++NRV+
Sbjct: 423 YYDPKKIFDILFVKPATSRRIPKY--------CCYMRTARVTPSTVYFGTPSVDITNRVI 474
Query: 285 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 344
RH+ D FLR+ F DE + R + + T ++TR+ T+ NGI +GDR
Sbjct: 475 RHYIEYADRFLRVRFTDEKFEG--------RIQPSHNNTMDEVFTRVKRTMMNGITLGDR 526
Query: 345 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 404
+EFLAF +SQ RE A+ FAS LTAA IR WMG+F +I+ +A++AARLGQ FS+++
Sbjct: 527 HYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRA 586
Query: 405 TLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR------KVASKCGLKDNPP 456
V + EIE +I + Y FSDG+G++S A+ K+ + CG PP
Sbjct: 587 VTGCPVQIREIE-------DIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCG---EPP 636
Query: 457 SAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 515
S FQ R GG KG++ P + + ++ +R S K+ + L+V+ S + LNRQLI
Sbjct: 637 SVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIV 696
Query: 516 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKP 574
+LS+L + DE+F +K R + L+ +T +A L + + P + T +L E++ G++
Sbjct: 697 VLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQS 756
Query: 575 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN-------------- 620
EPF++ +L+ +RA ++ L+ K +I I G + GCLDET TL
Sbjct: 757 SKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGLFHDNIPSKDASY 816
Query: 621 ------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
++FVQIS A + + I++G ++A+NP LHPGD+RV+
Sbjct: 817 EERLACLPEIFVQISRA--------------NNDGKYEIIEGPCIIARNPSLHPGDIRVV 862
Query: 675 KAVNVPALHHMVDCVVFPQKGMRYILTM 702
KAVN PALHH+ D +VFPQ G R I +M
Sbjct: 863 KAVNAPALHHLRDVIVFPQTGDRDIPSM 890
>gi|119192036|ref|XP_001246624.1| hypothetical protein CIMG_00395 [Coccidioides immitis RS]
Length = 1492
Score = 308 bits (789), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 191/568 (33%), Positives = 299/568 (52%), Gaps = 74/568 (13%)
Query: 165 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 224
D LP+ + +++ + + +G + + F + + +EH + K
Sbjct: 456 DYTPLPFSVRYQLEVCLSHGLLNEYTIGKEFVAALVALGETKARELLEHVASE----KHV 511
Query: 225 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 284
Y+P + + K TSR P Y+ +VTPS VYF P ++++NRV+
Sbjct: 512 YYDPKKIFDILFVKPATSRRIPKY--------CCYMRTARVTPSTVYFGTPSVDITNRVI 563
Query: 285 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 344
RH+ D FLR+ F DE + R + + T ++TR+ T+ NGI +GDR
Sbjct: 564 RHYIEYADRFLRVRFTDEKFEG--------RIQPSHNNTMDEVFTRVKRTMMNGITLGDR 615
Query: 345 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 404
+EFLAF +SQ RE A+ FAS LTAA IR WMG+F +I+ +A++AARLGQ FS+++
Sbjct: 616 HYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRA 675
Query: 405 TLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR------KVASKCGLKDNPP 456
V + EIE +I + Y FSDG+G++S A+ K+ + CG PP
Sbjct: 676 VTGCPVQIREIE-------DIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCG---EPP 725
Query: 457 SAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 515
S FQ R GG KG++ P + + ++ +R S K+ + L+V+ S + LNRQLI
Sbjct: 726 SVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIV 785
Query: 516 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKP 574
+LS+L + DE+F +K R + L+ +T +A L + + P + T +L E++ G++
Sbjct: 786 VLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQS 845
Query: 575 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN-------------- 620
EPF++ +L+ +RA ++ L+ K +I I G + GCLDET TL
Sbjct: 846 SKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGLFHDNIPSKDASY 905
Query: 621 ------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
++FVQIS A + + I++G ++A+NP LHPGD+RV+
Sbjct: 906 EERLACLPEIFVQISRA--------------NNDGKYEIIEGPCIIARNPSLHPGDIRVV 951
Query: 675 KAVNVPALHHMVDCVVFPQKGMRYILTM 702
KAVN PALHH+ D +VFPQ G R I +M
Sbjct: 952 KAVNAPALHHLRDVIVFPQTGDRDIPSM 979
>gi|350631624|gb|EHA19995.1| hypothetical protein ASPNIDRAFT_179412 [Aspergillus niger ATCC
1015]
Length = 1201
Score = 308 bits (788), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 174/459 (37%), Positives = 270/459 (58%), Gaps = 29/459 (6%)
Query: 259 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 318
++ +TPS VY+ P +++SNR++R + D FLR+ F DE L R ++
Sbjct: 455 HMRSATITPSTVYYNLPSVDISNRIIRRYMEHADRFLRVRFTDEKL--------YGRINA 506
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
+D + I+TRI L NGI+IGDR++EFLAF +SQ RE A+ FA LTAA IR W
Sbjct: 507 RSDNSNDEIFTRIKRALANGIVIGDRRYEFLAFGNSQFREHGAYFFAPLPDLTAANIRAW 566
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
MG+F +IRNVAKYAARLGQ FS+++ + +I IPDV+ + Y FSDG+GK+S
Sbjct: 567 MGHFSDIRNVAKYAARLGQCFSTTRAVAGCPV-QIRNIPDVE----RNGYTFSDGVGKIS 621
Query: 439 AEFARKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELT 494
A+ ++ +K PPSAFQ R GG KG++A + +++ +R+S K+ +
Sbjct: 622 RFLAQMAMTELKIKTPTGEPPSAFQFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHN 681
Query: 495 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-E 553
L+++ WS++ LNRQLI ++STLG+ DE+F K + +R LD + +A E L +
Sbjct: 682 GLEIIRWSQFSMATLNRQLILVMSTLGVPDEVFHAKLKSMLRALDEAMESDSRAIEVLKK 741
Query: 554 LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 613
+ P + T + +++ G++ EPFL+ +L +R + L+ K +I I G +++G +
Sbjct: 742 YVDPNQTTLTVSQMVSDGFRRSKEPFLTSILALWRTWHIKYLKEKAKIVIDKGTNLLGVM 801
Query: 614 DETRTLNYGQVFVQI---SGAGYRQLHGESSLF-------SSSRSRQRFIVQGLVVVAKN 663
DET L G + +I + ++L +F +S +++GL ++A+N
Sbjct: 802 DETGILK-GYFYDKIPKKDASLEQKLAALPEIFLQIPRSEASEDGATYEVIEGLCILARN 860
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
P LHPGD+RV++AVNVP LH + D VV PQ G R I +M
Sbjct: 861 PSLHPGDIRVVRAVNVPELHSLRDVVVLPQTGDRDIASM 899
>gi|303313157|ref|XP_003066590.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240106252|gb|EER24445.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1445
Score = 308 bits (788), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 191/568 (33%), Positives = 299/568 (52%), Gaps = 74/568 (13%)
Query: 165 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 224
D LP+ + +++ + + +G + + F + + +EH + K
Sbjct: 409 DYTPLPFTVRYQLEVCLSHGFLNEYTIGKEFVTALVALGETKARELLEHVASE----KHV 464
Query: 225 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 284
Y+P + + K TSR P Y+ +VTPS VYF P ++++NRV+
Sbjct: 465 YYDPKKIFDILFVKPATSRRIPKY--------CCYMRTARVTPSTVYFGTPSVDITNRVI 516
Query: 285 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 344
RH+ D FLR+ F DE + R + + T ++TR+ T+ NGI +GDR
Sbjct: 517 RHYIEYADRFLRVRFTDEKFEG--------RIQPSHNNTMDEVFTRVKRTMMNGITLGDR 568
Query: 345 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 404
+EFLAF +SQ RE A+ FAS LTAA IR WMG+F +I+ +A++AARLGQ FS+++
Sbjct: 569 HYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRA 628
Query: 405 TLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR------KVASKCGLKDNPP 456
V + EIE +I + Y FSDG+G++S A+ K+ + CG PP
Sbjct: 629 VTGCPVQIREIE-------DIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCG---EPP 678
Query: 457 SAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 515
S FQ R GG KG++ P + + ++ +R S K+ + L+V+ S + LNRQLI
Sbjct: 679 SVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIV 738
Query: 516 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKP 574
+LS+L + DE+F +K R + L+ +T +A L + + P + T +L E++ G++
Sbjct: 739 VLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLYKYIDPNQMTLVLAEMIQDGFQS 798
Query: 575 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN-------------- 620
EPF++ +L+ +RA ++ L+ K +I I G + GCLDET TL
Sbjct: 799 SKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGFFHDNIPSKDASY 858
Query: 621 ------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
++FVQIS A + + I++G ++A+NP LHPGD+RV+
Sbjct: 859 EERLACLPEIFVQISRA--------------NNDGKYEIIEGPCIIARNPSLHPGDIRVV 904
Query: 675 KAVNVPALHHMVDCVVFPQKGMRYILTM 702
KAVN PALHH+ D +VFPQ G R I +M
Sbjct: 905 KAVNAPALHHLRDVIVFPQTGDRDIPSM 932
>gi|291228412|ref|XP_002734181.1| PREDICTED: RNA-dependent RNA polymerase Family family member
(rrf-3)-like [Saccoglossus kowalevskii]
Length = 1491
Score = 307 bits (787), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 183/448 (40%), Positives = 267/448 (59%), Gaps = 37/448 (8%)
Query: 259 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 318
Y+ RV VTPSR+ F PE+ NRVLR + + R+ F DE+ + LS S
Sbjct: 383 YLRRVMVTPSRLIFLQPELMFENRVLRRYSEEY--CARLVFKDENYQR-----LSNPVSI 435
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-SRYGLTAAEIRE 377
++D+ +I+STL+NG + DR +EFLA S+SQLRE W +A +G TAA IRE
Sbjct: 436 SSDVA-----NKIISTLQNGFQVADRNYEFLACSNSQLREHGCWFYAKDNHGNTAANIRE 490
Query: 378 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVK--IEIGKTKYVFSDG 433
WMG+F +IR VA Y +R+GQ FS+S+ET++V ++++ + I D+ ++I + Y FSDG
Sbjct: 491 WMGDFSKIRCVATYMSRMGQCFSTSEETVNVTVEDVTVSNIEDITGGMDINQKPYCFSDG 550
Query: 434 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE 492
IGK+S + K+ K K SA+QIRY G KG+VA DP+ + +++ +R SM K+ SE
Sbjct: 551 IGKISKQLIEKICEKTE-KHVVASAYQIRYAGSKGMVALDPSLTGEQIMIRKSMLKFPSE 609
Query: 493 LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
++++ +K LNRQ+I++LS LGI D++F K Q R L+ + LK A
Sbjct: 610 HDNIEIMNLTKPARLHLNRQVITILSGLGIEDKVFLKLQH---RMLNNLANMFLKEDVAA 666
Query: 553 ELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSM 609
+S I K ++ CG EPF +LQ S L ELR + RI +P R+M
Sbjct: 667 AWLSRRSQIGINFKHMMTCGISLTTEPFFKSLLQAVYKSLLGELRRRARIILPPQFARNM 726
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 669
MG +DET L YGQVF+Q S ++L +++ + G VVV K PC HPG
Sbjct: 727 MGVIDETGALQYGQVFIQYS----KKL--------DKPQKEKIVHSGPVVVTKFPCYHPG 774
Query: 670 DVRVLKAVNVPALHHMVDCVVFPQKGMR 697
DVR +AV++PAL+H++DC+VFP++G R
Sbjct: 775 DVRKFQAVDIPALYHLIDCIVFPRQGPR 802
>gi|296420862|ref|XP_002839987.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636195|emb|CAZ84178.1| unnamed protein product [Tuber melanosporum]
Length = 1542
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 198/550 (36%), Positives = 300/550 (54%), Gaps = 41/550 (7%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLYHLKECCYE 227
L Y + +++ + + + C++ + F + +I +EH A ++ H Y+
Sbjct: 575 LSYPVRYQLEVCISHNCLSEYNITCEFIDRLAALPKEAAIPLLEHIAERRIRH-----YD 629
Query: 228 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 287
P T Q T K L D + + VTPS VYF P + ++NRV+R +
Sbjct: 630 PMDIFTIQGVTKGTINLK-------LPDHCQLLRKANVTPSTVYFTTPTVEITNRVVRQY 682
Query: 288 RRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 346
ID FLR+ F+DE +I+STD T ++TR+ + L +GI IGDRKF
Sbjct: 683 SEHIDRFLRVQFVDEKSQGRINSTDKK---------TMHEVFTRVKAALDHGITIGDRKF 733
Query: 347 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 406
EFLAF +SQ+RE A+ FAS L+AA+IR WMG+F EIR VAK+AARLGQ FS+++
Sbjct: 734 EFLAFGNSQIREHGAYFFASDDHLSAADIRAWMGSFSEIRIVAKHAARLGQCFSTTRAIN 793
Query: 407 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL----KDNPPSAFQIR 462
V +D + D+ + Y FSDG+GK+S AR + ++ L K+ PS FQ R
Sbjct: 794 GVRVD-VRTTEDI---VNAEGYNFSDGVGKISEFLARLITTELRLRLVDKEPVPSCFQFR 849
Query: 463 YGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
GG KGV+A P ++ +++ +R S K+E+ L+V+ WSK+ LNRQLI +L++LG
Sbjct: 850 LGGRKGVLAVSPDANHREVYIRPSQLKFEARHNILEVIRWSKFATAALNRQLIIVLTSLG 909
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFL 580
D FE K + ++ + + DP A L + P E+T + ++ G+ EPF+
Sbjct: 910 APDHYFEDKLQFMLKSYEVAMVDPGVAVRLLCRNVDPNESTLAIAAMIRAGFMDRREPFV 969
Query: 581 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 640
+L+ +RA + L+ K +I I G ++G +DET TL+ G + Q G+ + E+
Sbjct: 970 MSLLKLWRAWTIKYLKEKAKIMIEEGAFVLGVVDETGTLD-GYYYSQDEGSTEDADNPET 1028
Query: 641 SL-------FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 693
SL R + I++G V+A+NP LHPGDVR + AVN LHH+ + VVF Q
Sbjct: 1029 SLPQIFLQVTDPDRPGESRIIEGPCVIARNPSLHPGDVRKVMAVNAKELHHLRNVVVFSQ 1088
Query: 694 KGMRYILTML 703
KG R + ML
Sbjct: 1089 KGDRDLPNML 1098
>gi|320036523|gb|EFW18462.1| RNA-directed RNA polymerase Rdp1 [Coccidioides posadasii str.
Silveira]
Length = 1444
Score = 305 bits (782), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 190/568 (33%), Positives = 298/568 (52%), Gaps = 74/568 (13%)
Query: 165 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 224
D LP+ + +++ + + +G + + F + + +EH + K
Sbjct: 408 DYTPLPFSVRYQLEVCLSHGFLNEYTIGKEFVTALVALGETKARELLEHVASE----KHV 463
Query: 225 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 284
Y+P + + K SR P Y+ +VTPS VYF P ++++NRV+
Sbjct: 464 YYDPKKIFDILFVKPAMSRRIPKY--------CCYMRTARVTPSTVYFGTPSVDITNRVI 515
Query: 285 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 344
RH+ D FLR+ F DE + R + + T ++TR+ T+ NGI +GDR
Sbjct: 516 RHYIEYADRFLRVRFTDEKFEG--------RIQPSHNNTMDEVFTRVKRTMMNGITLGDR 567
Query: 345 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 404
+EFLAF +SQ RE A+ FAS LTAA IR WMG+F +I+ +A++AARLGQ FS+++
Sbjct: 568 HYEFLAFGNSQFREHGAYFFASLPHLTAANIRAWMGHFSDIKEIARHAARLGQCFSTTRA 627
Query: 405 TLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR------KVASKCGLKDNPP 456
V + EIE +I + Y FSDG+G++S A+ K+ + CG PP
Sbjct: 628 VTGCPVQIREIE-------DIQRNGYTFSDGVGRISRFLAQMVMTEFKIKTPCG---EPP 677
Query: 457 SAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 515
S FQ R GG KG++ P + + ++ +R S K+ + L+V+ S + LNRQLI
Sbjct: 678 SVFQFRLGGCKGILTVSPEAQRQQVHIRKSQYKFPAIHNGLEVIRHSHFCMASLNRQLIV 737
Query: 516 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKP 574
+LS+L + DE+F +K R + L+ +T +A L + + P + T +L E++ G++
Sbjct: 738 VLSSLEVPDEVFLEKLRMMLGNLELAMTSETQAIHLLHKYIDPNQMTLVLAEMIQDGFQS 797
Query: 575 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN-------------- 620
EPF++ +L+ +RA ++ L+ K +I I G + GCLDET TL
Sbjct: 798 SKEPFVTSLLELWRAWQIKYLKEKAKIIIEEGACLFGCLDETGTLKGFFHDNIPSKDASY 857
Query: 621 ------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
++FVQIS A + + I++G ++A+NP LHPGD+RV+
Sbjct: 858 EERLACLPEIFVQISRA--------------NNDGKYEIIEGPCIIARNPSLHPGDIRVV 903
Query: 675 KAVNVPALHHMVDCVVFPQKGMRYILTM 702
KAVN PALHH+ D +VFPQ G R I +M
Sbjct: 904 KAVNAPALHHLRDVIVFPQTGDRDIPSM 931
>gi|389646751|ref|XP_003721007.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
gi|351638399|gb|EHA46264.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae 70-15]
Length = 1407
Score = 305 bits (781), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 187/545 (34%), Positives = 290/545 (53%), Gaps = 30/545 (5%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ L +E+ +++ + + +A P + F + R + +E+ +D+ L Y
Sbjct: 371 VQLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKL----Y 426
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
P + D+ S P L +V VTPS +Y P + +NRVLRH
Sbjct: 427 NPMQLFKDE----GASTYWPDITPEELPQYCTMTRKVTVTPSTMYLSSPMVETTNRVLRH 482
Query: 287 FRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+ D FLR+ F DE ++H+ P A D I++R+ L+NGI IGDR
Sbjct: 483 YNEHKDRFLRVQFTDELPTGRLHA----PNDLGADD----EIFSRVYRVLKNGIHIGDRH 534
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
++FLAF SSQ+RE+S + F +T IR WMG F IRNV KYAARLGQ FS+++
Sbjct: 535 YKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSI 594
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
V M I+ IPD++ K Y F+DG+GK+S+ +A ++ L D PSAFQ R GG
Sbjct: 595 DRVAMPWIKTIPDIE----KNGYCFTDGVGKISSLWAVVISENLKL-DYIPSAFQFRMGG 649
Query: 466 YKGV-VAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 524
KGV V + +++ +R S K+E++ ++L+V+ S + LNRQ IS+L++LG+ +
Sbjct: 650 CKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKN 709
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMM 583
E+FE E + + + + D A L + + + TN L L+ G+ EPF+ M
Sbjct: 710 EVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTM 769
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL- 642
L+ +R + L+ K R+ + G ++GC+DET+TL+ + S +L+G L
Sbjct: 770 LRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLP 829
Query: 643 -----FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
SR ++ GL +V +NP LHPGD+RV++A++VP L H+ D VVF Q G R
Sbjct: 830 EIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDR 889
Query: 698 YILTM 702
I M
Sbjct: 890 DIPGM 894
>gi|440466934|gb|ELQ36175.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae Y34]
gi|440478755|gb|ELQ59556.1| RNA-dependent RNA polymerase 1 [Magnaporthe oryzae P131]
Length = 1977
Score = 305 bits (780), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 187/545 (34%), Positives = 290/545 (53%), Gaps = 30/545 (5%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ L +E+ +++ + + +A P + F + R + +E+ +D+ L Y
Sbjct: 941 VQLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKL----Y 996
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
P + D+ S P L +V VTPS +Y P + +NRVLRH
Sbjct: 997 NPMQLFKDE----GASTYWPDITPEELPQYCTMTRKVTVTPSTMYLSSPMVETTNRVLRH 1052
Query: 287 FRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+ D FLR+ F DE ++H+ P A D I++R+ L+NGI IGDR
Sbjct: 1053 YNEHKDRFLRVQFTDELPTGRLHA----PNDLGADD----EIFSRVYRVLKNGIHIGDRH 1104
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
++FLAF SSQ+RE+S + F +T IR WMG F IRNV KYAARLGQ FS+++
Sbjct: 1105 YKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSI 1164
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
V M I+ IPD++ K Y F+DG+GK+S+ +A ++ L D PSAFQ R GG
Sbjct: 1165 DRVAMPWIKTIPDIE----KNGYCFTDGVGKISSLWAVVISENLKL-DYIPSAFQFRMGG 1219
Query: 466 YKGV-VAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 524
KGV V + +++ +R S K+E++ ++L+V+ S + LNRQ IS+L++LG+ +
Sbjct: 1220 CKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKN 1279
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMM 583
E+FE E + + + + D A L + + + TN L L+ G+ EPF+ M
Sbjct: 1280 EVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTM 1339
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL- 642
L+ +R + L+ K R+ + G ++GC+DET+TL+ + S +L+G L
Sbjct: 1340 LRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLP 1399
Query: 643 -----FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
SR ++ GL +V +NP LHPGD+RV++A++VP L H+ D VVF Q G R
Sbjct: 1400 EIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDR 1459
Query: 698 YILTM 702
I M
Sbjct: 1460 DIPGM 1464
>gi|86196450|gb|EAQ71088.1| hypothetical protein MGCH7_ch7g495 [Magnaporthe oryzae 70-15]
Length = 1952
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 187/545 (34%), Positives = 290/545 (53%), Gaps = 30/545 (5%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ L +E+ +++ + + +A P + F + R + +E+ +D+ L Y
Sbjct: 916 VQLTWEVRYQLEACISHRMLAEPNITLEFLEKLSEMRPTKARIMLEYVVDRNVKL----Y 971
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
P + D+ S P L +V VTPS +Y P + +NRVLRH
Sbjct: 972 NPMQLFKDE----GASTYWPDITPEELPQYCTMTRKVTVTPSTMYLSSPMVETTNRVLRH 1027
Query: 287 FRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+ D FLR+ F DE ++H+ P A D I++R+ L+NGI IGDR
Sbjct: 1028 YNEHKDRFLRVQFTDELPTGRLHA----PNDLGADD----EIFSRVYRVLKNGIHIGDRH 1079
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
++FLAF SSQ+RE+S + F +T IR WMG F IRNV KYAARLGQ FS+++
Sbjct: 1080 YKFLAFGSSQMRENSTYFFCDAGDVTCDSIRAWMGRFSHIRNVGKYAARLGQCFSTTRSI 1139
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
V M I+ IPD++ K Y F+DG+GK+S+ +A ++ L D PSAFQ R GG
Sbjct: 1140 DRVAMPWIKTIPDIE----KNGYCFTDGVGKISSLWAVVISENLKL-DYIPSAFQFRMGG 1194
Query: 466 YKGV-VAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 524
KGV V + +++ +R S K+E++ ++L+V+ S + LNRQ IS+L++LG+ +
Sbjct: 1195 CKGVLVVWEDVKGQEIHIRPSQLKFETDHSRLEVIRCSHFSVASLNRQTISVLTSLGVKN 1254
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMM 583
E+FE E + + + + D A L + + + TN L L+ G+ EPF+ M
Sbjct: 1255 EVFESMLAEQLAKYNRAMEDATAAMTLLTQYVDENQMTNTLARLVKAGFMESHEPFVCTM 1314
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL- 642
L+ +R + L+ K R+ + G ++GC+DET+TL+ + S +L+G L
Sbjct: 1315 LRLWRTWSVKTLKEKARLVVEKGAFVLGCVDETKTLHGHFTHIPASPNQRPRLNGNMKLP 1374
Query: 643 -----FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
SR ++ GL +V +NP LHPGD+RV++A++VP L H+ D VVF Q G R
Sbjct: 1375 EIFLQVPDGPSRDYKVITGLCLVGRNPSLHPGDIRVVQAIDVPQLRHIRDVVVFAQTGDR 1434
Query: 698 YILTM 702
I M
Sbjct: 1435 DIPGM 1439
>gi|402075074|gb|EJT70545.1| RNA-dependent RNA polymerase 1 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1551
Score = 304 bits (778), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 201/631 (31%), Positives = 323/631 (51%), Gaps = 73/631 (11%)
Query: 110 IGQSTGLCMELP------YRLELPDF------KENFAYYKESEDRFV----LETGSAYSR 153
+G+ T C+ELP L DF + +F + +D V L+ + +
Sbjct: 270 LGRWTTYCIELPKGEWSLIEGYLGDFNIKTHPETDFQFSAPQDDPVVMWKHLDRPAELDQ 329
Query: 154 SLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH 213
++ I+ + I LP+E+ +++ + + + + F + + + +E+
Sbjct: 330 GGHMLQILSDSERINLPWEVRYQLEVCISRRHLLESSITLEFLQQLSKMTPREARMVLEY 389
Query: 214 ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFC 273
+D+ Y+P L ++ +R P L + + + + VTPS VY
Sbjct: 390 PIDRRVKF----YDPMLLL----QEAREARYAPDVHPELLPEYCILMRKAIVTPSTVYLN 441
Query: 274 GPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILS 333
P + +NRVLRH+ D F+RI F DE +H ++ ++ +YTR+
Sbjct: 442 SPTVETTNRVLRHYYDFRDRFMRIQFTDE----LHRGRIN---ATQDQRVNDELYTRVYR 494
Query: 334 TLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAA 393
LRNGI IGDR ++FLAF +SQ+RESSA+ FA+ +T IR WMG+FR IRNV KYAA
Sbjct: 495 VLRNGIFIGDRHYQFLAFGNSQMRESSAYFFAAVGDVTCDSIRAWMGDFRHIRNVGKYAA 554
Query: 394 RLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD 453
RLGQ FS+++ S + I+ IPD++ + Y FSDG+GK+S ++ +++ + L +
Sbjct: 555 RLGQCFSTTRNIDSTSVQWIKSIPDIE----ENGYCFSDGVGKISQFWSTRISQRLSL-N 609
Query: 454 NPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 512
PSAFQ R GG KG++ P + +R S K+++E ++L+V+ S+Y LNRQ
Sbjct: 610 TYPSAFQFRMGGRKGILTVWPDVKGMDIHVRPSQEKFQTEHSRLEVIRCSQYAVATLNRQ 669
Query: 513 LISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNILKELLICG 571
I +LS LGI D +FE + + D + DP+ A L L + + T L +L++ G
Sbjct: 670 TIPILSALGIEDHVFEDMLADQLASYDKAMEDPVAAMSLLNLYVDENQMTKALSQLIMAG 729
Query: 572 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT------------- 618
EPF+ ML+ +R + L+ K RI + G ++GC+DET
Sbjct: 730 LMKSQEPFVWTMLRLWRTWSIKSLKEKARIVVEKGAFVLGCVDETGKLRGHYARVKTHPD 789
Query: 619 ----LNYG---QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 671
LN+ Q+F+Q+ G + L+ +V G VV +NP LHPGD+
Sbjct: 790 QRPRLNHSELPQIFLQVPD-------GPNGLYK--------VVTGTCVVGRNPSLHPGDL 834
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
R+++AV+VP L H+ D VVFP+ G R I +M
Sbjct: 835 RIVEAVDVPELRHLRDVVVFPKSGDRDIPSM 865
>gi|295667341|ref|XP_002794220.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226286326|gb|EEH41892.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1273
Score = 302 bits (773), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 179/458 (39%), Positives = 271/458 (59%), Gaps = 22/458 (4%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSP 314
G Y+ +VTPS +Y+ P I+ NRVLR +R D FL + F DE ++ KI
Sbjct: 460 GCCYMRSAEVTPSTIYYKPPSIDTGNRVLRRYREYADRFLHVRFTDEKNMGKIFPY---- 515
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 374
S+A + +YTR+ T++NGI IGDR +EFLAFS++QLRE +A+ FAS LTAA
Sbjct: 516 --SNANIVCMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAAN 573
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 434
IR +G F +IRNVAK+AARLGQ FSS++ + +EI +I + Y FSDG+
Sbjct: 574 IRAQLGKFNQIRNVAKHAARLGQCFSSTRALNGCPVQIVEI-----DDIERNGYTFSDGV 628
Query: 435 GKVSAEFARKVASKCG---LKDNPPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYE 490
G +S A+ + S+ L PPS FQ R GG KG++ + ++ + +R S K+
Sbjct: 629 GLISTFLAQMIQSEFAIETLSGEPPSVFQFRLGGCKGILTVSSKAHRREVHIRKSQYKFA 688
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
+ L+++ S + LNRQLI +LS+LGI DEIF KK + + L+ +T +A
Sbjct: 689 APHNGLEIIRHSSFCFASLNRQLIIVLSSLGIPDEIFVKKLQVMLENLELAMTSQEQAVN 748
Query: 551 ALEL-MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
L+ + P + T +L ++++ G++ +PF++ +L+ +R ++ L+ K +I I G +
Sbjct: 749 LLQTYVDPNQMTLVLADMVLDGFQQSQDPFVTSLLELWRVWQIKYLKAKAKIAIDKGAFL 808
Query: 610 MGCLDETRTL-NYGQVFVQISGAGYRQ-LHGESSLFS--SSRSRQRF-IVQGLVVVAKNP 664
+GCLDET +L Y + GA Y Q L +F S S + +++GL ++A+NP
Sbjct: 809 LGCLDETGSLKGYFRSKRPGGGATYEQKLDCLPEIFVQISRHSEDTYEVIEGLCILARNP 868
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
LHPGD+RV+KAV++P LHH+ D VV PQ G R I +M
Sbjct: 869 SLHPGDIRVVKAVDIPDLHHLKDVVVLPQTGDRDIASM 906
>gi|212544602|ref|XP_002152455.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces
marneffei ATCC 18224]
gi|210065424|gb|EEA19518.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces
marneffei ATCC 18224]
Length = 1359
Score = 301 bits (772), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 185/551 (33%), Positives = 303/551 (54%), Gaps = 44/551 (7%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDS-NFYRLVDPYRAPVSISCIEHALDKLYHLKECC 225
I LP+ I +++ + + +G ++ F + + +++ +EH K+
Sbjct: 433 IHLPFAIRYQLEVCISHGYISEYTASKPEFVQRLKDMEERKALTLLEHVATD----KKIY 488
Query: 226 YEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 285
++ + + K +T R+ PS + + VTPS +Y+ P + ++NRVLR
Sbjct: 489 WDAMKIFDILFPKGVTRRNIPSYCCM--------IRTATVTPSTIYWNTPSMEITNRVLR 540
Query: 286 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+ D FLR+ F DE + R +S T I+ RI T+ NGI++GDRK
Sbjct: 541 RYSEHADRFLRVRFKDEKFEG--------RINSTHHDTMDEIFARIKRTMSNGIILGDRK 592
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
+EFLAF +SQ RE A+ FAS +TAA IR WMG F EIRN+AKYAARLGQ FS+++
Sbjct: 593 YEFLAFGNSQFREHGAYFFASEAHVTAANIRAWMGEFSEIRNIAKYAARLGQCFSTTR-A 651
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIR 462
++ E++ IPDV+ + Y FSDG+G++S A+ + +K PPSA+Q R
Sbjct: 652 INTCTVELKRIPDVE----RGGYTFSDGVGRISRFLAQMTQQELKIKTPDKEPPSAYQFR 707
Query: 463 YGGYKGV-VAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
GG KG+ V +D +++ +R S K+ + L+++ WS++ LNRQLI++LS+LG
Sbjct: 708 LGGCKGMLVLSDVPRGREIQIRPSQEKFPANHQGLEIIRWSQFSSATLNRQLIAVLSSLG 767
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFL 580
+ DE+F +K R V L+ D A L+ + P E T +L +++ G+ +PF+
Sbjct: 768 VSDEVFHEKLRRMVSNLEEATRDDRAAMRLLQKYIDPNEMTLVLSKMVSDGFLQSRDPFV 827
Query: 581 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 640
+ ++ ++A + L+ K +I I +G ++G LDET TL G + ++ L ES
Sbjct: 828 TSIITLWKAWSIKYLKEKAKITIEDGACLLGVLDETATLQ-GFSYEKVKKP---HLSRES 883
Query: 641 SLFS---------SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 691
L + + ++ +++G+ ++A+NP LHPGD+RV++AV+ P L H+ D VV
Sbjct: 884 KLDALPEIFLQVYRADEKKYCVIKGVCILARNPSLHPGDIRVVRAVDRPELAHLKDVVVL 943
Query: 692 PQKGMRYILTM 702
PQ G R I +M
Sbjct: 944 PQLGDRDIASM 954
>gi|325088329|gb|EGC41639.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1522
Score = 300 bits (769), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 213/711 (29%), Positives = 353/711 (49%), Gaps = 112/711 (15%)
Query: 61 LIQLLGAPRIFQKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDF---------TPSNFIG 111
L+ L +P I + I + D+ + P N + D W+R TD TP N
Sbjct: 385 LVIPLDSPAICHQQITTLDMKHFPPNENIWSS--QDTWIRQTDIVHYPEKTIRTPVNLRK 442
Query: 112 QSTGLCME--LPYRL------------------ELPDFK------ENFAYYKESED---- 141
Q++ + +RL L DF ++F K +E
Sbjct: 443 QNSHINFGRWTTFRLVLHENTVSDDKKFQIFHDALRDFNINIQECDDFEVIKGAEPIPTV 502
Query: 142 -RFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVD 200
+++ + SR L + + + I LP+ + +++ + + GC+ +LD F +
Sbjct: 503 WKWIDAPSTHKSRPLSSLEDLEGDEYIPLPFTVRYQLEVCISQGCLNEYILDETFVLQLA 562
Query: 201 PYRAPVSISCIEH-ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVY 259
+ +EH A++K + Y P + +T P + Y
Sbjct: 563 QLGEKKAKELLEHVAMNKAVY-----YSPMEIFDIPFPDGVTHGRIP--------EHCCY 609
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPRGSS 318
+ +TPS +++ P ++ SNRV R+ R D FLR+ F DE + +I+S S+
Sbjct: 610 MRSADITPSTIHYDIPSVDTSNRVFRYHREHADRFLRVRFCDEKYMGRIYSN------SN 663
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
++ + +Y R+ L++GI+IGDR +EFLAF +SQ RE A+ FAS LTAA IR
Sbjct: 664 GNNLCMSEVYARVTRILQHGIIIGDRHYEFLAFGNSQFREHGAFFFASLPHLTAANIRAQ 723
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
MG+ I+ VAKYAARLGQ FS+++ S V + E++ +I + YVFSDG+G+
Sbjct: 724 MGDLNNIKVVAKYAARLGQCFSTTRAVTSCPVQLKEVD-------DIERNGYVFSDGVGR 776
Query: 437 VSAEFARKVASKCGLK---DNPPSAFQIRYGGYKGVVA-ADPTSSKKLSLRDSMRKYESE 492
+S + + S G+ PPSAFQ R GG KG++A + +++ +R S K+ +
Sbjct: 777 LSHFLTQMIRSDLGINTPSGQPPSAFQFRLGGCKGILAVSSDAHGQEVHIRKSQYKFAAA 836
Query: 493 LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
L+++ S + LNRQLI +LS LG+ D++F K R + +L+ +T+ +A L
Sbjct: 837 HHGLEIIRHSHFSLATLNRQLILVLSCLGVPDKVFIAKLRMMMDKLEQAMTNEEQAVHLL 896
Query: 553 EL-MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 611
+ + P + T IL +++ G++ EPF+S +L+ +R ++ L+ K +I + G ++G
Sbjct: 897 QTHVDPNQMTLILADMVRDGFQGSKEPFVSSLLELWRTWQIKYLKEKAKIAVDEGAFLLG 956
Query: 612 CLDETRTLN--------------------YGQVFVQISGAGYRQLHGESSLFSSSRSRQR 651
C+DET+TL ++FVQ+ +R G +
Sbjct: 957 CIDETKTLKGYFRSSRPGQDATYEERVACLPEIFVQV----WRHSEG-----------KY 1001
Query: 652 FIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
I++G+ ++A+NP LHPGD+RV+KAVN P+LHH+ D VV PQ G R I +M
Sbjct: 1002 VIIEGVCILARNPSLHPGDIRVVKAVNAPSLHHLRDVVVLPQTGDRDISSM 1052
>gi|261204627|ref|XP_002629527.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239587312|gb|EEQ69955.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1633
Score = 299 bits (766), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 190/564 (33%), Positives = 303/564 (53%), Gaps = 66/564 (11%)
Query: 161 VGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLY 219
+G + I LP+ + +++ + + + + ++ F R + + +EH A++K
Sbjct: 557 LGEDEYIPLPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTI 616
Query: 220 HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINV 279
+ Y+P + K T+ P Y+ VTPS + + P ++
Sbjct: 617 Y-----YDPMGIFNIPFPKGATNGRIPGH--------CCYIRSADVTPSTICYDIPSVDT 663
Query: 280 SNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 338
SNRV R+ R D FLR+ F DE + KI+ + S ++Y R+L TL++G
Sbjct: 664 SNRVFRYHREHADRFLRVRFCDEKYIGKIYPNN------SGNSQCMEKVYARVLRTLQHG 717
Query: 339 ILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQS 398
I IGDR++EFLAF +SQLRE A+ FAS LTAA IR MG+ IR VAKYAARLGQ
Sbjct: 718 ITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQC 777
Query: 399 FSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNP 455
FS+++ S + +I+ I D++ + YVFSDG+G++S + + S G+K P
Sbjct: 778 FSTTRAVTSCPV-QIKKIDDIE----RNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEP 832
Query: 456 PSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 514
PS FQ R GG KG++A P + +++ +R S K+ + L+++ +S + LNRQLI
Sbjct: 833 PSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRYSHFSYATLNRQLI 892
Query: 515 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYK 573
+LS LG DE+F K + L+ +TD KA L+ + P + T +L +++ G++
Sbjct: 893 LILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQ 952
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN------------- 620
EPF+S +L+ +R ++ L+ K +I I G ++GC+DET+TL
Sbjct: 953 GSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKGYFRSARPKANST 1012
Query: 621 -------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 673
++FVQ+ +R G+ + +++GL ++A+NP LHPGD+RV
Sbjct: 1013 YQERVDCLPEIFVQV----WRHSEGKYA-----------VIEGLCILARNPSLHPGDIRV 1057
Query: 674 LKAVNVPALHHMVDCVVFPQKGMR 697
+KAV+ PALHH+ D VV PQ G R
Sbjct: 1058 VKAVDAPALHHLRDVVVLPQTGDR 1081
>gi|260789117|ref|XP_002589594.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
gi|229274774|gb|EEN45605.1| hypothetical protein BRAFLDRAFT_81564 [Branchiostoma floridae]
Length = 1867
Score = 299 bits (765), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 187/455 (41%), Positives = 260/455 (57%), Gaps = 41/455 (9%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
L D VY +V VTP+++ F PE V NRV+R + +DNF+R++F DED K+
Sbjct: 379 LPDHYVYARKVVVTPTQMLFLKPEPIVENRVVREY--GVDNFIRVAFRDEDFSKL----- 431
Query: 313 SPRGSSATDITRTRIYT-RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--RYG 369
+ T+ R T R+ L GI IG+R F++L S+SQ+RE WM+A+ +
Sbjct: 432 -----AVTNPNSIRCVTSRVKDVLEKGIRIGERNFKYLGSSNSQMREHGCWMYAAADKTT 486
Query: 370 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE--IEIIPDVKIEIGKTK 427
+ ++IR WMG+ R VA Y +RLGQ FSSS +SV +++ +E+I DV+ G
Sbjct: 487 TSTSDIRGWMGDLSHERCVATYVSRLGQFFSSSWNAVSVSVEDRSVELIADVETSSGT-- 544
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADPT--SSKKLSLRD 484
+ FSDGIGK+S A+KVA+ G+ +P PSAFQIRY G KGV+A DPT ++ ++ +R
Sbjct: 545 HTFSDGIGKISVPLAKKVAAALGV--SPVPSAFQIRYAGCKGVLAQDPTLGNTDRIQIRG 602
Query: 485 SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
SM+K+ESE L+V + + LNRQ I+LLS L + D F K Q + QL +L
Sbjct: 603 SMKKFESEHKTLEVTSVTTPGVLSLNRQAITLLSGLNVPDMEFLKLQERVLNQLAEMLIL 662
Query: 545 PLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
A +AL G + L + G EPF ML +++ EL +TRI IP
Sbjct: 663 DEAAVKALSGARVGMDIRALHD---SGISLTTEPFFRSMLLAVYRNRMGELLRRTRIEIP 719
Query: 605 --NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
GR MMG +DET L YGQVF+Q S R++ + + + QG V V K
Sbjct: 720 AGEGRIMMGTMDETGKLQYGQVFIQYS----REVDKPQA--------DKVVHQGQVTVTK 767
Query: 663 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
NPC HPGD+R AV+VP L HMVDC+VFP +G R
Sbjct: 768 NPCFHPGDMRKFTAVDVPELRHMVDCIVFPSRGPR 802
>gi|384495849|gb|EIE86340.1| hypothetical protein RO3G_11051 [Rhizopus delemar RA 99-880]
Length = 1099
Score = 298 bits (763), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 189/539 (35%), Positives = 289/539 (53%), Gaps = 39/539 (7%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
+ L ++ L+ + + + LD FY+ + + S + L+ + K +
Sbjct: 578 LGLDFDTLYSLESAISYNFLNVYNLDRTFYQAL----KALECSAVREYLEMVVIRKTRLW 633
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
+P L+DQ ++ PS V++V +TP+ V+ + V NRVLRH
Sbjct: 634 DPLADLSDQQKRLGAIHKVPSR--------CFLVNKVIITPTSVFIEPRSLEVGNRVLRH 685
Query: 287 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 346
F+ ID FLR+ F+D+ +++ + D +Y RI G+ IGDR +
Sbjct: 686 FQDHIDRFLRVQFLDDGFNRVCAV------RKPGDRMNEALYVRIRKLFDQGLQIGDRYY 739
Query: 347 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 406
EFLA+SSSQLRE W FAS LTA IR WMG+F + V+KYAAR+GQ FSSS
Sbjct: 740 EFLAYSSSQLREHGCWFFASGKDLTAEMIRRWMGDFSREKVVSKYAARMGQCFSSSVAIC 799
Query: 407 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 466
S H DE+E IPD+K Y+FSDG+GK+S A+K ++ L + PSA Q+R GG
Sbjct: 800 SFHADEVETIPDMK----HNGYIFSDGVGKMSLALAKKTRNQMNLGVD-PSALQVRLGGS 854
Query: 467 KGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 524
KGV+A DP K + LR S K++++ +L+V+ + Y+ +LNRQ+I L+S LG+ D
Sbjct: 855 KGVLAVDPNLPKGVHVQLRPSQIKFDTDHLELEVVKIATYRNGYLNRQIIILMSALGVRD 914
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT-NILKELLICGYKPDAEPFLSMM 583
+ ++ + ILTDPL+A AL S T N+L + G+ +P++ +
Sbjct: 915 AYVLELVNTMLQNTEKILTDPLEALYALSPRSDDFGTSNMLVNAIQAGFLKSGDPYIQNI 974
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 643
L FR S L EL+ K ++ +P ++G +DET L +VFVQ+
Sbjct: 975 LVLFRCSLLKELKKKAKVLVPKSACLIGVVDETGLLESNEVFVQVWD------------- 1021
Query: 644 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
+S+ ++ V + +NP LHPGD+RVL+AV++P LHH+ + VVF KG R + +M
Sbjct: 1022 NSATGNINQVITDRVSIFRNPSLHPGDLRVLQAVDIPELHHLKNVVVFSSKGERDVPSM 1080
>gi|327353920|gb|EGE82777.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1672
Score = 297 bits (760), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 189/564 (33%), Positives = 302/564 (53%), Gaps = 66/564 (11%)
Query: 161 VGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLY 219
+G + I LP+ + +++ + + + + ++ F R + + +EH A++K
Sbjct: 596 LGEDEYIPLPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTI 655
Query: 220 HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINV 279
+ Y+P + K T+ P Y+ VTPS + + P ++
Sbjct: 656 Y-----YDPMEIFNIPFPKGATNGRIPGH--------CCYIRSADVTPSTICYDIPSVDT 702
Query: 280 SNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 338
SNRV R+ R D FLR+ F DE + KI+ + S ++Y R+L TL++G
Sbjct: 703 SNRVFRYHREHADRFLRVRFCDEKYIGKIYPNN------SGNSQCMEKVYARVLRTLQHG 756
Query: 339 ILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQS 398
I IGDR++EFLAF +SQLRE A+ FAS LTAA IR MG+ IR VAKYAARLGQ
Sbjct: 757 ITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQC 816
Query: 399 FSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNP 455
FS+++ S + +I+ I D++ + YVFSDG+G++S + + S G+K P
Sbjct: 817 FSTTRAVTSCPV-QIKKIDDIE----RNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEP 871
Query: 456 PSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 514
PS FQ R GG KG++A P + +++ +R S K+ + L+++ S + LNRQLI
Sbjct: 872 PSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRHSHFSYATLNRQLI 931
Query: 515 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYK 573
+LS LG DE+F K + L+ +TD KA L+ + P + T +L +++ G++
Sbjct: 932 LILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQ 991
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN------------- 620
EPF+S +L+ +R ++ L+ K +I I G ++GC+DE++TL
Sbjct: 992 GSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDESKTLKGYFRSARPKANST 1051
Query: 621 -------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 673
++FVQ+ +R G+ + +++GL ++A+NP LHPGD+RV
Sbjct: 1052 YQERVDCLPEIFVQV----WRHSEGKYA-----------VIEGLCILARNPSLHPGDIRV 1096
Query: 674 LKAVNVPALHHMVDCVVFPQKGMR 697
+KAV+ PALHH+ D VV PQ G R
Sbjct: 1097 VKAVDAPALHHLRDVVVLPQTGDR 1120
>gi|407918335|gb|EKG11606.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina
phaseolina MS6]
Length = 1511
Score = 294 bits (753), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 187/568 (32%), Positives = 294/568 (51%), Gaps = 75/568 (13%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
I L +E+ +++ + + N + + F + ++ S +E A+DK K +
Sbjct: 350 IKLEFEVRYQLEVCLSNNILNEHNVTREFVERLAQMDKKMAKSVLEAAMDK----KRRFF 405
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
EP RK + P+ VY +TPS + F P + +SNR++R
Sbjct: 406 EPMDIFKLPLRKEAMLKQTPAH--------CVYSRSANITPSTITFASPTMEISNRIIRE 457
Query: 287 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGS--SATDITRTRIYTRILSTLRNGILIGDR 344
+ R D FLR+ F +E PRG S+ D T ++TR+ TLRNGI IGDR
Sbjct: 458 YLRFSDRFLRVKFTEE----------KPRGKIRSSRDDKDTELFTRVWRTLRNGIAIGDR 507
Query: 345 KFEFLAFSSSQLRESSAWMFA-------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQ 397
+EFLAF +SQ RE A+ FA +T ++IR MG+F EI+ VA+YA+R+GQ
Sbjct: 508 HYEFLAFGNSQFREHGAYFFAPIEDDLCDENNITPSDIRMLMGDFDEIQEVARYASRMGQ 567
Query: 398 SFSSSKETLSV--HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK--- 452
FS+++E SV H+ E +I + Y+F+DG+GK+SA A K+A + G
Sbjct: 568 CFSTTREATSVKAHVSGHE-------DIMRNGYIFTDGVGKISAALAVKIAQEFGHPTAV 620
Query: 453 DNPPSAFQIRYGGYKGVVA-ADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 511
++PPS FQ R GG KGV+A + + ++ +R S K+ + L+++ WS++ LNR
Sbjct: 621 EDPPSVFQFRLGGCKGVLAVSKELGADEIHIRRSQDKFPAPSEGLEIIKWSQFATATLNR 680
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI-LKELLIC 570
QLI +L G+ + +F KK ++ + L +T + A L+ ++ L +++
Sbjct: 681 QLIIILDARGVPNGVFMKKLQDQLSDLKKAMTSEVVALRLLQRFVDSNQVSLTLAGMVLD 740
Query: 571 GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN---------- 620
G+ EPFL +L +R + L+ K R+F+ G ++GCLDET +L+
Sbjct: 741 GFMGIKEPFLMSVLHLWRTWSIKYLKEKARLFVGEGAFLLGCLDETASLHGHFYSEQNWK 800
Query: 621 ------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
Q+FVQ+S + + I++G+ +VA+NP LHPGDVRV+
Sbjct: 801 SLQTNLLPQIFVQVSDINHPGRYK--------------IIEGVCIVARNPSLHPGDVRVV 846
Query: 675 KAVNVPALHHMVDCVVFPQKGMRYILTM 702
+AVN P LHH+ + VVFPQ G R I M
Sbjct: 847 QAVNQPKLHHLKNVVVFPQTGDRDIPNM 874
>gi|154290540|ref|XP_001545863.1| hypothetical protein BC1G_15614 [Botryotinia fuckeliana B05.10]
Length = 1173
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 182/566 (32%), Positives = 298/566 (52%), Gaps = 32/566 (5%)
Query: 146 ETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAP 205
+T A RSLD + + LP+E+ +++ + + V +D F + A
Sbjct: 121 KTTQAGLRSLDPSSV-----KVNLPFEVRYQLEVCISREIVNEYNIDEKFINSL----AE 171
Query: 206 VSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQV 265
+S A + L ++ E + S+ L D + S + S + + + V
Sbjct: 172 LSAQDPAKARNLLEYVAE--HYSSKRLYDPSSIFTNSEALSFSALTDIPHYCAFSRKATV 229
Query: 266 TPSRVYFCGPEINVSNRVLRHFRRDIDN--FLRISFIDEDLD-KIHSTDLSPRGSSATDI 322
TP+ + F P + +NRVLRH+ ++ FLR+ F DE + +I+S A I
Sbjct: 230 TPTSILFNSPTVETTNRVLRHYSKENQEGRFLRVQFTDEKFEGRINSC--------ADKI 281
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNF 382
I+TR+ + NGI IGDR +EFLAF +SQ RE+ A+ F L+ +IR+WMG F
Sbjct: 282 RNDAIFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDIRQWMGTF 341
Query: 383 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 442
I VAKYAARLGQ FS+++ + +I IPD++ + +Y F+DG+GK+S A
Sbjct: 342 SHINVVAKYAARLGQCFSTTRAIKGLSAPDIVKIPDIE----RGRYCFTDGVGKISPYLA 397
Query: 443 RKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLA 500
+ +AS+ L+ D PSAFQ R GG KG++ P + ++ +R S +K+ + L+++
Sbjct: 398 QMIASELKLRVDLAPSAFQFRLGGCKGILVVSPDAKDNEVHIRKSQQKFTAAYNGLEIIR 457
Query: 501 WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 560
S++ LNRQ I++LS LG+ DE+F K + + +++ A L +
Sbjct: 458 CSQFSSATLNRQTITILSALGVKDEVFLKMLSRQLSDYQSAMSNNAIALGLLNRYIDDNH 517
Query: 561 TNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 619
I + +++ G+ + EPF+ +L +RA + L+ K +I + NG ++GC+DET TL
Sbjct: 518 MTINIAGMILNGFMSEKEPFVLSLLHLWRAWSIKLLKEKAKIIVENGAFVLGCVDETNTL 577
Query: 620 NYGQVFVQISGAGYRQLHGESSLF---SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 676
G Y++ + Q +++G+ +V +NP LHPGD+RV++A
Sbjct: 578 RGYTKPTVAYGTTYKETELPQIFIQVPDRENTTQYNVIEGICLVGRNPSLHPGDLRVVQA 637
Query: 677 VNVPALHHMVDCVVFPQKGMRYILTM 702
VN+PALHH+ D VVFPQ G R + +M
Sbjct: 638 VNIPALHHLRDVVVFPQSGERDVPSM 663
>gi|425783248|gb|EKV21105.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium
digitatum Pd1]
Length = 1347
Score = 292 bits (747), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 201/623 (32%), Positives = 328/623 (52%), Gaps = 50/623 (8%)
Query: 103 DFTPSNFIGQSTGLCMELPYRL--ELPDFKENFAYYKESEDR------FVLETGSAYSRS 154
D P TG C+ L + + F + +++ E DR ++ + S +++
Sbjct: 308 DVDPKIHRVNDTGHCLTLVGDIFKDYNIFIRDGSHFVEKTDRPVPVWHWIDFSESKSNKA 367
Query: 155 LDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH- 213
L+ +G + I LP+++ +++ + + G ++ + F V + +E
Sbjct: 368 SALLQDLGDQNYIHLPFKVRYQLEVCLSQGYLSEFSMSREFVEKVKDLGDDQATRLLEFV 427
Query: 214 ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFC 273
A +K +L +P ++ K +T PS ++H +VTP+ +Y+
Sbjct: 428 ATEKKQYL-----DPMEIFDLKFFKRVTDSKIPSY--------CCFMHTARVTPTTIYYN 474
Query: 274 GPEINVSNRVLRHF--RRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRI 331
P +++SNRV+R + + FLR+ F DE + R +++ + IYTR+
Sbjct: 475 TPTVDISNRVVREWSTKSAPGRFLRVRFTDERTEG--------RINASLGDSNDEIYTRV 526
Query: 332 LSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKY 391
TL NGI IGDR +EFLAF +SQ RE A+ FA G++AA IR WMG F IRNVAKY
Sbjct: 527 KRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATIRAWMGQFNHIRNVAKY 586
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 451
AARLGQ FS+++ + ++ DV + + FSDG+GKVS A+ V S+ +
Sbjct: 587 AARLGQCFSTTRAFTGSSV-QVATCNDVV----RNGFTFSDGVGKVSKFLAQMVTSQHNI 641
Query: 452 K---DNPPSAFQIRYGGYKG--VVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQP 506
K PSAFQ R GG KG VV+ DP +++ +R S +K+E+ L+++ WS+Y
Sbjct: 642 KTLTGESPSAFQFRLGGAKGMLVVSPDPM-PQEVHIRPSQQKFETTQAGLEIIRWSQYSL 700
Query: 507 CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILK 565
LNRQLI +LS LGI D++F K + ++ + KA L+ + P + T IL
Sbjct: 701 ATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINLLQKYIDPNQTTLILA 760
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQV 624
+++ G++ + EPF + ML+ +++ L L+ K +I I G +++G +DET L Y +
Sbjct: 761 QMVSDGFRQNEEPFANTMLELWKSWHLKHLKEKAKIAIDQGANLLGVMDETGVLKGYFKN 820
Query: 625 FVQISGAGYRQ-LHGESSLFSS----SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 679
+ GA Y Q L +F + + +++GL ++A+NP LHPGD+RV++AVN
Sbjct: 821 TLPRRGASYAQKLAALPEIFVQICRLEGNGEYEVIEGLCILARNPSLHPGDIRVVRAVNR 880
Query: 680 PALHHMVDCVVFPQKGMRYILTM 702
P L + D VV PQ G + I +M
Sbjct: 881 PELKGLRDVVVLPQTGDQDIASM 903
>gi|326481841|gb|EGE05851.1| hypothetical protein TEQG_04860 [Trichophyton equinum CBS 127.97]
Length = 1579
Score = 291 bits (746), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 178/556 (32%), Positives = 288/556 (51%), Gaps = 90/556 (16%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLYHLKECCYE 227
+ Y + +++ + + +G ++ +D +F + ++ +E+ A +K +L +
Sbjct: 537 ISYAVRYQLEVCISHGFLSEYTIDKDFAKKLESLGERDGKDLLEYVAQEKTVYL-----D 591
Query: 228 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 287
P Q+ +T+R P Y+ VTPS +YF P ++ SNRV+RH+
Sbjct: 592 PMEIFNIQFFSGVTNRRIPKY--------CCYMRSATVTPSTIYFNTPTVDTSNRVIRHY 643
Query: 288 RRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFE 347
D FLR+ F DE + R +S + ++TR+ T+ NGI +GDR +E
Sbjct: 644 IEYADRFLRVRFTDEKYEG--------RINSTYNNCMDEVFTRVKRTMTNGITVGDRHYE 695
Query: 348 FLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS 407
FLAF +SQ RE A+ FAS LTAA IR WMG+F +I+ VAK+AARLGQ FS+++
Sbjct: 696 FLAFGNSQFREHGAYFFASLPNLTAANIRAWMGHFSDIKIVAKHAARLGQCFSTTRAVTG 755
Query: 408 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRYG 464
+ EI E+ + Y+FSDG+G++S A+ + ++ L+ + PPS FQ R G
Sbjct: 756 CPVTVREI-----DEVERNGYIFSDGVGRISKFLAQMIMTEFKLQTPSEEPPSVFQFRLG 810
Query: 465 GYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWD 524
G S L+++ WS++ LNRQLI +LS LG+ D
Sbjct: 811 G-------------------------SIHNGLEIIRWSQFAAAHLNRQLIVVLSALGVSD 845
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSMM 583
EIF +K R + ++ +T KA L+ + P + T IL +++ G++ +PF+ +
Sbjct: 846 EIFIQKLRLMLEDMEQAMTSETKAMSMLQKRVDPNQMTLILAQMVHDGFQGSCDPFVKSL 905
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN--------------------YGQ 623
L+ +RA ++ L+ K ++FI G + GCLDET TL +
Sbjct: 906 LELWRAWQIKYLKEKAKVFIDQGACLFGCLDETATLKGYHEKKRPSIEATYEERLEYLPE 965
Query: 624 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 683
+FVQ+ F + ++ +++G ++A+NP LHPGD+RV++AVNVPALH
Sbjct: 966 IFVQV--------------FDNEEEKKYRVIEGPCILARNPSLHPGDIRVVRAVNVPALH 1011
Query: 684 HMVDCVVFPQKGMRYI 699
H+ D +VFPQ G R +
Sbjct: 1012 HLKDVIVFPQTGDRDV 1027
>gi|260801473|ref|XP_002595620.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
gi|229280867|gb|EEN51632.1| hypothetical protein BRAFLDRAFT_64730 [Branchiostoma floridae]
Length = 1282
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 184/446 (41%), Positives = 257/446 (57%), Gaps = 35/446 (7%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V RV VTP+R+ F PEI NR+LR + D NF+R+S DED K+ SA
Sbjct: 257 VRRVFVTPTRLMFMHPEIVRDNRILRKYGED--NFMRVSIRDEDFCKL----------SA 304
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 379
+TR+ L++G+L+GDRK+ FLA S+SQLRE + W FAS TA IR+ M
Sbjct: 305 VGGEEETTFTRVKKFLQDGLLVGDRKYVFLAASNSQLREHNVWFFASDGKNTAESIRKDM 364
Query: 380 GNFREIRNVAKYAARLGQSFSSSKETLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 437
G+F +I+ A AR+GQ FS+++ +++ + E+ IP+VK Y FSDGIGK+
Sbjct: 365 GDFSDIKCPATVLARMGQCFSNTEPSVTALISAGEVVRIPEVKGGYPNV-YCFSDGIGKI 423
Query: 438 SAEFARKVASKCGL---KDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESEL 493
S A+KV + + + PSA+QIRYGG KGVVA DP+ S + +R SM K+ S
Sbjct: 424 SQSLAQKVNERRAIGRGETEVPSAYQIRYGGVKGVVAVDPSLDSDVMEVRPSMMKFLSFD 483
Query: 494 TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE 553
++++ S +LNRQ+I++LS LG+ D+ F++ Q ++ L +L A E+++
Sbjct: 484 QQIEICMTSHPGRLYLNRQVITILSALGVPDQTFQQLQEAMLQNLSDMLVREDVAFESMK 543
Query: 554 LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMG 611
+ L L CG EPF MLQ L ELR + RI IP GR+M+G
Sbjct: 544 RRAQPLGLP-LGRLSRCGLHVTTEPFFRAMLQKMFTCFLGELRRRARIEIPPEYGRNMLG 602
Query: 612 CLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 671
LDET TL YGQVFVQ + E +++ V G VVV +NPC HPGD+
Sbjct: 603 VLDETGTLEYGQVFVQYT---------EDITDKGGQTK----VTGDVVVTRNPCFHPGDL 649
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGMR 697
R L+AV++P+LHHMVD +VFP KG R
Sbjct: 650 RKLRAVDIPSLHHMVDVIVFPSKGPR 675
>gi|242812975|ref|XP_002486072.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces
stipitatus ATCC 10500]
gi|218714411|gb|EED13834.1| RNA-directed RNA polymerase (Sad-1), putative [Talaromyces
stipitatus ATCC 10500]
Length = 1341
Score = 288 bits (736), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 180/549 (32%), Positives = 304/549 (55%), Gaps = 40/549 (7%)
Query: 167 IALPYEILFKINLLVQNGCVAG-PLLDSNFYRLVDPYRAPVSISCIEH-ALDKLYHLKEC 224
I LP+ I +++ + + +G ++ F + + +++ +EH A+DK +
Sbjct: 419 IHLPFAIRYQLEVCISHGYISEYTAAKPEFIQRLKDMEERKALALLEHVAMDK-----KV 473
Query: 225 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 284
++ + + T R+ PS + V VTPS +Y+ P + ++NRVL
Sbjct: 474 YWDAMNIFDILFPRGTTRRNIPSYCCM--------VRTATVTPSMIYWNTPSMEITNRVL 525
Query: 285 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 344
R + D FLR+ F DE + R +S T I++RI T+ NGI++GDR
Sbjct: 526 RRYSEHADRFLRVRFKDEKFEG--------RINSTHHDTMDEIFSRIKRTMTNGIVLGDR 577
Query: 345 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 404
K+EFLAF +SQ RE A+ FAS +TA+ IR WMG F +I+NVAKYAARLGQ FS+++
Sbjct: 578 KYEFLAFGNSQFREHGAYFFASDAHVTASNIRAWMGEFSDIKNVAKYAARLGQCFSTTRA 637
Query: 405 TLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQI 461
+ + E++ IPDV+ + Y FSDG+G++S A+ + ++ PPSA+Q
Sbjct: 638 INTCRV-ELKRIPDVE----RGPYTFSDGVGRISRFLAQMTQQELNIRTADQEPPSAYQF 692
Query: 462 RYGGYKGV-VAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTL 520
R GG KG+ V +D +++ +R S K+ + L+++ WS++ LNRQLI++LS+L
Sbjct: 693 RLGGCKGMLVLSDEPRGREIEIRPSQEKFPANHQGLEIIRWSQFSSATLNRQLIAVLSSL 752
Query: 521 GIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYKPDAEPF 579
GI D++F K + V L+ A L+ + P E T ++ +++ G+ +PF
Sbjct: 753 GIEDKVFHGKLQRMVSNLEEATHYDRAAMHLLQKYIDPNEMTLVISKIVSDGFLQARDPF 812
Query: 580 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL---NYGQVFVQISGAGYRQL 636
++ ++ ++A ++ L+ K +I I +G ++G +DET TL +Y V ++ + +L
Sbjct: 813 ITSVITLWKAWQIKYLKEKAKITIEDGACVLGVMDETATLKGFSYENV-EKVHLSRDSKL 871
Query: 637 HGESSLFSS---SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 693
+F + ++ +V+G+ ++A+NP LHPGD+RV++AVN L H+ D VV PQ
Sbjct: 872 DALPEIFLQVYRADEKKYGVVEGVCILARNPSLHPGDIRVVRAVNRSELAHLKDVVVLPQ 931
Query: 694 KGMRYILTM 702
G R I +M
Sbjct: 932 VGDRDIASM 940
>gi|440633273|gb|ELR03192.1| hypothetical protein GMDG_01175 [Geomyces destructans 20631-21]
Length = 1568
Score = 286 bits (733), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 175/546 (32%), Positives = 287/546 (52%), Gaps = 37/546 (6%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
LP+E+ +++ + C++ +L+ + + P S ++ ++ + E E
Sbjct: 419 LPFEVRYQLEV-----CISRNILEVHN---ITPEFVKELASLVDTDKERATCILEYISEQ 470
Query: 229 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 288
+ + D + + SP + Y + VTP+ +YF P + SNRV+R F
Sbjct: 471 GKRIYDVMSIFKDPDALAHSPKSKIPTYCAYTRKATVTPTTIYFSSPTVETSNRVIRKFS 530
Query: 289 RDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFE 347
D FLR+ F DE + +I++ A I +++TR+ TL+NGI IGDR FE
Sbjct: 531 AHGDRFLRVQFTDELFEGRINAC--------ADKIRNDQLFTRVYRTLKNGIRIGDRHFE 582
Query: 348 FLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS 407
FLAF +SQ RE+ A+ F GL+ +IR+WMG F I VAKYAARLG FS+++ +
Sbjct: 583 FLAFGNSQFRENGAYFFCPTDGLSCVQIRDWMGKFHHINVVAKYAARLGLCFSTTRAIRN 642
Query: 408 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 467
M +E+ E+ + Y F+DG+GK+S + +A++ L + PS Q R GG K
Sbjct: 643 TGMTVLEL-----QEVERNGYNFTDGVGKISPFLMKMIATELHLL-HEPSVVQFRMGGCK 696
Query: 468 GVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEI 526
G++A P + +++ +R S K+ +E L+++ S + LNRQ I++LS LG+ D +
Sbjct: 697 GILAISPDAKGQEIHIRKSQTKFTAEYMGLEIIRTSSHSVATLNRQTITILSALGVEDHV 756
Query: 527 FEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQ 585
F + E + + DP KA E L + T ++ +++ G+ EPF+ +L
Sbjct: 757 FNRMLDEQLSNYMDAMNDPDKALELLGRYVDDNHMTMMIASMVLDGFMRTKEPFVLSLLH 816
Query: 586 TFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES----- 640
+R+ + L+ K +I + G ++GC DET+TL + + + AG + E
Sbjct: 817 LWRSWSIKLLKEKAKIIVEKGAFVLGCTDETQTL---RGHSKTTNAGKGTITAEDIDKLP 873
Query: 641 ----SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 696
+ R I++GL +V +NP LHPGD+RV++AV+VPALHH+ D VVF Q G
Sbjct: 874 QIYLQVTDRKDPRHNVIIEGLCLVGRNPSLHPGDIRVVQAVDVPALHHLRDVVVFSQLGD 933
Query: 697 RYILTM 702
R + M
Sbjct: 934 RDVPGM 939
>gi|156035913|ref|XP_001586068.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980]
gi|154698565|gb|EDN98303.1| hypothetical protein SS1G_13161 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1404
Score = 283 bits (723), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 176/551 (31%), Positives = 292/551 (52%), Gaps = 39/551 (7%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNF-YRLV-----DPYRAPVSISCIEHALDKLYH 220
+ LP+E+ +++ + + + +D F Y L DP +A + +E+ + Y
Sbjct: 364 VPLPFEVRYQLEVCISREIINEYNIDEKFIYSLAKVAAQDPAKAR---NLLEYVAEN-YS 419
Query: 221 LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVS 280
K Y PS T+ +S + + + + VTPS +YF P + +
Sbjct: 420 SKRL-YNPSSIFTNNDALSFSSMT-------DIPHYCAFSRKATVTPSSIYFSSPTVETT 471
Query: 281 NRVLRHFRRDIDN--FLRISFIDEDLD-KIHSTDLSPRGSSATDITRTRIYTRILSTLRN 337
NRVLR++ ++ FLR+ F DE + +I++ A I ++TR+ + N
Sbjct: 472 NRVLRNYSKENKEGRFLRVQFTDEKAEGRINAC--------ADKIRNDGLFTRVFRVISN 523
Query: 338 GILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQ 397
GI IGDR +EFLAF +SQ RE+ A+ F L+ +IR+WMG F I VAKYAARLGQ
Sbjct: 524 GIRIGDRHYEFLAFGNSQFRENGAYFFCPPAYLSCDDIRQWMGTFSHINVVAKYAARLGQ 583
Query: 398 SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PP 456
FS+++ + ++ IPD++ + Y F+DG+GK+S A+ +A + L+ N P
Sbjct: 584 CFSTTRAIRGLSAPDLVKIPDIE----RNGYCFTDGVGKISPFLAQMIAEELKLRTNSAP 639
Query: 457 SAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 515
SAFQ R GG KG++ P + + ++ +R S +K+ + L+++ S++ LNRQ I+
Sbjct: 640 SAFQFRLGGCKGILVVSPDAKNNEVHIRKSQQKFTAVYNGLEIIRCSQFSSATLNRQTIT 699
Query: 516 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI-LKELLICGYKP 574
+LS+LG+ DE+F E + +++ A L I + +++ G+
Sbjct: 700 ILSSLGVKDEVFLNMLSEQLSDYQNAMSNNTIALNLLNRYIDDNYMTINIASMILNGFMT 759
Query: 575 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR 634
+ EPF+ +L +RA + L+ K +I + NG ++GC+DET TL G Y+
Sbjct: 760 EKEPFVLSLLHLWRAWSIKLLKEKAKIIVENGAFVLGCVDETNTLRGYTKPTVACGTTYK 819
Query: 635 QLHGESSLF---SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 691
+ + + Q +++G+ +V +NP LHPGD+RV++AVNVPALHH+ D VVF
Sbjct: 820 EDELPQIFIQVPNRENTGQYNVIEGICLVGRNPSLHPGDLRVVQAVNVPALHHLRDVVVF 879
Query: 692 PQKGMRYILTM 702
PQ G R + +M
Sbjct: 880 PQSGERDVPSM 890
>gi|406868525|gb|EKD21562.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1494
Score = 282 bits (721), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 212/697 (30%), Positives = 347/697 (49%), Gaps = 89/697 (12%)
Query: 60 LLIQLLGAPRIFQKGIRSPDLLYE-SPVFNFFKEVPDDQWVRTTD--FTPSNFIGQSTGL 116
L+I L P+ F+K + + SP +N D W R TD + P + L
Sbjct: 259 LIISLNSPPQFFRKRVDEYAGHSDGSPQWNEM-----DTWFRQTDVVYDPYRLQTEKITL 313
Query: 117 CMELP---------YRLELPDFKENFAYY---KESEDRFVLETGS------AYSRSLDLV 158
+ P Y E P+ + A + K++ + +E + SR DL
Sbjct: 314 HKDQPVIDIGRWTTYFFEFPNLDNSPATFDTIKQALQDYNIEITTISSLNKVPSREPDLW 373
Query: 159 PIVGP--------------PDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRA 204
P++ P LP+E+ +++ + C++ +L N Y + +
Sbjct: 374 PLIDPRHSADASGDLQYLSEGAYVLPFEVRYQLEV-----CISREIL--NEYNVTRGFVK 426
Query: 205 PVS-ISCIEHA-----LDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLV 258
+S I+ ++ A L+ + ++ Y+P DQ T++++ +
Sbjct: 427 KLSEIASVDAAKARNILEYVAGQEKRVYDPMTIFEDQEALAFTAKTE-------IPHYCA 479
Query: 259 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN--FLRISFIDEDLDKIHSTDLSPRG 316
Y + +TPS +YF P + +NRVLRH+ R+ + FLR+ F DE + R
Sbjct: 480 YSRKATITPSTMYFSSPTVETTNRVLRHYARENRDGRFLRVQFTDELAEG--------RI 531
Query: 317 SSATDITRT-RIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 375
++ D + ++TRI TL NGI IGDR +EFLAF +SQ RE+ A+ F L+ +I
Sbjct: 532 NACVDNQKNDELFTRIYRTLFNGIQIGDRHYEFLAFGNSQFRENGAYFFCPTEHLSCDDI 591
Query: 376 REWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIG 435
R WMG+F +I+ VAKYAARLGQ FS+++ + +I I DV+ Y F+DG+G
Sbjct: 592 RGWMGHFSDIKVVAKYAARLGQCFSTTRAINGLSKPDIVKIADVE----NNGYTFTDGVG 647
Query: 436 KVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESEL 493
K+S A+ ++++ GL+ N PSAFQ R GG KGV+ P + K++ +R S +K+ +
Sbjct: 648 KISPFLAQMISAELGLRTNTAPSAFQFRLGGCKGVLVVWPDAKEKEVHIRMSQQKFTAVY 707
Query: 494 TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD-AILTDPLKAQEAL 552
L+++ +++ LNRQ I++LS LG+ DE+F K E + A+ D L
Sbjct: 708 NGLEIIRCARFSCATLNRQTITILSALGVPDEVFLKMLSEQLANYQTAMDNDDAAVSLLL 767
Query: 553 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 612
+ + T + ++ G+ + +PF+ +L +R+ + L+ K +I I NG ++GC
Sbjct: 768 RYIDDNQMTINIATMIRNGFMAEKDPFVLSLLHLWRSWSIKLLKEKAKIIIENGAFVLGC 827
Query: 613 LDETRTLNYGQVFVQISGAGYRQLHGESSL-------FSSSRSRQRFIVQGLVVVAKNPC 665
+DET TL IS A + + E L S + I+ G+ +V +NP
Sbjct: 828 VDETFTLRG----YTISTAPHGEQVAEEELPQIFLQVPDKSDPNRYNIITGICLVGRNPS 883
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
LHPGD+RV++AV+VPALHH+ D VVFP G R + +M
Sbjct: 884 LHPGDLRVVQAVDVPALHHLRDVVVFPASGDRDVPSM 920
>gi|367021614|ref|XP_003660092.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
gi|347007359|gb|AEO54847.1| hypothetical protein MYCTH_2297939 [Myceliophthora thermophila ATCC
42464]
Length = 1033
Score = 282 bits (721), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 187/559 (33%), Positives = 290/559 (51%), Gaps = 26/559 (4%)
Query: 152 SRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCI 211
S S DL I+ P IALP+++ +++ + V G ++ + + + + P +
Sbjct: 409 SWSNDLA-ILSPSTHIALPFDVRYQLEVCVSRGILSEYNIGREWLEKLSSFSGPANWG-- 465
Query: 212 EHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPA-ISLDDGLVYVHRVQVTPSRV 270
A ++ + E + R + D + + PA + + D + R VTP+R+
Sbjct: 466 --AANRARLILEYAADQGRPIHDPLELFKDHGAMTYYPATLHIPDYCALIRRAIVTPTRM 523
Query: 271 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATDITRTRIYT 329
YF P + SNRV+R ++ D+FLR+ F DE LD +I + ++ +Y
Sbjct: 524 YFSTPTVETSNRVVRRYQHIQDHFLRVQFTDELLDGRIRACEVD---------RDDELYA 574
Query: 330 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY--GLTAAEIREWMGNFREIRN 387
R+ + GI +G ++FLAF +SQ+RES+A+ F +T IR+WMGNF I +
Sbjct: 575 RVCRVMTQGIRMGKWHWKFLAFGNSQIRESAAFFFCEPEDGSVTCDSIRQWMGNFDHITS 634
Query: 388 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
VAK AARLGQ FS+++ + I IPDV+ E G + F+DGIGK+S A VA
Sbjct: 635 VAKLAARLGQCFSTTRLLHCISSPRIARIPDVESENG---FCFTDGIGKISLPLACLVAE 691
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQP 506
L D PPSA Q R GG KGV+ P ++ +R S K+ +E L+++ S++
Sbjct: 692 DWKL-DRPPSAVQFRMGGCKGVLVQWPNVKGTEIHIRPSQEKFCAEYNGLEIIRCSQFSC 750
Query: 507 CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILK 565
LNRQ I +LS LG+ DE+F + DA +TD A E L+ + T +
Sbjct: 751 ATLNRQTILILSCLGVSDEVFIDMMASQIANFDAAMTDKDTAVELLDNYVDENLTTTTIA 810
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQV 624
+L G+ EPF+ +LQ +R+ + L+ K R+ + G ++GC+DET TL Y +
Sbjct: 811 SMLRNGFMHTREPFVRTVLQLWRSWSIKALKEKARLVVEQGAFVLGCVDETGTLRGYSRA 870
Query: 625 FVQISGAGYRQLHGESSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 683
S QL R + +V GL +V +NP LHPGD+RV++AV+VP L
Sbjct: 871 TEGQSNVSRDQLPQIFFQVPDRDHRHAYKVVTGLCIVGRNPSLHPGDIRVVEAVDVPQLR 930
Query: 684 HMVDCVVFPQKGMRYILTM 702
H+ D VVFP +G R + +M
Sbjct: 931 HLRDVVVFPLRGDRDVPSM 949
>gi|336463319|gb|EGO51559.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2508]
gi|350297473|gb|EGZ78450.1| suppressor of ascus dominance [Neurospora tetrasperma FGSC 2509]
Length = 1633
Score = 281 bits (720), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 187/598 (31%), Positives = 299/598 (50%), Gaps = 82/598 (13%)
Query: 140 EDRFVLETGSAYSRSL--DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYR 197
+DR+ E SRS D + PP I+LP+++ +++ + + G + +D F
Sbjct: 418 DDRYGHEIQQVSSRSWGNDFSLLAAPPR-ISLPFDVRYQLEVCISQGIINEHNIDRPFLE 476
Query: 198 LV------------DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSK 245
+ D R + E+A +++ E ++ + LT +M
Sbjct: 477 KLMEFCDNDNSFGKDRARLILEYVADEYAGKRIFDPMEL-FKDNAALTYFPTSFM----- 530
Query: 246 PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 305
+ + +V RV +TP+R+YF P + +NRV+R +R D F+RI F DE L+
Sbjct: 531 -------IPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIRQWRHAQDYFIRIQFTDEVLE 583
Query: 306 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 365
G + ++ R+ L G+ +G ++FLAF +SQ+RE+ A+MF
Sbjct: 584 ----------GRIKSGEAELPLFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFC 633
Query: 366 SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 425
+ LT +R WMG F I+ +AKYAARLGQ FS+++ + I IPDV+ K
Sbjct: 634 EQSNLTCDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIITIPDVE----K 689
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRD 484
+ F+DGIGK+S A+ VA + D PPSA+Q R GG KGV+ P ++ +R
Sbjct: 690 DGFCFTDGIGKISPLLAKIVAHDWSI-DPPPSAYQFRMGGCKGVLVTWPDVKGMEVHIRK 748
Query: 485 SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
S K+ +E L+V+ S++ LNRQ+I++LS+LG+ D++F + + +A + D
Sbjct: 749 SQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMED 808
Query: 545 PLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
KA L+ + T I+ E+L G+ EPF+ +LQ +R+ + L+ K R+ +
Sbjct: 809 KQKATAILKTFIDENHMTPIIAEMLAYGFMESQEPFVRTLLQLWRSWSIKTLKEKARLNV 868
Query: 604 PNGRSMMGCLDETRTL----------------NYGQVFVQIS---GAGYRQLHGESSLFS 644
++GC+DET TL Q+F+QI GYR
Sbjct: 869 EKSAFVLGCVDETGTLKGHMKVTEDWKDVPSEKLPQIFLQIPDDVNGGYR---------- 918
Query: 645 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
++ G VV +NP LHPGD+RV++AV+VPAL H+ D VVFP G R + +M
Sbjct: 919 --------VITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLAGDRDVPSM 968
>gi|164429758|ref|XP_964248.2| hypothetical protein NCU02178 [Neurospora crassa OR74A]
gi|157073607|gb|EAA35012.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 1049
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 183/598 (30%), Positives = 298/598 (49%), Gaps = 82/598 (13%)
Query: 140 EDRFVLETGSAYSRSL--DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYR 197
+DR+ + SRS D + PP I+LP+++ +++ + + G + +D F
Sbjct: 414 DDRYGHDIQQVSSRSWSNDFSLLAAPPR-ISLPFDVRYQLEVCISQGIINEHNIDRPFLE 472
Query: 198 LV------------DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSK 245
+ D R + E+A +++ E ++ +
Sbjct: 473 KLMEFCDNDNSFGKDRARLILEYVADEYAGKRIFDPMEL-----------FKDHAALAYF 521
Query: 246 PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 305
P+S + + +V RV +TP+R+YF P + +NRV+R ++ D F+RI F DE L+
Sbjct: 522 PTS--FMIPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIRQWKHAQDYFIRIQFTDEVLE 579
Query: 306 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 365
G + ++ R+ L G+ +G ++FLAF +SQ+RE+ A+MF
Sbjct: 580 ----------GRIKSGEAELPLFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFC 629
Query: 366 SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 425
+ LT +R WMG F I+ +AKYAARLGQ FS+++ + I IPDV+ K
Sbjct: 630 EQSNLTGDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE----K 685
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRD 484
+ F+DG+GK+S A+ VA + D PPSA+Q R GG KGV+ P ++ +R
Sbjct: 686 DGFCFTDGVGKISPLLAKIVAHDWSI-DPPPSAYQFRMGGCKGVLVTWPDVKGMEVHIRK 744
Query: 485 SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
S K+ +E L+V+ S++ LNRQ+I++LS+LG+ D++F + + +A + D
Sbjct: 745 SQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMED 804
Query: 545 PLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
KA L+ + T I+ E+L G+ EPF+ +LQ +R+ + L+ K R+ +
Sbjct: 805 KQKATAILKTFIDENHMTPIIAEMLAYGFMGSQEPFVRTLLQLWRSWSIKTLKEKARLNV 864
Query: 604 PNGRSMMGCLDETRTL----------------NYGQVFVQIS---GAGYRQLHGESSLFS 644
++GC+DET TL Q+F+QI GYR
Sbjct: 865 EKSAFVLGCVDETGTLKGHMKVIEDWKDVSSEKLPQIFLQIPDDVNGGYR---------- 914
Query: 645 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
++ G VV +NP LHPGD+RV++AV+VPAL H+ D VVFP G R + +M
Sbjct: 915 --------VITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLTGDRDVPSM 964
>gi|398388269|ref|XP_003847596.1| RNA-directed RNA polymerase, partial [Zymoseptoria tritici IPO323]
gi|339467469|gb|EGP82572.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 959
Score = 280 bits (716), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 173/550 (31%), Positives = 288/550 (52%), Gaps = 53/550 (9%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
L + + +++ + + G + +D F + + ++ +E D+ + Y+P
Sbjct: 153 LAFSVHYQLEVCISVGALHESNIDRAFLQRLSTIETVRAVKMLEKIADEGKRI----YKP 208
Query: 229 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 288
S + R + + +P+ + +TP+ +YF P + SNRV+R+++
Sbjct: 209 SDIFSLHNRVSVVEKKRPAY--------CTKIPAANITPTTIYFATPVLETSNRVVRNYK 260
Query: 289 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 348
+ D F+R+ F DE H L + A + +++RI + +GI + DR +EF
Sbjct: 261 KYEDRFMRVKFTDEK----HKGQLQSQDGQAMN----EVFSRIKQAMTHGIRVADRHYEF 312
Query: 349 LAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV 408
LAF ++Q RE A+ FAS L A IR+WMGNF +I+NVAKY +RLGQ +++++
Sbjct: 313 LAFGNAQFREHGAYFFASTPDLNANMIRQWMGNFTQIKNVAKYISRLGQCYTTTRAI--P 370
Query: 409 HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG 468
H +E IPDV+ + Y F+DG+GK+S AR VA L DN PS +Q R G KG
Sbjct: 371 HSVNVERIPDVE----RNGYCFTDGVGKISPLLARMVADHFRL-DNCPSVYQFRMAGCKG 425
Query: 469 VVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIF 527
V+A DP+ + +R S K+ +E L++ S++ LN QLI ++S+LG+ D +F
Sbjct: 426 VLAVDPSLKGMTVQIRPSQEKFPAEFHGLEICKMSQFSAANLNVQLILVMSSLGVPDNVF 485
Query: 528 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTN----ILKELLICGYKPDAEPFLSMM 583
K R+ + L +TD + AL+L+ + N L +++ G+ +PF
Sbjct: 486 VNKYRDMLADLALAMTD---EEMALKLLQKNIDFNQMTIYLATIILDGFMATKDPFTISC 542
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL- 642
L+ +R+ L L+ K R+F+ G + G DET TL GQ G++ G+ ++
Sbjct: 543 LRLWRSWNLKYLKEKARVFVDQGAFVFGVTDETGTLQ-GQF------DGFKTDEGDMAVP 595
Query: 643 ---------FSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFP 692
++ + ++QG + A+NP LHPGD+R+++AV+VPALHH+ DCVV P
Sbjct: 596 PTLPQIFLQIPDPNAKGGYTVIQGPCLFARNPSLHPGDIRMVEAVDVPALHHLKDCVVLP 655
Query: 693 QKGMRYILTM 702
Q G R + M
Sbjct: 656 QTGDRDLANM 665
>gi|13641451|gb|AAK31733.1| suppressor of ascus dominance [Neurospora crassa]
Length = 1638
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 183/598 (30%), Positives = 298/598 (49%), Gaps = 82/598 (13%)
Query: 140 EDRFVLETGSAYSRSL--DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYR 197
+DR+ + SRS D + PP I+LP+++ +++ + + G + +D F
Sbjct: 414 DDRYGHDIQQVSSRSWSNDFSLLAAPPR-ISLPFDVRYQLEVCISQGIINEHNIDRPFLE 472
Query: 198 LV------------DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSK 245
+ D R + E+A +++ E ++ +
Sbjct: 473 KLMEFCDNDNSFGKDRARLILEYVADEYAGKRIFDPMEL-----------FKDHAALAYF 521
Query: 246 PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 305
P+S + + +V RV +TP+R+YF P + +NRV+R ++ D F+RI F DE L+
Sbjct: 522 PTS--FMIPNHCAWVRRVTITPTRIYFSTPCVEPTNRVIRQWKHAQDYFIRIQFTDEVLE 579
Query: 306 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 365
G + ++ R+ L G+ +G ++FLAF +SQ+RE+ A+MF
Sbjct: 580 ----------GRIKSGEAELPLFLRVYRVLEKGVAMGPWHWKFLAFGNSQIREAGAFMFC 629
Query: 366 SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 425
+ LT +R WMG F I+ +AKYAARLGQ FS+++ + I IPDV+ K
Sbjct: 630 EQSNLTGDMMRAWMGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE----K 685
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRD 484
+ F+DG+GK+S A+ VA + D PPSA+Q R GG KGV+ P ++ +R
Sbjct: 686 DGFCFTDGVGKISPLLAKIVAHDWSI-DPPPSAYQFRMGGCKGVLVTWPDVKGMEVHIRK 744
Query: 485 SMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
S K+ +E L+V+ S++ LNRQ+I++LS+LG+ D++F + + +A + D
Sbjct: 745 SQEKFVAEFNGLEVVRCSQFSTATLNRQIIAVLSSLGVPDQVFVDMMEQQLSDFNAAMED 804
Query: 545 PLKAQEALE-LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
KA L+ + T I+ E+L G+ EPF+ +LQ +R+ + L+ K R+ +
Sbjct: 805 KQKATAILKTFIDENHMTPIIAEMLAYGFMGSQEPFVRTLLQLWRSWSIKTLKEKARLNV 864
Query: 604 PNGRSMMGCLDETRTL----------------NYGQVFVQIS---GAGYRQLHGESSLFS 644
++GC+DET TL Q+F+QI GYR
Sbjct: 865 EKSAFVLGCVDETGTLKGHMKVIEDWKDVSSEKLPQIFLQIPDDVNGGYR---------- 914
Query: 645 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
++ G VV +NP LHPGD+RV++AV+VPAL H+ D VVFP G R + +M
Sbjct: 915 --------VITGTCVVGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLTGDRDVPSM 964
>gi|358393612|gb|EHK43013.1| hypothetical protein TRIATDRAFT_225118 [Trichoderma atroviride IMI
206040]
Length = 1272
Score = 278 bits (711), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 174/513 (33%), Positives = 274/513 (53%), Gaps = 55/513 (10%)
Query: 212 EHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVY 271
+H L+ L +E + P R+ M P PA + V + VTP+ +
Sbjct: 405 KHRLEVLVDQEEVVHNPMDIFA---RRTMA----PYRPATRIPHYCVLARKATVTPTSLL 457
Query: 272 FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRI 331
P + SNRVLR+F + D FLR+ F+DE S ++ + + I+ ++
Sbjct: 458 LSSPAVETSNRVLRYFNQAQDRFLRVQFVDE----AESGRMTMNSHN-----KEEIWKKL 508
Query: 332 LSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKY 391
L TL GI IGDR++EFLAF SSQLR+S A+ F ++ +IR+WMG IR VAKY
Sbjct: 509 LRTLYEGIQIGDRRYEFLAFGSSQLRQSGAYFFCPTDHISCQDIRQWMGQVSHIRIVAKY 568
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 451
AARLGQ FS+++E V + ++ I D++ + Y F+DG+G +S AR + + L
Sbjct: 569 AARLGQCFSTTREMKGVPIPDVRPIADIE----RNGYCFTDGVGMISGFMARMIVEELTL 624
Query: 452 KD-NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFL 509
+ N PSAFQ R GG KGV+ P + K ++ +R+S K++++ L+++ +KY L
Sbjct: 625 EVFNDPSAFQFRMGGCKGVLVVWPQAKKSEVYIRESQEKFKADAKNLEIIKCAKYTSATL 684
Query: 510 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELL 568
NRQ I++L LG+ + F + + + D A L + + ++T +L ELL
Sbjct: 685 NRQTITILEHLGVPKKAFMDILEKQISLYEEAAKDNRVAVGMLKKCVDENQSTLVLAELL 744
Query: 569 ICGYKPD--AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL------- 619
G+K EPF+ +L +R+ L L+ K RI I ++GC+DET TL
Sbjct: 745 QAGFKTKNCQEPFVVNLLNLWRSWSLKLLKEKARIAIEQSAFVLGCVDETGTLRGHSNAT 804
Query: 620 ---------NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 670
Q+F+Q+S +S ++ +++ +++G+ VV +NP LHPGD
Sbjct: 805 EGTSDKDVNKLPQIFLQVS---------DSKIYDTTK-----VIKGICVVGRNPSLHPGD 850
Query: 671 VRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
+RV++AV++P LHH+ D VVFP G R + ML
Sbjct: 851 IRVVEAVDIPELHHLKDVVVFPSTGDRPVPNML 883
>gi|340521639|gb|EGR51873.1| predicted protein [Trichoderma reesei QM6a]
Length = 1161
Score = 278 bits (711), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 167/458 (36%), Positives = 257/458 (56%), Gaps = 30/458 (6%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
V + VTP+ + P + SNRVLR+F D FLR+ F++E T+
Sbjct: 338 VLARKAAVTPTTILLSTPVVETSNRVLRYFNHIQDRFLRVQFVEE-------TEFGRMAM 390
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE 377
S + + ++ +IL TL GI IGDR ++FLAF SSQLR+ A+ F ++ +IR
Sbjct: 391 SCRN--KEDVWKKILRTLYQGIQIGDRHYQFLAFGSSQLRQCGAYFFCPTDHISCDDIRR 448
Query: 378 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 437
WMG IR VAKYAARLGQ FS+++E + + ++ IPDV+ + Y F+DG+G +
Sbjct: 449 WMGEVGHIRIVAKYAARLGQCFSTTREMRGLPIPDVRSIPDVE----RNGYCFTDGVGII 504
Query: 438 SAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTK 495
S A+ + + L PSAFQ R GG KGV+ P ++K ++ +R S K+++E+
Sbjct: 505 SDFMAQMIMEELTLDVYAEPSAFQFRMGGCKGVLVVWPQATKGEVCIRQSQEKFKAEVKN 564
Query: 496 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 555
L+++ +KY LNRQ I++L LG+ + F E +R + + K A+E++
Sbjct: 565 LEIIKCAKYSSATLNRQTITILECLGVTKKAFLDILEEQIRLYEEAMG---KNDVAIEML 621
Query: 556 S----PGENTNILKELLICGYKPD--AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
+ ++T IL ELL G+K D EPF++ +L +R+ L L+ K RI + +
Sbjct: 622 TNCVDENQSTLILAELLQAGFKTDKVQEPFVANLLSLWRSWSLKLLKEKARIPVDKSAFV 681
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF----SSSRSRQRFIVQGLVVVAKNPC 665
+GC+DET TL G F+ G+ + + +F S + +V+GL VV +NP
Sbjct: 682 LGCVDETSTLR-GH-FIATEGSSDKDISKLPQIFLQVSDSKIYNKTHVVKGLCVVGRNPS 739
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
LHPGD+RV++AV++P LHH+ D VVFP G R + ML
Sbjct: 740 LHPGDIRVVEAVDIPGLHHLKDVVVFPSTGDRPVPNML 777
>gi|255944161|ref|XP_002562848.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587583|emb|CAP85624.1| Pc20g02950 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1368
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 167/458 (36%), Positives = 261/458 (56%), Gaps = 28/458 (6%)
Query: 259 YVHRVQVTPSRVYFCGPEINVSNRVLRHF--RRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
++ ++TP+ +Y+ P +++SNRV+R + + FLR+ F DE + + S RG
Sbjct: 465 FMRTARITPTTIYYNTPTVDISNRVVREWSTKGTPGRFLRVRFTDEKTEG--RINASQRG 522
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
+ +YTR+ TL NGI IGDR +EFLAF +SQ RE A+ A G++A IR
Sbjct: 523 CN------DEVYTRVKRTLANGIAIGDRHYEFLAFGNSQFREHGAYFVAPDAGISAGTIR 576
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
WMG F IRNVAKY ARLGQ FS+++ + ++ IP +I + + FSDG+GK
Sbjct: 577 AWMGQFNHIRNVAKYTARLGQCFSTTR---AFTGSSVQTIP--CDDIIRNGFTFSDGVGK 631
Query: 437 VSAEFARKVASKCGLK---DNPPSAFQIRYGGYKG--VVAADPTSSKKLSLRDSMRKYES 491
+S A+ V S+ +K PPSAFQ R GG KG VV+ DP +++ +R S +K+E+
Sbjct: 632 ISKFLAQMVTSQHDIKTLTGEPPSAFQFRLGGAKGMLVVSTDPL-PQEVHIRPSQQKFET 690
Query: 492 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 551
L+++ WS+Y LNRQ+I +LS LGI DE+F K + + + KA
Sbjct: 691 SQAGLEIIRWSQYSLATLNRQIILVLSALGIPDEVFHSKLNTMLGSFHRAMLNDSKAINL 750
Query: 552 LE-LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
L+ + P + T L +++ G++ + EPF++ ML+ +++ L L+ K +I I G +++
Sbjct: 751 LQKYIDPNQMTLTLAQMVSDGFRRNEEPFVNTMLELWKSWHLKHLKEKAKIAIDQGANVL 810
Query: 611 GCLDETRTL-NYGQVFVQISGAGY-RQLHGESSLFSS----SRSRQRFIVQGLVVVAKNP 664
G +DET L Y + + A Y +L +F + +++GL ++A+NP
Sbjct: 811 GVMDETGVLKGYFRKELPSRRASYAEKLAALPEIFVQVCRLDGGGEYEVIEGLCILARNP 870
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
LHPGD+RV++AVN LH + D VV PQ G + I +M
Sbjct: 871 SLHPGDIRVVRAVNRSELHALRDVVVLPQTGDQDIASM 908
>gi|18656898|gb|AAL78034.1|AF468822_2 putative RNA-dependent RNA polymerase RDP-1 [Diaporthe perjuncta]
Length = 1484
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 158/454 (34%), Positives = 256/454 (56%), Gaps = 23/454 (5%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSS 318
V R +TP+ +YF P + ++NR+LR + D FLR+ F DE KI S+ S + +
Sbjct: 552 VRRAVITPTTIYFKTPCVELTNRILRKYSDLNDRFLRVQFTDEVTFGKIFSSQDSNKDDN 611
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
+YTR+ ++NG++IGDR ++FLAFS+SQ RE+ A+ F +T A IR W
Sbjct: 612 --------LYTRVHRVMQNGVIIGDRHYKFLAFSNSQFRENGAFFFCETDHVTCASIRNW 663
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
MG+FR IR+V K+AAR+GQ F+++++ + + +I I D++ G + F+DG+GK+S
Sbjct: 664 MGDFRHIRSVGKFAARMGQCFTTTRQVNGISIPKIRQIGDIQRRSGDNIWNFTDGVGKIS 723
Query: 439 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLD 497
FAR +AS+ L + PS FQ+R GG KGVV P + ++ +R S K+++ L+
Sbjct: 724 VFFARMIASERDLPET-PSCFQMRMGGCKGVVVVWPDIPANEVHIRPSQEKFKAVYNGLE 782
Query: 498 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 557
++ S + LN+Q+I +L LG+ D +F + + +++ D L D +KA E L
Sbjct: 783 IIKTSTFAHATLNKQVIPVLIALGVDDAVFVRMLDDELKEYDEALADSMKAGELLRSQVD 842
Query: 558 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 617
T + ++ + EPFL +L+ ++ L L+ K I + N + G +DET
Sbjct: 843 ENQTTLTMAEMVDTFMDSEEPFLWTLLRLWKCWVLKRLKQKFAISVKNSAMIFGVVDETG 902
Query: 618 TL-NYGQVFVQISGAGYRQLHGESSLF-------SSSRSRQRF-IVQGLVVVAKNPCLHP 668
L + Q G G+ + +F S +S + ++ G+ VV +NP LHP
Sbjct: 903 VLRGHSQ---DTEGKGFNNIESLPQIFLQVPIEGSDGKSTTNYEVITGICVVGRNPALHP 959
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
GDVRV++AV+VP L H+ + VVFP+ G R + +M
Sbjct: 960 GDVRVVEAVDVPELRHLKNVVVFPKTGDRDVPSM 993
>gi|378728086|gb|EHY54545.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1461
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 188/553 (33%), Positives = 299/553 (54%), Gaps = 47/553 (8%)
Query: 166 GIALPYEILFKINLLVQNGCVAGPLLDSNF-YRLVDPYRAPVSISCIEHALDKLYHL--- 221
I L +++ +++ + + G + +D F RL R + A L H+
Sbjct: 375 AIHLDFDLRYQLEVCISQGWLNEYTIDKEFLQRLTSLPR--------QRAKQMLIHVDSY 426
Query: 222 KECCYEPSRWLTD-QYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVS 280
+E Y+P D +Y K + +R+ P++ ++ VT S V F P + ++
Sbjct: 427 QERIYDPMTIFKDLRYSKPVRARALPTN--------CNEIYHATVTASGVLFHTPSVEIT 478
Query: 281 NRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS----ATDITRTRIYTRILSTLR 336
NR++R + R D FLR+ F D+ S RG S AT+ ++ R+ TL+
Sbjct: 479 NRIIRKYERYNDRFLRVRFEDD----------SYRGKSRLYPATNGRMRLLFERVRRTLK 528
Query: 337 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLG 396
+GI+I DR +EFLA+ +SQLRE A+ FAS + +T IR MG F + VAK AAR+G
Sbjct: 529 HGIIIADRHYEFLAWGNSQLREHGAYFFASTHDITPDTIRRSMGIFDSEKVVAKRAARMG 588
Query: 397 QSFSSSK--ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 454
Q FS+++ LS +I DV I + F+DG+GK+S A+ V S L+
Sbjct: 589 QCFSTTRAVSVLSKRAFHKRLIDDVII----NGHTFTDGVGKISMLGAQLVCSSLKLRGK 644
Query: 455 PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQL 513
PSA+Q R GG KGV+A DP + +R S K++SE +L+++ S++ FLNRQL
Sbjct: 645 VPSAYQFRLGGCKGVLALDPLLPGVDIKIRPSQYKFQSESDELEIIRVSEFWQPFLNRQL 704
Query: 514 ISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGY 572
I +LS LG+ DE+F +KQ + ++ LD + D A AL + + P T + ++ G+
Sbjct: 705 ILVLSDLGVPDEVFLQKQEDCIKALDRAMVDDTAALRALRDNVDPNLTTLSIAAMIEDGF 764
Query: 573 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 632
+ E F++ +L+ +RA L L+ K +I +P G ++G +DET L + FV G+
Sbjct: 765 RQSNEIFVTSLLRLYRAWTLKYLKEKAKIPVPQGAFVLGVVDETNKLRGHEPFVS-PGSE 823
Query: 633 YRQLHGESSLF---SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 689
L +F + + QR IV+G+ ++A+NP LH GD+RV+ AV++PALHH+ D V
Sbjct: 824 PPTLQDLPQIFMQYTDQHTGQRRIVEGVCIIARNPSLHRGDIRVVHAVDIPALHHLCDVV 883
Query: 690 VFPQKGMRYILTM 702
V P +G R + +M
Sbjct: 884 VMPIQGERDLPSM 896
>gi|391331492|ref|XP_003740179.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Metaseiulus
occidentalis]
Length = 1286
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 178/454 (39%), Positives = 257/454 (56%), Gaps = 36/454 (7%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
G VYV RV VTP+R+ +++ NR+LRHF D + +R+ F D++LDK+ + L+ R
Sbjct: 326 GTVYVRRVFVTPTRMILRFADLHTQNRILRHF--DSEYAIRVCFRDDNLDKLTFSVLNMR 383
Query: 316 GSSATDITRTRIYTRILST-LRNGILIGDRKFEFLAFSSSQLRESSAWMFA-SRYGLTAA 373
+ ++ +R+GI IGDRK+ ++A SSSQLR+ W +A G AA
Sbjct: 384 -------EKLPFLNHVVGDHIRSGITIGDRKYMYVAASSSQLRDHGVWFYALDPSGFDAA 436
Query: 374 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV------HMDEIEIIPDVKIEIGKTK 427
IR+WMG+F I NVA AR+GQ FSS++ET+ V H D+I P+ K
Sbjct: 437 SIRQWMGDFSNISNVATRMARMGQCFSSTQETVEVTPLEEVHEDDI-WYPEQVHPTSKKP 495
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSM 486
Y FSDG GK+S +V + PSA QIRY G KG+V DP+ ++L LR SM
Sbjct: 496 YCFSDGCGKISPSLLSEVWGSLPHTISQPSALQIRYRGCKGMVCLDPSLEGRQLVLRKSM 555
Query: 487 RKYESELT-KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL-DAILTD 544
K+E KL+V+ WS FLNR I++L G+ ++F + + E + Q+ D+++ +
Sbjct: 556 VKFECNSNRKLEVIKWSAPMNMFLNRPFIAILEHHGVKIDVFLRLELEMILQIADSLVCE 615
Query: 545 PLKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
AL +++ T I L G++ +PF + ML + L+ L+ K I I
Sbjct: 616 A----SALRVLTSFVKTPIPFYGLAETGWQLVQDPFFTQMLFDLLKTSLMSLKEKANIAI 671
Query: 604 P--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
P GR+M+G +DET L YGQVF+Q + S+ F S++R R +V VVV
Sbjct: 672 PVNEGRNMLGVVDETGLLEYGQVFIQFTEM-------PSAPFQISQARTR-VVDADVVVT 723
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
K PCLHPGDVR L+AV++P LHH+ DC+VFP KG
Sbjct: 724 KCPCLHPGDVRRLRAVDIPELHHVRDCIVFPAKG 757
>gi|408392756|gb|EKJ72076.1| hypothetical protein FPSE_07701 [Fusarium pseudograminearum CS3096]
Length = 1206
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 167/454 (36%), Positives = 248/454 (54%), Gaps = 25/454 (5%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V R +TP+ V + P I VSNRV+R FR D FLRI F +E + +
Sbjct: 397 VRRAVITPTTVRYSTPNIEVSNRVMRRFRHIQDRFLRIQFTEE---------MEKGKITV 447
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 379
IY RIL T+ GI IGDR +EFLAF +SQLR + A+ F ++ +IR+WM
Sbjct: 448 NKDQNDEIYKRILRTMYEGIRIGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWM 507
Query: 380 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 439
G F I+ VAKYAARLGQ FS++++ + IPDV+ + Y F+DG+GK+S
Sbjct: 508 GQFSHIKVVAKYAARLGQCFSTTRDVRGISSPNCLQIPDVE----RNGYCFTDGVGKISV 563
Query: 440 EFARKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKL 496
A+ V + PSAFQ R GG KGV+A P +K ++ +R+S +K+ES+ L
Sbjct: 564 FLAKLVGEDMAIDICADPSAFQFRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGL 623
Query: 497 DVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LM 555
+++ W++Y LN Q I +L LG+ F + +RQ + + D A E LE
Sbjct: 624 EIIRWARYATATLNLQTILILECLGVPIRSFTTLLDQQLRQYELAMRDNDVAIEMLERFR 683
Query: 556 SPGENTNILKELLICGYKPDA--EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 613
N + L +LL +K + EPF+ ++ +++ + L+ K RI +P ++GC+
Sbjct: 684 DEQHNHSCLADLLRADFKTETFQEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCV 743
Query: 614 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF----IVQGLVVVAKNPCLHPG 669
DET TL G F G+ + +H +F +++ I++G VV +NP LHPG
Sbjct: 744 DETGTLR-GHSF-DTEGSKEKDVHRLPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPG 801
Query: 670 DVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
D+RV++AV+ ALHH+ D VVFP G R + ML
Sbjct: 802 DIRVVEAVDCKALHHLTDVVVFPSTGDRPVPNML 835
>gi|46128677|ref|XP_388892.1| hypothetical protein FG08716.1 [Gibberella zeae PH-1]
Length = 1295
Score = 276 bits (705), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 166/454 (36%), Positives = 249/454 (54%), Gaps = 25/454 (5%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V R +TP+ V + P I VSNRV+R FR D FLRI F +E + +
Sbjct: 486 VRRAVITPTTVRYSTPNIEVSNRVMRRFRHIQDRFLRIQFTEE---------MEKGKITV 536
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 379
IY RIL T+ GI IGDR +EFLAF +SQLR + A+ F ++ +IR+WM
Sbjct: 537 NKDQNDEIYKRILRTMYEGIRIGDRLYEFLAFGNSQLRSNGAYFFCPTEYVSCDDIRQWM 596
Query: 380 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 439
G F I+ VAKYAARLGQ FS++++ + IPDV+ + Y F+DG+GK+S
Sbjct: 597 GQFSHIKVVAKYAARLGQCFSTTRDVRGISSPNCLQIPDVE----RNGYCFTDGVGKISV 652
Query: 440 EFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKL 496
A+ V + PSAFQ R GG KGV+A P +K ++ +R+S +K+ES+ L
Sbjct: 653 FLAKLVGEDMAIDICADPSAFQFRMGGCKGVLAVWPEDAKGTEVHVRESQKKFESDSKGL 712
Query: 497 DVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LM 555
+++ W++Y LN Q I +L LG+ + F + ++Q + + D A E LE
Sbjct: 713 EIIRWARYATATLNLQTILILECLGVPIKSFTTLLDQQLKQYELAMRDNDVAIEMLERFR 772
Query: 556 SPGENTNILKELLICGYKPDA--EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 613
N + L +LL +K + EPF+ ++ +++ + L+ K RI +P ++GC+
Sbjct: 773 DEQHNHSCLADLLRADFKTETFQEPFVVNVINLWQSWSIKSLKEKARIHVPKSAFVLGCV 832
Query: 614 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF----IVQGLVVVAKNPCLHPG 669
DET TL G F G+ + +H +F +++ I++G VV +NP LHPG
Sbjct: 833 DETGTLR-GHSF-DTEGSKEKDVHRLPQIFLQISDPKKYNKTSIIRGPCVVGRNPSLHPG 890
Query: 670 DVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
D+RV++AV+ ALHH+ D VVFP G R + ML
Sbjct: 891 DIRVVEAVDCKALHHLTDVVVFPSTGDRPVPNML 924
>gi|451852221|gb|EMD65516.1| hypothetical protein COCSADRAFT_354694 [Cochliobolus sativus
ND90Pr]
Length = 1365
Score = 275 bits (704), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 159/451 (35%), Positives = 261/451 (57%), Gaps = 25/451 (5%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 322
V +TP+ ++ P + SNR++R + D D F+R+ F DE + + R +
Sbjct: 484 VTITPTMMHVATPVMETSNRIIRKYEADADRFIRVRFTDEKSEGQLRNQPNGRAEA---- 539
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNF 382
++ R+ ++NGI++ R +EFLAF +SQ RE+ A+ +A +A +IR +G F
Sbjct: 540 ----VFDRVFRAMKNGIVVAGRYYEFLAFGNSQFRENGAYFYAPTASKSANDIRMSLGEF 595
Query: 383 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 442
IR V+K+AARLGQ FS+++ + V + ++ I+PDV+ + +VF+DG+GK+S A
Sbjct: 596 DHIRTVSKFAARLGQCFSTTR-AMGVTV-KLVIVPDVE----RNGFVFTDGVGKLSPFLA 649
Query: 443 RKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDV 498
+ A + GL + +PPS FQ R GG KGV+A DP + ++ +R S K+ + T L++
Sbjct: 650 QMAAQELGLTNAFTDPPSLFQFRLGGSKGVLALDPNLNGNEVHIRRSQYKFRAPHTGLEI 709
Query: 499 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSP 557
+ S + + NRQ+I +LS LG+ D +F +KQ + + + +TD + A + L + +
Sbjct: 710 IRSSSFATPYFNRQIILVLSYLGVQDAVFLRKQEDMMNDYSSAMTDEIIALQKLRKNIDI 769
Query: 558 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 617
+ T + +++ G+ EPF+ +L +RA + L+ K RI I NG ++GC+DET
Sbjct: 770 NQITLTMAAMVLDGFMGSREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETG 829
Query: 618 TLNYGQVFVQISGAGYR--QLHGESSLF---SSSRSRQRF-IVQGLVVVAKNPCLHPGDV 671
TL Q R +L +F S S+ + I++G+ ++A+NP LHPGDV
Sbjct: 830 TLKGHLNDPQSRRDATRDEKLATLPEIFLRVSDPESKGHYIIIEGICILARNPSLHPGDV 889
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
RV++AVNVPALHH+ + VVFPQ G R + M
Sbjct: 890 RVVRAVNVPALHHLKNVVVFPQTGDRDLANM 920
>gi|320586448|gb|EFW99118.1| RNA-directed RNA polymerase [Grosmannia clavigera kw1407]
Length = 2177
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 187/570 (32%), Positives = 294/570 (51%), Gaps = 56/570 (9%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
L +E+ +++ + + G + LD F + + +E+ ++ + Y+P
Sbjct: 1016 LSFEVSYQLEVCISRGILQEHSLDVVFLESLAALSPDRACRVLEYVAERDKRI----YQP 1071
Query: 229 SRWLTDQYRKYMTSRSKPSSPAISLD-DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 287
D S + + P +LD D VY+ + VTP+ + F P + NRVLRH+
Sbjct: 1072 HNIFRD---PKAASYWRKTPPEATLDKDRAVYIRKAIVTPTTIVFSTPALEAGNRVLRHY 1128
Query: 288 RRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRT-RIYTRILSTLRNGILIGDRKF 346
R D FLR+ F DE +H LS D TRT +TR L+NGI +G R F
Sbjct: 1129 REHHDRFLRVQFTDE----LHIGRLS----GGPDTTRTDECFTRAFRALKNGIRVGGRHF 1180
Query: 347 EFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 406
+FLAF +SQLRE+ A+ FA +T ++R+WMG+F I+ VAKYAARLGQ S+++
Sbjct: 1181 KFLAFGNSQLRENGAYFFAPTELVTCQDVRDWMGDFSNIKTVAKYAARLGQCLSTTRPVP 1240
Query: 407 SVHM-DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
+ + ++ IPDV+ + F+DG+GK+S +AR +AS + + PSAFQ R GG
Sbjct: 1241 TFGVPTTVQHIPDVE----GGGFCFTDGVGKISKWWARVIASHLRVSEV-PSAFQFRMGG 1295
Query: 466 YKG--VVAADPTSSKKLSLRDSMRKYES--ELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
KG VV D S + + +R S K+ + + L+++ S+ LN+Q I LL+ LG
Sbjct: 1296 CKGVLVVWPDVPSGQVVQVRPSQEKFPTSDKANVLEIVRCSETATATLNQQTILLLTCLG 1355
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNILKELLICGYKPDAEPFL 580
I +F + E + +DA++ D KA + L + + T+ L +++ G+ EPF+
Sbjct: 1356 IPTSVFLELLNEELTGIDAVMKDARKAVDQLMVRVDQNHTTHALADMVKAGFMDSDEPFV 1415
Query: 581 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL--------------------- 619
+LQ +R+ L L+ K RI + ++GC+DET TL
Sbjct: 1416 WALLQLWRSWTLKALKEKARITVERSAFVLGCVDETDTLRGHTNEPERPTNEDTRDKIDD 1475
Query: 620 ------NYGQVFVQISG-AGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 672
Q+F+Q+ SS+ + + ++ GL +V +NP LHPGD+R
Sbjct: 1476 KENKIARLPQIFLQVPDLDAVTAGQVRSSIDQDAGHGKYKVIVGLCLVGRNPSLHPGDLR 1535
Query: 673 VLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
V++AV+VPALHH+ D VVFP+ G R I M
Sbjct: 1536 VVEAVDVPALHHLRDVVVFPRVGDRDIPGM 1565
>gi|361125379|gb|EHK97425.1| putative RNA-dependent RNA polymerase 1 [Glarea lozoyensis 74030]
Length = 1213
Score = 274 bits (701), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 179/561 (31%), Positives = 288/561 (51%), Gaps = 63/561 (11%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
I+LP+E+ +++ + + + LD F + A S + L+ + + Y
Sbjct: 162 ISLPFEVRYQLEVCISRELLNEYNLDREFIEKLAEL-AKSDASTARNILEYVAENDKRIY 220
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGL----VYVHRVQVTPSRVYFCGPEINVSNR 282
EP + P + A S+ + Y + +TPS + F P + +NR
Sbjct: 221 EPLHLF-----------NSPEALAFSVKTDIPHYCAYSRKATITPSTILFSSPTVETTNR 269
Query: 283 VLRHFRRDIDN--FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGIL 340
VLRH+ R+ + FLR+ F DE + + +S I+TR+ TL NGI
Sbjct: 270 VLRHYSRENHDGRFLRVQFTDESFEG--------KINSCVKQRNDEIFTRVYRTLANGIR 321
Query: 341 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 400
IGDR ++FLAF +SQ RE+ A+ F LT +IR+WMGNF I AKYAARLGQ FS
Sbjct: 322 IGDRHYKFLAFGNSQFRENGAYFFCEDEHLTCNDIRDWMGNFTHINVPAKYAARLGQCFS 381
Query: 401 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-DNPPSAF 459
+++ + I IPD IE G KY +SDG+GK+S A+ + ++ GL + PSAF
Sbjct: 382 TTRAINGLSAPTIVTIPD--IEHG--KYTYSDGVGKISPFLAQMITAELGLHVAHEPSAF 437
Query: 460 QIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLS 518
Q R GG KG++ P + +++ +R S +K+ + L+++ S+Y LNRQ I+LLS
Sbjct: 438 QFRLGGCKGILVTWPDAKDREVHIRKSQQKFTAVYNGLEIIRCSQYSCATLNRQTITLLS 497
Query: 519 TLGIWDEIFEKKQREAVRQL-DAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 577
LG+ D +F K +E + +A+ D L + + T + +++ K +
Sbjct: 498 NLGVGDGVFLKMMKEQLSGYQNAMENDNLAIELLCRFIDDNRMTINIAKMISSDIK---D 554
Query: 578 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL----------------NY 621
PF+S +L +R+ + L+ K +I + G + GC+DET TL
Sbjct: 555 PFVSSLLHLWRSWSIKLLKEKAKIVVEKGAFVFGCVDETHTLRGYKAPSTEGDAIPEEQL 614
Query: 622 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
Q+F+Q+ +HG ++ +++G+ +V +NP LHPGD+R+ +A++VPA
Sbjct: 615 PQIFIQVP------VHG-----CDPKNPVYNVIEGICLVGRNPSLHPGDLRICQAIDVPA 663
Query: 682 LHHMVDCVVFPQKGMRYILTM 702
LHH+ D VVFP G R + +M
Sbjct: 664 LHHLRDVVVFPSCGDRDVPSM 684
>gi|239614149|gb|EEQ91136.1| RNA-directed RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1701
Score = 274 bits (700), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 177/544 (32%), Positives = 289/544 (53%), Gaps = 66/544 (12%)
Query: 161 VGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH-ALDKLY 219
+G + I LP+ + +++ + + + + ++ F R + + +EH A++K
Sbjct: 802 LGEDEYIPLPFSVRYQLEVCMSHRYINEYTIEETFVRRLVQLGEKKAKELLEHVAMNKTI 861
Query: 220 HLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINV 279
+ Y+P + K T+ P Y+ VTPS + + P ++
Sbjct: 862 Y-----YDPMEIFNIPFPKGATNGRIPGH--------CCYIRSADVTPSTICYDIPSVDT 908
Query: 280 SNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 338
SNRV R+ R D FLR+ F DE + KI+ + S ++Y R+L TL++G
Sbjct: 909 SNRVFRYHREHADRFLRVRFCDEKYIGKIYPNN------SGNSQCMEKVYARVLRTLQHG 962
Query: 339 ILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQS 398
I IGDR++EFLAF +SQLRE A+ FAS LTAA IR MG+ IR VAKYAARLGQ
Sbjct: 963 ITIGDRRYEFLAFGNSQLREHGAYFFASLPHLTAANIRAQMGDLNNIRVVAKYAARLGQC 1022
Query: 399 FSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---DNP 455
FS+++ S + +I+ I D++ + YVFSDG+G++S + + S G+K P
Sbjct: 1023 FSTTRAVTSCPV-QIKKIDDIE----RNGYVFSDGVGRLSHFLTQMIQSDLGIKTPSGEP 1077
Query: 456 PSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 514
PS FQ R GG KG++A P + +++ +R S K+ + L+++ +S + LNRQLI
Sbjct: 1078 PSVFQFRLGGCKGILAVSPEARQREVHIRRSQFKFPASHNGLEIIRYSHFSYATLNRQLI 1137
Query: 515 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGYK 573
+LS LG DE+F K + L+ +TD KA L+ + P + T +L +++ G++
Sbjct: 1138 LILSALGTPDEVFIAKLSMMLANLEQAMTDEDKAVSLLQKYVDPNQMTLVLADMIRDGFQ 1197
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN------------- 620
EPF+S +L+ +R ++ L+ K +I I G ++GC+DET+TL
Sbjct: 1198 GSREPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETKTLKGYFRSARPKANST 1257
Query: 621 -------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 673
++FVQ+ +R G+ + +++GL ++A+NP LHPGD+RV
Sbjct: 1258 YQERVDCLPEIFVQV----WRHSEGKYA-----------VIEGLCILARNPSLHPGDIRV 1302
Query: 674 LKAV 677
+KA+
Sbjct: 1303 VKAI 1306
>gi|380480880|emb|CCF42174.1| RNA dependent RNA polymerase [Colletotrichum higginsianum]
Length = 1271
Score = 273 bits (699), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 160/463 (34%), Positives = 256/463 (55%), Gaps = 25/463 (5%)
Query: 249 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 308
P S+ + +V VTPS ++FC P + SNRVLR + D F+R+ F DE
Sbjct: 433 PNASMPYYCTTIRKVIVTPSTMHFCSPSVEASNRVLRKYSSHQDRFIRVQFTDELY---- 488
Query: 309 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 368
+G D ++ RI L+ GI IG+R +EFLAF +SQ+RE + + F
Sbjct: 489 ------KGKIYNDAG-DEVFDRIYRALKRGIKIGNRIYEFLAFGNSQIRECAVYFFCPTD 541
Query: 369 GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 428
+T +IR+WMG F I+NVAKYAAR+GQ FS+++E + + IE D++ + +Y
Sbjct: 542 YVTCDDIRKWMGEFNHIKNVAKYAARIGQCFSTTREIRGITVPRIEQAKDIQ----RGEY 597
Query: 429 VFSDGIGKVSAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSM 486
FSDG+GK+S A V ++ G + PSAFQ R GG KG++A P + ++ +R S
Sbjct: 598 CFSDGVGKISKLLAEMVVNEMGQEAVGIPSAFQFRMGGCKGMLAVWPDAKGLEVHIRPSQ 657
Query: 487 RKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
K++++ L+++ ++Y LNRQ I++L+TLG+ E K ++ ++ + + D +
Sbjct: 658 EKFKAQFNGLEIIKSAQYSVATLNRQTITILTTLGVKSEPILKLAKQQIQNYEKAMDDQV 717
Query: 547 KAQEAL-ELMSPGENTNILKELLICGY--KPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
A L + + + +K+L+ G+ K EPF+ +L +R + L+ K R+ I
Sbjct: 718 AATGLLGKYIDENMTSLTIKDLVCWGFMDKEVQEPFVLTILNLWRIWSMKLLKEKARVII 777
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF---SSSRSRQRFIVQGLVVV 660
++GCLDET L + G R +H +F +S + + V G+ +V
Sbjct: 778 EQSAFLLGCLDETGILRGHSKATE--GKTTRNIHDLPQIFLQIPNSEDGKHYCVTGVCIV 835
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
+NP LHPGD+RV++AV+VP LHH+ + VVFP G R + +ML
Sbjct: 836 GRNPSLHPGDIRVVEAVDVPTLHHLKNVVVFPSIGDRDVPSML 878
>gi|384245028|gb|EIE18524.1| RdRP-domain-containing protein, partial [Coccomyxa subellipsoidea
C-169]
Length = 723
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 167/438 (38%), Positives = 251/438 (57%), Gaps = 46/438 (10%)
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT-RILST 334
++ +SNRV+RH R+ D FLR++F +E+ ++ A DI R Y R+
Sbjct: 1 QVELSNRVIRHHRQYSDRFLRVTFCEENGGRL---------CFANDIPRLEDYMDRMEGI 51
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-RYGLTAAEIREWMGNFREIRNVAKYAA 393
L++G+ + DR F+ LAFSS Q+RE SAW +A+ G TAA+IR WMG+F IR VAK+ A
Sbjct: 52 LKDGLELADRHFDLLAFSSGQVREQSAWFWAAPDSGPTAADIRAWMGDFDAIRCVAKFTA 111
Query: 394 RLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC-GLK 452
R+GQ FSS+ +TL + ++ +PDV+ + Y FSDG+G++S E +R VA + L
Sbjct: 112 RMGQCFSSTVDTLKLQAYTVQTVPDVE----RNGYCFSDGVGRISVELSRAVADRLEQLG 167
Query: 453 DNP----PSAFQIRYGGYKGVVAAD-PTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPC 507
P P A+QIRY G KG+V+ K+ +R SM K+E+ L++ +++Y P
Sbjct: 168 RCPAGWLPRAYQIRYAGCKGMVSLHMGLRGKRFEVRPSMNKFEASAQMLEICDYARYVPG 227
Query: 508 FLNRQLISLL--STLGIWDEIFEKKQ-REAVRQLDAILTDPLKAQEALELMSPGENTNIL 564
+LNRQ+++LL LG+ + +F++ Q R A+ L+ + L+ L L+ G+ +L
Sbjct: 228 YLNRQIVTLLMQKCLGVPNSVFQRLQARTALFNLNK--SGQLRC-FCLNLIKWGDAAIML 284
Query: 565 K--ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 622
+ ++ G+ EP+L +L RA L +L+ KTR+ +P +MG +DE L G
Sbjct: 285 EAAHIIRAGFDVGTEPYLKSILLCLRAHLLQDLKAKTRVRVPKAALLMGVMDEEGVLEPG 344
Query: 623 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA---VNV 679
QVF+ ++ L IV G VVVAKNPC HPGDVR +A
Sbjct: 345 QVFLSVNSLPTMALPA--------------IVTGTVVVAKNPCFHPGDVRKFQARPLFRS 390
Query: 680 PALHHMVDCVVFPQKGMR 697
P LHH+V+C+VFPQKG R
Sbjct: 391 PELHHLVNCLVFPQKGQR 408
>gi|367042188|ref|XP_003651474.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
gi|346998736|gb|AEO65138.1| hypothetical protein THITE_2048877 [Thielavia terrestris NRRL 8126]
Length = 1511
Score = 272 bits (695), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 184/571 (32%), Positives = 298/571 (52%), Gaps = 47/571 (8%)
Query: 146 ETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFY-RLVD--PY 202
ET S ++ L L+ P I+LP+++ +++ + + + + + +F +L++ P
Sbjct: 404 ETASPWNNDLALL---SPTGKISLPFDVRYQLEVCISHEILCEYNIQRDFLEKLLELGPN 460
Query: 203 RAPVSISCIEHALDKLYHLKECCYEPSRWLTD--QYRKYMTSRSKPSSPAISLDDGLVYV 260
RA + +E+A DK E Y P L D Y T+ + + D V
Sbjct: 461 RARL---ILEYAADK----GETIYNPLELLKDPGALTYYPTT--------LHIPDYCALV 505
Query: 261 HRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSSA 319
+V VTP+R+YF P + +NR++R +++ D+F+R+ F DE L+ +I + ++
Sbjct: 506 RKVIVTPTRIYFNTPTVETTNRIVRRYKQVQDHFIRVQFTDELLEGRIRACEVD------ 559
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG---LTAAEIR 376
+YTR+ + GI +G ++FLAF +SQ+RE+ A+ F G +T IR
Sbjct: 560 ---RDDELYTRVYRVMMQGIRMGRWHWKFLAFGNSQIRENGAFFFCQAEGYPDITCDTIR 616
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
+WMGNF I VAK AARLGQ FS+++ + I IPDV+ K + F+DG+GK
Sbjct: 617 QWMGNFSHISTVAKLAARLGQCFSTTRLLRCISSPWIVKIPDVE----KGGFCFTDGVGK 672
Query: 437 VSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTK 495
+S A V+ + PPSAFQ R GG KGV+ P + ++ +R S K+ +E
Sbjct: 673 ISMVLASLVSQDWKIY-PPPSAFQFRMGGCKGVLVTWPDAKGMEVHIRPSQEKFSAEYNG 731
Query: 496 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-L 554
L+++ S++ LNRQ I +LS LG+ D++F E + DA +TD KA E L
Sbjct: 732 LEIIRCSQFSCATLNRQTILILSCLGVPDDVFTSMMDEQISNYDAAMTDKDKAVELLSSY 791
Query: 555 MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 614
+ + + +++ G+ EPF+ +LQ +R+ + L+ K R+ + G ++GC+D
Sbjct: 792 VDENMTSTTIARMVLNGFMHTQEPFVRTLLQLWRSWSIKGLKEKARLIVDQGAFVLGCVD 851
Query: 615 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF---IVQGLVVVAKNPCLHPGDV 671
ET +L G Q H R R ++ GL +V +NP LHPGD+
Sbjct: 852 ETGSLR-GHSKATEGRKKIAQHHLPQIFLQVPDPRDRGAYKVITGLCLVGRNPSLHPGDI 910
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
RV++AV++P L H+ D VVFP G R I +M
Sbjct: 911 RVVEAVDLPQLRHLRDVVVFPLSGDRDIPSM 941
>gi|336264581|ref|XP_003347067.1| hypothetical protein SMAC_05269 [Sordaria macrospora k-hell]
gi|380093080|emb|CCC09317.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1703
Score = 272 bits (695), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 182/579 (31%), Positives = 305/579 (52%), Gaps = 44/579 (7%)
Query: 140 EDRF--VLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFY- 196
+DR+ ++ S+ S + D + PP I+LP+++ +++ + + G + +D F
Sbjct: 414 DDRYGHAIQPASSQSWNNDFSLLAAPPR-ISLPFDVRYQLEVCISQGIINEHNIDRPFLE 472
Query: 197 RLVDPYRAPVSIS------CIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPA 250
+L + S++ +E+A D+ + + ++P D R PS+
Sbjct: 473 KLTEFCNDDNSLNKDRARLILEYAADE--YAGKRIFDPMGLFKDS----AAMRYFPST-- 524
Query: 251 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 310
+ + V RV +TP+R+YF P + +NRV+R +R D F+RI F DE L+
Sbjct: 525 FIIPNYCALVRRVTITPTRIYFSTPYVEPTNRVIRQWRFAQDYFIRIQFTDEVLE----- 579
Query: 311 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 370
G + ++ R L+ GI +G ++FLAF +SQ+RE+ A+MF + L
Sbjct: 580 -----GRIRSGEAELPLFLRAYRVLQEGIAMGLWHWKFLAFGNSQIREAGAYMFCEQSDL 634
Query: 371 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
T +R WMG F I+ +AKYAARLGQ FS+++ + I IPDV+ K + F
Sbjct: 635 TCDMMRSWMGRFSHIKVIAKYAARLGQCFSTTRLVPGIPAPRIVTIPDVE----KDGFCF 690
Query: 431 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKY 489
+DG+GK+S A+ + + L D PSAFQ R GG KGV+ P ++ +R S K+
Sbjct: 691 TDGVGKISPLLAKIITHEWSL-DRLPSAFQFRMGGCKGVLVTWPDVKGMEVHIRKSQEKF 749
Query: 490 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 549
+E L+V+ S + LNRQ I++LS+LG+ D++F + + +A + D KA
Sbjct: 750 VAEFNGLEVIKCSAFATATLNRQTIAVLSSLGVPDQVFVDMMEKQLSDYNAAMVDKRKAT 809
Query: 550 EAL-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 608
E L + + T I+ ++L G+ EPF+ +LQ +R+ + L+ K R+ +
Sbjct: 810 EYLRKYVDENHITPIIAQMLSYGFMESQEPFVRTLLQLWRSWSIKTLKEKARLSVEKSAF 869
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGES--SLF---SSSRSRQRFIVQGLVVVAKN 663
++GC+DE+RTL ++ G++ + E +F + + ++ G VV +N
Sbjct: 870 VLGCVDESRTLKGHMKVIE----GWKDVPSEKLPQIFLQIPDNVNDGYKVITGTCVVGRN 925
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
P LHPGD+RV++AV+VPAL H+ D VVFP G R + +M
Sbjct: 926 PSLHPGDIRVVEAVDVPALRHIRDVVVFPLTGDRDVPSM 964
>gi|391332207|ref|XP_003740528.1| PREDICTED: RNA-dependent RNA polymerase 2-like [Metaseiulus
occidentalis]
Length = 1437
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 174/469 (37%), Positives = 267/469 (56%), Gaps = 44/469 (9%)
Query: 245 KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 304
+PS S G Y+ R+ +TP+R F PE++ NR+LR+F + D +R+ F D++L
Sbjct: 396 EPSDEEHSHIPGTAYIRRIFITPTRKIFRFPELHTQNRILRNF--EPDYAIRVCFRDDNL 453
Query: 305 DKIHSTDLSPRGSSATDITRTRIYTRILS-TLRNGILIGDRKFEFLAFSSSQLRESSAWM 363
+K+ + + T+ ++ L G+ IG R+++F+A SSSQLR+ W+
Sbjct: 454 EKLTFAIFNMK-------TKESFLKEVVGRHLCEGLKIGSRRYDFVAASSSQLRDHGVWV 506
Query: 364 FA-SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV------HMDEIEII 416
+A ++G A IR WMG+F +I NVA AR+GQ FSS++ET+ + H +I
Sbjct: 507 YARDQFGFEAETIRGWMGDFHDINNVATRMARMGQCFSSTQETVEILPEEELHWRDITHF 566
Query: 417 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP----PSAFQIRYGGYKGVVAA 472
V G+ Y FSDG GK+S E ++V C L + PSA QIRY G KG+++
Sbjct: 567 ESVHPLSGR-PYCFSDGCGKISQELMQQVW--CTLPHHAMELHPSALQIRYRGCKGMISL 623
Query: 473 DPT-SSKKLSLRDSMRKYE-SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKK 530
D T +KL LR+SM K++ + KL+V+ WS FLNR LI++L GI ++F +
Sbjct: 624 DTTLPGRKLVLRESMIKFQCTSPRKLEVIKWSAPMNMFLNRSLIAILEHHGIRTDVFLRL 683
Query: 531 QREAVRQL-DAILTDPLKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFR 588
Q E + Q+ D+++ + AL +++ T + L G++ +PF+ ML
Sbjct: 684 QLEMIMQVADSLVCEA----SALRVLTSFVKTPVPFAGLAEVGWELVRDPFIIQMLYDLL 739
Query: 589 ASKLLELRTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSS 646
+ L+ L+ K + IP GR+M+G +DET L+YGQVF+Q + Y + S++
Sbjct: 740 KNALVNLKVKANVAIPVNEGRNMLGVVDETGILDYGQVFIQFTEMPYTDV-------SNA 792
Query: 647 RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
R R IV+G VV+ K PC+HPGDVR L+AV+VP L H+ DCVVFP +G
Sbjct: 793 RVR---IVEGDVVITKCPCMHPGDVRRLRAVDVPQLRHIRDCVVFPSRG 838
>gi|345566166|gb|EGX49112.1| hypothetical protein AOL_s00079g66 [Arthrobotrys oligospora ATCC
24927]
Length = 1475
Score = 268 bits (686), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 181/565 (32%), Positives = 290/565 (51%), Gaps = 62/565 (10%)
Query: 168 ALPYEILFKINLLVQNGCVAGPLLDSNFYR---LVDPYRAPVSISCIEHALD--KLYH-- 220
+L Y + +++ + GCV+ + F ++ +++ +E +D K Y+
Sbjct: 525 SLTYPLRYQLEACISQGCVSEYNVSKEFIDELIAIEEREPNLAVRILETVVDSGKRYYDP 584
Query: 221 LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVS 280
++ +P R T Q KY V + +TP+ +Y+ P + S
Sbjct: 585 MEILDIKPERRSTAQIPKY-----------------CVETRKATITPTMIYYANPVVETS 627
Query: 281 NRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGI 339
RV+RHF D FLR+ F DE L KI +T+L T ++TR+ L NGI
Sbjct: 628 YRVIRHFFNHKDRFLRVQFTDEKLHGKISATELD---------TSHELFTRVSKALNNGI 678
Query: 340 LIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSF 399
IGDR F+FLAF +SQLR+ A+ FA LT +IR+WMG F +I+ VAK++AR GQ F
Sbjct: 679 KIGDRHFQFLAFGNSQLRQHGAYFFADGPDLTCDDIRKWMGKFEKIKVVAKFSARYGQCF 738
Query: 400 SSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL-KDNP-PS 457
S+++ + +I IPDV+ + + F+DG G +S+ A+ +A++ + +++P P
Sbjct: 739 STTRAMNGFKVKDI-TIPDVE----RNGFCFTDGCGTISSSAAQLIAAEYRIPRESPLPC 793
Query: 458 AFQIRYGGYKGVVAADPTSSK--------KLSLRDSMRKYESELTKLDVLAWSKYQPCFL 509
AFQ R GG KGV+ DP K ++ +R S RK++++ L+++ +S + L
Sbjct: 794 AFQFRLGGCKGVLVVDPNIKKVETGEAGFQVCIRPSQRKFDADHNSLEIIRYSDFSVATL 853
Query: 510 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELL 568
NRQLI +LS LG+ D +F K +R L+ + D A++ L + + T + LL
Sbjct: 854 NRQLIQVLSDLGLEDTVFLDKLHSQLRDLNLAMEDKEAARKILMKNVDANGGTIQIAGLL 913
Query: 569 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 628
G+ EPF+ +L +RA + L+ K RI I NG ++G +DET L G +
Sbjct: 914 SDGFMTSQEPFVQCLLHLWRAWSIKMLKEKARITIENGCFLLGVVDETGILK-GHFDKEH 972
Query: 629 SGAGYRQLHGES-----------SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 677
+ +GE+ + I+QG ++A+NP LHPGD+RV+ AV
Sbjct: 973 EELKKSRANGEALRCDLLPEIFVQIPDYENKGHYKIIQGPCLLARNPSLHPGDLRVVNAV 1032
Query: 678 NVPALHHMVDCVVFPQKGMRYILTM 702
+ P L H+ + VVFPQ G + I M
Sbjct: 1033 DCPDLRHLRNVVVFPQTGDKPIANM 1057
>gi|302420105|ref|XP_003007883.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261353534|gb|EEY15962.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1465
Score = 268 bits (686), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 163/466 (34%), Positives = 253/466 (54%), Gaps = 47/466 (10%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V +V VTP+ +Y P + SNRV+R ++ D FLR+ F DE + +S R
Sbjct: 490 VRKVVVTPTTIYLSSPGVEASNRVIRKYQHVSDRFLRVQFTDE----LTRGRISTRAKME 545
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 379
D ++ R+ T+ NGI IGDR ++FLAF +SQ+RE A+ F L E+R+WM
Sbjct: 546 LD---HYVFKRVYLTMINGIRIGDRHYKFLAFGNSQIRECGAYFFCETVHLKCTEMRQWM 602
Query: 380 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 439
GNF I VAK+AARLGQ FS+++E S+ I+IIPD++ + + F+DG+GK+S+
Sbjct: 603 GNFNHIHIVAKFAARLGQCFSTTREIRSIRAPNIQIIPDIE----RNGHCFTDGVGKISS 658
Query: 440 EFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLD 497
A V + GL+ PSAFQ R GG KGV+A P + + +R S K+++ L+
Sbjct: 659 FLASMVLEEMGLETVETPSAFQFRMGGCKGVLAVWPEAKGMYVHIRKSQEKFKATFNGLE 718
Query: 498 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 557
++ +++ LNRQ I++L++LGI E+F + + + + D A L
Sbjct: 719 IIRCARFSAATLNRQTITILTSLGIKSEVFMDLLQRQLHSYEKAMNDQGAAAVLLGRHID 778
Query: 558 GENTNI-LKELLICGY-KPDA-EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 614
+T++ L++L+ G+ + D EPF+ +LQ +R + LR K RI + G ++GC+D
Sbjct: 779 ENHTSLALRDLINWGFMRHDVQEPFVLTILQLWRVWSMKLLRDKARIVVDKGAFVLGCVD 838
Query: 615 ETRTLN-----------------YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 657
ET TL Q+F+QI R +++G+
Sbjct: 839 ETATLRGHNRASEGQTTSRNVELLPQIFLQIPDPDDRHFFN--------------VIKGV 884
Query: 658 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
+V +NP LHPGD+RV++AV+VP L HM + VVFP G + +ML
Sbjct: 885 CIVGRNPSLHPGDIRVVEAVDVPQLRHMKNVVVFPSTGDVDVPSML 930
>gi|189202022|ref|XP_001937347.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187984446|gb|EDU49934.1| RNA-directed RNA polymerase Rdp1 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1604
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 153/452 (33%), Positives = 260/452 (57%), Gaps = 27/452 (5%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATD 321
V +TP+ ++ P + SNR++R + D D F+R+ F DE + ++ S P G S
Sbjct: 653 VVITPTMMHVASPVMETSNRIIRKYAADSDRFIRVKFSDEKTEGQLRSM---PNGKSGA- 708
Query: 322 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGN 381
++ R+ +R+GI++ R ++FLAF +SQ RE A+ FA ++A +IR +G+
Sbjct: 709 -----VFDRVRRAMRHGIVVAGRYYDFLAFGNSQFREHGAYFFAPTSSMSANDIRLSLGD 763
Query: 382 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF 441
F ++ VAK+ ARLGQ FS+++ +S + I+ IP EI + Y F+DG+GK+S
Sbjct: 764 FTNVKTVAKFGARLGQCFSTTR-AMSQKV-SIKPIP----EIMRNGYTFTDGVGKLSPFV 817
Query: 442 ARKVASKCGLK---DNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLD 497
A+ A + GL D+PPS FQ R GG KGV+A DPT + ++ +R S +K++++ L+
Sbjct: 818 AKMAAEELGLSNAFDDPPSLFQFRLGGCKGVLALDPTITGTEVHIRPSQQKFQAKFMGLE 877
Query: 498 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA-QEALELMS 556
++ S + F NRQ+I +LS LG+ D + KKQ+E V + +TD A Q+ + +
Sbjct: 878 IIRSSAFATPFFNRQIIVVLSHLGVPDHVIIKKQQEMVNDYETAMTDESVAIQKLRKHID 937
Query: 557 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 616
+ T + +++ G+ +PF+ +L+ +RA + L+ K RI I +G ++GC+DET
Sbjct: 938 MNQTTLAMAAMVLDGFMKVQDPFMMSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDET 997
Query: 617 RTL--NYGQVFVQISGAGYRQLHGESSLF----SSSRSRQRFIVQGLVVVAKNPCLHPGD 670
L + ++ +L +F +++ I++G+ ++A+NP LHPGD
Sbjct: 998 AKLKGHMNDPQSRLDATRDEKLATLPEIFLQVDDTNKKGHYKIIEGVCILARNPSLHPGD 1057
Query: 671 VRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
+RV++AVN+P L H+ + VV PQ G R + M
Sbjct: 1058 LRVVRAVNIPELQHLKNVVVLPQTGDRDLANM 1089
>gi|449301850|gb|EMC97859.1| hypothetical protein BAUCODRAFT_67567, partial [Baudoinia
compniacensis UAMH 10762]
Length = 1035
Score = 266 bits (679), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 256/456 (56%), Gaps = 39/456 (8%)
Query: 265 VTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR 324
+TP+ + P + +NR++R + +D+FLR+ F DE + + +D +
Sbjct: 291 ITPTSLIISTPVVETTNRIIRKYEHIVDHFLRVKFTDERY--------KGKVMNNSDNNQ 342
Query: 325 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 384
I+TR+ TL+NGI I R ++FLAF +SQ RE+ A+ FAS L+AA+IR MG F
Sbjct: 343 DEIFTRVKRTLQNGIQIAGRHYDFLAFGNSQFRENGAYFFASTPDLSAADIRVAMGTFTH 402
Query: 385 IRNVAKYAARLGQSFSSSKE-TLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 443
I VAKYA+RLGQ FS+++ + V +D + +I + Y F+DG+GKVS A+
Sbjct: 403 ITTVAKYASRLGQCFSTTRGLSYRVRVDALA-------DITRNGYTFTDGVGKVSPFIAQ 455
Query: 444 KVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYESELTKL 496
VA G + + PS Q R GGYKGV+A DPT + K + R S K+ + L
Sbjct: 456 MVAQTFGFPNAFVDYPSVIQFRLGGYKGVLAVDPTLTGKDNMVIQTRPSQMKFPAVYHGL 515
Query: 497 DVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELM 555
++ S++ +LN+Q+I +LS G+ D++F K ++A++ L + D KA++ L + +
Sbjct: 516 EICRLSQFTAAYLNQQIILVLSARGVEDKVFVVKVQQALKDLQDAMIDEDKAKDQLCKKI 575
Query: 556 SPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 615
T +L +++ G+ +PF+ ++ +R+ + L+ K RIF+ G ++GC DE
Sbjct: 576 DYNHTTLVLAQMIDDGFMAVRDPFMMSCMRLWRSWMVKYLKEKARIFVDEGAFVLGCTDE 635
Query: 616 TRTL----NYGQVFVQISGAG-----YRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
T TL N V ++ A + Q+ ++ V+G+ ++A+NP L
Sbjct: 636 TTTLRGDFNADNHTVDLTDATPLPEIFLQIP------DVAKKGSYVAVKGVCLLARNPSL 689
Query: 667 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
HPGD+RV++A++VPALHH+ +CVV PQ G R + M
Sbjct: 690 HPGDIRVVRAIDVPALHHLKNCVVLPQTGDRDLANM 725
>gi|322701339|gb|EFY93089.1| suppressor of ascus dominance [Metarhizium acridum CQMa 102]
Length = 1296
Score = 265 bits (677), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 168/551 (30%), Positives = 287/551 (52%), Gaps = 38/551 (6%)
Query: 164 PDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKE 223
P I LP+E+ +++ + + G + + +F + ++ R + +E+ +D+ E
Sbjct: 331 PQKIHLPFEVRYQLEVCISRGVLNEYTIGIDFLQELNNLRTMDATHRLEYLVDQ----NE 386
Query: 224 CCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRV 283
++P + + + PA + YV + +TP+ + F P + SNRV
Sbjct: 387 ILFDP-------MKLFSMEDATAFVPAARIPHYCTYVRKASITPTTIRFNSPTVETSNRV 439
Query: 284 LRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGD 343
+R + D FLR+ F++E ++L G T +++ R+ L GI IGD
Sbjct: 440 VRKYSHVQDRFLRVQFVEE-------SELVRLGK--TKYNNVKVWKRVERALSQGIRIGD 490
Query: 344 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 403
R++EFLAF SSQLR+SSA+ F L+ +IR WMG F I+ VAKYAARLGQ FS+++
Sbjct: 491 RQYEFLAFGSSQLRQSSAYFFCPTDHLSCEDIRAWMGQFDHIKCVAKYAARLGQCFSTTR 550
Query: 404 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD-NPPSAFQIR 462
+ + + +I+ I D++ + F+DG+G +S ++ + + L + P+AFQ R
Sbjct: 551 DIKGIWVPDIKYIDDIQ----RNGQCFTDGVGLISKFLSQLIMEEMTLDIFDKPTAFQFR 606
Query: 463 YGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
GG KGV+A P + ++ +R S K++S L+++ + LNRQ I++L +LG
Sbjct: 607 MGGCKGVLAVWPQAQGMEVHIRKSQEKFKSNFQALEIVRCAARSTATLNRQTITILESLG 666
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPD--AEP 578
+ +IF + +E + + D +A + L + + +++ +L ELL G+K D E
Sbjct: 667 VRKKIFMELLKEQISWYENATKDTSEAIKLLTKFVDENQSSLVLAELLKAGFKTDNIQES 726
Query: 579 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 638
F + + + L+ KTRI +P ++GC+DE+ +L + S QL+
Sbjct: 727 FTLNIFNLWLSWSFRLLKEKTRIHVPKSAFVLGCVDESGSLRGHSTETEGSSD---QLNE 783
Query: 639 ES------SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFP 692
+ L S + +QG +V +NP LHPGD+RV++AVN P L H+ D +VFP
Sbjct: 784 KQLPQIFLQLTDPSHEGKTNTIQGKCIVGRNPSLHPGDIRVVQAVNNPKLRHLKDVIVFP 843
Query: 693 QKGMRYILTML 703
KG R + ML
Sbjct: 844 SKGDRPVPAML 854
>gi|451997457|gb|EMD89922.1| hypothetical protein COCHEDRAFT_1138647 [Cochliobolus
heterostrophus C5]
Length = 1228
Score = 265 bits (677), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 152/451 (33%), Positives = 253/451 (56%), Gaps = 25/451 (5%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 322
V +TP+ ++ P + SNR++R + D D F+R+ F DE + + R +
Sbjct: 395 VTITPTMMHVATPVMETSNRIIRKYEADADRFIRVRFTDEKNEGQLRNQPNGRAEA---- 450
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNF 382
++ R+ ++NGI++ R +EFLAF +SQ RE+ A+ +A +A +IR +G F
Sbjct: 451 ----VFDRVFRAMKNGIVVAGRYYEFLAFGNSQFRENGAYFYAPTSSKSANDIRISLGEF 506
Query: 383 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 442
I+ V+K+AARLGQ FS+++ + V + E+ PD K ++F+DG+GK+S A
Sbjct: 507 DHIKTVSKFAARLGQCFSTTR-AMGVTV-ELTTTPDKK----HNNFIFTDGVGKLSPFLA 560
Query: 443 RKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDV 498
+ A + GL + +PPS FQ R GG KGV+A DP + ++ +R S K+ + T L++
Sbjct: 561 QMAAQELGLANAFTDPPSLFQFRLGGSKGVLALDPKLKRNQVKIRPSQYKFRAPYTGLEI 620
Query: 499 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSP 557
+ S + + NRQ+I +LS LG+ D +F +KQ + + + D A + L + +
Sbjct: 621 IRSSSFATPYFNRQIILVLSYLGVQDAVFLRKQEDMMNDYSRAMADETTALQKLRKNIDI 680
Query: 558 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 617
+ T + +++ G+ EPF+ +L +RA + L+ K RI I NG ++GC+DET+
Sbjct: 681 NQTTLTMAAMVLDGFMGSREPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETK 740
Query: 618 TL--NYGQVFVQISGAGYRQLHGESSLF---SSSRSRQRF-IVQGLVVVAKNPCLHPGDV 671
L ++ + +L +F S S+ + I++G+ +VA+NP LHPGDV
Sbjct: 741 KLKGHFNDPQSRRDATRDEKLATLPEIFLQVSDPNSKGHYIIIEGICIVARNPSLHPGDV 800
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
RV++AVNV LHH+ + VVFPQ G R + M
Sbjct: 801 RVVRAVNVEELHHLKNVVVFPQTGDRDLANM 831
>gi|310791166|gb|EFQ26695.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1269
Score = 264 bits (675), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 160/464 (34%), Positives = 252/464 (54%), Gaps = 27/464 (5%)
Query: 249 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KI 307
P S+ + ++ VTPS ++FC P + SNRVLR + D FLR+ F DE K+
Sbjct: 431 PNASMPYYCTTIRKITVTPSTMHFCSPNVESSNRVLRKYNSYQDRFLRVQFTDELYKGKV 490
Query: 308 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR 367
++ T I+ RI L+ GI IG+R +EFLAF +SQ+RE + + F
Sbjct: 491 YNN------------AGTEIFNRIYRVLKQGIKIGNRVYEFLAFGNSQIRECAVYFFCPT 538
Query: 368 YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 427
T +IR+WMG F IRNVAKYAAR+GQ FS+++E V + I D++ +
Sbjct: 539 AYTTCDDIRQWMGEFSHIRNVAKYAARIGQCFSTTREIRGVTVPRIVQAEDIE----RGG 594
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDS 485
Y FSDG+GK+S A V ++ G + PSAFQ R GG KG++A P + ++ +R S
Sbjct: 595 YCFSDGVGKISKLLAEMVVNEMGQESVGIPSAFQFRMGGCKGMLAVWPDAKGLEVHIRPS 654
Query: 486 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
K++++ L+++ +++Y LNRQ I++L+TLG+ E + ++ V+ + + D
Sbjct: 655 QEKFKAQFNGLEIIRFAQYSVATLNRQTITILATLGVESEPILQLAKQQVQNYEKAMRDR 714
Query: 546 LKAQEALELMSPGENTNILKELLICGYKPDA---EPFLSMMLQTFRASKLLELRTKTRIF 602
+ A L T++ + L+C D EPF+ +L +R + L+ K R+
Sbjct: 715 VAAAGLLGRYVDENMTSLTIKDLVCWGFMDTEVQEPFVLTILNLWRIWSVKLLKEKARVI 774
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF---SSSRSRQRFIVQGLVV 659
+ ++GCLDET TL + G R + +F + + + V G+ +
Sbjct: 775 VEQSAFLLGCLDETGTLRGHSKATE--GRETRNIEDIPQIFLQIPNPDDGKFYCVTGVCI 832
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
V +NP LHPGD+RV++AV+VPAL H+ + VVFP G R + +ML
Sbjct: 833 VGRNPSLHPGDIRVVEAVDVPALRHLKNVVVFPSIGDRDVPSML 876
>gi|358384867|gb|EHK22464.1| hypothetical protein TRIVIDRAFT_28428 [Trichoderma virens Gv29-8]
Length = 1158
Score = 264 bits (674), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 158/467 (33%), Positives = 253/467 (54%), Gaps = 48/467 (10%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
V + +TP+ + P + SNRVLR+F D FLR+ F++E +
Sbjct: 330 VLARKAAITPTSILLSSPIVETSNRVLRYFNHIQDRFLRVQFVEE---------MESGRI 380
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE 377
+ T + ++ +IL TL GI IGDR++EFLAF SSQLR+ A+ F ++ +IR
Sbjct: 381 AMTSRNKEDVWKKILRTLYEGIQIGDRRYEFLAFGSSQLRQCGAYFFCPTDHISCDDIRR 440
Query: 378 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 437
WMG IR VAK+AARLGQ FS+++E + + ++ IPD++ + Y F+DG+G +
Sbjct: 441 WMGEVGHIRIVAKHAARLGQCFSTTREMRGLPVPDVRRIPDIE----RNGYCFTDGVGMI 496
Query: 438 SAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTK 495
S AR + + L P+AFQ R GG KGV+ P + K ++ +R+S K+++++
Sbjct: 497 SEFMARMIIEEMTLDVYTEPTAFQFRMGGCKGVLVVWPQAKKGEVYIRESQEKFKADVKG 556
Query: 496 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-EL 554
L+++ +KY LNRQ I++L LG+ F + + + + + A L +
Sbjct: 557 LEIIKCAKYSSATLNRQTITILECLGVSTPAFLAILEKQISLYEEAMKNNNVAVNILTKC 616
Query: 555 MSPGENTNILKELLICGYKPDA--EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 612
+ ++T IL ELL G+K D EPF++ +L +R+ L LR K RI I ++GC
Sbjct: 617 VDENQSTLILAELLQSGFKTDTVQEPFVTNLLALWRSWSLKLLRDKARIPIEKSAFVLGC 676
Query: 613 LDETRTL----------------NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
+DET L Q+F+Q+S +S ++ + + ++G
Sbjct: 677 VDETGILRGHSNATEGTVDKDINKLPQIFLQVS---------DSKVYDQANA-----IEG 722
Query: 657 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
+ +V +NP LHPGD+RV++AV++P LHH+ D VVFP G R + ML
Sbjct: 723 VCIVGRNPSLHPGDIRVVEAVDIPELHHLKDVVVFPSTGDRPVPNML 769
>gi|169595008|ref|XP_001790928.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
gi|111070612|gb|EAT91732.1| hypothetical protein SNOG_00237 [Phaeosphaeria nodorum SN15]
Length = 1523
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 159/451 (35%), Positives = 256/451 (56%), Gaps = 27/451 (5%)
Query: 265 VTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR 324
+TPS ++ P + SNR+ R + D FLR+ F DE + + + P G + D T
Sbjct: 610 ITPSTIHVASPIMETSNRITREYAAIADRFLRVKFSDEKTEGVLRS--IPNGKA--DAT- 664
Query: 325 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 384
+ R+ ++NGI++ R +EFLAF +SQ RE A+ +A +A +IR +G F
Sbjct: 665 ---FDRVRRAMKNGIVVAGRYYEFLAFGNSQFREHGAYFYAPTSTKSADDIRSSLGRFDH 721
Query: 385 IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 444
I+ VAK+ ARLGQ FS+++ + V + ++ IPD++ + Y F+DG+GK+S A+
Sbjct: 722 IKTVAKFGARLGQCFSTTR-AMRVKVTIVK-IPDIE----RNGYCFTDGVGKLSLFLAQM 775
Query: 445 VASKCGLK---DNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLA 500
A + GL D+PPS +Q R GG KGV+A DP + ++ +R S K+E++ L+++
Sbjct: 776 AAQELGLSNAFDDPPSLYQFRLGGCKGVLALDPKITGNEVHIRPSQLKFEAKFLGLEIIR 835
Query: 501 WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGE 559
S F NRQ+I +LS LG+ D + +KQ+E V + +TD A L + + +
Sbjct: 836 SSALATPFFNRQIIVVLSDLGVPDNVLIQKQQEMVNDYEQAMTDKDTAIAKLRKHIDMNQ 895
Query: 560 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 619
T + ++I G+ EPF+ +L+ +RA+ + L+ K RI I +G ++GC+DE+ TL
Sbjct: 896 TTLTMAGMVIDGFMESREPFMMSLLRLWRAATIKNLKEKARIAIEDGAFVLGCVDESGTL 955
Query: 620 NYGQVFVQISGAGYRQ--LHGESSLF-----SSSRSRQRF-IVQGLVVVAKNPCLHPGDV 671
Q RQ + +F + + R + IV+G+ V+A+NP LHPGD+
Sbjct: 956 KGHLNDPQSRSDASRQDKMQTLPEIFLQVDDTEANKRGHYKIVKGVCVLARNPSLHPGDL 1015
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
RV++AV+VPALHH+ + VV PQ G R + M
Sbjct: 1016 RVVRAVDVPALHHLKNVVVLPQTGDRDLANM 1046
>gi|425780985|gb|EKV18967.1| RNA-directed RNA polymerase (Sad-1), putative [Penicillium digitatum
PHI26]
Length = 1533
Score = 263 bits (672), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 155/388 (39%), Positives = 229/388 (59%), Gaps = 18/388 (4%)
Query: 327 IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIR 386
IYTR+ TL NGI IGDR +EFLAF +SQ RE A+ FA G++AA IR WMG F IR
Sbjct: 708 IYTRVKRTLANGISIGDRHYEFLAFGNSQFREHGAYFFAPDAGVSAATIRAWMGQFNHIR 767
Query: 387 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 446
NVAKYAARLGQ FS+++ + ++ DV + + FSDG+GKVS A+ V
Sbjct: 768 NVAKYAARLGQCFSTTRAFTGSSV-QVATCNDVV----RNGFTFSDGVGKVSKFLAQMVT 822
Query: 447 SKCGLK---DNPPSAFQIRYGGYKG--VVAADPTSSKKLSLRDSMRKYESELTKLDVLAW 501
S+ +K PSAFQ R GG KG VV+ DP +++ +R S +K+E+ L+++ W
Sbjct: 823 SQHNIKTLTGESPSAFQFRLGGAKGMLVVSPDPM-PQEVHIRPSQQKFETTQAGLEIIRW 881
Query: 502 SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGEN 560
S+Y LNRQLI +LS LGI D++F K + ++ + KA L+ + P +
Sbjct: 882 SQYSLATLNRQLILVLSALGIPDKVFHSKLNSMLGSFHRVMCNDSKAINLLQKYIDPNQT 941
Query: 561 TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL- 619
T IL +++ G++ + EPF + ML+ +++ L L+ K +I I G +++G +DET L
Sbjct: 942 TLILAQMVSDGFRQNEEPFANTMLELWKSWHLKHLKEKAKIAIDQGANLLGVMDETGVLK 1001
Query: 620 NYGQVFVQISGAGYRQ-LHGESSLFSS----SRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
Y + + GA Y Q L +F + + +++GL ++A+NP LHPGD+RV+
Sbjct: 1002 GYFKNTLPRRGASYAQKLAALPEIFVQICRLEGNGEYEVIEGLCILARNPSLHPGDIRVV 1061
Query: 675 KAVNVPALHHMVDCVVFPQKGMRYILTM 702
+AVN P L + D VV PQ G + I +M
Sbjct: 1062 RAVNRPELKGLRDVVVLPQTGDQDIASM 1089
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 93/211 (44%), Gaps = 24/211 (11%)
Query: 103 DFTPSNFIGQSTGLCMELPYRL--ELPDFKENFAYYKESEDR------FVLETGSAYSRS 154
D P TG C+ L + + F + +++ E DR ++ + S +++
Sbjct: 308 DVDPKIHRVNDTGHCLTLVGDIFKDYNIFIRDGSHFVEKTDRPVPVWHWIDFSESKSNKA 367
Query: 155 LDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH- 213
L+ +G + I LP+++ +++ + + G ++ + F V + +E
Sbjct: 368 SALLQDLGDQNYIHLPFKVRYQLEVCLSQGYLSEFSMSREFVEKVKDLGDDQATRLLEFV 427
Query: 214 ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFC 273
A +K +L +P ++ K +T PS ++H +VTP+ +Y+
Sbjct: 428 ATEKKQYL-----DPMEIFDLKFFKRVTDSKIPSY--------CCFMHTARVTPTTIYYN 474
Query: 274 GPEINVSNRVLRHF--RRDIDNFLRISFIDE 302
P +++SNRV+R + + FLR+ F DE
Sbjct: 475 TPTVDISNRVVREWSTKSAPGRFLRVRFTDE 505
>gi|17227102|gb|AAL38011.1|AF443073_1 putative RNA-dependent RNA polymerase [Phomopsis sp. CMW 5588]
Length = 1122
Score = 263 bits (671), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 155/454 (34%), Positives = 247/454 (54%), Gaps = 23/454 (5%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSS 318
V R +TP+ +YF P + ++NR+LR + D FLR+ F DE KI S+ S + +
Sbjct: 172 VRRAVITPTTIYFKTPCVELTNRILRKYSDLNDRFLRVQFTDEITFGKIFSSQDSNKDDN 231
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
+Y R+ ++NGI IGDR + FLAFS+SQ RE+ A+ F +T IREW
Sbjct: 232 --------LYIRVHRVMQNGISIGDRHYRFLAFSNSQFRENGAFFFCETDHVTCDSIREW 283
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
MG+FR IR+V K+AAR+GQ F+++++ + + I I D++ + G + F+DG+GK+S
Sbjct: 284 MGDFRHIRSVGKFAARMGQCFTTTRQVNGISIPNIRKIDDIERQTGDHTWNFTDGVGKIS 343
Query: 439 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLD 497
FA+ +AS+ L + PS FQ+R GG KGV+ P ++ +R S K+++ L+
Sbjct: 344 NFFAKLIASERDLPET-PSCFQMRIGGGKGVLVVWPDVPPSEVHVRPSQEKFKAVYNVLE 402
Query: 498 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 557
++ + N+Q+I +L LG+ + +F + +R+ D L D +KA E L
Sbjct: 403 IIKTFAFSHATFNKQVIPVLVALGVDNSVFVSMLDDELREYDEALADSMKAGELLRSQVD 462
Query: 558 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 617
T + ++ + EPFL +L+ ++ L L+ K I + + G +DE
Sbjct: 463 ENQTTLTMAEMVDTFMDSKEPFLWTLLRLWKCWILKRLKHKFAISVKKSAMVFGVVDEIG 522
Query: 618 TL-NYGQVFVQISGAGYRQLHGESSLF-------SSSRSRQRF-IVQGLVVVAKNPCLHP 668
L + Q G GY + +F S RS + ++ G+ VV +NP LHP
Sbjct: 523 VLRGHSQA---TEGRGYNSIESLPQIFLQVPIEGSDGRSTTNYEVITGICVVGRNPSLHP 579
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
GDVRV++AV+VP L H+ + VVFP+ G R I +M
Sbjct: 580 GDVRVVEAVDVPELRHLKNVVVFPKTGDRDIPSM 613
>gi|340975703|gb|EGS22818.1| RNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 1626
Score = 262 bits (670), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 189/602 (31%), Positives = 304/602 (50%), Gaps = 87/602 (14%)
Query: 143 FVLETGSAYSRSL---DLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFY--- 196
LE +A S SL DLV ++G P +LP++I +++ + + G + + F
Sbjct: 457 MTLEAPAASSNSLCFSDLV-LLGFPTNTSLPFDIRYQLEVCLSRGVLCEYNITQEFLDKL 515
Query: 197 -RLVDPYRAPVSIS--CIEHALDKLYHLKECCYEPSRWLTDQYR-KYM-TSRSKPSSPAI 251
L P VS + +E+A D+ + ++P +DQ Y T+ PS A+
Sbjct: 516 LELSKPDGMEVSRARLILEYAADQGKRI----WDPMSLFSDQAALSYCPTTLHIPSHCAL 571
Query: 252 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHST 310
V +V +TP+R+YF P + +NRV+RH+ R D F+R+ F DE ++ +I S
Sbjct: 572 --------VRKVTITPTRIYFSTPTVETTNRVVRHYGRFRDYFIRVQFTDEVMEGRIRS- 622
Query: 311 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----S 366
S TD +Y R+ LR+GI +G ++FLA+ +SQ+RE ++ F +
Sbjct: 623 -------SYTD-REDNVYARVFRVLRHGIRMGKWHWKFLAYGNSQIRECGSFFFCEPEEA 674
Query: 367 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 426
+T IREWMG F I+++AK AARLGQ FS+++ + I DV+ +
Sbjct: 675 HGTITCDSIREWMGRFSHIKSIAKLAARLGQCFSTTRPLPGITAPTIIKTQDVE----RN 730
Query: 427 KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS-SKKLSLRDS 485
Y F+DG+GK+S A +A + P SAFQ R GG KGV+ P + ++ +R S
Sbjct: 731 GYCFTDGVGKISPLLAFFIAEDWKVYPTP-SAFQFRMGGCKGVLVTWPDAKGTEVHIRPS 789
Query: 486 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
K+ +E L+++ S + LNRQ I++LS LG+ +F E + DA + DP
Sbjct: 790 QEKFSAEFNGLEIIRCSHFSCATLNRQTITILSCLGVPSYVFLDMMEEQLANYDAAMEDP 849
Query: 546 LKAQEALEL-MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
KA + L + T + E+++ G+ EPF+ +LQ +RA + L+ K R+ +
Sbjct: 850 DKAIDLLTTYVDENMTTLTMSEMVLDGFMETREPFVRSLLQLWRAWSIKALKEKARLVVK 909
Query: 605 NGRSMMGCLDETRTL--------------------NYGQVFVQI----SGAGYRQLHGES 640
G ++GC+DET TL Q+F+Q+ +G Y+
Sbjct: 910 KGAFVLGCVDETGTLRGHSRATEGTKNQPKEVRRDQLPQIFLQVPDHENGGTYK------ 963
Query: 641 SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYIL 700
++ GL +V +NP LHPGD+R+++AV+VP L H+ D VVFP +G R +
Sbjct: 964 ------------VITGLCLVGRNPSLHPGDIRMVEAVDVPQLRHLRDVVVFPLQGDRDVP 1011
Query: 701 TM 702
+M
Sbjct: 1012 SM 1013
>gi|322705481|gb|EFY97066.1| suppressor of ascus dominance [Metarhizium anisopliae ARSEF 23]
Length = 1315
Score = 261 bits (667), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 168/553 (30%), Positives = 288/553 (52%), Gaps = 42/553 (7%)
Query: 164 PDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKE 223
P I LP+E+ +++ + + G + + +F + ++ + + +E+ +D+ E
Sbjct: 364 PQKIHLPFEVRYQLEVCISRGVLNEYAIGIDFLQELNNLQTMDATHRLEYLVDQ----NE 419
Query: 224 CCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRV 283
++P + + + PA + YV + +T + + F P + SNRV
Sbjct: 420 ILFDP-------MKLFSMEDATAFVPAARIPHYCTYVRKASITATTIRFNSPTVETSNRV 472
Query: 284 LRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGD 343
+R + D FLR+ F++E ++L G T +I+ R+ L GI IGD
Sbjct: 473 VRKYSHLQDRFLRVQFVEE-------SELVRLGK--TKYKNDKIWKRVERALSQGIRIGD 523
Query: 344 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 403
R++EFLAF SSQLR+SSA+ F L+ +IR WMG F I+ VAKYAAR+GQ FS+++
Sbjct: 524 RQYEFLAFGSSQLRQSSAYFFCPTGHLSCEDIRAWMGQFDHIKCVAKYAARIGQCFSTTR 583
Query: 404 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD-NPPSAFQIR 462
+ + + +I+ I D++ + F+DG+G +S ++ + + L + P+AFQ R
Sbjct: 584 DIKGIWVPDIKYIDDIQ----RNDQCFTDGVGLISKFLSQLIMEEMTLDIFDKPTAFQFR 639
Query: 463 YGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
GG KGV+A P + ++ +R+S K++S+ L+++ + LNRQ I++L +LG
Sbjct: 640 MGGCKGVLAVWPQAQGMEVHIRNSQEKFKSDFQGLEIVRCAARSTATLNRQTITILESLG 699
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN----ILKELLICGYKPDA- 576
+ ++F +E + + D EA++L++ + N +L ELL G+ D
Sbjct: 700 VPKKMFMALLKEQISWYENAAKD---TSEAIKLLTKFVDENQSSLVLAELLKAGFMTDNV 756
Query: 577 -EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV-----QISG 630
EPF + + LR KTRI +P ++GC+DE+ +L + Q++
Sbjct: 757 REPFTLNTFNLWLSWSFRLLREKTRIHVPKSAFVLGCVDESGSLRGHSIETEGCSDQLNE 816
Query: 631 AGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVV 690
Q+ + L S + I+QG +V +NP LHPGD+RV++AVN P L H+ D +V
Sbjct: 817 NKLPQIFLQ--LTDPSHEGKTNIIQGKCIVGRNPSLHPGDIRVVQAVNNPKLRHLKDVIV 874
Query: 691 FPQKGMRYILTML 703
FP KG R + ML
Sbjct: 875 FPSKGDRPVPAML 887
>gi|396468594|ref|XP_003838211.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
gi|312214778|emb|CBX94732.1| hypothetical protein LEMA_P117350.1 [Leptosphaeria maculans JN3]
Length = 1004
Score = 261 bits (666), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 160/528 (30%), Positives = 280/528 (53%), Gaps = 40/528 (7%)
Query: 213 HALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYF 272
H L+++ + YEP + + R + + + D V V +TP+ +Y
Sbjct: 8 HILERVVDKQHVYYEPMDVFSLKIRGSLKRK---------VPDYCVLQRSVVITPTMMYV 58
Query: 273 CGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRIL 332
P + SNR+ R + D D F+R+ F DE + + R + +++R+
Sbjct: 59 ASPLMETSNRITRKYAADADRFIRVKFSDEKNEGVLRNMPGNRAEA--------VFSRVH 110
Query: 333 STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYA 392
+ G+++ R +EFLAF +SQ RE A+ +A +A +IR +G F I+ VAK+
Sbjct: 111 HAMTQGVVVAGRYYEFLAFGNSQFREHGAYFYAPTSSKSADDIRISLGKFDHIKTVAKFG 170
Query: 393 ARLGQSFSSSKETL-SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 451
AR+GQ FS++++ SV + EI+ ++ + + F+DG+GK+S A+ A + GL
Sbjct: 171 ARIGQCFSTTRKMRNSVILQEID-------DVERNGHTFTDGVGKLSLFIAQMAAKELGL 223
Query: 452 K---DNPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDSMRKYESELTKLDVLAWSKYQPC 507
D+PP+ FQ R GGYKGV+A DP+ K ++ +R S K+ +E + L+++ S
Sbjct: 224 PNPFDDPPTLFQFRLGGYKGVLALDPSIQKSEVHVRPSQHKFVAEYSGLEIIRSSALATP 283
Query: 508 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP-LKAQEALELMSPGENTNILKE 566
F NRQ+I +LS LG+ D +F +KQ+ V + ++D + Q+ + + + T +
Sbjct: 284 FFNRQIIMVLSNLGVSDHVFIRKQQNMVNDYENAMSDEQIAVQKLRKHIDMNQTTLTMAG 343
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL--NYGQV 624
+++ G+ EPF+ +L +R+ + L+ K RI + +G ++GC+DE+ L +
Sbjct: 344 MVLDGFMKSQEPFVMSLLMLWRSHTIKNLKEKARIAVEDGAFVLGCVDESALLKGHMDDP 403
Query: 625 FVQISGAGYRQLHGESSLF----SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 680
++ +L +F +++ I++GL V+A+NP LHPGD+RV++AV++P
Sbjct: 404 QSRLDATRDEKLATLPEIFMQVDDTTKPGHYKIIEGLCVLARNPSLHPGDLRVVRAVDIP 463
Query: 681 ALHHMVDCVVFPQKGMRYILTMLKPRLL----WYELNSSHALPRFIVV 724
AL H+ + VV PQ G R + +M L + L SH LP+ I V
Sbjct: 464 ALRHLRNVVVLPQTGERDLASMCSGGDLDGDDYMVLWDSHLLPKIINV 511
>gi|342879234|gb|EGU80489.1| hypothetical protein FOXB_08949 [Fusarium oxysporum Fo5176]
Length = 1391
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 172/564 (30%), Positives = 291/564 (51%), Gaps = 67/564 (11%)
Query: 164 PDGIA-LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK 222
PD I LP+EI +++ + + G + ++ F + + + C+E D
Sbjct: 390 PDSIVHLPFEIRYQLEVCLSRGYLNEHMIGREFLERLANMKPAKARLCLESVADN----A 445
Query: 223 ECCYEPSRWLTD-QYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 281
+ +P L + Q + PS + + + +TP+ + + P + +SN
Sbjct: 446 QVVIDPMAILEESQIDGSIIMSRIPSHCCL--------IRKAVITPTTIRYTTPTVEMSN 497
Query: 282 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRT-RIYTRILSTLRNGIL 340
RV+R ++ D FL+I F +E +G A + + IY R+L ++ G+
Sbjct: 498 RVMRRYKHYEDRFLKIQFTEE----------MEKGRIAVNKDQNDEIYKRVLRSMYKGVR 547
Query: 341 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 400
IGDR +EFLAF +SQLR + A+ F L+ +IR WMG F I+ VAKYAARLGQ FS
Sbjct: 548 IGDRFYEFLAFGNSQLRVNGAYFFCPTEHLSCDDIRRWMGQFSHIKVVAKYAARLGQCFS 607
Query: 401 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP-PSAF 459
+++E ++ + IPD++ + Y F+DGIGK+S+ A+ ++ L PSAF
Sbjct: 608 TTRELHAISAPATQQIPDIE----RNGYCFTDGIGKISSFLAQLISEDMILDVVARPSAF 663
Query: 460 QIRYGGYKGVVAADPTSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 517
Q R GG KGV+A P +K ++ +R+S +K+ES+ L+++ + LNRQ I++L
Sbjct: 664 QFRMGGCKGVLAIWPNDTKVMEVHIRESQKKFESDSKGLEIIRSAAMATATLNRQTITIL 723
Query: 518 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPD-- 575
LG+ F +R + + D A+++++ + N + +LL G+K D
Sbjct: 724 ECLGVPIASFTNLLDHQLRSYELAMED---NDVAIDMLTKFVDENNISDLLRAGFKTDDL 780
Query: 576 AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL---------------- 619
EPF+ +L+ +R+ L L+ K RI + ++GC+DET TL
Sbjct: 781 QEPFVVNVLKLWRSWSLKLLKEKARIQVQKSAFVLGCVDETGTLRGHSSETEGSEDKATD 840
Query: 620 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 679
Q+F+Q+S A + ++ ++ ++ G+ ++ +NP LHPGD+RV++AV+
Sbjct: 841 RLPQIFIQLSDATH---------YNKTQ-----VISGVCIIGRNPSLHPGDIRVVEAVDC 886
Query: 680 PALHHMVDCVVFPQKGMRYILTML 703
PALHH+ D VVFP G + + ML
Sbjct: 887 PALHHLRDVVVFPSTGDQPVPNML 910
>gi|302918417|ref|XP_003052653.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
gi|256733593|gb|EEU46940.1| hypothetical protein NECHADRAFT_91974 [Nectria haematococca mpVI
77-13-4]
Length = 1250
Score = 259 bits (662), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 166/478 (34%), Positives = 252/478 (52%), Gaps = 50/478 (10%)
Query: 248 SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI 307
SP + V +V VTP+ + F P + +SNRV+R ++ D FLRI F++E +
Sbjct: 408 SPIARIPQYCALVRKVVVTPTTIRFNSPAVEMSNRVMRQYKHIQDRFLRIQFVEE----L 463
Query: 308 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR 367
+T ++ +I Y R+L T+ GI IGDR +EFLAF SSQLR + A+ F
Sbjct: 464 ENTRIAINKDQNDEI-----YKRVLRTMYQGIRIGDRVYEFLAFGSSQLRVNGAYFFCPT 518
Query: 368 YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 427
+ +IR+WMG F I+ VAKYAARLGQ FS+++E + I IPD++ +
Sbjct: 519 EHTSCDDIRKWMGQFSHIKVVAKYAARLGQCFSTTREVRGISSPAIREIPDIE----RNG 574
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSK-KLSLRDS 485
+ FSDG+GK+S A+ V L + PSAFQ R GG KGV+ P + ++ +R+S
Sbjct: 575 HCFSDGVGKISPFVAQLVNEDMALDIFDKPSAFQFRMGGCKGVLTVWPDAKGMEVHVRES 634
Query: 486 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
+K+E++ L+++ + + LNRQ I +L +LG+ + F + + + + D
Sbjct: 635 QKKFEADSKGLEIIRCAGFATATLNRQTIIILESLGVPIKAFTDLLDQQLGSYEQAMQDN 694
Query: 546 LKAQEALELMSPGENTN-ILKELLICGYKPDA--EPFLSMMLQTFRASKLLELRTKTRIF 602
A E L TN ++ ELL +K D EPF+ +L +RA L L+ K RI
Sbjct: 695 GVAIEMLAKFVDEHQTNLVIAELLKAEFKTDELREPFVINVLSLWRAWSLKILKEKARIQ 754
Query: 603 IPNGRSMMGCLDETRTLN----------------YGQVFVQISGA-GYRQLHGESSLFSS 645
+ ++GC+DET TL Q+F+QI+ + Y + H
Sbjct: 755 VEKSAFVLGCVDETETLRGHSKDSEGSKPKDVNMLPQIFLQITDSRNYNKTH-------- 806
Query: 646 SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
I+QG+ +V +NP LHPGD+RV++AV+ L H+ D VVFP G R + ML
Sbjct: 807 -------IIQGVCIVGRNPSLHPGDIRVVEAVDCSKLRHIKDVVVFPATGDRPVPNML 857
>gi|116193483|ref|XP_001222554.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
gi|88182372|gb|EAQ89840.1| hypothetical protein CHGG_06459 [Chaetomium globosum CBS 148.51]
Length = 1572
Score = 259 bits (661), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 176/557 (31%), Positives = 289/557 (51%), Gaps = 52/557 (9%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFY---------RLVDPYRAPVSISCIEHALDK 217
I+LPYE+ +++ + + G ++ + +F R + P RA + +E+A D+
Sbjct: 401 ISLPYEVRYQLEVCISRGILSEYNIRRDFLEKLFEMSKPRDLKPNRARL---VLEYAADE 457
Query: 218 LYHLKECCYEPSRWLTDQ--YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 275
+ Y P D+ Y T+ + + D V +V VTP+R++F P
Sbjct: 458 ----GKPVYNPMELFEDRGAMAYYPTT--------LHIPDYCALVRKVTVTPTRIFFSTP 505
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATDITRTRIYTRILST 334
+ +NRV+R ++ D+F+R+ F DE LD +I ++D+ +Y R+
Sbjct: 506 TVETTNRVVRRYKDVQDHFIRVQFTDELLDGRIRASDVD---------RDDELYARVCRV 556
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG--LTAAEIREWMGNFREIRNVAKYA 392
+ GI +G ++FLAF +SQ+RE+ A+ F T IREWMGNF I +VAK A
Sbjct: 557 MTQGIRMGKWHWKFLAFGNSQIRENGAFFFCEPEDGTTTCHSIREWMGNFDHISSVAKLA 616
Query: 393 ARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK 452
ARLGQ FS+++ + I IPD++ G + F+DG+GK+S A V+ +
Sbjct: 617 ARLGQCFSTTRLLNCISAPRIVKIPDIESNDG---FCFTDGVGKISFPLASLVSEAWKI- 672
Query: 453 DNPPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNR 511
D PSAFQ R GG KGV+ P + ++ +R S K+ +E L+++ S++ LNR
Sbjct: 673 DTRPSAFQFRMGGCKGVLVTWPDAKGTEVHVRPSQEKFSAEYNGLEIIRCSQFSCPTLNR 732
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL--- 568
Q I +LS LG+ D++F + D +T+ A+EL+S + N+ +
Sbjct: 733 QTILILSCLGVPDDVFIDMMAGQIASYDTAMTN---QDRAIELLSKYVDGNMTTTTIATM 789
Query: 569 -ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFV 626
+ G+ EPF+ +LQ +R+ + L+ K R+ + G ++GC+DET TL + +
Sbjct: 790 ILNGFMHTREPFVRTLLQLWRSWSIKGLKEKARLVVDQGAFLLGCVDETGTLRGHSRATE 849
Query: 627 QISGAGYRQLHGESSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
+G L + R + +V G+ +V +NP LHPGD+RV++AV+VP L H+
Sbjct: 850 GRNGITQNDLPQIFLQVPDRKDRGAYKVVTGICIVGRNPSLHPGDIRVVEAVDVPELRHL 909
Query: 686 VDCVVFPQKGMRYILTM 702
D VVFP KG R + +M
Sbjct: 910 RDVVVFPLKGDRDVPSM 926
>gi|330935167|ref|XP_003304850.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
gi|311318353|gb|EFQ87064.1| hypothetical protein PTT_17559 [Pyrenophora teres f. teres 0-1]
Length = 1458
Score = 256 bits (654), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 148/452 (32%), Positives = 255/452 (56%), Gaps = 27/452 (5%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATD 321
V +TP+ ++ P + SNR++R + D D F+R+ F DE + ++ S P G S
Sbjct: 575 VVITPTMMHVASPVMETSNRIIRKYAADSDRFIRVKFSDEKTEGQLRSM---PNGKSEA- 630
Query: 322 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGN 381
++ R+ +R+GI++ R +EFLAF +SQ RE A+ +A +A +IR +G+
Sbjct: 631 -----VFDRVRRAMRHGIVVAGRYYEFLAFGNSQFREHGAYFYAPTSSKSADDIRLSLGD 685
Query: 382 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF 441
F +I+ VAK+ ARLGQ FS+++ ++++I P IE + + F+DG+GK+S
Sbjct: 686 FTQIKTVAKFGARLGQCFSTTR----AMREKVKITPIPDIE--RNGHTFTDGVGKLSPFV 739
Query: 442 ARKVASKCGLK---DNPPSAFQIRYGGYKGVVAAD-PTSSKKLSLRDSMRKYESELTKLD 497
A+ A + GL D+PPS FQ R GG KGV+A D + ++ +R S +K+ ++ L+
Sbjct: 740 AKMAAKELGLSNAFDDPPSLFQFRLGGCKGVLALDLNITGTEVHIRPSQQKFHAKFMGLE 799
Query: 498 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD-PLKAQEALELMS 556
++ S F NRQ+I +LS LG+ D + KKQ+E V + +TD + Q+ + +
Sbjct: 800 IIRSSALATPFFNRQIIVVLSHLGVPDHVIIKKQQEMVNDYETAMTDESIALQKLRKHID 859
Query: 557 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 616
++T + +++ G+ +PF+ +L+ +RA + L+ K RI I +G ++GC+DET
Sbjct: 860 MNQSTLTMAAMVLDGFMKIQDPFMMSLLKLWRACTIKNLKEKARIAIEDGAFVLGCVDET 919
Query: 617 RTL--NYGQVFVQISGAGYRQLHGESSLF----SSSRSRQRFIVQGLVVVAKNPCLHPGD 670
L + ++ +L +F + + I++G+ ++A+NP LHPGD
Sbjct: 920 AKLKGHMNDPQSRLDATRDEKLATLPEIFLQVDDTDKKGHYKIIEGVCILARNPSLHPGD 979
Query: 671 VRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
+RV++AVN+P L H+ + VV PQ G R + M
Sbjct: 980 LRVVRAVNIPELRHLKNVVVLPQTGDRDLANM 1011
>gi|240282192|gb|EER45695.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 396
Score = 255 bits (651), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 148/401 (36%), Positives = 237/401 (59%), Gaps = 28/401 (6%)
Query: 325 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 384
+ +Y R+ L++GI+IGDR +EFLAF +SQ RE A+ FAS LTAA IR MG+
Sbjct: 2 SEVYARVTRILQHGIIIGDRHYEFLAFGNSQFREHGAFFFASLPHLTAANIRAQMGDLNN 61
Query: 385 IRNVAKYAARLGQSFSSSKETLS--VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 442
I+ VAKYAARLGQ FS+++ S V + E++ +I + YVFSDG+G++S
Sbjct: 62 IKVVAKYAARLGQCFSTTRAVTSCPVQLKEVD-------DIERNGYVFSDGVGRLSHFLT 114
Query: 443 RKVASKCGLK---DNPPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDV 498
+ + S G+ PPSAFQ R GG KG++A + +++ +R S K+ + L++
Sbjct: 115 QMIRSDLGINTPSGQPPSAFQFRLGGCKGILAVSSDAHGQEVHIRKSQYKFAAAHHGLEI 174
Query: 499 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSP 557
+ S + LNRQLI +LS LG+ D++F K R + +L+ +T+ +A L+ + P
Sbjct: 175 IRHSHFSLATLNRQLILVLSCLGVPDKVFIAKLRMMMDKLEQAMTNEEQAVHLLQTHVDP 234
Query: 558 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 617
+ T IL +++ G++ EPF+S +L+ +R ++ L+ K +I I G ++GC+DET+
Sbjct: 235 NQMTLILADMVRDGFQGSKEPFVSSLLELWRTWQIKYLKEKAKIAIDEGAFLLGCIDETK 294
Query: 618 TLNYGQVFVQISGAGYRQLHGES---------SLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
TL + + + S G + ES ++ S + I++G+ ++A+NP LHP
Sbjct: 295 TL---KGYFRSSRPGQDATYEESVACLPEIFVQVWRHSEGK-YVIIEGVCILARNPSLHP 350
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTMLKPRLLW 709
GD+RV+KAVN P+LHH+ D VV PQ G+ + P ++W
Sbjct: 351 GDIRVVKAVNAPSLHHLRDVVVLPQLGIETSQACV-PGVIW 390
>gi|391341002|ref|XP_003744822.1| PREDICTED: probable RNA-dependent RNA polymerase SHL2-like
[Metaseiulus occidentalis]
Length = 1356
Score = 254 bits (648), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 177/487 (36%), Positives = 257/487 (52%), Gaps = 34/487 (6%)
Query: 235 QYRKYMTSRSKPSSPAISLDD------GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 288
Q+RK+ + I+ D G+ +++V +TPSR PE + NR+LR
Sbjct: 372 QFRKFRVQEREKKRKGIADCDSERSLQGMAIIYKVFLTPSRTILRPPEEHGENRILRQVS 431
Query: 289 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 348
RD LR++F D++L+K+ G R + + LR+GI I +R +E+
Sbjct: 432 RDY--MLRVAFRDDNLEKLTHNLTREEG-------RNFLEYFLKGFLRDGIEIENRTYEY 482
Query: 349 LAFSSSQLRESSAWMFA-SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS 407
LA SSSQLR+ W +A +G + IRE MG+F +I+NV K AR G FSS+ ET+
Sbjct: 483 LAASSSQLRDHGCWYYAKDEHGRDSKSIREEMGSFDDIKNVGKKMAREGLCFSSTIETVK 542
Query: 408 VHMDEIEIIPDV---KIEIGKTKYVFSDGIGKVSAEFARKV--ASKCGLKDNPPSAFQIR 462
V DE I D+ E Y FSDGIGK+SAE V A K L+D PSAFQIR
Sbjct: 543 VSEDECTIEEDITGGAHEKSNKPYTFSDGIGKISAELRDDVCEALKDSLRDKKPSAFQIR 602
Query: 463 YGGYKGVVAADPT-SSKKLSLRDSMRKYES-ELTKLDVLAWSKYQPCFLNRQLISLLSTL 520
+ G KG+VA DP ++L LR SM K+ S + +V+ +S+ + LN+Q+I++L L
Sbjct: 603 FRGAKGMVAFDPCLEGRRLVLRKSMVKFASTSSSSFEVIKYSEDRSLTLNKQIITILEQL 662
Query: 521 GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNIL--KELLICGYKPDAEP 578
G+ EIF + Q + L +A E L + ++ + G +P
Sbjct: 663 GVPAEIFLRYQEANIIDFADALLFENQAHERLTASIKKDPDCVIDFSKFREFGMSVVRDP 722
Query: 579 FLSMMLQTFRASKLLELRTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQ------ISG 630
+ ML + LR K RI IP GR+++G +DET L YGQV+V+ SG
Sbjct: 723 YFRAMLIELYRYIITNLRDKARISIPWGLGRNLLGVIDETGKLEYGQVYVRYTPREDTSG 782
Query: 631 AGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVV 690
+ + + R +V+G V+V K PC+HPGDVR+L+AV++P L H+VD +V
Sbjct: 783 PDIK-VDNNTDEDGVPRQAGTEVVKGRVLVTKCPCVHPGDVRMLEAVDIPELAHLVDVIV 841
Query: 691 FPQKGMR 697
FPQKG R
Sbjct: 842 FPQKGPR 848
>gi|171685025|ref|XP_001907454.1| hypothetical protein [Podospora anserina S mat+]
gi|170942473|emb|CAP68125.1| unnamed protein product [Podospora anserina S mat+]
Length = 1493
Score = 254 bits (648), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 164/471 (34%), Positives = 246/471 (52%), Gaps = 57/471 (12%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V +V VTP+++ F P + +NRV+RH+ + F+RI F DE L+ RGS A
Sbjct: 529 VRKVMVTPTKIIFSTPTVETTNRVIRHYWTFQNYFMRIQFTDEQLEG------RVRGSDA 582
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF------ASRYGLTAA 373
+YTR+ L GI +G ++FLAF +SQ+RE+ A+MF A +
Sbjct: 583 D--RDDDLYTRVYRVLFWGIRMGKWHWKFLAFGNSQVRENGAFMFCQPDSHAGDMVPSCD 640
Query: 374 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 433
+IR WMGNF I+ VAKYAARLGQ FS+++ I I D+ GK + F+DG
Sbjct: 641 DIRRWMGNFEHIKVVAKYAARLGQCFSTTRVLRGGTFPPIVEIEDINTADGK--HCFTDG 698
Query: 434 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-VAADPTSSKKLSLRDSMRKYESE 492
+G++S +R VA + PPSA+Q R GG KGV V ++ +R S K+ +
Sbjct: 699 VGRISPLLSRLVAEDWQVY-PPPSAYQFRMGGCKGVLVGWKHAKGTEVHIRPSQEKFSAA 757
Query: 493 LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
L+V+ S + LNRQ I++LS+LG+ D +F RE + + D +TD A + L
Sbjct: 758 YNGLEVVRCSSFSCATLNRQTITILSSLGVPDHVFVDLMREQLSRFDRAMTDGKSAVDML 817
Query: 553 -ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 611
+ T + ++ G+ EPF+ +LQ +RA L L+ K R+ + G ++G
Sbjct: 818 TSFVDENMTTVSIARMIKSGFMDSNEPFVKTVLQLWRAWSLKTLKEKARLAVEKGAFVLG 877
Query: 612 CLDETRTL----------------NYGQVFVQISG----AGYRQLHGESSLFSSSRSRQR 651
C+DET TL Q+F+QI +GY+
Sbjct: 878 CVDETGTLRGHSKATEGRQRIRRDQLPQIFLQIPDRDDPSGYK----------------- 920
Query: 652 FIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
+ GL ++ +NP LHPGD+RV++AV+VPAL H+ D VVFP +G R + +M
Sbjct: 921 -AIAGLCIIGRNPSLHPGDIRVVEAVDVPALRHLRDVVVFPLEGDRDVPSM 970
>gi|15422180|gb|AAK95829.1| putative RNA-dependent RNA polymerase [Diaporthe ambigua]
Length = 1483
Score = 253 bits (647), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 171/571 (29%), Positives = 288/571 (50%), Gaps = 55/571 (9%)
Query: 154 SLDL-VPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFY-RLV--DPYRAPVSIS 209
S DL + ++G D L + + +++ + + +G + + + F RL+ D RA + +
Sbjct: 457 STDLTLELLGSTDAYHLDFPVRYQLEVCISHGLLDEYSIGAQFLGRLISFDTDRARMLLE 516
Query: 210 CIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSR 269
+ A + + E +P + +R+ P + V R +TP+
Sbjct: 517 GVAEANRQFFEPMEIFDDPK-----ILHYWPNARTPPYA---------TLVRRAVITPTA 562
Query: 270 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 329
+YF P + ++NR+LR + D FLR+ F DE I S + S D ++T
Sbjct: 563 IYFKSPCVELTNRILRKYSDLNDRFLRVQFTDE----ITSGKIFSSQDSTKD---DNLFT 615
Query: 330 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVA 389
R+ +RNGI+IGDR + FLAFS+SQ RE+ A+ F + +T IREWMG+FR IR+V
Sbjct: 616 RVHRVMRNGIVIGDRHYRFLAFSNSQFRENGAFFFCNTDHVTCESIREWMGDFRHIRSVG 675
Query: 390 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 449
K+AAR+GQ F+++++ + + +I I D++ + G + F+DG+GK+S A +A++
Sbjct: 676 KFAARMGQCFTTTRQVNGISIPKIRQIGDIQQQTGDHIWNFTDGVGKISPFLATLIANER 735
Query: 450 GLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 508
L + PS FQIR GG KGVV P ++ +R S K+++ L+++ S +
Sbjct: 736 NLPET-PSCFQIRMGGCKGVVVTWPDVPPSEVHVRPSQEKFKAVYNGLEIIKTSAFSHAT 794
Query: 509 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 568
LN+Q+I +L LG+ +F + + + L D ++A E L T + +
Sbjct: 795 LNKQVIPVLVALGVDKSVFVSMLDSELTEYEEALADSMRAGELLRSQVDENQTTLTLAEM 854
Query: 569 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL--------- 619
+ + EPFL +L+ ++ L L+ K I + N + G +DE L
Sbjct: 855 VDTFMDSEEPFLWTLLRLWKCWVLKRLKQKFAISVKNSAMVFGVVDEIGVLRGHSQATEG 914
Query: 620 -------NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDV 671
+ Q+F+Q+ G S +S + ++ GL VV +NP LHPGDV
Sbjct: 915 RRDNNIESLPQIFLQVPVEG-----------SDGKSTTNYEVITGLCVVGRNPSLHPGDV 963
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
RV++AV+ L H+ + VVFP+ G R I +M
Sbjct: 964 RVVEAVDALELRHLKNVVVFPRTGDRDIPSM 994
>gi|429860171|gb|ELA34917.1| suppressor of ascus dominance [Colletotrichum gloeosporioides Nara
gc5]
Length = 1353
Score = 253 bits (645), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 249/456 (54%), Gaps = 30/456 (6%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSS 318
+ +V VTP+ VY+ P + SNRVLR F D FLR+ F DE KI+S
Sbjct: 522 IRKVVVTPTTVYYSSPGVESSNRVLRKFSEYQDRFLRVQFTDELYYGKIYSD-------- 573
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
+ +++R+ TL GI IG R +EFLAF +SQ+RE + + F + IR+W
Sbjct: 574 ----SGEELFSRVYRTLAKGITIGSRHYEFLAFGNSQIRECAVYFFCPTDHRSCDCIRDW 629
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
MG+F I+NVAKYAAR+GQ FS+++E + I I DV+ + + FSDG+GK+S
Sbjct: 630 MGDFGHIKNVAKYAARIGQCFSTTREIPGTTVANIVPIEDVE----RNGFCFSDGVGKIS 685
Query: 439 AEFARKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELT 494
A V + D + PSAFQ R GG KG++A P + ++ + +R S K+++
Sbjct: 686 QLLAHIVVVEMSSDDACISVPSAFQFRMGGCKGMLAVWPDAKRQEVHIRPSQEKFKATFN 745
Query: 495 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-E 553
L+++ ++++ LNRQ I++L++LG+ E K ++ + D + A L +
Sbjct: 746 GLEIIKYAQHSIATLNRQTITVLTSLGVRAETILKLAERQIKNYQKAMNDRVAAASLLGQ 805
Query: 554 LMSPGENTNILKELLICGY-KPD-AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 611
+ + +K+L+ G+ P+ EPF+ +L +R + L+ K R+ + ++G
Sbjct: 806 YIDENLTSLTIKDLVGWGFMDPEIQEPFVLTILDLWRIWSMKLLKEKARVIVEESAFLLG 865
Query: 612 CLDETRTLNYGQVFVQISGAGYRQLHGESSLF----SSSRSRQRFIVQGLVVVAKNPCLH 667
CLDET +L + G + +F S S S + V GL +V +NP LH
Sbjct: 866 CLDETGSLRGYSTATE--GKKTNNIEDLPQVFLQVESPSGSGKFTCVTGLCIVGRNPSLH 923
Query: 668 PGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
PGD+RV++AV+VP LHH+ + VVFP+ G R + +M+
Sbjct: 924 PGDLRVVEAVDVPQLHHLRNVVVFPRNGDRDVPSMM 959
>gi|453080014|gb|EMF08066.1| RdRP-domain-containing protein, partial [Mycosphaerella populorum
SO2202]
Length = 446
Score = 251 bits (640), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 151/408 (37%), Positives = 225/408 (55%), Gaps = 33/408 (8%)
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
A D +++R+ + GI +G R +EFLAF ++Q R+ A+ FAS G+TAA+IR+W
Sbjct: 3 ADDAGMNEVFSRVKRAMAQGINVGGRHYEFLAFGNAQFRDHGAYFFASTTGVTAADIRDW 62
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
MG+F IR +AKY +RLGQ FS+++ H +E I DV+ + + F+DG+GK+S
Sbjct: 63 MGDFTSIRIIAKYVSRLGQCFSTTRAI--PHAVNVEKIDDVE----RNGFCFTDGVGKIS 116
Query: 439 AEFARKVASKCGLKDNP---PSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT 494
AR +A G+ ++ PS FQIR G KGV+A DP K+ +R S +K+ ++
Sbjct: 117 PFLARMIAHHYGMANSEQDYPSVFQIRLAGCKGVLAVDPRLKGMKIQIRPSQQKFPAKSN 176
Query: 495 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL 554
L++ S++ LN QLI +LS LG+ DE+F K R + L L Q+ALEL
Sbjct: 177 GLEICRISQFSTASLNVQLILVLSALGVPDEVFLNKLRNMLSDLQEALD---SEQKALEL 233
Query: 555 MSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
+ + N + L C G+ +PF+ L+ +R+ L L+ K RIFI G ++
Sbjct: 234 LQKNVDFNQMTISLACMIFDGFMATKDPFVMTCLRLWRSWNLKYLKEKARIFIDQGAFLL 293
Query: 611 GCLDETRTLN---------YGQVFVQISGAGYRQLHGESSL-------FSSSRSRQRFIV 654
GC DE+ TL G + Q S H ES+L + + +V
Sbjct: 294 GCTDESATLRGHFKSVADPNGILKDQQSTEADVDKHDESALPEIFLQIPDAEKPGSYKVV 353
Query: 655 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
G+VV+A+NP LHPGD+RV+KAV+ AL H+ +CVV PQ G R + M
Sbjct: 354 TGIVVLARNPSLHPGDIRVVKAVDNAALRHLKNCVVLPQTGDRDVANM 401
>gi|452987327|gb|EME87083.1| hypothetical protein MYCFIDRAFT_202751 [Pseudocercospora fijiensis
CIRAD86]
Length = 1276
Score = 250 bits (639), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 181/558 (32%), Positives = 280/558 (50%), Gaps = 51/558 (9%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
LP+++ +++ + + G + +D +F + + A + ++ L+K+ KE YEP
Sbjct: 235 LPFKLRYQLEVCLSLGLLLECNIDRDFLKRL----AEMDLTRAVKVLEKVADNKERVYEP 290
Query: 229 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 288
Q + + ++ KP D + V VTPS +Y SNRV+R F+
Sbjct: 291 MTIFRLQNQVSVVTKKKP--------DYCTEIGSVVVTPSTIYAATMVRETSNRVIRQFK 342
Query: 289 RDIDNFLRISFIDEDLD-KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFE 347
D FLR+ F DE KI S+D D +++RI T+ +GI IGDR +E
Sbjct: 343 DYEDRFLRVKFTDERYKGKIWSSD---------DNRMNEVFSRIKRTMTHGIQIGDRHYE 393
Query: 348 FLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS 407
FLAF +SQ RE A+ FA LTA IREWMG F IR +AKY +RLGQ FS+++
Sbjct: 394 FLAFGNSQFREHGAYFFAPTEKLTAEMIREWMGRFSHIRVIAKYVSRLGQCFSTTRAIPH 453
Query: 408 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL---KDNPPSAFQIRYG 464
++++ V IE + Y F+DG G +S AR +A + ++N PSA Q R
Sbjct: 454 ----KVDLGRSVDIE--RNGYCFTDGAGTMSPFLARMIALHHNVPNSEENFPSAVQFRLA 507
Query: 465 GYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIW 523
G KGV+A DP + +R S K+ +E L++ S++ LN Q+I +LS LGI
Sbjct: 508 GCKGVLAVDPALKGFAIQIRPSQEKFPAEYHGLEICRISQFSTANLNMQIILVLSALGID 567
Query: 524 DEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNILKELLICGYKPDAEPFLSM 582
DE+F K R + + ++D KA E L+ + + T +L ++ G+ +PF+
Sbjct: 568 DEVFLGKMRAMLVDIKEAMSDERKALELLQKNIDYSQTTILLATMIFDGFMETKDPFMIT 627
Query: 583 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL--NYGQ-VFVQISGAGYRQLH-- 637
L+ +R+ L L+ K RI++ G + DET TL +Y + V A H
Sbjct: 628 CLRLWRSWCLKYLKEKARIYVEQGFFGLAVPDETGTLRGHYDKPVSADSDNADTSDEHDA 687
Query: 638 GESSLFSSSRSRQRF-------------IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 684
G + S + F ++ + ++A+NP LHPGDVR ++AV+ P LHH
Sbjct: 688 GSDEIASDEDLPEIFLQVPDPDAPGKYRVILSICILARNPSLHPGDVRKVRAVDKPELHH 747
Query: 685 MVDCVVFPQKGMRYILTM 702
+ D VV P G R + M
Sbjct: 748 LRDVVVIPTTGDRDLANM 765
>gi|260801457|ref|XP_002595612.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
gi|229280859|gb|EEN51624.1| hypothetical protein BRAFLDRAFT_64722 [Branchiostoma floridae]
Length = 1207
Score = 249 bits (637), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 167/452 (36%), Positives = 238/452 (52%), Gaps = 59/452 (13%)
Query: 251 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 310
+SL L YV RV VTP+ + F PEI NR+LR + + FLR+SF+DE K+
Sbjct: 278 MSLPATLRYVRRVIVTPTTLLFLQPEIMFENRMLRDYGEEF--FLRVSFLDEGFQKL--- 332
Query: 311 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 370
+G AT + I+ R+ + L+ G+ +G+R + FLA S+SQLR+ W F+
Sbjct: 333 ----QGGIATGLEEEDIFARVRNVLQTGVRVGERYYRFLAASNSQLRQHGVWFFSDDGKN 388
Query: 371 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS-VHMDEIEI--IPDVKIEIGKTK 427
TA IR MG+F R A Y AR+GQ FS+++ T++ V + +EI I + +
Sbjct: 389 TAESIRAEMGDFSGCRCPATYLARMGQCFSTTEPTVANVGNNAVEISDITGGYDPVNRKP 448
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMR 487
Y FSDGIGK+S + ARK + + R SM
Sbjct: 449 YCFSDGIGKISKDLARK--------------------------------GEIMQYRSSMN 476
Query: 488 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 547
K+ S +++ S FLNRQ+I++LS LG+ D +F++ Q+E + +L +
Sbjct: 477 KFWSLHDVIEICTTSHPGRLFLNRQVITILSQLGVPDIVFQQLQQERLFELADMFLLETS 536
Query: 548 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN-- 605
A EAL + + + LL G + EPF MLQ S + E+R + RI IP
Sbjct: 537 AAEALCQRAQMKGLP-YRRLLKMGVQLTTEPFFRSMLQKIYKSSVGEIRRRARIGIPPEY 595
Query: 606 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
GR M+G LDET TL YGQVFVQ + E + R +++G VVV + PC
Sbjct: 596 GRIMLGVLDETGTLEYGQVFVQYT---------EDIANQDGKVR---VLEGDVVVTRTPC 643
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
LHPGDVR L+A++VPAL+HMVD +VFP KG R
Sbjct: 644 LHPGDVRKLQAIDVPALYHMVDVIVFPAKGPR 675
>gi|346325393|gb|EGX94990.1| RNA-directed RNA polymerase (Sad-1) [Cordyceps militaris CM01]
Length = 1102
Score = 248 bits (632), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 171/559 (30%), Positives = 279/559 (49%), Gaps = 64/559 (11%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
I L + + +++ + V G + LD+ F + A + ++ LD + +
Sbjct: 132 IYLDFAVRYRLEVCVSRGYLREYALDAVFLEKL----ASLDVAKASRMLDYIADQELQVE 187
Query: 227 EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
+P + D K++ + +K P V +V +TP+ + P + SNRV+R
Sbjct: 188 DPMQIFEDA--KFLCAPAKKRIPHYC-----SLVLKVNITPTCLKLNLPNVESSNRVMRK 240
Query: 287 FRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+ D FLR+ F+ E + D+I + ++ R+L L GI IGDR
Sbjct: 241 YNNLHDRFLRVQFLSETESDRI----------AKDRYNNDDVWKRLLRALHKGIRIGDRT 290
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
+EFLAF +SQLRE S F L+ +IR+W+GNF IRN+AK+ AR+GQ FS+++E
Sbjct: 291 YEFLAFGNSQLREGSVTFFCPTAYLSCDDIRKWLGNFDHIRNIAKFGARIGQCFSTTREV 350
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-DNPPSAFQIRYG 464
+ + + +I D++ E FSDG+G +S + V + L PSAFQ R G
Sbjct: 351 RGIRVPTVRLIDDIETE----GECFSDGVGIISGLLGKLVVDEMKLDVVGEPSAFQFRMG 406
Query: 465 GYKGVVAADPTSSKK---LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
G KGV+A P K + +R S K+ +E L+++ +K LNRQ I +L LG
Sbjct: 407 GAKGVLAVWPREYAKHMEVCVRKSQIKFTTEANTLEIVKCAKTTTATLNRQTIIILEHLG 466
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFL 580
+ F + ++Q + +TD A + L + + + T I+ ELL ++ +PF+
Sbjct: 467 VSCGAFLELLNAHIKQYEEAMTDRTAAIDLLTKFVDENQTTVIIAELLKADFQ---DPFV 523
Query: 581 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL----------------NYGQV 624
+L+ +R+ L ++ K RI + +MGC+DET TL + Q+
Sbjct: 524 KNLLKLWRSWSLKLMKEKCRIHVEKSAFVMGCVDETGTLQGHSKKTEGSNTKRMDDLPQI 583
Query: 625 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 684
F+QIS YR + I++GL ++ +NP LH GD+RV++AV++ L H
Sbjct: 584 FLQISNRKYRN--------------KTTIIKGLCLIGRNPSLHAGDIRVVQAVDMQCLRH 629
Query: 685 MVDCVVFPQKGMRYILTML 703
+ D VVFP KG R + +ML
Sbjct: 630 LKDVVVFPSKGDRSLPSML 648
>gi|452837097|gb|EME39040.1| hypothetical protein DOTSEDRAFT_110589, partial [Dothistroma
septosporum NZE10]
Length = 1155
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 176/561 (31%), Positives = 286/561 (50%), Gaps = 68/561 (12%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYR---LVDPYRAPVSISCIEHALDKLYHLKE 223
+ LP+ + +++ + + G + + +F + ++P RA L+K+ ++
Sbjct: 326 VQLPFALRYQLEVCLSIGVLHEVNMSQDFLKRLAAMEPERAV-------KVLEKIADGRQ 378
Query: 224 CCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRV 283
Y+P L Q + + + +P+ + V VTPS ++F P + SNRV
Sbjct: 379 RYYDPYEILRLQSQVSVVEKKRPAY--------CTKIPAVTVTPSTLHFATPVLETSNRV 430
Query: 284 LRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGD 343
+R +++ D FLR+ F DE +H + P+ D + + +++RI + +G+ IGD
Sbjct: 431 VRQYQQYQDRFLRVKFRDE----LHKGKIFPQD----DHSESEVFSRISRAMTHGVKIGD 482
Query: 344 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 403
R +EFLAF SSQ RE A+ FAS LTAA+IR+WMGNF I+ VAKY ARLGQ FS+++
Sbjct: 483 RIYEFLAFGSSQFREHGAYFFASTAALTAADIRKWMGNFTHIKVVAKYCARLGQCFSTTR 542
Query: 404 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL---KDNPPSAFQ 460
H IE I D++ + + F+DG GK+S AR +A GL D+ PSAFQ
Sbjct: 543 SI--PHAVNIETISDIE----RNGHCFTDGSGKISPFLARLIAHHYGLPNSDDDHPSAFQ 596
Query: 461 IRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLST 519
R G KGV++ DP + +R S +K+ +E L++ S+Y +LN Q+I +LS
Sbjct: 597 FRLAGCKGVLSVDPALRGLTIQIRPSQQKFAAEAFGLEICRISQYSAAYLNMQIILVLSA 656
Query: 520 LGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNILKELLICGYKPDAEP 578
LG+ DE+F + R ++ D + KA L+ + + T L +++ G+ +P
Sbjct: 657 LGVPDEVFIARVRTMLKDFDEAMKSEDKALILLQKNIDYNQMTLTLASMIMDGFMETKDP 716
Query: 579 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-----------------NY 621
F + L+ +RA L L+ K R+ + G + DET L +
Sbjct: 717 FTTTCLRLWRAWSLKYLKEKARVLVEEGFFGIASPDETGILRGYSDDSPSVDEVQKDGDL 776
Query: 622 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
++F+QI + ++ G+ +A+NP LHPGDVRV++AV+VP
Sbjct: 777 PEIFLQIP--------------DPDTPGKYIVLLGVCALARNPSLHPGDVRVVRAVDVPE 822
Query: 682 LHHMVDCVVFPQKGMRYILTM 702
LHH + V+ P G R + M
Sbjct: 823 LHHKKNEVILPITGDRPLANM 843
>gi|213407476|ref|XP_002174509.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
gi|212002556|gb|EEB08216.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces japonicus
yFS275]
Length = 1213
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 154/470 (32%), Positives = 246/470 (52%), Gaps = 36/470 (7%)
Query: 243 RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 302
+++ S+ GL V +V +TP+ V + NRV+RHF + D FLRI +E
Sbjct: 434 QNQSSASGKKFTSGLNSVKKVCITPTTVKVMDNSLEAGNRVIRHFSQYNDRFLRIQITEE 493
Query: 303 DLD-KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
+ KI S + + S +Y R+ + +GI+IG FEFLAF +SQLRE A
Sbjct: 494 NTKRKIRSNPDALKQES--------VYARVYQLMSHGIIIGKTHFEFLAFGNSQLREHGA 545
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
+ FAS +A IR WMG+F +VAKYAAR+GQ FS++K+ + ++ + +
Sbjct: 546 YFFASGEDESADSIRNWMGDFSNNESVAKYAARMGQCFSTTKD-----LKRFQVKVEKRN 600
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS----- 476
+I + F+DG+G S ++ AS+ ++ PSA Q R GGYKGV++ P +
Sbjct: 601 DIIRNDSCFTDGVGMASLSVMKRTASEMDNEEMFPSAVQFRMGGYKGVLSLAPPTLLEYH 660
Query: 477 -SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 535
+ RDS K++S T L+V+ S++ LN QLI+LL LG+ +F + +
Sbjct: 661 KGNLVFTRDSQEKFKSNFTVLEVIKVSRFSHAHLNMQLITLLEGLGVPTSLFVDLAKNEL 720
Query: 536 RQLDAILTDPLKAQEAL-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 594
++L L DP +A L + +T IL +L+ CG+ + F ++ + +
Sbjct: 721 KELTISLKDPRRAVTLLRNHVDEYRSTLILADLIACGFMQRNDSFTKNLINLYFEWVVRT 780
Query: 595 LRTKTRIFIPNGRSMMGCLDETRTL--NYG-------QVFVQISGAGYRQLHGESSLFSS 645
++ K R+ + G +MG DET TL +Y +VF+QI+ + ++++
Sbjct: 781 IKEKQRLRVKEGAFLMGVADETGTLKGHYNDSVLPIPEVFIQITDPSK---NADATVTGK 837
Query: 646 SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
++ I+ GL VV +NP LHPGDVRV +AV L H+ + +VFP G
Sbjct: 838 IKTT---IIMGLCVVVRNPALHPGDVRVCRAVRCNELLHLKNVIVFPTTG 884
>gi|156379597|ref|XP_001631543.1| predicted protein [Nematostella vectensis]
gi|156218585|gb|EDO39480.1| predicted protein [Nematostella vectensis]
Length = 523
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/326 (42%), Positives = 188/326 (57%), Gaps = 11/326 (3%)
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 434
IR WMG+F IR V Y +R+GQ FS+S +T+ + +D IE + I+ + Y F+DGI
Sbjct: 1 IRRWMGDFSSIRCVGTYVSRMGQCFSTSLDTVGITVDGIECLEKDDIQTEEKSYTFTDGI 60
Query: 435 GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESEL 493
G +S++ ARKV K G KD PSAFQIRY G KGV+A D + K+L R SMRK++S
Sbjct: 61 GGISSQLARKVTIKIG-KDFIPSAFQIRYAGCKGVLAVDKSLGEKQLFCRPSMRKFQSSH 119
Query: 494 TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE 553
+L+VL S+ Q +LN Q+I LLS LGI D++F + + L L D A +
Sbjct: 120 RRLEVLQTSRPQAVYLNHQVIMLLSNLGISDDVFMSLLEKTLDNLGGTLLDERLAMR--Q 177
Query: 554 LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP--NGRSMMG 611
L S + ++L G EPF + +L++L K R+ +P + R MMG
Sbjct: 178 LSSAVKRGISYRDLFDAGVHLTVEPFFRSLNAAVYRDRLMQLLMKARMQLPLESARLMMG 237
Query: 612 CLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 671
+DET L YGQVFVQ S A + S R +++G VVV +NPCLHPGDV
Sbjct: 238 VVDETGVLEYGQVFVQYSAASNDPRSDKEFELSDKR-----VLKGPVVVTRNPCLHPGDV 292
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGMR 697
R L A++ P L H+VDCVVFP+ G R
Sbjct: 293 RRLVAIDTPKLRHLVDCVVFPKTGQR 318
>gi|212537491|ref|XP_002148901.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210068643|gb|EEA22734.1| RNA-dependent RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1207
Score = 235 bits (599), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 176/586 (30%), Positives = 276/586 (47%), Gaps = 104/586 (17%)
Query: 169 LPYEILFKINLLVQNG-----------------------CVAGPLLDSNFYRL--VDPY- 202
P+ + F++ +LV NG VA ++ RL DP+
Sbjct: 317 FPFAVQFQLQMLVSNGELPPEKVTTLFPYVNTLLARKRPLVAAKIIKGLPRRLHHPDPHA 376
Query: 203 -RAPVSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVH 261
A VS+ I L+K+ ++ Y +P P L + +H
Sbjct: 377 DSADVSLDTIIDTLEKIEEMQALEY-----------------LQPGQPGY-LHYNQMEIH 418
Query: 262 RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH---STDLSPRGSS 318
R+ VTP+ +Y GP + NRVLR +R D F+R+ FI+E D + S++L P
Sbjct: 419 RLSVTPTGLYLDGPNVEAENRVLRKYRNQSDQFIRVRFIEESGDPLMYDISSNLDP---- 474
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG------LTA 372
I+ R LR+G++I DR + FL FS S LR S W A + +T
Sbjct: 475 --------IFDRFREVLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHDSVTGEFITV 526
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 432
++ +G+F I+ +K+AARLGQ+FS + ++SV D ++ I DV+ + VFSD
Sbjct: 527 NKLISKLGDFDHIKAPSKFAARLGQTFSDTLTSISVDKDMVKRIDDVE----RNGRVFSD 582
Query: 433 GIGKVSAEFARKVASKCGLKDNP------PSAFQIRYGGYKGVVAADPT-SSKKLSLRDS 485
G G +S E ++ +D P P+ FQ+R G KG+++ DPT + LRDS
Sbjct: 583 GCGTISKEILWRI-----YRDYPRNAAVRPTVFQVRISGAKGMLSLDPTLKGPTICLRDS 637
Query: 486 MRKYESELTKLDVLAWSKYQ--PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 543
M K+ +E + S PC+LN LI +L LG+ ++F + QRE V L +
Sbjct: 638 MIKFRAEADNNIEICGSGIHSLPCYLNAPLIKILEDLGVPRDLFLELQREEVESLRQTVR 697
Query: 544 DPLKAQEALELMSPGENTN---ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
P A L+ ++T ++ L G + + FL ++ KL +L+ K R
Sbjct: 698 SPQHAAVFLDQAHISKSTRLSWLITLLQSMGVNYNQDGFLKRAVELVILMKLRDLKYKAR 757
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
I +P+G ++ G +DET L G++FV I + R+ +VQ V++
Sbjct: 758 ILVPDGVTLYGIMDETGYLKEGEIFVPI--------------LNEETKRRDILVQDDVLI 803
Query: 661 AKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
++P HPGDV++ AVNVP L + +CVVF QKG R + + L
Sbjct: 804 TRSPAFHPGDVQLANAVNVPEDSPLRKLHNCVVFSQKGTRDLPSQL 849
>gi|19114207|ref|NP_593295.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe 972h-]
gi|59800170|sp|O14227.1|RDR1_SCHPO RecName: Full=RNA-dependent RNA polymerase 1; Short=Protein rdp1
gi|2330856|emb|CAB11093.1| RNA-directed RNA polymerase Rdp1 [Schizosaccharomyces pombe]
Length = 1215
Score = 235 bits (599), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 148/461 (32%), Positives = 245/461 (53%), Gaps = 34/461 (7%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
+++ ++ VTP+ + + NRV+R+F+ + F+R+ DE + RG
Sbjct: 452 IHIKKLYVTPTTLRIVEDSLEAGNRVIRNFKDFANRFMRVQITDEYYKQ------KIRGG 505
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE 377
S ++Y+RI L GI +G++ +EFLAF +SQLRE A+ FAS L A +IRE
Sbjct: 506 S-DGFRNEKLYSRIQQLLTYGIKVGNQIYEFLAFGNSQLREHGAYFFASGSDLNAKQIRE 564
Query: 378 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 437
WMG+F EI +V+KYAAR+GQ FS++KE ++ + ++ +I + + F+DG+G
Sbjct: 565 WMGDFSEINSVSKYAARMGQCFSTTKE-----INRFCVDISLQDDIVRNNHCFTDGVGMA 619
Query: 438 SAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL------RDSMRKYES 491
S R+++ + D PSAFQ R GGYKGV++ P + + R S K++S
Sbjct: 620 SLSVIRRLSLEVKNHDMFPSAFQFRMGGYKGVLSLAPPTKLEYHQGNLVFPRRSQDKFKS 679
Query: 492 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 551
+ L+V+ S++ LN QLI+LL LG+ +F + R + +++ + K+
Sbjct: 680 FHSTLEVIKISRFSNAHLNMQLITLLEGLGVEKTVFLELTRSQLSKMNESINSKQKSILM 739
Query: 552 L-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
L + + +T I+ + + G+ + F +L + L ++ K ++ +P G ++
Sbjct: 740 LRDNVDEYHSTLIIADFIQAGFLERDDAFTENLLNLYYEWVLRLIKEKQKVSVPKGAYLL 799
Query: 611 GCLDETRT---------LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
G DET T L+ ++F+QI+ +S+ + + R IV GL +VA
Sbjct: 800 GVADETGTLKGHYDDAVLSVPEIFIQITDTS-----TSFGSYSTGKLKTRVIV-GLCIVA 853
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
+NP LHPGDVRV KAV L H+ + +VFP G R I M
Sbjct: 854 RNPSLHPGDVRVCKAVRCDELMHLKNVIVFPTTGDRSIPAM 894
>gi|303322200|ref|XP_003071093.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240110792|gb|EER28948.1| RNA-directed RNA polymerase, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 1195
Score = 232 bits (591), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 209/734 (28%), Positives = 334/734 (45%), Gaps = 92/734 (12%)
Query: 14 TVNFGFGMRKINFLLSHLG--EEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIF 71
T N FG + + ++ +Y LE Y N+ I + + Q T +L + APR +
Sbjct: 163 TGNMLFGKSSLRVTMKNVAPSTDYYLEFSYLNVQSIHIGTSQ-QATMTILTDI--APRYY 219
Query: 72 QKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQ---STGLCMELPYRLELPD 128
+ + N + +VP + V NF G ++G+C YR EL
Sbjct: 220 ISDPMEKAKAQTAKLLNRYAQVPTKRRV-------GNFGGDHAVTSGICFS--YRFELW- 269
Query: 129 FKENFAYYKESEDRFVLETGS-------------AYSRSLDLVPIVGPPDGIALPYEILF 175
++ A + +D + G+ + DL V +P+ + F
Sbjct: 270 YRHTSAIRRLRDDDHLPPIGTWADRRVVYRYPFTVFKEQFDLFLEVQ-----QIPFTLKF 324
Query: 176 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY----------HLKECC 225
+I LV NG ++ P+ FY + R + + AL KL H +
Sbjct: 325 QIAKLVWNGEMS-PMKALQFYPFIKRSRDIHGLEVVIEALKKLTTNLEYPSPDTHESDVD 383
Query: 226 YEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 285
L DQ + + + + ++ V VHR QVTPS Y GP I NRVLR
Sbjct: 384 VIALGTLLDQMIERVDFQDSTRLNLVHPNN--VKVHRAQVTPSGTYLYGPNIETKNRVLR 441
Query: 286 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+ I+NFLR+ F+DE D ++ P+ S + R L+ GI IG
Sbjct: 442 QYNDHINNFLRVEFVDETGDPVY---FDPQAS-----LHNIFHERFKGVLKQGIKIGGCH 493
Query: 346 FEFLAFSSSQLRESSAWMFA-----SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 400
F FL FS S LR + W A S A I + +G+F I + AK AAR+GQ+FS
Sbjct: 494 FSFLGFSHSSLRSQTCWFVAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFS 553
Query: 401 SSKETLSVHMDEIEII-PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSA 458
++ ++++ D + + PDVK + VFSDG+G S K+ S+ L++ P+
Sbjct: 554 ETQTSIAIPEDAVFLNEPDVK----RNGRVFSDGVGTFSPRLLYKIWSEYALREKVKPTV 609
Query: 459 FQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELT-KLDVLAWS-KYQPCFLNRQLIS 515
FQIR+ G KG+V+ D ++L LR+SM K+ + ++V + P +LN Q+I
Sbjct: 610 FQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFSARRAFNIEVCGSGIRALPFYLNAQIIK 669
Query: 516 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI--LKELLI-CGY 572
+L LG+ F K Q + + +L ++ K + LE S + + L E+L G+
Sbjct: 670 ILEDLGVPPTGFIKLQSDEIERLLSVGKSASKTSQFLEESSIAKEVRVPWLIEILHGLGF 729
Query: 573 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 632
D +PFL ++Q K+ +L+ + RI +P ++ G +DET LN G++F
Sbjct: 730 HHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIFC------ 783
Query: 633 YRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCV 689
F + + +V+ V+V + P LHPGDV+ KAV+VP L + +CV
Sbjct: 784 ---------TFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCV 834
Query: 690 VFPQKGMRYILTML 703
+F Q G R + +ML
Sbjct: 835 IFSQHGFRDLPSML 848
>gi|407917163|gb|EKG10484.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina
phaseolina MS6]
Length = 1221
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 156/461 (33%), Positives = 250/461 (54%), Gaps = 36/461 (7%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
+ +HRV +TP+ Y GPE VSNRVLR + DNFLR+ F+DE+ D I P+
Sbjct: 426 IALIHRVIITPAGTYLEGPEPEVSNRVLRKYPEHTDNFLRVQFVDEEGDAIR---YEPK- 481
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGLTAA 373
+S +I + R S L I IG F FL FS S LR + W F + L AA
Sbjct: 482 TSLGEI----FHNRFKSVLDGEINIGGHSFAFLGFSHSSLRSQTCWFMAPFVQKLSLIAA 537
Query: 374 -EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 432
E+ + +G+F +IR+ AK AAR+GQ+FS + T++V+ + I++I DV+ + G ++FSD
Sbjct: 538 QEVIKGLGDFSKIRSPAKCAARIGQAFSDTSGTVTVNEEIIKMIDDVRNDRG---HIFSD 594
Query: 433 GIGKVSAEFARKVASKC-GLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYE 490
G+GK+S + ++V + + P+ QIR+GG KGVV+ D ++L LR SM K+
Sbjct: 595 GVGKISYKLLKRVWKEYQQARGQRPTCLQIRFGGAKGVVSLDDRLPGEQLVLRPSMVKFY 654
Query: 491 SELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 548
T + + ++P +LNRQ I +L LG+ ++F Q V QL I P+ A
Sbjct: 655 GAGTWNIEICGANFRPLPMYLNRQFIKILEDLGVPAQVFLDLQSAMVEQLRRITKSPVNA 714
Query: 549 QEALELMSPGENT---NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 605
LE G+ T ++L+ L G+ + + FLS +++ S+L +++ ++RI +
Sbjct: 715 ATFLEHARVGQATRMPHLLRMLDELGFSFNEDEFLSHVVEIAALSQLRDIKHRSRIQVDR 774
Query: 606 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
G ++ G +DET L +++ I G + R ++ + G V+V ++P
Sbjct: 775 GVTLYGIMDETGFLGEDEIYCVIERIG-----------DNGRPKRTVLSGGEVIVTRSPA 823
Query: 666 LHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRYILTML 703
+HPGDV+ +AV+VP L + + VVF KG R + + L
Sbjct: 824 MHPGDVQKARAVDVPPDSPLQALSNVVVFSSKGQRDLPSQL 864
>gi|242809058|ref|XP_002485290.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218715915|gb|EED15337.1| RNA-dependent RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1207
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 175/570 (30%), Positives = 280/570 (49%), Gaps = 72/570 (12%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNF--YRLVDPYRAPVSISCIEHALDKLYHLK---- 222
P+ + F++ +LV NG + + S F R + + P+ ++ I L + H
Sbjct: 315 FPFAVQFQLRMLVSNGELPPEKVISLFPYVRTLLARKRPLVVAKILKGLPRRLHHPDPHA 374
Query: 223 -------ECCYEPSRWLTD-QYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCG 274
E E + + + Q +Y+ +P P L + +HR+ VTP+ +Y G
Sbjct: 375 DSADVSLEAIIETLKEIEEMQALEYV----QPGQPGY-LHHNQMEIHRLSVTPTGIYLDG 429
Query: 275 PEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT-RILS 333
P + NRVLR +R D F+R+ FI+E D + D+ SS D RI+ R
Sbjct: 430 PNVEAENRVLRKYRHQSDYFIRVRFIEESGDPM-MYDI----SSNLD----RIFKDRFGE 480
Query: 334 TLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG-----LTAAEIREWMGNFREIRNV 388
LR+G++I DR + FL FS S LR S W A + +T + +G+F IR+
Sbjct: 481 VLRDGVIIADRHYRFLGFSHSSLRSRSCWFMAEFHDSEGQLITVNSLISKLGDFSHIRSP 540
Query: 389 AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASK 448
AK+AARLGQ+FS + ++SV D ++ I DV+ + VFSDG G +S E ++
Sbjct: 541 AKFAARLGQTFSDTLTSISVDRDMVKRIDDVE----RNGRVFSDGCGTISKEVLWRI--- 593
Query: 449 CGLKDNP------PSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAW 501
+D P P+ FQ+R G KG+++ DP + LRDSM K+ +E +
Sbjct: 594 --YRDYPRNAAVRPTVFQVRISGAKGMLSLDPRLKGPTICLRDSMIKFRAEADHNIEICG 651
Query: 502 SKYQ--PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 559
S PC+LN LI +L LG+ ++F + QRE V+ L + P +A L+ +
Sbjct: 652 SGIHSLPCYLNAPLIKILEDLGVARDLFLELQREEVQNLRLAIRSPRQAASFLDQAHITK 711
Query: 560 NTN---ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 616
+T ++ L G + + FL ++ KL +L+ + RI +P ++ G +DET
Sbjct: 712 STRLSWLITVLQSMGLNYNQDKFLKRAVELVILMKLRDLKYRARILVPEAVTLYGIMDET 771
Query: 617 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 676
L G++FV I + R+ +VQ V++ ++P HPGDV+++ A
Sbjct: 772 GYLQEGEIFVPI--------------LNEVTKRRNILVQNKVLITRSPAFHPGDVQMVNA 817
Query: 677 VNVPA---LHHMVDCVVFPQKGMRYILTML 703
VNVP L + +CVVF QKG R + + L
Sbjct: 818 VNVPEASPLRKLHNCVVFSQKGERDLPSQL 847
>gi|119196681|ref|XP_001248944.1| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1155
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 207/731 (28%), Positives = 335/731 (45%), Gaps = 86/731 (11%)
Query: 14 TVNFGFGMRKINFLLSHLG--EEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIF 71
T N FG + + ++ +Y LE Y N+ I + + Q T +L + APR +
Sbjct: 163 TGNMLFGKSSLRVTMKNVAPSTDYYLEFSYLNVQSIHIGTSQ-QATMTILTDI--APRYY 219
Query: 72 QKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKE 131
+ + N + +VP + R +F + I ++G+C YR EL ++
Sbjct: 220 ISDPMEKAKAQTAKLLNRYAQVPTKR--RVGNFGGDHAI--TSGICFS--YRFELW-YRH 272
Query: 132 NFAYYKESEDRFVLETGS-------------AYSRSLDLVPIVGPPDGIALPYEILFKIN 178
A + +D + G+ + DL V +P+ + F+I
Sbjct: 273 TSAIRRLRDDDHLPPIGTWADRRVVYRYPFTVFKEQFDLFLEVQ-----QIPFTLKFQIA 327
Query: 179 LLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY----------HLKECCYEP 228
LV NG ++ P+ FY + R + + AL KL H +
Sbjct: 328 KLVWNGEMS-PMKALQFYPFIKRSRDIHGLEVVIEALKKLTTNLEYPSPDTHESDVDVIA 386
Query: 229 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 288
L DQ + + + + ++ V VHR QVTPS Y GP I NRVLR +
Sbjct: 387 LGTLLDQMIERVDFQDSTRLNLVHPNN--VKVHRAQVTPSGTYLYGPNIETKNRVLRQYN 444
Query: 289 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 348
I+NFLR+ F+DE D ++ P+ S + R L+ GI IG F F
Sbjct: 445 DHINNFLRVEFVDETGDPVY---FDPQAS-----LHNIFHERFKGVLKQGIKIGGCHFSF 496
Query: 349 LAFSSSQLRESSAWMFA-----SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 403
L FS S LR + W A S A I + +G+F I + AK AAR+GQ+FS ++
Sbjct: 497 LGFSHSSLRSQTCWFVAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQ 556
Query: 404 ETLSVHMDEIEII-PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQI 461
++++ D + + PD+K + VFSDG+G S K+ S+ L++ P+ FQI
Sbjct: 557 TSIAIPEDAVFLNEPDMK----RNGRVFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQI 612
Query: 462 RYGGYKGVVAADPT-SSKKLSLRDSMRKYESELT-KLDVLAWS-KYQPCFLNRQLISLLS 518
R+ G KG+V+ D ++L LR+SM K+ + ++V + P +LN Q+I +L
Sbjct: 613 RFAGAKGMVSLDTRLKGEQLRLRESMVKFSARRAFNIEVCGSGIRALPFYLNAQIIKILE 672
Query: 519 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI--LKELLI-CGYKPD 575
LG+ F K Q + + +L ++ K + LE S + + L E+L G+ D
Sbjct: 673 DLGVPPTGFIKLQSDEIERLLSVGKSASKTSQFLEESSIAKEVRVPWLIEILHGLGFHHD 732
Query: 576 AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQ 635
+PFL ++Q K+ +L+ + RI +P ++ G +DET LN G++F
Sbjct: 733 QDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIFC--------- 783
Query: 636 LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFP 692
F + + +V+ V+V + P LHPGDV+ KAV+VP L + +CV+F
Sbjct: 784 ------TFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFS 837
Query: 693 QKGMRYILTML 703
Q G R + +ML
Sbjct: 838 QHGFRDLPSML 848
>gi|320034943|gb|EFW16885.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 1195
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 208/734 (28%), Positives = 334/734 (45%), Gaps = 92/734 (12%)
Query: 14 TVNFGFGMRKINFLLSHLG--EEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIF 71
T N FG + + ++ +Y LE Y N+ I + + Q T +L + APR +
Sbjct: 163 TGNMLFGKSSLRVTMKNVAPSTDYYLEFSYLNVQSIHIGTSQ-QATMTILTDI--APRYY 219
Query: 72 QKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQ---STGLCMELPYRLELPD 128
+ + N + +VP + V NF G ++G+C YR EL
Sbjct: 220 ISDPMEKAKAQTAKLLNRYAQVPTKRRV-------GNFGGDHAVTSGICFS--YRFELW- 269
Query: 129 FKENFAYYKESEDRFVLETGS-------------AYSRSLDLVPIVGPPDGIALPYEILF 175
++ A + +D + G+ + DL V +P+ + F
Sbjct: 270 YRHTSAIRRLRDDDHLPPIGTWADRRVVYRYPFTVFKEQFDLFLEVQ-----QIPFTLKF 324
Query: 176 KINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY----------HLKECC 225
+I LV NG ++ P+ FY + R + + AL KL H +
Sbjct: 325 QIAKLVWNGEMS-PMKALQFYPFIKRSRDIHGLEVVIEALKKLTTNLEYPSPDTHESDVD 383
Query: 226 YEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 285
L DQ + + + + ++ V VHR QVTPS Y GP I NRVLR
Sbjct: 384 VIALGTLLDQMIERVDFQDSTRLNLVHPNN--VKVHRAQVTPSGTYLYGPNIETKNRVLR 441
Query: 286 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+ I+NFLR+ F+DE D ++ P+ S + R L+ GI IG
Sbjct: 442 QYNDHINNFLRVEFVDETGDPVY---FDPQAS-----LHNIFHERFKGVLKQGIKIGGCH 493
Query: 346 FEFLAFSSSQLRESSAWMFA-----SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 400
F FL FS S LR + W A S A I + +G+F I + AK AAR+GQ+FS
Sbjct: 494 FSFLGFSHSSLRSQTCWFVAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFS 553
Query: 401 SSKETLSVHMDEIEII-PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSA 458
++ ++++ D + + PD+K + VFSDG+G S K+ S+ L++ P+
Sbjct: 554 ETQTSIAIPEDAVFLNEPDMK----RNGRVFSDGVGTFSPRLLYKIWSEYALREKVKPTV 609
Query: 459 FQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELT-KLDVLAWS-KYQPCFLNRQLIS 515
FQIR+ G KG+V+ D ++L LR+SM K+ + ++V + P +LN Q+I
Sbjct: 610 FQIRFAGAKGMVSLDTRLKGEQLRLRESMVKFSARRAFNIEVCGSGIRALPFYLNAQIIK 669
Query: 516 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI--LKELLI-CGY 572
+L LG+ F K Q + + +L ++ K + LE S + + L E+L G+
Sbjct: 670 ILEDLGVPPTGFIKLQSDEIERLLSVGKSASKTSQFLEESSIAKEVRVPWLIEILHGLGF 729
Query: 573 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 632
D +PFL ++Q K+ +L+ + RI +P ++ G +DET LN G++F
Sbjct: 730 HHDQDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIFC------ 783
Query: 633 YRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCV 689
F + + +V+ V+V + P LHPGDV+ KAV+VP L + +CV
Sbjct: 784 ---------TFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCV 834
Query: 690 VFPQKGMRYILTML 703
+F Q G R + +ML
Sbjct: 835 IFSQHGFRDLPSML 848
>gi|392861850|gb|EAS37560.2| hypothetical protein CIMG_02715 [Coccidioides immitis RS]
Length = 1195
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 207/731 (28%), Positives = 335/731 (45%), Gaps = 86/731 (11%)
Query: 14 TVNFGFGMRKINFLLSHLG--EEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIF 71
T N FG + + ++ +Y LE Y N+ I + + Q T +L + APR +
Sbjct: 163 TGNMLFGKSSLRVTMKNVAPSTDYYLEFSYLNVQSIHIGTSQ-QATMTILTDI--APRYY 219
Query: 72 QKGIRSPDLLYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKE 131
+ + N + +VP + R +F + I ++G+C YR EL ++
Sbjct: 220 ISDPMEKAKAQTAKLLNRYAQVPTKR--RVGNFGGDHAI--TSGICFS--YRFELW-YRH 272
Query: 132 NFAYYKESEDRFVLETGS-------------AYSRSLDLVPIVGPPDGIALPYEILFKIN 178
A + +D + G+ + DL V +P+ + F+I
Sbjct: 273 TSAIRRLRDDDHLPPIGTWADRRVVYRYPFTVFKEQFDLFLEVQ-----QIPFTLKFQIA 327
Query: 179 LLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY----------HLKECCYEP 228
LV NG ++ P+ FY + R + + AL KL H +
Sbjct: 328 KLVWNGEMS-PMKALQFYPFIKRSRDIHGLEVVIEALKKLTTNLEYPSPDTHESDVDVIA 386
Query: 229 SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFR 288
L DQ + + + + ++ V VHR QVTPS Y GP I NRVLR +
Sbjct: 387 LGTLLDQMIERVDFQDSTRLNLVHPNN--VKVHRAQVTPSGTYLYGPNIETKNRVLRQYN 444
Query: 289 RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEF 348
I+NFLR+ F+DE D ++ P+ S + R L+ GI IG F F
Sbjct: 445 DHINNFLRVEFVDETGDPVY---FDPQAS-----LHNIFHERFKGVLKQGIKIGGCHFSF 496
Query: 349 LAFSSSQLRESSAWMFA-----SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 403
L FS S LR + W A S A I + +G+F I + AK AAR+GQ+FS ++
Sbjct: 497 LGFSHSSLRSQTCWFVAPFTTSSGERFDAQSIIQGLGSFSHIYSPAKLAARIGQTFSETQ 556
Query: 404 ETLSVHMDEIEII-PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQI 461
++++ D + + PD+K + VFSDG+G S K+ S+ L++ P+ FQI
Sbjct: 557 TSIAIPEDAVFLNEPDMK----RNGRVFSDGVGTFSPRLLYKIWSEYALREKVKPTVFQI 612
Query: 462 RYGGYKGVVAADPT-SSKKLSLRDSMRKYESELT-KLDVLAWS-KYQPCFLNRQLISLLS 518
R+ G KG+V+ D ++L LR+SM K+ + ++V + P +LN Q+I +L
Sbjct: 613 RFAGAKGMVSLDTRLKGEQLRLRESMVKFSARRAFNIEVCGSGIRALPFYLNAQIIKILE 672
Query: 519 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI--LKELLI-CGYKPD 575
LG+ F K Q + + +L ++ K + LE S + + L E+L G+ D
Sbjct: 673 DLGVPPTGFIKLQSDEIERLLSVGKSASKTSQFLEESSIAKEVRVPWLIEILHGLGFHHD 732
Query: 576 AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQ 635
+PFL ++Q K+ +L+ + RI +P ++ G +DET LN G++F
Sbjct: 733 QDPFLRSVVQLAIFFKMRDLKYRARIRVPEAVTLYGIMDETGYLNEGEIFC--------- 783
Query: 636 LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFP 692
F + + +V+ V+V + P LHPGDV+ KAV+VP L + +CV+F
Sbjct: 784 ------TFLNEEGGREILVRDQVIVTRAPALHPGDVQYAKAVDVPENSPLRSLHNCVIFS 837
Query: 693 QKGMRYILTML 703
Q G R + +ML
Sbjct: 838 QHGFRDLPSML 848
>gi|403346586|gb|EJY72692.1| Rna-dependent RNA polymerase [Oxytricha trifallax]
Length = 1470
Score = 224 bits (571), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 154/481 (32%), Positives = 246/481 (51%), Gaps = 64/481 (13%)
Query: 262 RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATD 321
R+ +TP+ Y+ + +NRV+R +R + F+R+SF++E L+K G +D
Sbjct: 561 RLFITPTLDYYQPAYEDETNRVIRQYRDHLSRFVRVSFVNEYLEK---------GYYFSD 611
Query: 322 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR--------YGLTAA 373
+ + L NGI +G+ +FL++S+SQ++ S WM + L
Sbjct: 612 -QMNWLLGYLHHVLVNGIQLGNYVLKFLSYSNSQIKNHSCWMLVESLVPNKDFDFPLNEN 670
Query: 374 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSD 432
I MG+F + +N+ K AR GQ FS++K L + E+ +PDVK + ++F+D
Sbjct: 671 IIMRSMGDFSQEKNMLKRYARRGQCFSTTKFILQLDKSEVTYNLPDVK----RNGFIFTD 726
Query: 433 GIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES 491
G G +S E A+ +A + K + SAFQIR+GG KGV+ +P +++ LRDS K++S
Sbjct: 727 GCGYISPELAQLIAEQFSFKRS--SAFQIRFGGTKGVLMLNPRLEGRQIQLRDSQIKFQS 784
Query: 492 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR--QLDAILTDPLK-A 548
L+V+ Y FLNRQ+I L++ LG+ + +F + QR+A Q+ I + +K
Sbjct: 785 NDLGLNVVRCGTYSQGFLNRQIIILMNCLGVPESVFLELQRKAKEYAQVQEIYNNLIKKT 844
Query: 549 QEALELMSPGENTN----------------------ILKELLICGYKPDAEPFLSMMLQT 586
+A++ +N + LK L+CGY +P S +L T
Sbjct: 845 SKAIKAFKLSQNKSKSLQQITKLINLSLGPSKWFEQSLKTALLCGYNIPNDPIFSSILYT 904
Query: 587 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR----------QL 636
+ S + L+ K RI IP+ ++G +DE L +VF+Q+ Y L
Sbjct: 905 MQLSSFMNLKKKARIIIPDSCVLLGIVDEFGILEEDEVFIQVKQDNYSLKKKPWLWDINL 964
Query: 637 HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 696
+ + L S+ Q I Q V+V +NPC HPGD+R+LKAVN P L H+ + VVF KG
Sbjct: 965 NNQEELEKDSKPLQ--ICQD-VIVTRNPCTHPGDIRLLKAVNKPELSHLFNVVVFSSKGE 1021
Query: 697 R 697
R
Sbjct: 1022 R 1022
>gi|440476070|gb|ELQ44707.1| RNA-dependent rna polymerase [Magnaporthe oryzae Y34]
gi|440486893|gb|ELQ66719.1| RNA-dependent rna polymerase [Magnaporthe oryzae P131]
Length = 1338
Score = 224 bits (570), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 171/574 (29%), Positives = 276/574 (48%), Gaps = 63/574 (10%)
Query: 166 GIALPYEILFKINLLVQNG----CVAGPLLDSNFYRLVDPY---RAPVSISCIEHALDKL 218
G +LP+ LF + L NG +L F R + R ++ ++ +D
Sbjct: 345 GKSLPHSHLFVLQALFYNGYLHPATVLEILHQLFRRFYEDRLSGRTFIAPEAVKSLMDA- 403
Query: 219 YHLKECCYEPSRWLTDQY------RKYMTSRSKPSSPAISLDDG-------LVYVHRVQV 265
EC PS + +Y K++ +++ L G L +++RV V
Sbjct: 404 ----ECIPWPSPYEDPEYFEVSSLMKWIYEKNEEFQGGFDLRTGQLRQNSNLTHIYRVVV 459
Query: 266 TPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRT 325
TP+R+ GPEI NRVLR + + D F+R+ F DE+ I SP+ I+
Sbjct: 460 TPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDIR---FSPK------ISYD 510
Query: 326 RIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL----TAAEIREWMGN 381
R+Y+R L L GI I R + FL FS S LR SAW A + T A I + +G
Sbjct: 511 RVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQHTHASIIKSLGE 570
Query: 382 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII---PDVKIEIGKTKYVFSDGIGKVS 438
F I+ AK AAR+GQ+FS + + + ++E++ PD+ G VFSDG+GK+S
Sbjct: 571 FSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDITNRDGSR--VFSDGVGKIS 628
Query: 439 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES-ELTKL 496
+ +K N P+ FQ+R+GG KG++A D T K+ RDSM K+ES ++ +L
Sbjct: 629 ESMMHIIWENIPMKKNAPTCFQVRWGGAKGMLALDMTLKGTKVCFRDSMTKFESDDVHQL 688
Query: 497 DVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 555
++ + SK P LNRQ+I +L +G F + Q +++L +I L+
Sbjct: 689 EICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQELRSITASAYNTWHFLDAQ 748
Query: 556 SPGENTNILKELLIC---GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 612
+ G+ + K + G + F+ +++ +L L+ K RI + G+++ G
Sbjct: 749 NVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRLLKHKARIPVKYGKTLFGI 808
Query: 613 LDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 672
+DET L G+V + G+ Q GE + +V+V ++P LHPGD++
Sbjct: 809 IDETGYLREGEVVISF---GFSQT-GEDQPTPPQDGQ-------IVIVTRSPALHPGDIQ 857
Query: 673 VLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
+ K V P H H ++C++F Q G R + + L
Sbjct: 858 IAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQL 891
>gi|389628880|ref|XP_003712093.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351644425|gb|EHA52286.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1292
Score = 223 bits (569), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 172/577 (29%), Positives = 276/577 (47%), Gaps = 69/577 (11%)
Query: 166 GIALPYEILFKINLLVQNG----CVAGPLLDSNFYRLVD------PYRAPVSISCIEHAL 215
G +LP+ LF + L NG +L F R + + AP ++ + A
Sbjct: 345 GKSLPHSHLFVLQALFYNGYLHPATVLEILHQLFRRFYEDRLSGRTFIAPEAVKSLMDA- 403
Query: 216 DKLYHLKECCYEPSRWLTDQY------RKYMTSRSKPSSPAISLDDG-------LVYVHR 262
EC PS + +Y K++ +++ L G L +++R
Sbjct: 404 -------ECIPWPSPYEDPEYFEVSSLMKWIYEKNEEFQGGFDLRTGQLRQNSNLTHIYR 456
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 322
V VTP+R+ GPEI NRVLR + + D F+R+ F DE+ I SP+ I
Sbjct: 457 VVVTPTRITLHGPEIENKNRVLRKYPKHQDCFVRVQFCDENTQDIR---FSPK------I 507
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL----TAAEIREW 378
+ R+Y+R L L GI I R + FL FS S LR SAW A + T A I +
Sbjct: 508 SYDRVYSRFLDVLNRGIQIAGRVYNFLGFSHSSLRTHSAWFSAPFFDQGSQHTHASIIKS 567
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII---PDVKIEIGKTKYVFSDGIG 435
+G F I+ AK AAR+GQ+FS + + + ++E++ PD+ G VFSDG+G
Sbjct: 568 LGEFSSIQCPAKCAARIGQAFSETPSVVDLRDHDVEVVTHFPDITNRDGSR--VFSDGVG 625
Query: 436 KVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES-EL 493
K+S + +K N P+ FQ+R+GG KG++A D T K+ RDSM K+ES ++
Sbjct: 626 KISESMMHIIWENIPMKKNAPTCFQVRWGGAKGMLALDMTLKGTKVCFRDSMTKFESDDV 685
Query: 494 TKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
+L++ + SK P LNRQ+I +L +G F + Q +++L +I L
Sbjct: 686 HQLEICDSGSKPIPLVLNRQMIKILEDMGTDRSWFMRLQSYRLQELRSITASAYNTWHFL 745
Query: 553 ELMSPGENTNILKELLIC---GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
+ + G+ + K + G + F+ +++ +L L+ K RI + G+++
Sbjct: 746 DAQNVGQAIKLGKFINFADKHGMDYRTDDFMRSVVEAVVLRELRLLKHKARIPVKYGKTL 805
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 669
G +DET L G+V + G+ Q GE + +V+V ++P LHPG
Sbjct: 806 FGIIDETGYLREGEVVISF---GFSQT-GEDQPTPPQDGQ-------IVIVTRSPALHPG 854
Query: 670 DVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
D+++ K V P H H ++C++F Q G R + + L
Sbjct: 855 DIQIAKQVVPPPSHPLSHHINCIIFSQHGQRDLPSQL 891
>gi|397600982|gb|EJK57779.1| hypothetical protein THAOC_22138 [Thalassiosira oceanica]
Length = 1292
Score = 223 bits (567), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 152/472 (32%), Positives = 241/472 (51%), Gaps = 61/472 (12%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRD----IDNFLRISFIDEDLDKIHSTDLSPR 315
V R+ +TP+R+ G +SNR++R F +D ++F+R++ DE+ DK++S D++
Sbjct: 449 VPRLLLTPTRLVVTGFHFEISNRMIRKFIQDHNFMSESFVRLTLGDENSDKLYSDDIT-- 506
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 375
++ RI + GI I + ++FLA+SSSQL+E S W+ + G T +
Sbjct: 507 ---------VQVEERIKEFVLGGIDIVGKHYKFLAYSSSQLKEQSLWLVSPERGWTVDGM 557
Query: 376 REWMGNFREIRNVAKYAARLGQSFS--------SSKETLSVHMDEI-------EIIPDVK 420
RE MG+F + +KYAAR+GQ FS S + MD+ + + D+
Sbjct: 558 RESMGDFSMCKTPSKYAARIGQCFSTTVSVAEGSGSRNIFSAMDKTTDWLRVKDDLEDIT 617
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASKC--GLKDNPP-SAFQIRYGGYKGVVAA----- 472
+ SDG+G + E + + G +D SA QIR GG KGV+
Sbjct: 618 SRWNGLEMQHSDGVGLIRKEVLQNAIKQVPFGPRDKTHISAIQIRLGGAKGVLVGWSFDQ 677
Query: 473 -----DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIF 527
+ + + LR S K+ + L+V+ + P FLNR ++ L S LGI D IF
Sbjct: 678 LNHLKNEIRNFDICLRPSQVKFSAPYMSLEVVNLATRIPYFLNRNVVLLGSHLGIQDGIF 737
Query: 528 EKKQREAVRQLDAILTDPLKAQEALELMSPGENT--NILKELLICGYKPDAEPFLSMMLQ 585
Q+E ++ L+ +L D A L +S + + + L +L+ G KP+ +PFL L
Sbjct: 738 LCLQKEMIQDLNLLLYDADHALRFLPSLSGPDCSLVSTLMSMLLAGMKPNIDPFLFSCLH 797
Query: 586 TFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSS 645
T RA ++ LR K RIF+ +G +MGCLDET + VF+Q+ H S
Sbjct: 798 TTRAHHMMTLRKKARIFVKDGAVLMGCLDETGLVPENSVFIQVK-------HDNGSFKP- 849
Query: 646 SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
++G V+V K+P +HPGD+R+L+AVN+P L +M D ++F + G R
Sbjct: 850 --------IEGKVMVTKHPVMHPGDMRMLEAVNIPELKNMKDIIIFSRHGSR 893
>gi|341885460|gb|EGT41395.1| CBN-RRF-3 protein [Caenorhabditis brenneri]
Length = 1736
Score = 221 bits (564), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 158/493 (32%), Positives = 250/493 (50%), Gaps = 51/493 (10%)
Query: 235 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
QY + ++ S + A L V V +V VTPSR+ PE+ + NR++R F D
Sbjct: 623 QYERLLSGESLQDVGLAKPLPKNCVQVAKVIVTPSRILLMAPEVMMVNRIVRRFGPDYA- 681
Query: 294 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
LR F D++L ++ D S + D + I +TL+ G+ + DRK+ FL +S+
Sbjct: 682 -LRCVFRDDNLGRLAIRDFS---VNNIDHLSNIVTESIFNTLKYGVQVADRKYSFLGWSN 737
Query: 354 SQLRESSAWMFA-------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 406
SQ+R+ +++A R T EIR+WMG+FRE +V K +R+GQ F+ ++ T+
Sbjct: 738 SQMRDQGCYLYAPRVDPATGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQCFTQAQPTV 797
Query: 407 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 466
+ + PDV+ + KY FSDG G++S + A + LK+ P + FQ+R+ G+
Sbjct: 798 RLERRHWIVEPDVEGGLS-GKYCFSDGCGRISVKLANHITRILELKETP-ACFQVRFKGF 855
Query: 467 KGVVAADPT-----SSKKLSLRDSMRKY-----ESELTKLDVLAWSKYQPCFLNRQLISL 516
KG++ DPT K+ R S +K+ + + L+V+ ++ P LNR I++
Sbjct: 856 KGILVIDPTIDDIIGMPKVIFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCLNRPFITI 915
Query: 517 LSTLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 566
L + I + I +RE + +L + A+E + + + N K
Sbjct: 916 LDQVSAKQSASSHRRITNRIHYYLERELCSLSNMLLNENQAAEELVNRTNLPIDWN--KA 973
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQV 624
G++ +P + ML + ++ +K +IF+P GRSM G +DET L YGQV
Sbjct: 974 SKHAGFQLSKDPLIRSMLFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETGLLQYGQV 1033
Query: 625 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 684
F+Q S + RQ S + G V++ KNPC PGDVRV +AV PAL H
Sbjct: 1034 FIQYSQS-IRQT-----------SATPILKTGKVLITKNPCHVPGDVRVFEAVWQPALAH 1081
Query: 685 MVDCVVFPQKGMR 697
+VD VVFP+ G R
Sbjct: 1082 LVDVVVFPRHGPR 1094
>gi|261191013|ref|XP_002621915.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
gi|239590959|gb|EEQ73540.1| RNA dependent RNA polymerase [Ajellomyces dermatitidis SLH14081]
Length = 1239
Score = 221 bits (563), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 179/568 (31%), Positives = 273/568 (48%), Gaps = 67/568 (11%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH---LKECC 225
LPY++ F++ LV NG ++ P +F V ++ + AL +L
Sbjct: 321 LPYQVRFQLQKLVWNGDIS-PAKAISFASRVQAALVTENLDVVVQALMRLRQNIKWPSPD 379
Query: 226 YEPSR----WLTDQYRKYMTS---RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 278
EPS L +R + + K +S + V +HRVQVTP +Y GP +
Sbjct: 380 VEPSEVDVSALVATFRNALEAAVREHKMASTNRHTNPNHVSIHRVQVTPCGIYLDGPYME 439
Query: 279 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 338
NRVLR + +D+FLR+ F+DE D + PR S D+ R L+NG
Sbjct: 440 SKNRVLRRYANHVDHFLRVEFMDESGDPVR---YDPRAS--IDLI---FQQRFKGVLKNG 491
Query: 339 ILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREIRNVAKYAAR 394
I I RKFEFL FS S LR + W A Y A I + +G F I + AK AAR
Sbjct: 492 INIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTIIQNLGRFDHINSPAKQAAR 551
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 454
+GQ+FS + ++ + + I ++ DVK + VFSDG+G +S + L+
Sbjct: 552 IGQTFSETLTSIPISEEIISVVQDVK----RNDRVFSDGVGTISPSVMYMIWKDYSLRTM 607
Query: 455 -PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT----KLDVLAWS-KYQPC 507
P+ FQIR G KG+V+ D + L LR SM K+ + +++ + P
Sbjct: 608 VKPTVFQIRIAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTSFNAYNIEICGSGIRSLPF 667
Query: 508 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE- 566
FLN QLI +L LG+ +F K QR+ + +L A T +A + L E+TNI K
Sbjct: 668 FLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFL------EDTNIAKSV 721
Query: 567 --------LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 618
L G + + FL +++ KL +L+ + RI +P ++ G +DET
Sbjct: 722 GLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGIMDETGY 781
Query: 619 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
L G++F +SL S + R+ ++ VVV ++P +HPGDV++ KAV+
Sbjct: 782 LKEGEIFC-------------TSL--SDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAVD 826
Query: 679 VPA---LHHMVDCVVFPQKGMRYILTML 703
VPA L + +C+ F Q G R + +ML
Sbjct: 827 VPADSPLRQLHNCIAFSQHGDRDLPSML 854
>gi|239613137|gb|EEQ90124.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ER-3]
Length = 1154
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 178/568 (31%), Positives = 273/568 (48%), Gaps = 67/568 (11%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH---LKECC 225
LPY++ F++ LV NG ++ P +F V ++ + AL +L
Sbjct: 236 LPYQVRFQLQKLVWNGDIS-PAKAISFASRVQAALVTENLDVVVQALMRLRQNIKWPSPD 294
Query: 226 YEPSR----WLTDQYRKYMTS---RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 278
EPS L +R + + K +S + V +HRVQVTP +Y GP +
Sbjct: 295 VEPSEVDVSALVATFRNALEAAVREHKMASTNRHTNPNHVSIHRVQVTPCGIYLDGPYME 354
Query: 279 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 338
NRVLR + +D+FLR+ F+DE D + PR S D+ R L+NG
Sbjct: 355 SKNRVLRRYANHVDHFLRVEFMDESGDPVR---YDPRAS--IDLI---FQQRFKGVLKNG 406
Query: 339 ILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREIRNVAKYAAR 394
I I RKFEFL FS S LR + W A Y A I + +G F I + AK AAR
Sbjct: 407 INIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTIIQNLGRFDHINSPAKQAAR 466
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 454
+GQ+FS + ++ + + I ++ DV+ + VFSDG+G +S + L+
Sbjct: 467 IGQTFSETLTSIPISEEIISVVQDVR----RNDRVFSDGVGTISPSVMYMIWKDYSLRTM 522
Query: 455 -PPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT----KLDVLAWS-KYQPC 507
P+ FQIR G KG+V+ D + L LR SM K+ + +++ + P
Sbjct: 523 VKPTVFQIRIAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTSFNAYNIEICGSGIRSLPF 582
Query: 508 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE- 566
FLN QLI +L LG+ +F K QR+ + +L A T +A + L E+TNI K
Sbjct: 583 FLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFL------EDTNIAKSV 636
Query: 567 --------LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 618
L G + + FL +++ KL +L+ + RI +P ++ G +DET
Sbjct: 637 GLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGIMDETGY 696
Query: 619 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
L G++F +SL S + R+ ++ VVV ++P +HPGDV++ KAV+
Sbjct: 697 LKEGEIFC-------------TSL--SDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAVD 741
Query: 679 VPA---LHHMVDCVVFPQKGMRYILTML 703
VPA L + +C+ F Q G R + +ML
Sbjct: 742 VPADSPLRQLHNCIAFSQHGDRDLPSML 769
>gi|260801475|ref|XP_002595621.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
gi|229280868|gb|EEN51633.1| hypothetical protein BRAFLDRAFT_64731 [Branchiostoma floridae]
Length = 1492
Score = 220 bits (560), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 136/325 (41%), Positives = 191/325 (58%), Gaps = 31/325 (9%)
Query: 384 EIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK----TKYVFSDGIGKVSA 439
++R A Y AR+GQ FS+++ +++V ++ I D IE G+ Y FSDGIGK+S
Sbjct: 587 QVRCPATYLARMGQCFSTTESSVTVRPGQVSRIAD--IEGGRDPDGKSYCFSDGIGKISR 644
Query: 440 EFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDV 498
+ A++V K + + PSAFQ+RY G KG++A DPT + + R SM K+ SE +++
Sbjct: 645 DLAKEVCEKT-QRSHEPSAFQVRYAGVKGMLAVDPTLTGLAMQYRKSMEKFSSEHNNIEI 703
Query: 499 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 558
+ S +LNRQ+IS+LS LGI DE+F+ Q + +R+L ++ +A +AL +
Sbjct: 704 CSESHPARFYLNRQIISILSGLGIPDEVFQVLQEDQLRKLASMFLLENRAVDALNQRAQL 763
Query: 559 ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDET 616
K L CG EPF ML+ S + + R K RI IP GR+M+G LDET
Sbjct: 764 SGVPYQK-LSNCGVYMTREPFFKGMLRRVYKSGIGDTRRKARIEIPPEYGRNMLGVLDET 822
Query: 617 RTLNYGQVFVQ----ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 672
TL YGQVFVQ I+ G GE+ + + G VVV++NPC HPGDVR
Sbjct: 823 GTLEYGQVFVQYTEDITDKG-----GETKVLT-----------GDVVVSRNPCFHPGDVR 866
Query: 673 VLKAVNVPALHHMVDCVVFPQKGMR 697
L+AV+VPALHHMVD +VFP KG R
Sbjct: 867 KLRAVDVPALHHMVDVIVFPSKGPR 891
Score = 153 bits (386), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 91/210 (43%), Positives = 127/210 (60%), Gaps = 13/210 (6%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
L V RV VTP+R+ F PEI NRVLR F D+FLR+ F DED K+ +T + RG
Sbjct: 389 LQVVARVIVTPTRLVFLQPEIMYGNRVLREF--GTDHFLRVVFRDEDFSKLQATG-TGRG 445
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
+ + +I+ R+ L+ GI +G+R +EFLA S+SQLRE W FAS A IR
Sbjct: 446 NGDEE---EKIFVRVRKVLKKGIKVGNRLYEFLAASNSQLREHGLWFFASDGRNRADSIR 502
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK----TKYVFSD 432
+WMG+F R A Y AR+GQ FS+++ +++V ++ I D IE G+ Y FSD
Sbjct: 503 DWMGDFSNSRCPATYLARMGQCFSTTESSVTVRPGQVSRIAD--IEGGRDPDGKSYCFSD 560
Query: 433 GIGKVSAEFARKVASKCGLKDNPPSAFQIR 462
GIGK+S + A++V K + + PSAFQ+R
Sbjct: 561 GIGKISRDLAKEVCEKT-QRSHEPSAFQVR 589
>gi|156361828|ref|XP_001625486.1| predicted protein [Nematostella vectensis]
gi|156212322|gb|EDO33386.1| predicted protein [Nematostella vectensis]
Length = 531
Score = 219 bits (559), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 142/350 (40%), Positives = 200/350 (57%), Gaps = 48/350 (13%)
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE---IEIIPDVKIE--------I 423
IR +G+ EIR VA + +R+GQ FSS+K+++ V +D IE IPDV+ E
Sbjct: 1 IRSKLGDLEEIRCVAVFVSRMGQCFSSTKKSVEVSLDNGVRIEKIPDVEKEYNNVLFPCC 60
Query: 424 GKTK---YVFSDGIGKVSAEFARKVASKCGLK--DNPPSAFQIRYGGYKGVVAADPT-SS 477
G + Y+FSDGIGK+S + A KVA GL+ + PSA+QIRY G KG++A DP+
Sbjct: 61 GNVRSGVYIFSDGIGKISKDLANKVAKSLGLEAVEMFPSAYQIRYAGCKGMLAVDPSLRG 120
Query: 478 KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 537
+ L RDSM+K++S L++ S+ + NRQ I+LLS LG+ D+ F + Q + +
Sbjct: 121 EVLQYRDSMKKFQSSHKALEICEPSRPSELYFNRQCITLLSGLGVPDDEFIRLQDKMLMD 180
Query: 538 LDAILTDPLKAQEALELMSPGENTNILKELLI--CGYKPDAEPFLSMMLQTFRASKLLEL 595
L ++L A E+L +S LK LI G EPF ML S+L +L
Sbjct: 181 LASMLLYETSALESLGRISIAGG---LKVSLIRHSGIVVTCEPFFRSMLLAIYRSRLGDL 237
Query: 596 RTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQIS------GAGYRQLHGESSLFSSSR 647
+ RI IP +GR +MG LDET +L+YG+VF++ + G GY
Sbjct: 238 LRRARIAIPESHGRLLMGVLDETGSLDYGEVFIRYTTELGNPGQGYT------------- 284
Query: 648 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
I+ G VVV+KNPC HPGD+R AV++PAL+H+VDC+VFP KG R
Sbjct: 285 -----ILTGDVVVSKNPCFHPGDMRKFNAVDIPALYHLVDCIVFPAKGPR 329
>gi|392890785|ref|NP_495713.2| Protein RRF-3 [Caenorhabditis elegans]
gi|316979926|emb|CAA88315.2| Protein RRF-3 [Caenorhabditis elegans]
Length = 1765
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 162/499 (32%), Positives = 254/499 (50%), Gaps = 63/499 (12%)
Query: 235 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
QY + + S + A L V V +V VTPSR+ PE+ + NRV+R F D
Sbjct: 653 QYERLLKGESLQDVGLAKPLPKNCVSVAKVIVTPSRILLMAPEVMMVNRVVRRFGPDY-- 710
Query: 294 FLRISFIDEDLDKIHSTDLSPRG-SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFS 352
LR F D++L ++ D S ++I IY TL+NGI + DR + FL +S
Sbjct: 711 ALRCVFRDDNLGRLAIRDFSINNIDHMSNIVTEGIYL----TLKNGIQVADRVYSFLGWS 766
Query: 353 SSQLRESSAWMFASRYGL-------TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
+SQ+R+ +++A R T +IR WMG+FR+ +V K +R+GQ F+ ++ T
Sbjct: 767 NSQMRDQGCYLYAPRVNALTGEVTGTVEDIRVWMGDFRDAISVPKMMSRMGQCFTQAQPT 826
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
+ + + PD++ + + KY FSDG G++S + A ++ LK+ P+ FQ+R+ G
Sbjct: 827 VRLERHHWIVEPDIEGGV-ENKYCFSDGCGRISIKLATHISKILQLKE-VPACFQVRFKG 884
Query: 466 YKGVVAADPT-----SSKKLSLRDSMRKY-----ESELTKLDVLAWSKYQPCFLNRQLIS 515
+KG++ DPT + K+ R S +K+ E + L+V+ ++ P LNR I+
Sbjct: 885 FKGILVIDPTIDDIINMPKVIFRKSQQKFGEGGGELQDEYLEVVKYAMPSPVCLNRPFIT 944
Query: 516 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLI------ 569
+L D++ EK+ + R++ + L+ +E L + N N E L+
Sbjct: 945 IL------DQVSEKQSASSHRRITNRVHYYLE-RELCSLSNMLINENQAAEELVNRTNLA 997
Query: 570 ---------CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRT 618
G++ +P + ML + ++ +K +IF+P GRSM G +DET
Sbjct: 998 IDWNAASKRAGFELSVDPLIRDMLFSIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGL 1057
Query: 619 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
L YGQVF+Q S + RQ S + + G V++ KNPC PGDVRV AV
Sbjct: 1058 LQYGQVFIQYSPS-IRQT-----------SNRPILKTGKVLITKNPCHVPGDVRVFDAVW 1105
Query: 679 VPALHHMVDCVVFPQKGMR 697
PAL H+VD VVFPQ G R
Sbjct: 1106 QPALAHLVDVVVFPQHGPR 1124
>gi|268530338|ref|XP_002630295.1| C. briggsae CBR-RRF-3 protein [Caenorhabditis briggsae]
Length = 1766
Score = 219 bits (557), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 157/493 (31%), Positives = 250/493 (50%), Gaps = 51/493 (10%)
Query: 235 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
QY + + S + A L V V +V V+PSRV PE+ + NRV+R F D
Sbjct: 654 QYERLLNGESLQDVGLARPLPKNCVSVAKVIVSPSRVLLMAPEVMMVNRVVRRFGPDYA- 712
Query: 294 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
LR F D++L ++ D S + D + I +TL+NGI + DR + FL +S+
Sbjct: 713 -LRCVFRDDNLGRLAIRDFS---INNIDHMSNVVTEAIYNTLKNGIQVADRHYSFLGWSN 768
Query: 354 SQLRESSAWMFASRY-------GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 406
SQ+R+ +++A R T +IR WMG+FRE +V K +R+GQ F+ ++ T+
Sbjct: 769 SQMRDQGCYLYAPRVDPISGKVSGTVEDIRVWMGDFREAVSVPKMMSRMGQCFTQAQPTV 828
Query: 407 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 466
+ + PD++ G K+ FSDG G++S + A ++ K LK+ P+ FQ+R+ G+
Sbjct: 829 KLARHHWLVEPDMEGGPG-NKFCFSDGCGRISYKLAGQITRKLKLKE-IPACFQVRFKGF 886
Query: 467 KGVVAADPT-----SSKKLSLRDSMRKY-----ESELTKLDVLAWSKYQPCFLNRQLISL 516
KG++ DPT + K+ R S +K+ + + L+V+ ++ P LNR +++
Sbjct: 887 KGILVIDPTIDDIINMPKVIFRKSQQKFGEGGGDQQDESLEVVKYAMPSPVCLNRPFVTI 946
Query: 517 LSTLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 566
L + I + + +RE + +L + A+E + + + N+ +
Sbjct: 947 LDQVSKKQSAKCHQRITNRVHYYLERELSSLSNMLLNENQAAEELVNRTNLPIDWNLASK 1006
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQV 624
G++ +P + ML ++ +K +IF+P GRSM G +DET L YGQV
Sbjct: 1007 R--AGFQLSVDPLIRSMLFAIYRYNIIHHISKAKIFLPPSLGRSMYGVVDETGLLQYGQV 1064
Query: 625 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 684
F+Q S RQ E L + G V++ KNPC PGDVRV AV PAL H
Sbjct: 1065 FIQYSPT-IRQTSPEPLLKT-----------GKVLITKNPCHVPGDVRVFDAVWQPALAH 1112
Query: 685 MVDCVVFPQKGMR 697
+VD VVFP+ G R
Sbjct: 1113 LVDVVVFPRHGPR 1125
>gi|396482889|ref|XP_003841572.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans
JN3]
gi|312218147|emb|CBX98093.1| similar to rna-dependent rna polymerase [Leptosphaeria maculans
JN3]
Length = 1248
Score = 218 bits (556), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 154/463 (33%), Positives = 238/463 (51%), Gaps = 38/463 (8%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
L ++ +TP+ + GP+ +VSNRVLR + + + F+R+ F DED + PR
Sbjct: 442 LALTYKATITPTGMLLRGPDWDVSNRVLRKYGKHTECFMRVFFADEDGLSVF---FDPRA 498
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTA 372
S + R+Y R LRNGI + R+F+FL FS + LR AW + A
Sbjct: 499 S------QDRVYERFRGVLRNGITVAGRRFDFLGFSHASLRSHQAWFMTPFIKDGISICA 552
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 432
+I E +G+F IR A+ AAR+GQ+FS + SV + + + + K+++ + FSD
Sbjct: 553 RDIIEDLGDFSHIRCSARCAARIGQAFSDT--IFSVRVPDSAYVTESKVDVKRNGRYFSD 610
Query: 433 GIGKVSAEFARKV--ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY 489
G G +S E RKV A ++ P+ QIRY G KGV++ D + ++L +R SM KY
Sbjct: 611 GCGTISLELMRKVWNALPPERREQRPTVLQIRYRGAKGVLSLDTSLVGEQLHVRQSMTKY 670
Query: 490 ESELTKLDV-LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
++ D+ L + Y+P FLN Q I +L LG+ + F+ Q EAV L I P+
Sbjct: 671 IAKEGWKDLELCGAAYKPLTVFLNHQFIKILEDLGVPERNFKAIQNEAVDTLKLITEHPI 730
Query: 547 KAQEALELMSPG--ENTNILKELL-ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
A LE T L EL+ G A+ FL+ +++ S L L+ + RI I
Sbjct: 731 NAASFLEYSHSSVYARTPRLFELMHQIGLSFHADRFLTDIVEVAAMSNLRSLKYRARIPI 790
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
G + G +DET L G+V+V ++ SR + ++ V++ +
Sbjct: 791 SQGYLLYGIMDETGILKEGEVYVATK--------SHDAIGHKSR---KILIGDRVIITRA 839
Query: 664 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
P LHPGDV+++KAV+VP L + +CVVF Q+G R + + L
Sbjct: 840 PALHPGDVQIVKAVDVPEYSPLRALHNCVVFSQQGARDLPSQL 882
>gi|327354796|gb|EGE83653.1| RNA-dependent RNA polymerase [Ajellomyces dermatitidis ATCC 18188]
Length = 1240
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 179/569 (31%), Positives = 273/569 (47%), Gaps = 68/569 (11%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH---LKECC 225
LPY++ F++ LV NG ++ P +F V ++ + AL +L
Sbjct: 321 LPYQVRFQLQKLVWNGDIS-PAKAISFASRVQAALVTENLDVVVQALMRLRQNIKWPSPD 379
Query: 226 YEPSR----WLTDQYRKYMTS---RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEIN 278
EPS L +R + + K +S + V +HRVQVTP +Y GP +
Sbjct: 380 VEPSEVDVSALVATFRNALEAAVREHKMASTNRHTNPNHVSIHRVQVTPCGIYLDGPYME 439
Query: 279 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 338
NRVLR + +D+FLR+ F+DE D + PR S D+ R L+NG
Sbjct: 440 SKNRVLRRYANHVDHFLRVEFMDESGDPVR---YDPRAS--IDLI---FQQRFKGVLKNG 491
Query: 339 ILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREIRNVAKYAAR 394
I I RKFEFL FS S LR + W A Y A I + +G F I + AK AAR
Sbjct: 492 INIAGRKFEFLGFSHSSLRSQTCWFVAPFYADGILYNATTIIQNLGRFDHINSPAKQAAR 551
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 454
+GQ+FS + ++ + + I ++ DVK + VFSDG+G +S + L+
Sbjct: 552 IGQTFSETLTSIPISEEIISVVQDVK----RNDRVFSDGVGTISPSVMYMIWKDYSLRTM 607
Query: 455 -PPSAFQIRY-GGYKGVVAADP-TSSKKLSLRDSMRKYESELT----KLDVLAWS-KYQP 506
P+ FQIR G KG+V+ D + L LR SM K+ + +++ + P
Sbjct: 608 VKPTVFQIRIAAGAKGMVSLDSRNKGESLVLRPSMIKFPVTTSFNAYNIEICGSGIRSLP 667
Query: 507 CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 566
FLN QLI +L LG+ +F K QR+ + +L A T +A + L E+TNI K
Sbjct: 668 FFLNAQLIKILEDLGVDGNVFLKLQRDEILRLRATATSTTQAAKFL------EDTNIAKS 721
Query: 567 ---------LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 617
L G + + FL +++ KL +L+ + RI +P ++ G +DET
Sbjct: 722 VGLPWLISILEALGLRHSDDEFLRRVMELVVLIKLRDLKYRARIRVPKAVTLFGIMDETG 781
Query: 618 TLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 677
L G++F +SL S + R+ ++ VVV ++P +HPGDV++ KAV
Sbjct: 782 YLKEGEIFC-------------TSL--SDKGRREVLLNPKVVVTRSPAMHPGDVQIAKAV 826
Query: 678 NVPA---LHHMVDCVVFPQKGMRYILTML 703
+VPA L + +C+ F Q G R + +ML
Sbjct: 827 DVPADSPLRQLHNCIAFSQHGDRDLPSML 855
>gi|330921324|ref|XP_003299375.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
gi|311326958|gb|EFQ92511.1| hypothetical protein PTT_10351 [Pyrenophora teres f. teres 0-1]
Length = 1237
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 157/464 (33%), Positives = 239/464 (51%), Gaps = 38/464 (8%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPR 315
L ++ VTP+ + GP+ +VSNR+LR + + F+R+ F DED L H PR
Sbjct: 438 LALTYKATVTPTGILLRGPDWDVSNRILRKYGTRTEYFMRVFFADEDGLSVFHD----PR 493
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLT 371
S + +Y R S LRNGI + +R ++FL FS + LR AW A +
Sbjct: 494 AS------QDNVYERFRSVLRNGISVSERTYQFLGFSHASLRTHQAWFMAPFEMNGTRFR 547
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 431
A +I +G+F I A+ +AR+GQ+FS + SV + + + K +I + FS
Sbjct: 548 ARDIISDLGDFSHIHCSARCSARIGQAFSDT--IFSVPVSSTAYVTETKPDIVRNGRTFS 605
Query: 432 DGIGKVSAEFARKVASKC--GLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRK 488
DG G +S E RKV + K P+ QIR+ G KGV++ D + + ++L +R SM K
Sbjct: 606 DGCGTISLEILRKVWNTLPPERKTQRPTILQIRFRGAKGVLSLDESLAGEQLHIRQSMTK 665
Query: 489 YESELTKLDV-LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
Y ++ T D+ L + Y+P FLN Q I +L LG+ F+ Q EAV L I P
Sbjct: 666 YIAKETWRDLELCGAAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHP 725
Query: 546 LKAQEALELMSPGENTNI--LKELL-ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
L A LE G + L EL+ G A+ FL+ +++ + L L+ + RI
Sbjct: 726 LNAASFLEYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARIP 785
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
I G + G +DET L GQV+ I+ Y + S + ++R +V +V+ +
Sbjct: 786 IEQGHLLYGIMDETNFLQEGQVY--IATQDYEK-------SGSGKLQRRILVGERIVITR 836
Query: 663 NPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
P LHPGDV+++ AV+VPA L + +CVVF Q+G R + + L
Sbjct: 837 APALHPGDVQLVTAVDVPANSSLRALHNCVVFSQRGARDLPSQL 880
>gi|225678504|gb|EEH16788.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 1262
Score = 216 bits (549), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 189/608 (31%), Positives = 284/608 (46%), Gaps = 118/608 (19%)
Query: 166 GIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECC 225
G LPY ++F++ LV NG ++ P+ +F V + + ALDKL +
Sbjct: 315 GGDLPYRVMFQLQKLVWNGAIS-PVNAISFAYRVGKELVDADLDVVVQALDKLERDIQWS 373
Query: 226 YEP---------------SRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRV 270
+ L R+ SRS + I L++ + +HR QVTP +
Sbjct: 374 SPDVQASEVDVVALMKLFANALEIVLRERALSRS---NRQIHLNN--ILIHRAQVTPCGI 428
Query: 271 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR 330
Y GP++ NRVLR + ++D+FLR+ F+DE D I R S + +R
Sbjct: 429 YLYGPQLETKNRVLRIYEANVDHFLRVEFVDESGDPI-------RYDSRASVDAI-FQSR 480
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGL-TAAEIREWMGNFREIR 386
L+ GI I RKFEFL FS S LR + W F S L A I + +G F I
Sbjct: 481 FKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATVIIQNLGRFDHIH 540
Query: 387 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 446
+ AK AAR+GQ+FS + ++ + D + + DV+ + VFSDG+G +S ++
Sbjct: 541 SPAKQAARIGQTFSDTLTSIPISFDMLSVGEDVE----RNGRVFSDGVGTISPSLMYEIW 596
Query: 447 SKCGLKDN-PPSAFQIRYG-----------------------GYKGVVAADPT-SSKKLS 481
L+ P+ FQIR G KG++A D T + K L
Sbjct: 597 KDHSLRAKVKPTVFQIRVAAPEPLLAGFHAYRGILLTETWFIGAKGMIALDSTKTGKSLM 656
Query: 482 LRDSMRKY--ESELTKLDV-LAWS--KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 536
LR SM K+ + L++ L S K P FLN QLI +L LG+ F K Q + +
Sbjct: 657 LRKSMVKFPVPETVGGLNIELCGSGLKALPFFLNAQLIKILEDLGVEQSAFLKLQADEIE 716
Query: 537 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRAS------ 590
+L A T P AQ A L E+T+I K + + P+L +L+ FR S
Sbjct: 717 RLRA--TAPSTAQAARFL----EDTHIAKSIGL--------PWLISILEGFRLSHTNDEF 762
Query: 591 -----------KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF-VQISGAGYRQLHG 638
KL +L+ + RI +PN ++ G +DET L G++F V +S G+R++
Sbjct: 763 LRRVMELAVLIKLRDLKYRARIRVPNAVTLFGIMDETGILKEGEIFCVTLSEDGHREV-- 820
Query: 639 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKG 695
+V+ VVV ++P +HPGDV+V +AV+VPA L + +C+ F Q G
Sbjct: 821 --------------LVRPRVVVTRSPAMHPGDVQVARAVDVPADSPLRQLHNCIAFSQYG 866
Query: 696 MRYILTML 703
R + +ML
Sbjct: 867 DRDLPSML 874
>gi|451855231|gb|EMD68523.1| hypothetical protein COCSADRAFT_178332 [Cochliobolus sativus
ND90Pr]
Length = 1244
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 152/465 (32%), Positives = 237/465 (50%), Gaps = 42/465 (9%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPR 315
L ++ VTP+ + GP+ +VSNRVLR + + F+R+ F DED L H + S
Sbjct: 445 LALTYKATVTPTGILLRGPDWDVSNRVLRRYTTRTEYFMRVFFADEDGLSVFHDSRAS-- 502
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 375
+ ++Y R + L+NGI + R F+FL FS + LR AW F + + + + +
Sbjct: 503 --------QNQVYERFRNVLQNGISVAGRTFQFLGFSHASLRNHQAW-FMAPFEMDGSLV 553
Query: 376 R-----EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
R + +G+F I AK AAR+GQ+FS + SV + E + +VK ++ + F
Sbjct: 554 RARNVIQDLGDFSHIHCSAKCAARIGQAFSDT--IFSVPVPETAYVTEVKDDVERNGRTF 611
Query: 431 SDGIGKVSAEFARKV--ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMR 487
SDG G +S E R V A + P+ QIRY G KGV++ D + S ++L +R SM
Sbjct: 612 SDGCGTISLELLRTVWRALPPERRQQRPTVLQIRYRGAKGVLSLDASLSGQQLHVRKSMT 671
Query: 488 KYESELTKLDV-LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
KY ++ T D+ L + Y+P FLN Q I +L LG+ E F Q EAV+ L I
Sbjct: 672 KYIAKETWRDLELCGAAYKPLSVFLNHQFIKILEDLGVPAEKFLDVQDEAVKILKLITEH 731
Query: 545 PLKAQEALELMSP---GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
PL A L + + + + G A+ FL+ +++ S L L+ + RI
Sbjct: 732 PLNAASFLAYSHSCVFAKVPQLFEMMHRIGLSFHADRFLTDIVEVAAMSSLRSLKYRARI 791
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
I G + G +DET TL YG+V++ + + ++ +V +VV
Sbjct: 792 PIEKGYLLYGVMDETNTLKYGEVYIATEDHD-----------KTGKLKRSILVGNQIVVT 840
Query: 662 KNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRYILTML 703
+ P LHPGDV+++ AV+VP L + +CVVF Q+G R + + L
Sbjct: 841 RAPALHPGDVQLVNAVDVPDDSPLRALHNCVVFSQQGPRDLPSQL 885
>gi|240276859|gb|EER40370.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H143]
Length = 1240
Score = 215 bits (548), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 178/578 (30%), Positives = 274/578 (47%), Gaps = 87/578 (15%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
+PY + F++ LV NG ++ P +F V RA + I ++ + L L P
Sbjct: 321 MPYRVRFQLQKLVWNGDIS-PAKAISFASRV---RAALVIEDLDIVVRALMRLSSDVKWP 376
Query: 229 SR----------WLTDQYR---------KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSR 269
S L + ++ + MT ++P P + +HR Q+TP
Sbjct: 377 SPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMHP------NHISIHRAQITPCG 430
Query: 270 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 329
Y GP NRVLRH+ +D+FLR+ F+DE D + PR S D+ +
Sbjct: 431 TYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS--IDMI---FES 482
Query: 330 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREI 385
R + L++GI I RKFEFL FS S LR + W A Y A+ I + +G F I
Sbjct: 483 RFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDHI 542
Query: 386 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 445
++ AK AAR+GQ+FS + ++ + I I DV+ + VFSDG+G +S +
Sbjct: 543 QSPAKQAARIGQTFSDTLTSIPISDKYISIGKDVE----RNGRVFSDGVGTISPSVMYMI 598
Query: 446 ASKCGLKD-NPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE--SELTKLDVLAW 501
L+ P+ FQIR G KG+++ D K L LR SM K+ + ++
Sbjct: 599 WKDHSLRTVVKPTVFQIRLAGAKGMISLDSRKKGKSLVLRPSMIKFHLPNSYNAFNIEIC 658
Query: 502 S---KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 558
K P FLN QLI +L LG+ D +F + Q + + +L A T KA L
Sbjct: 659 GSGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFL------ 712
Query: 559 ENTNILKELLI---------CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
E+TNI K + + G + + FL +++ KL +L+ + RI +PN ++
Sbjct: 713 EDTNIAKSVGLPWLINILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTL 772
Query: 610 MGCLDETRTLNYGQVF-VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
G +DET L G+VF +S G R++ +V VVV ++P +HP
Sbjct: 773 FGIMDETGILKEGEVFCTSLSDKGVREV----------------LVNPRVVVTRSPAMHP 816
Query: 669 GDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
GDV++ +AV+VPA L + +C+ F Q G R + +ML
Sbjct: 817 GDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSML 854
>gi|225554768|gb|EEH03063.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus G186AR]
Length = 1240
Score = 215 bits (547), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 178/578 (30%), Positives = 274/578 (47%), Gaps = 87/578 (15%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
+PY + F++ LV NG ++ P +F V RA + I ++ + L L P
Sbjct: 321 MPYRVRFQLQKLVWNGDIS-PAKAISFASRV---RATLVIEDLDIVVRALMRLSSDVKWP 376
Query: 229 SR----------WLTDQYR---------KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSR 269
S L + ++ + MT ++P P V +HR Q+TP
Sbjct: 377 SPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMHP------NHVSIHRAQITPCG 430
Query: 270 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 329
Y GP NRVLRH+ +D+FLR+ F+DE D + PR S D+ +
Sbjct: 431 TYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS--IDMI---FES 482
Query: 330 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREI 385
R + L++GI I RKFEFL FS S LR + W A Y A I + +G F I
Sbjct: 483 RFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNATTIIQNLGRFDHI 542
Query: 386 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 445
++ AK AAR+GQ+FS + ++ + I + DV+ + VFSDG+G +S +
Sbjct: 543 QSPAKQAARIGQTFSDTLTSIPISEKYISVGKDVE----RNGRVFSDGVGTISPSVMYMI 598
Query: 446 ASKCGLKD-NPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELT----KLDVL 499
L+ P+ FQIR G KG+++ D K L LR SM K+ + +++
Sbjct: 599 WKDHSLRTVVKPTVFQIRLAGAKGMISLDSRKKGKSLVLRPSMIKFHLPHSYNAFNIEIC 658
Query: 500 AWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG 558
K P FLN QLI +L LG+ D +F + Q + + +L A T KA L
Sbjct: 659 GSGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFL------ 712
Query: 559 ENTNILKELLI---------CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
E+TNI K + + G + + FL +++ KL +L+ + RI +PN ++
Sbjct: 713 EDTNIAKSVGLPWLINILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTL 772
Query: 610 MGCLDETRTLNYGQVF-VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
G +DET L G+VF +S G R++ +V VVV ++P +HP
Sbjct: 773 FGIMDETGILKEGEVFCTSLSDKGVREV----------------LVNPRVVVTRSPAMHP 816
Query: 669 GDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
GDV++ +AV+VPA L + +C+ F Q G R + +ML
Sbjct: 817 GDVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSML 854
>gi|189200837|ref|XP_001936755.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187983854|gb|EDU49342.1| RNA-dependent RNA polymerase [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 953
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 155/464 (33%), Positives = 236/464 (50%), Gaps = 40/464 (8%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPR 315
L ++ VTP+ + GP+ +VSNR+LR + + F+R+ F DED L H PR
Sbjct: 132 LALTYKATVTPTGILLRGPDWDVSNRILRKYGTRTEYFMRVFFADEDGLSVFH----DPR 187
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLT 371
S +Y R S L++GI + R ++FL FS + LR AW A +
Sbjct: 188 ASQGN------VYERFRSVLQHGIFVAGRTYQFLGFSHASLRSHQAWFMAPFEMNGTMFR 241
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 431
A +I +G+F I A+ +AR+GQ+FS + SV + + + K +I + FS
Sbjct: 242 ARDIISDLGDFSHIHCSARCSARIGQAFSDT--IFSVPVPSTAYVTETKADIARNGRTFS 299
Query: 432 DGIGKVSAEFARKVASKC--GLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRK 488
DG G +S E RKV + K P+ QIR+ G KGV++ D + ++L +R SM K
Sbjct: 300 DGCGTISLEILRKVWNTLPPERKAQRPTILQIRFRGAKGVLSLDESLVGEQLHIRQSMTK 359
Query: 489 YESELTKLDV-LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
Y ++ T D+ L + Y+P FLN Q I +L LG+ F+ Q EAV L I P
Sbjct: 360 YIAKETWRDLELCGAAYKPLQVFLNHQFIKILEDLGVPARNFKAVQDEAVNALKMITEHP 419
Query: 546 LKAQEALELMSPGENTNI--LKELL-ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
L A LE G + L EL+ G A+ FL+ +++ + L L+ + RI
Sbjct: 420 LNAASFLEYSHSGVYAKVPRLFELMHQIGLSFHADRFLTDIVEVAAMTNLRSLKYRARIP 479
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
I G + G +DET L GQV+ I+ Y + S + R+R +V +V+ +
Sbjct: 480 IEQGHLLYGIMDETNFLQEGQVY--IATQDYDK---------SGKLRRRILVGERIVITR 528
Query: 663 NPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRYILTML 703
P LHPGDV+++ AV+VP +L + +CVVF Q+G R + + L
Sbjct: 529 APALHPGDVQLVTAVDVPEHSSLRALHNCVVFSQRGARDLPSQL 572
>gi|406862357|gb|EKD15408.1| RNA-dependent RNA polymerase [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1193
Score = 213 bits (541), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 145/469 (30%), Positives = 245/469 (52%), Gaps = 43/469 (9%)
Query: 250 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 309
+IS + +HRV +TPS Y GPE NRVLR + + D+F+R+SF DED + I
Sbjct: 408 SISKSENHAMIHRVTITPSGFYLGGPEYEPMNRVLRQYPKHHDSFIRVSFADEDGEPIR- 466
Query: 310 TDLSPRGSSATDITRTRIYT-RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FA 365
+P+ ++ +I+ R + L G + RKF+FL FS S LR S W FA
Sbjct: 467 --FNPK------VSNEKIFQDRFGTFLSTGFHVAGRKFDFLGFSHSSLRAQSCWFMSPFA 518
Query: 366 SRYGLTAAEIR-EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 424
L + + +G+F +IR AK AAR+GQ+FS + + + ++++PDV+
Sbjct: 519 HNGSLMYDRVLIQQLGDFTKIRCPAKCAARIGQAFSETPIAVPLEPGLVQLLPDVE---- 574
Query: 425 KTKYVFSDGIGKVSAEFARKV-ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSL 482
+ VFSDG GK+S ++ A ++ + P+ FQIRY G KG+++ D T ++ +
Sbjct: 575 RGSRVFSDGCGKISRSIMHRIWAVLPDMRKHQPTCFQIRYQGAKGMLSLDDTLEGDQVLM 634
Query: 483 RDSMRKYESELTKLDVLAWSKYQ--PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
R SM K++ + L + Y+ P +LNRQLI ++ +G+ D+ F Q + + +L
Sbjct: 635 RPSMIKFDGSPSFDLELCNASYKSLPMYLNRQLIKIMEDIGVPDQWFLDLQSQEIERLRK 694
Query: 541 ILTDPLKAQEALELMSPGENTN---ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 597
T A + L S G+ + ++++L + + FL +L+ ++ L+
Sbjct: 695 ATTSASNAAKFLSSHSIGDRVHLSWLIRKLAQMSIEFRTDRFLCDVLELSVMLEVKTLKH 754
Query: 598 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 657
+ R +P G ++ G +DET L G+++ + S + ++ ++Q
Sbjct: 755 RARYPVPEGLTLYGIMDETGILEEGEIYC---------------TYQSQKGKRMVVIQDR 799
Query: 658 VVVAKNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRYILTML 703
V+V ++P LHPGDV+ +KAVNVP L + +C+ F QKG R + +ML
Sbjct: 800 VLVTRSPALHPGDVQPVKAVNVPRDSPLSKLRNCICFSQKGDRDLPSML 848
>gi|328872313|gb|EGG20680.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2876
Score = 211 bits (538), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 153/459 (33%), Positives = 232/459 (50%), Gaps = 68/459 (14%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
VY+ +V VTP+R+ F PEI NR +R F D F+++ F++E+LD H +L +
Sbjct: 1268 VYIKKVFVTPTRIIFQKPEIMQCNRSIRLF--GADRFMQVQFVEENLD--HRIELQQSLA 1323
Query: 318 SATDITRTRIYTRILSTLRNGILI-GDRKFEFLAFSSSQLRESSAWMFASRYGLTAA--- 373
S T+ S ++ GI + G F +L SSSQ R++ +W + A
Sbjct: 1324 SYTN-----------SMMKKGIHVPGFGTFHYLGNSSSQARKNMSWFYCQDKMENAKADG 1372
Query: 374 ---------EIRE-WMGNFREIRNVAKYAARLGQSFSSSKETLSV-HMDEIEIIPDVKIE 422
+R+ +G F N KY + F+S+ ++ + D E IPDV +
Sbjct: 1373 GEEQVYSLDHVRDTLLGEFTNFENPRKYLRAINLVFASTMPSIVIAEEDYHEDIPDVIV- 1431
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 482
Y F++GIG + + A+KV C + AFQIR GG KGVV P + L
Sbjct: 1432 ---NGYNFTEGIGYIGWKTAQKVNEACEYIQST-CAFQIRIGGNKGVVVVRPDIQNGVYL 1487
Query: 483 RDSMRKYESELTK----LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 538
R SM+K+ + + L++++ Y+PC LNRQ+I+LLS LG+ D F +++ +L
Sbjct: 1488 RKSMKKFSTTSNEWSRTLEIVSIPAYKPCTLNRQVINLLSGLGVPDRCFLTLLSQSLNEL 1547
Query: 539 DAILTDPLKAQEAL--ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596
++L P A+ AL +L + IL ++P + L +L+E R
Sbjct: 1548 ASLLHLPKVAKRALSSDLFDDVSDGEIL-----------SDPMIRGTLHRIYCKRLVEYR 1596
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
K I I R+++G D+T +L GQVF+Q+S +GE IV G
Sbjct: 1597 DKCFIPIDTARTLLGVTDDTASLKEGQVFLQVSDE-----NGELQ-----------IVTG 1640
Query: 657 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
V VAKNPCLH GDVR+++AV++PALHH+VD V F Q G
Sbjct: 1641 PVAVAKNPCLHAGDVRIVQAVDIPALHHLVDVVCFSQNG 1679
>gi|389747663|gb|EIM88841.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 890
Score = 211 bits (537), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 151/460 (32%), Positives = 240/460 (52%), Gaps = 54/460 (11%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-----KIHSTDLSP 314
+ R V P+R+ P++ SN +LR F+ D FLR+ FI E+ D + + D +
Sbjct: 347 IRRCLVAPTRLILMPPQMETSNNLLRTFKDHADRFLRVQFIQEESDLTVTRETNEIDDAL 406
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 374
+G ++ R+ TL+ GI + RK+ FL F SQL+ WM A + G +
Sbjct: 407 QGGRG-------LFARVRRTLKYGIHVAGRKYVFLCFGESQLKSKGCWMIAEKEGFSVQG 459
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMD-EIEIIPDV-KIEIGKTKYVFSD 432
I +WMG+ + R +AK+AAR G S+S+ ++ +D ++E I D+ + + +YVF+D
Sbjct: 460 ILKWMGDLDKERVIAKHAARQGLCLSTSR---AIPLDLQVEFIHDITRTDSQGKEYVFTD 516
Query: 433 GIGKVSAEFARKVASKCGLKDNPPSAFQIRYG-GYKGV--VAADP---TSSKKLSLRDSM 486
G+G S E A A G++ + SA Q+RYG G KGV V+ DP + L +RDSM
Sbjct: 517 GMGDCSQEVANVCARFMGIEGD-VSAVQVRYGTGIKGVISVSEDPLMRGNPYTLRVRDSM 575
Query: 487 RKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIW-DEIFE--KKQREAVRQLDAILT 543
K++S L+ L + Y P LNRQ+I L+ +LG+ D + + K ++ ++ L+A
Sbjct: 576 VKFKSSNPGLNALKVATYSPATLNRQVILLMESLGVSPDTLLDIFKTEKTKIQGLEASF- 634
Query: 544 DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
QE L S L++ L G+K D P ++ +++ + L +L+ K I I
Sbjct: 635 ----GQERLSRAS----AFPLEKALDSGFKDD--PLVASIVRLVKCRLLSDLKWKAWIEI 684
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
P +MG +D T TL G++F QI +SS S +V G +N
Sbjct: 685 PKSAFLMGVVDPTGTLQEGEIFCQIQPP------------NSSPS----VVVGDCTAYRN 728
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
PCLHPGDVR +KAV+ ++ H+ + +VF G R + M+
Sbjct: 729 PCLHPGDVRSVKAVDYMSMRHLRNVIVFSTLGHRPLPNMM 768
>gi|452004258|gb|EMD96714.1| hypothetical protein COCHEDRAFT_106396 [Cochliobolus heterostrophus
C5]
Length = 931
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 151/465 (32%), Positives = 236/465 (50%), Gaps = 42/465 (9%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLSPR 315
L ++ VTP+ + GP+ +VSNRVLR + + F+R+ F DED L H + S
Sbjct: 132 LALTYKATVTPTGILLRGPDWDVSNRVLRKYSTRTEYFMRVFFADEDGLSVFHDSRAS-- 189
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 375
+ ++Y R + L+NGI + R F+FL FS + LR AW F + + + + +
Sbjct: 190 --------QNQVYERFRNVLQNGISVAGRTFQFLGFSHASLRNHQAW-FMAPFEMDGSLV 240
Query: 376 R-----EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
R + +G+F I AK AAR+GQ+FS + SV + E + +VK ++ + F
Sbjct: 241 RARNVIQDLGDFSHIHCSAKCAARIGQAFSDT--IFSVPVPETAYVTEVKDDVERNSRTF 298
Query: 431 SDGIGKVSAEFARKV--ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMR 487
SDG G +S E R V A + P+ QIRY G KGV++ D + S ++L +R SM
Sbjct: 299 SDGCGTISLELLRTVWRALPPERRQQRPTVLQIRYRGAKGVLSLDASLSDQQLHVRKSMT 358
Query: 488 KYESELTKLDV-LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
KY ++ T D+ L + Y+P FLN Q I +L LG+ E F Q EAV L I
Sbjct: 359 KYIAKETWRDLELCGAAYKPLSVFLNHQFIKILEDLGVPAENFLHVQDEAVNTLKLITEH 418
Query: 545 PLKAQEALELMSP---GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
PL A L + + + + G A+ FL+ +++ S L L+ + RI
Sbjct: 419 PLNAASFLAYSHSCIFAKVPQLFEMMHRIGLPFHADRFLTDIVEVAAMSSLRSLKYRARI 478
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
I G + G +DET TL YG+V++ Q H ++ S +V ++V
Sbjct: 479 PIEKGYLLYGVMDETNTLKYGEVYIAT------QDHDKTGKLKRS-----ILVGNQIIVT 527
Query: 662 KNPCLHPGDVRVLKAVNV---PALHHMVDCVVFPQKGMRYILTML 703
+ P LHPGD++++ AV+V L + +C+VF Q+G R + + L
Sbjct: 528 RAPALHPGDIQLVDAVDVTDDSPLRALHNCIVFSQQGPRDLPSQL 572
>gi|380095764|emb|CCC05810.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1230
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/470 (31%), Positives = 237/470 (50%), Gaps = 42/470 (8%)
Query: 249 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 308
P + GL ++R VTP+R+ GPE+ NR+LR F D+FLR+ F +ED
Sbjct: 403 PNDEIPSGLTKIYRALVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEED----- 457
Query: 309 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-- 366
DL + + D+ IY R L GI +G R + FL FS S LR S W+ A
Sbjct: 458 GQDLFFNSTVSMDV----IYQRFKDVLTKGISVGGRVYRFLGFSHSSLRAHSLWLSAPFI 513
Query: 367 RYGL--TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 424
G+ + I E +G+FR IR+ A+ AAR+GQ+FS + ++S+H I +I ++ G
Sbjct: 514 HNGVLRISENIIEGLGDFRNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQNDVKRG 573
Query: 425 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLR 483
K VFSDG+GK+S + + P+ Q+R+ G KG++A D +++ +R
Sbjct: 574 KR--VFSDGVGKISQGALEVIHREIPASKGYPNCLQVRWAGAKGMLALDARLPGRQICIR 631
Query: 484 DSMRKY----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
DSM K+ E L D+ SK P LNRQ+I +L +G + F + Q + +++L
Sbjct: 632 DSMEKFRSHDEEHLEICDMA--SKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRLR 689
Query: 540 AILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596
AI L+L G++ ++ LK++ + FL ++++ +L L+
Sbjct: 690 AITNSVHNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQFLRGIVESVVLRELRLLK 749
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
K RI +P G ++ G +DET L G+V+V R +S G
Sbjct: 750 HKARIPVPRGITLFGVMDETGLLREGEVYVTYETVDDRFKDPPTS--------------G 795
Query: 657 LVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
VVV ++P LHPGD+++ + V PA H + +C+VF Q G R + + L
Sbjct: 796 SVVVTRSPALHPGDIQIAQNVIPPAGHPLRELKNCIVFSQNGERDLPSQL 845
>gi|336273462|ref|XP_003351485.1| hypothetical protein SMAC_00026 [Sordaria macrospora k-hell]
Length = 1226
Score = 211 bits (536), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 150/470 (31%), Positives = 237/470 (50%), Gaps = 42/470 (8%)
Query: 249 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 308
P + GL ++R VTP+R+ GPE+ NR+LR F D+FLR+ F +ED
Sbjct: 403 PNDEIPSGLTKIYRALVTPTRIELHGPELEAMNRILRKFPEHQDHFLRVQFGEED----- 457
Query: 309 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-- 366
DL + + D+ IY R L GI +G R + FL FS S LR S W+ A
Sbjct: 458 GQDLFFNSTVSMDV----IYQRFKDVLTKGISVGGRVYRFLGFSHSSLRAHSLWLSAPFI 513
Query: 367 RYGL--TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 424
G+ + I E +G+FR IR+ A+ AAR+GQ+FS + ++S+H I +I ++ G
Sbjct: 514 HNGVLRISENIIEGLGDFRNIRSPARRAARIGQAFSETPYSVSLHDHGIAVIRQNDVKRG 573
Query: 425 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLR 483
K VFSDG+GK+S + + P+ Q+R+ G KG++A D +++ +R
Sbjct: 574 KR--VFSDGVGKISQGALEVIHREIPASKGYPNCLQVRWAGAKGMLALDARLPGRQICIR 631
Query: 484 DSMRKY----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
DSM K+ E L D+ SK P LNRQ+I +L +G + F + Q + +++L
Sbjct: 632 DSMEKFRSHDEEHLEICDMA--SKPIPLMLNRQMIKILEDMGAPAKWFVRLQEKELQRLR 689
Query: 540 AILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596
AI L+L G++ ++ LK++ + FL ++++ +L L+
Sbjct: 690 AITNSVHNVAAFLKLQCVGDSVHLGQFLKDVHKMNIDYRKDQFLRGIVESVVLRELRLLK 749
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
K RI +P G ++ G +DET L G+V+V R +S G
Sbjct: 750 HKARIPVPRGITLFGVMDETGLLREGEVYVTYETVDDRFKDPPTS--------------G 795
Query: 657 LVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
VVV ++P LHPGD+++ + V PA H + +C+VF Q G R + + L
Sbjct: 796 SVVVTRSPALHPGDIQIAQNVIPPAGHPLRELKNCIVFSQNGERDLPSQL 845
>gi|348680026|gb|EGZ19842.1| hypothetical protein PHYSODRAFT_558487 [Phytophthora sojae]
Length = 2706
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 162/488 (33%), Positives = 249/488 (51%), Gaps = 62/488 (12%)
Query: 232 LTDQYRKYMTSR-----SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
+ +Q+ Y+ S SSP SL G V V++V VTPSRV FC P+ SNRV RH
Sbjct: 1088 IAEQFSAYLKEERSVLESMCSSP--SLGSGAV-VYKVIVTPSRVVFCPPDPAPSNRVFRH 1144
Query: 287 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK- 345
+ + NF+ + F D++++++ D T I RI + L+ GI + +
Sbjct: 1145 WGSE--NFMYMYFRDDNMERL-------------DYTSGNILRRIRNVLKKGIEVPHARD 1189
Query: 346 ---FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSS 402
F FL S SQ+R SSA L E+R W+G+ + + AKY RLGQ+FSS+
Sbjct: 1190 GCRFNFLGCSLSQVRNSSAIFTL----LDHHEVRSWIGDLSHLTSPAKYLKRLGQAFSST 1245
Query: 403 KETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR 462
KET +V ++ + +I YVF+DG G+++ A + + L PSAFQIR
Sbjct: 1246 KETFNVSQ---SVLDNPVEDITNDDYVFTDGCGEIAKIGAESIVRELNLS-YTPSAFQIR 1301
Query: 463 YGGYKGVVAA------DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISL 516
GG KGV+ + T + + LR+SM K+ S T L+++A + +L RQ + +
Sbjct: 1302 LGGAKGVLVVSDQDNPEVTREESILLRESMSKFASNHTMLEIVACAGKSEAYLTRQSVLI 1361
Query: 517 LSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYK 573
LS LGI +++ + Q + + +L ++ A L+ + P + ++L L G K
Sbjct: 1362 LSDLGINEDVLMEMQEQFLSELRTLIASDDGAYFELKAVLPPKVIWWIDVLTRKL--GVK 1419
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 633
+ FLS + +T +L + RI I GR++MG D T TL+YG+VFVQ
Sbjct: 1420 ILDDEFLSSLARTIYHYRLANTVMRARIPIAQGRTLMGVADFTGTLDYGEVFVQY----- 1474
Query: 634 RQLHGESSLFSSSRSRQRFIVQGLVVVA--KNPCLHPGDVRVLKA-VNVP-ALHHMVDCV 689
S+ R++ V VA ++PC HPGD+RVL+ +VP L + DC+
Sbjct: 1475 -------SVTEEETGADRYVTLDEVDVAVHRSPCHHPGDIRVLRCRADVPRQLRQLKDCI 1527
Query: 690 VFPQKGMR 697
VFP +G R
Sbjct: 1528 VFPCQGPR 1535
>gi|339242799|ref|XP_003377325.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
gi|316973886|gb|EFV57430.1| RNA dependent RNA polymerase family protein [Trichinella spiralis]
Length = 1417
Score = 210 bits (534), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 154/478 (32%), Positives = 246/478 (51%), Gaps = 43/478 (8%)
Query: 236 YRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL 295
Y K + S + L V V +V +TP+RV P+ +SNR+LR F D+ L
Sbjct: 374 YDKQCSLTDNDYSIELDLAAPYVSVRKVVITPTRVLLSVPDKMMSNRILRQFGSDLA--L 431
Query: 296 RISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQ 355
R+ F DE +I A+ + T + + + + G+ IG R ++FL +S+SQ
Sbjct: 432 RVIFRDEGGTRI----------PASKFSLTSLKQIVTTVMMKGLAIGPRLYQFLGWSNSQ 481
Query: 356 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV--HMDEI 413
LR+ + +AS + EIR WMG+F IR+V K +R+GQ F+ + ++ + D
Sbjct: 482 LRDHGCYFYASTEQVNVEEIRRWMGDFSSIRSVPKLMSRMGQCFTQAFAITAIPFNPDSK 541
Query: 414 EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD 473
E++ + I+ +K+ FSDGIG++S + A +VA + L PSAFQIRY G+KG++ D
Sbjct: 542 EVLIETDIQSSDSKFCFSDGIGRMSTKLAEEVAERLELWP-VPSAFQIRYAGFKGMLCVD 600
Query: 474 P--TSSKKLSLRDSMRKYESE-LTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWD--EI 526
P K+ R SM K+ +E L+++ S QPC LNR LI +L + + +
Sbjct: 601 PRLDGDVKMVFRQSMHKFHTEGAHTLEIVKHS--QPCEVNLNRPLIMILDQVAFKEGVPV 658
Query: 527 FEKKQREAVRQLDAILTD----PLKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLS 581
+ Q ++ LD + + L +A ++S ++ + ++L G++ EPF
Sbjct: 659 NGRVQNRIMQLLDQQICELSQMLLFEDQAKSVLSATMHSEMNFEKLADAGFRFTEEPFFR 718
Query: 582 MMLQTFRASKLLE--LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE 639
ML K+ E R K I GR+M G +DE L+ GQVF+Q S R GE
Sbjct: 719 NMLLACYKFKVKEKLFRMKIEIDPSLGRTMYGVMDELGLLHPGQVFIQCSANILRP--GE 776
Query: 640 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+ ++ G V+V K+P + PGDVR+L AV++ H++ D +VFP+ G R
Sbjct: 777 D----------KRVITGKVMVTKSPSVVPGDVRILTAVDLEIYHYLNDVIVFPKIGYR 824
>gi|258569467|ref|XP_002543537.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903807|gb|EEP78208.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1004
Score = 209 bits (533), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 147/485 (30%), Positives = 245/485 (50%), Gaps = 67/485 (13%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
V V+R QVTPS +Y GP I NRVLR + I++FLR+ F+DE D+++ P+ S
Sbjct: 429 VKVNRTQVTPSGIYLYGPNIETKNRVLRQYDNHINHFLRVEFVDEHGDRVY---YDPQAS 485
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 372
Y R L+NGI IG R+F FL FS S LR + W F + G
Sbjct: 486 -----LEEIFYQRFKGVLKNGIQIGGRRFSFLGFSHSSLRSQTCWFVAPFITNTGERFDV 540
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII-PDVKIEIGKTKYVFS 431
I + +G+F I + +K AAR+GQ+FS ++ ++ + D + PD+K + VFS
Sbjct: 541 ESIIQGLGSFDHIYSPSKLAARIGQTFSETQSSIKIPEDAVYFDEPDIK----RNGRVFS 596
Query: 432 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYG----------------------GYKG 468
DG+G +S K+ + L++ P+ FQIR+ G KG
Sbjct: 597 DGVGTMSPSIMYKIWKEYALRERVKPTIFQIRFAGNSLPSTFPCYPTANTVFCIILGAKG 656
Query: 469 VVAADPT-SSKKLSLRDSMRKYESELT-KLDVL-AWSKYQPCFLNRQLISLLSTLGIWDE 525
+V+ D +L LR+SM K++++ +++ + ++ P +LN QLI +L LG+
Sbjct: 657 MVSLDSRLKGDQLKLRESMIKFKAKGAFNIEICGSGTRALPFYLNAQLIKVLEDLGVRPS 716
Query: 526 IFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN---ILKELLICGYKPDAEPFLSM 582
F Q + + +L ++ +KA + LE + + +++ + D +PFL
Sbjct: 717 AFIDLQTDEIDRLRSVEKSVIKAGQFLEQTNIAQGVRLPWLIQVIRGLELHHDQDPFLRS 776
Query: 583 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ-ISGAGYRQLHGESS 641
++Q K+ +L+ + RI +PN ++ G +DE+ L G++F ++ G R++
Sbjct: 777 VIQLAVFLKMRDLKYRARIRVPNAVTLYGIMDESGYLKEGEIFCTFLTEGGVREI----- 831
Query: 642 LFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRY 698
+V+ ++V ++P LHPGDV+ AV+VPA L + +CVVF Q G R
Sbjct: 832 -----------LVRDRIIVTRSPALHPGDVQFANAVDVPATSPLRKLHNCVVFSQHGQRD 880
Query: 699 ILTML 703
+ +ML
Sbjct: 881 LPSML 885
>gi|342878783|gb|EGU80072.1| hypothetical protein FOXB_09347 [Fusarium oxysporum Fo5176]
Length = 1277
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 152/471 (32%), Positives = 237/471 (50%), Gaps = 37/471 (7%)
Query: 250 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 309
+ + D +Y+ + VTP+RV GPE + NRVLR + + D FLR+ F +ED +
Sbjct: 429 GVKIPDHQIYIFKAMVTPTRVLLSGPEPDSKNRVLRKYHENNDYFLRVLFCEEDGQDL-- 486
Query: 310 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA---- 365
+ P+ + I+ R + GI I RKF+FL FS S LR SAW A
Sbjct: 487 -NFHPK------VDNEPIFARFRHVMDEGITIAGRKFDFLGFSHSSLRSHSAWFSAPFTD 539
Query: 366 SRYG-LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI--EIIPDVKIE 422
S + T A I + +G+F EIR AK AAR+GQ+FS + + + I IPDVK E
Sbjct: 540 SNFERQTPAAILQALGDFSEIRVPAKCAARIGQAFSETPYAIPIFETGICHRFIPDVKSE 599
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL 482
G VFSDG+G +S E ++ ++ P+ QIR+GG KG+++ D ++
Sbjct: 600 DGTR--VFSDGVGTISREALEEIWPYLSMRAAAPTCLQIRWGGCKGMLSLDTRLKGRVFC 657
Query: 483 --RDSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 538
++SM K+ S +L +L + A SK LNRQ+I +L +G ++ F + Q A+ L
Sbjct: 658 IRQESMMKFPSDDLRELGICDASSKPLRLVLNRQMIKILEDMGTTNDWFFRLQNNALDIL 717
Query: 539 DAILTDPLKAQEALELMSPGENTN---ILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 595
D L+ + G N ++K+L G + FL ++ +L L
Sbjct: 718 RNATADATNTSYFLDYQAIGVNMGLPKLVKQLEKMGIDYRRDKFLKSAVEHVVFRELRLL 777
Query: 596 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 655
+ K RI + G ++ G +DET L+ +VFV Y + HG R +
Sbjct: 778 KHKARIPVDKGVTLFGVMDETGFLDADEVFVT-----YDKTHG----VYRGRRINSTLKD 828
Query: 656 GLVVVAKNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRYILTML 703
G ++V ++P LHPGD++++ V P +L + +C+VF QKG R + +ML
Sbjct: 829 GQIIVTRSPALHPGDIQIVNQVTPPQGHSLRSLQNCIVFSQKGKRDLPSML 879
>gi|408389379|gb|EKJ68835.1| hypothetical protein FPSE_11001 [Fusarium pseudograminearum CS3096]
Length = 1277
Score = 209 bits (532), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 151/465 (32%), Positives = 238/465 (51%), Gaps = 41/465 (8%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
++V + VTP+R+ GPE NRVLR + D FLR+ F +ED + P+
Sbjct: 438 IWVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLRVLFCEEDGQDLR---FHPK-- 492
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTAA 373
+ IY++ + +GI I RKF+FL FS S LR SAW A + L +
Sbjct: 493 ----VDNEPIYSQFRRMMDHGIQIAGRKFDFLGFSHSSLRSHSAWFSAPFVDKDHQLQSP 548
Query: 374 E-IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI--EIIPDVKIEIGKTKYVF 430
E I + +G+FR+IR AK AAR+GQ+FS + + + + I IPDVK E G VF
Sbjct: 549 EAILQALGDFRDIRVPAKCAARIGQAFSETPYAVPISENNIVPRYIPDVKSEDGSR--VF 606
Query: 431 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL--RDSMRK 488
SDG+G +S E + + P+ QIR+GG KG+++ D K+ ++SM K
Sbjct: 607 SDGVGTISQEALESIWPYLSMNSAAPTCLQIRWGGCKGMLSLDTRLEGKVFCIRQESMMK 666
Query: 489 YESELTKLDVLAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
++SE T + + +P LNRQ+I +L +G DE F + Q A+ L + D
Sbjct: 667 FKSEDTGELGICDTASKPLRLVLNRQMIKILEDMGTRDEWFFELQNNALDILRNVTADAT 726
Query: 547 KAQEALELMSPGENTNILK-----ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
LE + G N + + E + Y+ D FL ++ +L L+ K RI
Sbjct: 727 NTSSFLEHHAIGINMGLPRLVKQLEKMDIDYRRDK--FLKAAVEHVVLRELRLLKHKARI 784
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
+ NG ++ G +DET L G+V+V Y + +G ++ R + + G ++V
Sbjct: 785 PVDNGVTLFGIMDETGFLKEGEVYVT-----YDKTYGR----NNGRGIKSTLTDGEIIVT 835
Query: 662 KNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRYILTML 703
++P LHPGD++++K V P +L + +C++F QKG R + +ML
Sbjct: 836 RSPALHPGDIQLVKQVTPPQGHSLRSLQNCIIFSQKGKRDLPSML 880
>gi|241633126|ref|XP_002410398.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503415|gb|EEC12909.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 209 bits (531), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 136/333 (40%), Positives = 185/333 (55%), Gaps = 18/333 (5%)
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMD--EIEIIPDV---KIEIGKTKYV 429
IR WMG+F I +VAK AR+GQ FSS++E++ V +D +E PD+ K ++
Sbjct: 1 IRRWMGDFSNIPSVAKKMARMGQCFSSTEESVKVPLDGKAVEDRPDIVGGKHPRSGRPFI 60
Query: 430 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRK 488
FSDGIG +S KV K + PSA QIRY GYKG++ +P KL LR+SMRK
Sbjct: 61 FSDGIGMISQPLLEKVCKKLEMA-QIPSAIQIRYAGYKGMLCVNPLLPGDKLVLRESMRK 119
Query: 489 YE-SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL-DAILTDPL 546
+ S L+V+ S +P LNR LI++L LG+ +F Q++ V DA++ +
Sbjct: 120 FTCSSSDSLEVIKVSAPRPVCLNRPLITILEQLGVPSRVFLCLQQKMVLMFADALVCEST 179
Query: 547 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP-- 604
Q +S L+ +C + PF+ +L T S + L TK+RI +P
Sbjct: 180 ALQVLCTYLSGALPFRRLRMHGLCLTR---NPFVRSLLYTVYKSTMDGLHTKSRIAVPLN 236
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 664
GR+M+G LDET TL YGQVFVQ + G G+ +R G V+V K P
Sbjct: 237 KGRNMLGVLDETDTLKYGQVFVQYTALG-PDTEGQDDGLPKTRI---IFCTGAVLVTKCP 292
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
CLHPGDVR AV+VPALHH+ DCVVFP +G R
Sbjct: 293 CLHPGDVRKFTAVDVPALHHVKDCVVFPARGPR 325
>gi|46109400|ref|XP_381758.1| hypothetical protein FG01582.1 [Gibberella zeae PH-1]
Length = 1467
Score = 208 bits (530), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 154/468 (32%), Positives = 236/468 (50%), Gaps = 47/468 (10%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE---DLDKIHSTDLSP 314
++V + VTP+R+ GPE NRVLR + D FLR+ F +E DL D P
Sbjct: 438 IWVFKALVTPTRLLLDGPEAESKNRVLRKYADYNDYFLRVLFCEEGGQDLRFHPKVDNEP 497
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-----SRYG 369
IY++ + +GI I RKF+FL FS S LR SAW A R
Sbjct: 498 ------------IYSQFRRMMDHGIQIAGRKFDFLGFSHSSLRSHSAWFSAPFIDKDRQL 545
Query: 370 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI--EIIPDVKIEIGKTK 427
+ I + +G+FR+IR AK AAR+GQ+FS + + + + I IPDVK E G
Sbjct: 546 QSPEAILQALGDFRDIRVPAKCAARIGQAFSETPYAVPIFENNIVPRYIPDVKSEDGSR- 604
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL--RDS 485
VFSDG+G +S E + + P+ QIR+GG KG+++ D K+ ++S
Sbjct: 605 -VFSDGVGTISQEALEAIWPYLSMNSAAPTCLQIRWGGCKGMLSLDTRLEGKVFCIRQES 663
Query: 486 MRKYESELTKLDVLAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 543
M K++SE T + + +P LNRQ+I +L +G DE F + Q A+ L +
Sbjct: 664 MMKFKSEDTGELGICDTASKPLRLVLNRQMIKILEDMGTRDEWFFELQNNALDILRNVTA 723
Query: 544 DPLKAQEALELMSPGENTNILK-----ELLICGYKPDAEPFLSMMLQTFRASKLLELRTK 598
D LE + G N + + E + Y+ D FL ++ +L L+ K
Sbjct: 724 DATNTSSFLEHQAIGINMGLPRLVKQLEKMDIDYRRDK--FLKAAVEHVVLRELRLLKHK 781
Query: 599 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLV 658
RI + NG ++ G +DET L G+V+V Y + +G ++SR + + G +
Sbjct: 782 ARIPVDNGVTLFGIMDETGFLKEGEVYVT-----YDKTYGR----NNSRGIKSTLTDGEI 832
Query: 659 VVAKNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRYILTML 703
+V ++P LHPGD++++K V P +L + +C+VF QKG R + +ML
Sbjct: 833 IVTRSPALHPGDIQLVKQVTPPQGHSLRSLQNCIVFSQKGKRDLPSML 880
>gi|156045453|ref|XP_001589282.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980]
gi|154694310|gb|EDN94048.1| hypothetical protein SS1G_09915 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1184
Score = 208 bits (529), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 153/463 (33%), Positives = 226/463 (48%), Gaps = 50/463 (10%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
VHRV +TP+ Y GPE +NR+LR + NF+R++F DED +I A
Sbjct: 420 VHRVTITPAGFYLEGPEAESNNRILRKYAGSHGNFVRVNFCDEDGGRIQ---------YA 470
Query: 320 TDITRTRIYTRIL-STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAE 374
+++ I+ + + L+NG I +K+E+L S S LR S W A + A
Sbjct: 471 SNVANDEIFDGVFKNILKNGFSIASQKYEYLGSSHSSLRTQSCWFVAPFFNKEGYHDAQH 530
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKE--TLSVHMDEIEIIPDVKIEIGKTKYVFSD 432
I +GNF IR+ AK AAR+GQ+FS + TL IE IPDV+ + VFSD
Sbjct: 531 IIHDLGNFTAIRSPAKCAARIGQAFSDTPNAITLDKRTVTIERIPDVE----RNGRVFSD 586
Query: 433 GIGKVSAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE 490
G+G +S K+ K K P+ FQIRY G KG+++ D L LR+SM K++
Sbjct: 587 GVGTMSESLMHKIWEKLPNKKFVKPTCFQIRYQGAKGMISLDTRLPGDHLRLRESMIKFD 646
Query: 491 SELTKLDVLAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 548
++ + Y+P +LNRQ I +L LG+ E F K Q + V +L AI + A
Sbjct: 647 GSISNDLEICGGAYKPLSMYLNRQFIKILEDLGVEPEYFMKLQEKEVTRLRAITANTYNA 706
Query: 549 QEALELMSPGENTNILKELLICGY-----KPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
LE G+ + + C Y + D FL +L+ +L L+ K RI +
Sbjct: 707 STFLERKRVGDVVLLPYLIEHCSYLNLDFRNDV--FLRDVLEMAVLIELRTLKHKARIPV 764
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
G + G +DET L G+++ G R +VQ VV+ +
Sbjct: 765 EKGYHLHGIMDETGILKEGEIYCCWLEDGKRTT----------------LVQSSVVITRA 808
Query: 664 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
P LHPGDV++ AV+VP+ L + +C+ F QKG R + + L
Sbjct: 809 PALHPGDVQLANAVDVPSNSPLKRLYNCICFSQKGARDLPSQL 851
>gi|296810484|ref|XP_002845580.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238842968|gb|EEQ32630.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1152
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 147/463 (31%), Positives = 241/463 (52%), Gaps = 45/463 (9%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
V VHR VTP +Y GP V NR+LR + + D FLR+ F+DE+ D + P +
Sbjct: 363 VLVHRAMVTPCGIYLLGPYAEVKNRILRKYLGNTDYFLRVEFLDENGDPVF---FDPNAN 419
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG------LT 371
+ R ++ GI + R F FL FS S LR + W FA+ + L
Sbjct: 420 -----LEKIFHERFSGVMKRGIEVAGRNFNFLGFSHSSLRSQTCW-FAAPFTTPDGEYLD 473
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVF 430
A I +G+F IR+ +K AAR+GQ+FS + ++SV + + + +PDV+ + +F
Sbjct: 474 ARTIINSIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEAVRLRVPDVE----RNGRIF 529
Query: 431 SDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRK 488
SDG+G +S E K+ ++ L++ P+ FQIR G KG+V+ D + + L LR+SM K
Sbjct: 530 SDGVGVISRELMYKIWNEYALREKVKPTVFQIRIAGAKGMVSLDTSRQGEFLMLRESMVK 589
Query: 489 YESELT-KLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
+ ++ + +++ A K P +LN Q+I +L LG+ F + Q++ + L +
Sbjct: 590 FPTDDSYNIEICGAGIKALPFYLNSQIIKILEDLGVPFAAFHQLQQDEILSLYSTFNSTE 649
Query: 547 KAQEALE---LMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
+A + LE + +L L G + +PFL +++ KL +L+ + RI +
Sbjct: 650 QAAKFLEDSPVPRSLRLPWLLLVLKGLGLRYTLDPFLHRIMELTTLLKLRDLKYRARIRV 709
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
PN ++ G +DET L +++ +F S R+ +V+ VVV ++
Sbjct: 710 PNAVTLYGIMDETGYLKENEIYC---------------VFLSEDGRREILVRDNVVVTRS 754
Query: 664 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
P LHPGDV+V+ AV+VPA L + +CV F Q G+R + +ML
Sbjct: 755 PALHPGDVQVVNAVDVPANSPLRRLHNCVAFSQHGVRDLPSML 797
>gi|358366477|dbj|GAA83098.1| rna-dependent rna polymerase [Aspergillus kawachii IFO 4308]
Length = 1212
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 160/593 (26%), Positives = 273/593 (46%), Gaps = 68/593 (11%)
Query: 156 DLVPIVGPPDGI-------------------ALPYEILFKINLLVQNGCVAGPLLDSNFY 196
D++PI PP G +LP+ ILF++ L N + + S
Sbjct: 283 DILPINTPPKGAFQVQLKALMDELATCTRNNSLPFGILFQLQALAYNAYLLPRTVQSLTQ 342
Query: 197 RLVDPYR-------APVSISCIEHALDKLY----HLKECCYEPSRWLT--DQYRKYMTSR 243
LV YR P+S+ ++ D + H YE + Q +K +
Sbjct: 343 ELVKAYREDTAAQRKPISVLALKKLFDMIDWPSPHSNPTDYEVGALMAALKQNQKDVLQD 402
Query: 244 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 303
S + + L +H+V VTP+RV GPE+ NR+LR F + D F+R+ F DE+
Sbjct: 403 LAVSGDILGPSENLTPIHKVMVTPTRVTLHGPELEPRNRILRRFPKHHDFFIRVQFCDEN 462
Query: 304 LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM 363
+H + + +++R S L GI I R + FL +S S LR + W
Sbjct: 463 GQDLHFN---------SRVHYDDVFSRFKSVLTRGIQIAGRTYSFLGWSHSSLRSHAVWF 513
Query: 364 ---FASRYGL--TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPD 418
F G T I + +G+F +I++ A+ AAR+GQ+F+ + +S+ +I +
Sbjct: 514 SSPFVDESGQFQTHFSIIKALGDFSKIQSPARCAARIGQAFTDTHYAISLSEYDINVSEV 573
Query: 419 VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SS 477
+ K VFSDG+G +S + A + K P+ FQ+R GG KG++A D S
Sbjct: 574 ADVTSNDGKRVFSDGVGTLSWDVAETIWHHIPEKKGLPTCFQVRLGGAKGMLAVDGRLSG 633
Query: 478 KKLSLRDSMRKYESELTKLDVLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 536
++++R SM K++ ++ L++ +K LNRQ+I +L +G DE F Q A+
Sbjct: 634 SQVNIRPSMIKFQGDMKDLEICDMAAKPMGLVLNRQMIKILEDMGTPDEWFITLQEAALT 693
Query: 537 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKP---DAEPFLSMMLQTFRASKLL 593
+L ++ ++ ++ + G++ + + C + EPF+ +++ +L
Sbjct: 694 KLRSVTASAHNSEVFIKKQAVGDSIGLYRLFRHCHLRDLDYKKEPFIRSVVEAVVLKELR 753
Query: 594 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFI 653
L+ K RI + G ++ G +DET L QV+V Y + G + +S
Sbjct: 754 LLKHKARIPVFKGITLFGVMDETGLLEAEQVYVT-----YEPVEGRHAPPPNS------- 801
Query: 654 VQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
G V+V ++P LH GD++ + V P H + +C+VF KG R + + L
Sbjct: 802 --GTVLVTRSPALHDGDIQYAQNVIPPDNHPLAELTNCIVFSSKGYRDLPSQL 852
>gi|302510543|ref|XP_003017223.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
gi|291180794|gb|EFE36578.1| hypothetical protein ARB_04100 [Arthroderma benhamiae CBS 112371]
Length = 1233
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 146/463 (31%), Positives = 241/463 (52%), Gaps = 45/463 (9%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
V VHR VTP+ +Y GP NR+LR + +ID F+R+ F+DE D + P +
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDPSAN 472
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 372
+ R ++ GI I R+FEFL FS S LR + W F + G L A
Sbjct: 473 -----LEQIFHQRFAGVMKRGIEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDYLNA 527
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFS 431
I +G F IR+ +K AAR+GQ+FS + ++SV + + + PDVK + +FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVK----RNDRIFS 583
Query: 432 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY 489
DG+G +S + ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM K+
Sbjct: 584 DGVGVISCDLMHRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 490 ES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 547
+ +L +++ A + P +LN Q+I +L LG+ E F + QR+ + L + + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQRDEINFLYSTFSSTER 703
Query: 548 AQEALELMSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
A + LE SP + L L + G + +PFL +++ +L +L+ + RI +
Sbjct: 704 AAKFLE-DSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRV 762
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
PN ++ G +DET L +++ ++ R+ +V+ VV+ ++
Sbjct: 763 PNAVTLYGIMDETGYLKENEIYC---------------VYLGENGRREILVRDNVVITRS 807
Query: 664 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
P LHPGD++V+ AV+VPA L + +CV F Q G R + +ML
Sbjct: 808 PALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSML 850
>gi|301106324|ref|XP_002902245.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
gi|262098865|gb|EEY56917.1| RNA-dependent RNA Polymerase1 (RDR1) [Phytophthora infestans T30-4]
Length = 2680
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 159/487 (32%), Positives = 250/487 (51%), Gaps = 60/487 (12%)
Query: 232 LTDQYRKYM-----TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRH 286
+TDQ+ ++ T +SP+++ + V++V VTPSR+ +C P+ SNRV RH
Sbjct: 1071 ITDQFSSFLKEERSTLEGLCTSPSLNPES---IVYKVIVTPSRIVYCPPDPAPSNRVFRH 1127
Query: 287 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILI----G 342
+ + NF+ + F D++++++ D I RI + L+NGI I G
Sbjct: 1128 WGSE--NFMYVYFRDDNMERL-------------DFRSVTILERIRNVLKNGIEIPHVSG 1172
Query: 343 DRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSS 402
KF FL S SQ+R SSA +F L +R W+G+ + + AKY RLGQ+FSS+
Sbjct: 1173 GLKFRFLGCSLSQVRNSSA-IFTR---LDHHAVRLWIGDLSLLTSPAKYLKRLGQAFSST 1228
Query: 403 KETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR 462
K+T V ++ D +I +YVF+DG G++ A + + L PSAFQ+R
Sbjct: 1229 KDTFEVSRSVLDNPVD---DIENDQYVFTDGCGEIGLVGAESIVRELQLS-YTPSAFQVR 1284
Query: 463 YGGYKGVVAA------DPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISL 516
GG KGV+ D + + + LR SM K+ S T L+++A + +L RQ + +
Sbjct: 1285 LGGAKGVLVVSDLGNPDISREEAVVLRKSMSKFSSNHTMLEIVACAGKSEAYLTRQSVLI 1344
Query: 517 LSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE---NTNILKELLICGYK 573
L+ LGI +++F + Q E + L +++ A L+ + P ++L L K
Sbjct: 1345 LNDLGINEDVFMEMQEEFLSDLRSLIASDSGAYFGLKAVLPPSVIWRIDVLVRKL--EVK 1402
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 633
+ +LS + +T +L + RI I GR++MG D T TL YG+VFVQ S
Sbjct: 1403 ILVDEYLSSLARTIYHYRLANTVMRARIPIAKGRTLMGVADFTGTLEYGEVFVQYSDTD- 1461
Query: 634 RQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKA-VNV-PALHHMVDCVV 690
+ G S ++ G+ V V ++PC HPGD+RVL+ +V P L + DC+V
Sbjct: 1462 -EETGNDSY---------VLLDGIDVAVHRSPCHHPGDIRVLRCRTDVPPQLRQLKDCIV 1511
Query: 691 FPQKGMR 697
FP KG R
Sbjct: 1512 FPSKGPR 1518
>gi|324500541|gb|ADY40252.1| RNA-dependent RNA polymerase EGO-1 [Ascaris suum]
gi|333440978|gb|AEF32764.1| RdRP1 [Ascaris suum]
Length = 1644
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 150/483 (31%), Positives = 241/483 (49%), Gaps = 63/483 (13%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
DG V +V +TP+R+ F PE+ + NRVLR+F +D + LR+ F D+D ++ + P
Sbjct: 540 DGYQRVRKVVITPTRMLFVVPELLMGNRVLRNFDKDGNGSLRVQFRDDDSSQLRRNTVGP 599
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 374
I + + +TL GI IG R F +L S+SQLR++ + F G A
Sbjct: 600 ----------FLIQSTVFNTLTRGIHIGSRHFVYLGSSNSQLRDNGCYFFDDGKGGHAQW 649
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK----YVF 430
IR +G F + N+ K +R+GQ F+ +K+ +V + + + G+ Y+F
Sbjct: 650 IRTQLGKF-DRGNIPKMMSRMGQCFTQAKQC-AVVLKRHKYNKTWDVIGGRDSRGEPYIF 707
Query: 431 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK----------- 479
SDG+G++S EFA K+A L + PS FQIR+ G KGV++ DP +
Sbjct: 708 SDGVGRLSQEFAEKIAKDINLANAVPSCFQIRHRGMKGVLSVDPLLDDRKQWAIAHGIKD 767
Query: 480 ------------LSLRDSMRKYESELTK-LDVLAWSKYQPCFLNRQLISLLSTLG----- 521
+ R S K+++ + ++++ +S LNR +IS+L +
Sbjct: 768 GSMATSRINDLAVVFRPSQDKFKAPRDEAIEIVKYSSPTCVSLNRPMISILDQVSSMQGH 827
Query: 522 -----IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDA 576
+ + I E + + +L I D + ++ L + N + L L+ G+
Sbjct: 828 TVHMTVTERIHELLDMQLM-ELAEIFLDEDRCRDKLNELPRLMNVDRLS--LVRGFALTQ 884
Query: 577 EPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYR 634
EPF +L+ L + K +I IP+ GRSM G +DET L GQ+FVQ + +
Sbjct: 885 EPFFRSLLRASVRYTLKKQLAKEQILIPSHLGRSMFGVMDETGQLQSGQIFVQYTNNVW- 943
Query: 635 QLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQK 694
L + + I++G V++ KNPC+ GDVR+L+AV++P LHH+VD VVFPQ
Sbjct: 944 -------LKNPPPRAAKTILKGPVLMTKNPCIVAGDVRLLEAVDIPELHHLVDVVVFPQY 996
Query: 695 GMR 697
G R
Sbjct: 997 GPR 999
>gi|169625035|ref|XP_001805922.1| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
gi|160705585|gb|EAT76879.2| hypothetical protein SNOG_15784 [Phaeosphaeria nodorum SN15]
Length = 1234
Score = 206 bits (525), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 237/479 (49%), Gaps = 57/479 (11%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
D +V H+ +TP+ ++ GP+ + SNR+LR + + D F+R+SF DED + P
Sbjct: 429 DHVVLTHKATITPTGIFLRGPDADTSNRILRKYSQYTDYFMRVSFTDEDGVSVFH---DP 485
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS----RYGL 370
+ S + +Y R LR GI + R FEFL FS + LR W AS +
Sbjct: 486 KAS------QHEVYERFRKILREGIHVAGRHFEFLGFSHASLRCHQVWFMASFIFKGLPI 539
Query: 371 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
A ++ + +G+F A+ AAR+GQ+FS + +V + I + K +I + VF
Sbjct: 540 CARDVIQNLGDFNGFTCSARCAARIGQAFSDT--IFAVQIPSTATILETKEDITRNNRVF 597
Query: 431 SDGIGKVSAEFARKVASKCGLKD--NPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMR 487
SDG G +S E + + K + P+ QIR G KGV++ D + ++L +R SM
Sbjct: 598 SDGCGTMSLELFQLLWRKLNPQQRRKRPTVLQIRCRGAKGVLSLDSSLVGEELHIRKSMT 657
Query: 488 KY--ESELTKLDVLAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 543
K+ SE L++ + + Y+P +LN Q I +L LG+ + F K Q EA +QL+ I+
Sbjct: 658 KFIAGSEWRDLEICS-AAYRPLRVYLNHQFIKILEDLGVPPQNFIKVQNEARKQLELIVK 716
Query: 544 DPLKAQEALELMSPGENTNI---------------LKELL-ICGYKPDAEPFLSMMLQTF 587
PL A + L TNI L EL+ G + FL +++
Sbjct: 717 HPLNAADFLR----KHKTNIRTGYSHSADHAKIPRLFELMHYAGLSFQTDQFLCEIVEVA 772
Query: 588 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR 647
S + +L+ + RI + +G + G +DET TL G+V+V S R
Sbjct: 773 AMSSIRDLKYRARIPVESGHLLYGIMDETNTLKEGEVYVATEDET-----------PSGR 821
Query: 648 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRYILTML 703
+ ++ VVV + P LHPGDV+++ AVNVP L + +C+VF Q+G R + + L
Sbjct: 822 REKNILIGDRVVVTRAPALHPGDVQLVSAVNVPDGSPLRSLHNCIVFSQQGARDLPSQL 880
>gi|315045169|ref|XP_003171960.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
gi|311344303|gb|EFR03506.1| RNA-dependent RNA polymerase 1 [Arthroderma gypseum CBS 118893]
Length = 1204
Score = 206 bits (523), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 148/463 (31%), Positives = 242/463 (52%), Gaps = 45/463 (9%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
V VHR VTP +Y GP NR+LR + +ID F+R+ F+DE D + P +
Sbjct: 416 VLVHRAMVTPCGIYLSGPYTETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDPSAN 472
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 372
+ + R ++ GI I R FE+L FS S LR + W F + G L A
Sbjct: 473 -----LESIFHQRFAGVMKRGIEIAGRVFEYLGFSHSSLRSQTCWFAAPFTTANGDYLDA 527
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFS 431
I +G+F IR+ +K AAR+GQ+FS + ++SV + +++ PDVK + VFS
Sbjct: 528 KTIIGNIGHFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVKMKAPDVK----RNGRVFS 583
Query: 432 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY 489
DG+G +S E ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM K+
Sbjct: 584 DGVGVISRELMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRKKGEFLMLRESMVKF 643
Query: 490 ES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 547
+ +L +++ A + P +LN Q+I +L LG+ E F + Q++ + L + + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEISFLYSTFSSIER 703
Query: 548 AQEALELMSPGENTNILKELLI----CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
A LE SP + L LL+ G + +PFL +++ +L +L+ + RI +
Sbjct: 704 AANFLE-ESPVPRSLRLPWLLLVLKSLGIRYSQDPFLQRVMELTMLLRLRDLKYRARIRV 762
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
PN ++ G +DET L +++ ++ + R+ +V+ VV+ ++
Sbjct: 763 PNAVTLYGIMDETGYLKENEIYC---------------VYLAENGRREILVRDNVVITRS 807
Query: 664 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
P LHPGDV+V AV+VPA L + +CV F Q G R + +ML
Sbjct: 808 PALHPGDVQVANAVDVPANSPLRKLHNCVAFSQFGTRDLPSML 850
>gi|347841951|emb|CCD56523.1| hypothetical protein [Botryotinia fuckeliana]
Length = 717
Score = 205 bits (522), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 130/391 (33%), Positives = 208/391 (53%), Gaps = 28/391 (7%)
Query: 146 ETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAP 205
+T A RSLD + + LP+E+ +++ + + V +D F + A
Sbjct: 344 KTTQAGLRSLDPSSV-----KVNLPFEVRYQLEVCISREIVNEYNIDEKFINSL----AE 394
Query: 206 VSISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQV 265
+S A + L ++ E + S+ L D + S + S + + + V
Sbjct: 395 LSAQDPAKARNLLEYVAE--HYSSKRLYDPSSIFTNSEALSFSALTDIPHYCAFSRKATV 452
Query: 266 TPSRVYFCGPEINVSNRVLRHFRRDIDN--FLRISFIDEDLD-KIHSTDLSPRGSSATDI 322
TP+ + F P + +NRVLRH+ ++ FLR+ F DE + +I+S A I
Sbjct: 453 TPTSILFNSPTVETTNRVLRHYSKENQEGRFLRVQFTDEKFEGRINSC--------ADKI 504
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNF 382
I+TR+ + NGI IGDR +EFLAF +SQ RE+ A+ F L+ +IR+WMG F
Sbjct: 505 RNDAIFTRVFRVISNGIRIGDRHYEFLAFGNSQFRENGAYFFCPSANLSCNDIRQWMGTF 564
Query: 383 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 442
I VAKYAARLGQ FS+++ + +I IPD IG+ +Y F+DG+GK+S A
Sbjct: 565 SHINVVAKYAARLGQCFSTTRAIKGLSAPDIVKIPD----IGRGRYCFTDGVGKISPYLA 620
Query: 443 RKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLA 500
+ +AS+ L+ D PSAFQ R GG KG++ P + ++ +R S +K+ + L+++
Sbjct: 621 QMIASELKLRVDLAPSAFQFRLGGCKGILVVSPDAKDNEVHIRKSQQKFTAAYNGLEIIR 680
Query: 501 WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 531
S++ LNRQ I++LS LG+ DE E+++
Sbjct: 681 CSQFSSATLNRQTITILSALGVKDECNEQQR 711
>gi|328855950|gb|EGG05073.1| hypothetical protein MELLADRAFT_64236 [Melampsora larici-populina
98AG31]
Length = 1240
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 153/469 (32%), Positives = 248/469 (52%), Gaps = 66/469 (14%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 322
V +TPSR GP SN VLR +R D NFLRIS +E+ L+ R DI
Sbjct: 446 VTITPSRFILEGPVTEQSNSVLRMYR-DTHNFLRISIREEN-------GLTLRPDRDVDI 497
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREW 378
R + TR L L G+ + RKFEFL +SSS LRE AW Y +TAA IR+
Sbjct: 498 LRL-LKTRYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFYKGDSLVTAASIRQR 556
Query: 379 MGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 437
+G+F ++ N+ A+Y AR+ Q+F+S++++L++ +I I DV+ + F+DG+G +
Sbjct: 557 LGDFSKVINIPARYMARVAQAFTSTRQSLTLLPSQIVRIEDVE----RNGSCFTDGVGTI 612
Query: 438 SAEFARKVAS--KCGLKDNP------PSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRK 488
S + AR+V GL S FQIR GG+KG+++ DPT + + +R SM K
Sbjct: 613 SPDLARQVDEVLSAGLPSRKRRHHANSSCFQIRLGGFKGMLSVDPTLKQACVCVRPSMDK 672
Query: 489 YES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
+ S + LD+ ++++ P +LNR +I +L LGI +++F QRE V +++ T+
Sbjct: 673 FVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQREIVSKVEHSRTNLR 732
Query: 547 KAQEALELMSPGENT---NILKEL-LICGYKPDA------EPFLSMMLQTFRASKLLELR 596
+A E ++ +S + +IL++L + G + + E + M++Q FR +L+
Sbjct: 733 RASELMDQLSMARTSGMPSILRQLGTLMGDESNTQSDFIEECYDLMIMQCFR-----DLK 787
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
+ RI + +++G DE + L V+ I G + F ++G
Sbjct: 788 YRARIPLDASYTLVGVADEDQVLPPNFVYACIQYPG----------------KAPFYLEG 831
Query: 657 LVVVAKNPCLHPGDVRVLKAVN------VPALHHMVDCVVFPQKGMRYI 699
+ ++++PCLHPGDVRV+ + P L+ + +CVVF GMR +
Sbjct: 832 PITISRSPCLHPGDVRVVTGIGKLDLERAPRLNALRNCVVFSVAGMRSL 880
>gi|241997884|ref|XP_002433585.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215495344|gb|EEC04985.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 528
Score = 205 bits (521), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 132/340 (38%), Positives = 182/340 (53%), Gaps = 30/340 (8%)
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI----------- 423
IR+ +G+ IR+V K AR+GQ+FS S ++V + DV+
Sbjct: 1 IRQGIGDLSSIRSVPKLMARMGQAFSQSLGFVTVPRQYTAVEADVRCRAPPGASAAALAE 60
Query: 424 -GKTKYVFSDGIGKVSAEFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADPT-SSKKL 480
K Y+FSDGIG++S RKV L+D P A QIRYGG KG++ DPT + +++
Sbjct: 61 AAKRDYIFSDGIGRISPALMRKVYRSLELEDGEEPCAVQIRYGGCKGMLLVDPTMAGRRI 120
Query: 481 SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
R SM K+ S+ L VL SK + +LNR +I++L GI + F Q R LD+
Sbjct: 121 VFRTSMCKFPSDHEDLYVLKTSKPRVLYLNRPMITILEQSGIRAKAFLALQN---RVLDS 177
Query: 541 ILTDPLKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
+ L A EA +++ + KEL G EPF +++ L E TK
Sbjct: 178 FINSMLDAHEAAQVLCGYCALRLPYKELAGVGVDLTVEPFFRGLIRAVNRKVLSEWLTKA 237
Query: 600 RIFIP--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 657
RI +P GR+M G LDET TL YGQVFVQ S + +F + I++G
Sbjct: 238 RILVPPEKGRTMFGVLDETDTLEYGQVFVQYS----------NDMFRYKATDPATILKGD 287
Query: 658 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
V+V KNPC+HPGD+R L AV+VP LHH+ DC+VFP KG R
Sbjct: 288 VIVTKNPCMHPGDIRRLTAVDVPRLHHVRDCIVFPAKGER 327
>gi|402078468|gb|EJT73733.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1287
Score = 205 bits (521), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 152/465 (32%), Positives = 234/465 (50%), Gaps = 41/465 (8%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
L + R VTP+R+ GPE+ NRVLR D FLR+ F DE S DL
Sbjct: 440 LTNIFRAVVTPTRITLHGPEVETKNRVLRKHPGHQDYFLRVQFCDEG-----SRDLR--- 491
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG------L 370
T ++ R+Y R L +GI + R + FL FS S LR SS W A+ +
Sbjct: 492 -FETGVSVERVYQRFKDVLLSGIRLPGRIYNFLGFSHSSLRTSSVWFCAAFRDKETGKLV 550
Query: 371 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET--LSVHMD-EIEIIPDVKIEIGKTK 427
I E +G F IR AK AAR+GQ+FS + LS + D I+ +PD+ G+
Sbjct: 551 NHKSIIEGLGEFGHIRCPAKLAARIGQAFSETPSVVPLSGYSDILIKHVPDIYSADGRR- 609
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSM 486
FSDG+G VS E R + + +K N P+ FQIR+ G KG++A D T S K + RDSM
Sbjct: 610 -CFSDGVGSVSEEMMRIIWAHVPMKKNAPTCFQIRHAGCKGMLALDTTLSGKIIYFRDSM 668
Query: 487 RKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
+K++S + L++ SK P LNRQ+I +L +G + F K Q +++L A+ +
Sbjct: 669 KKFDSIDQEDLEICDTGSKAIPLVLNRQMIKILEDMGADHKWFLKLQSYRLKELQAVTAN 728
Query: 545 PLKAQEALELMSPGENTNILKELL---ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
Q L + G+ ++ K + + G +PFL +++ +L L+ K RI
Sbjct: 729 AYNVQTFLHTANVGQPISLGKFIYWAHLNGMDYKKDPFLRGVVEALVLQELRLLKHKARI 788
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
+ G+++ G +DET L GQV+V + ++ G S+S V+V
Sbjct: 789 PVSKGKTLFGLIDETGLLREGQVYVTFAS---EKIPGFQKPPRHSQS---------VIVT 836
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMV---DCVVFPQKGMRYILTML 703
++P LHPGD++++ + P H + + + F + G R + +ML
Sbjct: 837 RSPALHPGDIQIVTNIIPPPDHPLAAHRNSIFFSRHGSRDLPSML 881
>gi|429863873|gb|ELA38280.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1308
Score = 205 bits (521), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 170/558 (30%), Positives = 269/558 (48%), Gaps = 53/558 (9%)
Query: 171 YEILFKINLLVQNGCVA---GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 227
Y++L KI +L + A PL D L D R C+ ++ E
Sbjct: 352 YDLLLKIEILFRQARKAKRPDPLSDQALQSLRDGPR-----ECLPFPTHDIHPNVLDPDE 406
Query: 228 PSRWLTDQYRKYMTS---RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 284
++L + R+ RS P +S + +V + VTP+RV GPE+ NR+L
Sbjct: 407 ILKFLLEMERRIQAEGDYRSTLYGPDVS--NHHAWVFKAMVTPTRVTLHGPEMEPLNRIL 464
Query: 285 RHFRRDIDNFLRISFIDEDLDKIHSTDL--SPRGSSATDITRTRIYTRILSTLRNGILIG 342
R R D F+R+ F DED TDL +PR + ++ R + L GI +
Sbjct: 465 RKHRNHTDYFMRVQFCDED-----GTDLWFNPR------VNYEDVFERYKNVLNKGIQVA 513
Query: 343 DRKFEFLAFSSSQLRESSAWMFASRYGLTAA-----EIREWMGNFREIRNVAKYAARLGQ 397
R ++FL FS S LR +AW A + I + +G+F I+ AK AAR+GQ
Sbjct: 514 GRIYQFLGFSHSSLRSHAAWFMAPFVDDSGEMQLYRHIIKSLGDFEHIQIPAKCAARIGQ 573
Query: 398 SFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP 455
+FS + +S+ +I IPD+K IG VFSDG+G +S E + +
Sbjct: 574 TFSETPAFISLTDSDISAWNIPDIKSSIGGDDRVFSDGVGTISREALELIWPRLPRGSLI 633
Query: 456 PSAFQIRYGGYKGVVAADPTSSKKLSL--RDSMRKYESELTK-LDVLAW-SKYQPCFLNR 511
P+ QIR+GG KG+++ D ++ R+SM K+ S+ T+ L++ SK LNR
Sbjct: 634 PTCLQIRWGGVKGMLSLDTRLPGRVMCIRRESMEKFPSQDTENLEICGGASKPLKLVLNR 693
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT---NILKELL 568
Q+I +L LG+ ++ F + Q+ + +L A+ D L + G N + +K L
Sbjct: 694 QMIKILEDLGVRNDFFLRLQKTELDRLRAVTADAYNTGTFLHMQGIGLNCFLPSFIKSLD 753
Query: 569 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 628
G + FL ++Q +L L+ K RI +P G ++ G +DET L G+V+ I
Sbjct: 754 KYGIDYRRDDFLRTVVQNVVLQELRLLKHKARIPVPKGVTVFGVMDETGFLREGEVY--I 811
Query: 629 SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HM 685
+ YR+ G +S+ S R G V+V ++P LHPGD++++K PA H ++
Sbjct: 812 AYDTYRR-PGRTSIDGSLRD-------GPVLVTRSPALHPGDIQLVKMRTPPAGHPLRNL 863
Query: 686 VDCVVFPQKGMRYILTML 703
+C+ F Q G R + + L
Sbjct: 864 RNCIAFSQFGRRDLPSQL 881
>gi|328848635|gb|EGF97840.1| hypothetical protein MELLADRAFT_114044 [Melampsora larici-populina
98AG31]
Length = 1135
Score = 205 bits (521), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 153/469 (32%), Positives = 248/469 (52%), Gaps = 66/469 (14%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 322
V +TPSR GP SN VLR +R D NFLRIS +E+ L+ R DI
Sbjct: 446 VTITPSRFILEGPVTEQSNSVLRMYR-DTHNFLRISIREEN-------GLTLRPDRDVDI 497
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREW 378
R + TR L L G+ + RKFEFL +SSS LRE AW Y +TAA IR+
Sbjct: 498 LRL-LKTRYLDFLTQGLNLCGRKFEFLGYSSSALREHQAWFVCPFYKGDSLVTAASIRQR 556
Query: 379 MGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 437
+G+F ++ N+ A+Y AR+ Q+F+S++++L++ +I I DV+ + F+DG+G +
Sbjct: 557 LGDFSKVINIPARYMARVAQAFTSTRQSLTLLPSQIVRIEDVE----RNGSCFTDGVGTI 612
Query: 438 SAEFARKVAS--KCGLKDN------PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRK 488
S + AR+V GL S FQIR GG+KG+++ DPT + + +R SM K
Sbjct: 613 SPDLARQVDEVLSAGLPSRKRRHHAKSSCFQIRLGGFKGMLSVDPTLKQACVCVRPSMDK 672
Query: 489 YES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
+ S + LD+ ++++ P +LNR +I +L LGI +++F QRE V +++ T+
Sbjct: 673 FVSPDSLTLDIAGSFTRPLPAYLNRPMIKVLEDLGIHEQVFLALQREIVSKVEHSRTNLR 732
Query: 547 KAQEALELMSPGENT---NILKEL-LICGYKPDA------EPFLSMMLQTFRASKLLELR 596
+A E ++ +S + +IL++L + G + + E + M++Q FR +L+
Sbjct: 733 RASELMDQLSMARTSGMPSILRQLGTLMGDEGNTQSDFIEECYDLMIMQCFR-----DLK 787
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
+ RI + +++G DE + L V+ I G + F ++G
Sbjct: 788 YRARIPLDASYTLVGVADEDQVLPPNFVYACIQYPG----------------KAPFYLEG 831
Query: 657 LVVVAKNPCLHPGDVRVLKAVN------VPALHHMVDCVVFPQKGMRYI 699
+ ++++PCLHPGDVRV+ + P L+ + +CVVF GMR +
Sbjct: 832 PITISRSPCLHPGDVRVVTGIGKLDLERAPRLNALRNCVVFSVAGMRSL 880
>gi|17508365|ref|NP_493057.1| Protein RRF-2 [Caenorhabditis elegans]
gi|13655331|emb|CAC35914.1| Protein RRF-2 [Caenorhabditis elegans]
Length = 1579
Score = 204 bits (520), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 156/496 (31%), Positives = 244/496 (49%), Gaps = 71/496 (14%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
+++G V +V TP+RV + PE+ + NRVLR+F RD + LR++F D++ K+ +
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRA--- 499
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA------- 365
+ T + + L +GI++ +R F FL SSSQ+R++ A+
Sbjct: 500 --------NATGELLDICVKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRH 551
Query: 366 -------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET-LSVHMDEIEIIP 417
S++ +R +GNF +I N+ K ARLGQ F+ S+ T +S+ D +
Sbjct: 552 KNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSRLTGVSLGPDNYCLTH 611
Query: 418 DVK--IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 475
D+ ++Y FSDG+G +S EFA++V+ + PS FQ RY G KGV+A DP
Sbjct: 612 DLSGGRSSNGSEYTFSDGVGMMSYEFAQEVSRLMSFGRSVPSCFQFRYRGMKGVLAIDPL 671
Query: 476 SSK----------------KLSLRDSMRKYESELTKLDVLAWSKYQP---CFLNRQLISL 516
K K R S K+E + D + KY LN+ LI++
Sbjct: 672 LDKERNWQEKHGISLSKNIKCVFRPSQIKFEGKQILGDQVEMVKYSSPVLVALNKPLINI 731
Query: 517 LSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGENTNILKEL------ 567
L D++ E + E R++ + + + + Q A ++ N LKE
Sbjct: 732 L------DQVSEMQSLECHRRITSRIEELMDLQTLSFAKQMTDEACFRNKLKEFPRRIDI 785
Query: 568 ----LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNY 621
I G+ EPF +++ + + K +I IP+ GRSM+G +DET L Y
Sbjct: 786 DYLRTIWGFTLSNEPFFRSLVKASIKFAITKQLFKEQIQIPSELGRSMLGVVDETGILQY 845
Query: 622 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
GQVFVQ + +R + S+ + IV G V++ KNP + PGDVR+ +AV++P
Sbjct: 846 GQVFVQYT-KNHRNILPPRD--SNRKVLGSEIVTGTVLLTKNPGIVPGDVRIFEAVDIPE 902
Query: 682 LHHMVDCVVFPQKGMR 697
LHH+ D VVFPQ G R
Sbjct: 903 LHHLCDVVVFPQHGPR 918
>gi|345563096|gb|EGX46100.1| hypothetical protein AOL_s00110g264 [Arthrobotrys oligospora ATCC
24927]
Length = 1279
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 154/506 (30%), Positives = 251/506 (49%), Gaps = 56/506 (11%)
Query: 227 EPSRWLTDQYRK----YMTSRSKPSSPAISLD----DGLVYVHRVQVTPSRVYFCGPEIN 278
+P WL++ +K + ++ K + + + V +HR+ +TP+ ++ GP +
Sbjct: 422 DPQIWLSENIQKDFLEALETKQKSQEYMVRMKFYRKENQVLIHRMSITPTGMFPGGPNLE 481
Query: 279 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATD---ITRTRIYTRILSTL 335
NRVLR + +++FLR+S ++ED DL R S D I R + L
Sbjct: 482 PKNRVLREYHDYLNHFLRVSLVEED-----GGDL--RFESGVDGKYIYDGR-FLPFLMPE 533
Query: 336 RNGILIGDRKFEFLAFSSSQLRESSAWMFAS----RYGLTAAEIREWMGNFREIRNVAKY 391
N + I R F+FL FS S LR +AW A+ R +T + E +G+F+ I+ K
Sbjct: 534 SNLLKIAGRTFKFLGFSQSSLRSHTAWFMATISTPRRTITVDGVIERLGDFKSIKIPGKC 593
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPD---VKIEIGKTKYVFSDGIGKVSAEFARKVASK 448
AAR+GQ+F+ + ++ +D+ I +KI G KY FSDG G VS + K
Sbjct: 594 AARIGQAFTDT--VANIKIDDFMIAQKRDIIKIAPGGKKYTFSDGCGTVSKPLIELIWKK 651
Query: 449 CGLKDNP-PSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDVL--AWSKY 504
+P P+ FQIR+ G KGVVA D T L L DSM K++ K+ + +++K
Sbjct: 652 GEFTSDPKPTVFQIRFRGAKGVVALDSTQRDPILCLYDSMVKFDGLKNKVFEICRSFTKP 711
Query: 505 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI- 563
P +LNR +I +L G+ + F Q A+ L P A L+ + NI
Sbjct: 712 LPFYLNRCIIKILEDRGVPIKNFMDLQGRALATLRERTFTPDSAAHFLDYQNRCTQANIP 771
Query: 564 --LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 621
++EL G+ + FL +++ + L +++ + RI + G +++G LDET L
Sbjct: 772 FLIRELFALGWDYKEDNFLRKVVEFTMLTTLRDMKYRARIQVDKGFTLVGVLDETGYLQE 831
Query: 622 GQVFVQIS-GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 680
G+++ I G R+ H +G+V + +NP LHPGD++++ AV VP
Sbjct: 832 GEIYCPIQREGGKREAH-----------------RGVVAICRNPALHPGDIQIVTAVEVP 874
Query: 681 ---ALHHMVDCVVFPQKGMRYILTML 703
L +++CVVF Q+G R + +ML
Sbjct: 875 YDSPLRDLMNCVVFSQRGQRDLPSML 900
>gi|302907308|ref|XP_003049617.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
gi|256730553|gb|EEU43904.1| hypothetical protein NECHADRAFT_123067 [Nectria haematococca mpVI
77-13-4]
Length = 1261
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 154/469 (32%), Positives = 238/469 (50%), Gaps = 39/469 (8%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
L D V+V + VTP+RV GP+ NRVLR F + D+FLR+ F DED + +
Sbjct: 421 LPDHQVWVFKALVTPTRVLLHGPDAESKNRVLRMFPDNNDSFLRVIFCDEDGQDL---NF 477
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY---- 368
+PR I ++R + +GI I RK+ FL FS S LR SAW FAS +
Sbjct: 478 NPR------IDNEDTFSRYRKVMDDGIDIAGRKYTFLGFSHSSLRSHSAW-FASPFVDGN 530
Query: 369 --GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIG 424
T + I E +G+F++IR AK AAR+GQ+FS + + + + I IPD+K G
Sbjct: 531 YQSQTISVILEALGDFQDIRVPAKCAARIGQAFSETPYAVPLFENSITTRHIPDIKTADG 590
Query: 425 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLR 483
VFSDG+G +S + V ++ P+ QIR+GG KG+++ D K +R
Sbjct: 591 SR--VFSDGVGTISQDALEDVWMYLPMRSAAPTCLQIRWGGCKGMLSLDTRLEGKTFCIR 648
Query: 484 -DSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
+SM K+ S +LT+L + SK LNRQ+I +L +G ++ F Q +A+ L
Sbjct: 649 KESMMKFPSNDLTELGICDTSSKPLRLVLNRQMIKILEDMGTQNDWFFDLQNKALNVLRG 708
Query: 541 ILTDPLKAQEALELMSPGENTN---ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRT 597
+ LE + G N ++K+L G + FL ++ +L L+
Sbjct: 709 VTASAHNTSTFLEYQTIGVNMGLPKLVKQLDRMGIDYRRDKFLRSAVEHVVLRELRLLKH 768
Query: 598 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 657
K RI + G ++ G +DET L QV+V Y + +G + R + G+
Sbjct: 769 KARIPVEKGVTLFGVMDETGFLKERQVYVT-----YDKTYG----VKNGRRINATLEDGI 819
Query: 658 VVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
++V ++P LHPGD++V + V P H ++ +C+VF QKG R + + L
Sbjct: 820 ILVTRSPALHPGDIQVAEMVTPPKGHPLRNLQNCIVFSQKGDRDLPSQL 868
>gi|170582151|ref|XP_001896001.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158596891|gb|EDP35156.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1475
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 151/486 (31%), Positives = 239/486 (49%), Gaps = 63/486 (12%)
Query: 252 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 311
S D+G V + +TP+R+ PE+ + NRVLR F D+ LRI F D+D +
Sbjct: 462 SADEGFQRVRKAVITPTRMLLVIPELLMGNRVLREFDESGDDALRIQFRDDDGAHLR--- 518
Query: 312 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLT 371
R + I T ++ +L G+ I DR F +LA S+SQ+R++ + F
Sbjct: 519 ---RSRAGLYIIETTVHNSLL----RGVYISDRHFVYLASSNSQMRDNGCYFFNDGDDGK 571
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKET-LSVHMDEIEIIPDV---KIEIGKTK 427
IR+ +G F N+ K +R+GQ F+ SKET +++ + DV K G+
Sbjct: 572 VKMIRDKLGKFDHT-NIPKLMSRMGQCFTQSKETDVTLKRRKYNKTHDVIGGKDSCGEP- 629
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK-------- 479
++FSDG+GK+S +FA ++A+ GL PS FQ RY G KGV++ DP ++
Sbjct: 630 FIFSDGVGKLSEDFAEQIANDLGLAKCVPSCFQFRYRGLKGVLSVDPALRQRRLWAERNG 689
Query: 480 ---------------LSLRDSMRKYESELTKL-DVLAWSKYQPCFLNRQLISLLSTLG-- 521
+ R S K+ + ++ +++ +S +LNR LI++L +
Sbjct: 690 LEDKHAKTAKVNDLDIIFRPSQDKFHAPRKEIIEIVKYSSPTSVYLNRPLINILDQVSDM 749
Query: 522 --------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYK 573
I + I R+ ++ DA++++ + +E L N L + G+
Sbjct: 750 QGFDVHSRIVNRIHGLLDRQLLKLSDALMSED-RCRERLAEFPRRINVQYLS--VARGFT 806
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGA 631
EPF +L L + +K I IP GR+M G LDET L YGQVFVQ +
Sbjct: 807 LTQEPFFHGLLIASVRFTLQKQLSKEHIQIPANLGRTMFGILDETGLLQYGQVFVQFTND 866
Query: 632 GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 691
+ L + ++ + IV+G V++ KNP + GDVR+ +AV++P L H+VD VVF
Sbjct: 867 VF--------LKTPPKAAAKTIVKGFVLITKNPSIVAGDVRIFEAVDLPELRHLVDVVVF 918
Query: 692 PQKGMR 697
PQ G R
Sbjct: 919 PQHGPR 924
>gi|452977804|gb|EME77568.1| hypothetical protein MYCFIDRAFT_60792 [Pseudocercospora fijiensis
CIRAD86]
Length = 1015
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 146/475 (30%), Positives = 244/475 (51%), Gaps = 49/475 (10%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
+H+V VTP+ + GPE +NRVLR + +ID+F+R+ F DE + PR
Sbjct: 210 IHKVIVTPAGIRLEGPEPEPTNRVLRKYAENIDDFVRVVFQDEHGGPVR---YDPR---- 262
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAE 374
TD+ R + R + L I+I R F FL FS S LR S W F +R G + A +
Sbjct: 263 TDLARI-YHERFRNVLDTSIVICGRGFSFLGFSHSSLRSQSCWFMAPFVNRNGRLIFAEK 321
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 434
+ + +G+F IR AK AAR+GQ+F+ + T+ + D++ D+++ I + FSDG+
Sbjct: 322 VLKGLGDFSSIRTPAKCAARIGQNFTDTNATVHLEPDQVF---DLQV-IERNGRDFSDGV 377
Query: 435 GKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE 492
G +S R+V + G K P+ QIR+ G KG+V+ DP K L LR +MRKY++E
Sbjct: 378 GTISEALLREVWRRYGTKKMLKPTVLQIRFQGAKGMVSLDPRLPGKALMLRANMRKYDTE 437
Query: 493 LTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREA---VRQLDAILTDPLK 547
+ + + + ++P LN+Q I + LGI +F QR A +RQ+ A+ + K
Sbjct: 438 TSWVLEICGAGFKPLPMVLNQQFIKIFEDLGIPMSVFLDLQRSAMKHLRQMTALSVNSAK 497
Query: 548 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 607
E + ++++L G+ + FL +++ ++L +++ + RI + G
Sbjct: 498 LLEDSGIARATGMPRLIRDLAQIGFDYHEDHFLYSIVEMAVVTQLRDIKYRARIPVEAGV 557
Query: 608 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 667
++ G +DET L GQ+FV A H +++ VV+ ++P +H
Sbjct: 558 TLYGIMDETGYLKEGQIFVITEKAPEGGKH--------------ILIKDKVVITRSPAMH 603
Query: 668 PGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTMLKP--------RLLWYE 711
PGD++V+ AV+VP L + + VVF + G R + + L ++W+E
Sbjct: 604 PGDIQVVDAVDVPPNSLLRRLSNVVVFSKWGDRDLPSKLSGGDLDGDIYNIIWHE 658
>gi|347830482|emb|CCD46179.1| similar to rna-dependent rna polymerase [Botryotinia fuckeliana]
Length = 1203
Score = 203 bits (516), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 149/463 (32%), Positives = 234/463 (50%), Gaps = 51/463 (11%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
+HRV +TP+ Y GPE +NR+LR + + NF+R++F DED D++ A
Sbjct: 421 IHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDEDGDRLQ---------YA 471
Query: 320 TDITRTRIYTRIL-STLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTAAE 374
++ + IY + L++G IG +K+E+L S S LR S W A + A
Sbjct: 472 SNASNDEIYDGVFRKVLQDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQNDIYYDALH 531
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 434
I + +G F +IR+ AK AAR+GQ+FS + TL+ +DE + V +I + VFSDG+
Sbjct: 532 ITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLT--LDETVTVETVA-DIERNGRVFSDGV 588
Query: 435 GKVSAEFARKVASKCGLKDN---PPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYE 490
G +S + K+ + L D P+ FQIRY G KG+++ D KL LR+SM K+E
Sbjct: 589 GTMSEKLMEKIWDR--LPDKYLVKPTCFQIRYRGAKGMISLDSRLPGVKLRLRESMIKFE 646
Query: 491 SELTKLDVLAWSKYQ--PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 548
+ + Y+ P +LNRQ I +L LG+ E F + Q + V +L I A
Sbjct: 647 GSTSNDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITASAYNA 706
Query: 549 QEALELMSPGENTNILKELLICG-----YKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
L+ G+ + + + C ++ D FL +L+ +L L+ K RI +
Sbjct: 707 STFLQSKRVGDVVLLPQLIEHCSALDLDFRNDL--FLRDILEMTVLIELRTLKHKARIPV 764
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
G + G +DET L G+++ G R ++L S+ VV+ +
Sbjct: 765 ERGYHLHGIMDETGILEEGEIYCCWIEDGKR-----TTLVGSN-----------VVITRA 808
Query: 664 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
P LHPGD+++ AVNVP+ L+ + +CV F QKG R + + L
Sbjct: 809 PALHPGDIQLANAVNVPSDSPLNRLYNCVCFSQKGARDLPSQL 851
>gi|336467963|gb|EGO56126.1| hypothetical protein NEUTE1DRAFT_64449 [Neurospora tetrasperma FGSC
2508]
gi|350289794|gb|EGZ71019.1| RdRP-domain-containing protein [Neurospora tetrasperma FGSC 2509]
Length = 1350
Score = 202 bits (514), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 233/464 (50%), Gaps = 44/464 (9%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
GL ++R VTP+R+ GPE+ NR+LR F D+FLR+ F +ED DL
Sbjct: 408 GLTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFGEED-----GQDLFFN 462
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-----SRYGL 370
+ + D IY R L NGI +G R + FL FS S LR S W+ A R L
Sbjct: 463 SAVSMDA----IYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIYNGRLQL 518
Query: 371 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
A I E +G+F I++ A+ AAR+GQ+FS + ++S+ I++I + +I + + VF
Sbjct: 519 -ANNIIEGLGDFGNIKSPARRAARIGQAFSETPYSVSLDTHGIDVI--RQRDIKRNERVF 575
Query: 431 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY 489
SDG+G +S + + P+ Q+R+ G KG++A D +++ +RDSM K+
Sbjct: 576 SDGVGIISQGALEVIHREIPESKGYPNCLQVRWAGAKGMLALDARLPGRQICIRDSMEKF 635
Query: 490 ----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
E L D+ SK P LNRQ+I +L +G + F K Q + +++L AI +
Sbjct: 636 RSRDEEHLEICDMA--SKPIPLMLNRQMIKILEDMGAPAKWFMKLQEKELQRLRAITDNV 693
Query: 546 LKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
L+L G++ ++ LK+L + FL +++ +L L+ K RI
Sbjct: 694 QNVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRLLKHKARIP 753
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
+P G ++ G +DET L G+V+V R G + G VVV +
Sbjct: 754 VPYGVTLFGVMDETGLLREGEVYVTFETVDGR-FKGPPT-------------AGPVVVTR 799
Query: 663 NPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
+P LHPGD+++ V PA H + +C+VF Q G R + + L
Sbjct: 800 SPALHPGDIQIAYNVIPPAGHPLRELKNCIVFSQNGERDLPSQL 843
>gi|268561564|ref|XP_002646475.1| Hypothetical protein CBG19448 [Caenorhabditis briggsae]
Length = 1606
Score = 202 bits (514), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 157/505 (31%), Positives = 247/505 (48%), Gaps = 86/505 (17%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
G V +V TP+RV + PE + NRVLR F +D +RI+F D++ +++ + D
Sbjct: 462 GFQRVRKVIFTPTRVIYISPETIMGNRVLRKFDKDGTRVIRITFRDDNNNQMRANDTG-- 519
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA--- 372
++T + L GI I +R+F FL S+SQ+R++ A+ F ++Y +
Sbjct: 520 --DLLEMTANKF-------LGEGIRIANREFGFLGCSNSQMRDNGAY-FMAKYSQSQLEK 569
Query: 373 ------------------AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIE 414
E+R+ +G F ++ N+ K AR+GQ F+ S+ T V ++ +
Sbjct: 570 FLRTRPNEAQLKAFKPRIMEVRKHLGKFDKLENIPKLMARMGQCFTQSRLT-GVELNRSD 628
Query: 415 IIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 470
I E GK Y FSDG+G +S FA+KVA + ++ PS+FQIR+ G KG++
Sbjct: 629 YIRIPDFEGGKNLAGKPYTFSDGVGIMSYRFAQKVAHAMQMGNSVPSSFQIRFRGMKGMI 688
Query: 471 AADP-------------------TSSKKLSLRDSMRKYESELTKLDVLAWSKYQP---CF 508
A DP K + R S K+E++ D + KY
Sbjct: 689 AIDPYMDLIHQWNVSYDIPYQVPNLELKCAFRPSQIKFEAKSLPGDQIEMVKYSAPVMVA 748
Query: 509 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGENTNILK 565
LN+ I++L D++ E + E +++ + + + Q A ++ N LK
Sbjct: 749 LNKPFINIL------DQVSEMQSLECHKRVTGRVEELMDRQILSFARQMNDETYCRNRLK 802
Query: 566 ELL----------ICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGC 612
E + G+ +EPF S++ + + S +LR K +I IP GRSM+G
Sbjct: 803 EFPRRIDIDFLRPMWGFTLSSEPFFRSLIKASIKFSITKQLR-KEQIQIPKELGRSMLGV 861
Query: 613 LDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 672
+DET L YGQ+FVQ + ++L + ++ IV G V+V KNPC+ GDVR
Sbjct: 862 VDETGQLQYGQIFVQYTQNAAKKLPMRGPNMTVPDAK---IVTGTVLVTKNPCIVTGDVR 918
Query: 673 VLKAVNVPALHHMVDCVVFPQKGMR 697
V +AV++P LHHM D VVFPQ G R
Sbjct: 919 VFEAVDIPELHHMCDVVVFPQHGPR 943
>gi|324500457|gb|ADY40216.1| RNA-dependent RNA polymerase RRF-3 [Ascaris suum]
gi|333440982|gb|AEF32766.1| RdRP3 [Ascaris suum]
Length = 1640
Score = 202 bits (514), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 150/480 (31%), Positives = 250/480 (52%), Gaps = 67/480 (13%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
V + +V TP R+ PE+ ++NRV+RHF + LR F D++ ++ D + RG
Sbjct: 563 VLIRKVMATPLRLILMPPEVMMTNRVVRHFGEEYA--LRCVFRDDNGQRLVVNDFT-RGR 619
Query: 318 SATDITRTRIYTRIL-STLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAA--- 373
+ + ++ I R++ TL GI I R ++FLA+S+SQ+R+ +M+++ +
Sbjct: 620 AVQE--QSLIIQRLVYKTLSEGIHIASRHYKFLAWSNSQMRDHGCYMYSATKVIDDVSGK 677
Query: 374 -------EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV-----KI 421
+IR WMG+F +NV K +R+GQ F+ ++ T+ + + + D+
Sbjct: 678 ERIYEIEDIRRWMGDFTASKNVPKLMSRMGQCFTQAQPTIVLERKDWRMEEDIVGGLPHP 737
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT----SS 477
E G+ + FSDG G++SA++A VA+K L+ PPS FQ+R+ G+KGV+ DP+ +
Sbjct: 738 ETGEL-FNFSDGAGRISAKYASLVAAKLDLRP-PPSCFQVRFKGFKGVLCVDPSLDLENK 795
Query: 478 KKLSLRDSMRKYE---SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREA 534
+ + R S +K+E SE +L+V+ S L+R LI +L D++ E++ RE
Sbjct: 796 ENVVFRRSQKKFEEDESEAAELEVVKHSMPSFVCLSRPLIMIL------DQVSERQNREL 849
Query: 535 ------------VRQLDAILTDPLKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLS 581
++L+ + L + A E +S + +I ++L G+ EPF
Sbjct: 850 HQRLCWRIHCLLEKELNTLAEMLLDEEVAAEALSSRLSLSIDFRQLHDSGFTFTNEPFFR 909
Query: 582 MMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE 639
+L + + +K +IF+P GR+M G +D+T L YGQVFVQ S
Sbjct: 910 SLLVAVHHYNIKQHLSKLKIFLPGSMGRTMYGVIDDTGVLQYGQVFVQYS---------- 959
Query: 640 SSLFSSSRSRQRFIVQ--GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
S R+ + ++ G V+V KNPCL GDVR+ AV +L H+ D +VFP+ G R
Sbjct: 960 ----PSVRTPSKKVITHVGPVLVTKNPCLVGGDVRMFTAVYQSSLSHLRDVIVFPRYGPR 1015
>gi|308510538|ref|XP_003117452.1| CRE-RRF-3 protein [Caenorhabditis remanei]
gi|308242366|gb|EFO86318.1| CRE-RRF-3 protein [Caenorhabditis remanei]
Length = 1779
Score = 202 bits (513), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 155/507 (30%), Positives = 248/507 (48%), Gaps = 64/507 (12%)
Query: 235 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
QY + ++ S + A L V V +V V+PSRV PE+ + NR++R F D
Sbjct: 652 QYERLLSGESLQDVGLAKPLPKNCVSVAKVIVSPSRVLLMAPEVMMVNRIVRRFGPDYA- 710
Query: 294 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
LR F D++L ++ D S + D + I +TL++GI I DR + FL +S+
Sbjct: 711 -LRCVFRDDNLGRLAIRDFS---VNNIDHMSNVVTEAIYNTLKSGIKIADRVYSFLGWSN 766
Query: 354 SQLRESSAWMFASRYGL-------TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 406
SQ+R+ +++A R T +IR WMG+FR+ +V K +R+GQ F+ ++ T+
Sbjct: 767 SQMRDQGCYLYAPRVDPITGAVTGTVEDIRIWMGDFRDAVSVPKMMSRMGQCFTQAQPTV 826
Query: 407 -------------SVHMDEIEIIPDVKIEIG-KTKYVFSDGIGKVSAEFARKVASKCGLK 452
V + I + +E G K+ FSDG G++S + A ++ LK
Sbjct: 827 RVSPILFQLNFLFQVKLQRHHWIVEPDMEGGPDNKFCFSDGCGRISYKLAGHISKILDLK 886
Query: 453 DNPPSAFQIRYGGYKGVVAADPT-----SSKKLSLRDSMRKY-----ESELTKLDVLAWS 502
P+ FQ+R+ G+KG++ DPT + K+ R S +K+ + + L+V+ ++
Sbjct: 887 -AIPACFQVRFKGFKGILVIDPTIDDIMNMPKVIFRKSQQKFGEGGGDLQDEYLEVVKYA 945
Query: 503 KYQPCFLNRQLISLLSTLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
P LNR I++L + I + +RE + +L + A+E +
Sbjct: 946 MPSPVCLNRPFITILDQVSAKQSTASHRRITKRVHYYLERELCSLSNMLLNENQAAEELV 1005
Query: 553 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMM 610
+ + N+ + G++ +P + ML ++ +K +IF+P GRSM
Sbjct: 1006 NRTNLPIDWNLASKR--AGFQLSTDPLVRSMLFAIYRYNIIHHISKAKIFLPPNLGRSMY 1063
Query: 611 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 670
G +DET L YGQVF+Q S RQ S + G V++ KNPC PGD
Sbjct: 1064 GVVDETGLLQYGQVFIQYSPT-IRQT-----------SDTPILKTGKVLITKNPCHVPGD 1111
Query: 671 VRVLKAVNVPALHHMVDCVVFPQKGMR 697
VRV +AV PAL H+VD VVFP+ G R
Sbjct: 1112 VRVFEAVWQPALAHLVDVVVFPRHGPR 1138
>gi|350629963|gb|EHA18336.1| hypothetical protein ASPNIDRAFT_176277 [Aspergillus niger ATCC
1015]
Length = 1152
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 154/560 (27%), Positives = 264/560 (47%), Gaps = 47/560 (8%)
Query: 168 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPY-------RAPVSISCIEHALDKLY- 219
+LP+ ILF++ L N + + S L+ Y R P+S+ ++ D +
Sbjct: 293 SLPFGILFQLQALAYNAYLLPRTVQSLAQELIQAYKEDGAAHRRPISVLAMKKLFDMIDW 352
Query: 220 ---HLKECCYEPSRWLTDQYR--KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCG 274
H +E + R K S + D L +H+V +TP+RV G
Sbjct: 353 PSPHGNPTDFEVGALMMALKRNQKDALQDLAASGDMLGPSDNLTPIHKVMITPTRVTLHG 412
Query: 275 PEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILST 334
PE+ NR+LR F D F+R+ F DE+ +H + I +++R
Sbjct: 413 PELEPRNRILRRFPNHHDYFIRVQFCDENGQDLHFN---------SRIHYDDVFSRFKHV 463
Query: 335 LRNGILIGDRKFEFLAFSSSQLRE---SSAWMFASRYGLTAAEIREWMGNFREIRNVAKY 391
L +GI I R + FL +S S LR SS ++ S T I + +G+F +I++ A+
Sbjct: 464 LTHGIQIAGRTYSFLGWSHSSLRSHAFSSPFVDESGQFQTHFSIIKALGDFSKIQSPARC 523
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 451
AAR+GQ+F+ + +S+ +IE+ + K VFSDGIG +S A+ +
Sbjct: 524 AARIGQAFTDTPYAISLSEYDIEVSEMADVTSKDGKRVFSDGIGTLSWNVAKSIWHHIPE 583
Query: 452 KDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAW-SKYQPCFL 509
K P+ FQ+R GG KG++A D S ++ +R SM K+E ++ L++ A +K L
Sbjct: 584 KKGFPTCFQVRLGGAKGMLAVDGRLSGSQVKVRPSMIKFEGDMKDLEICAMAAKPMVLVL 643
Query: 510 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLI 569
NRQ+I +L +G D+ F Q A+ +L ++ ++ ++ + G+ + +
Sbjct: 644 NRQMIKILEDMGTPDDWFLTLQEAALTKLRSVTASAHNSEVFIKRQAVGDTIGLYRLFRH 703
Query: 570 CGYKP---DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 626
C + EPF+ +++ +L L+ K RI + G ++ G +DET L QV+V
Sbjct: 704 CHQRDLDYRKEPFIRSVVEAVVLKELRLLKHKARIPVFKGITLFGVMDETGLLEADQVYV 763
Query: 627 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH--- 683
Y + G + ++ G+V+V ++P LH GD++ + V P H
Sbjct: 764 T-----YETIEGRHAPPPNA---------GMVLVTRSPALHDGDIQFAQNVIPPDNHPLA 809
Query: 684 HMVDCVVFPQKGMRYILTML 703
+ +C+VF KG R + + L
Sbjct: 810 ELTNCIVFSSKGYRDLPSQL 829
>gi|154290300|ref|XP_001545747.1| hypothetical protein BC1G_15659 [Botryotinia fuckeliana B05.10]
Length = 1080
Score = 201 bits (512), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 148/463 (31%), Positives = 234/463 (50%), Gaps = 51/463 (11%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
+HRV +TP+ Y GPE +NR+LR + + NF+R++F DED D++ A
Sbjct: 288 IHRVTITPAGFYLDGPEPESNNRILRKYAGNHSNFVRVTFCDEDGDRLQ---------YA 338
Query: 320 TDITRTRIYTRIL-STLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTAAE 374
++ + IY + L++G IG +K+E+L S S LR S W A + A
Sbjct: 339 SNASNDEIYDGVFRKVLQDGFSIGKQKYEYLGSSHSSLRTQSCWFVAPFTQNDIYYDALH 398
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 434
I + +G F +IR+ AK AAR+GQ+FS + TL+ +DE + V +I + VFSDG+
Sbjct: 399 ITQDLGRFGDIRSPAKCAARIGQAFSDTPNTLT--LDETVTVETVA-DIERNGRVFSDGV 455
Query: 435 GKVSAEFARKVASKCGLKDN---PPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYE 490
G +S + K+ + L D P+ FQIRY G KG+++ D +L LR+SM K+E
Sbjct: 456 GTMSEKLMEKIWDR--LPDKYLVKPTCFQIRYRGAKGMISLDSRLPGVQLRLRESMIKFE 513
Query: 491 SELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 548
+ + Y+P +LNRQ I +L LG+ E F + Q + V +L I A
Sbjct: 514 GSTSNDLEICGGAYKPLPMYLNRQFIKILEDLGVEPEYFMRLQAKEVSRLREITASAYNA 573
Query: 549 QEALELMSPGENTNILKELLICG-----YKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
L+ G+ + + + C ++ D FL +L+ +L L+ K RI +
Sbjct: 574 STFLQSKRVGDVVLLPQLIEHCSALDLDFRNDL--FLRDILEMTVLIELRTLKHKARIPV 631
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
G + G +DET L G+++ G R ++L S+ VV+ +
Sbjct: 632 ERGYHLHGIMDETGILEEGEIYCCWIEDGKR-----TTLVGSN-----------VVITRA 675
Query: 664 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
P LHPGD+++ AVNVP+ L+ + +CV F QKG R + + L
Sbjct: 676 PALHPGDIQLANAVNVPSDSPLNRLYNCVCFSQKGARDLPSQL 718
>gi|327295881|ref|XP_003232635.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
gi|326464946|gb|EGD90399.1| hypothetical protein TERG_06627 [Trichophyton rubrum CBS 118892]
Length = 1207
Score = 201 bits (511), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 146/466 (31%), Positives = 240/466 (51%), Gaps = 51/466 (10%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH---STDLSP 314
V VHR VTP+ +Y GP NR+LR + +ID F+R+ F+DE D + +L P
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVFFDPHANLEP 475
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG-- 369
+ R ++ GI I R FEFL FS S LR + W F + G
Sbjct: 476 -----------IFHQRFAGVMKRGIEIAGRGFEFLGFSHSSLRAQTCWFAAPFTTADGDY 524
Query: 370 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKY 428
L A I +G F IR+ +K AAR+GQ+FS + ++SV + + + PDVK +
Sbjct: 525 LNARTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVK----RNDR 580
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSM 486
+FSDG+G +S + ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM
Sbjct: 581 IFSDGVGVMSRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESM 640
Query: 487 RKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
K+ + +L +++ A + P +LN Q+I +L LG+ E F + Q++ + L +
Sbjct: 641 VKFPTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQLQQDEINFLYSTFNS 700
Query: 545 PLKAQEALELMSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
+A + LE SP + L L + G + +PFL +++ +L +L+ + R
Sbjct: 701 TERAAKFLE-DSPVPRSLRLPWLFLVLKGLGIRYTRDPFLKRVMELTTLLRLRDLKYRAR 759
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
I +PN ++ G +DET L +++ ++ R+ +V+ VV+
Sbjct: 760 IRVPNAVTLYGIMDETGYLKENEIYC---------------VYLGENGRREILVRDNVVI 804
Query: 661 AKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
++P LHPGD++V+ AV+VPA L + +CV F Q G R + +ML
Sbjct: 805 TRSPALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSML 850
>gi|353235419|emb|CCA67432.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1186
Score = 201 bits (510), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 166/566 (29%), Positives = 280/566 (49%), Gaps = 73/566 (12%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE- 227
LP+++ F++ L+ C P R + + S + L +E E
Sbjct: 310 LPFKVAFQVQGLLSR-CAFNPQEILEILRDIHAALTELGRSATAECVKALEQEREGNPEA 368
Query: 228 -PSRWLTDQYRKYMTSRSKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLR 285
P+ D + + TS + A+S ++ G+ HR +TPS + GP + +NRV+R
Sbjct: 369 TPAALFADVVQSFRTSNN---VKAMSDEEPGVFECHRATITPSSIILTGPLPDETNRVIR 425
Query: 286 HFRRDIDNFLRISFIDED---LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIG 342
+R+ F+RI F +ED L K + DL G+ D RI ++NG+L+
Sbjct: 426 KYRKYAHKFIRIDFTEEDGLHLRKEKNVDL---GAILDD--------RIGEFMKNGLLVA 474
Query: 343 DRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFRE-IRNVAKYAARLG 396
R+FEFLA+SSS L+E + W F + G +T+ IR +G+F + I ++Y ARL
Sbjct: 475 GRRFEFLAYSSSALKEHAVWFMTPFTTSDGQYVTSESIRRSLGDFSKVIYCPSRYGARLS 534
Query: 397 QSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASK-------- 448
Q+FSS++ ++++ ++EI IPD + + G +++DG+G +S + A ++ +K
Sbjct: 535 QAFSSTEPSITIKVNEIRFIPDKESDQGS---LYTDGVGTMSPQVAEEIWAKYTEPRSKR 591
Query: 449 CGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVL-AWSKYQP 506
+ PSAFQIR GG KG++ D + + +RDSM K+ S ++++ A+ +
Sbjct: 592 SRRRLKTPSAFQIRLGGLKGMLCVDSRLQGRVVCVRDSMNKFHSNDREVEIARAFDRPMT 651
Query: 507 CFLNRQLISLLSTL-GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TN 562
FLNR LI LL TL + E F Q +AV + + A LE G T+
Sbjct: 652 MFLNRPLIMLLETLKKVPLEPFMALQTKAVEETRDAMKSFDTAARLLEQYGLGTAFRLTS 711
Query: 563 ILKEL----LICGYKPDAE---PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 615
+ +L + K ++ PFL MLQ L +L+ K RI +PN +++G DE
Sbjct: 712 VFLQLHKLDVALALKDQSQGLLPFLGRMLQFVENHILRDLKYKARIPVPNAWTLVGVSDE 771
Query: 616 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 675
L +++ ++ R + GE ++G V+++++P +HPGD R++
Sbjct: 772 YDYLGENEIYARV-----RTIDGEEQY-----------LEGPVMISRSPTVHPGDARMVW 815
Query: 676 AVNVPA------LHHMVDCVVFPQKG 695
A+ P+ L + +CVVFP KG
Sbjct: 816 AIGKPSRGAPPGLEDLTNCVVFPCKG 841
>gi|302660624|ref|XP_003021989.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
gi|291185913|gb|EFE41371.1| hypothetical protein TRV_03883 [Trichophyton verrucosum HKI 0517]
Length = 1233
Score = 200 bits (509), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 145/463 (31%), Positives = 238/463 (51%), Gaps = 45/463 (9%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
V VHR VTP+ +Y GP NR+LR + +ID F+R+ F+DE D + P +
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDPSAN 472
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 372
+ R ++ GI I R+FEFL FS S LR + W F + G L A
Sbjct: 473 -----LEQIFHQRFAGVMKRGIEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDYLNA 527
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFS 431
I +G F IR+ +K AAR+GQ+FS + ++SV + + + PDVK + +FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMRAPDVK----RNDRIFS 583
Query: 432 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY 489
DG+G +S + ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM K+
Sbjct: 584 DGVGVISRDLMYRIWNEYALREKVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 490 ES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 547
+ +L +++ A + P +LN Q+I +L L + E F + Q++ + L + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLEVPFEAFHQLQQDEINFLYSTFNSTER 703
Query: 548 AQEALELMSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
A + LE SP + L L + G + +PFL +++ +L +L+ + RI +
Sbjct: 704 AAKFLE-DSPVPKSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRV 762
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
PN ++ G +DET L +++ G R+ +V+ VV+ ++
Sbjct: 763 PNAVTLYGIMDETGYLKENEIYCAYLGGD---------------GRREILVRDNVVITRS 807
Query: 664 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
P LHPGD++V+ AV+VPA L + +CV F Q G R + +ML
Sbjct: 808 PALHPGDIQVVNAVDVPANSPLRKLHNCVAFSQHGDRDLPSML 850
>gi|290974592|ref|XP_002670029.1| RNA-directed RNA polymerase [Naegleria gruberi]
gi|284083583|gb|EFC37285.1| RNA-directed RNA polymerase [Naegleria gruberi]
Length = 663
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 186/329 (56%), Gaps = 23/329 (6%)
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
MG+F +I+ AK AAR GQ +S+ ++ + D IE + D++ + + F+DGIGK+S
Sbjct: 1 MGDFTDIKTPAKVAARFGQCLTSTTPSIEITKD-IEPVEDIE----RNGFTFTDGIGKIS 55
Query: 439 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLD 497
E ++V K L ++ SA Q R GG KGV+A DPT +++ R S K+ S +L+
Sbjct: 56 EEMMQRVKEKLQLGESLLSAIQFRCGGGKGVLAIDPTLKGEQIVFRKSQFKFTSIQKQLE 115
Query: 498 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 557
++ +SK + FLNRQ I++L+ LGI DEIF KQRE +R + +I D KA E L +
Sbjct: 116 IVDYSKRRSGFLNRQFITILTALGIKDEIFMTKQREMIRSILSITDDVSKAYEWLSIYHS 175
Query: 558 GENTNILKELLICGYKPD---AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 614
+ +L Y P+ +E F+ ML +++ L LR KT+I+I +MG +D
Sbjct: 176 NHTRTFICHVL--KYVPEIATSENFIMNMLSSYKEQLLKGLRDKTKIYIEKSAYLMGAID 233
Query: 615 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
E L ++FV +S H ++ F +V+G +V KNP LH GD+R++
Sbjct: 234 EYGVLEENEIFVNLSPI----FHRPNAEFG--------VVKGRCIVGKNPSLHKGDLRIV 281
Query: 675 KAVNVPALHHMVDCVVFPQKGMRYILTML 703
AV+ P L+H+ D VVF +KG R I M+
Sbjct: 282 TAVDRPELYHLNDVVVFSKKGKRPITNMI 310
>gi|296416873|ref|XP_002838094.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633999|emb|CAZ82285.1| unnamed protein product [Tuber melanosporum]
Length = 1218
Score = 200 bits (508), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 148/467 (31%), Positives = 225/467 (48%), Gaps = 50/467 (10%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI---HSTDLS 313
+ VH V +TP+ YF GP NRVLR + + F+R++F +ED + + H D S
Sbjct: 437 MALVHHVSITPAGCYFFGPLPEPQNRVLRKYPDHHEYFIRVTFCEEDGEPLLFQHKVDQS 496
Query: 314 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY----G 369
P + R Y L GI I RKFEFL FSSS LR S W A Y
Sbjct: 497 P-----IYKNQFRFY------LSEGITIAGRKFEFLGFSSSSLRTQSCWFMAPFYLDGKY 545
Query: 370 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 429
L + +G+F I KYAAR+GQ+FS + ++ V + IPDV + G+T
Sbjct: 546 LDPKIVTSRLGDFSSITCPGKYAARVGQAFSDTYGSIDVRAEHEVEIPDV-VRNGRT--- 601
Query: 430 FSDGIGKVSAEFARKVASKC-GLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMR 487
FSDG+G +S + +V + L+ P+ FQIR+ G KGVV+ D K LR SM
Sbjct: 602 FSDGVGTISQQLLDRVWRESESLRKTRPTVFQIRFAGAKGVVSLDTRLVGDKFCLRPSMI 661
Query: 488 KYE-SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
K+ S K+++ + + P +LNR LI +L +G+++ F Q+EA+ L T
Sbjct: 662 KFRGSSDRKIEICNSADWLPMYLNRPLIKVLEDIGVFESTFMTLQKEAIEDLRQSTTSVA 721
Query: 547 KAQEALELMSPGENTN----ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
A L+ +++ L G+ + FL + + L L+ K RI
Sbjct: 722 NAANFLKRQRIASTAIRLPWVIESLNNLGFNFRDDHFLEQAFELSLITSLRSLKHKARIP 781
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
+ G +++G +DET L GQ++V + S+S S + G V++ +
Sbjct: 782 VKKGMTLVGVMDETGYLQEGQIYVTVQARDK----------STSES-----IAGRVLITR 826
Query: 663 NPCLHPGDVRVLKAVNV------PALHHMVDCVVFPQKGMRYILTML 703
+P HPGDV++ A+ L + +CV FPQ+G R + +ML
Sbjct: 827 SPVHHPGDVQMALAIGTNQLPPDSPLRALRNCVAFPQRGERDMPSML 873
>gi|326476492|gb|EGE00502.1| hypothetical protein TESG_07807 [Trichophyton tonsurans CBS 112818]
Length = 1207
Score = 199 bits (507), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 238/463 (51%), Gaps = 45/463 (9%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
V VHR VTP+ +Y GP NR+LR + +ID F+R+ F+DE D + P +
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDPSAN 472
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 372
+ R ++ G I R+FEFL FS S LR + W F + G L A
Sbjct: 473 -----LEQIFHQRFAGVMKRGFEIAGREFEFLGFSHSSLRAQTCWFAAPFTTSNGDHLNA 527
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFS 431
I +G F IR+ +K AAR+GQ+FS + ++SV + + + PDVK + +FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVK----RNDRIFS 583
Query: 432 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY 489
DG+G +S + ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM K+
Sbjct: 584 DGVGVISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 490 ES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 547
+ +L +++ A + P +LN Q+I +L LG+ E F + Q++ + L + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSAFNSTER 703
Query: 548 AQEALELMSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
A + LE SP + L L + G + +PFL +++ +L +L+ + RI +
Sbjct: 704 AAKFLE-DSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRV 762
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
PN ++ G +DET L +++ ++ R+ +V+ VV+ ++
Sbjct: 763 PNAVTLYGIMDETGYLKENEIYC---------------VYLGENGRREILVRDKVVITRS 807
Query: 664 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
P LHPGD++V+ AV+VP L + +CV F Q G R + +ML
Sbjct: 808 PALHPGDIQVVNAVDVPENSPLRKLHNCVAFSQHGDRDLPSML 850
>gi|326484092|gb|EGE08102.1| RNA-dependent RNA polymerase [Trichophyton equinum CBS 127.97]
Length = 1207
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 143/463 (30%), Positives = 238/463 (51%), Gaps = 45/463 (9%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
V VHR VTP+ +Y GP NR+LR + +ID F+R+ F+DE D + P +
Sbjct: 416 VLVHRATVTPAGIYLSGPYAETKNRILRKYLDNIDYFIRVEFLDETGDPVF---FDPSAN 472
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 372
+ R ++ G I R+FEFL FS S LR + W F + G L A
Sbjct: 473 -----LEQIFHQRFAGVMKRGFEIAGREFEFLGFSHSSLRAQTCWFAAPFTTANGDHLNA 527
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFS 431
I +G F IR+ +K AAR+GQ+FS + ++SV + + + PDVK + +FS
Sbjct: 528 RTIIGNIGYFDHIRSPSKQAARIGQAFSDTLTSISVSKEVVWMKAPDVK----RNDRIFS 583
Query: 432 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY 489
DG+G +S + ++ ++ L++ P+ FQIR G KG+V+ D + L LR+SM K+
Sbjct: 584 DGVGVISRDLMYRIWNEYALRERVKPTVFQIRIAGAKGMVSLDTRRKGEFLMLRESMVKF 643
Query: 490 ES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 547
+ +L +++ A + P +LN Q+I +L LG+ E F + Q++ + L + +
Sbjct: 644 PTDDLYNIEICGAGIRALPFYLNNQIIKILEDLGVPFEAFHQIQQDEINFLYSTFNSTER 703
Query: 548 AQEALELMSPGENTNILKELLIC----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
A + LE SP + L L + G + +PFL +++ +L +L+ + RI +
Sbjct: 704 AAKFLE-DSPVPRSLRLPWLFLVLKGLGIRYTQDPFLKRVMELTTLLRLRDLKYRARIRV 762
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
PN ++ G +DET L +++ ++ R+ +V+ VV+ ++
Sbjct: 763 PNAVTLYGIMDETGYLKENEIYC---------------VYLGENGRREILVRDKVVITRS 807
Query: 664 PCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
P LHPGD++V+ AV+VP L + +CV F Q G R + +ML
Sbjct: 808 PALHPGDIQVVNAVDVPENSPLRKLHNCVAFSQHGDRDLPSML 850
>gi|320593975|gb|EFX06378.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1259
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 169/558 (30%), Positives = 266/558 (47%), Gaps = 42/558 (7%)
Query: 169 LPYEILFKINLLVQNGCV-AGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 227
LP+ ILF++ L N + + D +V APVS+ ++ + +
Sbjct: 298 LPFSILFQLQALAWNAFLYPDTVADLASELVVLQKTAPVSVDAMKMLFTDIGWPTPNDAD 357
Query: 228 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVY-------VHRVQVTPSRVYFCGPEINVS 280
PS++ ++ + + ++ +GL+ + RV VTP+R+ GPE
Sbjct: 358 PSQFEVPALVAHLLKKEREIRSGYAIREGLLSPSENLAPICRVSVTPTRILLYGPEFEKK 417
Query: 281 NRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGIL 340
NRVLR F D F+R+ F DE+ D + L R +S ++Y R + ++NGI
Sbjct: 418 NRVLRKFPNQHDCFIRVQFCDENGDSLR---LLGRRTSYE-----KVYKRFIDIMKNGIQ 469
Query: 341 IGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFREIRNVAKYAARL 395
I R ++FL +S S LR S W F G T I +G+F IR+ AK AAR+
Sbjct: 470 IVGRTYKFLGWSHSSLRAHSMWFTAPFIDDTGRLQTHLTIISTLGDFAGIRSPAKCAARI 529
Query: 396 GQSFSSSKET--LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD 453
GQ+FS + LS H + ++ DVK + GK +VFSDG+G +S + A V
Sbjct: 530 GQAFSETPYAVPLSEHKISVMLVDDVKSKDGK--HVFSDGVGTISLDAAAAVWKYVPKSK 587
Query: 454 NPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES-ELTKLDVLAWSKYQPCFLNR 511
P+ FQ+RY G KG+++ D ++ LR SM K+ES E L++ +K P +LNR
Sbjct: 588 RNPTCFQVRYAGAKGMLSLDTRLQGSQILLRPSMIKFESNETENLEICDVAKAMPLYLNR 647
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 571
Q+I +L + + + F + Q +A++QL I + L+ S G + + K LL+
Sbjct: 648 QMIKILEDMSVPRKWFLRLQNDALQQLRLIASSAYNMAYFLKHQSVGTSIKLHKLLLLTD 707
Query: 572 YKPD---AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 628
EPFL + +L L+ K RI +P G ++ G +DET L GQV+V
Sbjct: 708 KLGLDYRTEPFLRRAAEAVVLRELRLLKHKARIPVPFGITLFGVMDETEFLAKGQVYVT- 766
Query: 629 SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HM 685
+ G R Q ++V ++P LHPGD++ + P H +
Sbjct: 767 ----FETKQG----LKPQRFEQPPGHAVYLLVTRSPALHPGDIQWACNMIPPEGHPLREL 818
Query: 686 VDCVVFPQKGMRYILTML 703
+CVVF KG R + + L
Sbjct: 819 SNCVVFSAKGARDLPSQL 836
>gi|353235420|emb|CCA67433.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1169
Score = 199 bits (507), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 153/487 (31%), Positives = 251/487 (51%), Gaps = 61/487 (12%)
Query: 243 RSKPSSPAISLDD-GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
RS+ ++ A S ++ G+ HR VTPS V GP + +NRV+R +R NF+R+ F +
Sbjct: 365 RSRGTAKARSDEESGVFECHRATVTPSSVVLTGPLPDETNRVIRKYRAYGHNFIRVDFTE 424
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
E D++H R D+T + RI ++NG+ + RKFE LA+SSS L+E +
Sbjct: 425 E--DRLHL-----RKEKNVDLTAI-LDDRIGEFMKNGLSVAGRKFELLAYSSSALKEHAV 476
Query: 362 WM---FASRYG--LTAAEIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEI 415
W F + G +T+ IR +G+F + I A+Y ARL Q+FSS++ +++V +DEI
Sbjct: 477 WFMTPFTTSDGQYITSESIRRSLGDFSKVIYCPARYGARLSQAFSSTEPSITVRVDEIRF 536
Query: 416 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP--------PSAFQIRYGGYK 467
IPD + + G +++DG+G +S + A+++ K + PSAFQIR GG K
Sbjct: 537 IPDKESDYGS---LYTDGVGTISPQAAKEIWHKYTESRSKRNRRRLKRPSAFQIRLGGLK 593
Query: 468 GVVAADPT-SSKKLSLRDSMRKYESELTKLDVL-AWSKYQPCFLNRQLISLLSTL-GIWD 524
G++ D + + +R+SM K+ S+ ++++ + + FLNR LI LL TL +
Sbjct: 594 GMLCVDNRLRGRVICVRESMNKFHSDDREVEIARVFDRPMAMFLNRPLIMLLETLKKVPL 653
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAE---- 577
E F Q +AV + + A LE G T++ +L G +
Sbjct: 654 EPFMALQTKAVEETRDAMKSFDAAARILERYGLGTAFRLTSVFLQLHKLGVSLALKDRSQ 713
Query: 578 ---PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR 634
PFL MLQ L +L+ K RI +PN +++G DE L +++ ++ R
Sbjct: 714 GLLPFLGRMLQFVENHILRDLKYKARIPVPNAWTLVGVSDEYDYLGENEIYARV-----R 768
Query: 635 QLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHMVDC 688
+ GE ++G V+++++P +HPGD R++ A+ P+ L + +C
Sbjct: 769 TIDGEEQY-----------LEGPVMISRSPTVHPGDARMVWAIGKPSRGAPPGLEELTNC 817
Query: 689 VVFPQKG 695
VVFP KG
Sbjct: 818 VVFPCKG 824
>gi|312081788|ref|XP_003143174.1| hypothetical protein LOAG_07593 [Loa loa]
Length = 1450
Score = 199 bits (505), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 150/479 (31%), Positives = 235/479 (49%), Gaps = 82/479 (17%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
+G V +V +TP+RV PE+ + NRVLR F +D + LRI F D+D
Sbjct: 365 EGYQRVRKVVITPTRVLLVVPELLMGNRVLRTFDKDGNGALRIQFRDDD----------- 413
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 374
G+ +T F +L S+SQ+R++ + + G A +
Sbjct: 414 -GTPST-------------------------FVYLGSSNSQMRDNGCYFYDDGKGGQAHK 447
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKE-TLSVHMDEIEIIPDV--KIEIGKTKYVFS 431
IRE +G F N+ K +R+GQ F+ +K T+++ + DV + + Y+FS
Sbjct: 448 IREQLGKFDRC-NIPKMMSRMGQCFTQAKRCTVTLKRHKYNKTYDVIGGRDTNQAFYIFS 506
Query: 432 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT--------SSKKLSLR 483
DG GKVS EFA K+A GL + PS +QIR+ G KGV++ DP+ ++ +
Sbjct: 507 DGAGKVSKEFAEKIALDIGLGTSVPSCYQIRHRGIKGVLSVDPSLDQRKHWAAANNVVDN 566
Query: 484 DSMRKYESELTKL----------------DVLAWSKYQPCFLNRQLISLLSTL-GIWDEI 526
+ M +++L L +++ +S LNR +IS+L + G+
Sbjct: 567 NKMTNKQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTSVCLNRPMISILDQVSGMQGFS 626
Query: 527 FEKKQREAVRQLDAI----LTDPLKAQEAL--ELMSPGENTNILKELLICGYKPDAEPFL 580
++ R+ + L I L D L ++E +L N+ + L G+ EPF
Sbjct: 627 VHERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPWRVNVSRLTLARGFALTQEPFF 686
Query: 581 SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 638
+L+ L +L K +I +P GRSM G +DET L +GQVFVQ + + +
Sbjct: 687 RSLLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETGQLQWGQVFVQCTRSIW----- 741
Query: 639 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
L + S+S + I+ G V++ KNPC+ GDVRV +AV++P LHH+VD VVFPQ G R
Sbjct: 742 ---LKTPSKSAAKIILVGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPR 797
>gi|312082346|ref|XP_003143407.1| RNA dependent RNA polymerase [Loa loa]
Length = 1312
Score = 198 bits (504), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 157/492 (31%), Positives = 234/492 (47%), Gaps = 75/492 (15%)
Query: 252 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 311
S ++G V + +TP+R+ PE+ + NRVLR F D LRI F D+D
Sbjct: 214 SANEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDD-------- 265
Query: 312 LSPRGSSATDITRTRIYTRILST-----LRNGILIGDRKFEFLAFSSSQLRESSAWMFAS 366
T + R ++ + I+ T L +GI I + F +LA S+SQ+R++ + F
Sbjct: 266 -------GTHLRRNKVGSYIIETTVHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFND 318
Query: 367 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 426
+IRE +G F N+ K +R+GQ F+ SKE+ V + + + GK
Sbjct: 319 GDDGRVGKIREKLGKFDRT-NIPKLMSRMGQCFTQSKES-DVVLKRKKYNKTYDVIGGKD 376
Query: 427 K----YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL-- 480
++FSDG+GK+S +FA ++A GL PS FQ R G KGV++ DP ++
Sbjct: 377 SCGEPFIFSDGVGKLSEDFAERIAKDLGLNKCVPSCFQFRLRGLKGVLSVDPALRQRRLW 436
Query: 481 ----SLRDSMRKYESELTKLDVL-------------------AWSKYQPCFLNRQLISLL 517
+ D RK E ++ LDVL +S P LNR I++L
Sbjct: 437 AECNDVEDKNRKTE-KVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINIL 495
Query: 518 STLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 567
+ I I R+ ++ DA++++ K +E L N L
Sbjct: 496 DQVSDMQGFDVHRRIVHRIHGLLDRQLLQLSDALMSEN-KCRERLAEFPRRINVQYLS-- 552
Query: 568 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVF 625
L G+ EPF +L L + K +I IP GR+M G LDET L YGQVF
Sbjct: 553 LARGFTLTQEPFFRGLLIASVRFTLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVF 612
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
VQ + SL + S++ + IV+G V++ KNP + GDVRV +A+++P L H+
Sbjct: 613 VQFTN--------NVSLKTPSKAAAKTIVKGPVLITKNPSIVAGDVRVFEAIDLPELRHL 664
Query: 686 VDCVVFPQKGMR 697
VD VVFPQ G R
Sbjct: 665 VDVVVFPQHGPR 676
>gi|346977552|gb|EGY21004.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1444
Score = 198 bits (504), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 120/335 (35%), Positives = 190/335 (56%), Gaps = 16/335 (4%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V +V VTP+ +Y P + SNRV+R ++ D FLR+ F DE + +S R
Sbjct: 490 VRKVVVTPTTIYLSSPGVEASNRVIRKYQHVSDRFLRVQFTDE----LTRGRISTRAKME 545
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 379
D ++ R+ T+ NGI IGDR ++FLAF +SQ+RE A+ F L E+R+WM
Sbjct: 546 LD---HYVFKRVYLTMINGIRIGDRHYKFLAFGNSQIRECGAYFFCETAHLKCTEMRQWM 602
Query: 380 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 439
GNF I VAK+AARLGQ FS+++E S+ I+IIPD++ + + F+DG+GK+S+
Sbjct: 603 GNFNHIHIVAKFAARLGQCFSTTREIRSIRAPNIQIIPDIE----RNGHCFTDGVGKISS 658
Query: 440 EFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLD 497
A V + GL+ PSAFQ R GG KGV+A P + + +R S K+++ L+
Sbjct: 659 FLASMVLEEMGLETVETPSAFQFRMGGCKGVLAVWPEAKGMYVHIRKSQEKFKATFNGLE 718
Query: 498 VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 557
++ +++ LNRQ I++L++LGI E+F + + + + D A L
Sbjct: 719 IIRCARFSVATLNRQTITILTSLGIKSEVFMDLLQRQLHGYEKAMNDQGAAAVLLGRHID 778
Query: 558 GENTNI-LKELLICGY-KPDA-EPFLSMMLQTFRA 589
+T++ L++L+ G+ + D EPF+ +LQ +R
Sbjct: 779 ENHTSLALRDLINWGFMRHDVQEPFVLTILQLWRG 813
Score = 60.8 bits (146), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 36/49 (73%)
Query: 655 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
+G+ +V +NP LHPGDVRV++AV+VP L HM + VVFP G + +ML
Sbjct: 812 RGVCIVGRNPSLHPGDVRVVEAVDVPQLRHMKNVVVFPSTGDVDVPSML 860
>gi|392886219|ref|NP_001250556.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
gi|345107385|emb|CCD31066.1| Protein RRF-1, isoform b [Caenorhabditis elegans]
Length = 1520
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 154/501 (30%), Positives = 245/501 (48%), Gaps = 80/501 (15%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
+G V +V TP+RV + PE + NRVLR F +D LR++F D++ K+ S
Sbjct: 378 EGYQRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRS----- 432
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY------ 368
++T + L +G+ I +R++ FL S+SQ+R++ A+ F R+
Sbjct: 433 ------NVTGKLLDRTANKYLEHGVRIANREYGFLGCSNSQMRDNGAY-FMMRFTDKQLD 485
Query: 369 -----GLTAA---------EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIE 414
TA+ E+R +G F EI NV K ARLGQ F+ S+ T V + +
Sbjct: 486 RFYKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLT-GVGLGRDD 544
Query: 415 IIPDVKIEIGK----TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 470
+ G+ ++Y FSDG+G +S +FA++V+ PS FQIR+ G KGV+
Sbjct: 545 YCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVI 604
Query: 471 AADP--------------TSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFL---NR 511
A +P TS K K R S K++++ D + K+ L N+
Sbjct: 605 AIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNK 664
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT---NILKEL- 567
I++L D++ E + + +++ + + + + Q E T N LKE
Sbjct: 665 PFINIL------DQVSEMQSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFP 718
Query: 568 ---------LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDET 616
+ G+ +EPF +++ + + K +I IP+ GRSM+G +DET
Sbjct: 719 RRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDET 778
Query: 617 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 676
L YGQ+FVQ + ++L S +++ IV G V++ KNPC+ PGDVR+ +A
Sbjct: 779 GRLQYGQIFVQYTKNYKKKLPPRDS---NNKVHGSEIVTGTVLLTKNPCIVPGDVRIFEA 835
Query: 677 VNVPALHHMVDCVVFPQKGMR 697
V++P LHHM D VVFPQ G R
Sbjct: 836 VDIPELHHMCDVVVFPQHGPR 856
>gi|238015130|gb|ACR38600.1| unknown [Zea mays]
Length = 525
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 97/214 (45%), Positives = 144/214 (67%), Gaps = 4/214 (1%)
Query: 486 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
M+K+ES+ T L++ WSK QPC++NR++ISLLSTLGI DE+FE Q++ + + D +LT+
Sbjct: 1 MKKFESKSTMLNITNWSKSQPCYVNREIISLLSTLGIKDEVFESMQQDDMHESDGMLTNK 60
Query: 546 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 605
A L + G +T ++L+ GY+P +EP+L M+L+ RA++L ++RT+ +I +
Sbjct: 61 EAALSVLGKIGGG-DTKTAADMLLQGYEPSSEPYLLMILKAHRANRLTDIRTRCKIHVQK 119
Query: 606 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
GR ++GCLDET L YGQV+++I+ Q + E F + + IV G V + KNPC
Sbjct: 120 GRVLIGCLDETCKLEYGQVYIRITKNHKEQKYSEQPFFCNDDGKTAVIV-GKVAITKNPC 178
Query: 666 LHPGDVRVLKAVNVPAL--HHMVDCVVFPQKGMR 697
LHPGDVRVL+AV P L ++DCVVFPQ+G R
Sbjct: 179 LHPGDVRVLEAVYDPGLDARGLIDCVVFPQRGER 212
>gi|393908637|gb|EJD75145.1| CBR-RRF-1 protein [Loa loa]
Length = 1689
Score = 198 bits (503), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 157/492 (31%), Positives = 234/492 (47%), Gaps = 75/492 (15%)
Query: 252 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 311
S ++G V + +TP+R+ PE+ + NRVLR F D LRI F D+D
Sbjct: 578 SANEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDEHGDRALRIQFRDDD-------- 629
Query: 312 LSPRGSSATDITRTRIYTRILST-----LRNGILIGDRKFEFLAFSSSQLRESSAWMFAS 366
T + R ++ + I+ T L +GI I + F +LA S+SQ+R++ + F
Sbjct: 630 -------GTHLRRNKVGSYIIETTVHNCLLHGIYISNSHFVYLASSNSQMRDNGCYFFND 682
Query: 367 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 426
+IRE +G F N+ K +R+GQ F+ SKE+ V + + + GK
Sbjct: 683 GDDGRVGKIREKLGKFDRT-NIPKLMSRMGQCFTQSKES-DVVLKRKKYNKTYDVIGGKD 740
Query: 427 K----YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL-- 480
++FSDG+GK+S +FA ++A GL PS FQ R G KGV++ DP ++
Sbjct: 741 SCGEPFIFSDGVGKLSEDFAERIAKDLGLNKCVPSCFQFRLRGLKGVLSVDPALRQRRLW 800
Query: 481 ----SLRDSMRKYESELTKLDVL-------------------AWSKYQPCFLNRQLISLL 517
+ D RK E ++ LDVL +S P LNR I++L
Sbjct: 801 AECNDVEDKNRKTE-KVNDLDVLFRPSQDKFHAPRKEMIEIVKYSSPTPVCLNRPFINIL 859
Query: 518 STLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 567
+ I I R+ ++ DA++++ K +E L N L
Sbjct: 860 DQVSDMQGFDVHRRIVHRIHGLLDRQLLQLSDALMSEN-KCRERLAEFPRRINVQYLS-- 916
Query: 568 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVF 625
L G+ EPF +L L + K +I IP GR+M G LDET L YGQVF
Sbjct: 917 LARGFTLTQEPFFRGLLIASVRFTLQKQLFKEQIQIPANLGRTMFGILDETGLLQYGQVF 976
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
VQ + SL + S++ + IV+G V++ KNP + GDVRV +A+++P L H+
Sbjct: 977 VQFTN--------NVSLKTPSKAAAKTIVKGPVLITKNPSIVAGDVRVFEAIDLPELRHL 1028
Query: 686 VDCVVFPQKGMR 697
VD VVFPQ G R
Sbjct: 1029 VDVVVFPQHGPR 1040
>gi|392886217|ref|NP_001250555.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
gi|8886070|gb|AAF80368.1|AF159144_1 RRF-1 [Caenorhabditis elegans]
gi|14530419|emb|CAC42290.1| Protein RRF-1, isoform a [Caenorhabditis elegans]
Length = 1601
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 154/501 (30%), Positives = 245/501 (48%), Gaps = 80/501 (15%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
+G V +V TP+RV + PE + NRVLR F +D LR++F D++ K+ S
Sbjct: 459 EGYQRVRKVIFTPTRVIYIAPETIMGNRVLRKFDKDGTRVLRVTFRDDNNKKMRS----- 513
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY------ 368
++T + L +G+ I +R++ FL S+SQ+R++ A+ F R+
Sbjct: 514 ------NVTGKLLDRTANKYLEHGVRIANREYGFLGCSNSQMRDNGAY-FMMRFTDKQLD 566
Query: 369 -----GLTAA---------EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIE 414
TA+ E+R +G F EI NV K ARLGQ F+ S+ T V + +
Sbjct: 567 RFYKCNPTASNINFKPKIDEVRFQLGRFSEIENVPKLMARLGQCFTQSRLT-GVGLGRDD 625
Query: 415 IIPDVKIEIGK----TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 470
+ G+ ++Y FSDG+G +S +FA++V+ PS FQIR+ G KGV+
Sbjct: 626 YCSTYDLTGGRATNGSEYTFSDGVGMMSYQFAQEVSQAMQFGKAVPSCFQIRFRGNKGVI 685
Query: 471 AADP--------------TSSK--KLSLRDSMRKYESELTKLDVLAWSKYQPCFL---NR 511
A +P TS K K R S K++++ D + K+ L N+
Sbjct: 686 AIEPFLDEIRKWALVNGVTSMKMAKCLFRPSQIKFQAKAISGDQIEMVKFSSAVLVALNK 745
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT---NILKEL- 567
I++L D++ E + + +++ + + + + Q E T N LKE
Sbjct: 746 PFINIL------DQVSEMQSLDCHKRITSRIEELMDRQILSFAKQMNEETFCRNKLKEFP 799
Query: 568 ---------LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDET 616
+ G+ +EPF +++ + + K +I IP+ GRSM+G +DET
Sbjct: 800 RRIDIDNLRTMWGFTLSSEPFFRSLIKASIKFSITKQLCKEQIQIPSELGRSMLGVVDET 859
Query: 617 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 676
L YGQ+FVQ + ++L S +++ IV G V++ KNPC+ PGDVR+ +A
Sbjct: 860 GRLQYGQIFVQYTKNYKKKLPPRDS---NNKVHGSEIVTGTVLLTKNPCIVPGDVRIFEA 916
Query: 677 VNVPALHHMVDCVVFPQKGMR 697
V++P LHHM D VVFPQ G R
Sbjct: 917 VDIPELHHMCDVVVFPQHGPR 937
>gi|85110327|ref|XP_963405.1| hypothetical protein NCU08435 [Neurospora crassa OR74A]
gi|28881256|emb|CAD70515.1| related to RNA-directed RNA polymerase [Neurospora crassa]
gi|28925084|gb|EAA34169.1| predicted protein [Neurospora crassa OR74A]
Length = 1351
Score = 197 bits (501), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 145/464 (31%), Positives = 234/464 (50%), Gaps = 44/464 (9%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
GL ++R VTP+R+ GPE+ NR+LR F D+FLR+ F +ED DL
Sbjct: 410 GLTKIYRALVTPTRIELHGPELEAKNRILRKFPEHQDHFLRVQFAEED-----GQDLFFN 464
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-----SRYGL 370
+ + D IY R L NGI +G R + FL FS S LR S W+ A + L
Sbjct: 465 SAVSMDA----IYQRFKDVLTNGISVGGRVYRFLGFSHSSLRAHSLWLAAPFIYDGKLQL 520
Query: 371 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
A+ I E +G+FR I + A+ AAR+GQ+FS + ++S++ I++I + ++ + + VF
Sbjct: 521 -ASNIIEDLGDFRNIMSPARRAARIGQAFSETPYSVSLYDHGIDVI--RQRDVKRNERVF 577
Query: 431 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY 489
SDG+G +S + + P+ Q+R+ G KG++A D + +++ +RDSM K+
Sbjct: 578 SDGVGIISQGALEVIHREIPESKGYPNCLQVRWAGAKGMLALDARLTGRQICIRDSMEKF 637
Query: 490 ----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
E L D+ SK P LNRQ+I +L + + F + Q + +++L AI +
Sbjct: 638 RSRDEEHLEICDMA--SKPIPLMLNRQMIKILEDMRAPAQWFLELQEKELQRLRAITDNV 695
Query: 546 LKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
L+L G++ ++ LK+L + FL +++ +L L+ K RI
Sbjct: 696 QNVATFLKLQCVGDSVHLSQFLKDLDKMNIDYRRDQFLRGIVEAVVLRELRLLKHKARIP 755
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
+P G ++ G +DET L G+V+V R F + G VVV +
Sbjct: 756 VPYGVTLFGVMDETGLLREGEVYVTFETVDGR--------FKDPPT------AGPVVVTR 801
Query: 663 NPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
+P LHPGD+++ PA H + +C+VF Q G R + + L
Sbjct: 802 SPALHPGDIQIAHNAIPPAGHPLRELKNCIVFSQNGERDLPSQL 845
>gi|310795671|gb|EFQ31132.1| RNA dependent RNA polymerase [Glomerella graminicola M1.001]
Length = 1313
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 153/486 (31%), Positives = 236/486 (48%), Gaps = 40/486 (8%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
V V + VTP+R+ GPE NRVLR F F+R++F DED + +PR
Sbjct: 440 VQVFKAMVTPTRITLHGPEPEPLNRVLRRFPDHTSYFMRVTFCDEDGGDLF---FNPR-- 494
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA----- 372
++ +I+ R L GI I R ++FL FS S LR SAW A T
Sbjct: 495 ----VSYDQIFDRYRKVLNGGIPIAGRVYQFLGFSHSSLRSHSAWFSAPFVDSTGKLQLY 550
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKE--TLSVHMDEIEIIPDVKIEIGKTKYVF 430
A I + +G+F I+ AK AAR+GQ+FS + LS H IPDVK GK + VF
Sbjct: 551 ANIIKSLGDFDHIQIPAKCAARIGQAFSETPAFINLSEHRIRHWDIPDVKSHDGKIQRVF 610
Query: 431 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSL-RDSMRK 488
SDG+G +S E V + + P+ QIR+GG KG+++ + S + + + R+SM K
Sbjct: 611 SDGVGTISQEAIELVWPRLPQRSLIPTCLQIRWGGVKGMLSLESRLSGRSICIRRESMEK 670
Query: 489 YES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
+ S ++ L++ A SK LNRQ+I ++ LG+ F + Q+ + +L A+ D
Sbjct: 671 FPSTDVQNLEICDAASKPLKLVLNRQMIKIMEDLGVDKNFFLRLQKNELDRLRAVTADAY 730
Query: 547 KAQEALELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
L L G +K L G + FL ++++ +L L+ K RI +
Sbjct: 731 NTGTFLHLQGVGSAFFLPTFIKSLEKYGIDYRRDDFLRAVVESTVLRELRLLKHKARIPV 790
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
P G ++ G +DET L G+V+V ++ +R + G V+V ++
Sbjct: 791 PQGATLFGVMDETGFLKEGEVYVCY----------DTYKSPGKAPTERSLRDGRVLVTRS 840
Query: 664 PCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTMLKPRLLWYELNS----SH 716
P LHPGD+++ P H ++ +CV F Q G R + + L L +L +
Sbjct: 841 PALHPGDIQLANMRTPPPGHPLRNLRNCVAFSQHGQRDLPSQLSGGDLDGDLYNIIWDKQ 900
Query: 717 ALPRFI 722
A+PR+I
Sbjct: 901 AMPRWI 906
>gi|241633128|ref|XP_002410399.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215503416|gb|EEC12910.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 756
Score = 196 bits (499), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 206/386 (53%), Gaps = 32/386 (8%)
Query: 232 LTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI 291
L + +RK+ + P P G V RV VTPS V+F P ++ NRVLR F D
Sbjct: 391 LPELFRKFCLAYVPPKVP-----RGSCLVRRVFVTPSCVFFLPPNVHSENRVLRCF--DA 443
Query: 292 DNFLRISFIDEDLDKI-HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLA 350
+ LR+SF D++L + HS + D T + LR GI +G R+F+FLA
Sbjct: 444 EYALRVSFRDDNLQHLSHSLMFHRQKEEMVD-------TIVAKFLRTGIEVGGRQFKFLA 496
Query: 351 FSSSQLRESSAWMFA-SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSV- 408
S SQLR+ W++A R G TA IR WMG+F I NVAK AR+GQ FSS++E++ V
Sbjct: 497 SSCSQLRDHGVWLYAMDRQGFTAESIRRWMGDFSAIPNVAKKMARMGQCFSSTEESVKVP 556
Query: 409 -HMDEIEIIPDV---KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYG 464
H +E +PDV + ++ FSDGIG +S +KV K L + PSA QIRY
Sbjct: 557 LHGGNMEEVPDVVGGVHPVSGKEFTFSDGIGMISTSLMQKVCKKLDLAE-VPSAIQIRYA 615
Query: 465 GYKGVVAADPT-SSKKLSLRDSMRKYE-SELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 522
GYKG++ +P KL LRDSMRK+ S L+V+ S + +LNR LI++L LG+
Sbjct: 616 GYKGMLCVNPELRGDKLVLRDSMRKFSCSNSDSLEVIKVSAPRTVYLNRFLITILEQLGV 675
Query: 523 WDEIFEKKQREAVRQL-DAILTDPLKAQEALELMSP--GENTNILKELLICGYKPDAEPF 579
+F Q++ + DA++ + AL ++ G L+ L G+ +PF
Sbjct: 676 PSRVFLCLQQKMMLTFADALVCE----STALRVLCTYVGGTLPFLR-LQQNGFCLARDPF 730
Query: 580 LSMMLQTFRASKLLELRTKTRIFIPN 605
+ ++L T S + + R + ++F P
Sbjct: 731 VRLLLYTVYRSTMGKRRCRPQLFWPG 756
>gi|268563038|ref|XP_002638736.1| C. briggsae CBR-EGO-1 protein [Caenorhabditis briggsae]
Length = 1631
Score = 196 bits (498), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 154/511 (30%), Positives = 249/511 (48%), Gaps = 96/511 (18%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
+ +G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+
Sbjct: 484 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMR---- 539
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 372
T+ T T + + + L NGI + R F +L S+SQ+R++ A+ F +Y ++
Sbjct: 540 -------TNKTSTLLEKTVNTYLMNGITVAGRNFGYLGSSNSQMRDNGAY-FMEKY--SS 589
Query: 373 AEIREW----------------------MGNFREIRNVAKYAARLGQSFSSSKETLSVHM 410
++ RE+ +G F I N+ K ARLGQ F+ S+ + V++
Sbjct: 590 SQCREYEKMCRMAPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNL 648
Query: 411 DEIEIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 466
D + + GK +Y FSDG+G +S FA+ V+ PS FQ R+ G
Sbjct: 649 DRCTYVTMYDLTGGKNIKGDEYTFSDGVGMMSMNFAQMVSQVMDFGKGVPSCFQFRFRGM 708
Query: 467 KGVVAADP--TSSKKLSLRDSMRKYESELT----------------------KLDVLAWS 502
KGV+A +P ++ S+ + +++ + +++++ +S
Sbjct: 709 KGVIAVEPFLDDLRQWSIENDIQEVSEDTAWGLNCVFRPSQIKFISKRHPRDQVEIVKYS 768
Query: 503 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGE 559
P LN+ I++L D++ E + E R++ + + L Q A +++
Sbjct: 769 SPVPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMIDETF 822
Query: 560 NTNILKEL----------LICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--G 606
N LKEL G+ +EPF S++ + + S +LR K +I IP G
Sbjct: 823 CRNRLKELPRRIDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLR-KEQIPIPADLG 881
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
RSM+G +DET L YGQ+FVQ + R L + S+SRS ++ G V++ KNPC+
Sbjct: 882 RSMLGVVDETGRLQYGQIFVQYT----RNLALKLPPKSASRS----VLTGTVLLTKNPCI 933
Query: 667 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GDVR+ +AV++P LHHM D VVFPQ G R
Sbjct: 934 VAGDVRIFEAVDIPELHHMCDVVVFPQHGPR 964
>gi|341891713|gb|EGT47648.1| hypothetical protein CAEBREN_06166 [Caenorhabditis brenneri]
Length = 1640
Score = 196 bits (497), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 149/504 (29%), Positives = 231/504 (45%), Gaps = 76/504 (15%)
Query: 252 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 311
+ DG V +V TP+RV + PE + NRVLR F +D LRI+F D++
Sbjct: 480 EIHDGFQIVRKVVFTPTRVIYVAPEAIMGNRVLRRFDKDGTKVLRITFRDDN-------- 531
Query: 312 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF------- 364
G T+ T + R G+ + +R F FL S+SQ+R+S A+
Sbjct: 532 ---NGKMRTNTTEELLEKTANKFFREGVRVANRDFGFLGCSNSQMRDSGAYFMLKATPSQ 588
Query: 365 ----------ASR-----YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH 409
A+R Y E+R +G F E+ NV K AR+GQ F+ S+ T V
Sbjct: 589 LERFYRKNPRATREQLLNYKPLIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLT-GVA 647
Query: 410 MDEIEIIPDVKIEIGKTK----YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
++ E GK Y FSDG+G +S FA+ +A + PS FQIR+ G
Sbjct: 648 LERKNYCKIFDYEGGKNSKQATYTFSDGVGMMSCRFAKIMAQSMNYDRSVPSCFQIRFRG 707
Query: 466 YKGVVAADPTSSK-----------------KLSLRDSMRKYESELTKLDVLAWSKYQ--- 505
KGV+A +P ++ R S K++++ + D + K
Sbjct: 708 NKGVIAMEPQLDDLRNWAIRHALEEIIPEINVAFRPSQIKFQAKHIEGDQIEMVKPAGPV 767
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 565
P LN+ LI++L + + K+ V +++ ++ +++ A ++ N LK
Sbjct: 768 PVSLNKPLINILDQVSEMQGVVCHKR--MVSRIEELMDRQVQSF-AKQMNDETYCRNRLK 824
Query: 566 EL----------LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCL 613
E G+ EPF +++ + + K +I IP GR++ G +
Sbjct: 825 EFPRRVDIDYLRTTWGFTLSREPFFRSLIKAAIKFSITKQLRKEQIQIPKELGRTLFGVV 884
Query: 614 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 673
DET L YGQVFVQ S L+ + + +V G ++++KNPC+ PGDVR+
Sbjct: 885 DETGRLQYGQVFVQYSS---NILNKHPVRLADQSVQNGVVVTGKILISKNPCIVPGDVRI 941
Query: 674 LKAVNVPALHHMVDCVVFPQKGMR 697
+AV++P LHHM D VVFPQ G R
Sbjct: 942 FEAVDIPELHHMCDVVVFPQAGPR 965
>gi|403177737|ref|XP_003336185.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375173183|gb|EFP91766.2| hypothetical protein PGTG_17766 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1297
Score = 196 bits (497), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 152/478 (31%), Positives = 242/478 (50%), Gaps = 62/478 (12%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN-FLRISFIDEDLDKIHSTDLS 313
+G+ V +TP+ + GP N +LR + D ++ F+R++ +ED H D
Sbjct: 478 EGIFKCRTVTITPTSLVLDGPCAEQGNSILRFY--DFNSAFIRVALREED-GAPHRWD-- 532
Query: 314 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGL 370
++ ++ L N +L+ R+FEFL +S+S LR AW F R L
Sbjct: 533 ------RNVDLPEFFSHRYRPLANCLLLAGRQFEFLCYSASALRSHQAWFVCPFIHRGEL 586
Query: 371 -TAAEIREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 428
TA +IR +G+F ++ N+ A+Y AR+GQ+F+++++ +++ +I++I DV+ +
Sbjct: 587 ITATKIRNRIGSFPKVINIPARYMARVGQAFTTTRKAVTLQPSQIKLIEDVE----RNGS 642
Query: 429 VFSDGIGKVSAEFARKV----ASKCGLKDNPP-----SAFQIRYGGYKGVVAADPT-SSK 478
VF+DG+G +S A+KV A G K PP S +QIR GGYKG+++ D T
Sbjct: 643 VFTDGVGTISLSLAKKVEHALAGPTGSK--PPTELQASCYQIRLGGYKGMLSLDTTLEGD 700
Query: 479 KLSLRDSMRKYESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 537
+ LR SM+K+E E LD+ + + P FLNRQLI +L LGI ++F Q E V
Sbjct: 701 IVRLRPSMKKFEGESYTLDIAEKFDRPFPAFLNRQLIKILEDLGISGQVFLDAQAETVAM 760
Query: 538 LD---AILTDPLKAQEALELMSPGENTNILKEL--LICGYKPDAE--PFLSMMLQTFRAS 590
++ + E L S E ILK+L L+ +P+ F+ L
Sbjct: 761 VENSQGSMNQSSLVMERAGLGSAVELPQILKQLGRLMDSDRPEEIRCSFVQDSLDLLAVH 820
Query: 591 KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 650
L EL+ TRI +P +++G DE L Q+FV I G R
Sbjct: 821 CLRELKYNTRIPLPGSFNLVGVADEDGCLLENQIFVPIQLPGQR---------------- 864
Query: 651 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA-----LHHMVDCVVFPQKGMRYILTML 703
++ ++G +A++PCLHPGD++V+ A+ P L +V+CVVFP G R + + L
Sbjct: 865 KYCLKGRFAIARSPCLHPGDIQVVYAIGDPPVGSRRLASLVNCVVFPVIGKRSLPSCL 922
>gi|281205109|gb|EFA79302.1| hypothetical protein PPL_07720 [Polysphondylium pallidum PN500]
Length = 3481
Score = 196 bits (497), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 143/457 (31%), Positives = 229/457 (50%), Gaps = 56/457 (12%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
L+ ++ + VTPSR+ F P + +NR +R F D FL + +E + S D
Sbjct: 1135 LNANFCWIKKAYVTPSRILFQRPLMVQTNRAIRLFGPD--RFLMVQITEETISD--SIDY 1190
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILI-GDRKFEFLAFSSSQLRESSAWMFASRYGLT 371
P I +L L +GI + G ++ FL +S+SQLR+++ W + +
Sbjct: 1191 QPL-----------ISKLMLDKLIDGIAVAGYGQYHFLGYSNSQLRKNTCWFYCPD-AID 1238
Query: 372 AAEIREWMGNFREI--------RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 423
+ + + + ++I +Y L F S+ +L + + I +PDV
Sbjct: 1239 SLDDAPSLDDVKQILIGDTSIYTEPRQYLRSLSLVFPSTTPSLLIPAEHIHEVPDVVS-- 1296
Query: 424 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLR 483
T +FSDGIG + A +V L + AFQIR GYKGVV PT + LR
Sbjct: 1297 ANTGQIFSDGIGYIGKRVALQVIEFASLPEET-CAFQIRIAGYKGVVTIHPTIDDGIYLR 1355
Query: 484 DSMRKYESELTK-----LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 538
SM+K++++LT+ L++++ + PC LNRQ+I+LLS LG+ D+ F + Q+EA+ L
Sbjct: 1356 PSMKKFQADLTQQHNCILEIISINGDNPCHLNRQVINLLSGLGVPDQYFLRLQKEALMDL 1415
Query: 539 DAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTK 598
+L +P ++ E + P T I KE L ++P + ++ + E K
Sbjct: 1416 ADLLHNPAESIRCSEDL-PWLRT-IEKEDL------RSDPMIRSLVHLVYQKSIAEYSDK 1467
Query: 599 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLV 658
I I NG++++G LDET L GQV++ I Y +G+S ++QG V
Sbjct: 1468 CFIPIANGKTIIGVLDETGLLEAGQVYINI----YNTKNGQS-----------MVIQGAV 1512
Query: 659 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
V KNPCLHPGDVR+L+ ++ L H+ + VVF +G
Sbjct: 1513 AVCKNPCLHPGDVRILQGTDIELLSHLKNVVVFSARG 1549
>gi|341880571|gb|EGT36506.1| hypothetical protein CAEBREN_02888 [Caenorhabditis brenneri]
Length = 1640
Score = 195 bits (496), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 160/548 (29%), Positives = 244/548 (44%), Gaps = 93/548 (16%)
Query: 208 ISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTP 267
I CI LDK+ C Q R+ M + S I DG V +V TP
Sbjct: 453 IGCITKCLDKI------C---------QKRERMQLINGLSEKEIH--DGFQIVRKVVFTP 495
Query: 268 SRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 327
+RV + PE + NRVLR F +D LRI+F D++ K+ T+ T +
Sbjct: 496 TRVIYVAPEAIMGNRVLRRFDKDGTKVLRITFRDDNNSKMR-----------TNTTEELL 544
Query: 328 YTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--------------------- 366
R G+ + +R F FL S+SQ+R+S A+
Sbjct: 545 EKTANKFFREGVRVANRDFGFLGCSNSQMRDSGAYFMLKATPGQLERFYRKYPRHTREQL 604
Query: 367 -RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 425
Y E+R +G F E+ NV K AR+GQ F+ S+ T V ++ E GK
Sbjct: 605 LSYKPWIDEVRLNLGKFSEVENVPKMIARMGQCFTQSRLT-GVALERKNYCKIFDYEGGK 663
Query: 426 TK----YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--- 478
Y FSDG+G +S FA+ +A + PS FQIR+ G KGV+A +P
Sbjct: 664 NSKKAAYTFSDGVGMMSCRFAKIMAQSMNYDRSVPSCFQIRFRGNKGVIAMEPQLDDLRN 723
Query: 479 --------------KLSLRDSMRKYESELTKLDVLAWSKYQ---PCFLNRQLISLLSTLG 521
K++ R S K++++ + D + K P LN+ LI++L +
Sbjct: 724 WSIRHQLDDLIPEIKVAFRPSQIKFQAKHIEGDQIEMVKPAGPVPVSLNKPLINILDQVS 783
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL----------LICG 571
+ K+ V +++ ++ +++ A ++ N LKE G
Sbjct: 784 EMQGVLCHKR--MVSRIEELMDRQVQSF-AKQMNDETYCRNRLKEFPRRVDIDYLRTTWG 840
Query: 572 YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQIS 629
+ EPF +++ + + K +I IP GR++ G +DET L YGQVFVQ S
Sbjct: 841 FTLSREPFFRSLIKAAIKFSITKQLRKEQIPIPKELGRTLFGVVDETGRLQYGQVFVQYS 900
Query: 630 GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 689
L+ + + +V G ++++KNPC+ PGDVR+ +AV++P LHHM D V
Sbjct: 901 S---NILNKHPVRLADQSVQNGVVVTGPILISKNPCIVPGDVRIFEAVDIPELHHMCDVV 957
Query: 690 VFPQKGMR 697
VFPQ G R
Sbjct: 958 VFPQSGPR 965
>gi|226291786|gb|EEH47214.1| predicted protein [Paracoccidioides brasiliensis Pb18]
Length = 1257
Score = 195 bits (495), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 146/457 (31%), Positives = 214/457 (46%), Gaps = 116/457 (25%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSP 314
G Y+ +VTPS +Y+ P I+ NR+ R + D FLR+ F DE ++ KI
Sbjct: 399 GYYYMRSAEVTPSTIYYKPPSIDTGNRIFRRYLEYADRFLRVRFTDEKNMGKIFPY---- 454
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 374
S+A + +YTR+ T++NGI IGDR +EFLAFS++QLRE +A+ FAS LTAA
Sbjct: 455 --SNANIVCMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAAN 512
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 434
I + V +D+IE + Y FSDG+
Sbjct: 513 ILQI-----------------------------VEIDDIE----------RNGYTFSDGV 533
Query: 435 GKVSAEFARKVASKCG---LKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYES 491
G +S A+ + S+ L PPS FQ R GG K +
Sbjct: 534 GLISKFLAQMIQSEFAIETLSGEPPSVFQFRLGGCK-----------------------A 570
Query: 492 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 551
L+++ S + LNRQLI +LS+LGI DE+F KK + + L+ +T +A +
Sbjct: 571 PHNGLEIIRHSSFCFASLNRQLIIVLSSLGIPDEMFVKKLQAMLENLELAMTSQEQAIDL 630
Query: 552 LEL-MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
L+ + P + T +L ++ G ++
Sbjct: 631 LQTYVDPNQMTLVLADM--------------------------------------GAFLL 652
Query: 611 GCLDETRTL-NYGQVFVQISGAGYRQ-LHGESSLFS--SSRSRQRF-IVQGLVVVAKNPC 665
GCLDET +L Y + GA Y Q L +F S S + +++GL ++A+NP
Sbjct: 653 GCLDETGSLKGYFRSKRPGGGATYEQKLDCLPEIFVQISRHSEGTYEVIEGLCILARNPS 712
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
LHPGD+RV+KAV++P LHH+ D VV PQ G R I +M
Sbjct: 713 LHPGDIRVVKAVDIPGLHHLKDVVVLPQTGDRDIASM 749
>gi|115436872|ref|XP_001217666.1| predicted protein [Aspergillus terreus NIH2624]
gi|114188481|gb|EAU30181.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1039
Score = 195 bits (495), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 163/567 (28%), Positives = 267/567 (47%), Gaps = 62/567 (10%)
Query: 169 LPYEILFKINLLVQNGCV---AGPLLDSNFYRLVDPYR----APVSISCIEHALDKLYHL 221
LP+ +L+++ LV N + +L S + R AP+S + L+ ++
Sbjct: 284 LPFGVLYQLQALVYNAYLHPTTVQILGSKLCAISQDRRQRGLAPISADAVRTLLNTVHWA 343
Query: 222 ----KECCYEPSRWLTDQY--RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 275
++P L R+ R+ S + L V +HRV V+P+R+ F GP
Sbjct: 344 LPFDNPEVFQPDSLLATLRLDREAKMERTTQKSVSADLSSDHVLIHRVSVSPARITFHGP 403
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL--SPRGSSATDITRTRIYTRILS 333
E NRV+R F R F+R+ F DE +DL +P+ +I+ R +
Sbjct: 404 EREPQNRVIRKFPRHHAYFIRVQFCDE-----RGSDLFFNPKHDYE------QIFQRFRT 452
Query: 334 TLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG------LTAAEIREWMGNFREIRN 387
L GI I R + FL FS S LR S W F+S + T++ I + +GNF I +
Sbjct: 453 VLTLGIQIAGRTYTFLGFSHSSLRSHSVW-FSSPFIDGDGSLQTSSSIIKALGNFSGITS 511
Query: 388 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
A+ AAR+GQ+F+ + TL V +E I D I VFSDGIG +S E ++
Sbjct: 512 PARCAARIGQAFTETPFTLPVQNVVVEYIED--ITSSDESRVFSDGIGTISLEVVERIWK 569
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYES-ELTKLDVLAW-SKY 504
K P+ FQ+R GG KG+++ D + +R SM K+ + ++ L + S+
Sbjct: 570 GIPQKKGTPTCFQVRLGGAKGMLSLDSRLEGSVIRIRPSMVKFSTDDMRDLGICGMASEP 629
Query: 505 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNIL 564
P LNRQ++ +L +G+ D+ F Q + +RQL I + K L+ ++ +
Sbjct: 630 YPLVLNRQIVKILEDIGVPDDWFFGLQNDRLRQLQLISSSADKTATFLKDAKIADSIGLY 689
Query: 565 KELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 619
K C Y+ D PFL +++ +L L+ K+RI +P G ++ G +DET L
Sbjct: 690 KLFRWCYWMDLDYRED--PFLRSIVEAMILRELRLLKHKSRIPVPQGMTLYGIIDETGYL 747
Query: 620 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 679
+VF+ S L+++ G V+V ++P L+ GD++V + V
Sbjct: 748 KENEVFITFDTI--------SGLYAAPPG------PGPVLVTRSPALYDGDIQVARNVVP 793
Query: 680 PALHHMV---DCVVFPQKGMRYILTML 703
P H + +C++F Q+G R + + L
Sbjct: 794 PPDHPLARHKNCIIFSQQGARDLPSQL 820
>gi|398389633|ref|XP_003848277.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339468152|gb|EGP83253.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1234
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 149/461 (32%), Positives = 233/461 (50%), Gaps = 46/461 (9%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
VH+V V P+ + GPE +NRVLR + + D FLR+ F DED + PR
Sbjct: 423 VHKVVVMPTGLRLEGPEPEPTNRVLRRYAKYTDFFLRVEFRDEDGATVR---YDPR---- 475
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-------RYGLTA 372
TD+ R + R + L + ILI R F FL FS S LR S W A RY A
Sbjct: 476 TDLHRV-YHGRFKTVLDSSILISGRAFSFLGFSHSSLRSQSCWFMAPFVFNGSLRY---A 531
Query: 373 AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 432
+ + +G F+ IR AK AAR+GQ+F+ + ++ + +++ + DV+ + FSD
Sbjct: 532 DHVLQDLGEFKMIRTPAKCAARIGQNFTDTNTSVELRPEQVYWLNDVE----RNGRTFSD 587
Query: 433 GIGKVSAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYE 490
G+G +S E + V G + P+ QIR+ G KG+V+ D K L+LR SMRK++
Sbjct: 588 GVGIISMELLQSVWRVYGTRRLLKPTILQIRFQGCKGMVSLDTRLRGKCLALRKSMRKFQ 647
Query: 491 SELT-KLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 548
+E T L++ + + P LNRQ + LGI +F Q+++V +L + +
Sbjct: 648 TETTWDLEICGAAFRPLPMILNRQFTKIFEDLGIPLSVFMDLQQKSVDKLRRMTHSAINT 707
Query: 549 QEAL---ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 605
L E ++++ L G +PFL +++ SKL +++ + RI I +
Sbjct: 708 ANFLDETECTKAARVPSLIRYLGQMGLDYRHDPFLYNVVEMSVVSKLRDIKYRGRIPIDD 767
Query: 606 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
G ++ G +DET L ++FV A L G S L V+ V+V ++P
Sbjct: 768 GVTLYGIMDETGVLKANEIFVVTEKA---PLGGRSVL-----------VRNNVIVTRSPA 813
Query: 666 LHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
+HPGDV+++ AV+VP L + + VVF Q G R + +ML
Sbjct: 814 MHPGDVQIVNAVDVPQGSPLRQLSNVVVFSQHGDRDLPSML 854
>gi|308474534|ref|XP_003099488.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
gi|308266677|gb|EFP10630.1| hypothetical protein CRE_01169 [Caenorhabditis remanei]
Length = 1637
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 161/510 (31%), Positives = 244/510 (47%), Gaps = 98/510 (19%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
+G V ++ TP+RV + PE + NRVLR + RD LRI F D+D K+
Sbjct: 486 EGYQRVRKIIFTPTRVVYVAPETLMGNRVLRRYDRDGCRVLRIMFRDDDNQKMR------ 539
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 374
T+ T T + T + LR+GI + + F +L S+SQ+R+S A+ F +Y ++A+
Sbjct: 540 -----TNKTSTLLETTVHRYLRDGITVAGKNFGYLGSSNSQMRDSGAY-FMEKY--SSAQ 591
Query: 375 IREW----------------------MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 412
RE+ +G F I N+ K ARLGQ F+ S+ + V+++
Sbjct: 592 CREYEEKYKLKPPIDFNPKIQSARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLER 650
Query: 413 IEIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG 468
I + GK +Y FSDG+G +S FA+ V+ L PS FQ R+ G KG
Sbjct: 651 CTYITTFDLTGGKNVKRDEYTFSDGVGLMSHLFAKMVSEVMDLGKGVPSCFQFRFRGMKG 710
Query: 469 VVAADP-------------------TSSKKLS--LRDSMRKYESELTKLDVLAWSKYQ-- 505
V+A +P +S LS R S K+ S+ D + KY
Sbjct: 711 VIAVEPLLDNIRLWCVENNVPEVSEETSWGLSCVFRPSQIKFISKRHPRDQVEIVKYSAP 770
Query: 506 -PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGENT 561
P LN+ I++L D++ E + E R++ + + L Q A +++
Sbjct: 771 VPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLQFAQQMVDETFCR 824
Query: 562 NILKEL----------LICGYKPDAEPFLSMMLQTFRASKLLELRT--KTRIFIPN--GR 607
N LKEL G+ +EPF +++ + K L R K +I IP GR
Sbjct: 825 NRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKA--SIKFLITRQLRKEQIPIPADLGR 882
Query: 608 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 667
SM+G +DET L YGQ+FVQ++ +L ++ R ++ G V++ KNPC+
Sbjct: 883 SMLGVVDETGRLQYGQIFVQLTK--------NLALKIPPKTAARQVLTGTVLLTKNPCIV 934
Query: 668 PGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GDVR+ +AV++P LHHM D VVFPQ G R
Sbjct: 935 AGDVRIYEAVDIPELHHMNDVVVFPQHGPR 964
>gi|358378399|gb|EHK16081.1| hypothetical protein TRIVIDRAFT_10390, partial [Trichoderma virens
Gv29-8]
Length = 1247
Score = 194 bits (493), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 152/477 (31%), Positives = 235/477 (49%), Gaps = 39/477 (8%)
Query: 243 RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 302
R+ P P L + +V +V VTP+R+ GP+ NRVLR F + D F R+ F DE
Sbjct: 411 RTSPYGP--QLPEHQAWVLKVMVTPTRIMLHGPDGENKNRVLRMFPQHSDYFARVIFGDE 468
Query: 303 DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 362
D DL+ S + + I+ R +++GI + RKFEFL FS S LR SAW
Sbjct: 469 D-----GQDLALLPS----VNNSAIFERYRKIMKDGIHVAGRKFEFLGFSHSSLRSHSAW 519
Query: 363 M---FASRYGLTAAE-IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--I 416
F + L + I +G+F +IR AK AAR+GQ+FS + + + I I I
Sbjct: 520 FCAPFVDKMELQNNDSIIRSLGDFSDIRIPAKCAARIGQAFSETPYAVDILKCGIGIKYI 579
Query: 417 PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 476
PDVK GK VFSDG+G +S + ++ + + ++ P+ FQ+R GG KG+++ D
Sbjct: 580 PDVKTADGKR--VFSDGVGTISWDAMEEIWDRLPMNNSAPTCFQVRLGGIKGMLSLDSRL 637
Query: 477 SKKLSL--RDSMRKY-ESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQR 532
K+ ++SM K+ S+ T L + SK LNRQ I +L +G E F +Q
Sbjct: 638 KGKVICIRKESMMKFPSSDQTTLGICDTASKPLRLVLNRQTIKILEDMGTNFEWFIDQQN 697
Query: 533 EAVRQLDAILTDPLKAQEALELMSPGENTN---ILKELLICGYKPDAEPFLSMMLQTFRA 589
+A+ L + LE G N ++K L G + F+ ++
Sbjct: 698 KALDVLRNVTASASNTSTFLESQLVGTNVGFPKLIKYLNKVGIDYRRDKFMKKVVDHTIL 757
Query: 590 SKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR 649
+L L+ K RI + G ++ G +DET L GQ++V +SS +
Sbjct: 758 RELRLLKHKARIPVDQGVTLFGIMDETGFLEEGQIYVTF----------DSSYDKAQGRV 807
Query: 650 QRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD---CVVFPQKGMRYILTML 703
+ + G V++ ++P LHPGD+++ + + P H + D CVVF QKG R + + L
Sbjct: 808 KGSLKDGFVLITRSPALHPGDIQLAQVMTPPHGHPLRDLRNCVVFSQKGSRDLPSQL 864
>gi|346973013|gb|EGY16465.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1310
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 164/573 (28%), Positives = 265/573 (46%), Gaps = 68/573 (11%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFY---------RLVDPYRAPVSISCIEHALDKLY 219
+P+ +LF L N + + DS + R+ PVS A+ LY
Sbjct: 326 VPFRLLFLTQALASNNYLHPHVADSLLFCIRQAFSTARIAQQPHDPVSAE----AMKSLY 381
Query: 220 H--------LKECCYEPSRWLTDQYRKYMTSRSKPSSPAI--SLDDGLVYVHRVQVTPSR 269
++ +P + +K +R + + A + + +V + VTP+R
Sbjct: 382 QDIPYPYPGMEPSDLDPVALMAHLLKKEARTRKEAAMTAFKHTSNKNYAWVFKANVTPTR 441
Query: 270 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 329
+ GP NR+LR F + F+R+ F DE+ D I LS + ++ IY
Sbjct: 442 ITLHGPAYEPMNRILRKFPDHAEYFMRVQFCDENGDDIF---LSAK------VSNDHIYN 492
Query: 330 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFRE 384
R L++GI I R + FL FS S LR SAW F + G + I + +G+F
Sbjct: 493 RFRRVLQSGIQIAGRVYSFLGFSHSSLRSHSAWFSAPFVDKTGQLQSYVNIIKSLGDFEH 552
Query: 385 IRNVAKYAARLGQSFSSSKETLSV--HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 442
IR AK AAR+GQ+FS + ++S+ H + IPDVK VFSDG+G +S +
Sbjct: 553 IRIPAKCAARIGQAFSETTSSVSLVDHGIVCQFIPDVKY----GNRVFSDGVGTISRDAL 608
Query: 443 RKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLR-DSMRKYESELTKLDVL- 499
+ ++ P+ QIR+GG KG+++ D + +++R +SM K+ S T LD L
Sbjct: 609 ETIWPHLPRMESLPTCLQIRWGGVKGMLSLDSRLPGRVMNIRQESMLKFPS--TDLDNLG 666
Query: 500 ---AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS 556
A S+ LNRQ+I +L +G+ DE F Q+ + +L A+ D L+L
Sbjct: 667 ICGAASRPLRMVLNRQMIKILEDMGVRDEWFFSLQKRELERLRAVTADAWNTGAFLQLQG 726
Query: 557 PGEN---TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 613
G + +K L G + FL ++ +L L+ K RI +P G ++ G +
Sbjct: 727 IGSAFYLSTFIKTLDKYGINYRRDDFLRCTVEAVVLRELRLLKHKARIPVPQGVTLFGIM 786
Query: 614 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 673
DET L+ G+V+V S ++ S + G ++V ++P LHPGD++
Sbjct: 787 DETGFLSEGEVYVCY-----------DSRYNGSLPIDSTLSDGNILVTRSPALHPGDIQW 835
Query: 674 LKAVNVPALHHMVD---CVVFPQKGMRYILTML 703
++ P H + D C+VF Q G R + + L
Sbjct: 836 VRMRTPPVGHPLRDLRNCIVFSQHGERDLPSQL 868
>gi|400595821|gb|EJP63611.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1328
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 155/498 (31%), Positives = 239/498 (47%), Gaps = 53/498 (10%)
Query: 252 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 311
S+ +V + VTP+RV GP+ NRVLR F D FLR++F DED +D
Sbjct: 473 SISKQQAWVLKAMVTPTRVILGGPDPESKNRVLRMFHDRTDYFLRVTFTDED-----GSD 527
Query: 312 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SR 367
L+ + D +Y S ++ GI + R+F FL FS S LR SAW A +R
Sbjct: 528 LNFNHRVSNDY----VYDHYRSVMKQGIEVAGRRFSFLGFSHSSLRSHSAWFMAPFVDNR 583
Query: 368 YGLTA-AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIG 424
G A + +G+FREIR AK AAR+GQ+FS + +S+ I I I DV+ +
Sbjct: 584 MGRQDYATVLNSLGDFREIRIPAKCAARIGQAFSETPYAVSLRGSSIVISYIEDVRSYVD 643
Query: 425 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLR 483
+++ VFSDG+G +S + L P+ QIR G KG+++ DP K++ +R
Sbjct: 644 ESR-VFSDGVGTISQGALEEFWDVLPLNLGSPTCVQIRVAGIKGMLSLDPRLLGKQICIR 702
Query: 484 -DSMRKYES----ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 538
+SM K+ S E+ +V A + LNRQ+I +L +G F Q +A+ L
Sbjct: 703 AESMMKFPSRDFVEIGICEVAA--RPLRLVLNRQMIKILEDMGTNRTWFRAMQAKALETL 760
Query: 539 DAILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLEL 595
+ LE G + + ++ + G +PFL +++ +L L
Sbjct: 761 RGVTATAANTCTFLEYQGVGSSIRLPRFIRRMHAHGIDYRGDPFLKGVVEYVVLRELRLL 820
Query: 596 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 655
+ K RI I G ++ G +DET L G++++ R+ G S +V
Sbjct: 821 KHKARIPIEKGVTLFGVMDETGFLKEGEIYIHYD----RRAPGRKDGIEDS------LVD 870
Query: 656 GLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML--------K 704
G VVV ++P LHPGD+++ K V P H + +C+VF Q+G R + + L K
Sbjct: 871 GPVVVTRSPALHPGDIQLAKMVTPPEKHPLRALRNCIVFSQRGGRDLPSQLSGGDLDGDK 930
Query: 705 PRLLWYELNSSHALPRFI 722
++W ALPR +
Sbjct: 931 YNVIW----DGGALPRSV 944
>gi|295668891|ref|XP_002794994.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226285687|gb|EEH41253.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 1142
Score = 193 bits (491), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 172/579 (29%), Positives = 262/579 (45%), Gaps = 126/579 (21%)
Query: 166 GIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECC 225
G LPY ++F++ LV NG ++ P+ +F V+ + + ALDKL +
Sbjct: 315 GGDLPYRVMFQLQKLVWNGAIS-PVNAISFAYRVEKELVDADLDVVVQALDKLERDIQWS 373
Query: 226 YEP---------------SRWLTDQYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSR 269
+ L R+ SRS +P P + +HR QVTP
Sbjct: 374 SPDVQASEVDVVALMKLFANALEIVVREKALSRSNRPIHP------NNILIHRAQVTPCG 427
Query: 270 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 329
+Y GP++ NRVLR + ++D+FLR+ F+DE D + R S + +
Sbjct: 428 IYLYGPQLETKNRVLRIYEANVDHFLRVEFVDESGDPV-------RYDSRASVDAI-FQS 479
Query: 330 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGL-TAAEIREWMGNFREI 385
R L+ GI I RKFEFL FS S LR + W F S L A I + +G F I
Sbjct: 480 RFKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATVIIQNLGRFDHI 539
Query: 386 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 445
+ AK AAR+GQ+FS + ++ + D + + DV+ + +FSDG+G +
Sbjct: 540 HSPAKQAARIGQTFSDTLTSIPISFDMLSVGEDVE----RNGRIFSDGVGTI-------- 587
Query: 446 ASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQ 505
S F I+ S K + +++ EL + K
Sbjct: 588 -----------SPFLIK-------------SMVKFPVPETVGGLNIELCGSGL----KAL 619
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 565
P FLN QLI +L LG+ F K Q + + +L A T P AQ A L E+T+I K
Sbjct: 620 PFFLNAQLIKILEDLGVEQSAFLKLQADEIERLRA--TAPSTAQAARFL----EDTHIAK 673
Query: 566 ELLICGYKPDAEPFLSMMLQTFRAS-----------------KLLELRTKTRIFIPNGRS 608
+ + P+L +L+ FR S KL +L+ + RI +PN +
Sbjct: 674 SIGL--------PWLISILEGFRLSHTDDEFLRRVMELAVLIKLRDLKYRARIRVPNAVT 725
Query: 609 MMGCLDETRTLNYGQVF-VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 667
+ G +DET L G++F V +S G+R++ +V+ VVV ++P +H
Sbjct: 726 LFGIMDETGILKEGEIFCVTLSEDGHREV----------------LVRPRVVVTRSPAMH 769
Query: 668 PGDVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
PGDV+V KAV+VPA L + +C+ F Q G R + +ML
Sbjct: 770 PGDVQVAKAVDVPADSPLRQLHNCIAFSQYGDRDLPSML 808
>gi|341891711|gb|EGT47646.1| CBN-EGO-1 protein [Caenorhabditis brenneri]
Length = 1632
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 153/511 (29%), Positives = 245/511 (47%), Gaps = 96/511 (18%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
+ +G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+
Sbjct: 484 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMR---- 539
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 372
T+ T T + + + L +GI + R F +L S+SQ+R++ A+ F +Y ++
Sbjct: 540 -------TNKTSTLLEKTVNNYLHSGITVAGRNFGYLGSSNSQMRDNGAY-FMEKY--SS 589
Query: 373 AEIREW----------------------MGNFREIRNVAKYAARLGQSFSSSKETLSVHM 410
++ RE+ +G F I N+ K ARLGQ F+ S+ + V++
Sbjct: 590 SQCREYEAIHHVKPPITYNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNL 648
Query: 411 DEIEIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 466
D + + GK +Y FSDG+G +S FA+ V+ PS FQ R+ G
Sbjct: 649 DRCTYMTMYDLTGGKNIKRDEYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSCFQFRFRGM 708
Query: 467 KGVVAADPTSS--KKLSLRDSMRKYESELT----------------------KLDVLAWS 502
KGV+A +P +K SL ++ K ++ +++++ +S
Sbjct: 709 KGVIAVEPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQVEIVKYS 768
Query: 503 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT- 561
P LN+ I++L D++ E + E R++ + + L Q L + T
Sbjct: 769 SPVPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLLFAQQMVDETF 822
Query: 562 --NILKEL----------LICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--G 606
N LKEL G+ +EPF S++ + + S +LR K +I IP G
Sbjct: 823 CRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLR-KEQIPIPQDLG 881
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
RSM+G +DET L YGQ+FVQ + +L ++ R ++ G V++ KNPC+
Sbjct: 882 RSMLGVVDETGRLQYGQIFVQYTK--------NLALKLPPKNAARQVLTGTVLLTKNPCI 933
Query: 667 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GDVR+ +AV++P LHHM D VVFPQ G R
Sbjct: 934 VAGDVRIFEAVDIPELHHMCDVVVFPQHGPR 964
>gi|358397216|gb|EHK46591.1| hypothetical protein TRIATDRAFT_317554 [Trichoderma atroviride IMI
206040]
Length = 1395
Score = 192 bits (488), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 176/609 (28%), Positives = 268/609 (44%), Gaps = 81/609 (13%)
Query: 136 YKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNG----CVAGPLL 191
Y S RF GSA S L LP+ ILF++ LV N +A LL
Sbjct: 427 YTTSMSRFEGSIGSAGSGRTKL-----------LPFAILFQVQALVWNNYLHPAIATKLL 475
Query: 192 DSNFYRLVDPYRAPVSISCIEHALDKLYH------------------LKECCYEPSRWL- 232
D R+ + A+ +LY L E R L
Sbjct: 476 HLMTSVARDCKRSGTPLPFTTDAMKQLYQKIPYPCPGTEPQDLFEGELASIVVEAERALR 535
Query: 233 -TDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI 291
DQ R P A ++ + VTP+R+ GP+ NRVLR F
Sbjct: 536 NEDQKRTLHYGAQLPRHQA--------WILKAMVTPTRITLHGPDAESMNRVLRMFPNHS 587
Query: 292 DNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF 351
D F+R+ F DED + T +++ T ++ R L++GI + RKFEFL F
Sbjct: 588 DYFMRVIFGDEDGQDLALT---------SNVKNTLVFERYRKILKDGIQVAGRKFEFLGF 638
Query: 352 SSSQLRESSAWMFA-----SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 406
S S LR SAW A S I + +G+F +IR AK AAR+GQ+FS + +
Sbjct: 639 SHSSLRSHSAWFVAAFVDDSMNLQNNDTIIKSLGDFSDIRIAAKCAARIGQAFSETPYAV 698
Query: 407 SVHM--DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYG 464
+ IE I DVK GK VFSDG+G +S + +V + + Q+R G
Sbjct: 699 PILKCGINIEYIDDVKTADGKR--VFSDGVGTISWDAMEEVWDHLPKASSEATCVQVRLG 756
Query: 465 GYKGVVAADPTSSKKLSL--RDSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTL 520
G KG+++ D + K+ ++SM K+ S + T++ + SK +LNRQ I +L +
Sbjct: 757 GIKGMLSLDSRLNGKVICVRKESMMKFPSKDQTEMGICDTASKPMRTYLNRQTIKILEDM 816
Query: 521 GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN---ILKELLICGYKPDAE 577
G E F +Q +A+ L + T L+ G +++ L G E
Sbjct: 817 GTNSEWFIDQQNKALNVLRNVTTTAANTSTFLKNQMVGTTAGLPRLIRYLSTIGIDYRRE 876
Query: 578 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 637
F+ ++ +L L+ K RI + G ++ G +DET L GQ++V + + + L
Sbjct: 877 RFMKKVVDHTILRELRLLKHKARIPVDMGVTLFGVMDETGFLEEGQIYVTFNES-HDHLQ 935
Query: 638 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQK 694
G +R + G V+V ++P LHPGD+++ + P H ++ +CVVF QK
Sbjct: 936 GRV---------KRSLKDGTVLVTRSPALHPGDIQLARMTTPPQGHPLRNLKNCVVFSQK 986
Query: 695 GMRYILTML 703
G R + + L
Sbjct: 987 GSRDLPSQL 995
>gi|380493792|emb|CCF33621.1| RNA dependent RNA polymerase, partial [Colletotrichum higginsianum]
Length = 1278
Score = 192 bits (488), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 148/478 (30%), Positives = 237/478 (49%), Gaps = 38/478 (7%)
Query: 243 RSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 302
RS P + LV+ + VTP+R+ GPE NR+LR F F+R++F DE
Sbjct: 428 RSALLEPNMGNHHALVF--KAMVTPTRITLHGPEPEPMNRILRRFPNQTSYFIRVTFCDE 485
Query: 303 DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 362
D + +PR ++ +I+ R L GI I R ++FL FS S LR SAW
Sbjct: 486 DGGDLF---FNPR------VSYDQIFDRYREVLNGGIPIAGRIYQFLGFSHSSLRSHSAW 536
Query: 363 M---FASRYGLTA--AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI-- 415
F G I + +G+F I AK AAR+GQ+FS + + + + I
Sbjct: 537 FSAPFVDDGGKLQLYGNIIKALGDFEHIEIPAKCAARIGQAFSETPTFIKLAENRIRHSN 596
Query: 416 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT 475
IPDVK + G + VFSDG+G +S + V + P+ QIR+GG KG+++ D
Sbjct: 597 IPDVKSQDGDIERVFSDGVGTISQDVLELVWPRLPRGSLIPTCLQIRWGGVKGMLSLDSR 656
Query: 476 SSKKLSL--RDSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 531
+ R+SM K+ S ++ L++ A S+ LNRQ+I ++ LG+ +F + Q
Sbjct: 657 LMGRTICVRRESMEKFPSNDVENLEICDAASRPLKLVLNRQMIKIMEDLGVDSNLFLQLQ 716
Query: 532 REAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFR 588
++ V +L A+ D L L G +++K L G + FL ++++
Sbjct: 717 KKEVDRLRAVTADAYNTGTFLHLQGVGSTFFLPSLIKSLKNYGIDYRRDSFLRAVVESTV 776
Query: 589 ASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS 648
+L L+ K RI +P G ++ G +DET L G+V+V Y++ G+S + +S R
Sbjct: 777 LQELRLLKHKARIPVPEGATLFGIMDETGFLREGEVYVCYD--TYKR-PGKSPMKNSLRD 833
Query: 649 RQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
G V+V ++P LHPGD++ + P H ++ +C+ F Q+G R + +ML
Sbjct: 834 -------GPVLVTRSPALHPGDIQYVNMRTPPPGHPLRNLRNCIAFSQRGHRDLPSML 884
>gi|308476844|ref|XP_003100637.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
gi|308264655|gb|EFP08608.1| hypothetical protein CRE_20435 [Caenorhabditis remanei]
Length = 1685
Score = 191 bits (486), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 154/508 (30%), Positives = 246/508 (48%), Gaps = 90/508 (17%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
+ +G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+
Sbjct: 538 MREGYQRVRKIVFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMR---- 593
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM--------- 363
T+ T + + + LR+GI + R F +L S+SQ+R++ A+
Sbjct: 594 -------TNKTSMLLDKTVHTYLRDGITVAGRDFGYLGSSNSQMRDNGAYFMEKYSSSQC 646
Query: 364 --FASRYGLTA--------AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI 413
+ SR G+ R+ +G F I N+ K ARLGQ F+ S+ + V+++
Sbjct: 647 REYQSRTGVKPPIDFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNLERC 705
Query: 414 EIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV 469
+ + GK +Y FSDG+G +S FA+ V+ PS FQ R+ G KGV
Sbjct: 706 TYMTTYDLTGGKNVKRDEYTFSDGVGMMSHHFAQMVSHVMDFGKGVPSCFQFRFRGMKGV 765
Query: 470 VAADP---------------TSSKKLS------LRDSMRKYESEL---TKLDVLAWSKYQ 505
+A +P +S++ S R S K+ S+ +++++ +S
Sbjct: 766 IAVEPLLDNIRQWFLENGIPEASEETSWNLNCVFRPSQIKFISKRHPRDQVEIVKYSSPV 825
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGENTN 562
P LN+ I++L D++ E + E R++ + + L Q A +++ N
Sbjct: 826 PVALNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMVDETFCRN 879
Query: 563 ILKEL----------LICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--GRSM 609
LKEL G+ +EPF S++ + + S +LR K +I IP+ GRSM
Sbjct: 880 RLKELPRRIDIDYLRTSWGFTLSSEPFFRSLIKASIKFSITRQLR-KEQIPIPSELGRSM 938
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 669
+G +DET L YGQ+FVQ + +L ++ R ++ G V++ KNPC+ G
Sbjct: 939 LGVVDETGRLQYGQIFVQYTK--------NLALKLPPKNAAREVLTGTVLLTKNPCIVAG 990
Query: 670 DVRVLKAVNVPALHHMVDCVVFPQKGMR 697
DVRV +AV++P LHHM D VVFPQ G R
Sbjct: 991 DVRVFEAVDIPELHHMCDVVVFPQHGPR 1018
>gi|308476834|ref|XP_003100632.1| CRE-RRF-1 protein [Caenorhabditis remanei]
gi|308264650|gb|EFP08603.1| CRE-RRF-1 protein [Caenorhabditis remanei]
Length = 1680
Score = 191 bits (485), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 172/606 (28%), Positives = 274/606 (45%), Gaps = 105/606 (17%)
Query: 171 YEILFKINLLVQNGCVAGP--LLD----SNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 224
+ I + I L+ G V LLD SNF ++ Y C E AL+ L H+ +
Sbjct: 418 FAITYLIECLISRGAVVKDQILLDEGQWSNFLEIIIHYYKIDDKLC-EAALEDLIHMVDG 476
Query: 225 ---------CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 275
C++ Q R+ M + + I DG V ++ TP+RV + P
Sbjct: 477 RKRIGSILKCFD----RICQKRQQMNLVNGLTENEIR--DGFQRVRKIVFTPTRVIYIAP 530
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTL 335
E + NRVLR F +D +R++F D+ ++ + S G D T + ++
Sbjct: 531 ETIMGNRVLRRFDKDGTRVIRVTFRDDSNGRLRA---STTGEELIDKTAMKFFSE----- 582
Query: 336 RNGILIGDRKFEFLAFSSSQLRESSAWM-----FASRYGLTAA--------------EIR 376
G+ + +R + FL S+SQ+R++ A+ F R L E+R
Sbjct: 583 --GVKVANRDYGFLGCSNSQMRDNGAYFMEKSTFGQRQRLLKNNPNANLIGFQPKILEVR 640
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK------YVF 430
+G F I NV K ARLGQ F+ S+ T V ++ + E KTK Y +
Sbjct: 641 RHLGRFETIENVPKMMARLGQCFTQSRLT-GVELERSDYCTTFDYEGAKTKPIVGKCYTY 699
Query: 431 SDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK------------ 478
SDG+G +S FA+++A + PS QIR+ G KGV+A DP +
Sbjct: 700 SDGVGIMSYGFAQRLARSMNFGISVPSCLQIRFRGMKGVIAIDPFYDEVSEWAQANGIQS 759
Query: 479 --------KLSLRDSMRKYESELTKLDVLAWSKYQP---CFLNRQLISLLSTL------- 520
K R S K+ ++ D + K+ LN+ I++L +
Sbjct: 760 YDVPNLDLKCQFRPSQIKFPAKSIPGDQIEMVKFSSPVLVALNKPFINILDQVSEMQSIE 819
Query: 521 ------GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKP 574
G +E+ +++ +Q++ D L + L+ + + LK + G+
Sbjct: 820 CHRRVTGRIEELMDRQIVSFAKQMN----DELYCRNKLKEFPRRIDIDFLKRMW--GFTL 873
Query: 575 DAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGA 631
EPF S++ + + S +LR K +I IP GRSM+G +DET L YGQ+FVQ +
Sbjct: 874 CNEPFFRSLIKASIKFSITKQLR-KEQIQIPKELGRSMLGIVDETGRLQYGQIFVQYTRN 932
Query: 632 GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 691
+L S++ + + +V G V++ KNPC+ GDVR+ +AV++P LHH+ D VVF
Sbjct: 933 SNEKLPPRSNM-QHMKVQGSQVVTGTVLLTKNPCIVTGDVRIFEAVDIPELHHLCDVVVF 991
Query: 692 PQKGMR 697
PQ G R
Sbjct: 992 PQHGPR 997
>gi|171683804|ref|XP_001906844.1| hypothetical protein [Podospora anserina S mat+]
gi|170941862|emb|CAP67515.1| unnamed protein product [Podospora anserina S mat+]
Length = 1230
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 140/459 (30%), Positives = 228/459 (49%), Gaps = 42/459 (9%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
+ RV ++P R+ GPE+ NR+LR F + F R+ DE+ DL + +
Sbjct: 443 IFRVSISPMRITLHGPELETKNRILRKFDGKANFFFRVQLCDEN-----GQDLLFNPTIS 497
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR--- 376
D +Y+R S LR GI + R+++FL FS S LR S W A Y +I
Sbjct: 498 LDT----VYSRFKSILRKGIAVAGRQYKFLGFSHSSLRAHSLWFSAPFYHEGKLQIPEHI 553
Query: 377 -EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDG 433
E +G+F IR+ A+ AAR+GQ+F+ + ++S+ + ++ IPDV+ + VFSDG
Sbjct: 554 IEQLGDFAPIRSPARCAARIGQAFTETPYSVSLVDNGVQTSEIPDVE----RNGRVFSDG 609
Query: 434 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES- 491
+G +S + A + P+ FQIR+ G KG+++ D ++ +R SM+K+ES
Sbjct: 610 VGVLSPQAAEAIHDAIPESKGEPTCFQIRWAGAKGMLSLDTELEGSQICIRPSMKKFESP 669
Query: 492 ELTKLDVLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
+ LD+ SK P LNRQ+I +L + F + QR+ V L AI
Sbjct: 670 DEANLDICDMASKPIPMMLNRQMIKILEDMDAPPWWFLELQRKEVNHLRAITRTVSSTAS 729
Query: 551 ALELMSPGENT---NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 607
L + GE+ ++L++ G + FL +++ ++ ++ K RI +P G
Sbjct: 730 FLAMKDIGESIRLPHLLRQTEAMGVDYHQDLFLRSVVEMALLKEIKLIKHKARIPVPKGI 789
Query: 608 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 667
++ G +DET L GQV+V R + Q+ VV+ ++P LH
Sbjct: 790 TLFGVMDETGFLQEGQVYVSFDTMQGR--------YHEPPECQK------VVITRSPALH 835
Query: 668 PGDVRVLKAVNVPALHHMVD---CVVFPQKGMRYILTML 703
PGD+++ V P H +++ CVVF Q+G R + +ML
Sbjct: 836 PGDIQLAHHVIPPEGHPLLELRNCVVFSQRGDRDLPSML 874
>gi|367053924|ref|XP_003657340.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
gi|347004606|gb|AEO71004.1| hypothetical protein THITE_2147717 [Thielavia terrestris NRRL 8126]
Length = 1241
Score = 191 bits (484), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 164/571 (28%), Positives = 268/571 (46%), Gaps = 63/571 (11%)
Query: 165 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRA---------PVSISCIEHAL 215
DG +LP+ +LF + LV NG + + + +LV + A PVS+ +
Sbjct: 325 DG-SLPFGLLFLLQALVANGYLHPATVSALARKLVALFAAAKPAWRSQPPVSVDAFKQLF 383
Query: 216 DKL-YHLKECCYEPSRWLTDQYRKYMTS-----RSKPSSPAISLDDGLVY--VHRVQVTP 267
+ Y +P+ + D +Y+ R ++ A DD + + R VTP
Sbjct: 384 QWIDYPTPPPNGDPNMFSVDGIMEYLQGAERLVREGSATRAAIFDDAPIRARIFRATVTP 443
Query: 268 SRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 327
+R+ GPE+ NRVLR F D F+R F DE+ DL + D +
Sbjct: 444 TRITLHGPELEPMNRVLRKFS-DHSYFIRAQFCDEN-----GQDLFFNAKVSLDA----V 493
Query: 328 YTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW----MGNFR 383
+ R S L +GI + R ++ L FS S LR SAW+ A +I + +G+F
Sbjct: 494 FDRFKSVLTDGIQVAGRVYKLLGFSHSSLRAHSAWLSAPFIHEGRVQIPDLIITGLGDFN 553
Query: 384 EIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDGIGKVSAEF 441
I++ A+ AAR+GQ+FS + + + + I++ +PDV+ + VFSDG+G +SA
Sbjct: 554 RIQSPARRAARIGQAFSETPYAVDLDENMIQVLEVPDVE----RNGRVFSDGVGTISAGA 609
Query: 442 ARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLA 500
A V + P+ FQIR+ G KG+++ DP K+ +R SM K+ES +L++
Sbjct: 610 ADAVYNVIPKSKGYPTCFQIRWAGAKGMLSLDPRLEGNKICIRPSMVKFESNDRQLEICD 669
Query: 501 W-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 559
S+ P LN QLI +L +G D+ F + Q +++L A+ + G+
Sbjct: 670 MASRPIPMVLNHQLIKILEDMGAPDKWFLELQNRELQRLRAVTATVCNTASFVRAKKIGQ 729
Query: 560 NTNILKELL---ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 616
+ + K LL G + FL ++ ++L L+ K RI +P G ++ G +DET
Sbjct: 730 SIQLHKLLLQTEAMGLDYWQDDFLRTAVEAIVLNELRLLKHKARIPVPKGITLFGIMDET 789
Query: 617 RTLNYGQVFVQISGAG-YRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 675
L+ G+V+V Y Q G G V+VA++P LHPGD++V
Sbjct: 790 GFLDEGEVYVTYDAEDRYCQPPGP----------------GPVIVARSPALHPGDIQVAY 833
Query: 676 AVNVPALHHMV---DCVVFPQKGMRYILTML 703
P H ++ +C++F G R + + L
Sbjct: 834 NRIPPDGHPLIQQRNCLIFSSWGDRDLPSQL 864
>gi|17506499|ref|NP_492132.1| Protein EGO-1 [Caenorhabditis elegans]
gi|8886068|gb|AAF80367.1| RNA-directed RNA polymerase related EGO-1 [Caenorhabditis elegans]
gi|14530420|emb|CAB01701.2| Protein EGO-1 [Caenorhabditis elegans]
Length = 1632
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 154/511 (30%), Positives = 247/511 (48%), Gaps = 96/511 (18%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
+ +G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+
Sbjct: 484 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMR---- 539
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 372
T+ T T + + L+NGI + R F +L S+SQ+R++ A+ F +Y ++
Sbjct: 540 -------TNKTSTMLEKTVNQYLKNGITVAGRNFGYLGSSNSQMRDNGAY-FMEKY--SS 589
Query: 373 AEIREW----------------------MGNFREIRNVAKYAARLGQSFSSSKETLSVHM 410
++ RE+ +G F I N+ K ARLGQ F+ S+ + V++
Sbjct: 590 SQCREYERIYQIKPPITFNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNL 648
Query: 411 DEIEIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 466
+ + + GK +Y FSDG+G +S FA+ V+ PS FQ R+ G
Sbjct: 649 ERCTYMTTYDLTGGKNLKGDEYTFSDGVGMMSYRFAQMVSEVMDFGKGVPSCFQFRFRGM 708
Query: 467 KGVVAADP-------------------TSSKKLS--LRDSMRKYESEL---TKLDVLAWS 502
KGV++ +P SS L+ R S K+ S+ +++++ +S
Sbjct: 709 KGVISIEPLLDNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYS 768
Query: 503 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGE 559
P LN+ I++L D++ E + E R++ + + L Q A +++
Sbjct: 769 SPVPVALNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLSFAQQMVDETF 822
Query: 560 NTNILKEL----------LICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--G 606
N LKEL G+ +EPF S++ + + S +LR K +I IP G
Sbjct: 823 CRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITRQLR-KEQIPIPCDLG 881
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
RSM+G +DET L YGQ+FVQ + +L ++ R ++ G V++ KNPC+
Sbjct: 882 RSMLGVVDETGRLQYGQIFVQYTK--------NLALKLPPKNAARQVLTGTVLLTKNPCI 933
Query: 667 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GDVR+ +AV++P LHHM D VVFPQ G R
Sbjct: 934 VAGDVRIFEAVDIPELHHMCDVVVFPQHGPR 964
>gi|290989465|ref|XP_002677358.1| predicted protein [Naegleria gruberi]
gi|284090965|gb|EFC44614.1| predicted protein [Naegleria gruberi]
Length = 913
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 156/509 (30%), Positives = 254/509 (49%), Gaps = 66/509 (12%)
Query: 228 PSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF 287
PS + T ++K+ R S + +DD + + +V +TP+ + + + NRVLR +
Sbjct: 280 PSEFTT-LFKKHSHKRQHKS--FVKVDDNMFEIRKVMITPTGIKYFPKILESGNRVLRKY 336
Query: 288 RRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFE 347
++ D FLR++F DE L+++ + + T ++ R+ L NG IG+R +E
Sbjct: 337 KQYEDRFLRVTFCDEGLNRVSAEKV------------TNMHPRLEEFLNNGFTIGNRHYE 384
Query: 348 FLAFSSSQLRESSAWMFASR--YGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
LA+S+SQLR S W + L+ + I E +G+F +I+ +AKYAAR+GQ FS++
Sbjct: 385 MLAYSNSQLRSHSCWFLNTEGIRELSVSSIIEGLGDFSDIKVMAKYAARIGQCFSNTFNG 444
Query: 406 LSVHMDEIEIIPDVKIE-IGKTK-YVFSDGIGKVSAEFARKVASKCGL----KDNPPSAF 459
+ E+ I +IE G K V +DG G++S FA +V+ + + K PSA
Sbjct: 445 IKSEFIEVNDIVYREIERNGDIKENVLNDGCGRMSVSFAEQVSKQMKIRIHGKAYIPSAL 504
Query: 460 QIRYGGYKGVVAADPTSS----KKLSLRDSMRKYESELT-KLDVLAWSKYQPCF--LNRQ 512
Q R GGYKGVV D + K L L S K++ E + + +++A+SK +P F LNRQ
Sbjct: 505 QFRLGGYKGVVVQDKDVADIFGKDLVLTKSQNKFKDEKSDEFEMVAFSK-RPKFSSLNRQ 563
Query: 513 LISLLSTLGIWDEIFEK-------------KQREAVRQLDAILTDPLKAQEALELMSPGE 559
+I LLS+ G+ D K ++ ++R+L + + + +++S E
Sbjct: 564 IIILLSSNGLPDSALMKFVDREIETWRSRTTKKLSIRKLLRKVWENVVGSNIKKVIS-SE 622
Query: 560 NTNILKELLICGYKP----------DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
++ ++L K + +P L + ++ L KT + + +
Sbjct: 623 YLDLKAQVLASQVKGMSQQHVEYFYNVDPLLCTLCDKILINQFSSL--KTNLPVDKCSLL 680
Query: 610 MGCLDETRTLNYGQVFVQISG-AGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
MG +D L +VFVQ+S Y E L+ + IV G V V +NPCLHP
Sbjct: 681 MGVVDFYGVLEDDEVFVQLSSFESY-----ERDLYDPGSYAEGGIVSGNVFVTRNPCLHP 735
Query: 669 GDVRVLKAVN---VPALHHMVDCVVFPQK 694
GDVR KAV+ + L H+ D +VF QK
Sbjct: 736 GDVRKFKAVSDDRINVLKHLKDVIVFSQK 764
>gi|325095101|gb|EGC48411.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1209
Score = 190 bits (482), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 169/577 (29%), Positives = 261/577 (45%), Gaps = 116/577 (20%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
+PY + F++ LV NG ++ P +F V RA + I ++ + L L P
Sbjct: 321 MPYRVRFQLQKLVWNGDIS-PAKAISFASRV---RAALVIEDLDIVVRALMRLSSDVKWP 376
Query: 229 SR----------WLTDQYR---------KYMTSRSKPSSPAISLDDGLVYVHRVQVTPSR 269
S L + ++ + MT ++P P + +HR Q+TP
Sbjct: 377 SPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMHP------NHISIHRAQITPCG 430
Query: 270 VYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYT 329
Y GP NRVLRH+ +D+FLR+ F+DE D + PR S D+ +
Sbjct: 431 TYLDGPHAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS--IDMI---FES 482
Query: 330 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREI 385
R + L++GI I RKFEFL FS S LR + W A Y A+ I + +G F I
Sbjct: 483 RFKTVLKSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDHI 542
Query: 386 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 445
++ AK AR+GQ+FS + ++ + I I DV+ + VFSDG+G
Sbjct: 543 QSPAKQVARIGQTFSDTLTSIPISDKYISIGKDVE----RNGRVFSDGVGA--------- 589
Query: 446 ASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE--SELTKLDVLAWS 502
KG+++ D K L LR SM K+ + ++
Sbjct: 590 ---------------------KGMISLDSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICG 628
Query: 503 ---KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 559
K P FLN QLI +L LG+ D +F + Q + + +L A T KA L E
Sbjct: 629 SGLKPLPFFLNAQLIKILEDLGVDDSVFLRLQADEISRLRATATSTAKAARFL------E 682
Query: 560 NTNILKELLI---------CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
+TNI K + + G + + FL +++ KL +L+ + RI +PN ++
Sbjct: 683 DTNIAKSVGLPWLINILEGFGLRHSNDEFLRRVMELAVLIKLRDLKYRARIRVPNAVTLF 742
Query: 611 GCLDETRTLNYGQVF-VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 669
G +DET L G+VF +S G R++ +V VVV ++P +HPG
Sbjct: 743 GIMDETGILKEGEVFCTSLSDKGVREV----------------LVNPRVVVTRSPAMHPG 786
Query: 670 DVRVLKAVNVPA---LHHMVDCVVFPQKGMRYILTML 703
DV++ +AV+VPA L + +C+ F Q G R + +ML
Sbjct: 787 DVQIARAVDVPADSPLRQLHNCIAFSQHGHRDLPSML 823
>gi|429963046|gb|ELA42590.1| hypothetical protein VICG_00342 [Vittaforma corneae ATCC 50505]
Length = 2092
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 157/544 (28%), Positives = 247/544 (45%), Gaps = 99/544 (18%)
Query: 220 HLKECCYEPSRWLTDQYRKY---MTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPE 276
+L + C R L ++R + +K +I + V + +TP V F
Sbjct: 793 YLPKYCESLDRTLNTRFRPINFRVNIGTKDVKNSIVGNKNRVMIRIAILTPLSVIFNYET 852
Query: 277 INVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR 336
+ SNRVL +F D D F ++ +E+ DL+ D R +
Sbjct: 853 TSESNRVLNNF--DPDKFCKVVIREENGKDRFMADLAKNTDGVYDYFR--------RVML 902
Query: 337 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYG-----LTAAEIREWMGNFREIRNVAKY 391
NG +IG RK+ FLA ++SQL+ +W F + Y + A I+ W+GNF +I+N+ KY
Sbjct: 903 NGFVIGLRKYFFLAMTTSQLKIHGSW-FITPYEHDDMVIGADYIKSWIGNFHKIKNIGKY 961
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 451
A R+G + SS+ T + D +E+ +I K Y F+DGIG ++ ++A +++ GL
Sbjct: 962 AIRIGLALSSTTPTYPFN-DFVEV-----DDIQKNSYCFTDGIGLITKKWAHNISNILGL 1015
Query: 452 KDNPPSAFQIRYGGYKGVVAADP-----------------------------------TS 476
PSAFQIR+GGYKGV+A P TS
Sbjct: 1016 -GFIPSAFQIRFGGYKGVIAVHPWMDEQKNFEEWLTVNSNIVRGYGKYSNINSLLYSNTS 1074
Query: 477 SK-------------------KLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLL 517
S L +R SM K++S L+++A SK +LNRQ+I +L
Sbjct: 1075 SNDAVNSFHQIVASFKQLGTPDLIVRKSMNKFDSSYRTLEIIAVSKSSSFYLNRQIILIL 1134
Query: 518 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE 577
LG+ +IF Q + ++ + + L +Q+ + NT + + Y+
Sbjct: 1135 EGLGVPIQIFIDLQDKYIQNMLSKL-----SQDFTLFIKKYVNTTMNISTDLPFYRKLQS 1189
Query: 578 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 637
P LS + + EL TK++I I GRS +G LDE L Q+F Q
Sbjct: 1190 PILSKVFE--------ELNTKSKILIGQGRSAIGVLDELGILEEDQIFCMF------QKD 1235
Query: 638 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+ S+ + + +VAKNP +HPGD+RV+K V+ P LH++ + +VF +KG R
Sbjct: 1236 VDESMENLKDYGSYIVPNCYCIVAKNPVMHPGDIRVVKCVDAPKLHYLKNVIVFSKKGSR 1295
Query: 698 YILT 701
I
Sbjct: 1296 PIFN 1299
>gi|111610628|gb|ABH11712.1| RNA-dependent RNA polymerase [Tetrahymena thermophila]
Length = 1434
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 152/493 (30%), Positives = 234/493 (47%), Gaps = 80/493 (16%)
Query: 254 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 313
D ++ RV +TPS + + E+ +SNRVLR F+ D+F+R +F D+ L+
Sbjct: 541 DVKVIATRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLENAKHMKYV 600
Query: 314 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF--SSSQLRESSAWMFASRYGLT 371
+R + + L + + +L +EF+ F S+SQLR SS+W F L
Sbjct: 601 -----------SRYFRQKLKSFK--VL----NWEFINFGWSASQLRNSSSWFFHETEVLK 643
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI-----EIG-- 424
++ +G+F I AK +AR+GQ FSSS + IE I D+ E+
Sbjct: 644 KQDVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVDAN 703
Query: 425 -------KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 477
+ K VF+DGIG +S + RK++ L A Q+RYGG KGV+ D S
Sbjct: 704 GNICYFRQKKKVFTDGIGTISQDLIRKISD--HLNAFFMCAIQVRYGGAKGVLTIDYKSD 761
Query: 478 KK--LSLRDSMRKY----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 531
KK + LR+SM KY E + +D+L +KY+ +LNRQ+I LL +LGI +E F + Q
Sbjct: 762 KKNTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVIILLRSLGIENEQFIQAQ 821
Query: 532 REAVRQLDAILTDPLKAQEALELMSPGEN---------TNILKELLICGYKPDAEPFLSM 582
+E + +L+ LK L + + T++L+ + + F
Sbjct: 822 QEYIEELNK---SALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKG 878
Query: 583 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL 642
++ T + LR K+ IF+ +MG +DE L +VF IS E S
Sbjct: 879 VIHTLKKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQ------DSEKSF 932
Query: 643 FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH------------MVDCVV 690
F V+G V+V KNPCLHPGD+R LKAV + + + + ++
Sbjct: 933 FQ---------VEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILI 983
Query: 691 FPQKGMRYILTML 703
FPQKG I + +
Sbjct: 984 FPQKGKEPITSQI 996
>gi|118386404|ref|XP_001026321.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila]
gi|89308088|gb|EAS06076.1| RNA dependent RNA polymerase family protein [Tetrahymena thermophila
SB210]
Length = 1439
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 152/493 (30%), Positives = 234/493 (47%), Gaps = 80/493 (16%)
Query: 254 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 313
D ++ RV +TPS + + E+ +SNRVLR F+ D+F+R +F D+ L+
Sbjct: 546 DVKVIATRRVSITPSGLIYNLKELELSNRVLRIFQDSTDSFIRGTFQDDSLENAKHMKYV 605
Query: 314 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF--SSSQLRESSAWMFASRYGLT 371
+R + + L + + +L +EF+ F S+SQLR SS+W F L
Sbjct: 606 -----------SRYFRQKLKSFK--VL----NWEFINFGWSASQLRNSSSWFFHETEVLK 648
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI-----EIG-- 424
++ +G+F I AK +AR+GQ FSSS + IE I D+ E+
Sbjct: 649 KQDVITRIGDFSGINPPAKKSARIGQCFSSSTPYILKERPNIEFIDDITTPSAVQEVDAN 708
Query: 425 -------KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 477
+ K VF+DGIG +S + RK++ L A Q+RYGG KGV+ D S
Sbjct: 709 GNICYFRQKKKVFTDGIGTISQDLIRKISD--HLNAFFMCAIQVRYGGAKGVLTIDYKSD 766
Query: 478 KK--LSLRDSMRKY----ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 531
KK + LR+SM KY E + +D+L +KY+ +LNRQ+I LL +LGI +E F + Q
Sbjct: 767 KKNTIQLRESMIKYKITDEQDELIIDILDRNKYRFGYLNRQVIILLRSLGIENEQFIQAQ 826
Query: 532 REAVRQLDAILTDPLKAQEALELMSPGEN---------TNILKELLICGYKPDAEPFLSM 582
+E + +L+ LK L + + T++L+ + + F
Sbjct: 827 QEYIEELNK---SALKDASIFTLFNTDYSKDGTRLFPITHLLRSMQTSRIDMAQDIFCKG 883
Query: 583 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL 642
++ T + LR K+ IF+ +MG +DE L +VF IS E S
Sbjct: 884 VIHTLKKRGFYILRKKSNIFLKKSARLMGVIDEYNVLEQDEVFAYISQ------DSEKSF 937
Query: 643 FSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH------------MVDCVV 690
F V+G V+V KNPCLHPGD+R LKAV + + + + ++
Sbjct: 938 FQ---------VEGDVIVVKNPCLHPGDIRKLKAVTLETISQRLGEGKINPFKKLRNILI 988
Query: 691 FPQKGMRYILTML 703
FPQKG I + +
Sbjct: 989 FPQKGKEPITSQI 1001
>gi|154272513|ref|XP_001537109.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150409096|gb|EDN04552.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 1209
Score = 190 bits (482), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 166/571 (29%), Positives = 262/571 (45%), Gaps = 104/571 (18%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
+PY + F++ LV NG ++ P +F V RA + I ++ + L L P
Sbjct: 321 MPYRVRFQLQKLVWNGDIS-PAKAISFASRV---RATLVIEDLDIVVRALMRLSSDVKWP 376
Query: 229 SR----------WLTDQYRKYMTSRSKPSSPAIS---LDDGLVYVHRVQVTPSRVYFCGP 275
S L + ++ + S ++ S ++ + +HR Q+TP Y GP
Sbjct: 377 SPDVEASEVDVPALVEVFKNALESTAREREMTRSNRPMNPNHISIHRAQITPCGTYLDGP 436
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTL 335
NRVLRH+ +D+FLR+ F+DE D + PR S D+ +R + L
Sbjct: 437 HAETKNRVLRHYSSHVDHFLRVEFVDETGDPVR---YDPRAS--IDMI---FESRFKTVL 488
Query: 336 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREWMGNFREIRNVAKY 391
++GI I RKFEFL FS S LR + W A Y A+ I + +G F I++ AK
Sbjct: 489 KSGINIAGRKFEFLGFSHSSLRSQTCWFVAPFYKDRILYNASTIIQNLGRFDHIQSPAKQ 548
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 451
AAR+GQ+FS + ++ + I I DV+ + VFSDG+G
Sbjct: 549 AARIGQTFSDTLTSIPISDKYISIGKDVE----RNGRVFSDGVGA--------------- 589
Query: 452 KDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYE--SELTKLDVLAWS---KYQ 505
KG+++ D K L LR SM K+ + ++ K
Sbjct: 590 ---------------KGMISLDSRKKGKSLVLRPSMIKFHLPNSYNAFNIEICGSGLKPL 634
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 565
P FLN Q+I +L LG+ + +F + Q + + +L A T KA L E+TNI K
Sbjct: 635 PFFLNAQMIKILEDLGVDESVFLRLQADEISRLRATATSTAKAARFL------EDTNIAK 688
Query: 566 ELLI---------CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 616
+ + G + + FL +++ KL +L+ + RI +PN ++ G +DET
Sbjct: 689 SVGLPWLINVLEGFGLRHSNDEFLRRVMELSVLIKLRDLKYRARIRVPNAVTLFGIMDET 748
Query: 617 RTLNYGQVF-VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 675
L G+VF +S G R++ +V VVV ++P +HPGDV++ +
Sbjct: 749 GILKEGEVFCTSLSDKGVREV----------------LVNPRVVVTRSPAMHPGDVQIAR 792
Query: 676 AVNVPA---LHHMVDCVVFPQKGMRYILTML 703
AV+VPA L + +C+ F Q G R + +ML
Sbjct: 793 AVDVPADSPLRQLHNCIAFSQHGHRDLPSML 823
>gi|67524519|ref|XP_660321.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|40743829|gb|EAA63015.1| hypothetical protein AN2717.2 [Aspergillus nidulans FGSC A4]
gi|259486372|tpe|CBF84157.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 1203
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 161/566 (28%), Positives = 267/566 (47%), Gaps = 59/566 (10%)
Query: 168 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVD-------PYRAPVSISCIEHALDKLYH 220
LP+ ILF++ LV NG + ++ +L R P+S++ ++ + L
Sbjct: 285 TLPFGILFQLQALVYNGYLPPNIVLRLTRKLASITKTRKVQGRRPISVNSMKRLFN-LID 343
Query: 221 LKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGL-------VYVHRVQVTPSRVYFC 273
+P + + + +T K S + L ++HRV VTPSR+
Sbjct: 344 WPSPFGDPEEFSIKRLLEVITGNDKDLGEGASEAEALFQPAPHLAHIHRVVVTPSRITLH 403
Query: 274 GPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILS 333
GPE NR+LR F + F+R+ F DE+ + I+ +PR I + I+ R +
Sbjct: 404 GPETEPLNRILRRFPNHHEYFIRVQFCDENGEDIY---FNPR------INNSLIFARFKN 454
Query: 334 TLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAA-----EIREWMGNFREIRNV 388
NG I R + FL FS S LR SAW A + I + +G F EI +
Sbjct: 455 VFANGFQIAGRTYTFLGFSHSSLRSRSAWFSAPFIDDDGSLQSYFTIIKAIGRFSEITSP 514
Query: 389 AKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 446
A+ AAR+GQ+FS + +++ + I + IPDV++ VFSDG+G +SA+ +
Sbjct: 515 ARCAARIGQAFSETPFAVNLKENGIRVLRIPDVQV----GGRVFSDGVGTISAKAVDIIH 570
Query: 447 SKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES-ELTKLDVL-AWSK 503
++ P+ FQIR GG KG+++ DP K+ +R SM K+++ + +++ + SK
Sbjct: 571 GVLPPRNGAPTCFQIRLGGAKGMLSLDPRLRGSKICIRPSMTKFQTDDQVNVEICGSGSK 630
Query: 504 YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI 563
P FLNRQ+I +L +G+ E F Q + QL ++ S + +
Sbjct: 631 PIPLFLNRQVIKILEDMGVDREWFMTLQELRIEQLRKATATTKNTATFVKGQSVADCVKL 690
Query: 564 LKE-LLICGYKPDAE--PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN 620
+ LL K D + PFL +++ +L L+ K RI + G ++ G +DET LN
Sbjct: 691 YRLFLLFHNLKLDYKKIPFLRAVVEAMVLRELRLLKHKARIPVHKGITLYGVMDETGFLN 750
Query: 621 YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 680
+VFV Y+ + ++ + R ++V ++P LH GD++ V P
Sbjct: 751 ENEVFVT-----YQAMDRLAAPPQNCR----------LLVTRSPALHNGDIQYPYNVVPP 795
Query: 681 ALHHMV---DCVVFPQKGMRYILTML 703
H + +C+VF QKG R + + L
Sbjct: 796 KGHPLQQQRNCIVFSQKGTRDLPSQL 821
>gi|340517754|gb|EGR47997.1| predicted protein [Trichoderma reesei QM6a]
Length = 1250
Score = 188 bits (478), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 157/521 (30%), Positives = 245/521 (47%), Gaps = 55/521 (10%)
Query: 233 TDQYRKYM-TSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI 291
T+Q R+ T+R+ P P I D +V + VTP+R+ GP+ +NRVLR F
Sbjct: 406 TEQLRREEDTNRTAPYGPPIP--DSQTWVLKAVVTPTRIMLQGPDAENNNRVLRMFPHHS 463
Query: 292 DNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF 351
D LR+ F DED DL+ S + + I+ R L++GI + RK+EFL F
Sbjct: 464 DYLLRVIFSDED-----GQDLALFPS----VDNSAIFGRYRKVLKDGIQVAGRKYEFLGF 514
Query: 352 SSSQLRESSAWM---FASRYGLTAAE-IREWMGNFREIRNVAKYAARLGQSFSSSKETLS 407
S S LR SAW F L E I +G+F EIR AK AAR+GQ+FS + +
Sbjct: 515 SHSSLRSHSAWFCAPFIDNMQLHNNESIINSLGDFSEIRIPAKCAARIGQAFSETPYAVD 574
Query: 408 VHMDEIEI--IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
+ I I IPDVK G VFSDG G +S + ++ + P+ Q+R GG
Sbjct: 575 ILKCGIGIKYIPDVKTADGSR--VFSDGCGTISWDAIEEIWEHLPMTST-PTCLQVRLGG 631
Query: 466 YKGVVAADPTSSKKLSL--RDSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLG 521
KG+++ D K+ ++SM K+ S + + + +P LNRQ+I +L +G
Sbjct: 632 IKGMLSLDSRLKGKVICIRKESMMKFSSSDQTMLGICDTASKPLRFVLNRQIIKILEDMG 691
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN---ILKELLICGYKPDAEP 578
E F +Q +A+ L + + LE G ++K L G +
Sbjct: 692 TNAEWFIDQQNKALDVLRNVTATAVNTSTFLEYQLVGTTVGLPKLIKYLSKIGVDYRRDN 751
Query: 579 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 638
F+ ++ +L L+ K RI + G ++ G +DET L G+++V Y ++ G
Sbjct: 752 FMKTVVDHTILEELRLLKHKARIPVDQGVTLFGIMDETGFLEEGEIYVTFD-QQYDKVQG 810
Query: 639 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKG 695
+ + GLV++ ++P LHPGD++ + P LH + +CVVF QKG
Sbjct: 811 RV---------KHSLKDGLVLITRSPALHPGDIQPAQMRTPPEGHPLHDLKNCVVFSQKG 861
Query: 696 MRYILTMLK--------------PRLLWYELNSSHALPRFI 722
R + + L PR++ + ++ + PR I
Sbjct: 862 TRDLPSQLSGGDLDGDLYNIFWDPRVIPKQFFTAASYPRVI 902
>gi|409045817|gb|EKM55297.1| hypothetical protein PHACADRAFT_173398 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1215
Score = 187 bits (476), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 163/577 (28%), Positives = 267/577 (46%), Gaps = 74/577 (12%)
Query: 171 YEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH---ALDKLYHLKECCY- 226
+ I F++ L++NG + L FY PV C+ A + L E
Sbjct: 326 WPIAFQLEALLRNGFLNTEDLLERFY-------GPVKQLCVRRPKAAAETLRAFTEAMRG 378
Query: 227 -EPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 285
+P D + K + SR +P A+ L G H V +TP+R+ GP + SNRV+R
Sbjct: 379 RDPRESPEDIFEK-VWSREEPE--AVELSSGNFMCHHVTITPTRMLLEGPYVIQSNRVIR 435
Query: 286 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+R D+F+RI F DED L R TD ++ + R+ L+ G + RK
Sbjct: 436 QYRGYEDHFIRIDFRDED-------RLQYRWDRDTD-GKSLLENRVGGLLKGGFSLATRK 487
Query: 346 FEFLAFSSSQLRESSAWMFASRY----GLTAAE-IREWMGNFREIRNV-AKYAARLGQSF 399
FEFLA+SSS LRE + W Y G AE IR +G+F + N +KYAAR+ Q+F
Sbjct: 488 FEFLAYSSSALREHAVWFVNPFYHQEKGWIDAEYIRSSLGDFSAVINCPSKYAARIAQAF 547
Query: 400 SSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV-ASKCGLKDNP--- 455
+++ ++ + D+ E + D +G+ Y+F+DG+G +S+E + + C +D+
Sbjct: 548 TATDPSVEITRDQWEQMDD----LGEEPYLFTDGVGTISSELGDMIWEALCSARDDSYRK 603
Query: 456 ---PSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES---ELTKLDVL-AWSKYQPC 507
PSA+QIR+ GYKG+VA D K+ LR SM K+E E +++ A+ + C
Sbjct: 604 NIKPSAYQIRFLGYKGMVAVDGRLKGVKMRLRPSMNKFEGPAEETATIEIARAFERPNTC 663
Query: 508 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNIL 564
+LNR LI +L G+ + F + Q AV + ++ ++ S G + + +
Sbjct: 664 YLNRPLIMVLEDRGVIKQAFLELQEAAVAAIHMSSDSVMQCRQLFREHSLGGSYRLSYVW 723
Query: 565 KELLICGYKPDAE---------PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 615
+ L G + E PF ++Q + L ++ RI + ++G DE
Sbjct: 724 QLLNAVGLGMEHEENIRVVLQDPFFERLVQFAKNDVLRSIKHNARIPVLGSYLLVGVADE 783
Query: 616 T---RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 672
VF G Y + S + ++G V ++++P +HPGDV+
Sbjct: 784 GPAYEAEGCENVFKLEEGQIY-------ACVQKSVDEELIWIEGSVTISRSPVVHPGDVQ 836
Query: 673 VLKAVNVPA-------LHHMVDCVVFPQKGMRYILTM 702
+ A+ P ++ + VV P G R + +M
Sbjct: 837 RVTAIGKPPDDGRPCFFRNLKNVVVLPSTGGRSLASM 873
>gi|443899804|dbj|GAC77133.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1455
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 151/477 (31%), Positives = 235/477 (49%), Gaps = 64/477 (13%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGS 317
+V+ V +TP+R+ GP ++ SNRVLR F +F+R++F DED D+ + G
Sbjct: 441 AHVYHVTITPTRMLLDGPFMDASNRVLRMFPDFGSHFVRVAFCDEDGDRFPVSRHDLDGI 500
Query: 318 SATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTA 372
+ R RI L+ GI I RKFE LA+S S L W F + G A
Sbjct: 501 DSESFVRERIG----DPLKYGIAIAGRKFEALAWSGSGLGSHHCWFVTAFTDKVGKLWDA 556
Query: 373 AEIREWMGNFREI-RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV---------KIE 422
IR+ +GNFR I R A+ ARL Q+FS++ ++++ D +EIIPD E
Sbjct: 557 ERIRQALGNFRSIDRYPARLGARLSQAFSATSSSITIENDWVEIIPDELSNAQMPSNGPE 616
Query: 423 IGKTKYVFSDGIGKVSA----EFARKVASKCGLK-------DNP---PSAFQIRYGGYKG 468
+ Y+ +DG+G++S E + G++ +P PSA Q R GG KG
Sbjct: 617 RDRKYYLLTDGVGQISKSLLDEIWHALCETRGMRREWRLSQQDPRRIPSAIQFRCGGAKG 676
Query: 469 VVAADPT-SSKKLSLRDSMRKYES-ELTKLDVLAWS-KYQPCFLNRQLISLLSTLGIWDE 525
V+ +PT KK+ +R+SM K+ + + +L+V A S P LNR LI+ L LG+ D+
Sbjct: 677 VLCLNPTLKGKKMIMRESMIKFSAPKHRELEVAAHSFSPLPARLNRPLINALEDLGVKDD 736
Query: 526 IFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGENTNILKEL-LICGYKPDA---EP 578
+F Q AV +A + + + E + + L + G +PD +
Sbjct: 737 VFLNLQASAVESAQEARKSFKRASQLMGSFAMSDAAEMHKLFRRLDSVIGMRPDELDPDS 796
Query: 579 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 638
L + A+ L +L+ K RI + G +++G +DE L GQ+F Q+
Sbjct: 797 ILHRLCTIVIAAALGDLKRKARIPV-QGCTLIGVVDEFNFLERGQIFAQV---------- 845
Query: 639 ESSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV---DCVVF 691
+ R + F IV+G V+V ++P +HPGDVRV+ AV P H ++ + +VF
Sbjct: 846 ------NDRDQDEFRIVEGKVMVGRSPTIHPGDVRVVSAVKPPPGHPLLQLRNVIVF 896
>gi|384495057|gb|EIE85548.1| hypothetical protein RO3G_10258 [Rhizopus delemar RA 99-880]
Length = 1125
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 175/714 (24%), Positives = 321/714 (44%), Gaps = 71/714 (9%)
Query: 12 NVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGAPRIF 71
N+ ++ + I HL +YRL + Y + + + M+ LI P F
Sbjct: 122 NIRLDVNILEKYIEIFFFHLNAQYRLRIKYNTVLKDTVLQRSNNMST--LIVAAKYPAYF 179
Query: 72 QKGI--RSPDLLYESPVFNFFKEVPDDQWVR--TTD--FTPSNFIGQSTGLCMELPYRLE 125
K I + P Y+ + E+P + ++ TT TP S L Y++E
Sbjct: 180 WKLISHQEPRDYYDFSCWERVNEIPFNSSIKKDTTKNPVTPEKLSADSVNLNSWSVYKVE 239
Query: 126 LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGP----PDGIALPYEILFKINLLV 181
L N +++ E R ++ + +R ++ I D + + F++ ++
Sbjct: 240 L---DINDKTHEDLEQR--IQQATKEARQTQVIQITKEDKHGTDYVNWLPKFTFEVQYML 294
Query: 182 QNGCVAGPL----LDSNFYRLV---DPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTD 234
Q+ L D NFY+ + +PY A +S I +LY +P+ + +
Sbjct: 295 QHTFNLKILREYNTDDNFYQAISNLEPYIACKLLSLISAGQRRLY-------DPNMSINN 347
Query: 235 QYRK--YMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDID 292
+++ Y+T +P + +G Y+ +V +TP+ VY P + N + F+R D
Sbjct: 348 AFKRNPYITDPPEP------IPEGYTYLRKVLITPTSVYPLQPILQKMNHLQYQFQRYSD 401
Query: 293 NFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFS 352
FL I F DE+L I SP + ++Y RI L+ G+++ R +EFL S
Sbjct: 402 RFLLIQFTDEELGPIIP---SPHPNQ-----NDKLYNRIFKVLKRGLMLSGRYYEFLCSS 453
Query: 353 SSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 412
LR+ S W FA L +I W+G+F+EI V KY +GQ + +L + E
Sbjct: 454 LDDLRDHSCWFFAPTDELNRDDIIYWLGDFQEISCVPKYIQSVGQVMAPRLTSLEIKPKE 513
Query: 413 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA- 471
+E I D + ++S GK+S + AR+++S GLK P+ + G +G++
Sbjct: 514 VEEIDDYE----HNGIIYSSECGKMSPQVAREISSLLGLK-YTPNVVKFNLAGARGILML 568
Query: 472 ADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 531
++ +K+ LR + +E L++ SK + +L+R I+LL+ LGI +F++
Sbjct: 569 SNYLQKRKIQLRTGQIHFNTERLTLEINKISKRERAYLDRYSITLLTGLGIHPVVFQQIT 628
Query: 532 REAVRQLDAILTDPLKAQEALELMSPGENTNILK---ELLICGYKPDAEPFLSMMLQTFR 588
E V Q + ++ P K LM + + K +L G+ ++P ++ ++ F+
Sbjct: 629 -EGVLQ-EYLMGGPQKENFLNHLMDEYYSDHFAKCFNRVLCSGFLERSDPLITNLVLAFQ 686
Query: 589 ASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS 648
L E++ T+I+I +G +DET +L +VF Q S S+
Sbjct: 687 NKVLDEIKGNTKIYIQDGARAFAVMDETGSLGENEVFFQTST-------------SAGLD 733
Query: 649 RQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
+ ++ G ++ +N +P DV ++KAV+ P L + +++ R++L +
Sbjct: 734 SELNVIIGKCLIFRNSSCNPNDVMIVKAVDSPKLRSYTNVLIYSAVSSRHLLNI 787
>gi|226490831|ref|NP_001142097.1| uncharacterized protein LOC100274261 [Zea mays]
gi|194707104|gb|ACF87636.1| unknown [Zea mays]
Length = 552
Score = 187 bits (474), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/213 (46%), Positives = 134/213 (62%), Gaps = 3/213 (1%)
Query: 486 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
M K+ES T L+V++W+K+QP FLNRQ+I+LLS+L + D IF + Q + L+ IL+D
Sbjct: 1 MHKFESNHTVLEVVSWTKFQPGFLNRQIITLLSSLNVPDAIFAQMQEAMLSNLNNILSDS 60
Query: 546 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 605
A + + S E +L G P EP L ML R+S+LL L KTRIF+P
Sbjct: 61 DVAFDIV-TASCAEQGTTAALMLSAGISPGTEPHLKAMLLAIRSSQLLGLLEKTRIFVPK 119
Query: 606 GRSMMGCLDETRTLNYGQVFVQISGAGYRQ-LHGESSLFSSSRSRQRFIVQGLVVVAKNP 664
GR +MGCLDE L GQ F++ S L S S++ + I+ G +V+AKNP
Sbjct: 120 GRWLMGCLDELGILEQGQCFIRASSPSLNNCLVKYGSRLSAANTNAETIL-GTIVMAKNP 178
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
CLHPGDVR+L+AV+VP LHH+VDC+VFP+KG R
Sbjct: 179 CLHPGDVRILEAVDVPELHHLVDCLVFPKKGER 211
>gi|299470095|emb|CBN78124.1| RNA-dependent RNA polymerase 1 [Ectocarpus siliculosus]
Length = 1102
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 206/408 (50%), Gaps = 45/408 (11%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH-STDLSP 314
G V V R VTP RV PE +SN V R F D FL ++F+DE++ ++ S L+P
Sbjct: 260 GNVMVPRASVTPLRVVCQPPEQEMSNGVTRRFAEHSDRFLGVNFVDENMGRLQLSPLLAP 319
Query: 315 RGSSATDITRTRIYTRILSTLR--NGILIGDRKFEF-LAFSSSQLRESSAWMFASRYGLT 371
+ + T R + L+ +L+ + SQLR + + +A G
Sbjct: 320 SDCWSIGLACTPFGQRHQTFLKVHPALLVSCVVLSPPVRPRKSQLRGHACFFYAE--GGE 377
Query: 372 AAEIRE---------WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 422
+I E WMG+ I V K+AARLGQS SS+ T+ V +++PD K
Sbjct: 378 VDQISESGSEPAVFHWMGDMSGIDVVGKHAARLGQSLSSTTSTVEVPPALKKLVPDKKA- 436
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCG--LKDNPPSAFQIRYGGYKGVVAADPTS---- 476
Y F+DG G +S AR+VA G + PPSAFQIR GG KG++A P S
Sbjct: 437 ---GPYEFTDGCGMMSEGLAREVADVLGHSVSQPPPSAFQIRMGGCKGMLAVWPDSVMRS 493
Query: 477 -----SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQ 531
K+ +R SM+K+ SE L+V+ +++ PC+LNRQ I+LL TLG+ D++ E++
Sbjct: 494 VSGRGGYKVLVRPSMQKFPSERNTLEVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERY 553
Query: 532 REAVRQLDAI----LTDPLKAQEAL----ELMSPG----ENTNILKELLI---CGYKPDA 576
V LD + L+DP +A+ AL + S G + L E L G
Sbjct: 554 SAMVSTLDKVLRTMLSDPAEAEMALVRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRT 613
Query: 577 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 624
EPFL +L R +++LR +TRIF+P+ ++G +DET L GQ
Sbjct: 614 EPFLQSVLHATRDKAMIDLRHRTRIFVPDASCLLGIVDETGFLQPGQA 661
>gi|400598650|gb|EJP66359.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 1260
Score = 186 bits (472), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 148/467 (31%), Positives = 223/467 (47%), Gaps = 46/467 (9%)
Query: 258 VYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS--PR 315
+V + V P+R++ GP+ NRVLR F D FLR++F DED DLS PR
Sbjct: 441 TWVFKAMVAPTRIFLQGPDPESRNRVLRMFPDHGDYFLRVTFCDED-----GQDLSFNPR 495
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE- 374
++ IY R L GI I R+F FL FS S LR S W A G
Sbjct: 496 ------VSNDAIYERYRQVLIKGIRIAGRQFSFLGFSHSSLRSHSTWFMAPFVGADGQRQ 549
Query: 375 ----IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKY 428
I +G+F +IR AK AAR+GQ+FS + + + I + IPDVK G+
Sbjct: 550 SRDTILAALGDFSDIRIPAKCAARIGQAFSETPYAVDLFKSGIGVRWIPDVKSADGER-- 607
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSL--RDSM 486
VFSDG+G +S + + + FQIR+ G KG++ D K+ ++SM
Sbjct: 608 VFSDGVGTLSRAAVEEFCKALPGRSTTATCFQIRWAGVKGLLVLDTRLQGKVICVRKESM 667
Query: 487 RKYESE-LTKLDVLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
K+ S+ L +L + S+ LNRQ+I +L +G D F Q +A+ L A+
Sbjct: 668 MKFPSQDLQELGICDLASRPLRLVLNRQVIKILEDMGTRDSWFLALQHDALEFLRAVTAT 727
Query: 545 PLKAQEALELMSPGEN---TNILKEL--LICGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
L L+ G ++ +K+L + Y+ DA FL +++ +L L+ K
Sbjct: 728 ALNTSTFLQYQDIGSAIGLSSFIKQLDKMDIDYRRDA--FLKSVVEHVVLRELRLLKHKA 785
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
RI + G ++ G +DET L QV+V Y G+ S + G ++
Sbjct: 786 RIPVHKGVTLFGVMDETGFLQENQVYVT-----YDATRGK-----SGERLDTTLTDGPII 835
Query: 660 VAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
V ++P LHPGD++ ++ V P H + +C+VF QKG R + + L
Sbjct: 836 VTRSPALHPGDIQYVQMVTPPESHPLRSLRNCIVFSQKGSRDLPSQL 882
>gi|346325370|gb|EGX94967.1| rna-dependent rna polymerase [Cordyceps militaris CM01]
Length = 1252
Score = 186 bits (471), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 150/483 (31%), Positives = 223/483 (46%), Gaps = 48/483 (9%)
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
SRS P+I +V + V+P+R+ GP+ NRVLR F D FLR+SF D
Sbjct: 421 SRSGVYGPSIPPHQ--TWVFKAIVSPTRISLQGPDPESRNRVLRMFPDRGDQFLRVSFCD 478
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
ED ++ +PR ++ IY R L GI I R F FL FS S LR S
Sbjct: 479 EDGQRLA---FNPR------VSNDPIYERFREVLTKGIRIAGRHFSFLGFSHSSLRSHST 529
Query: 362 WMFASRYGLTAAE-----IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI- 415
W A I +GNF +I AK AAR+GQ+FS + + + I +
Sbjct: 530 WFLAPFIDADGQRQNRDTILAVLGNFSDILTPAKCAARIGQAFSETPYAVDLFETRIGVR 589
Query: 416 -IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP 474
IPDVK G VFSDG+G +S + + FQIR+ G KG++ DP
Sbjct: 590 WIPDVKSADGNR--VFSDGVGTISWGAVEDFWKALPKRSAGVTCFQIRWAGVKGLLVLDP 647
Query: 475 TSSKKLSL--RDSMRKYES----ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFE 528
K+ ++SM K+ S EL DV S+ LNRQ+I +L +G F
Sbjct: 648 RLPGKVICVRKESMMKFPSQDLKELGICDVA--SRPLRLVLNRQVIKILEDMGTSASWFL 705
Query: 529 KKQREAVRQLDAILTDPLKAQEALELMSPGENTNI---LKEL--LICGYKPDAEPFLSMM 583
Q +A+ L A+ PL L+ G + +K+L + Y+ D FL +
Sbjct: 706 ALQNDALDFLRAVTATPLNTSTFLQYQDIGSAIGLPSFIKQLSKMDIDYRHDT--FLKSV 763
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 643
++ +L L+ K RI +P G ++ G +DET L +V++ +S+
Sbjct: 764 VEHVVLRELRLLKHKARIPVPKGVTLFGVMDETGFLGENEVYITF----------DSTRG 813
Query: 644 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVFPQKGMRYIL 700
S ++ G V+V ++P LHPGD+++ K V P H + +C+ F Q+G R +
Sbjct: 814 KSGERMDATLIDGPVIVTRSPALHPGDIQIAKMVTPPDSHPLKSLRNCIAFSQRGSRDLP 873
Query: 701 TML 703
+ L
Sbjct: 874 SQL 876
>gi|241620373|ref|XP_002408656.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215503015|gb|EEC12509.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 529
Score = 185 bits (470), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 131/339 (38%), Positives = 185/339 (54%), Gaps = 25/339 (7%)
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK--TKYVFSD 432
+R +G+ IR +KY ARLGQ+FS S ++V + D+ ++ K KY FSD
Sbjct: 1 VRAAIGDLSSIRVPSKYMARLGQAFSQSMGYVTVPQACTRVDRDILLKGRKPGIKYNFSD 60
Query: 433 GIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES 491
G+G++S +V + + PSA QIRYGG KG++ DPT ++ RDSM KY S
Sbjct: 61 GVGRISPSVLARVHAALP-AEGKPSAIQIRYGGCKGMLVLDPTLEGDQIVFRDSMFKYPS 119
Query: 492 ELTKLDVLAWSKYQPCFLNRQLISLLS-------TLGIWDEIFEKKQREAVRQ-LDAILT 543
+ +L +L S+ + LNR +I++LS I D +F + Q++ + LD++
Sbjct: 120 QSEELFILKTSRPRVVKLNRPMITILSQKMTRSGVQDIEDGVFMRMQQDCLEPYLDSLFN 179
Query: 544 DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
D K AL L S +EL G AEPF +L L +L+ K I +
Sbjct: 180 D--KGTAAL-LQSESSLRMPYRELAEAGLDLHAEPFFRSLLWALHHRCLKDLKDKMNILV 236
Query: 604 PN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS---LFSSSRSRQRFIVQGLV 658
P GR+M G LDET TL YGQV+V+ S R + S L ++ R R G V
Sbjct: 237 PPRFGRTMFGVLDETATLQYGQVYVRYSTDLDRFGPDDESQYRLCTTFRLRA-----GRV 291
Query: 659 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+V KNPC+HPGD+R+L+AV+VPAL H+ DCVVFPQ G R
Sbjct: 292 MVTKNPCIHPGDIRLLEAVDVPALSHIRDCVVFPQIGKR 330
>gi|341885452|gb|EGT41387.1| hypothetical protein CAEBREN_32717 [Caenorhabditis brenneri]
Length = 1562
Score = 185 bits (470), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 146/493 (29%), Positives = 230/493 (46%), Gaps = 92/493 (18%)
Query: 235 QYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
QY + ++ S + A L V V +V VTPSR+ PE+ + NR++R F D
Sbjct: 653 QYERLLSGESLQDVGLAKPLPKNCVQVAKVIVTPSRILLMAPEVMMVNRIVRRFGPDYA- 711
Query: 294 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
LR F D++L + +S+
Sbjct: 712 -LRCVFRDDNLGR--------------------------------------------WSN 726
Query: 354 SQLRESSAWMFA-------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL 406
SQ+R+ +++A R T EIR+WMG+FRE +V K +R+GQ F+ ++ T+
Sbjct: 727 SQMRDQGCYLYAPRVDPGTGRVSGTVEEIRKWMGDFREAVSVPKMMSRMGQCFTQAQPTV 786
Query: 407 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 466
+ + PDV+ + KY FSDG G++S + A + LK+ P + FQ+R+ G+
Sbjct: 787 RLERRHWIVEPDVEGGLS-GKYCFSDGCGRISVKLANHITKILELKETP-ACFQVRFKGF 844
Query: 467 KGVVAADPT-----SSKKLSLRDSMRKY-----ESELTKLDVLAWSKYQPCFLNRQLISL 516
KG++ DPT K+ R S +K+ + + L+V+ ++ P LNR I++
Sbjct: 845 KGILVIDPTIDDIIGMPKVVFRKSQQKFGEGGGDQQDEYLEVVKYAMPSPVCLNRPFITI 904
Query: 517 LSTLG----------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 566
L + I + I +RE + +L + A+E + + + N K
Sbjct: 905 LDQVSAKQSASSHRRITNRIHYYLERELCSLSNMLLNENQAAEELVNRTNLPIDWN--KA 962
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQV 624
G++ +P + ML + ++ +K +IF+P GRSM G +DET L YGQV
Sbjct: 963 SKHAGFRLSKDPLIRSMLFSIYRYNIIHHISKAKIFLPPDLGRSMYGVVDETGLLQYGQV 1022
Query: 625 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHH 684
F+Q S + RQ S + G V++ KNPC PGDVRV +AV PAL H
Sbjct: 1023 FIQYSQS-IRQT-----------SATPILKTGKVLITKNPCHVPGDVRVFEAVWQPALAH 1070
Query: 685 MVDCVVFPQKGMR 697
+VD VVFP+ G R
Sbjct: 1071 LVDVVVFPRHGPR 1083
>gi|409080807|gb|EKM81167.1| hypothetical protein AGABI1DRAFT_56570 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1201
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 154/479 (32%), Positives = 243/479 (50%), Gaps = 63/479 (13%)
Query: 259 YVHRVQVT--PSRVYFCGPEINVSNRVLRHFRR-DIDNFLRISFIDEDLDKIHSTDLSPR 315
Y H +QVT P+ ++ GP I+ SNRVLR + + + +NFLR+ F DE+ +L R
Sbjct: 395 YYHSLQVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDEN-------NLQYR 447
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS----RYGL- 370
D + R+ + G++I R+F FLA+S S LRE S W + ++G+
Sbjct: 448 SDKDID-DEEFVRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRDPKHGIV 506
Query: 371 TAAEIREWMGNFREI---RNV----AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 423
A +I E +GNFR++ R + A++ AR+ Q+FS++ + V +DEI I D+
Sbjct: 507 NAGKIIESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAI-VEVDEILIKRDITTPD 565
Query: 424 GKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRYGGYKGVVAAD--PTSSK 478
G +Y F+DG G +SA+ AR + + K ++ P A+QIR+ G KG+++ D S
Sbjct: 566 G--QYTFTDGSGDMSADLARDIWHRIARKRDRNDFPRAYQIRHEGSKGMISVDYRLNGSN 623
Query: 479 KLSLRDSMRKYES-ELTKLDV-LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 536
LSLRDSM K+++ E +++V A + P +LNR LI +L LG+ E+F+ Q EAVR
Sbjct: 624 TLSLRDSMIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAVR 683
Query: 537 QLDAILTDPLKAQEALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQTFRAS 590
+ A L+ G I L +L + D P L+
Sbjct: 684 GTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLARD--PLFDQPLRLGVYH 741
Query: 591 KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 650
L +L+ K RI IPN +++G D L +VFV I H E +
Sbjct: 742 VLRDLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIK-------HPE---------KG 785
Query: 651 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRYILTML 703
F ++G V+++++P +HPGDV++ A+ P A + + VVF KG R + + L
Sbjct: 786 SFYLEGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPSCL 844
>gi|391864263|gb|EIT73559.1| RNA-directed RNA polymerase QDE-1 [Aspergillus oryzae 3.042]
Length = 1188
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 172/638 (26%), Positives = 286/638 (44%), Gaps = 77/638 (12%)
Query: 112 QSTGLCMELPYRLELPDFKENFAYYKESED---RFVLETG----SAYSRSLD----LVPI 160
Q G C+ +++ + DF+ N K+ E R+ L T + + S++ L +
Sbjct: 225 QIVGQCLVYQFKVSVVDFRANIEKLKDWEITIYRYNLTTARPLLCSQAVSVEFHKLLSEL 284
Query: 161 VGPPDGIALPYEILFKINLLVQNG----CVAGPLLDSNFYRLVDPY---RAPVSISCIEH 213
++P+ ILF++ L QN + L + R D R P+++
Sbjct: 285 AECTRNRSVPFGILFQLQALAQNAYLHPTTSRKLAEGLRKRFADDKAAGRDPITVD---- 340
Query: 214 ALDKLYHLKECCY---EPSRWLTDQYRKYMTSRSKPSSPAISLDDGL-------VYVHRV 263
+ KL+++ + +P + D + + + + +GL VHRV
Sbjct: 341 GMRKLFNMIGWPFPGDDPRVYEVDFLVATLEANHREIQDGFAYREGLHENTVNMTKVHRV 400
Query: 264 QVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDIT 323
VTP+R+ GPE+ NR+LR F + F+R+ F DE+ + + ++
Sbjct: 401 NVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDLLFN---------ANVD 451
Query: 324 RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREW 378
I+ R + GI I R + FL FS S LR + W F G T I
Sbjct: 452 YKDIFGRFKDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSA 511
Query: 379 MGNFREIRNVAKYAARLGQSFSSSK--ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
+G F I + A+ AAR+GQ+F+ + L H + IPD+ G VFSDG+G
Sbjct: 512 IGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSR--VFSDGVGA 569
Query: 437 VSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE-LT 494
+S E + + LK P+ FQIR GG KG++AAD + + +R SM K++SE +
Sbjct: 570 ISREVVASIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKFDSEDMK 629
Query: 495 KLDVLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE 553
L++ S+ P LNRQ+I +L +G + F + Q E + +L +I K L+
Sbjct: 630 NLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLK 689
Query: 554 LMSPGENTNILKELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 608
S E + + C YK D FL +++ +L L+ K RI + G +
Sbjct: 690 DKSVAECIGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVKKGMT 747
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
+ G +DET L G+V+V + ++ G + G ++V ++P LH
Sbjct: 748 LYGVIDETGFLQEGEVYVT-----FDRMEGRYAAPPGP---------GHILVTRSPALHC 793
Query: 669 GDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
GD++ + V P H + +C+VF QKG R + + L
Sbjct: 794 GDIQRAQNVIPPEDHPLRYHRNCIVFSQKGSRDLPSKL 831
>gi|33331167|gb|AAQ10792.1| RNA-directed RNA polymerase-like protein [Branchiostoma floridae]
Length = 1005
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 108/256 (42%), Positives = 159/256 (62%), Gaps = 24/256 (9%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
L D VY +V VTP+++ F PE V NRV+R + +DNF+R++F DED K+
Sbjct: 363 LPDHYVYARKVVVTPTQMLFLKPEPIVENRVVREY--GVDNFIRVAFRDEDFSKL----- 415
Query: 313 SPRGSSATDITRTRIYT-RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--RYG 369
+ T+ R T R+ L GI IG+R F++L S+SQ+RE WM+A+ +
Sbjct: 416 -----AVTNPNSIRCVTSRVKDVLERGIRIGERHFKYLGSSNSQMREHGCWMYAAVDKTT 470
Query: 370 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE--IEIIPDVKIEIGKTK 427
+ ++IR WMG+ R VA Y +RLGQ FSSS+ +SV +++ +E+I DV+ G
Sbjct: 471 TSTSDIRGWMGDLSHERCVATYVSRLGQFFSSSRNAVSVSVEDRSVELIADVETSSGT-- 528
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADPT--SSKKLSLRD 484
+ FSDGIGK+S A+KVA+ G+ +P PSAFQIRY G KGV+A DPT ++ ++ +R
Sbjct: 529 HTFSDGIGKISVPLAKKVAAALGV--SPVPSAFQIRYAGCKGVLAQDPTLGNTDRIQIRG 586
Query: 485 SMRKYESELTKLDVLA 500
SM+K+ESE L+V +
Sbjct: 587 SMKKFESEHKTLEVTS 602
Score = 89.0 bits (219), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 65/114 (57%), Gaps = 13/114 (11%)
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 643
+Q + K E KT + + +GR MMG +DET L YGQVF+Q S R++ +
Sbjct: 582 IQIRGSMKKFESEHKT-LEVTSGRIMMGTMDETGKLQYGQVFIQYS----REVDKPQA-- 634
Query: 644 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+ + QG V V KNP HPGD+R AV+VP L HMVDC+VFP +G R
Sbjct: 635 ------DKVVHQGQVTVTKNPYFHPGDMRKFTAVDVPELRHMVDCIVFPSRGPR 682
>gi|121716158|ref|XP_001275688.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
gi|119403845|gb|EAW14262.1| rna-dependent rna polymerase [Aspergillus clavatus NRRL 1]
Length = 1203
Score = 184 bits (467), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 133/459 (28%), Positives = 223/459 (48%), Gaps = 47/459 (10%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
L +H+V +TPSR+ GPE NR+LR F D F+R+ F DE +H +
Sbjct: 421 LALIHKVMITPSRITLHGPEPEPFNRILRRFPNHHDYFIRVQFCDEQGGDLHFS------ 474
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
+ +T +++R + L NGI I R + FL +S S LR S W +A I
Sbjct: 475 ---SRVTYDEVFSRFKNVLTNGIQIAGRTYYFLGWSHSSLRSHSVWA-------SAVCII 524
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDGI 434
+ +G+F +I + A+ AAR+GQ+FS + + V + I I +PD+ + G+ FSDG+
Sbjct: 525 KALGDFSKITSPARCAARIGQAFSETPFAIPVEDNTITIEEVPDLASKDGQR--FFSDGV 582
Query: 435 GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESEL 493
G +S + S K P+ FQIR GG KG++A D + + +R SM K++ E+
Sbjct: 583 GSLSLNVLEMIWSNIPPKKGKPTGFQIRLGGAKGMIAIDSRLTGSVIRIRPSMIKFQGEM 642
Query: 494 TKLDVLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
L++ SK P LNRQ+I +L +G+ ++ F + Q + + L +I +
Sbjct: 643 RDLEICDMASKPIPLVLNRQMIKILEDMGVAEDWFFRLQNQELTYLRSITASAQNTAVFI 702
Query: 553 ELMSPGENTNILKELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 607
+ + G+ + + C YK PFL +++ +L L+ K RI + G
Sbjct: 703 KRQAVGDCIGLFRLFRQCHQWKINYK---VPFLRSLVEAVILRELRLLKHKARIPVDKGI 759
Query: 608 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 667
++ G +DET L +V+V + R + ++ G V+V ++P L+
Sbjct: 760 TLFGIIDETEYLQENEVYVTFNTIQGRPVAPPTA--------------GPVLVTRSPALY 805
Query: 668 PGDVRVLKAVNVPALHHM---VDCVVFPQKGMRYILTML 703
GD+++ P H + +C+VF KG R + + L
Sbjct: 806 DGDIQICLNTVPPEDHPLRRHRNCIVFSAKGDRDLPSQL 844
>gi|170584472|ref|XP_001897023.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158595558|gb|EDP34101.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 1542
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 153/497 (30%), Positives = 247/497 (49%), Gaps = 69/497 (13%)
Query: 243 RSKPSSPAISLDD---GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
R A SL D V + +V TP R+ PE+ ++NRV+RHF + LR F
Sbjct: 453 RISDDDEAASLSDLPQNCVLIRKVIATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVF 510
Query: 300 IDEDLDKIHSTDLSPRGSSATD---ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 356
D++ ++ + + RG S D I +Y RIL T G+ I R ++FLA+S+SQ+
Sbjct: 511 RDDNGQRLVPKEFT-RGRSLQDQSLIIPDLVY-RILGT---GLRIASRHYQFLAWSNSQM 565
Query: 357 RESSAWMFASR------YG---LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLS 407
R+ +M++ +G +IR WMG+F + V K +R+GQ F+ ++ T+
Sbjct: 566 RDGGCYMYSDAIVNDEVHGEVVCNVEDIRRWMGDFTASKTVPKLMSRMGQCFTQAQPTIK 625
Query: 408 VHMDEIEIIPD-----VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR 462
+ D+ ++ D V E G+ + FSDG+G++S ++A ++A GL P S +Q+R
Sbjct: 626 LKKDDWKVEDDIMGGIVHPETGEV-FNFSDGVGRISKKYADRIAKTLGLYPTP-SCYQVR 683
Query: 463 YGGYKGVVAADPTSSK----KLSLRDSMRKYESE---LTKLDVLAWSKYQPCFLNRQLIS 515
+ G+KGV+ DP + + R S +K+E + +++V+ +S P LNR LI
Sbjct: 684 FKGFKGVLCIDPLLDELDQVNIVFRKSQKKFEEDDESAAEVEVVKYSMPSPVRLNRPLIM 743
Query: 516 LLSTLGIWDEIFEKKQREA-------VRQLDAILTDPLKAQEALELMSPGENTNILK--- 565
+L D++ +K+ R + L + D L A E ++ E ++ L
Sbjct: 744 IL------DQVSDKQGRHLHKKVCNRIHSLLELELDKLAAMMFDENVATEELSSRLSLPI 797
Query: 566 ---ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLN 620
+L G EPF +L + +K++IF+P GR+M G +D+T L
Sbjct: 798 DFHQLHSNGITFTNEPFFRSLLTAIHRYNIKLHLSKSKIFLPCSMGRTMYGVIDDTGLLQ 857
Query: 621 YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 680
YGQVFVQ S + S ++ + G V+V KNPC GDVR+ +AV
Sbjct: 858 YGQVFVQYSSS------------MQYVSAKKIVYTGSVMVTKNPCHVAGDVRMFEAVYQD 905
Query: 681 ALHHMVDCVVFPQKGMR 697
AL H+ D +VFP+ G R
Sbjct: 906 ALLHLCDVIVFPRYGPR 922
>gi|426197722|gb|EKV47649.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1202
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 154/479 (32%), Positives = 243/479 (50%), Gaps = 63/479 (13%)
Query: 259 YVHRVQVT--PSRVYFCGPEINVSNRVLRHFRR-DIDNFLRISFIDEDLDKIHSTDLSPR 315
Y H +QVT P+ ++ GP I+ SNRVLR + + + +NFLR+ F DE+ +L R
Sbjct: 397 YYHSLQVTISPTSIFLNGPFIDKSNRVLRRYSKANHENFLRVEFRDEN-------NLQYR 449
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS----RYGL- 370
D + R+ + G++I R+F FLA+S S LRE S W + ++G+
Sbjct: 450 SDKDID-DEEFVRRRLGHFMHEGLVIAGRRFRFLAYSQSALREHSVWFVKAFRDPKHGIV 508
Query: 371 TAAEIREWMGNFREI---RNV----AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 423
A +I E +GNFR++ R + A++ AR+ Q+FS++ + V +DEI I D+
Sbjct: 509 NAGKIIESLGNFRDLAYDRTLGYCPARFGARVSQAFSATDAAI-VEVDEILIKRDITTPD 567
Query: 424 GKTKYVFSDGIGKVSAEFARKVASKCGLK---DNPPSAFQIRYGGYKGVVAAD--PTSSK 478
G +Y F+DG G +SA+ AR + + K ++ P A+QIR+ G KG+++ D S
Sbjct: 568 G--QYTFTDGSGDMSADLARDIWHRIARKRDRNDFPRAYQIRHEGSKGMISVDYRLNGSN 625
Query: 479 KLSLRDSMRKYES-ELTKLDV-LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 536
LSLRDSM K+++ E +++V A + P +LNR LI +L LG+ E+F+ Q EAVR
Sbjct: 626 TLSLRDSMIKFDAPESNEIEVSRAIDQPTPYYLNRFLIMILEGLGVKHEVFQGFQDEAVR 685
Query: 537 QLDAILTDPLKAQEALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQTFRAS 590
+ A L+ G I L +L + D P L+
Sbjct: 686 GTQQAMEHLSSASHLLQAHGLGLTFKIPSTMANLSKLDLDNLVRD--PLFDQPLRLGVYH 743
Query: 591 KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 650
L +L+ K RI IPN +++G D L +VFV I H E +
Sbjct: 744 VLRDLKYKARIPIPNAWTLVGVADTHGYLKADEVFVCIK-------HPE---------KG 787
Query: 651 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRYILTML 703
F ++G V+++++P +HPGDV++ A+ P A + + VVF KG R + + L
Sbjct: 788 SFYLEGPVLISRSPTIHPGDVQLAMAIGGPRQGSPFAREPLPNTVVFSVKGDRPLPSCL 846
>gi|317158412|ref|XP_001826725.2| rna-dependent rna polymerase [Aspergillus oryzae RIB40]
Length = 1206
Score = 184 bits (466), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 158/571 (27%), Positives = 259/571 (45%), Gaps = 66/571 (11%)
Query: 168 ALPYEILFKINLLVQNGCVA-------GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH 220
++P+ ILF++ L QN + L F R P+++ + KL++
Sbjct: 292 SVPFGILFQLQALAQNAYLHPTTSRKLAEGLRKRFAEDEAAGRDPITVD----GMRKLFN 347
Query: 221 LKECCY---EPSRWLTDQYRKYMTSRSKPSSPAISLDDGL-------VYVHRVQVTPSRV 270
+ + +P + D + + + + +GL VHRV VTP+R+
Sbjct: 348 MIGWPFPGDDPRVYEVDFLVATLEANHREIQDGFAYREGLHENTVNMTKVHRVNVTPTRI 407
Query: 271 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR 330
GPE+ NR+LR F + F+R+ F DE+ + + ++ I+ R
Sbjct: 408 TLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDLLFN---------ANVDYKDIFGR 458
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFREI 385
+ + GI I R + FL FS S LR + W F G T I +G F I
Sbjct: 459 FIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSAIGKFSHI 518
Query: 386 RNVAKYAARLGQSFSSSK--ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 443
+ A+ AAR+GQ+F+ + L H + IPD+ G VFSDG+G +S E
Sbjct: 519 TSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSR--VFSDGVGAISREVVA 576
Query: 444 KVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE-LTKLDVLAW 501
+ + LK P+ FQIR GG KG++AAD + + +R SM K++SE + L++
Sbjct: 577 SIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKFDSEDMKNLEICNM 636
Query: 502 -SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 560
S+ P LNRQ+I +L +G + F + Q E + +L +I K L+ S E
Sbjct: 637 ASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLKDKSVAEC 696
Query: 561 TNILKELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 615
+ + C YK D FL +++ +L L+ K RI + G ++ G +DE
Sbjct: 697 IGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVKKGMTLYGVIDE 754
Query: 616 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 675
T L G+V+V + ++ G + G ++V ++P LH GD++ +
Sbjct: 755 TGFLQEGEVYVT-----FDRMEGRYAAPPGP---------GHILVTRSPALHCGDIQRAQ 800
Query: 676 AVNVPALH---HMVDCVVFPQKGMRYILTML 703
V P H + +C+VF QKG R + + L
Sbjct: 801 NVIPPEDHPLRYHRNCIVFSQKGSRDLPSKL 831
>gi|83775472|dbj|BAE65592.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1188
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 158/571 (27%), Positives = 259/571 (45%), Gaps = 66/571 (11%)
Query: 168 ALPYEILFKINLLVQNGCVA-------GPLLDSNFYRLVDPYRAPVSISCIEHALDKLYH 220
++P+ ILF++ L QN + L F R P+++ + KL++
Sbjct: 292 SVPFGILFQLQALAQNAYLHPTTSRKLAEGLRKRFAEDEAAGRDPITVD----GMRKLFN 347
Query: 221 LKECCY---EPSRWLTDQYRKYMTSRSKPSSPAISLDDGL-------VYVHRVQVTPSRV 270
+ + +P + D + + + + +GL VHRV VTP+R+
Sbjct: 348 MIGWPFPGDDPRVYEVDFLVATLEANHREIQDGFAYREGLHENTVNMTKVHRVNVTPTRI 407
Query: 271 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR 330
GPE+ NR+LR F + F+R+ F DE+ + + ++ I+ R
Sbjct: 408 TLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEDLLFN---------ANVDYKDIFGR 458
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFREI 385
+ + GI I R + FL FS S LR + W F G T I +G F I
Sbjct: 459 FIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSAIGKFSHI 518
Query: 386 RNVAKYAARLGQSFSSSK--ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 443
+ A+ AAR+GQ+F+ + L H + IPD+ G VFSDG+G +S E
Sbjct: 519 TSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSR--VFSDGVGAISREVVA 576
Query: 444 KVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE-LTKLDVLAW 501
+ + LK P+ FQIR GG KG++AAD + + +R SM K++SE + L++
Sbjct: 577 SIWADIPLKRGNPTCFQIRLGGAKGMLAADSRLRTAVIQIRPSMIKFDSEDMKNLEICNM 636
Query: 502 -SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 560
S+ P LNRQ+I +L +G + F + Q E + +L +I K L+ S E
Sbjct: 637 ASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLKDKSVAEC 696
Query: 561 TNILKELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 615
+ + C YK D FL +++ +L L+ K RI + G ++ G +DE
Sbjct: 697 IGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVKKGMTLYGVIDE 754
Query: 616 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 675
T L G+V+V + ++ G + G ++V ++P LH GD++ +
Sbjct: 755 TGFLQEGEVYVT-----FDRMEGRYAAPPGP---------GHILVTRSPALHCGDIQRAQ 800
Query: 676 AVNVPALH---HMVDCVVFPQKGMRYILTML 703
V P H + +C+VF QKG R + + L
Sbjct: 801 NVIPPEDHPLRYHRNCIVFSQKGSRDLPSKL 831
>gi|449304105|gb|EMD00113.1| hypothetical protein BAUCODRAFT_119665 [Baudoinia compniacensis
UAMH 10762]
Length = 1187
Score = 183 bits (465), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 152/565 (26%), Positives = 257/565 (45%), Gaps = 62/565 (10%)
Query: 170 PYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLY---------- 219
P+ + ++++ L +NGC++ P V I AL Y
Sbjct: 321 PFSVRYQLDRLARNGCIS-PSKLLLLLPAVAEVIDQCGIDATVGALRCFYRQVPRPGPEV 379
Query: 220 HLKECCYEPSRWL----TDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGP 275
+EC R L D Y +Y + A + +H+V +TP+ Y GP
Sbjct: 380 EARECSIRAMRTLIRKYADAYDQYEPGNLYELAKAYM---HINLIHKVVITPAGTYLEGP 436
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIY-TRILST 334
+NRVLR + D F+R+ F DED +H PR S IY R
Sbjct: 437 SAEPTNRVLRKYATQTDCFIRVVFQDEDGSSMHH---DPRASQEA------IYHIRYKGV 487
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFA------SRYGLTAAEIREWMGNFREIRNV 388
L I I + F FL FS S LR S W A +R + + ++ + +G+F IR
Sbjct: 488 LDGTINIAGQGFSFLGFSHSSLRNRSCWFMAPLIDSRTRTLVLSPQVIKELGDFTHIRTP 547
Query: 389 AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASK 448
AK AAR+GQ F+ + ++SV E+ +P V+ + FSDG+G +S + V
Sbjct: 548 AKCAARIGQCFTDTTASVSVKDWEVGKLPVVE----RNGRDFSDGVGTLSRQLFEDVWQV 603
Query: 449 CGLKDN-PPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQ- 505
G+++ P+ QIR+ G KG+V+ D ++L LR +M K+ +++ + + ++
Sbjct: 604 YGMRNALKPTVLQIRFQGAKGMVSLDSRLQGRQLLLRTNMEKFVGSQSRVLEICGAGFRP 663
Query: 506 -PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ---EALELMSPGENT 561
P LNRQ + +L LG E Q V++L +L + E +EL +
Sbjct: 664 LPMVLNRQSVQILEDLGTPTEAVLSLQTREVQKLQCMLESAVNTASLLETMELTKAAKLP 723
Query: 562 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 621
+++ L + FL+ + Q +L +++ + RI I +G ++ G +DET L
Sbjct: 724 DLIDMLDQARLDFRHDRFLTGIAQMAVVHQLRDIKYRGRIHINDGVTLYGIMDETGYLQE 783
Query: 622 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
G+V+V A ++ +++ +++ ++P +HPGD++ + AV+VPA
Sbjct: 784 GEVYVVTEKA--------------PDGGRKELIRNNILITRSPAMHPGDIQQVNAVSVPA 829
Query: 682 ---LHHMVDCVVFPQKGMRYILTML 703
L H+ + VVF Q G R + + L
Sbjct: 830 DSPLKHLSNVVVFSQHGARDLPSQL 854
>gi|302682738|ref|XP_003031050.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
gi|300104742|gb|EFI96147.1| hypothetical protein SCHCODRAFT_235575 [Schizophyllum commune H4-8]
Length = 1178
Score = 183 bits (464), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 156/519 (30%), Positives = 251/519 (48%), Gaps = 64/519 (12%)
Query: 214 ALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFC 273
A D L + EC +R D K + P+ +I L+ VTP+R+ F
Sbjct: 351 ADDDLMSVDECF---ARAAKDFEEKQLNDDIYPADASIFQSLHLI------VTPTRMIFQ 401
Query: 274 GPEINVSNRVLRHF-RRDIDNFLRISFIDEDLDKIHST-DLSPRGSSATDITRTRIYTRI 331
GP SNR++R + + D+FLR+SF DED K+H D GSS + +RI
Sbjct: 402 GPFPERSNRIIRSYDAKHHDSFLRVSFTDED--KLHYRFDRDVDGSSM-------VRSRI 452
Query: 332 LSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY----GLTAAEIREWMGNFREIRN 387
L+NGI + KF+FLA+S S L+E + + + + AA I +GNF +
Sbjct: 453 ERFLKNGICLAGHKFDFLAYSQSALKEHTVYFVKPFWVGIREVNAATIIAGIGNFEGSED 512
Query: 388 ---VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 444
A+YAARL Q+F+++ ++ V +E+ + D+ G Y F+DG+G +S A +
Sbjct: 513 RFCPARYAARLSQAFTATDASVIVEAEEVFPVNDISTPDG--AYHFTDGVGTMSKGMASE 570
Query: 445 VAS-------KCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKL 496
+ + N P+AFQIR+ G KG+++ D +++ LR SM K+ES L
Sbjct: 571 TWAELQRWRKRTKKTKNVPAAFQIRFMGSKGMLSVDHALHGREVCLRHSMIKFESSSDTL 630
Query: 497 DVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 555
++ A+ + +LNR LI ++ LG+ E F + Q AV+ + + K + E
Sbjct: 631 EIARAFDRPGRYYLNRPLIMVMEGLGVPYESFLRHQEAAVQNVHSSSESLAKCAKMFESF 690
Query: 556 SPGENTNILKELL----ICGYKP-DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
G + LL +C K DA F M++ L EL+ + RI IP +++
Sbjct: 691 GLGTAFRVPSLLLNLEKLCNVKNLDANVFYRQMIEFATHHVLRELKNRARIPIPGAYTLV 750
Query: 611 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 670
G D R L G++FV I S + ++G V+++++P +HPGD
Sbjct: 751 GVADVHRYLGPGEIFVCI---------------RPHDSNEVTYLEGDVLISRSPTIHPGD 795
Query: 671 VRVLKAVNVP------ALHHMVDCVVFPQKGMRYILTML 703
V+V++A+ P A + + VVF +G R + TML
Sbjct: 796 VQVVRAIGRPKAGSPFAKEPLANTVVFSVRGTRPLPTML 834
>gi|392567096|gb|EIW60271.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1228
Score = 182 bits (463), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 145/489 (29%), Positives = 237/489 (48%), Gaps = 57/489 (11%)
Query: 254 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 313
D G H + TP+RV GP ++VSNRV+R F D+F+R+ F DED L
Sbjct: 421 DMGKFQCHHITFTPTRVILEGPYVSVSNRVIRQFAGFEDHFVRVDFRDED-------RLQ 473
Query: 314 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF-----ASRY 368
R + D T T + R+ L++G +G R++EFLA+SSS LRE + W ++
Sbjct: 474 YRWAREVDGT-TLLTERVGGILKHGFELGGRQYEFLAYSSSALREHAVWFMNPFEHPTQG 532
Query: 369 GLTAAEIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 427
+ A IR+ +G+F I+ +KYAARL Q+F+++ ++S+ D+ E + D++ E +
Sbjct: 533 FVCAQRIRDSLGDFTNVIKQPSKYAARLAQAFTATDPSVSISRDQWEEMEDLESE--QED 590
Query: 428 YVFSDGIGKVSAEFARKV-ASKCGLK------DNPPSAFQIRYGGYKGVVAADPT-SSKK 479
Y+F+DG+G +S E + + C K D+ P A+QIR+ G+KGVV D K
Sbjct: 591 YLFTDGVGTISQELGDMIWEALCTAKESLRRVDHTPHAYQIRFLGFKGVVVIDKRLKGIK 650
Query: 480 LSLRDSMRKYE---SELTKLDVLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAV 535
+ LR SM K+E ++ +++ W + +LN+ LI +L G+ + F K Q A
Sbjct: 651 MRLRPSMNKFEVPDMDIAPIEIARWFDRPGTSYLNKALIMILEDRGVEQKAFLKLQEMAA 710
Query: 536 RQLDAILTDPLKAQEALELMSPGENTNI---LKELLICGYKPDAEP----------FLSM 582
Q+ L+ + G++ NI LK L G EP FL
Sbjct: 711 AQITTASDTITSTTLLLKAHNLGQSFNIPFVLKALRAAGLGMRGEPDSPAGDLGDTFLRS 770
Query: 583 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET---RTLNYGQVFVQISGAGYRQLHGE 639
+L + L +++ RI IP+ ++G DE VF+ G Y + E
Sbjct: 771 LLIFAQHHILRDIKHGARIPIPDSYLLVGVADEGPVYEKEGVEDVFMLQEGQIYACIQNE 830
Query: 640 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHMVDCVVFPQ 693
+ + ++G V ++++P +HPGDV+ + A+ P + + VV P
Sbjct: 831 A-------DEKPVYLKGTVSISRSPVVHPGDVQRVWAIGEPPAGKECFFRGLKNVVVLPS 883
Query: 694 KGMRYILTM 702
G R + +M
Sbjct: 884 VGKRSLASM 892
>gi|328874858|gb|EGG23223.1| RNA-directed RNA polymerase [Dictyostelium fasciculatum]
Length = 2645
Score = 182 bits (463), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 157/535 (29%), Positives = 255/535 (47%), Gaps = 74/535 (13%)
Query: 177 INLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEPSRWLTDQY 236
+N+L N L+DS FY +D + E+ + L + +R+ Y
Sbjct: 1016 LNVLKSNKEFGKTLIDSKFYENMDLVKGK------ENRYEYLMRAIDSAPFDNRF----Y 1065
Query: 237 RKYMTSRSKPSSPAISLD---DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
+ + +SP SL + + V +TP+R F P + NR LR R DN
Sbjct: 1066 QIDRIGKVNLNSPLDSLQATRENYALIKNVYITPTRTLFQKPSMYQLNRALR--RYGADN 1123
Query: 294 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR-ILSTLRNGILI-GDRKFEFLAF 351
FL + F++E+LD+ + ++ T+ I + L GI+I G +F ++
Sbjct: 1124 FLLVHFVEENLDE--------------KVEYSKFQTKSIENILLEGIMIEGIGRFHYIGN 1169
Query: 352 SSSQLRESSAWMFASRYGLTAAEIREWMGNFR---EIRNVAKYAARLGQSFSSSKETLSV 408
S+SQ R SS W +R + IR + + I N KY LG FS + ++ +
Sbjct: 1170 SASQARSSSCWFTNNRNDIDT--IRNQLVDLSINTGIANPRKYLRSLGLVFSGTTPSIII 1227
Query: 409 HMDEI-EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 467
++ E + DV+ + +F++GIG + A K+ ++ S++QIR GG K
Sbjct: 1228 PNNQYNENLDDVR----NDEAIFTEGIGFIGKNLANKINAENSFPLGT-SSYQIRIGGNK 1282
Query: 468 GVVAADPTSSKKLSLRDSMRKYE---SELTK-LDVLAWSKYQPCFLNRQLISLLSTLGIW 523
GVV+ + + LR+SM+K+ SE+ + L++++ + + C LNRQ+I+L LG+
Sbjct: 1283 GVVSVHHSIENGIYLRNSMKKFNTNNSEMNRTLEIISIASKKNCTLNRQIINLFGGLGVP 1342
Query: 524 DEIFEKKQREAVRQLDAILTDPLKAQEAL---ELMSPGENTNILKELLICGYKPDAEPFL 580
D +F E + +L IL D A+ L + + E T KELL +P +
Sbjct: 1343 DRLFLMLVMECLEKLALILQDSSMARSELKNIDFFNQSEPTE--KELLY-------DPLI 1393
Query: 581 SMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES 640
+L T +L + I I N R+++G +DET TL QVFV+I+
Sbjct: 1394 RRILHTLYKKQLTKYLDFCFIPIKNARTLLGVIDETGTLEENQVFVRIT----------- 1442
Query: 641 SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
+ + + ++Q V V KNPCLHPGDV++ V+ LHHM+D VVF QKG
Sbjct: 1443 -----ADNNEIIVIQSNVAVVKNPCLHPGDVQLAMGVDNQLLHHMLDVVVFSQKG 1492
>gi|403168646|ref|XP_003328239.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167590|gb|EFP83820.2| hypothetical protein PGTG_09533 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1246
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 135/461 (29%), Positives = 233/461 (50%), Gaps = 54/461 (11%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 322
V +TP+R+ GP+I SN +LR +++ +NFLR+S DE ++ R S +I
Sbjct: 437 VTITPTRLSLQGPQIEQSNSILRLYQQ-TENFLRVSLADETGHRL-------RASREVEI 488
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG----LTAAEIREW 378
+ R L G+++ RKFEFL +S+S L++ AW Y +TAA IR
Sbjct: 489 HHL-LRNRYRPFLTKGMILCGRKFEFLGYSNSALKDHQAWFVCPFYKGDQLVTAASIRAK 547
Query: 379 MGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 437
+G+F + IR A+Y AR+ Q+F+S++ +L++ E+ + DV+ + F+DG+G +
Sbjct: 548 LGDFSKVIRIPARYMARIAQAFTSTRRSLTLRPSEVTRMDDVE----RNGSCFTDGVGTI 603
Query: 438 SAEFARKVASKCGL----KDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES- 491
S + +V + K + +QIR GG+KG+++ DPT K + +R SM K+++
Sbjct: 604 SKDLVDEVHRVLNVGNIRKSISSTCYQIRLGGFKGMLSLDPTLKGKVVRMRPSMDKFDAP 663
Query: 492 ELTKLDVLA-WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
+ LD+ ++K +LNR LI LL LGI E+F + Q + +R+++ + P A
Sbjct: 664 DSLTLDIAGTFTKPLVAYLNRPLIKLLEDLGIPSEVFLRLQDKIIRKVENSRSSPKLAGN 723
Query: 551 ALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
++ S G + + L ELL+ +++ F+ L +L+ + RI +
Sbjct: 724 LMQQYSMGSGSGMPSMLHKLSELLVDDRAVESD-FIEECYDLMTVQCLRDLKYRGRIPLD 782
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 664
+++G DE L ++V + ++ ++G V ++P
Sbjct: 783 KSYTLVGVADEDNFLPPDSIYVCVQTPNSAPMY----------------LEGSFAVTRSP 826
Query: 665 CLHPGDVRVLKAVN------VPALHHMVDCVVFPQKGMRYI 699
LHPGDVRV+ AV P L +V+CV FP +G R +
Sbjct: 827 SLHPGDVRVVNAVGKLDPKRAPRLSSLVNCVAFPIQGERSL 867
>gi|395333779|gb|EJF66156.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1220
Score = 182 bits (462), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 147/509 (28%), Positives = 249/509 (48%), Gaps = 66/509 (12%)
Query: 237 RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 296
+K+ T RS + D G + V TP+R+ GP ++ SNRV+R F D+FLR
Sbjct: 398 QKWGTLRSDGQMTERARDSGKFKCYHVTFTPTRILLEGPYVSQSNRVIRQFAGYEDHFLR 457
Query: 297 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 356
+ F DED L R + D T T + R+ TL++G +G R FEFLA+S S L
Sbjct: 458 VDFRDEDR-------LQYRWAREVDGT-TLLEERVGGTLKHGFDLGGRHFEFLAYSQSAL 509
Query: 357 RESSAWMF-----ASRYGLTAAEIREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHM 410
RE + W +R + IR+ +G+F ++ + +KYAARL Q+F+++ ++S+
Sbjct: 510 REHAVWFMNPFDHPTRGYVDGQRIRDSLGDFSKVIDAPSKYAARLAQAFTATDPSVSISH 569
Query: 411 DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV-ASKCGLKDN------PPSAFQIRY 463
D+ E + D +G+ Y+F+DG+G +S + + + C K++ PSA+QIRY
Sbjct: 570 DQCEEMSD----MGEEPYLFTDGVGTISPKLGDMIWEALCTAKEDLRRHERKPSAYQIRY 625
Query: 464 GGYKGVVAADPT-SSKKLSLRDSMRKYES---ELTKLDVLAW-SKYQPCFLNRQLISLLS 518
GYKG+V D K+ LR SM K+++ ++ +++ W +LNR L+ +L
Sbjct: 626 LGYKGMVGIDERLEGVKMRLRPSMNKFDALDKDVAPIEIARWFDNPGTSYLNRSLVMILE 685
Query: 519 TLGIWDEIFEKKQREAVR-------QLDAILTDPLKAQEALELMSPGENTNILKELLICG 571
G+ +F+K Q +AV +D +T L L P IL+ L G
Sbjct: 686 DRGVDKAVFQKLQDKAVEAVVTASDSIDGTVTLLKTHNIGLSLGLP----YILRGLKAIG 741
Query: 572 YKPDA---------EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 622
+ FL ++ +A L +++ RI IP+ ++G DE G
Sbjct: 742 MGMKEKEVTTGTLNDTFLYSLIGYAQAHILRDMKHSARIPIPDSYLLVGLADE------G 795
Query: 623 QVFVQISGAGYRQLHGESSLFSSSRSR---QRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 679
+ + G E+ +F+ ++ + +QG+VV++++P +HPGDV+ + A+
Sbjct: 796 PAY-EAEGVQNVFCLKENQIFACVQNETDDEPTYLQGVVVISRSPVVHPGDVQRVYAIGK 854
Query: 680 PA------LHHMVDCVVFPQKGMRYILTM 702
P ++ + VV P G R + +M
Sbjct: 855 PPDDKVCFFRNLRNVVVLPSVGKRSLASM 883
>gi|453081039|gb|EMF09089.1| RdRP-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 1253
Score = 182 bits (461), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 139/464 (29%), Positives = 232/464 (50%), Gaps = 50/464 (10%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH---STDLSPRG 316
+HRV VTP+ + GPE +NRVLR ++ DNF+R+ F DED ++ S+D
Sbjct: 438 IHRVVVTPTGIRLEGPEPEPTNRVLRLHAQNTDNFVRMVFQDEDGGRVKFDWSSDYQ--- 494
Query: 317 SSATDITRTRIY-TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--RYG--LT 371
RIY R L GI I + F FL FS S LR S W A + G +
Sbjct: 495 ---------RIYHERFQGILDKGITIAGKSFTFLGFSHSSLRSQSCWFMAPFVKAGSLMF 545
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 431
A ++ + +GNF IR AK AAR+GQ+F+ + ++ + D++ + E+ + + F+
Sbjct: 546 AEKVIKELGNFSGIRTPAKCAARIGQNFTDTNTSVRLQRDQVFEL----AEVVRNGHDFA 601
Query: 432 DGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY 489
DG G +S +V G K P+A QIR+ G KG+VA D K+L LR++MRKY
Sbjct: 602 DGAGTISKGLLEEVWKVYGTKRMLKPTALQIRFQGAKGMVAQDTRLPGKRLMLRNNMRKY 661
Query: 490 ---ESELTKLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
+ L++ + + P LNR I +L L + ++ F Q +A+ +L +
Sbjct: 662 LTGADDHMDLEICGAAFRPLPMILNRGFIKILEDLAVPEQSFINLQNKAMERLRMMTQSA 721
Query: 546 LKAQEALELMSPGENT---NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
+ L+ + + + ++++ L G + FL ++ S+L +++ + RI
Sbjct: 722 INTGTLLDEVHTSKASGLPSLIRYLGQIGLDYHHDDFLYAAVELAVISELRDIKHRGRIP 781
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
+P G ++ G DET L G++FV I+ G + +V+ V++ +
Sbjct: 782 VPKGVTLFGVPDETGYLKEGEIFV-ITERG-------------PTGGKEILVRDKVIITR 827
Query: 663 NPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRYILTML 703
+P LHPGD+++ KAV+VP + + + VVF + G R + + L
Sbjct: 828 SPALHPGDIQLAKAVDVPPGNSNRQLSNVVVFSKWGQRDLPSKL 871
>gi|299752904|ref|XP_001832921.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298410053|gb|EAU88888.2| RNA-dependent RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1251
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 140/462 (30%), Positives = 224/462 (48%), Gaps = 53/462 (11%)
Query: 247 SSPAISLDDGLVYVH-RVQVTPSRVYFCGPEINVSNRVLRHFR-RDIDNFLRISFIDEDL 304
SP++ DG Y V VTP+ ++ GP SNRV+R + + +FLR++F DE
Sbjct: 420 GSPSLEATDGSNYQSLHVTVTPTAIFLEGPYPEQSNRVIRAYDPQHHSSFLRVTFADEGR 479
Query: 305 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 364
+ S+D R R R +L NG+ I R+FEFLA+S S L+E S W
Sbjct: 480 LQYRSSD---RQVDHKAFVRARFGDILL----NGLEIAGRRFEFLAYSMSALKEHSVWFV 532
Query: 365 --------ASRYGLTAAEIREWMGNF-------REIRNVAKYAARLGQSFSSSKE-TLSV 408
R +TA I + +G F R + A+YAAR+ Q+F+++ T+ V
Sbjct: 533 KPFDVIENGHRVTVTADSIIQSLGTFDGLDFEPRLMHCPARYAARISQAFTATDLCTIEV 592
Query: 409 HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP-PSAFQIRYGGYK 467
EI +I D+++ G K+ +DG+G +S +R + + P P+A Q+R GG K
Sbjct: 593 QDLEITVIDDIEVTSGGHKWTHTDGVGTMSPMASRAIWKALPKRKGPAPAADQVRIGGAK 652
Query: 468 GVVAADPT-SSKKLSLRDSMRKYESELTKLDVLA--WSKYQPCFLNRQLISLLSTLGIWD 524
G+++ D T + K+ LR SM K+E+ K +A + + P +LNR LI +L LG+
Sbjct: 653 GMLSVDYTLTGHKICLRPSMVKFEAPTRKYIEIARAFDRPTPYYLNRPLIMILEGLGVPY 712
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN------TNILKELLICGYKPDAEP 578
FE Q AVR+ + +A L+ G + N L L I PD
Sbjct: 713 STFEHFQDRAVRETRQAASSLRRAASMLDSYGLGSSFRLSSVMNSLDRLGIRHLNPDK-- 770
Query: 579 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 638
F S ++ L +L+ RI IP +++G D R L G++F +
Sbjct: 771 FYSKAMEFAINHVLRDLKNHARIPIPGAWTLVGVADVHRFLQPGEIFAYVKPT------- 823
Query: 639 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 680
+ + F ++G ++++++PC+HPGDVR+ +A+ P
Sbjct: 824 ---------NEKGFYLEGDILISRSPCIHPGDVRITRAIGPP 856
>gi|134114255|ref|XP_774375.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257010|gb|EAL19728.1| hypothetical protein CNBG3560 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1123
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 141/458 (30%), Positives = 227/458 (49%), Gaps = 44/458 (9%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADNMKLI 425
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
S I R+ L+ G++IG F +A S+SQ +E + W F + + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 437 VSAEFARKVA----SKCGLKDNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYE 490
E + A K G+ ++ PSA Q R GG KGV++ + + ++ LR SM K++
Sbjct: 537 AGREVLNQAALALNEKVGI-NSQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFK 595
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPL 546
S+L L+V+ +KYQ FLNRQ I+++ G+ E IFE + D + + +
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 547 KA--QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
Q+ + L N L +L+ G+ + P L + L +L+ + R+ +
Sbjct: 656 TENDQQLIALC----NDFPLAQLIKSGF--NENPLLLDVAAIIECRALQDLKWRARVKLL 709
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 664
+G ++G DET TL G+VF Q F + IV V+V + P
Sbjct: 710 DGVYLIGIADETGTLKEGEVFCQ---------------FQENDESPPKIVVNEVLVCRAP 754
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
LHPGDVR AV+ P L H+ + +VF +GMR + +M
Sbjct: 755 ALHPGDVRRAWAVDNPELRHLKNVIVFSTQGMRDMPSM 792
>gi|238508311|ref|XP_002385352.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
gi|220688871|gb|EED45223.1| RNA-dependent RNA polymerase, putative [Aspergillus flavus
NRRL3357]
Length = 1107
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 170/638 (26%), Positives = 284/638 (44%), Gaps = 77/638 (12%)
Query: 112 QSTGLCMELPYRLELPDFKENFAYYKESED---RFVLETG----SAYSRSLD----LVPI 160
Q G C+ +++ + DF+ N K+ E R+ L T + + S++ L +
Sbjct: 225 QIVGQCLVYQFKVSVVDFRANIEKLKDWEITIYRYNLTTARPLLCSQAVSVEFHKLLSEL 284
Query: 161 VGPPDGIALPYEILFKINLLVQNGCVA-------GPLLDSNFYRLVDPYRAPVSISCIEH 213
++P+ ILF++ L QN + L F R P+++
Sbjct: 285 AECTRNRSVPFGILFQLQALAQNAYLHPTTSRKLAEGLRKRFAEDEAAGRDPITVD---- 340
Query: 214 ALDKLYHLKECCY---EPSRWLTDQYRKYMTSRSKPSSPAISLDDGL-------VYVHRV 263
+ KL+++ + +P + D + + + + +GL VHRV
Sbjct: 341 GMRKLFNMIGWPFPGDDPRVYEVDFLVATLEANHREIQDGFAYREGLHENTVNMTKVHRV 400
Query: 264 QVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDIT 323
VTP+R+ GPE+ NR+LR F + F+R+ F DE+ + + ++
Sbjct: 401 NVTPTRITLHGPEMEPQNRILRKFPNHHEYFIRVQFCDENGEGLLFN---------ANVD 451
Query: 324 RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREW 378
I+ R + + GI I R + FL FS S LR + W F G T I
Sbjct: 452 YKDIFGRFIDIMTRGIQIAGRTYNFLGFSHSSLRSRAVWFSSPFVDDNGHMQTYFSIVSA 511
Query: 379 MGNFREIRNVAKYAARLGQSFSSSK--ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
+G F I + A+ AAR+GQ+F+ + L H + IPD+ G VFSDG+G
Sbjct: 512 IGKFSHITSPARCAARIGQAFTETPFMVPLEKHGVLVSTIPDLTSPDGSR--VFSDGVGA 569
Query: 437 VSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE-LT 494
+S E + + LK P+ FQIR G KG++AAD + + +R SM K++SE +
Sbjct: 570 ISREVVASIWADIPLKRGNPTCFQIRLGRAKGMLAADSRLRTAVIQIRPSMIKFDSEDMK 629
Query: 495 KLDVLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE 553
L++ S+ P LNRQ+I +L +G + F + Q E + +L +I K L+
Sbjct: 630 NLEICNMASRPYPMVLNRQVIKILEDMGASKDWFFQMQNEELTRLQSITVSTDKTARFLK 689
Query: 554 LMSPGENTNILKELLIC-----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 608
S E + + C YK D FL +++ +L L+ K RI + G +
Sbjct: 690 DKSVAECIGLYRLYRQCYWTRLNYKKDG--FLRAIVEAVVLRELRLLKHKARIPVKKGMT 747
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
+ G +DET L G+V+V + ++ G + G ++V ++P LH
Sbjct: 748 LYGVIDETGFLQEGEVYVT-----FDRMEGRYAAPPGP---------GHILVTRSPALHC 793
Query: 669 GDVRVLKAVNVPALH---HMVDCVVFPQKGMRYILTML 703
GD++ + V P H + +C+VF QKG R + + L
Sbjct: 794 GDIQRAQNVIPPEDHPLRYHRNCIVFSQKGSRDLPSKL 831
>gi|452838162|gb|EME40103.1| hypothetical protein DOTSEDRAFT_138071 [Dothistroma septosporum
NZE10]
Length = 947
Score = 181 bits (458), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 230/460 (50%), Gaps = 56/460 (12%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
VH++ +TP+ Y GP+ +NRVLR + D+F+R+ F DED + R
Sbjct: 139 VHKIIITPAGTYLEGPDAEPTNRVLRRYHHSTDHFVRVIFQDEDRSPM-------RHDPR 191
Query: 320 TDITRTRIY-TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA---SRYG--LTAA 373
TD +++IY R L +LI R F FL FS S LR S W A S+ G + A
Sbjct: 192 TD--QSQIYHMRFKGVLDGSVLICGRAFSFLGFSHSSLRSQSCWFSAPMVSKQGSLVFAE 249
Query: 374 EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 433
++ + +G+F +IR AK AAR+GQ+F+ + ++ + +E+ +P+V+ + FSDG
Sbjct: 250 QVIKELGDFSKIRVPAKCAARIGQNFTDTNASVKLRPEEVFELPNVE----RNGRDFSDG 305
Query: 434 IGKVSAEFARKVASKCGLKD-NPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES 491
+G +S + V + G K P+A QIR+ G KG+VA D K+L +R +M+KYE+
Sbjct: 306 VGTISERLLQSVHRRYGSKKLLKPTALQIRFQGSKGMVALDSRLPGKRLMIRPNMKKYET 365
Query: 492 ELT-KLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD---------A 540
T L++ + + P LNR I ++ LG F Q A+ L A
Sbjct: 366 AATWDLEICGAAFRPLPMVLNRPFIKVMEDLGTPISTFMDLQNAAMVHLQRMTASCINTA 425
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
I D +A A + + +++ L G + F+ +++ +KL +++ K R
Sbjct: 426 IFLDDSEACRATRM------SELIRYLGQIGLDYHHDHFMYSVVEMAVVAKLRDIKYKGR 479
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
I + G ++ G +DET L +++V + + ++ +V ++V
Sbjct: 480 IPVEQGVTLYGIMDETGYLGPREIYV---------------VTEKAEGGKKVVVANDIIV 524
Query: 661 AKNPCLHPGDVRVLKAVNVPA---LHHMVDCVVFPQKGMR 697
++P LHPGD++V+ AV+VP L + + VVF + G R
Sbjct: 525 TRSPALHPGDMQVVNAVDVPQTSPLKRLSNVVVFSKHGDR 564
>gi|409080815|gb|EKM81175.1| hypothetical protein AGABI1DRAFT_56593 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1176
Score = 179 bits (455), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 152/497 (30%), Positives = 250/497 (50%), Gaps = 75/497 (15%)
Query: 247 SSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF-RRDIDNFLRISFIDED-L 304
S+ + +D+ L VTP+ + GP SNRV+R + +R+ DNFLR+ F +ED L
Sbjct: 386 STSPLLVDEALCQTFHAMVTPTTILLTGPFPERSNRVIRRYGKRNEDNFLRVEFREEDGL 445
Query: 305 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM- 363
D++ R S + RI L+ I+I R F+FLA+S S LRE S W
Sbjct: 446 QYRLDRDVNGRAS---------LRHRISPILKEKIVIAGRSFDFLAYSQSALREHSVWFC 496
Query: 364 ---FASRYG-LTAAEIREWMGNF------REIRNV-AKYAARLGQSFSSSKETLSVHMDE 412
S G + AA I + +G F +E+ N A+YAARL Q+F+++ E + ++E
Sbjct: 497 RPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARYAARLSQAFTAT-EAATFRVEE 555
Query: 413 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-----DNPPSAFQIRYGGYK 467
+I D+K +Y+F+DG G +S +FAR++ K ++ P A+QIRY G K
Sbjct: 556 PQIRKDIKT--NDKQYIFTDGCGCMSEDFAREIWQTMHPKGRDSEEDFPRAYQIRYAGSK 613
Query: 468 GVVAAD--PTSSKKLSLRDSMRKYES-ELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIW 523
G+++ D S+ +R SM K+++ E +++++ K P + NR LI LL LG+
Sbjct: 614 GMLSVDYKLKGSRTFVVRPSMIKFDAPEAKEIEIVRGIKNPTPYYFNRPLIMLLEGLGVN 673
Query: 524 DEIFEKKQREAV-RQLDAILTDPLKAQEALELMS----------PGENTNILKELLICGY 572
++ + Q +AV + DA L Q+A++L+ P NI+ +L I
Sbjct: 674 YDVLQHFQDKAVAKTQDATLA----LQDAIDLLENHGLGSSFRRPSTMQNII-QLGIDAL 728
Query: 573 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 632
+ DA F +L+ L +L+ RI IP+ +++G DE L ++F I +
Sbjct: 729 QSDA--FYGRLLRVAVYHALRDLKNNARIPIPDAWTLVGVADEHNFLGKNEIFACIKKSD 786
Query: 633 YRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMV 686
++ ++G V+V+++PC+HPGDV+V+ A+ P + +
Sbjct: 787 GEMIY----------------LEGHVLVSRSPCIHPGDVQVVSAIGRPPKGSCFEVESLQ 830
Query: 687 DCVVFPQKGMRYILTML 703
+ VVF KG R I + L
Sbjct: 831 NTVVFSTKGNRPIPSCL 847
>gi|449550827|gb|EMD41791.1| hypothetical protein CERSUDRAFT_147107 [Ceriporiopsis subvermispora
B]
Length = 1211
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 146/468 (31%), Positives = 239/468 (51%), Gaps = 59/468 (12%)
Query: 262 RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATD 321
R+ VTP+ GP NRV+R R + D+FLR++F+DE+ + + D GS
Sbjct: 424 RLIVTPTTWSLEGPFPERFNRVIRTHRDNCDSFLRVAFVDENRLQ-YRFDREVDGSEF-- 480
Query: 322 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF-----ASRYGLTAAEIR 376
I R+ L NGI I R FEFLA+S S LRE + W AS + A I
Sbjct: 481 -----IRRRVKGLLINGITIAGRHFEFLAYSQSALREHAVWFVKSFTDASGACVDAPGII 535
Query: 377 EWMGNF------REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
+GNF + I A++AAR+ Q+F+++ ++SV +EI I+ D++ + +F
Sbjct: 536 RTLGNFHVNYDPQLIYCPARWAARVSQAFTATDASVSVEAEEIIILDDIE---DSNRRLF 592
Query: 431 SDGIGKVSAEFARKV-----ASKCGLKDNP--PSAFQIRYGGYKGVVAADPT-SSKKLSL 482
+DG+G +SAE A+ + A + + P P AFQIR+GG KG+++ D T + + L
Sbjct: 593 TDGVGTISAELAKAIWKELCARRHRNRRRPAYPRAFQIRFGGSKGMLSVDYTLEGRIICL 652
Query: 483 RDSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
R SM K+E+ + + +A + +P +LNR LI LL LG+ ++F+K Q +AV+ ++
Sbjct: 653 RRSMIKFEAPHSMVVEVARAFDRPGKYYLNRPLIMLLEGLGVPYDVFQKLQDDAVQHVEE 712
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS----MMLQTFRASKLL-EL 595
A LE G + L +++ +K EPF+ + F + +L EL
Sbjct: 713 SRGSLETAARLLETHGLGSSFR-LTSVMLALHKLGVEPFMQDVFWRQMMDFAVNHVLREL 771
Query: 596 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 655
+ RI +P+G +++G D L GQ+F I G + ++ ++
Sbjct: 772 KHHARIPVPDGWTLVGVADVHGFLEEGQIFACIIPTD-----GAAPIY----------LE 816
Query: 656 GLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMR 697
G +++++P +HPGDV+V+ A+ P A + + VVF KG R
Sbjct: 817 GPTLISRSPTIHPGDVQVVHAIGKPPPNSPFAKESLRNTVVFSIKGSR 864
>gi|426197730|gb|EKV47657.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1151
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 147/490 (30%), Positives = 248/490 (50%), Gaps = 61/490 (12%)
Query: 247 SSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF-RRDIDNFLRISFIDED-L 304
S+ + +D+ L VTP+ + GP SNRV+R + +R+ DNFLR+ F +ED L
Sbjct: 361 STSPLLVDEALCQTFHAMVTPTTILLTGPFPERSNRVIRRYGKRNEDNFLRVEFREEDGL 420
Query: 305 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM- 363
D++ R S + RI L+ I+I R F+FLA+S S LRE S W
Sbjct: 421 QYRLDRDVNGRAS---------LRHRISPILKEKIVIAGRSFDFLAYSQSALREHSVWFC 471
Query: 364 ---FASRYG-LTAAEIREWMGNF------REIRNV-AKYAARLGQSFSSSKETLSVHMDE 412
S G + AA I + +G F +E+ N A+YAARL Q+F+++ E + ++E
Sbjct: 472 RPFVDSDLGEVDAARIIQDLGTFDNLSYDKELINCPARYAARLSQAFTAT-EAATFRVEE 530
Query: 413 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-----DNPPSAFQIRYGGYK 467
+I D+K +Y+F+DG G +S +FAR++ K ++ P A+QIRY G K
Sbjct: 531 PQIRKDIKT--NDKQYIFTDGCGCMSEDFAREIWQTMHPKGRDSEEDFPRAYQIRYAGSK 588
Query: 468 GVVAAD--PTSSKKLSLRDSMRKYES-ELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIW 523
G+++ D S+ ++R SM K+++ E +++++ K P + NR LI LL LG+
Sbjct: 589 GMLSVDYKLKGSRSFAVRPSMIKFDAPEAKEIEIVRGIKNPTPYYFNRPLIMLLEGLGVN 648
Query: 524 DEIFEKKQREAV-RQLDAI--LTDPLKAQEALELMSPGENTNILKELLICGYKP-DAEPF 579
++ + Q +AV + DA L D + E L S + ++ ++ G ++ F
Sbjct: 649 YDVLQHFQDKAVAKTQDATRALQDAIILLENHGLGSSFRLASTMQNIIKLGIDALQSDAF 708
Query: 580 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE 639
+L+ L +L+ RI IP+ +++G DE L ++F I + ++
Sbjct: 709 YGRLLRVAVYHALRDLKNNARIPIPDAWTLVGVADEHNFLGKNEIFACIKKSDGEMIY-- 766
Query: 640 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQ 693
++G V+V+++PC+HPGDV+V+ A+ P + + + VVF
Sbjct: 767 --------------LEGHVLVSRSPCIHPGDVQVVSAIGKPPKGSCFEVQSLQNTVVFST 812
Query: 694 KGMRYILTML 703
KG+R I + L
Sbjct: 813 KGIRPIPSCL 822
>gi|145547505|ref|XP_001459434.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|74830373|emb|CAI39057.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
gi|124427259|emb|CAK92037.1| unnamed protein product [Paramecium tetraurelia]
Length = 1331
Score = 179 bits (453), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 132/463 (28%), Positives = 231/463 (49%), Gaps = 60/463 (12%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
+ RV +TPS F ++ ++R + +DNF+R+ F DE+L+ IH
Sbjct: 513 IKRVSLTPSGYIFNLKLPEETSEIIRQYYNQLDNFIRLHFEDENLETIHGHHYI------ 566
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-SRYGLTAAEIREW 378
T Y + S L NG+ + +F L +S+SQLR S W+F +R ++ +
Sbjct: 567 -----TEYYFK--SKLSNGLHLLGEQFRLLTWSASQLRGGSCWIFNYNRAQISRQNFIDS 619
Query: 379 MGNFREIR--NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
+GNF + VAK AARLGQ+FSSSK S+ + +I + V ++G +++DGIGK
Sbjct: 620 IGNFNTLNMDQVAKNAARLGQNFSSSK---SIDLRQIIVKTQVPDKVGDNGKLYTDGIGK 676
Query: 437 VSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA-ADPTSSKKLSLRDSMRKYESEL-- 493
+S + + + ++ SA Q+RY G KGV+ D + LR SM K+ L
Sbjct: 677 ISRNLIEMI--RVEMNNHTISAIQVRYHGAKGVLLLNDDLPDNTIELRKSMIKFNPTLMN 734
Query: 494 -----TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL------DAIL 542
T + +L ++K++ +LNRQ+I LL TLGI +E+F + QRE + ++ D+ +
Sbjct: 735 DGNYKTMISLLDYNKFRGGYLNRQIIILLVTLGIQEEVFMQLQREYLHKIANLSAVDSSI 794
Query: 543 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
+ EL + ++ ++ + ++ +L + L++LRTK+ I
Sbjct: 795 YNHFLVDYNGELQGLPSIIDNIRMMINANLNENNNHYIKRVLDRLKRRGLMQLRTKSNIL 854
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
+ ++G +D+ L+ G+V + S ++I G ++V +
Sbjct: 855 MDQAARVLGVVDDYDILDQGEVVCIVK--------------QSLDVNHKYIT-GEIIVVR 899
Query: 663 NPCLHPGDVRVLKAVN---VPALHHM-------VDCVVFPQKG 695
NPCLHPGD+R ++A++ + + ++M +C+VFP KG
Sbjct: 900 NPCLHPGDIRKVRALSENEILSRYNMKNPFAEYYNCIVFPCKG 942
>gi|402590834|gb|EJW84764.1| RNA-dependent RNA polymerase, partial [Wuchereria bancrofti]
Length = 1136
Score = 179 bits (453), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 153/505 (30%), Positives = 248/505 (49%), Gaps = 79/505 (15%)
Query: 243 RSKPSSPAISLDD---GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISF 299
R + A SL D V + +V TP R+ PE+ ++NRV+RHF + LR F
Sbjct: 42 RISDDNEAASLSDLPQNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA--LRCVF 99
Query: 300 IDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRES 359
D++ ++ + + RG S D + I I TL G+ I R ++FLA+S+SQ+R+
Sbjct: 100 RDDNGQRLVPKEFT-RGRSLQDQSLI-IPDLIYRTLGTGLHIASRHYQFLAWSNSQMRDG 157
Query: 360 SAWMFASR------YG---LTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHM 410
+M++ +G +IR WMG+F +NV K +R+GQ F+ ++ T+ +
Sbjct: 158 GCYMYSDATVNDEVHGEMVYNVEDIRRWMGDFTASKNVPKLMSRMGQCFTQAQPTIMLKK 217
Query: 411 DEIEIIPD-----VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
D+ ++ D V E G+ + FSDG+G++S ++A ++A GL P S +Q+R+ G
Sbjct: 218 DDWKVEDDILGGIVHPETGEV-FNFSDGVGRISKKYADRIAKTLGLCPTP-SCYQVRFKG 275
Query: 466 YKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE 525
+KGV+ DP + RK T+++V+ +S P LNR LI +L D+
Sbjct: 276 FKGVLCIDPLLDELDQANIVFRK-----TEVEVVKYSMPSPVCLNRPLIMIL------DQ 324
Query: 526 IFEKKQRE---------------AVRQLDAILTDPLKAQEAL-----------ELMSPG- 558
+ EK+ R + +L A++ D A E L +L S G
Sbjct: 325 VSEKQGRHLHKKVCNRIHSLLELELDKLAAMMFDENIATEELSSRLSLPIDFHQLHSNGI 384
Query: 559 --ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI--FIP--NGRSMMGC 612
N + LLI ++ + FL++ + A+ ++ +I F+P GR+M G
Sbjct: 385 TFTNEPFFRSLLIAVHRYNISWFLTLYEYSNIATGIIFRIASKQIQNFLPCSMGRTMYGV 444
Query: 613 LDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 672
+D+T L YGQVF+Q S + L ++ + G V+V KNPC GDVR
Sbjct: 445 IDDTGLLQYGQVFIQYSSSMQYVL------------TKKIVYTGSVMVTKNPCHVAGDVR 492
Query: 673 VLKAVNVPALHHMVDCVVFPQKGMR 697
+ +AV AL H+ D +VFP+ G R
Sbjct: 493 MFEAVYQDALLHLCDVIVFPRYGPR 517
>gi|393247829|gb|EJD55336.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 177 bits (450), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 146/494 (29%), Positives = 234/494 (47%), Gaps = 73/494 (14%)
Query: 251 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 310
++ D + V ++ +TP+RV GPE SNRVLR + +ID FLR++F D D H
Sbjct: 415 LAAHDSPLQVQKIIITPTRVKLSGPEPEQSNRVLRRYAENIDAFLRVTFADNDEYSYHY- 473
Query: 311 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----S 366
DI T + + + L+NGI I RKFEFLA+SSS L+E S W
Sbjct: 474 ------DREVDIP-TFVKSAVGIPLKNGITIAGRKFEFLAYSSSALKEHSVWFVTPFVEE 526
Query: 367 RYGL--TAAEIREWMGNF-REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 423
+ G TA IR+ +G+F +E A+ AR+ Q+FS++ SV ++EI + D+ +
Sbjct: 527 KTGTYHTAKTIRDSLGDFEKEKYCAARLGARMAQAFSATDP--SVEVEEILPLDDIP-KA 583
Query: 424 GKTKYVFSDGIGKVSAEFARKV---------ASKCGLKDNPPSAFQIRYGGYKGVVAAD- 473
SDG+G +S +F+ +V + G PSAFQIRY G KG+++ D
Sbjct: 584 SSGPQCMSDGVGTMSRDFSEQVWEALESRRNKGRRGKNRPAPSAFQIRYKGAKGMLSVDY 643
Query: 474 PTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQ 531
+ LR SM K+E ++ +A + P +LNR LI LL LG+ ++F Q
Sbjct: 644 KLKGSVICLRPSMIKFEDLNSRELEIARAFNTPARMYLNRPLIVLLEGLGVKPDVFMNLQ 703
Query: 532 REAVRQLDAILTDPLKAQEALELMSPG----------------ENTNILKELLICGYKPD 575
+ A+ + A LE G + + + ELL
Sbjct: 704 QAALEDIHKAAGSLDTAARMLESHGLGAAFRLPSLFTSLHKLRDKHSAISELLA------ 757
Query: 576 AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQ 635
+ F +L EL+ K RI +P+ +++G +D L G++F +
Sbjct: 758 EDDFFRRVLDFAINHIRRELKYKARIPVPDSWTLVGVVDVHDYLKEGEIFAAV------- 810
Query: 636 LHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA-----LH-HMVDCV 689
+++ F +QG +++ ++P +HPGDV+V++A+ P +H + +CV
Sbjct: 811 --------KPRDAKKPFYLQGPMLITRSPVIHPGDVQVVRAIGRPPPGSPFVHEELPNCV 862
Query: 690 VFPQKGMRYILTML 703
VF KG R + + L
Sbjct: 863 VFSIKGKRSLASCL 876
>gi|308458494|ref|XP_003091586.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
gi|308255699|gb|EFO99651.1| hypothetical protein CRE_24272 [Caenorhabditis remanei]
Length = 1634
Score = 177 bits (450), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 153/496 (30%), Positives = 236/496 (47%), Gaps = 78/496 (15%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
G V +V +TP+R + PE ++NR +R D +R + D++L K+ L
Sbjct: 443 GYRKVRKVILTPTRKIYLAPEKIMANRAIRGACHDGTRIIRATLRDDNLQKMRFNLL--- 499
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA-AE 374
G+ +IT L LR+G I +R F +LA S+SQ+RE A+ F RY AE
Sbjct: 500 GNLQGEIT--------LGHLRDGFGIMERAFGYLASSNSQMREGGAY-FMERYDAEQLAE 550
Query: 375 IRE------------------W--MGNFREIRNVAKYAARLGQSFSSSK--ETLSVHMDE 412
+E W +G F + ++ K ARLGQ F+ ++ + +S+ +
Sbjct: 551 YKEEHPGEPVPHSFKPMIKEYWNVLGKFVDTGSIPKALARLGQCFTQARPIDNVSISPTD 610
Query: 413 IEIIPDV---KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV 469
++IPD K GK Y+++DG+G +SA A ++ G+K + P AFQ R+ G+KG+
Sbjct: 611 YKMIPDAIGGKNTEGKP-YMYTDGVGCISAGLAEQIFGSLGIK-HVPCAFQFRFRGFKGM 668
Query: 470 VAADPTSSK---------------KLSLRDSMRKYES--ELTKLDVLAWSKYQPCFLNRQ 512
+A DP K R S K+ES E +++++ WS P LN+
Sbjct: 669 LAIDPNIDHTANHWESLGLRYHRIKCLFRKSQLKFESCQEDEQMEMVKWSSPTPVTLNKP 728
Query: 513 LISLLSTL-GIWDEIFEKKQREAVRQL--------DAILTDPLKAQEALELMSPGENTNI 563
I++L + G+ K+ V +L A + + K +E LE M +
Sbjct: 729 FINILDQVSGLQSLECHKRVSGRVEELLSMEMDNYSAAVVNEEKCREVLEGMP--RRIHF 786
Query: 564 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNY 621
G+ EPF +++ S + L K +I IP GRSM G DET L Y
Sbjct: 787 ASMERKNGFVLSTEPFFRSLVKATIDSAMSRLLRKLQIPIPGNLGRSMFGITDETGQLQY 846
Query: 622 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
GQVFV+ + + H SR ++ + G V+V K P L GDVR+ +AV++P
Sbjct: 847 GQVFVRYT-ENVNEKH-------PSRHKKTITLTGKVLVTKFPSLCEGDVRMYEAVDIPE 898
Query: 682 LHHMVDCVVFPQKGMR 697
LHH+ D +VFPQ G R
Sbjct: 899 LHHLQDVIVFPQTGPR 914
>gi|299116728|emb|CBN76286.1| RNA-dependent RNA polymerase 2 [Ectocarpus siliculosus]
Length = 634
Score = 177 bits (449), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 128/385 (33%), Positives = 187/385 (48%), Gaps = 73/385 (18%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
G V V R VTP RV PE +SN V R F D FLR++F+DE++ ++ LSP
Sbjct: 43 GNVMVPRASVTPLRVVCQPPEQEMSNGVTRRFAEHSDRFLRVNFVDENMGRLQ---LSP- 98
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL-TAAE 374
+ R+ +++G++I RK+EFLA+S SQLR + + +A G TA
Sbjct: 99 ----------LLVPRLEGFMKDGLVIAGRKYEFLAYSGSQLRGHACFFYAEGDGAPTADS 148
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 434
IR WMG+ I V K+AARLGQS SS+ T+ V +++PD K Y F+DG
Sbjct: 149 IRSWMGDMSGIDVVGKHAARLGQSLSSTTSTVEVPPALKKLVPDKK----AGPYEFTDGC 204
Query: 435 GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELT 494
G +S AR G V P + T
Sbjct: 205 GMMSEGLAR-----------------------GGDVIPFPHAH----------------T 225
Query: 495 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI----LTDPLKAQE 550
+ V+ +++ PC+LNRQ I+LL TLG+ D++ E++ V LD + L+DP +A+
Sbjct: 226 PMQVIQYARQLPCYLNRQFITLLGTLGVPDKVIEERYSAMVSTLDKVLRTMLSDPAEAEM 285
Query: 551 AL----ELMSPG----ENTNILKELLI---CGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
AL + S G + L E L G EPFL +L+ R +++LR +T
Sbjct: 286 ALVRYYNITSGGKTGRKQVGPLWEALAMVRAGINIRTEPFLQSVLRATRDKAMIDLRHRT 345
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQV 624
RIF+P+ ++G +DET L GQ
Sbjct: 346 RIFVPDASCLLGIVDETGLLQPGQA 370
>gi|336367253|gb|EGN95598.1| hypothetical protein SERLA73DRAFT_162413 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379975|gb|EGO21129.1| hypothetical protein SERLADRAFT_417518 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1199
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 162/575 (28%), Positives = 266/575 (46%), Gaps = 68/575 (11%)
Query: 168 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH---ALDKLYHLKEC 224
L + + F++ L+ NG ++ LD RAP+ EH A + L + E
Sbjct: 324 GLDWLVAFQVEALLHNGLLSTVELDD--------LRAPIDRLVQEHRKLAGEILRYFTEA 375
Query: 225 CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVL 284
S T + + SK S + G + H V TP+R+ GP I SNRV+
Sbjct: 376 LASRSPNETPRQCFDLVRHSKLKSKLRTSPQGRFFCHHVTFTPTRMLLEGPYIIQSNRVI 435
Query: 285 RHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDR 344
R++ D+F+R+ F DED L+ R + D + R+ L+NG + R
Sbjct: 436 RNYEGYEDHFIRVDFRDEDR-------LNYRWNRELDAL-AFLEPRVGGILKNGFELAGR 487
Query: 345 KFEFLAFSSSQLRESSAWM-----FASRYGLTAAEIREWMGNFRE-IRNVAKYAARLGQS 398
FEFLA+SSS LRE + W + +T+ IR +G+F I + +KYAAR+ Q+
Sbjct: 488 DFEFLAYSSSALREHAVWFVNPFSHPTEGWVTSESIRSGLGDFSGVIFHPSKYAARMAQA 547
Query: 399 FSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV-ASKC------GL 451
FS++ ++ +H + IPD +G F+DG+G +S E + + C G
Sbjct: 548 FSATDPSVKIHKSQWREIPD----LGDETTCFTDGVGTISRELGDMIWGALCEARRDHGE 603
Query: 452 KDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY---ESELTKLDVL-AWSKYQP 506
PSA+QIR+ GYKG+VA D + ++ LR SM K+ E+E ++++ A+ +
Sbjct: 604 HTIKPSAYQIRFLGYKGMVAIDAQLTGVQMCLRPSMNKFLGKETEYAEIEIARAFERPNL 663
Query: 507 CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNI 563
LNR L+ +L G + F K Q E + + + + LE + G N + I
Sbjct: 664 PHLNRPLVMVLEDRGAKRDSFVKLQDEVIAETRMANDSIERFRSLLEEHNLGHNFRLSPI 723
Query: 564 LKELLICGYKPDAE--------PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 615
L++L G + A+ PFL+ L ++ + RI IP ++G DE
Sbjct: 724 LQQLNALGLELKADQTKEAMDSPFLAQTRSCAINHVLRSVKHEARIQIPKSYMLVGVADE 783
Query: 616 TRT-LNYGQ--VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 672
+N G+ VF G Y + + + ++GL V++++P +HPGDV+
Sbjct: 784 GPAYVNAGRDNVFCLPEGKIYACVQKPGDM-------EPIWLEGLCVISRSPVIHPGDVQ 836
Query: 673 VLKAVNVPALH------HMVDCVVFPQKGMRYILT 701
+ A+ P + H+ + VV P G R + +
Sbjct: 837 RVYAIGKPPANKLCLFSHLKNVVVLPSVGARSLAS 871
>gi|402218300|gb|EJT98377.1| RdRP-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 908
Score = 176 bits (447), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 149/513 (29%), Positives = 250/513 (48%), Gaps = 77/513 (15%)
Query: 235 QYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNF 294
QY +SP I + D ++ VTP+ ++ GP ++ SN VLR + F
Sbjct: 112 QYTALTMHGQSEASP-IPICDIMIRACAAIVTPTCIHLEGPYLDQSNSVLRAYPEHQHYF 170
Query: 295 LRISFIDED-LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
LR+SF ED L + D+ +R + RI + LR G+ + R FEFLA+S
Sbjct: 171 LRLSFASEDHLPLYNDRDVD---------SRLFVGYRIGTILREGVTLAGRHFEFLAYSL 221
Query: 354 SQLRESSAWMFA----SRYGL-TAAEIREWMGNFREIRNV-AKYAARLGQSFSSSKETLS 407
S LR+ S WM A GL TA +R+ +G+F + A+Y ARL Q+F++++ ++
Sbjct: 222 SALRQHSVWMVAPFDHPVLGLMTANRVRDRLGDFSRVSKCPARYGARLAQAFTATEPSIV 281
Query: 408 VHMDEIEIIPDVKIEIGK-TKYVFSDGIGKVSAE-----FARKVASKCGLK---DNPPSA 458
+ + I IPD +I K K +F+DG+G +S E + R V ++ L+ D P +
Sbjct: 282 LKPENIVEIPD---KINKANKLIFTDGVGGMSLELLEGTWKRLVENRPHLRTKIDFPATV 338
Query: 459 FQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYES------ELTKLDVLAWSKYQPCFLNR 511
FQ R GG KG+++ +P + +R SM K+++ E+ K ++ + +P FLNR
Sbjct: 339 FQFRLGGNKGLLSLNPLLPGLVMQVRPSMNKFDAPDSLGLEIAK----SFERPRPFFLNR 394
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL--- 568
I LL + G+ ++F QR AV+ ++ + ++A E G T ++ +L
Sbjct: 395 PFIMLLESRGVHADVFLTLQRNAVKAVEDSKSSLIRASIMTETYGLG-GTFWIRLILRNI 453
Query: 569 --ICGYKPDA--------EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 618
I G +A +PFL ++ +A+ L E+R + RI +PN +++G DE
Sbjct: 454 HDILGLDFEAGQGLTTFYDPFLKHIIDVGKANALREIRFRARIPVPNSWTLIGVADEHDV 513
Query: 619 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
L +++ I G + H ++G +V K+P L PGD + + +
Sbjct: 514 LGKNEIYACIHKPGDPEPHW---------------IEGPAIVTKSPSLGPGDAQFVTGIG 558
Query: 679 VP--------ALHHMVDCVVFPQKGMRYILTML 703
P + + +CVVF +G+R I +ML
Sbjct: 559 RPPPDCPFMLGPYPLKNCVVFSCRGVRPIPSML 591
>gi|403413304|emb|CCM00004.1| predicted protein [Fibroporia radiculosa]
Length = 1503
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 145/496 (29%), Positives = 243/496 (48%), Gaps = 67/496 (13%)
Query: 249 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 308
P I L G H V TP+R+ GP ++ SNRV+R + D+FLR+ F DED
Sbjct: 398 PPIPLPPGHFLCHHVTYTPTRMILEGPYVSQSNRVIRRYPDHQDHFLRVDFRDEDR---- 453
Query: 309 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY 368
L R + D + + ++ R+ LR+G + R FEFLA+S S LRE + W Y
Sbjct: 454 ---LQYRWAREVDGS-SLLFDRVGGVLRSGFELAGRYFEFLAYSQSALREHAVWFINPFY 509
Query: 369 -----GLTAAEIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 422
+TA IR+ +G+F IR +KYAARL Q+F+++ ++ + + E +PD
Sbjct: 510 HPEEGHITAQTIRDSLGDFSGVIRQPSKYAARLAQAFTATDPSVRITRGQWEEMPD---- 565
Query: 423 IGKTKYVFSDGIGKVSAEF----------ARKVASKCGLKDNPPSAFQIRYGGYKGVVAA 472
+G+ Y F+DG+G +S E +R + GLK PSA+QIR+ GYKG+V
Sbjct: 566 LGEKPYEFTDGVGTISTELGNLIWDALCASRPENRRRGLK---PSAYQIRFLGYKGMVVI 622
Query: 473 DPT-SSKKLSLRDSMRKY---ESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIF 527
D K+ LR SM K+ + +L ++++ A+ + +LNR LI +L G+ + F
Sbjct: 623 DEQLQGIKMHLRPSMNKFRAHDDDLAEIEIARAFERPGTSYLNRPLIMILEDRGVDKKAF 682
Query: 528 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTN---ILKEL--LICGYKPD------A 576
Q A + K+ L+ + G++ IL+ L + G+K +
Sbjct: 683 INLQERAKTDIYTASDSITKSVSMLKAHTLGKSYGLDFILQSLQNIGMGFKHEKSIHVLQ 742
Query: 577 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 636
+PF+ ++ + L +++ RI IP+ ++G DE G +V AG +
Sbjct: 743 DPFIERLIHYSKNHVLRDIKHGARIPIPDSYLLVGVADE------GPAYVH---AGMENV 793
Query: 637 ----HGES-SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHM 685
GE + ++ + ++G VV++++P +HPGDV+ + A+ P ++
Sbjct: 794 FCLKKGEIFACVQNADDPEPTYLKGSVVISRSPVVHPGDVQRVWAIGSPPPDKVCFFRNL 853
Query: 686 VDCVVFPQKGMRYILT 701
+ VV P G R + +
Sbjct: 854 KNVVVLPSAGGRSLAS 869
>gi|322712330|gb|EFZ03903.1| rna-dependent rna polymerase [Metarhizium anisopliae ARSEF 23]
Length = 1114
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 146/467 (31%), Positives = 232/467 (49%), Gaps = 42/467 (8%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
G V + VTP+R+ GP++ NRVLR F D+FLR++F DED DLS
Sbjct: 302 GRALVLKALVTPTRIVLRGPDLETKNRVLRMFPGKSDHFLRVTFGDED-----GEDLSYG 356
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG--LTAA 373
+ D I+ L G+ + R+FEFLAFS S LR SAW + G LT
Sbjct: 357 DRTCND----DIFEHYRRILLRGLTVAGRRFEFLAFSHSSLRSHSAWFCSPFVGQSLTVQ 412
Query: 374 EIR---EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKY 428
+ R + +G F+ IR AK AAR+GQ+FS + LS+ I + I DVK G
Sbjct: 413 DCRSIVKSLGVFQNIRIPAKCAARIGQAFSETPIALSLSQRGIRLQYIDDVKNSAGTR-- 470
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLR-DSM 486
VFSDG+G +S + ++V + P+ QIR G KG+++ D K + +R +SM
Sbjct: 471 VFSDGVGTISIDALQEVWDCLPERLGRPTCIQIRIAGVKGMLSLDSQLRGKYICIRSESM 530
Query: 487 RKYESELTKLDVLA----WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 542
K++S+ LDVL S+ LNRQ++ +L +GI F Q +A+R ++
Sbjct: 531 MKFKSQ--DLDVLGICDVGSRPLRFTLNRQIVKILEDMGIHHNWFLAWQDKAIRNFLSVA 588
Query: 543 TDPLKAQEALELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT 599
+ + L G + ++++L G + FL ++ ++L L+ K
Sbjct: 589 SSTRHTRAFLRQYEVGTSLRLPELIEKLEENGIDYREDDFLRSVVGQAVLAELRFLKYKA 648
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
RI + ++ G +DET L GQ++V A + G + + ++ +G +
Sbjct: 649 RIPVSKAVTLFGVMDETGFLQEGQIYVTYDVADHL---GATGIEAAP-------AKGRAL 698
Query: 660 VAKNPCLHPGDVRVLKAVNVP---ALHHMVDCVVFPQKGMRYILTML 703
V ++P LHPGD++ ++ V P AL + +C+VF +G R + +ML
Sbjct: 699 VTRSPALHPGDIQYVEMVTPPFGHALLELRNCIVFSSQGSRDLPSML 745
>gi|409039622|gb|EKM49158.1| hypothetical protein PHACADRAFT_201955 [Phanerochaete carnosa
HHB-10118-sp]
Length = 908
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 133/460 (28%), Positives = 213/460 (46%), Gaps = 59/460 (12%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-----KIHSTD 311
L V R VTP+R P SN +LR +D FLR+ F+D+D D + D
Sbjct: 163 LTAVRRCLVTPTRCVLNPPTWETSNEMLRDHEHYVDRFLRVQFVDDDGDFPVVGETLVID 222
Query: 312 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLT 371
+G R ++ R+ L +G++I R + F FS SQ +E WM A T
Sbjct: 223 DEMQG-------REGVFARVRRALSDGLVIAGRHYVFATFSESQAKERGCWMIAEDGPFT 275
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 431
+ + MG+ + R +AK+AAR S K T++ +D+I+ + YVF+
Sbjct: 276 VSAVLAKMGDLSQERIIAKHAARQRGSMPK-KITINRALDDIK----------RNSYVFT 324
Query: 432 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA---DPTSSKKLSLRDSMRK 488
DG+G S A+ A G + P SA QIR GG KGV+A + ++ LR SM K
Sbjct: 325 DGVGHFSHSLAQACAKTLGYRLIPVSAAQIRIGGAKGVLAVVQDETLGENEVRLRPSMIK 384
Query: 489 YESELTK--LDVLAWSKYQPCFLNRQLISLLSTLGIW-DEIFE--KKQREAVRQLDAILT 543
+ + L+++ + Y LNRQ I L+ G+ D +F+ +++ ++ L++
Sbjct: 385 LQGVKPEPTLNIIKVATYSKATLNRQAILLMEDRGVSSDTLFDIFTQEKRRIQGLESGF- 443
Query: 544 DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
DP++ T L L K +P + + + L +L+ K I +
Sbjct: 444 DPMRLASV--------TTFPLARALRHDIK---DPVVQNVTSLVKCRLLCDLKWKAWIEL 492
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
+MG DET +L G++F QI +G +++ + +N
Sbjct: 493 SESAYLMGIADETDSLQEGEIFCQIHPSG----------------SDPQVIEARCTIYRN 536
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
PCLHPGDVR++ AV+ P L H+ + +VF +G R + ML
Sbjct: 537 PCLHPGDVRLVTAVDCPKLRHLRNVIVFSTRGCRDLPNML 576
>gi|66802840|ref|XP_635263.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60463423|gb|EAL61608.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2403
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 134/449 (29%), Positives = 218/449 (48%), Gaps = 58/449 (12%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS-TDLSPRGSS 318
+ V +TPSR F P + S R +R F NF+ + ++E L+ + + P +
Sbjct: 1208 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESLEPLQGVNNKHPLHEN 1265
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
RI L GIL+G + + + S+SQLRE S+W +++ G +I W
Sbjct: 1266 -----------RIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 1312
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
G + NV K+ +G FS++ T+++ + I I D I + +VF++G G++
Sbjct: 1313 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQD----ITRNTHVFTEGCGEIG 1367
Query: 439 AEFARKVASKCGLKDNPPS--AFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE- 490
E A+ + + PS A+Q+R GG KG++ A DP+ + +R SM K+
Sbjct: 1368 PELAKHLNENYNFR---PSTCAYQVRIGGNKGMLVVNNQAPDPSG---IYIRPSMVKFNP 1421
Query: 491 ----SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D
Sbjct: 1422 IVCGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTN 1481
Query: 547 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 606
+++A+ P L + +P++ +L + K+ ++ K I I +
Sbjct: 1482 ASKQAIVEFFPDITEGELYQ----------DPYIRRILISLYKLKMERIQQKCHIEIKDS 1531
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
R ++G D T +L VFVQ+ G R ++ +++GLV+V KNPC
Sbjct: 1532 RMLLGVCDPTNSLPPNTVFVQLEEEDEDDDDG--------RKYEK-VIEGLVMVIKNPCT 1582
Query: 667 HPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
HPGDVR LKAV+ L H+ + +VF KG
Sbjct: 1583 HPGDVRYLKAVDNLRLRHLRNVLVFSTKG 1611
>gi|14475571|emb|CAC41975.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1964
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 219/449 (48%), Gaps = 58/449 (12%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
+ V +TPSR F P + S R +R F NF+ + ++E L+ + +
Sbjct: 765 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIMVKIVNESLEPLQGVN-------- 814
Query: 320 TDITRTRIY-TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
+ ++ RI L GIL+G + + + S+SQLRE S+W +++ G +I W
Sbjct: 815 ---NKHPLHENRIKPILEGGILVGGKIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 869
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
G + NV K+ +G FS++ T+++ + I I D I + +VF++G G++
Sbjct: 870 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQD----ITRNTHVFTEGCGEIG 924
Query: 439 AEFARKVASKCGLKDNPPS--AFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE- 490
E A+ + + PS A+Q+R GG KG++ A DP+ + +R SM K+
Sbjct: 925 PELAKHLNENYNFR---PSTCAYQVRIGGNKGMLVVNNQAPDPSG---IYIRPSMVKFNP 978
Query: 491 ----SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D
Sbjct: 979 IVCGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTN 1038
Query: 547 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 606
+++A+ P I + +P++ +L + K+ ++ K I I +
Sbjct: 1039 ASKQAIVEFFPD----------ITEGELYQDPYIRRILISLYKLKMERIQQKCHIEIKDS 1088
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
R ++G D T +L VFVQ+ G R ++ +++GLV+V KNPC
Sbjct: 1089 RMLLGVCDPTNSLPPNTVFVQLEEEDEDDDDG--------RKYEK-VIEGLVMVIKNPCT 1139
Query: 667 HPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
HPGDVR LKAV+ L H+ + +VF KG
Sbjct: 1140 HPGDVRYLKAVDNLRLRHLRNVLVFSTKG 1168
>gi|406695038|gb|EKC98353.1| RNA-dependent RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1018
Score = 174 bits (441), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 142/478 (29%), Positives = 235/478 (49%), Gaps = 49/478 (10%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
+V + V VTP+RV P+ SN V R + +D +R+ F DE ++++ +
Sbjct: 376 IVMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDEG-ERLNVQKFTKPA 434
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
A + R+ L+ GI + ++ +A S SQ ++ + W F + E+
Sbjct: 435 DDA--CPEKGLMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMW-FIDHTVIDRPELS 491
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKE-TLSVHMDEIEIIPDVKIEIGKTKYVFSDGIG 435
WMG +E + VAK+AARLG FS+S+ L V + ++ ++ + + F+DG G
Sbjct: 492 RWMGQVKE-QVVAKHAARLGLPFSASRAVALKVTVSDL-------ADVFRNDHCFTDGCG 543
Query: 436 KVSAEFARKVASKCGLK---DNPPSAFQIRYGGYKGVVAADP--TSSKKLSLRDSMRKYE 490
+ R+ A K PSA Q R GG KGV+A P + ++ +R S K+E
Sbjct: 544 VAGIDVMRQAARSMNNKRKTGEAPSALQFRLGGAKGVLAYWPGMAGNDEILMRPSQTKFE 603
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD-----AILTDP 545
S L +L+V+ +KYQ FLNRQ I+++S G+ D +FE+ EA + ++ A+L D
Sbjct: 604 SRLKELNVVRIAKYQAAFLNRQFINIMSACGVPDALFEQLFVEATQAIEGLPDRAVLRDL 663
Query: 546 LKAQEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
K +L+ + T + +++ G+ + P + + + A L +L+ + R+ +
Sbjct: 664 TKD----DLVLFQQYTEFPMVQVIDAGFARN--PMIQDLARLVEARALQDLKWRARVKLD 717
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 664
G ++G DET L G+VFVQ + + + + +V G VVV + P
Sbjct: 718 MGVYLIGVADETGLLKEGEVFVQ---------------YQVTENDEPVVVTGAVVVCRAP 762
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR----YILTMLKPRLLWYELNSSHAL 718
LHPGDVR +AV+ P L H+ + VVF KG R + + L P L Y L + L
Sbjct: 763 ALHPGDVRTARAVDHPQLRHLKNVVVFSIKGARPLPNILHSHLGPAFLRYNLANCRRL 820
>gi|388857678|emb|CCF48827.1| related to RNA-dependent RNA polymerase [Ustilago hordei]
Length = 1462
Score = 174 bits (440), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 139/475 (29%), Positives = 226/475 (47%), Gaps = 63/475 (13%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V+ V +TP+R+ GP ++ SNRVLR F +F+R++F DED D+ + G +
Sbjct: 457 VYHVAITPTRMLLEGPFMDASNRVLRLFPEFGSHFVRVAFCDEDGDRFPVSRHDLHGIDS 516
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAE 374
R RI L++GI I RKFE LA+S S L W F + G A
Sbjct: 517 ESFVRERIG----DPLKHGIAIAGRKFEALAWSGSGLGSHHCWFVTAFTDKDGNLWNAER 572
Query: 375 IREWMGNFREI-RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI----------EI 423
IR+ +G+F+ + R A+ ARL Q+FS++ T+ ++ D ++I+ D E
Sbjct: 573 IRQSLGDFQGVDRYPARLGARLSQAFSATSSTIKINDDWVKIVTDDHSNCAMPSNGPNER 632
Query: 424 GKTKYVFSDGIGKVSAEFARKVASK-CGLKD-------------NPPSAFQIRYGGYKGV 469
K Y+ +DG+G++S E + + C K+ PSA Q RYGG KGV
Sbjct: 633 EKQFYLLTDGVGEISRELRDDIWRELCSAKNMLREWQLSQQDARRIPSAIQFRYGGAKGV 692
Query: 470 VAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQ--PCFLNRQLISLLSTLGIWDEI 526
+ +P K + +R SM K+ + + +A + + P LNR LI+ L LG+ ++
Sbjct: 693 LCLNPQLRGKVMKVRHSMIKFSAPKHRDLEVATTSFHPLPARLNRPLINALEDLGVPADV 752
Query: 527 FEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL----ICGYKPD---AEPF 579
F Q +AV D A + + + + + K I G PD +
Sbjct: 753 FVSLQNKAVESAQLARKDFKHASQLMRSFALSDTAEVHKLFHRLDSILGITPDNLHHDSI 812
Query: 580 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE 639
L+ + A+ L +L+ K RI + +G +++G +DE L ++FVQ+
Sbjct: 813 LNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFNYLGKNEIFVQV----------- 860
Query: 640 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH---HMVDCVVF 691
+ Q I++G V++ ++P +HPGDVR++ AV P H + + VVF
Sbjct: 861 ----NDKEDGQYRIIEGRVMIGRSPTIHPGDVRIVTAVKPPPTHPLRQLRNVVVF 911
>gi|409051493|gb|EKM60969.1| hypothetical protein PHACADRAFT_168316 [Phanerochaete carnosa
HHB-10118-sp]
Length = 968
Score = 173 bits (439), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 155/540 (28%), Positives = 253/540 (46%), Gaps = 78/540 (14%)
Query: 217 KLYHLKECCYEPSRWLTDQY----RKYMTSRSKP--SSPAISLDDGLVYVHRVQVTPSRV 270
K++ + + P+ +TD + R+Y + K P + D L V VTP+
Sbjct: 385 KMFGYTDDSHSPTESITDLFSRCEREYAPVKRKRLRGPPNLDTFDCL----HVTVTPTTH 440
Query: 271 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR 330
GP SNRV+R + + D F+R++F+DE TDL R D R I R
Sbjct: 441 RPEGPYPERSNRVMRTYSNNHDCFVRVNFVDE-------TDLQFRFDREVD-GRAFIKRR 492
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAW-----MFASRYGLTAAEIREWMGNFREI 385
+ L NGI++ R FEFLA+S S L+E + W + + A I +G+F
Sbjct: 493 VGEVLANGIVVAGRYFEFLAYSQSALKEHAVWFVKEFLLPDGTVVNACTIIAGLGDFTRD 552
Query: 386 RNV----AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF 441
R + A+Y AR+ Q+F+++ +++V +E+ +PD++ G + F+DG+G +S
Sbjct: 553 RQLIYCPARYGARISQAFTATDSSVTVEAEEVIEVPDIEDPTG--TWCFTDGVGTMSVRL 610
Query: 442 ARKV-----ASKCGLK-DNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES-EL 493
AR++ A + G + P A QIR+ G KG+++ D T S + + LR SM K+E+
Sbjct: 611 AREIWKVLAARRRGSRWQTYPRALQIRFQGSKGMLSVDHTLSGRAICLRPSMIKFEALNS 670
Query: 494 TKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
+++V A+++ P +LNR LI +L LG+ E+F+ Q AV + KA L
Sbjct: 671 NQIEVARAFNRPGPFYLNRPLIMILEHLGVQHEVFQDLQDAAVMDAQQSVESLEKAARLL 730
Query: 553 ELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFRASKLL-ELRTKTRIFIPNGRS 608
E G + T++ L P E + F + +L EL+ RI +PN +
Sbjct: 731 ETFGLGASFRLTSVFLSLHKLAVGPLTEDNFWRKMMDFAVNHVLRELKHHARIPVPNAWN 790
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
++G D L +VF G Y G ++ + G V+V ++P +HP
Sbjct: 791 LVGVADVHGYLEEHEVF----GCIY-PTDGTGPIY----------LDGRVLVTRSPTIHP 835
Query: 669 GDVRVLKAVNVPA------LHHMVDCVVFPQKGMR---------------YILTMLKPRL 707
GDV+V++ + P + + +VF KG R Y +TML P L
Sbjct: 836 GDVQVVQGIGRPPPGSPFERESLRNTLVFSVKGTRPLPSYLGGGDLDGDEYRVTMLDPLL 895
>gi|242221257|ref|XP_002476381.1| predicted protein [Postia placenta Mad-698-R]
gi|220724386|gb|EED78433.1| predicted protein [Postia placenta Mad-698-R]
Length = 1141
Score = 173 bits (439), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 140/473 (29%), Positives = 229/473 (48%), Gaps = 56/473 (11%)
Query: 262 RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATD 321
RV VTP+ ++ GP+ SNRV R + NFLR++F+DE T L R D
Sbjct: 374 RVIVTPTCLHLEGPDPERSNRVFRRYPGQEQNFLRVTFVDE-------TRLMYRFDREVD 426
Query: 322 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR----- 376
R I R+ L G+ I R FEFLA+S S L+E + W E+R
Sbjct: 427 -GRGFINRRVRHMLVQGLTIAGRHFEFLAYSQSALKEHAVWFVTPFRDPDGREVRASTII 485
Query: 377 EWMGNFRE------IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
+G+FR I A+YAAR+ Q+F+++ ++SV ++E+ PD+K G +Y F
Sbjct: 486 ASLGSFRPAFEPQLIYCPARYAARISQAFTATDSSISVELEEVFYDPDIKDNTG--QYCF 543
Query: 431 SDGIGKVSAEFARKVASKCGLKDNPPSA-------FQIRYGGYKGVVAAD-PTSSKKLSL 482
+DG+G++S AR ++S+ K FQIR+ G KG+++ D S + + L
Sbjct: 544 TDGVGRISPALARAISSELRAKKRRARRARTYTRLFQIRFMGSKGMLSVDYQLSDRSIFL 603
Query: 483 RDSMRKYES--ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
R SM K+++ L A+ K +LNR LI LL LG+ E+FE Q +AV+ +
Sbjct: 604 RPSMIKFDAPDSLNVEIAQAFDKPGKYYLNRPLIMLLEGLGVPYEVFEALQDDAVQDAEG 663
Query: 541 ILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFRASKLL-ELR 596
+ + LE G + ++ + + G +P +E + F + +L EL+
Sbjct: 664 AVHSLESSARLLEAYGLGASFRLSSTMVNMHRLGLRPLSEDIFWQQMMDFAVNHVLRELK 723
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
RI +P+G +++G D L G++F + S + ++G
Sbjct: 724 HHARIPLPDGWTLVGVADVHGYLEEGEIFACV---------------DSPDLLEPIYLEG 768
Query: 657 LVVVAKNPCLHPGDVRVLKAVNVP----ALHH--MVDCVVFPQKGMRYILTML 703
V++++P +HPGDV+++ A+ P H + + VVF KG R + + L
Sbjct: 769 PTVISRSPTIHPGDVQLVHAIGRPPPGSPFEHESLRNGVVFSIKGERPLPSCL 821
>gi|343428005|emb|CBQ71530.1| related to RNA-dependent RNA polymerase [Sporisorium reilianum
SRZ2]
Length = 1505
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 145/466 (31%), Positives = 226/466 (48%), Gaps = 62/466 (13%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V V +TP+R GP ++ SNRVLR F +FLR++F DED D+ + R A
Sbjct: 466 VFHVTITPTRTLLEGPFMDASNRVLRLFPEFGSHFLRVAFCDEDGDRFPVS----RHDFA 521
Query: 320 TDI-TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAA 373
DI + + + RI + L+ GI I R+FE LA+S S L W F + G A
Sbjct: 522 DDIDSESFVRERIGTPLKEGIDIAGRRFEALAWSGSGLGSHHCWFVTAFTDKDGKWWNAE 581
Query: 374 EIREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPD-----------VKI 421
IR +GNF + N A++ ARL Q+FS++ T+ + D I+I+ D
Sbjct: 582 RIRASLGNFSRVENQPARFGARLSQAFSATSSTIRISDDWIQIVEDDFSHALMPSSNGNG 641
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASK-CGLKD-------------NPPSAFQIRYGGYK 467
K +Y+ +DG+G++S ++ + C +K+ PSA Q R GG K
Sbjct: 642 RSSKQRYLLTDGVGEISRALLNEIWRELCAVKNMRREWTLCEQDAARIPSAIQFRLGGAK 701
Query: 468 GVVAADPT-SSKKLSLRDSMRKYES-ELTKLDVLAWS-KYQPCFLNRQLISLLSTLGIWD 524
GV+ +P K + +R SM K+ + E L+V S P LNR LI+ L LG+
Sbjct: 702 GVLCLNPQLKGKVMKVRHSMIKFSAPEHRDLEVATTSFSALPARLNRPLINALEDLGVPA 761
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQE---ALELMSPGENTNILKEL-LICGYKPD---AE 577
+F Q +AV + +A + L E + + L I G +PD A+
Sbjct: 762 HVFLTLQDKAVESAQSARKCFRRASQLMGTFALSDTAEMHRLFRRLDSIVGIQPDQLPAD 821
Query: 578 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 637
L+ + A+ L +L+ K RI + +G +++G +DE L G++F Q+ +
Sbjct: 822 GILNRLCTIVIAAALGDLKRKARIPV-DGCTLIGVVDEFGFLQKGEIFAQVD-------Y 873
Query: 638 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 683
G+ F++ V+G V+V ++P +HPGDVRV+ AV P H
Sbjct: 874 GKDGSFTA--------VEGRVMVGRSPTIHPGDVRVVNAVVPPRGH 911
>gi|426201566|gb|EKV51489.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1198
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 146/485 (30%), Positives = 239/485 (49%), Gaps = 71/485 (14%)
Query: 254 DDGLVYVH-RVQVTPSRVYFCGPEINVSNRVLRHF-RRDIDNFLRISFIDEDLDKIHSTD 311
+DG Y V +TP+ + GP SNRVLR + ++ ++FLR++F D++ ++ D
Sbjct: 386 EDGSYYQSLHVIITPTTMSLQGPYPEQSNRVLRRYDSKNHESFLRVTFRDDNYLQLR-FD 444
Query: 312 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SR 367
G S I R+ L+ G+ I R F FLA+S S L+E S W +
Sbjct: 445 RDVDGPSF-------IRDRVGRFLKQGLSIAGRTFTFLAYSQSALKEHSVWFVKKFHNAP 497
Query: 368 YG-LTAAEIREWMGNFREIRN-------VAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 419
YG + A I + +G F + A+YAAR+ Q+F+++ + V ++E+ + D+
Sbjct: 498 YGDVDAKTIIDSLGTFDNLSYDPTLKLCPARYAARISQAFTATDAAV-VSVEEVLNLDDI 556
Query: 420 KIEIGKTKYVFSDGIGKVSAEFARKV-------ASKCGLKDNPPSAFQIRYGGYKGVVAA 472
K GK YVF+DG+G +S + AR + K G + P A+Q+R+ G KG+++
Sbjct: 557 KTSDGK--YVFTDGVGTMSQDLARAIWGKLRSAKRKSGRSSDYPHAYQVRFLGSKGMLSI 614
Query: 473 DPT--SSKKLSLRDSMRKYESELTKLD-----VLAWSKYQPCFLNRQLISLLSTLGIWDE 525
D T + ++LR SM K+E+E + A+ + +LNR LI+LL LGI
Sbjct: 615 DHTLNGAHTIALRPSMTKFEAESGSGEQEIEIARAFDRPTAYYLNRPLITLLEGLGIPTN 674
Query: 526 IFEKKQREAVRQLDAILTDPLKAQEALELMS-------PGENTNILKELLICGYKPDAEP 578
+F K Q +AV++ + KA LE P T++ K L G D +P
Sbjct: 675 VFLKFQNDAVQETRSATLTLSKAARLLETHGLGASFRLPATMTSLAK--LGLGSIHD-DP 731
Query: 579 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 638
F +LQ L +L+ RI IP+ +++G D L G+VF +
Sbjct: 732 FYGKLLQIAVHHVLRDLKHHARIPIPDAWTLVGVADVHSYLEEGEVFACVK--------- 782
Query: 639 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFP 692
++R ++GL++++++P +HPGDV+++KA+ VP A + + VVF
Sbjct: 783 -------HQTRGIIFLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTVVFS 835
Query: 693 QKGMR 697
KG R
Sbjct: 836 VKGRR 840
>gi|341880675|gb|EGT36610.1| hypothetical protein CAEBREN_29614 [Caenorhabditis brenneri]
Length = 1669
Score = 172 bits (437), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 149/518 (28%), Positives = 239/518 (46%), Gaps = 109/518 (21%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
+ +G V ++ TP+RV + PE + NRVLR + D LRI+F D+D K+
Sbjct: 499 MREGYQRVRKIIFTPTRVIYVAPETLMGNRVLRRYDHDGTRVLRITFRDDDNQKMR---- 554
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA 372
T+ T T + + + L +GI + R F +L S+SQ+R++ A+ F +Y ++
Sbjct: 555 -------TNKTSTLLEKTVNNYLHSGITVAGRNFGYLGSSNSQMRDNGAY-FMEKY--SS 604
Query: 373 AEIREW----------------------MGNFREIRNVAKYAARLGQSFSSSKETLSVHM 410
++ RE+ +G F I N+ K ARLGQ F+ S+ + V++
Sbjct: 605 SQCREYEAIHHVKPPITYNPKIQAARKNLGRFETIDNIPKMMARLGQCFTQSRLS-GVNL 663
Query: 411 DEIEIIPDVKIEIGKT----KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGY 466
D + + GK +Y FSDG+G +S FA+ V+ PS FQ+ +
Sbjct: 664 DRCTYMTMYDLTGGKNIKRDEYTFSDGVGMMSLRFAQMVSQVMDFGKGVPSCFQV----F 719
Query: 467 KGVVAADPTSSKKLSLRDSMRKYESELT-------------------------------K 495
+A P + L D +RK+ E +
Sbjct: 720 LNPIA--PKTPIFSPLLDMIRKWSLEFALEKPSDDVAWGLNCVFRPSQIKFISKRHPRDQ 777
Query: 496 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 555
++++ +S P LN+ I++L D++ E + E R++ + + L Q L
Sbjct: 778 VEIVKYSSPVPVSLNKPFINIL------DQVSEMQSLECHRRVTNRIEELLDRQMLLFAQ 831
Query: 556 SPGENT---NILKEL----------LICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRI 601
+ T N LKEL G+ +EPF S++ + + S +LR K +I
Sbjct: 832 QMVDETFCRNRLKELPRRVDIDYLRTTWGFTLSSEPFFRSLIKASIKFSITKQLR-KEQI 890
Query: 602 FIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
IP GRSM+G +DET L YGQ+FVQ + +L ++ R ++ G V+
Sbjct: 891 PIPQDLGRSMLGVVDETGRLQYGQIFVQYT--------KNLALKLPPKNAARQVLTGTVL 942
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+ KNPC+ GDVR+ +AV++P LHHM D VVFPQ G R
Sbjct: 943 LTKNPCIVAGDVRIFEAVDIPELHHMCDVVVFPQHGPR 980
>gi|392571578|gb|EIW64750.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1224
Score = 172 bits (436), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 144/499 (28%), Positives = 245/499 (49%), Gaps = 67/499 (13%)
Query: 245 KPSSPAISLDDGLVYVH--RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE 302
KP + A++ D H RV +TP+ + GP SNRV+R + R D+FLR+ F DE
Sbjct: 404 KPLNTALNTADATAPFHCLRVTITPTTMILEGPFPERSNRVMRKYYRSQDSFLRVCFQDE 463
Query: 303 DLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW 362
+ ++ R TD + R+ S L G+ +F+FLA+S S L+E + W
Sbjct: 464 NRLQLRFD----REIDGTDF----VNRRVKSVLLGGLAFPGARFDFLAYSQSALKEHAVW 515
Query: 363 MF---------ASRYGLTAAEIREWMGNFRE-------IRNVAKYAARLGQSFSSSKETL 406
+ + AA I +G FR I A+YAAR+ Q+F+++ ++
Sbjct: 516 FVKPFRHTDDQGYTHFVDAAAIIGSLGTFRNLTFDPELIYCPARYAARISQAFTATDASI 575
Query: 407 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP---------PS 457
++ +I D+K GK + F+DG+G +S + A+ + L++N P
Sbjct: 576 TIDAGQIIFGSDIKDASGKRE--FTDGVGTISPQLAKDIWR--ALQENRRRGRRDRTYPR 631
Query: 458 AFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTK-LDVL-AWSKYQPCFLNRQLI 514
A+QIR+ G KG+++ D T + + +R SM K+ES ++ ++V A+ K P +LNR LI
Sbjct: 632 AYQIRFQGSKGMLSVDYTLPGRSILIRPSMIKFESPDSRNIEVARAFEKPAPYYLNRPLI 691
Query: 515 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICG 571
LL LG+ E+F++ Q AVR + A + ++ LE G + T+++ L G
Sbjct: 692 MLLEGLGVPYEVFQRLQDNAVRDVKAAVESLERSARLLEGHGLGGSFRLTSVMLGLHKLG 751
Query: 572 YKP-DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISG 630
P + E F + L EL+ + RI +P G +++G D L G++FV I
Sbjct: 752 LGPLNNEVFWRQTMDFAINHVLRELKHRARIPVPEGWTLVGVADVHGYLEEGEIFVCID- 810
Query: 631 AGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHH 684
+ R R++ +G +++++P +HPGD +V+ A+ P ++
Sbjct: 811 -------------APDRGGLRYL-EGRTLISRSPTIHPGDAQVVHAIGRPRPGSPFSMES 856
Query: 685 MVDCVVFPQKGMRYILTML 703
+ + VVF KG R + + L
Sbjct: 857 LRNTVVFSIKGKRPLPSCL 875
>gi|409083384|gb|EKM83741.1| hypothetical protein AGABI1DRAFT_66661 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1198
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 145/485 (29%), Positives = 239/485 (49%), Gaps = 71/485 (14%)
Query: 254 DDGLVYVH-RVQVTPSRVYFCGPEINVSNRVLRHF-RRDIDNFLRISFIDEDLDKIHSTD 311
+DG Y V +TP+ + GP SNRVLR + ++ ++FLR++F D++ ++ D
Sbjct: 386 EDGSYYQSLHVIITPTTMSLQGPYPEQSNRVLRRYDSKNHESFLRVTFRDDNYLQLR-FD 444
Query: 312 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SR 367
G S I R+ L+ G+ I R F FLA+S S L+E S W +
Sbjct: 445 RDVDGPSF-------IRDRVGRFLKQGLSIAGRTFTFLAYSQSALKEHSVWFVKKFHNAP 497
Query: 368 YG-LTAAEIREWMGNFREIRN-------VAKYAARLGQSFSSSKETLSVHMDEIEIIPDV 419
YG + A I + +G F + A+YAAR+ Q+F+++ + V ++E+ + D+
Sbjct: 498 YGDVDAKTIIDSLGTFDNLSYDPTLKLCPARYAARISQAFTATDAAV-VSVEEVLNLDDI 556
Query: 420 KIEIGKTKYVFSDGIGKVSAEFARKV-------ASKCGLKDNPPSAFQIRYGGYKGVVAA 472
K GK YVF+DG+G +S + AR + K G + P A+Q+R+ G KG+++
Sbjct: 557 KTSDGK--YVFTDGVGTMSQDLARAIWGKLRSAKRKSGRSSDYPHAYQVRFLGSKGMLSI 614
Query: 473 DPT--SSKKLSLRDSMRKYESELTKLD-----VLAWSKYQPCFLNRQLISLLSTLGIWDE 525
D T + ++LR SM K+E+E + A+ + +LNR LI+LL LGI
Sbjct: 615 DHTLNGAHTIALRPSMTKFEAESGSGEQEIEIARAFDRPTAYYLNRPLITLLEGLGIPTN 674
Query: 526 IFEKKQREAVRQLDAILTDPLKAQEALELMS-------PGENTNILKELLICGYKPDAEP 578
+F K Q +AV++ + KA LE P T++ K L G D +P
Sbjct: 675 VFLKFQNDAVQETRSATLTLSKAARLLETHGLGASFRLPATMTSLAK--LGLGSIHD-DP 731
Query: 579 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 638
F +LQ L +L+ RI +P+ +++G D L G+VF +
Sbjct: 732 FYGKLLQIAVHHVLRDLKHHARIPVPDAWTLVGVADVHSYLEEGEVFACVK--------- 782
Query: 639 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFP 692
++R ++GL++++++P +HPGDV+++KA+ VP A + + VVF
Sbjct: 783 -------HQTRGIIFLEGLLLISRSPTIHPGDVQIVKAIGVPPEGSCFAREPLHNTVVFS 835
Query: 693 QKGMR 697
KG R
Sbjct: 836 VKGRR 840
>gi|392575092|gb|EIW68226.1| hypothetical protein TREMEDRAFT_74213 [Tremella mesenterica DSM
1558]
Length = 1004
Score = 172 bits (435), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 137/460 (29%), Positives = 226/460 (49%), Gaps = 58/460 (12%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR- 315
LV + VQVTP+R+ P SN V R + ID+ +R+ F DE+ D+I D + +
Sbjct: 338 LVLIRTVQVTPTRLLIGAPTPEPSNSVTRRYAGKIDSIIRVQFSDEE-DRIFVQDYTKQV 396
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 375
S D+ + R+ LR G+++G R++ +A SSSQ +E + W F + E+
Sbjct: 397 DSQRPDLG---VMARVRRALRWGLVVGGRRYLPVASSSSQQKEHAMW-FIDNKEIDMLEL 452
Query: 376 REWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIG 435
+ WMG E +AK+AAR+G FS+S+ + +++D IPDV+ + + F+DG+G
Sbjct: 453 QRWMGQVDET-IIAKHAARMGLPFSTSR-IVEINVDIGLQIPDVE----RNGHCFTDGVG 506
Query: 436 KVSAEFARKVASKCGLKD---NPPSAFQIRYGGYKGVVAADPTSSK--KLSLRDSMRKYE 490
E R+ A G ++ + PSA Q R GG KG++A P K ++ +R SM K++
Sbjct: 507 LAGFEVMREAARALGFREGINSTPSAIQFRLGGAKGMLAFWPGRVKDHEVKMRKSMVKFK 566
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
S L L+V+ + I ++ GI +++ +AV + L+ +
Sbjct: 567 SGLKDLNVV------------RFIMIMCANGIPEQLMIDIFNDAVASIKG-----LRERV 609
Query: 551 ALELMSPGENTNI-------LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
A + +S ++ I L L+ G+ + P + + L +L+ + R+ +
Sbjct: 610 ATKTLSRDDHKLISTCSEFPLLALIKAGFHEN--PMILDICSIVETRALQDLKWRARVRL 667
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
P G ++G DET TL G+VF Q + S IV+ V+V +
Sbjct: 668 PTGVFLIGIADETGTLKEGEVFCQ---------------YQESDDTPPVIVESEVIVCRA 712
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
P LHPGDVR AV+ P L H+ + +VF +G R + ML
Sbjct: 713 PALHPGDVRRAFAVDNPYLRHLKNVLVFSVQGERDLPNML 752
>gi|409079686|gb|EKM80047.1| hypothetical protein AGABI1DRAFT_72859 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1258
Score = 171 bits (434), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 159/595 (26%), Positives = 273/595 (45%), Gaps = 84/595 (14%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRL-----VDPYRAPVSISCIEHALDKLYHL 221
+ P+ + F + L+ NG + L+S R+ P R + ++
Sbjct: 336 LRFPWPVGFHLESLLHNGRLNTSELESLLPRVRKLCQEHPQRDHAYVDHFLRKYGEVLQD 395
Query: 222 KECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 281
+ P+ RKY+ P +LD + V TP+R+ GP SN
Sbjct: 396 RGPRVSPTDCFEQVKRKYV-------PPKATLD--IFRCRHVTFTPTRMLMEGPYATQSN 446
Query: 282 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILI 341
R++R + + F+R+ F DED L R + D + + R+ + L++G I
Sbjct: 447 RIIRQYSGYEEFFIRVDFRDEDR-------LQYRWNREVD-GASFVRERVGTILKDGFTI 498
Query: 342 GDRKFEFLAFSSSQLRESSAWMFA------SRYG-LTAAEIREWMGNFRE---IRNVAKY 391
R+FEFLA+SSS LRE + W +YG + + +IRE +GNF+ ++ +KY
Sbjct: 499 AGRQFEFLAYSSSALREHAVWFMCPFEHHDPKYGRVDSMKIREQIGNFKGTDLMKQPSKY 558
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPDVK---IEIGK-TKYVFSDGIGKVSAEFARKV-A 446
AARL Q+F++++ ++S+ DE E I D+K E GK Y+F+DG+G +S K+ A
Sbjct: 559 AARLAQAFTATEASVSIKRDEWEEIEDIKPPNFEDGKPNPYLFTDGVGSISKSLGDKIWA 618
Query: 447 SKC------GLKDNPPSAFQIRYGGYKGVVAADPT-----SSKKLSLRDSMRKY---ESE 492
C G PSA+QIR+ GYKGVVA D + K + LR+SMRK+ +
Sbjct: 619 ELCSNRRDHGENSIQPSAYQIRFLGYKGVVAVDEQLDKTGAGKHMRLRNSMRKFLVVNDD 678
Query: 493 LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 551
+ +++ A++ C+LNR L+ LL LG+ + F Q + V + I +
Sbjct: 679 VAPIEIAQAFAHPNRCYLNRPLVMLLEDLGVNVDAFLTLQDKEVAKARTIHDSIDRFLSV 738
Query: 552 LELMSPGEN---TNILKELLICGYK-----PDA----EPFLSMMLQTFRASKLLELRTKT 599
+ G + + ++K+L G + PD PFL + + + +++
Sbjct: 739 ISEHGLGRSFRFSYLVKQLQGLGLEINSKDPDKLNVDTPFLKQVREVAMMDVMRDIKHSA 798
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF-----SSSRSRQRFIV 654
RI +P+ ++G DE G +V AG+ ++ F S + +
Sbjct: 799 RILVPDSHLLVGIADE------GPAYV---SAGFENVYCLPPGFIYACVQESPDGKAEWL 849
Query: 655 QGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHMVDCVVFPQKGMRYILTML 703
+G +V ++P H GDV+ ++A+ P H+ + +V +G R + + L
Sbjct: 850 EGHCLVTRSPVAHIGDVQRVRAIGKPPQGKLCLFSHIKNALVMSSQGNRSLASCL 904
>gi|426198551|gb|EKV48477.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1258
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 145/508 (28%), Positives = 245/508 (48%), Gaps = 72/508 (14%)
Query: 249 PAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIH 308
P +LD + V TP+R+ GP SNR++R + + F+R+ F DED
Sbjct: 416 PKATLD--IFRCRHVTFTPTRMLMEGPYATQSNRIIRQYSGYEEFFIRVDFRDEDR---- 469
Query: 309 STDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA--- 365
L R + D + + R+ + L++G I R+FEFLA+SSS LRE + W
Sbjct: 470 ---LQYRWNREVD-GASFVRERVGTILKDGFTIAGRQFEFLAYSSSALREHAVWFMCPFE 525
Query: 366 ---SRYG-LTAAEIREWMGNFRE---IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPD 418
+YG + + +IRE +GNF+ ++ +KYAARL Q+F++++ ++S+ DE E I D
Sbjct: 526 HHDPKYGRVDSMKIREQIGNFKGTDLMKQPSKYAARLAQAFTATEASVSIKRDEWEEIED 585
Query: 419 V---KIEIGK-TKYVFSDGIGKVSAEFARKV-ASKC------GLKDNPPSAFQIRYGGYK 467
+ K E GK Y+F+DG+G +S K+ A C G PSA+QIR+ GYK
Sbjct: 586 IKPPKFEDGKPNPYLFTDGVGSISKSLGDKIWAELCSNRRDHGENSIQPSAYQIRFLGYK 645
Query: 468 GVVAADPT-----SSKKLSLRDSMRKY---ESELTKLDVL-AWSKYQPCFLNRQLISLLS 518
GVVA D + K + LR+SMRK+ ++ +++ A++ C+LNR L+ LL
Sbjct: 646 GVVAVDEQLDKTGAGKHMRLRNSMRKFLVVNDDVAPIEIAQAFAHPNRCYLNRPLVMLLE 705
Query: 519 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYK-- 573
LG+ + F Q + V + I + + G + + ++K+L G +
Sbjct: 706 DLGVNVDAFLTLQDKEVAKARTIHDSIDRFLSVISEHGLGRSFRFSYLVKQLQGLGLEIN 765
Query: 574 ---PDA----EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 626
PD PFL + + + +++ RI +P+ ++G DE G +V
Sbjct: 766 SKDPDKLNVDTPFLKQVREVAMMDVMRDIKHSARILVPDSHLLVGIADE------GPAYV 819
Query: 627 QISGAGYRQLHGESSLF-----SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
AG+ ++ F S + ++G +V ++P H GDV+ ++A+ P
Sbjct: 820 ---SAGFENVYCLPPGFIYACVQESPDGKAEWLEGHCLVTRSPVAHIGDVQRVRAIGKPP 876
Query: 682 ------LHHMVDCVVFPQKGMRYILTML 703
H+ + +V +G R + + L
Sbjct: 877 QGKLCLFSHIKNALVMSSQGNRSLASCL 904
>gi|367034442|ref|XP_003666503.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
gi|347013776|gb|AEO61258.1| hypothetical protein MYCTH_2071684 [Myceliophthora thermophila ATCC
42464]
Length = 1182
Score = 171 bits (433), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 150/531 (28%), Positives = 238/531 (44%), Gaps = 59/531 (11%)
Query: 168 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRA--------PVSISCIEHALDKLY 219
+LP+++LF + L+ NG + + + RL+ + A PVS+ + D +
Sbjct: 319 SLPFDLLFLLQALMTNGYLHPTTISALAQRLIQRFEAARKTGGPPPVSVDAFKKLFDWID 378
Query: 220 HLKECCYEPSRWLTDQYRKYMTSR-------SKPSSPAISLDDGLVYVHRVQVTPSRVYF 272
+ P + D Y+ + P + + RV VTP+ V
Sbjct: 379 YPSPYG-NPDMFEVDGIMAYLEESESLVREGASPRARIFEETQDRTRIFRVVVTPTSVLL 437
Query: 273 CGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRIL 332
GPE+ NRVLR F + F+R F DE + + + ++ RIY R
Sbjct: 438 HGPELEPMNRVLRKFP-NHSYFIRAQFCDEAGNDLFFN---------SKVSLDRIYNRFK 487
Query: 333 STLRNGILIGDRKFEFLAFSSSQLRESSAWMFA------SRYGLTAAEIREWMGNFREIR 386
S L +GI I R ++ L FS S LR SAW+ A R+G I E +G+F +IR
Sbjct: 488 SILSDGIQIAGRVYKLLGFSHSSLRAHSAWLSAPFFHQNQRHGPDF--IIETLGDFNDIR 545
Query: 387 NVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDGIGKVSAEFARK 444
+ A+ AAR+GQ+FS + L + I++ IPDV+ + VFSDGIG +S +
Sbjct: 546 SPARRAARIGQAFSETPWALDLDEYGIQVSRIPDVE----RNGRVFSDGIGTISHDALSA 601
Query: 445 VASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKLDVLAW-S 502
V P+ QIR+ G KG++A DP +++ +RDSM K+ S +L++ S
Sbjct: 602 VYKVIPKSKGFPTCLQIRWAGAKGMLALDPLLEGRRICIRDSMIKFASNDKQLEICDMAS 661
Query: 503 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN 562
+ P LNRQLI +L + DE F Q +++L I + + E+
Sbjct: 662 RPMPMVLNRQLIKILEDMKAPDEWFLNLQSTELQRLRGISATVYNTASFIRMQKVAESIK 721
Query: 563 I---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 619
+ L++ G + FL ++ +L L+ K+RI + G ++ G +DET L
Sbjct: 722 LHDFLRQTEAMGIDYRQDSFLRGAVEIILLRELRLLKHKSRIPVREGITLFGVMDETGFL 781
Query: 620 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 670
GQV+V R G ++V ++P LHPGD
Sbjct: 782 KEGQVYVTFDTEEGRYAQPPEP--------------GPLLVTRSPALHPGD 818
>gi|66804721|ref|XP_636093.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60464394|gb|EAL62541.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2417
Score = 171 bits (432), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 216/449 (48%), Gaps = 57/449 (12%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS-TDLSPRGSS 318
+ V +TPSR F P + S R +R F NF+ + ++E L+ + + P +
Sbjct: 1193 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIVVKIVNESLEPLQGVNNKHPLHEN 1250
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
RI L GIL+G + + S+SQLRE S+W +++ G +I W
Sbjct: 1251 -----------RIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 1297
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
G + NV K+ +G FS++ T+++ + I I D I + + F++G G++
Sbjct: 1298 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQD----ITRNTHEFTEGCGEIG 1352
Query: 439 AEFARKVASKCGLKDNPPS--AFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE- 490
E A+ + + PS A+Q+R GG KGV+ A DP+ + +R SM K+
Sbjct: 1353 PELAKHLNENYNFR---PSTCAYQVRIGGNKGVLVVNNQAPDPSG---IYIRPSMVKFNP 1406
Query: 491 ----SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D
Sbjct: 1407 IDCGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTN 1466
Query: 547 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 606
+++A+ P L + +P++ +L + K+ ++ K I I +
Sbjct: 1467 ASKQAIVEFFPDITEGELYQ----------DPYIRRILISLYKLKMERIQQKCHIEIKDS 1516
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
R ++G D T +L VFVQ+ + R ++ +++GLV+V KNPC
Sbjct: 1517 RMLLGVCDPTNSLPPNTVFVQLEEE-------DEDDDDDGRKYEK-VIEGLVMVIKNPCT 1568
Query: 667 HPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
HPGDVR LKAV+ L H+ + +VF KG
Sbjct: 1569 HPGDVRYLKAVDNIRLRHLRNVLVFSTKG 1597
>gi|392597024|gb|EIW86346.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1218
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 142/462 (30%), Positives = 221/462 (47%), Gaps = 58/462 (12%)
Query: 266 TPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRT 325
TP+ GP + SN VLR F + FLR+SF DE+ + D S +++ ++
Sbjct: 433 TPTTQILEGPLPDQSNSVLRRFGHH-ECFLRVSFQDENCAPLRR-DFE---WSISELMKS 487
Query: 326 RIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMG 380
R + L G + RKFEFL +S S LRE S W F + G L AA IR +G
Sbjct: 488 RFRPKFL----KGHRVAGRKFEFLGYSMSGLREHSVWFVAPFQNDRGEWLNAAAIRNLLG 543
Query: 381 NFREI-RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 439
+F E+ + A+ AR Q+FS++ ++ + +EI + D I ++K V +DG +S
Sbjct: 544 DFSELLKRPARLGARWSQAFSTTDPSVVLRQEEIFRVDD--IISPRSKKVMTDGCSSISP 601
Query: 440 EFARKVASK--------CGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYE 490
+ AR + K LK NPPSAFQ R GG KGVV +P K + LR S K+E
Sbjct: 602 DLARNIWEKLRTDRRQLSSLK-NPPSAFQFRLGGAKGVVVQNPDLEGKVVCLRPSQLKFE 660
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTL---GIWDEIFEKKQREAVRQLDAILTDPLK 547
DV + S+ +P +LNR LI+LL + G+ + K Q + + + + +
Sbjct: 661 GSELTFDVQSHSRSRPMYLNRPLIALLEHVAASGLVTRVL-KLQHDDIMEAQGVRSSFKD 719
Query: 548 AQEALELMSPGEN-------TNILKELLICGYKPDAEPFL--SMMLQTFR---ASKLLEL 595
A + LE+ G N+ EL + + + L +++ R L EL
Sbjct: 720 ASKMLEVHGLGAPFRLGSLFHNLSSELNLHVWTSETPRGLRNEIIIDAMRCISTHALREL 779
Query: 596 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 655
+ + I +P ++MG DE LN G++F + H ++
Sbjct: 780 KYRAHIRVPGSYTLMGVSDEWDCLNPGEIFATVRDYRTGVYHA---------------IE 824
Query: 656 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
G V V ++P +HPGD++V+KAV P L H+ + +VF +G R
Sbjct: 825 GPVAVTRSPQIHPGDIQVVKAVRRPELEHLTNVIVFSTRGDR 866
>gi|14475569|emb|CAC41974.1| putative RNA dependent RNA polymerase [Dictyostelium discoideum]
Length = 1883
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 133/449 (29%), Positives = 216/449 (48%), Gaps = 57/449 (12%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS-TDLSPRGSS 318
+ V +TPSR F P + S R +R F NF+ + ++E L+ + + P +
Sbjct: 940 IRDVFITPSRTIFIQPTLQRSCRAVRKFGSS--NFIVVKIVNESLEPLQGVNNKHPLHEN 997
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW 378
RI L GIL+G + + S+SQLRE S+W +++ G +I W
Sbjct: 998 -----------RIKPILEGGILVGGEIYSYAGNSNSQLREYSSWFVSNQIGTHTVKI--W 1044
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
G + NV K+ +G FS++ T+++ + I I D I + + F++G G++
Sbjct: 1045 SG-IEHVDNVRKFFRCIGLMFSTTIPTVTLPQNRIYRIQD----ITRNTHEFTEGCGEIG 1099
Query: 439 AEFARKVASKCGLKDNPPS--AFQIRYGGYKGVV-----AADPTSSKKLSLRDSMRKYE- 490
E A+ + + PS A+Q+R GG KGV+ A DP+ + +R SM K+
Sbjct: 1100 PELAKHLNENYNFR---PSTCAYQVRIGGNKGVLVVNNQAPDPSG---IYIRPSMVKFNP 1153
Query: 491 ----SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
E L++ + S C LNRQ+ISLLSTLG D +F Q + Q+ I+ D
Sbjct: 1154 IDCGDEHRTLEICSVSTTSRCKLNRQVISLLSTLGTQDNVFFALQDHYLNQVAQIVNDTN 1213
Query: 547 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 606
+++A+ P L + +P++ +L + K+ ++ K I I +
Sbjct: 1214 ASKQAIVEFFPDITEGELYQ----------DPYIRRILISLYKLKMERIQQKCHIEIKDS 1263
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
R ++G D T +L VFVQ+ + R ++ +++GLV+V KNPC
Sbjct: 1264 RMLLGVCDPTNSLPPNTVFVQLEEE-------DEDDDDDGRKYEK-VIEGLVMVIKNPCT 1315
Query: 667 HPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
HPGDVR LKAV+ L H+ + +VF KG
Sbjct: 1316 HPGDVRYLKAVDNIRLRHLRNVLVFSTKG 1344
>gi|388851646|emb|CCF54642.1| related to RNA-directed RNA polymerase [Ustilago hordei]
Length = 1557
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 141/468 (30%), Positives = 227/468 (48%), Gaps = 49/468 (10%)
Query: 252 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 311
++DD + + VTP+R+ GP +VSNRV+R + +F R++F +ED D S
Sbjct: 412 TVDDVYSPMLHIDVTPTRILLHGPHYHVSNRVIRSYPNHWHHFARVTFTNEDRDLATSI- 470
Query: 312 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRY 368
R + D + I +R+L+ L +G+ + R ++ LA+SSS + + W F
Sbjct: 471 ---RPNYGFDDSERYIQSRVLNVLLHGLNVAGRHWDLLAWSSSSISTHTVWFVTPFVDNN 527
Query: 369 G--LTAAEIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 425
G + A IR +G+F + I++ A Y ARL Q+FS++ T+SV I PD E G
Sbjct: 528 GQRIDANVIRSRLGDFSDVIKSPALYGARLSQAFSATAHTISVPASHIHAKPDKVSEQG- 586
Query: 426 TKYVFSDGIGKVSAEFARKV------ASKCG-----LKDNPPSAFQIRYGGYKGVVAADP 474
++DG+G++S E +V A G LK PSA Q+R GG KGV+A +P
Sbjct: 587 --MPYTDGVGQISPELMAEVWTSFLAAHGEGRKRKLLKAAAPSAIQMRLGGSKGVLAVNP 644
Query: 475 T-SSKKLSLRDSMRKYESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQR 532
K L +R SM K+ S L+V A ++ +P LNR LI+ L G+ F + Q
Sbjct: 645 RLRGKVLIIRPSMTKFGSPHQDLEVANASTRARPAKLNRPLINALEDRGVPASAFMEIQD 704
Query: 533 EAVRQLDAILTDPLKAQEALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQT 586
EA+ + +D A S G N+ L L + G + F ++ ++
Sbjct: 705 EAITLIGRARSDFQAAARLCSAFSFGTGCNLRSLFQKLHSLGLGGKTVHVDSFFLVIAKS 764
Query: 587 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSS 646
A+ L +++ K RI G +M+G DE L G+VF Q+ S
Sbjct: 765 VTAAALGDMKRKARI-PTRGVTMLGIADEFSLLKEGEVFAQVES------------VESG 811
Query: 647 RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV---DCVVF 691
+ +R +V G ++ ++P + P DV ++K V P H ++ + +VF
Sbjct: 812 KVTRRILV-GRNLIGRSPTVDPADVAMVKCVKPPPGHPLLQLRNVIVF 858
>gi|389746474|gb|EIM87654.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 976
Score = 170 bits (430), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 150/466 (32%), Positives = 223/466 (47%), Gaps = 54/466 (11%)
Query: 265 VTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR 324
+TP+ GP + SN VLR F D F+R+SF DE+ + P G+S ++ R
Sbjct: 185 LTPTSKILEGPLPDQSNSVLRRFGHH-DCFIRVSFQDENHTPLRR---DPSGTSIQELLR 240
Query: 325 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESS---AWMFASRYG--LTAAEIREWM 379
TR S + GI + R FEFL +S S LRE S F S G +TA IR +
Sbjct: 241 TRYK----SAMVKGIPLAGRHFEFLGYSMSGLREHSIIFMQAFESDDGSLMTADRIRSLL 296
Query: 380 GNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
GNF I N A AAR Q+FS+S ++++ EI+ I D + G +F+DG G +S
Sbjct: 297 GNFSHISNKPALLAARWAQAFSASDPSVTLQSAEIQRIGDKRSPSGS---LFTDGCGTIS 353
Query: 439 AEFARKV-------ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYE 490
AR V + PS FQIR GG KG++ DP K + LR S K+E
Sbjct: 354 ESLARDVWKFLQRHRRRAASMRLVPSCFQIRIGGAKGILFQDPNLIGKMVCLRPSQTKFE 413
Query: 491 --SELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
SE LD+ A + +P FLNR LI LL LG+ ++F Q++A ++ L
Sbjct: 414 NDSEALTLDI-ASTSSRPIRMFLNRSLILLLEFLGVKPDVFMALQKDATDAVERARHSFL 472
Query: 547 KAQEALELMSPGENTNI--LKELLICGYKPDAEPFLSMMLQTFRAS-------KLLELRT 597
+A + G + I L L+ K D + Q S L E++
Sbjct: 473 EAAKLFSHHGFGSSFRIASLFNNLVTQLKLDEGDLQGLECQILTKSIEYAATHVLREIKF 532
Query: 598 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 657
+ RI + +++G DE L G++F + R H +S+ +QG
Sbjct: 533 RARIPVHGSWTLLGVSDEWGCLREGEIFATV-----RDEHSGTSVE----------IQGP 577
Query: 658 VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
+++ ++P +HPGDV+++ AV P L H+ + VVF +G R + +ML
Sbjct: 578 MLITRSPQIHPGDVQMVTAVRRPELAHLTNVVVFSCEGERSLPSML 623
>gi|400596582|gb|EJP64353.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 590
Score = 169 bits (429), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 113/361 (31%), Positives = 184/361 (50%), Gaps = 30/361 (8%)
Query: 167 IALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCY 226
I L + + +++ + V G + +D+ F + P + +E+ +D+ L++
Sbjct: 218 IYLDFAVRYRLEVCVTRGYLREHAIDAEFLEKLAALDVPKASQLLEYLVDEEIQLED--- 274
Query: 227 EPSRWLTDQYRKYMTSRSK-PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 285
P + D +Y + K P ++ L + +TP+ + P + SNRV+R
Sbjct: 275 -PLQLFEDARFRYAPIKRKIPYYCSLVL--------KANITPTSLKLNLPNVESSNRVMR 325
Query: 286 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
+ D FLR+ F+ E S ++ + D+ + R+L L GI IG+R
Sbjct: 326 KYNNLHDRFLRVQFLSE----TESNRIAKDRYNNDDV-----WKRLLRALHKGIRIGERT 376
Query: 346 FEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKET 405
+EFLAF +SQLRE S F ++ +IR+W+GNF IRNVAK+ AR+GQ FS+++E
Sbjct: 377 YEFLAFGNSQLREGSVTFFCPTAHVSCDDIRKWLGNFDHIRNVAKFGARIGQCFSTTREV 436
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-DNPPSAFQIRYG 464
V + I I D++ + F+DG+G +SA A+ V + L PSAFQ R G
Sbjct: 437 RGVRVPTIRHIDDIEAK----GECFTDGVGIISALLAQLVVDELELDIVGNPSAFQFRMG 492
Query: 465 GYKGVVAADPTSSKK---LSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
G KGV+A P K + LR S K+ +E L+++ +K LNRQ+I++L LG
Sbjct: 493 GAKGVLAVWPREYAKHMEVCLRKSQIKFSTEANTLEIIKCAKTSTATLNRQIITILEHLG 552
Query: 522 I 522
+
Sbjct: 553 V 553
>gi|159123458|gb|EDP48577.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 809
Score = 169 bits (428), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 124/389 (31%), Positives = 193/389 (49%), Gaps = 49/389 (12%)
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 394
L+ GI++ + F SSSQLR + ++ AE+ E +G+F I+ VAK A R
Sbjct: 109 LKEGIILNGVLYSFYGHSSSQLRSRACYLLRGSKN-EVAELVESLGDFSGIKTVAKKAKR 167
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 454
+G FSS + V E+I D++ + Y F+DG G V A+ AR ++ K +
Sbjct: 168 IGLLFSSCHALMKVPDGTYEVIDDIEF----SGYNFTDGCGLVGAKTARVLSQKLSIISR 223
Query: 455 ----PPSAFQIRYGGYKGVVAADPTSSKK--LSLRDSMRKYESELTK-LDVLAWSKYQPC 507
P+ +QIR+ GYKGVV +P + R SMRK+ + V+ +SK QP
Sbjct: 224 NTRYHPAVYQIRFKGYKGVVMLEPQMPPQYWFQFRRSMRKFSGIGDRSFAVVEYSKTQPA 283
Query: 508 -----------------FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
+LN ++I LL TLG+ E+F +KQ+E ++L +T+P
Sbjct: 284 TPLFYSLPLMVQPYTYGYLNDEVILLLHTLGVSAEVFLRKQKEHFQRLQESVTEP---TV 340
Query: 551 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRS 608
A + ++ ++L++ G + + S++ + K+L R K RI +P R
Sbjct: 341 AFTFLCSLNRFDLAEKLVLHGIERVSGALRSLVADEHK--KMLNKREDQKCRILVPESRL 398
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
+ G D L G+ F++++ ++G R R IV VVV +NPCLHP
Sbjct: 399 VFGVCDPRGVLQEGECFLRVTD----DMNG---------GRPRTIVGCEVVVTRNPCLHP 445
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GD+R LKAV+ P L H+ DC+VF KG R
Sbjct: 446 GDLRKLKAVDRPELSHLRDCIVFAVKGER 474
>gi|395334239|gb|EJF66615.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1225
Score = 169 bits (428), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 148/487 (30%), Positives = 239/487 (49%), Gaps = 63/487 (12%)
Query: 248 SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI 307
+PA+ H V +TP+ + GP SNRV+R + ++ + FLR+SF DE+
Sbjct: 415 APAVDAPATFQCFH-VSITPTTMILEGPFPERSNRVIRMYWQNEECFLRVSFQDENR--- 470
Query: 308 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---F 364
L R D R+ I R LR+GI I F FLA+S S L+E + W F
Sbjct: 471 ----LQFRFDREVD-GRSFINRRFRGVLRDGITIAGAHFSFLAYSQSALKEHAVWFVKPF 525
Query: 365 ASRYG------LTAAEIREWMGNFRE------IRNVAKYAARLGQSFSSSKETLSVHMDE 412
R G + A I E +GNFR I A+YAAR+ Q+F+++ +++V +D+
Sbjct: 526 RHRDGHGVECYVDATTIIENLGNFRVSFDTTLIHCPARYAARIAQAFTATDASITVDVDQ 585
Query: 413 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV---ASKCGLKDNP----PSAFQIRYGG 465
IE D++ G Y F+DG+G +S E AR++ + G + P P A+Q+R+ G
Sbjct: 586 IERGEDLEDATG--NYCFTDGVGTISRELAREIWRSVRERGRRSRPDRTYPRAYQVRFQG 643
Query: 466 YKGVVAADPT-SSKKLSLRDSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGI 522
KG+++ D T S +K+ +R SM K+E+ + + ++V A+ + P FLNR LI LL LG+
Sbjct: 644 SKGMLSVDHTLSGRKIVIRPSMTKFEANQSSTIEVARAFDRPGPYFLNRPLIMLLEGLGV 703
Query: 523 WDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAEPF 579
E + Q AV +T ++ LE G + T+ + L G P +
Sbjct: 704 SYETLQALQDAAVYDAQQSVTSLERSARLLEAHGLGVSFRLTSAMLGLHKLGLDPLNDDV 763
Query: 580 LSMMLQTFRASKLL-ELRTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 636
F + +L EL+ RI +P + +++G D L G++F I
Sbjct: 764 FWRQAMDFAINHVLRELKHHARIPVPSLDSWTLVGVADVHGELQDGEIFACID------- 816
Query: 637 HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVV 690
S + SR ++ +G +++++P +HPGDV+V+ A+ P A + + VV
Sbjct: 817 -------SPTESRLIYL-EGPCLISRSPTIHPGDVQVVHAIGRPPAGSALAKESLRNAVV 868
Query: 691 FPQKGMR 697
F +G R
Sbjct: 869 FSIQGER 875
>gi|405952888|gb|EKC20645.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 1226
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 116/306 (37%), Positives = 175/306 (57%), Gaps = 25/306 (8%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V R+ +TP++ F E NR+LR + D F+R+ + DED +K+++ +
Sbjct: 930 VGRMILTPTKTVFLPKEPVFQNRILREYGPDF--FIRVVYRDEDFEKMNTV----QSCLL 983
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 379
D+ + + L++G I +R +EFL S+SQLRE S W F +T+ IR
Sbjct: 984 DDVLKI-----MKQFLKDGFRIRNRHYEFLGCSNSQLREHSFWFFHPHDDITSESIRNNS 1038
Query: 380 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 439
G F + R VA Y +R G FSS++ T+ V DE +I D ++ K +Y F+DGIG++S
Sbjct: 1039 GEFSKDRCVASYVSRFGLCFSSTRRTVDV--DESCLIYD--DDVKKDEYCFTDGIGRIST 1094
Query: 440 EFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADPT---SSKKLSLRDSMRKYESELTK 495
+ A+KVA++ L +P PSAFQIR+GG KGVVA DPT + L +R SM K+ES+
Sbjct: 1095 KLAKKVAAE--LHISPIPSAFQIRFGGCKGVVAQDPTLGDDADVLVIRKSMIKFESKSNN 1152
Query: 496 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL-DAILTDP---LKAQEA 551
L++L ++ LNRQ+I+LLS LGI DE+F Q + + + D +L D L E
Sbjct: 1153 LEILGETRPGRLHLNRQVITLLSGLGIPDEVFLGLQEKMLLDIADMLLYDKVALLALSEM 1212
Query: 552 LELMSP 557
+E + P
Sbjct: 1213 VEWLEP 1218
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 85/217 (39%), Positives = 121/217 (55%), Gaps = 18/217 (8%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V R+ +TP+R F E NR++R + D F+R+ F DED +KI + S A
Sbjct: 371 VARMVLTPTRSLFLPKEPMFQNRIVREYGEDF--FIRVVFRDEDFEKISTVQ-----SDA 423
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 379
+ I R+ + +G I R +EFL S+SQLRE S W F R +T+ IR
Sbjct: 424 VE----NILERMKTFFEDGFQIQTRDYEFLGCSNSQLREHSFWFFHPRDDITSENIRNSS 479
Query: 380 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 439
G R VA Y +R G FSS+K+T+ V ++ DV+ +Y F+DGIG++S
Sbjct: 480 GELSTERCVASYVSRFGLCFSSTKKTVDVDKGCVQYTDDVQ----NDEYCFTDGIGRIST 535
Query: 440 EFARKVASKCGLKDNP-PSAFQIRYGGYKGVVAADPT 475
+ A KV+++ + +P PSAFQIR+GG KGVVA DPT
Sbjct: 536 KLAEKVSNELNI--SPVPSAFQIRFGGCKGVVAQDPT 570
>gi|449547217|gb|EMD38185.1| hypothetical protein CERSUDRAFT_113336 [Ceriporiopsis subvermispora
B]
Length = 1207
Score = 169 bits (427), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 156/575 (27%), Positives = 268/575 (46%), Gaps = 75/575 (13%)
Query: 168 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEH---ALDKLYHLKEC 224
+L + + F+I ++++NG + N L+D + P++ ++ A D L H E
Sbjct: 319 SLDWPVAFQIEMMLRNGLI-------NTEELMDTLQKPINDLAKKYPATAGDILRHYTEQ 371
Query: 225 --CYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 282
+P + + + ++ IS G + V TP+++ GP + SNR
Sbjct: 372 LRVRDPKETPLQCFNRVVPTQYGLEPLQIS--GGNFTCYHVTFTPTKMVLEGPYVIQSNR 429
Query: 283 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIG 342
V+R + D F+R+ F DED L R + D + + ++ R+ LR G +
Sbjct: 430 VIRRYVGFQDRFIRVDFRDED-------RLQYRWAKEVDGS-SLLHDRVGGILRKGFDLA 481
Query: 343 DRKFEFLAFSSSQLRESSAWMFA----SRYGL-TAAEIREWMGNF---REIRNVAKYAAR 394
R+FEFLA+S+S LRE + W R GL TA IRE +G+F + I+ +KYAAR
Sbjct: 482 GRRFEFLAYSTSALREHAVWFMNPFEHPREGLVTAQGIRESLGDFSGSKVIKQPSKYAAR 541
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV------ASK 448
+ Q+F+++ ++S+ D+ E +PD +G+ Y+++DG+G +SAE + AS
Sbjct: 542 MAQAFTATDPSVSITRDQWETVPD----LGEDPYLYTDGVGTISAELGDMIWDALCAASP 597
Query: 449 CGLKDN-PPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY-----ESELTKLDVL-A 500
G + PSA+QIR+ G+KGVVA D K+ LR SM K+ E K+++ A
Sbjct: 598 DGKRRGVKPSAYQIRFLGFKGVVAVDERLQGIKMRLRPSMDKFKARADEEAEAKIEIARA 657
Query: 501 WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 560
+ C+LNR L+++L G+ F + Q ++ +A L+ S G
Sbjct: 658 FDYPGTCYLNRPLVTVLEDRGVDKSAFMRLQERIKAEIYTASDSLAQAISVLKANSIGNG 717
Query: 561 TN---ILKELLICG----YKPDAE----PFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
IL+ L G Y+ + + F+ +LQ + L ++ RI IP +
Sbjct: 718 YKLGFILQGLKNIGMGLPYEKNVQVLNDSFIDRLLQYAKNYVLRNIKHDARIPIPESYLL 777
Query: 610 MGCLDET---RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
+G DE V++ G Y + + ++G ++V ++P +
Sbjct: 778 VGIADEGPAYEAEGCENVYILPEGHIY-------ACVQHPDDPEPIYLEGNIMVTRSPTV 830
Query: 667 HPGDVRVLKAVNVPA------LHHMVDCVVFPQKG 695
HPGDV+ + A+ P ++ + VV P G
Sbjct: 831 HPGDVQQVTAIGKPPEGKICFFRNLKNVVVLPSTG 865
>gi|105990550|gb|ABF81697.1| truncated MOP1 [Zea mays]
Length = 310
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 161/292 (55%), Gaps = 9/292 (3%)
Query: 87 FNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLELPDFKENFAYYKESEDRFVLE 146
F+ KE WVR DFTP++ G+ + L ++L + E+ + E + +
Sbjct: 25 FHACKEDAKFAWVRALDFTPNSSFGECSTLVLKLSKGASVSYILESLPFSGELGE-LAIA 83
Query: 147 TGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPV 206
+ + S ++VP+V P+G ++PYE+LF++N LV G + ++++ +++++ +
Sbjct: 84 SMDVFGSSSNVVPLVDCPNGFSVPYEVLFRLNSLVHMGKLVARHVNADLFKVLED----L 139
Query: 207 SISCIEHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVT 266
SI + +K+ LK CYEP +++ + M R K S L+ +R+ +T
Sbjct: 140 SIDTLRRIFEKMSKLKSTCYEPLQFIRHEAHS-MNMRKKALSNKRE-SGKLMRCYRIHIT 197
Query: 267 PSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA--TDITR 324
PS++Y GPE VSN V+++ +F R++F+DED K+ LS R + +
Sbjct: 198 PSKIYCLGPEEEVSNYVVKYHSEYASDFARVTFVDEDWSKLSPNALSARTEQGFFSKPLK 257
Query: 325 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
T +Y RILS L+ G IG +K+EFLAFS+SQLR +S WMFAS LTA IR
Sbjct: 258 TGLYHRILSILKEGFCIGPKKYEFLAFSASQLRGNSVWMFASNSSLTAENIR 309
>gi|358384596|gb|EHK22193.1| hypothetical protein TRIVIDRAFT_149633 [Trichoderma virens Gv29-8]
Length = 1731
Score = 168 bits (425), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 124/379 (32%), Positives = 190/379 (50%), Gaps = 39/379 (10%)
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 394
LR GI I + F S+SQL+ + ++ A+ A ++ E +G+F +++ VAK A R
Sbjct: 124 LRAGITIQGVHYNFYGHSNSQLKSRTCYLCAASKEQIAQKV-EALGDFTKMKTVAKKAKR 182
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-- 452
+G FS ++ + V ++E IPD IE+G ++F+DG G ++ A +++ + +
Sbjct: 183 IGLLFSVARAAMQVDPKKVEDIPD--IEVGD--FIFTDGCGLIAPGLASQLSRRIKIAFR 238
Query: 453 --DNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESELTKLDVLAWSKYQPC 507
PS FQIRY GYKGVV DPT +K L +R SM+K+ D L++S Y
Sbjct: 239 NMRYTPSVFQIRYRGYKGVVTLDPTMAKGGPWLKMRKSMKKFSGG----DDLSFSPYVFG 294
Query: 508 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 567
LN ++I LL LGI + +KQ+E L DP A L ++ E + E
Sbjct: 295 NLNDEVIVLLDALGISRQTLLRKQQEHFDFLAKAYKDPRVAFRILCHLNMPE----VAER 350
Query: 568 LICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
+I P ++ ++ K+L R K RI IP R + G D L GQ
Sbjct: 351 VIIDSLDAVRPKINKLINA-EYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPGQCA 409
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHH 684
V+++ G Q + ++G+ V+V +NPCLHPGD++ L V P L H
Sbjct: 410 VKVTMDG---------------DGQPYALKGMKVLVTRNPCLHPGDLQKLDVVERPELAH 454
Query: 685 MVDCVVFPQKGMRYILTML 703
+VDC+VFP G R M+
Sbjct: 455 LVDCIVFPTTGRRPTADMM 473
>gi|769816|emb|CAA83245.1| unnamed protein product [Phanerochaete chrysosporium]
Length = 953
Score = 167 bits (424), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 137/441 (31%), Positives = 211/441 (47%), Gaps = 48/441 (10%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 322
V VTP+ GP SNRV+R + D F+RI+F+DE TDL R D
Sbjct: 434 VTVTPTTHRLDGPYPERSNRVMRMYPDYHDCFVRINFVDE-------TDLQFRFDREVD- 485
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAW-----MFASRYGLTAAEIRE 377
R I R+ L NGI I R FEFLA+S S L+E + W M + + A I
Sbjct: 486 GRAFIKRRVGEILTNGIDIAGRHFEFLAYSQSALKEHAVWFVKEFMLPNGTIVNARTIIA 545
Query: 378 WMGNFREIRNV----AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 433
+G+F + A+Y AR+ Q+F+++ ++ V DE+ I D++ G + F+ G
Sbjct: 546 GLGDFTRDHQLIYCPARYGARISQAFTATDSSVKVQPDEVFEIDDIEGPTG--TWCFTSG 603
Query: 434 IGKVSAEFARKVASKCGLKDNP------PSAFQIRYGGYKGVVAADPT-SSKKLSLRDSM 486
+G +S + AR + K + P A QIR+ G KG+++ D T + + LR SM
Sbjct: 604 VGTMSVQLARDIWKKLAARRGGSRWKTYPRALQIRFRGSKGMLSVDHTLQGRAICLRPSM 663
Query: 487 RKYES--ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 543
K+E+ LT +++ A+++ P +LNR LI ++ LG+ E+FE+ Q AV + +
Sbjct: 664 IKFEAPESLTDIEIARAFNRPGPFYLNRPLIMIMEHLGVPYEVFEELQDMAVEEAQESVE 723
Query: 544 DPLKAQEALELMSPGEN---TNILKELLICGYKP-DAEPFLSMMLQTFRASKLLELRTKT 599
KA LE G + T+I L G P + F M+ L EL+
Sbjct: 724 SLEKAARLLETFGLGASYRLTSIFLSLHKLGVGPLTGDEFWQKMMDFAINHVLRELKHHA 783
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
RI +PN +++G D L +VF G Y L G ++ + G +
Sbjct: 784 RIPVPNAWNLVGVADVHGYLEQDEVF----GCIY-PLDGTGPIY----------LDGPTL 828
Query: 660 VAKNPCLHPGDVRVLKAVNVP 680
V ++P +HPGDV+V + P
Sbjct: 829 VTRSPTIHPGDVQVAHGIGRP 849
>gi|403414238|emb|CCM00938.1| predicted protein [Fibroporia radiculosa]
Length = 1215
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 139/472 (29%), Positives = 231/472 (48%), Gaps = 56/472 (11%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 322
V VTP+ +Y GP SNR++R + + D+FLR+SF++E+ L R D
Sbjct: 420 VVVTPTTMYLEGPFPERSNRIMRMYMANQDSFLRVSFVEENR-------LMYRFDRELD- 471
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF-----ASRYGLTAAEIRE 377
R + R+ L NG+ I R F+FLA+S S L+E + W R + AA I
Sbjct: 472 ARDFVNRRVKHLLLNGLTIAGRHFDFLAYSQSALKEHAVWFVKPFNHTDRRQIDAATIIS 531
Query: 378 WMGNF-------REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
+G+F R I A+YAAR+ Q+F+++ ++SV +E+ IPD I Y F
Sbjct: 532 GLGSFHDLAFDERLIYCPARYAARISQAFTATDSSVSVEAEEVVPIPD--IWDATHTYSF 589
Query: 431 SDGIGKVSAEFARKVASKCGLKD------NPPSAFQIRYGGYKGVVAADPTSSKKL-SLR 483
+DG+G +S + A+ + + K P A+Q+R+ G KG+++ D +L LR
Sbjct: 590 TDGVGTISPDLAQAIWDELRAKQKRSRHRTKPRAYQVRFMGSKGMLSVDYRLENRLVCLR 649
Query: 484 DSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQL-DA 540
+SM K+++ + +A + +P +LNR LI LL LG+ F+ Q AV+ D+
Sbjct: 650 ESMIKFDAPNSLFIEIARAFDKPGRYYLNRPLIMLLEGLGVPYSTFQALQDAAVQNAQDS 709
Query: 541 I--LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLL-ELRT 597
+ L+ + EA L + T+ + L G P E + F + +L EL+
Sbjct: 710 VESLSSSARLLEAHGLGTSFRLTSTMLSLHRLGLGPLHEDIFWQQMMDFAVNHVLRELKH 769
Query: 598 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 657
RI +P+G +++G D LN G++F + H + S ++G
Sbjct: 770 HARIPVPDGWTLVGVADVHGFLNEGEIFACV--------HPQDSSVP-------IYLEGP 814
Query: 658 VVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRYILTML 703
+++++P +HPGDV+V+ A+ P + + VVF KG R + + L
Sbjct: 815 TLISRSPTIHPGDVQVVHAIGPPPPGSPFEKEPLPNTVVFSIKGGRPLPSYL 866
>gi|393904650|gb|EJD73758.1| RNA dependent RNA polymerase [Loa loa]
Length = 1022
Score = 167 bits (423), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 121/378 (32%), Positives = 193/378 (51%), Gaps = 45/378 (11%)
Query: 356 LRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE-TLSVHMDEIE 414
+R++ + + G A +IRE +G F N+ K +R+GQ F+ +K T+++ +
Sbjct: 1 MRDNGCYFYDDGKGGQAHKIREQLGKFDRC-NIPKMMSRMGQCFTQAKRCTVTLKRHKYN 59
Query: 415 IIPDV--KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA 472
DV + + Y+FSDG GKVS EFA K+A GL + PS +QIR+ G KGV++
Sbjct: 60 KTYDVIGGRDTNQAFYIFSDGAGKVSKEFAEKIALDIGLGTSVPSCYQIRHRGIKGVLSV 119
Query: 473 DPT--------SSKKLSLRDSMRKYESELTKL----------------DVLAWSKYQPCF 508
DP+ ++ + + M +++L L +++ +S
Sbjct: 120 DPSLDQRKHWAAANNVVDNNKMTNKQNDLAVLFRPSQDKFKAPRDEYIEIVKYSTPTSVC 179
Query: 509 LNRQLISLLSTL-GIWDEIFEKKQREAVRQLDAI----LTDPLKAQEAL--ELMSPGENT 561
LNR +IS+L + G+ ++ R+ + L I L D L ++E +L
Sbjct: 180 LNRPMISILDQVSGMQGFSVHERIRKRIHDLLDIQMTQLADMLMSEEKCREKLNELPWRV 239
Query: 562 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTL 619
N+ + L G+ EPF +L+ L +L K +I +P GRSM G +DET L
Sbjct: 240 NVSRLTLARGFALTQEPFFRSLLRANIKCTLKKLIAKVQIQVPPHFGRSMFGVMDETGQL 299
Query: 620 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 679
+GQVFVQ + + + L + S+S + I+ G V++ KNPC+ GDVRV +AV++
Sbjct: 300 QWGQVFVQCTRSIW--------LKTPSKSAAKIILVGKVMLTKNPCIVAGDVRVFEAVDI 351
Query: 680 PALHHMVDCVVFPQKGMR 697
P LHH+VD VVFPQ G R
Sbjct: 352 PELHHLVDVVVFPQHGPR 369
>gi|169623159|ref|XP_001804987.1| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
gi|160704927|gb|EAT77662.2| hypothetical protein SNOG_14810 [Phaeosphaeria nodorum SN15]
Length = 1674
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 126/387 (32%), Positives = 200/387 (51%), Gaps = 47/387 (12%)
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAK 390
I L +GI I + F S+SQL+ S +M+A+ A +I E MG+ ++R+VAK
Sbjct: 109 ITKMLVSGITINAISYHFFGHSNSQLKSRSCFMYAASKEEVARKI-EGMGDLSKLRSVAK 167
Query: 391 YAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCG 450
+ R+G FSS++ + + + + I DV Y+F+DG G +S +FA+ +A +
Sbjct: 168 KSKRIGLLFSSAEVSTMLPSERCQDIDDVT----SKDYIFTDGCGLMSPQFAKLLAQRRN 223
Query: 451 L----KDNPPSAFQIRYGGYKGVVAADPTSS--KKLSLRDSMRKY-ESELTKLDVLAWSK 503
+ K PS +QIRY GYKGV+ DPT S ++ R SMRK+ +S V+ +SK
Sbjct: 224 IVFRDKRYLPSVYQIRYRGYKGVLTLDPTLSGQTQVQFRASMRKFKDSPDYSFAVVDYSK 283
Query: 504 -YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT----DPLKAQEALELMSPG 558
Y LN +++ LL TLGI ++ KQ + LD I DP + A + +S
Sbjct: 284 PYAFGSLNDEIVVLLHTLGISEKTLLAKQ---TQHLDFIQNVQGGDP---RSAFQFLSYI 337
Query: 559 ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDET 616
T + ++LL+ G + LS++ Q + ++++ R + RI +P R + G D T
Sbjct: 338 NRTELAEKLLLEGPESVRPTLLSLVKQEY--ARMINKRDEQRCRILVPKSRLLFGVCDPT 395
Query: 617 RT------LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 670
L G+ FV+I+ G R + I+ V+V +NPCLHPGD
Sbjct: 396 AKDGCPGRLKEGECFVRITQDG--------------DGRAQTIINTEVLVTRNPCLHPGD 441
Query: 671 VRVLKAVNVPALHHMVDCVVFPQKGMR 697
++ K V++P H+VDC+VF +G R
Sbjct: 442 LQKFKVVDIPEFSHLVDCIVFTTQGKR 468
>gi|393244711|gb|EJD52223.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1372
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 140/487 (28%), Positives = 230/487 (47%), Gaps = 72/487 (14%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
LD + H V VTPS V GP +SNRVLR + D F+R+ F DE+ +
Sbjct: 567 LDRSVFLCHHVGVTPSGVRLEGPFPVLSNRVLRKYPDHQDCFIRVHFTDEEQYQF----- 621
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG 369
R D + R+ L+ G+ + R FEFLA+S L+E + W F + G
Sbjct: 622 --RWDREVDGV-AFVRGRVGGVLKQGLELAGRYFEFLAYSFGALKEHTVWFVTPFIDQAG 678
Query: 370 --LTAAEIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 426
+TA IR+ +G+F + I + + Y ARL Q+FS++ ++ V E+E IPD+ G+
Sbjct: 679 KSVTAESIRDSLGDFSKVIYHPSLYGARLSQAFSATYPSVRVEASEVEQIPDIYDPSGEN 738
Query: 427 KYVFSDGIGKVSAEFARKV-----ASKCGLKDNP-PSAFQIRYGGYKGVVAADPT-SSKK 479
V SDG S + A+ + K + NP P A+QIR GG KG++ DPT +K
Sbjct: 739 --VMSDGCAPCSTQLAKDIDDVLMEGKSRYEYNPVPKAYQIRIGGSKGMIYVDPTLPGRK 796
Query: 480 LSLRDSMRKYES-ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 538
L LR SM K+++ + ++V + +LNR L+ LL LG+ F++ Q
Sbjct: 797 LLLRPSMNKFDAPDSLDIEVSNIPRASHMYLNRPLVMLLEDLGVRLSTFKQLQE------ 850
Query: 539 DAILTDPLKAQEALELMSPGEN----------TNILKEL--LICGYKPDAEPFLSMMLQT 586
D + D L A + G N + +L EL + G + D + +L
Sbjct: 851 DTMAAD-LDAARHIGRFIIGMNQIGLGKRFYLSYVLGELADMEFGLRDDCQGDFGSLLDD 909
Query: 587 FRASKLL---------ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 637
+ ++ +++ + RI +P+ +++G LDE + L GQ+ + Y
Sbjct: 910 YWYHGIVKSTLWDQFRKIKYQARIRVPDSWTLVGVLDEHQILQTGQIMAYVQNEDY---- 965
Query: 638 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP-----ALHHMVDCVVFP 692
+ ++G V++ ++P +HPGDV++++AV P + + +CV+F
Sbjct: 966 -----------PNGYFLKGPVLICRSPVVHPGDVQMVEAVVPPDGSILDVERLPNCVIFS 1014
Query: 693 QKGMRYI 699
G R I
Sbjct: 1015 ALGARSI 1021
>gi|241244478|ref|XP_002402311.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
gi|215496312|gb|EEC05952.1| RNA-directed RNA polymerase, putative [Ixodes scapularis]
Length = 519
Score = 167 bits (422), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 120/333 (36%), Positives = 169/333 (50%), Gaps = 27/333 (8%)
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK---IEIGKTKYVFS 431
IR+WMG F I NVAK AR+GQ FSS+++ + V E+ ++PD++ + + YVFS
Sbjct: 1 IRDWMGRFDGIPNVAKRMARMGQCFSSTEQAVLVRKHEVRMVPDMEGGAHPVSRKPYVFS 60
Query: 432 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT--SSKKLSLRDSMRKY 489
DG+G +S A++V LK+ PSA QIRY G KG++ +P + K L LR SM+K+
Sbjct: 61 DGVGMMSVPLAQEVYKVMKLKER-PSAIQIRYAGAKGMLCINPELPNQKLLYLRPSMQKF 119
Query: 490 ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 549
T D L K R+L + L + D Q L+ + +K
Sbjct: 120 PC--TSSDYLEVVKVS---APRKLHTPLGRVHYLDSDRTIHQVSGEYHLEELGLGCIKDD 174
Query: 550 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE---LRTKTRIFIP-- 604
+ M + K I + +S F +L LR KTRI +P
Sbjct: 175 AIMSRMVSTAMAVLTKPRYIIS---SCDIMVSCSCTMFNLVVVLHAAGLRYKTRIALPVD 231
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 664
R+M+G +D T L YGQVFVQ S G R +S + R ++ G V+V K P
Sbjct: 232 RARNMLGVVDTTGVLRYGQVFVQCSEMGAR-----ASQQGPPKCR---VITGQVLVTKCP 283
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
CLHPGDVR A++ P LHH+VDC+VFP +G R
Sbjct: 284 CLHPGDVRKFTAIDEPRLHHVVDCIVFPGQGHR 316
>gi|302682736|ref|XP_003031049.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
gi|300104741|gb|EFI96146.1| hypothetical protein SCHCODRAFT_57049 [Schizophyllum commune H4-8]
Length = 739
Score = 167 bits (422), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 143/471 (30%), Positives = 231/471 (49%), Gaps = 62/471 (13%)
Query: 265 VTPSRVYFCGPEINVSNRVLRHFR-RDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDIT 323
+TP+R+ GP SNRV+R F + D+FLR+SF +E T L R D T
Sbjct: 298 ITPTRIILQGPYPERSNRVIRMFDVQHHDSFLRVSFTEE-------TKLQYRFDREVD-T 349
Query: 324 RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-RYGLT---AAEIREWM 379
+ + +R+ S L+NG++I R+FEFLA+S S L+E + + R G T AA + +
Sbjct: 350 ASFVRSRVGSILKNGLVIAGREFEFLAYSQSALKEHTVYFVKPFRVGDTEVNAASVIASI 409
Query: 380 GNFREIRN---VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
GNF + + A+YAARL Q+F+++ ++ V+ E II D+ G Y F+DG+G
Sbjct: 410 GNFEKSSDRLCPARYAARLSQAFTATDASIVVNPAETHIISDISTPDG--MYHFTDGVGT 467
Query: 437 VSAEFA-----------RKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRD 484
+S E A ++ + G+ P+AFQIR+ G KG+++ D T + + LRD
Sbjct: 468 MSREMAVDAYTEVNRYRKRAMNGRGI----PAAFQIRFMGSKGMLSVDHTLQGRVVCLRD 523
Query: 485 SMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 542
SM K++ + +A +P +LNR LI LL LG+ E F + Q AV+ +
Sbjct: 524 SMIKFDCPNNRNLEIARVFDRPAKYYLNRPLIMLLEGLGVPYETFLQHQDAAVQDAYSST 583
Query: 543 TDPLKAQEALELMSPGENTNILKELL----ICGYKPDAE-PFLSMMLQTFRASKLLELRT 597
KA LE + G + + LL +C + + F S ML+ L EL+
Sbjct: 584 ESLTKAARMLEALGLGTSFRLPSLLLNLVKLCNIENLGDNKFYSRMLEFAIHHVLRELKN 643
Query: 598 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL 657
RI IP +++G D L ++F I + S + ++G
Sbjct: 644 HARIPIPGAYTLVGVADVHGYLKEWEIFACI---------------KAHDSDEVIYLEGD 688
Query: 658 VVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRYILTM 702
+++ ++P +HPGDV++ +A+ P A + + VVF +G L +
Sbjct: 689 ILIPRSPSIHPGDVQIARAIGRPRPGSPFAKEPLANTVVFSVRGTHISLPL 739
>gi|225680005|gb|EEH18289.1| RNA-directed RNA polymerase Rdp1 [Paracoccidioides brasiliensis
Pb03]
Length = 1258
Score = 166 bits (421), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/221 (42%), Positives = 131/221 (59%), Gaps = 15/221 (6%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATD 321
+VTPS +Y+ P I+ NRV R +R D FLR+ F DE ++ KI S+A
Sbjct: 386 AEVTPSTIYYKPPSIDTGNRVFRRYREYADRFLRVRFTDEKNMGKIFPY------SNANI 439
Query: 322 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGN 381
+ +YTR+ T++NGI IGDR +EFLAFS++QLRE +A+ FAS LTAA IR +G
Sbjct: 440 VCMNEVYTRVTLTMKNGITIGDRCYEFLAFSNAQLREHAAYFFASLPHLTAANIRAQLGK 499
Query: 382 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF 441
F IRNVAK+AAR+GQ FSS++ + +EI +I + Y FSDG+G +S
Sbjct: 500 FNPIRNVAKHAARVGQCFSSTRALTGCPVQIVEI-----DDIERNGYTFSDGVGLISKFL 554
Query: 442 ARKVASKCG---LKDNPPSAFQIRYGGYKGVVAADPTSSKK 479
A+ + S+ L PPS FQ R GG KG++ + ++
Sbjct: 555 AQMIQSEFAIETLSGEPPSVFQFRLGGCKGILTVSSKAHRR 595
Score = 94.0 bits (232), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 5/131 (3%)
Query: 577 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYGQVFVQISGAGYRQ 635
+PF++ +L+ +R ++ L+ K +I I G ++GCLDET +L Y + GA Y Q
Sbjct: 597 DPFVTSLLELWRVWQIKYLKEKAKIAIDKGAFLLGCLDETGSLKGYFRSKRLGGGATYEQ 656
Query: 636 -LHGESSLFSS--SRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 691
L +F S + +++GL ++A+NP LHPGD+RV+KAV++P LHH+ D VV
Sbjct: 657 KLDCLPEIFVQILRHSEGTYEVIEGLCILARNPSLHPGDIRVVKAVDIPGLHHLKDVVVL 716
Query: 692 PQKGMRYILTM 702
PQ G R I +M
Sbjct: 717 PQTGDRDIASM 727
>gi|170094614|ref|XP_001878528.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164646982|gb|EDR11227.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1051
Score = 166 bits (421), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 138/511 (27%), Positives = 232/511 (45%), Gaps = 74/511 (14%)
Query: 250 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 309
A + L+ V +TP+R+ GP SN +R ++ DNF+R+ F DED
Sbjct: 204 ARGFNASLISAAHVTITPTRMLLEGPLPTQSNNAIRKYKGCDDNFIRVDFRDEDRSSYK- 262
Query: 310 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 369
R D++ R R+ L+ GI+I R F+FLA+S+S LRE + W +S
Sbjct: 263 -----RNQDVDDMSVLR--ERVGDVLKQGIMIAGRHFQFLAYSTSSLREHAVWFMSSFES 315
Query: 370 ----LTAAEIREWMGNFREI-RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK---- 420
+T ++ +G+F + + +KYAAR+ Q FS++ ++ +H E E + D++
Sbjct: 316 GGEMITPQKVVRDLGDFSALAQQPSKYAARIAQKFSATDPSVHIHGHEWERVDDIEYIEE 375
Query: 421 ---------IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP---------PSAFQIR 462
IE KT + F+DG+G +S +++ L++N PSA+QIR
Sbjct: 376 RTIRNDDGDIETRKTVHCFTDGVGTISESLGQEIFET--LRNNEGRLEEKAPLPSAYQIR 433
Query: 463 YGGYKGVVAADP-----TSSKKLSLRDSMRKYES--ELTKLDVLAWSKY-QPCFLNRQLI 514
+ G KGVV D +S ++ LR SM K+ S + L++ +Y + C+LNR L+
Sbjct: 434 FMGSKGVVVVDKQLDKNSSGIRMRLRPSMIKFPSLAQSEPLEISEAFRYPKLCYLNRPLV 493
Query: 515 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPG-----ENTNILKELLI 569
L LG+ + F Q A+ + I + + +E G + +ILK
Sbjct: 494 MFLEDLGVRLQTFLDLQNAAIAEAQTIDDSLEQFRSIMETHRGGLGKSFDFPDILKHFED 553
Query: 570 CGY---KPDAEP-----FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET---RT 618
G+ D P F+ + R L E++ RI IP+ ++G DE R
Sbjct: 554 DGFDLHSQDGRPGIDNQFIKQLRNVARIEVLREIKHSARIKIPDSYLLVGVADEGPAYRK 613
Query: 619 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
Y V+ G Y + + ++ + G ++++P HPGDV+ ++ +
Sbjct: 614 DGYQNVYELPEGHIY-------ACVQKAGDKEPTWLSGSCSISRSPVAHPGDVQRVRCIG 666
Query: 679 VPA------LHHMVDCVVFPQKGMRYILTML 703
P H+V+ VV P G R + + L
Sbjct: 667 KPPEDKLCLFSHLVNVVVLPSVGKRSLASCL 697
>gi|281207108|gb|EFA81291.1| RNA-directed RNA polymerase [Polysphondylium pallidum PN500]
Length = 2852
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 144/450 (32%), Positives = 215/450 (47%), Gaps = 53/450 (11%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD-KIHSTD-LSPRGS 317
V +TP+RV P I + NR +R F + F+ + F +EDL +I D L P
Sbjct: 1320 VKSAYITPTRVILNLPRIQLGNRCIRQFPSE--RFMSVQFTEEDLQIRIEYQDFLLP--- 1374
Query: 318 SATDITRTRIYTRILSTLRNGILIGDR-KFEFLAFSSSQLRESSAWMFASRYGLTA---- 372
Y+ IL NGI + + F FL SSSQ+R +W + G+
Sbjct: 1375 ---------FYSHIL---LNGINVPEMGTFYFLGSSSSQVRNYQSWFYCVEEGVNKESRL 1422
Query: 373 AEIREWMGNFREIRNVAKYAAR-LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 431
EIRE M + A+ A R + F S+ T+ + E D +I + + F+
Sbjct: 1423 KEIREAMIGKTDSSWSARKALRAMSLVFPSTIPTIRIPPHEYHEGLD---DIVRNDHNFT 1479
Query: 432 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYES 491
+G G V E AR++A + SA+QIR GG KGVV+ + + + LR SMRK+ +
Sbjct: 1480 EGCGYVGIETAREIAIAGNFPQDT-SAYQIRIGGNKGVVSVHHSIRRGIYLRKSMRKFNT 1538
Query: 492 ELTK-----LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
L+V++ S + C LNRQ+I+LL LG+ D F Q+ A+ +L I D
Sbjct: 1539 TDEHAYNRTLEVISVSSKKACNLNRQIINLLVGLGVLDGFFLSLQQAALDKLAHIFNDES 1598
Query: 547 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 606
+ + +S + EL + +P + LQ KL +++ K I I +
Sbjct: 1599 VRRHIMHELSSIDEA--FDELDLAA----NDPLICSSLQLCYLKKLDQIKDKCMIEIDSA 1652
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
R+++G DE+ L +VF+QIS + E S R ++ G V V KNPCL
Sbjct: 1653 RTVLGVSDESGILGPDEVFLQIS------IDEEDGHIS------RKVITGQVFVCKNPCL 1700
Query: 667 HPGDVRVLKAVNVPALHHM-VDCVVFPQKG 695
HPGD+RVL AV+VP L + VD + F Q G
Sbjct: 1701 HPGDIRVLTAVDVPELRNCYVDVIAFSQNG 1730
>gi|390594179|gb|EIN03593.1| RdRP-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 973
Score = 166 bits (420), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 153/513 (29%), Positives = 236/513 (46%), Gaps = 82/513 (15%)
Query: 222 KECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 281
KE Y + WLTD DGL V VTPS + + SN
Sbjct: 412 KEFKYNNATWLTDTA------------------DGLFDCLHVIVTPSSIVPQEQYPDRSN 453
Query: 282 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILI 341
RV+R F +F+R+ F +ED ++ D G + TRI LRNG +
Sbjct: 454 RVIRSFPDHQQHFVRVQFTEEDYHQLR-FDRDVDGEHF-------VKTRIGGVLRNGFQV 505
Query: 342 GDRKFEFLAFSSSQLRESSAWMFASRYGL-----TAAEIREWMGNF-REIRNVAKYAARL 395
G R FEFLA+S S L++ + W F R+ + T IRE +G+F + I + Y AR+
Sbjct: 506 GGRTFEFLAYSQSALKDHAVW-FVRRFKIDNQWITGNTIRESLGSFDKVIYCPSLYGARM 564
Query: 396 GQSFSSSKETLSVHMDEIEIIPDV--KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKD 453
Q+F+++ ++++ +EI IPD+ + G+T + F+DG+G +S E A+++ + +
Sbjct: 565 SQAFTATDPSVTITAEEIVRIPDIERRDSTGRT-WQFTDGVGTISPELAQEITTALVARS 623
Query: 454 NP-------PSAFQIRYGGYKGVVAAD-PTSSKKLSLRDSMRKYESELTKLDV---LAWS 502
P AFQIR G KG+V+ + + L LR SM K+ES LD+ +
Sbjct: 624 RRKKGRYFRPRAFQIRIAGSKGMVSVNHKLHGRVLCLRPSMIKFESP-NSLDIEIAKTFD 682
Query: 503 KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN-- 560
K LNR L+ LL LG+ + F K Q AV A KA + LE G
Sbjct: 683 KPGKFLLNRPLVMLLEGLGVPADEFMKLQNAAVEDTKAASRSLTKAAQILETHGLGTAFR 742
Query: 561 -TNILKELLICG---------YKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
T++ L G ++ + E F+ + L EL+ RI +P+ +++
Sbjct: 743 LTSVFLGLERLGVDLTRRGNRFRLEDE-FIHRAIAYAINHVLRELKHHARIPVPSSWTLV 801
Query: 611 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 670
G D L G+VF I + HG ++ +QG V++ ++P +HPGD
Sbjct: 802 GIADIHGVLKEGEVFACIQPS-----HGGEKIY----------LQGPVMITRSPVIHPGD 846
Query: 671 VRVLKAVNVPALHHMVD------CVVFPQKGMR 697
V++L+AV P + D V+F KG R
Sbjct: 847 VQMLRAVGRPPAGSIYDLEPIPNTVIFSIKGSR 879
>gi|403164222|ref|XP_003324286.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164936|gb|EFP79867.2| hypothetical protein PGTG_05092 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 1282
Score = 166 bits (420), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 135/472 (28%), Positives = 231/472 (48%), Gaps = 56/472 (11%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
D + V +TP+ + GP SN +LR + + F+R++ DED H D
Sbjct: 469 DNVFKCRSVTITPTTLILEGPLPEESNSILRLYDYN-SAFIRVAIRDEDGSNYHH-DREV 526
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGLT 371
G RT + R L +G+ + R+F FL +SSS L+ AW F + +
Sbjct: 527 DG-------RTFLKQRYRPFLVDGLYVAGRRFMFLGYSSSALKCHQAWFVCPFVHKGAVM 579
Query: 372 AAE-IREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 429
+AE IR MG F + + A+Y AR+ Q+F+++++ +++ ++ IPDV+ + V
Sbjct: 580 SAEKIRSRMGTFSLVNRIPARYMARIAQAFTTTQKAVTLAPSQLRKIPDVQ----RNGSV 635
Query: 430 FSDGIGKVSAEFARKV-----ASKCGLKDNPP---SAFQIRYGGYKGVVAADPT-SSKKL 480
F+DG+G +S AR+V + LK S +QIR GGYKG+++ DPT + + +
Sbjct: 636 FTDGVGTISPSLARQVEQALLGTMMVLKRRNAINSSCYQIRLGGYKGMLSIDPTLAGEIV 695
Query: 481 SLRDSMRKYESELTKLDVLA-WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
LR SM K++++ LD+ + + + P FLNR LI +L L I +F Q++ VR ++
Sbjct: 696 GLRPSMSKFDADSYTLDIASSFRRPLPSFLNRPLIKILEDLKIPSHVFMTAQQKTVRSIE 755
Query: 540 AILTDPLKAQEALELMSPGENTN---ILKEL--LICGYKPDA--EPFLSMMLQTFRASKL 592
++ + +E G +++ ILK L+ PD F+ L L
Sbjct: 756 RSRESFRQSAKLMEKAGLGFSSSFPKILKRFSSLMRTDNPDEVRSTFIDDCLDLAVIECL 815
Query: 593 LELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF 652
+L+ + RI + +++G DE L GQ++ + G + R
Sbjct: 816 RDLKYRARIPLEGSYTLVGVADEEFCLQEGQIYACVQEKG----------------KPRK 859
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVP-----ALHHMVDCVVFPQKGMRYI 699
+ G + ++++P +HPGDV+V+ A+ P L +V+CVVF G R +
Sbjct: 860 YLSGKIAISRSPSIHPGDVQVVHAIGRPPPGSEKLGALVNCVVFSVIGKRSL 911
>gi|116200327|ref|XP_001225975.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
gi|88179598|gb|EAQ87066.1| hypothetical protein CHGG_08319 [Chaetomium globosum CBS 148.51]
Length = 1176
Score = 166 bits (419), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 125/378 (33%), Positives = 188/378 (49%), Gaps = 25/378 (6%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
+ R VTPSR+ GPE NRVLR + D F+R F DE+ DL +
Sbjct: 426 IFRAVVTPSRITLHGPEPEPMNRVLRKYP-DHSYFIRTQFCDEN-----GQDLFFNARVS 479
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW- 378
D IY R S L NGI + R ++ L FS S LR SAW+ A + +I
Sbjct: 480 LD----SIYDRFKSVLSNGIQVAGRVYKLLGFSHSSLRAHSAWLSAPFFHQGQVQIPTLI 535
Query: 379 ---MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDVKIEIGKTKYVFSDG 433
+GNF +I++ A+ AAR+GQ+FS + + + +E+ I D I + + VFSDG
Sbjct: 536 VTGLGNFDKIKSPARRAARIGQAFSETPWAIDLVAHSVEVWEIDD----IVRNEEVFSDG 591
Query: 434 IGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE 492
+GK+S + AR V P+ FQIR G KG++A DP K + +R SM K++S
Sbjct: 592 VGKLSQDVARLVYDVIPRSKGFPTCFQIRQAGAKGMLAIDPGLGGKVICIRPSMSKFDST 651
Query: 493 LTKLDVLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEA 551
+L++ S P LNRQLI +L +G ++ F Q +++L I +
Sbjct: 652 DKQLEICDMASNPMPMVLNRQLIKILEDMGAPNQWFLNLQSRELQRLRTISSTVYNTASF 711
Query: 552 LELMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 608
L GE+ + L+++ G + FL ++ S+L L+ K RI + NG +
Sbjct: 712 LRAQRIGESIRLHKFLRQIETMGLDYRRDDFLRGAVEAVLLSELRLLKHKARIPVRNGMT 771
Query: 609 MMGCLDETRTLNYGQVFV 626
+ G +DET L G+V+V
Sbjct: 772 LFGIMDETGFLKEGEVYV 789
>gi|407926953|gb|EKG19860.1| PhoH-like protein [Macrophomina phaseolina MS6]
Length = 1608
Score = 165 bits (418), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 118/372 (31%), Positives = 182/372 (48%), Gaps = 31/372 (8%)
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 394
L++GI + F S+SQL+ S +FA +I E +G+F ++ V K A R
Sbjct: 17 LKSGIRFNGVHYNFYGHSNSQLKTRSCVLFADTRAAIHRKI-ESLGDFSKMTTVGKKAKR 75
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-- 452
+G FSS++ + + + IPDV+ Y+F+DG G +S AR + +
Sbjct: 76 IGLLFSSAEMGVELAPERCADIPDVE----ANDYIFTDGCGLISPHLARSLVQSVHIAFR 131
Query: 453 --DNPPSAFQIRYGGYKGVVAADPTSSKKL--SLRDSMRKYES--ELTKLDVLAWSK-YQ 505
PS FQIRY GYKGV++ DP+ + R SM+K+ +LT L V+ +SK Y
Sbjct: 132 NVKYIPSVFQIRYRGYKGVLSLDPSMGSQCLAKFRSSMKKFRGGDDLT-LSVVDYSKPYT 190
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 565
+LN +++ LL L + DE+F +KQ E + L+++ L + +S ++ +
Sbjct: 191 FGYLNDEVVLLLHALRVPDEVFLRKQAEHLHFLESVTR--LDVRMCFRFLSYCNRLDLAE 248
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
LLI G + M+ Q + + RI IP R + G D L G+
Sbjct: 249 RLLISGVEAVERDVRKMVGQEYERMLTKRNEQRCRILIPQSRLLFGVCDTKGLLKEGECV 308
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
V+++ G Q + IV V+V +NPCLHPGD++ +AV P L H+
Sbjct: 309 VRVTMDGDGQ--------------AQTIVGTQVLVTRNPCLHPGDLQKFRAVFHPELSHL 354
Query: 686 VDCVVFPQKGMR 697
VDCVVFP G R
Sbjct: 355 VDCVVFPTAGKR 366
>gi|210148496|gb|ACJ09171.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 220/458 (48%), Gaps = 47/458 (10%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
S I R+ L+ G++IG F +A S+SQ +E + W F + + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 437 VSAEFARKVA----SKCGLKDNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYE 490
E + A K G+ P SA Q R GG KGV++ + S ++ LR SM K+
Sbjct: 537 AGREVLNQAALALNEKVGINAQP-SAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFR 595
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPL 546
S+L L+V+ +KYQ FLNRQ I+++ G+ E IFE + D + + +
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 547 KA--QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
Q+ + L N L +L+ G+ + P L + L +L+ + R+ +
Sbjct: 656 TENDQQLIALC----NDFPLAQLIRSGF--NENPLLLDVAAIIECRALQDLKWRARVKLS 709
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 664
+G ++G DET TL G+VF Q F + +V V+V + P
Sbjct: 710 DGVYLIGIADETGTLKEGEVFCQ---------------FQENDDSPPKVVVNEVLVCRAP 754
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
DVR AV+ P L H+ + +VF +GMR + +M
Sbjct: 755 AC---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSM 789
>gi|209978362|gb|ACJ04634.1| RNA-dependent RNA polymerase [Cryptococcus neoformans var. grubii]
Length = 1120
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 220/458 (48%), Gaps = 47/458 (10%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
S I R+ L+ G++IG F +A S+SQ +E + W F + + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 437 VSAEFARKVA----SKCGLKDNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYE 490
E + A K G+ P SA Q R GG KGV++ + S ++ LR SM K+
Sbjct: 537 AGREVLNQAALALNEKVGINAQP-SAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFR 595
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPL 546
S+L L+V+ +KYQ FLNRQ I+++ G+ E IFE + D + + +
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 547 KA--QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
Q+ + L N L +L+ G+ + P L + L +L+ + R+ +
Sbjct: 656 TENDQQLIALC----NDFPLAQLIRSGF--NENPLLLDVAAIIECRALQDLKWRARVKLS 709
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 664
+G ++G DET TL G+VF Q F + +V V+V + P
Sbjct: 710 DGVYLIGIADETGTLKEGEVFCQ---------------FQENDDSPPKVVVNEVLVCRAP 754
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
DVR AV+ P L H+ + +VF +GMR + +M
Sbjct: 755 AC---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSM 789
>gi|405121923|gb|AFR96691.1| hypothetical protein CNAG_03466 [Cryptococcus neoformans var.
grubii H99]
Length = 1120
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 137/458 (29%), Positives = 220/458 (48%), Gaps = 47/458 (10%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
S I R+ L+ G++IG F +A S+SQ +E + W F + + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLVIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 437 VSAEFARKVA----SKCGLKDNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYE 490
E + A K G+ P SA Q R GG KGV++ + S ++ LR SM K+
Sbjct: 537 AGREVLNQAALALNEKVGINAQP-SAIQFRLGGAKGVLSDWSQLVSEYEIRLRPSMIKFR 595
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPL 546
S+L L+V+ +KYQ FLNRQ I+++ G+ E IFE + D + + +
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 547 KA--QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
Q+ + L N L +L+ G+ + P L + L +L+ + R+ +
Sbjct: 656 TENDQQLIALC----NDFPLAQLIRSGF--NENPLLLDVAAIIECRALQDLKWRARVKLS 709
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 664
+G ++G DET TL G+VF Q F + +V V+V + P
Sbjct: 710 DGVYLIGIADETGTLKEGEVFCQ---------------FQENDDSPPKVVVNEVLVCRAP 754
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
DVR AV+ P L H+ + +VF +GMR + +M
Sbjct: 755 AC---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSM 789
>gi|58269288|ref|XP_571800.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|58269290|ref|XP_571801.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|58269292|ref|XP_571802.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57228036|gb|AAW44493.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228037|gb|AAW44494.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228038|gb|AAW44495.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 1120
Score = 165 bits (418), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 135/458 (29%), Positives = 223/458 (48%), Gaps = 47/458 (10%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADNMKLI 425
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
S I R+ L+ G++IG F +A S+SQ +E + W F + + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMW-FINNKVIDGLELR 482
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 437 VSAEFARKVA----SKCGLKDNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYE 490
E + A K G+ ++ PSA Q R GG KGV++ + + ++ LR SM K++
Sbjct: 537 AGREVLNQAALALNEKVGI-NSQPSAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFK 595
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPL 546
S+L L+V+ +KYQ FLNRQ I+++ G+ E IFE + D + + +
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFKDRVWNNAV 655
Query: 547 KA--QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
Q+ + L N L +L+ G+ + P L + L +L+ + R+ +
Sbjct: 656 TENDQQLIALC----NDFPLAQLIKSGF--NENPLLLDVAAIIECRALQDLKWRARVKLL 709
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNP 664
+G ++G DET TL G+VF Q + S + +V ++V
Sbjct: 710 DGVYLIGIADETGTLKEGEVFCQFQ--------------ENDESPPKIVVNEVLVCRAPA 755
Query: 665 CLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
C DVR AV+ P L H+ + +VF +GMR + +M
Sbjct: 756 C----DVRRAWAVDNPELRHLKNVIVFSTQGMRDMPSM 789
>gi|241083173|ref|XP_002409051.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492624|gb|EEC02265.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 597
Score = 165 bits (417), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 125/364 (34%), Positives = 192/364 (52%), Gaps = 48/364 (13%)
Query: 232 LTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI 291
L Q+RK +S P+ G + R+ VTPSRV+F P + NRVLR F +
Sbjct: 261 LFHQFRKVHSSDIVPA--------GSYLIRRLFVTPSRVFFLPPLLFRENRVLRRF--NP 310
Query: 292 DNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILST-LRNGILIGDRKFEFLA 350
+ +R++F D++L ++ + + R R + I+ LR G+ +G+R+F+FLA
Sbjct: 311 EYAMRVTFRDDNLQQLSRSLMFHR-------RRDEMVDAIVGKFLREGVAVGNRRFKFLA 363
Query: 351 FSSSQLRESSAWMFA-SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH 409
S SQLR+ AW++A G T IR WMG+F I N+AK AR+GQ FSS+ ETL V
Sbjct: 364 TSCSQLRDHGAWLYAEDSLGNTVDLIRTWMGDFSGIPNIAKKMARMGQCFSSTMETLKVP 423
Query: 410 M--DEIEIIPDV---KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYG 464
+ D +++ PD+ + + ++ FSDGIG +SA K IRY
Sbjct: 424 LKGDIVQMTPDIVGGRHPVSAKEFSFSDGIGMISASLMEK----------------IRYA 467
Query: 465 GYKGVVAADPT-SSKKLSLRDSMRKYE-SELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 522
GYKG++ +P KL LR SMRK++ S L+++ S + LNR LI++L LG+
Sbjct: 468 GYKGMLCLNPCLQGDKLVLRPSMRKFDCSSSDNLELVKVSAPRLVCLNRPLITILEQLGV 527
Query: 523 WDEIFEKKQREAVRQLDAILTDPLKAQ-EALELMSPGENTNI-LKELLICGYKPDAEPFL 580
+F Q+ V Q TD L + AL+++S T++ EL+ G+ +PF+
Sbjct: 528 PSRVFLCLQQSTVLQ----CTDALVCETTALQVLSGFGGTSLPFAELVRGGFCLTRDPFV 583
Query: 581 SMML 584
+L
Sbjct: 584 RSLL 587
>gi|389746475|gb|EIM87655.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1279
Score = 165 bits (417), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 147/482 (30%), Positives = 232/482 (48%), Gaps = 54/482 (11%)
Query: 250 AISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHS 309
AIS D + + + +TP GP ++ SN VLR F D FLR+SF DE+ +
Sbjct: 469 AISPSDAIFDSYTLVLTPLSRILEGPLLDQSNSVLRRFGHH-DCFLRLSFQDENHTPLRR 527
Query: 310 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 369
S G+S ++ RTR S + +GI I R F+FL +S S L++ S +S +
Sbjct: 528 DPTS--GTSIAELLRTRFR----SVMVDGIRIAGRYFQFLGYSMSGLKDHSIMFMSSFHD 581
Query: 370 -----LTAAEIREWMGNFREIRN-VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI 423
+TA IR +G+F I N A AAR Q+FS+S ++++ +EI I D +
Sbjct: 582 ERGELMTAEGIRRTLGSFNHISNKPALLAARWSQAFSASDPSVTLDPNEIRRIDDRRSPS 641
Query: 424 GKTKYVFSDGIGKVSAEFARKV-------ASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 476
G +F+DG G +S AR V + + PS FQIR GG KGV+ DPT
Sbjct: 642 GS---LFTDGCGTISPLLARDVWKFLQHRRRRAAKMRSVPSCFQIRIGGAKGVLFQDPTL 698
Query: 477 S---KKLSLRDSMRKYES-ELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKK 530
+ + + LR S K+E+ E LD+ A + +P FLNR LI LL LG+ D++F
Sbjct: 699 AGLGRVVCLRPSQTKFENPEALTLDI-ASTSARPIRMFLNRPLILLLEFLGVQDDVFLSL 757
Query: 531 QREAVRQLDAILTDPLKAQEALELMSPGENTNI--LKELLICGYKPDAEPFLSMMLQ--- 585
Q++A ++ A + G + + L LI K D + Q
Sbjct: 758 QKDATAAVERARDSFTDAAKLFSHHGFGSSFRLASLFNNLISELKLDDSDLQELGCQLIT 817
Query: 586 ---TFRASKLL-ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS 641
+ A+ +L E++ + RI + +++G DE L G+++ +
Sbjct: 818 RTVEYAATHVLREIKFRARIPVHGSWTLLGVSDEWSCLREGEIYATVR------------ 865
Query: 642 LFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILT 701
R+ ++G V++ ++P +HPGDV+ + AV P L H+ + VVF +G R + +
Sbjct: 866 ---DERTGTYVPIEGRVLITRSPQIHPGDVQFVNAVRHPKLEHLNNVVVFSCEGDRSLPS 922
Query: 702 ML 703
ML
Sbjct: 923 ML 924
>gi|358369173|dbj|GAA85788.1| RNA-directed RNA polymerase (Sad-1) [Aspergillus kawachii IFO 4308]
Length = 745
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/260 (35%), Positives = 150/260 (57%), Gaps = 13/260 (5%)
Query: 455 PPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQL 513
PPSAFQ R GG KG++A + +++ +R+S K+ + L+++ WS+Y LNRQL
Sbjct: 13 PPSAFQFRLGGCKGMLAVSSDAQPQEIHIRESQNKFPTVHNGLEIIRWSQYSMATLNRQL 72
Query: 514 ISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMSPGENTNILKELLICGY 572
I ++STLGI DE+F K + +R LD + +A E L+ + P + T + +++ G+
Sbjct: 73 ILVMSTLGIPDEVFHAKLKSMLRALDEAMESDSRAIEVLKKYVDPNQTTLTVSQMVSDGF 132
Query: 573 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI---S 629
+ EPF + +L +R + L+ K +I I NG +++G +DET L G + +I
Sbjct: 133 RRSKEPFFTSILALWRTWHIKYLKEKAKIVIDNGTNLLGVMDETGILK-GYFYDKIPKED 191
Query: 630 GAGYRQLHGESSLF-------SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
+ ++L +F S Q +++GL ++A+NP LHPGD+RV++AVNVP L
Sbjct: 192 ASLEQKLAALPEIFLQVPRTSGSEGGAQYEVIEGLCILARNPSLHPGDIRVVRAVNVPEL 251
Query: 683 HHMVDCVVFPQKGMRYILTM 702
H + D VV PQ G R I +M
Sbjct: 252 HSLRDVVVLPQTGDRDIASM 271
>gi|46133873|ref|XP_389252.1| hypothetical protein FG09076.1 [Gibberella zeae PH-1]
Length = 1721
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 122/403 (30%), Positives = 190/403 (47%), Gaps = 46/403 (11%)
Query: 311 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 370
DL PR TR + + LR GI I + F S+SQL+ S ++ A+
Sbjct: 106 DLQPR-------TRQEVSDYSIRCLRAGISINGVHYNFYGHSNSQLKSRSCFLLAATKEG 158
Query: 371 TAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
+ +I E +G+F +++ V K A R+G FSS+K ++++ D E IPDV+ Y+F
Sbjct: 159 ISRQI-ESLGDFTKMKTVGKKAKRIGLLFSSAKTAMTINPDRCEDIPDVET----ADYIF 213
Query: 431 SDGIGKVSAEFARKVASKCGL--KDN--PPSAFQIRYGGYKGVVAADPTSSKK---LSLR 483
+DG G ++ A++++ + + +D PS FQIRY GYKGVV D K+ L R
Sbjct: 214 TDGCGLIAPSLAQELSRRTRIIFRDTRYTPSVFQIRYRGYKGVVTVDTRMKKQKALLKFR 273
Query: 484 DSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 543
SM+K+ D +++ + FLN + I LL LGI E KQR R D +
Sbjct: 274 KSMKKFSGG----DDHSFAPFSYGFLNDETIILLHALGISQETLLAKQR---RHFDLLRN 326
Query: 544 DPLKAQEALELMSPGENTNILKELLICG---YKPDAEPFLSMMLQTFRASKLLELRTKTR 600
++A L+S ++ + +L+ G KP ++ L+ K + + R
Sbjct: 327 AKTDHRDAFRLLSYSNRPDLAERVLLDGSDSIKPQINSIVNAELKKMLNKKDGQ---RCR 383
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
IF+ R + G D L G+V V+++ H + V V
Sbjct: 384 IFVQKSRLLFGVCDAWDVLREGEVAVKVTMEETGVPHA--------------LKNTEVTV 429
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
+NPCLHPGD + K V P L H+ DC+VF +G R M+
Sbjct: 430 IRNPCLHPGDWQKFKVVERPELAHLTDCIVFSTRGKRPAADMM 472
>gi|358393899|gb|EHK43300.1| hypothetical protein TRIATDRAFT_294361 [Trichoderma atroviride IMI
206040]
Length = 1759
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 125/381 (32%), Positives = 188/381 (49%), Gaps = 37/381 (9%)
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 394
LR GI I + F S+SQL+ + + A+ + +I E +G+F +++ VAK A R
Sbjct: 124 LRTGISIQGVHYNFYGHSNSQLKSRTCYFLAAPKEQISKKI-EGLGDFTKMKTVAKKAKR 182
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL--- 451
+G FS ++ + V ++E IPD IE+G YVF+DG G ++ A++++ + +
Sbjct: 183 IGLLFSVARAAMKVDPKKVEDIPD--IEVGD--YVFTDGCGLIAPALAKELSRRTRIIFR 238
Query: 452 -KDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYES-ELTKLDVLAWSK-YQ 505
PS FQ+RY GYKGVV DPT +K L +R SM+K+ + V+ +SK Y
Sbjct: 239 NMRYTPSVFQLRYRGYKGVVTLDPTMAKGGTWLKMRKSMKKFSGGDDLSFSVVEYSKPYV 298
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENTNIL 564
LN ++I LL LG+ +I +KQ+E L DP A L L P L
Sbjct: 299 FGHLNDEVIVLLDALGVDRKILLRKQQEHFNFLAEAYQDPRAAFRVLCHLDRPD-----L 353
Query: 565 KELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYG 622
E +I P ++ ++ K+L R K RI IP R + G D L G
Sbjct: 354 AERVIIDSLDSVRPSINRLINA-EYDKMLNKRDEQKCRILIPKSRLLFGVCDAWGVLKPG 412
Query: 623 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
Q V+++ + G ++ V+V +NPCLHPGD++ L V P L
Sbjct: 413 QCAVKVT----MDVDGLPYALKGTK----------VLVTRNPCLHPGDLQKLDVVERPEL 458
Query: 683 HHMVDCVVFPQKGMRYILTML 703
H+VDC+VFP G R M+
Sbjct: 459 AHLVDCIVFPTTGRRPAADMM 479
>gi|321261399|ref|XP_003195419.1| hypothetical protein CGB_G5150C [Cryptococcus gattii WM276]
gi|317461892|gb|ADV23632.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 1120
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 131/456 (28%), Positives = 219/456 (48%), Gaps = 43/456 (9%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
LV + V VTP+R+ P+ SN V R + +D +R+ F DE+ D++ D
Sbjct: 367 LVLIRTVLVTPTRLLIGPPQYEPSNSVTRRYHDKLDGIIRVQFTDEE-DRLFIADYMKLV 425
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
S I R+ L+ G++IG F +A S+SQ +E + W ++ + E+R
Sbjct: 426 DSIN--PAVGIMARVRRALQFGLIIGGETFYPVASSASQQKEHAMWFINNKI-IDGLELR 482
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
WMG E VAK+AAR+G FS+S+ +++ ++ E +PD++ + F+DG G
Sbjct: 483 NWMGTVHETV-VAKHAARMGLPFSTSR-IVNMKINIGEELPDIE----RNGRCFTDGCGI 536
Query: 437 VSAEFARKVA----SKCGLKDNPPSAFQIRYGGYKGVVA--ADPTSSKKLSLRDSMRKYE 490
E + A K G+ P SA Q R GG KGV++ + + ++ LR SM K+
Sbjct: 537 AGREVLNQAALALNEKFGINAQP-SAIQFRLGGAKGVLSDWSQLVNEYEIRLRPSMIKFR 595
Query: 491 SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPL 546
S+L L+V+ +KYQ FLNRQ I+++ G+ E IFE + D + + +
Sbjct: 596 SDLADLNVIRIAKYQAAFLNRQFINIMCANGVPHELIIGIFEDAIADIKGFRDRVWNNAI 655
Query: 547 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 606
+ E + N L +L+ G+ + P + + L +L+ + R+ + +G
Sbjct: 656 TEND--EQLIALCNDFPLAQLIKSGFSEN--PLVLDVAAIIECRALQDLKWRARVKLSDG 711
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
++G DET TL G++F Q + S + +V ++V C
Sbjct: 712 VYLIGIADETGTLKEGEIFCQFQ--------------ENDESPPKVVVNEVLVCRAPAC- 756
Query: 667 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
DVR AV+ P L H+ + +VF +GMR + +M
Sbjct: 757 ---DVRRAWAVDRPELRHLKNVIVFSTQGMRDMPSM 789
>gi|393244712|gb|EJD52224.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1061
Score = 163 bits (413), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 142/506 (28%), Positives = 250/506 (49%), Gaps = 85/506 (16%)
Query: 244 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 303
K SSP++ ++ H + VTPS ++ GP+ N SNRVLRH+ + FLR+ F +ED
Sbjct: 259 GKLSSPSV------LFSHHLVVTPSGLHLEGPDPNKSNRVLRHYDQYTQFFLRVRFANED 312
Query: 304 LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM 363
+ PR +Y R+ L+NGI + RKF+FL +S S L + SAW
Sbjct: 313 RLQFR----WPRDVDGESF----VYERVGGILKNGIEVAGRKFQFLGYSLSSLHQYSAWF 364
Query: 364 FASRYG-----------LTAAEIREWMGNFREIRNVAK-YAARLGQSFSSSKETLSVHMD 411
Y +T IR+ +GNF ++ + Y AR+ Q+FS++ T+++
Sbjct: 365 VTDFYAEVEPGSGHRVRVTPQYIRDHLGNFAKVIDCPSLYGARMAQAFSATDPTITLADG 424
Query: 412 EIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFA-----RKVASKCGLK-DNPPSAFQIRYG 464
EIE +PD++ E G+ + SDG G +S E + +++ + + + +A+QIR G
Sbjct: 425 EIEYNVPDIRTETGE---LMSDGCGTISPELSLEMNEQRIHGRTRAEWEKVVNAYQIRVG 481
Query: 465 GYKGVVAADPT-SSKKLSLRDSMRKYES-ELTKLDVLAWSKYQPCFLNRQLISLLSTLGI 522
G KGVV DP +KL LR SM K+++ T ++V ++ +LNR LI L TLG+
Sbjct: 482 GAKGVVGVDPRLEGRKLRLRVSMIKFDALHSTDVEVANIARPARMYLNRPLIMTLETLGV 541
Query: 523 WDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP-----GENTN---ILKEL--LICGY 572
+FE Q VR +A +++ P G+ +L++L + CG+
Sbjct: 542 RRHVFETLQANVVRTAH-------EAGDSIRRFIPNVGKLGDRFQLRFVLEQLVDIGCGF 594
Query: 573 KPDA---------EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL-NYG 622
+ D + F+ ++++ L +++ RI +P +++G +DE L N
Sbjct: 595 RDDCSETDGVVLDDSFVRQLVKSVLWETLRDVKYSARIQVPESWTLLGKVDEHDILTNEK 654
Query: 623 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
+V V + + Y +G+ ++G ++ ++P +HPGDV+++ ++ P
Sbjct: 655 EVMVYVMDSDYP--NGK-------------WLEGPALICRSPVMHPGDVQMVTCISPPQG 699
Query: 683 HH-----MVDCVVFPQKGMRYILTML 703
+++C++F KG R + + L
Sbjct: 700 SDPSRCPLINCIIFSAKGTRSLASCL 725
>gi|401885409|gb|EJT49528.1| hypothetical protein A1Q1_01432 [Trichosporon asahii var. asahii
CBS 2479]
Length = 1000
Score = 162 bits (411), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 132/452 (29%), Positives = 220/452 (48%), Gaps = 54/452 (11%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
+V + V VTP+RV P+ SN V R + +D +R+ F DE ++++ +
Sbjct: 376 IVMIRTVTVTPTRVLVGPPQPETSNSVTRRYSDKLDAIIRVHFTDEG-ERLNVQKFTKPA 434
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIR 376
A + R+ L+ GI + ++ +A S SQ ++ + W F + E+
Sbjct: 435 DDA--CPEKGLMARVRRALQYGIEVAGCRYYPVASSGSQQKDHNMW-FIDHTVIDRPELS 491
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
WMG +E + VAK+AARLG + + D+ ++ + + F+DG G
Sbjct: 492 RWMGQVKE-QVVAKHAARLG----------------LVTVSDL-ADVFRNGHCFTDGCGV 533
Query: 437 VSAEFARKVASKCGLK---DNPPSAFQIRYGGYKGVVAADP--TSSKKLSLRDSMRKYES 491
+ R+ A K PSA Q R GG KGV+A P + ++ +R S K+ES
Sbjct: 534 AGIDVMRQAARSMNNKRKTGEAPSALQFRLGGAKGVLAYWPGMAGNDEILMRPSQTKFES 593
Query: 492 ELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD-----AILTDPL 546
L +L+V+ +KYQ FLNRQ I+++S G+ D +FE+ EA + ++ A+L D
Sbjct: 594 RLKELNVVRIAKYQSAFLNRQFINIMSACGVPDALFEQLFVEATQAIEGLPERAVLRDLT 653
Query: 547 KAQEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 605
K +L+ + T + +++ G+ + P + + + A L +L+ + R+ +
Sbjct: 654 KD----DLVLFQQYTEFPMVQVIDAGFARN--PMIQDLARLVEARALQDLKWRARVKLDM 707
Query: 606 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
G ++G DET L G+VFVQ + + + + +V G VVV + P
Sbjct: 708 GVYLIGVADETGLLKEGEVFVQ---------------YQVTENDEPVVVTGAVVVCRAPA 752
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
LHPGDVR +AV+ P L H+ + VVF KG R
Sbjct: 753 LHPGDVRTARAVDHPQLRHLKNVVVFSIKGAR 784
>gi|74830367|emb|CAI39056.1| RNA-dependent RNA polymerase [Paramecium tetraurelia]
Length = 1367
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 221/464 (47%), Gaps = 56/464 (12%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
LVY RV +TPS + + + V++ +LR ++ FLR+ + DE+ D + +
Sbjct: 521 LVYTRRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDENQDMVLNIPY---- 576
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-SRYGLTAAEI 375
IT+T Y + TL+ I + FE +SSS LR + W + G +I
Sbjct: 577 -----ITQTYYYNFMFPTLK----ILGQHFELFTWSSSSLRAGTCWFIDFNGAGKQRTDI 627
Query: 376 REWMGNFREIR--NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 433
+ +GNF ++ +AK AARLGQ+ S+S V I I D+ + K +++DG
Sbjct: 628 IKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDL---VDKNNKLYTDG 684
Query: 434 IGKVSAEFARKVASKCGLKDNPP-SAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES 491
IGK+S + ++ K + SA QIRY G KG++ D + K + LR SM KY
Sbjct: 685 IGKISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVLDESLEQKTIVLRRSMIKYNP 744
Query: 492 EL---TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL------DAIL 542
K+ +L ++K++ +LNRQ+I LL TL + ++ F++ Q E ++++ DA +
Sbjct: 745 AKGYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKDASI 804
Query: 543 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
E + + L+ + G + + +L + LL+LR KT I
Sbjct: 805 YKYFSVDYCDEQIDLPNIMDALRAYINIGMEDNI--LCQGVLSKLKQRGLLQLRKKTSIL 862
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGY-RQLHGESSLFSSSRSRQRFIVQGLVVVA 661
+ ++G +DE L +++ + Q+ E+ +QG V+V
Sbjct: 863 VEKAARVLGVIDEHNLLQPNEIYCLVQDENNDTQVEPEN-------------IQGEVLVT 909
Query: 662 KNPCLHPGDVRVLKAVNVPAL----------HHMVDCVVFPQKG 695
+NPCLHPGD++ L A++ + +++C+VFP G
Sbjct: 910 RNPCLHPGDIKKLNAISTQEILKRNGSKNPYSQLINCLVFPACG 953
>gi|145498970|ref|XP_001435471.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402604|emb|CAK68074.1| unnamed protein product [Paramecium tetraurelia]
Length = 1343
Score = 162 bits (410), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 129/464 (27%), Positives = 221/464 (47%), Gaps = 56/464 (12%)
Query: 257 LVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRG 316
LVY RV +TPS + + + V++ +LR ++ FLR+ + DE+ D + +
Sbjct: 497 LVYTRRVSMTPSGILYFNKQPEVTSGILRQHYNIVEYFLRVHYEDENQDMVLNIPY---- 552
Query: 317 SSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA-SRYGLTAAEI 375
IT+T Y + TL+ I + FE +SSS LR + W + G +I
Sbjct: 553 -----ITQTYYYNFMFPTLK----ILGQHFELFTWSSSSLRAGTCWFIDFNGAGKQRTDI 603
Query: 376 REWMGNFREIR--NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 433
+ +GNF ++ +AK AARLGQ+ S+S V I I D+ + K +++DG
Sbjct: 604 IKSIGNFTNLKYDEIAKNAARLGQNLSTSISVDCVGGINILIKDDL---VDKNNKLYTDG 660
Query: 434 IGKVSAEFARKVASKCGLKDNPP-SAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYES 491
IGK+S + ++ K + SA QIRY G KG++ D + K + LR SM KY
Sbjct: 661 IGKISQDLIDQIRQKMRVNSKIKISAIQIRYEGAKGLLVLDESLEQKTIVLRRSMIKYNP 720
Query: 492 EL---TKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL------DAIL 542
K+ +L ++K++ +LNRQ+I LL TL + ++ F++ Q E ++++ DA +
Sbjct: 721 AKGYPNKIQILDFNKFRGGYLNRQIIILLLTLQVNEKAFQELQDEYLKKIEDLQMKDASI 780
Query: 543 TDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
E + + L+ + G + + +L + LL+LR KT I
Sbjct: 781 YKYFSVDYCDEQIDLPNIMDALRAYINIGMEDNI--LCQGVLSKLKQRGLLQLRKKTSIL 838
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGY-RQLHGESSLFSSSRSRQRFIVQGLVVVA 661
+ ++G +DE L +++ + Q+ E+ +QG V+V
Sbjct: 839 VEKAARVLGVIDEHNLLQPNEIYCLVQDENNDTQVEPEN-------------IQGEVLVT 885
Query: 662 KNPCLHPGDVRVLKAVNVPAL----------HHMVDCVVFPQKG 695
+NPCLHPGD++ L A++ + +++C+VFP G
Sbjct: 886 RNPCLHPGDIKKLNAISTQEILKRNGSKNPYSQLINCLVFPACG 929
>gi|340521489|gb|EGR51723.1| Hypothetical protein TRIREDRAFT_55637 [Trichoderma reesei QM6a]
Length = 1734
Score = 162 bits (409), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 191/379 (50%), Gaps = 39/379 (10%)
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 394
L+ GI I + F S+SQL+ + ++ A+ + ++ E +G+F +++ VAK A R
Sbjct: 124 LKAGISIHGVHYNFYGHSNSQLKSRTCYLCAASKEDISRKV-EALGDFTKMKTVAKKAKR 182
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL--- 451
+G FS ++ + V ++ IPD IE+G ++F+DG G ++ A++++ + +
Sbjct: 183 IGLLFSVARAAMQVDPKMVQDIPD--IEVGD--FIFTDGCGLIAPHLAKELSRRTRIVFR 238
Query: 452 -KDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESELTKLDVLAWSKYQPC 507
PS FQIRY GYKGVV DPT +K L +R SM+K+ D L++S Y
Sbjct: 239 NMRYTPSVFQIRYRGYKGVVTLDPTMAKGVPWLKMRKSMKKFSGG----DDLSFSPYVFG 294
Query: 508 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 567
LN ++I LL LGI + +KQ+E L +P+ A L ++ E+ E
Sbjct: 295 HLNDEVIVLLDALGISRQTLLRKQQEHFEFLAQAYHNPIVAFRILCHLNMPEDA----EK 350
Query: 568 LICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
+I P ++ +++ K+L R + RI IP R + G D L GQ
Sbjct: 351 VIIDSLDAVRPTINRLVKA-EYDKMLNKRDEQRCRILIPKSRLLFGVCDAWGVLKPGQCA 409
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHH 684
V+++ G Q + ++G V+V +NPCLHPGD++ L V P L H
Sbjct: 410 VKVTMDG---------------DGQPYALKGTKVLVTRNPCLHPGDLQKLDVVERPELAH 454
Query: 685 MVDCVVFPQKGMRYILTML 703
+VDC+VFP G R M+
Sbjct: 455 LVDCIVFPTTGRRPTADMM 473
>gi|403358446|gb|EJY78873.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1379
Score = 162 bits (409), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 147/562 (26%), Positives = 241/562 (42%), Gaps = 106/562 (18%)
Query: 229 SRWLTDQYRKYMTSRSKPSSPAI---SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 285
SR L + YR Y+ S + I + +D + R+ TP+ F + +NRV+R
Sbjct: 418 SRTLLEAYR-YLEKNSGEITLEIQNETENDNDLRQRRIYQTPTLTLFFANQREQTNRVIR 476
Query: 286 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
F++ DNF R+ +++ L K H + + + + ++ + IGD
Sbjct: 477 QFKKYKDNFFRLVLVNDQLQKFHFGSMKQK----------EMLQHMKDLMKQELYIGDSL 526
Query: 346 FEFLAFSSSQLRESSAWMFASRY--GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 403
+ L +S+SQL+ S WM S + I +G F K AR GQ FS++K
Sbjct: 527 AQVLNYSNSQLKNHSVWMVCSTSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTK 586
Query: 404 ETLSVHMD-EIEIIPDVKI-------------EIGKTKYVFSDGIGKVSAEFARKVASKC 449
+ D +E+I D++ + + YVF+DG G +S A ++A
Sbjct: 587 YVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQREGNYVFTDGCGNISELLASEIAQSH 646
Query: 450 GLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 508
L SAFQ+R GG KGV+ P +K+ LR S K+ E L+V+ S + +
Sbjct: 647 QLM--KCSAFQVRIGGVKGVLMLKPDLDGRKVQLRKSQIKFACENWGLEVIRCSTFSQGY 704
Query: 509 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDA-ILTDPLKAQEALELMSPGEN------- 560
LNRQ+I LLS LG+ D +F A+ L+ + L ++ + + S +N
Sbjct: 705 LNRQVILLLSCLGVDDNVFLSHLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRKDENEN 764
Query: 561 ---TNILKELLICGYKPD---AEPFLSMMLQTFRASKLL------ELRTK---------- 598
N +K L + P + F + QT + + + E+RTK
Sbjct: 765 KSKANEMKNELDVFFGPSKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQVF 824
Query: 599 --------------------------TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 632
RI I N +++G +DET TL+ G+++++I+
Sbjct: 825 FLENEPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGS 884
Query: 633 Y----------------RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 676
Y G+ S + + I++G V+V KNPC HPGD+R L+A
Sbjct: 885 YDYDQIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA 944
Query: 677 VNVPA-LHHMVDCVVFPQKGMR 697
V + H+ + +VF KG R
Sbjct: 945 VGEHSTFEHLTNVIVFSSKGCR 966
>gi|342319755|gb|EGU11702.1| RNA-directed RNA polymerase 2 [Rhodotorula glutinis ATCC 204091]
Length = 1904
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 144/470 (30%), Positives = 226/470 (48%), Gaps = 59/470 (12%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V +V T +R GP + +N ++R + R + F+ ++ ED GSS
Sbjct: 1106 VRQVTFTATRALLFGPYLGDTNSIVRAYARP-ELFVSVAVRHED------------GSSL 1152
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL------TAA 373
D + I +R R+G +G R + FLA+SSS L+ SS + F S + L T
Sbjct: 1153 RDRDDSLIASRFSPLFRDGFELGGRSWRFLAWSSSGLKSSSCF-FMSPFRLDDETLITPT 1211
Query: 374 EIREWMGNFREIRNV---AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVF 430
I +G+F AKY AR+ Q+FSSSK +L++ D++ I D+ G F
Sbjct: 1212 FIHRTIGDFTGSETALIPAKYMARIAQAFSSSKPSLTLRPDQMLSIEDITAPDGS---CF 1268
Query: 431 SDGIGKVSAEFARKVASKCGLK----DNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDS 485
SDG+G +S A V K G+K + PP+ FQ R GG KG + DPT K ++LR S
Sbjct: 1269 SDGVGLISPSLANDVVEKLGIKLGKEERPPTCFQFRLGGAKGTLQVDPTLEGKVVALRPS 1328
Query: 486 MRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREA---VRQLDAIL 542
K+ S LT L++ + P +LNR LI+LL LGI ++F K Q +A +R+ A L
Sbjct: 1329 QVKFRSTLTSLEIAGTFEAGPGYLNRPLITLLENLGIPADVFLKLQAKATAKIRKSRASL 1388
Query: 543 TDPLKAQEALELMSPGENTNILKELLICGYKPD---AEPFLSMMLQTFRASKLLELRTKT 599
+K L S + L L D A PF++ L L +++
Sbjct: 1389 PSAVKLPRDWSLASGTRFVSALNLLAKDQATRDAAFANPFVARCLDASVVHALRDIKYLA 1448
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
RI +P +++G +D L +++ +IS + G + +QG +
Sbjct: 1449 RIPLPGCYNLVGVVDVDGCLAQDEIYARIS-----RPDGSTEY-----------LQGTIA 1492
Query: 660 VAKNPCLHPGDVRVLKAVN-VPA-----LHHMVDCVVFPQKGMRYILTML 703
++++P HPGD R+++AV +P + + +CVVFP G R + +ML
Sbjct: 1493 ISRSPTNHPGDCRLVRAVGKLPKGAGERIRGLTNCVVFPVHGPRSLPSML 1542
>gi|393247225|gb|EJD54733.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1245
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 138/472 (29%), Positives = 223/472 (47%), Gaps = 64/472 (13%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 322
V V+PS V GP + SNR+L F ++F+R++F D D R + D
Sbjct: 451 VAVSPSSVSITGPIPDRSNRILHAFGNFQEHFIRVAFTDNDGQTF-------RYDANVD- 502
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGL--TAAEIRE 377
T+ + + +L L+NG +G R FE+LA+S S L++ S WM F G +A+ IR
Sbjct: 503 TQALVRSHVLPILQNGFKLGGRLFEYLAYSQSALKQHSVWMVHPFTDTAGRRHSASTIRA 562
Query: 378 WMGNF-REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
MG F ++ R A+ AR+ +FS+++ + + + PD+ G SDG G
Sbjct: 563 DMGTFTKDERCPARVGARMSLAFSATEPSGELLSSNRRMEPDIG---GDGPACMSDGSGL 619
Query: 437 VS--------AEFARKVASKCGLK-DNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSM 486
+S EF R + + ++ PPS Q+R GG KG + DP + + LR SM
Sbjct: 620 ISIEAMAAVWMEFCRGRSKRTVIRPPPPPSVIQVRVGGAKGTLFVDPMLPGRAVVLRPSM 679
Query: 487 RKYES--ELTKLDV-LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT 543
K+E+ +++V +A++K P +LNR LI +L G+ E F + Q++ V + + T
Sbjct: 680 MKFEAGERFNQIEVCMAFTKPSPAYLNRPLIMVLEARGVPKETFLRLQQDVVERTQ-LAT 738
Query: 544 DPLKAQEAL----ELMSPGENTNILKELL--------ICGYKPDAEPFLSMMLQTFRASK 591
L++ AL L P + + + + Y + F++ L
Sbjct: 739 RTLESAAALLESNGLGGPVGLPTLFRRIRQRFSNFPEVDSYVLTQDAFVARTLDFTVNHV 798
Query: 592 LLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR 651
L L+ + RI IP +++G D LN G++FV I Q+
Sbjct: 799 LRGLKFRGRIPIPFSWTLVGVPDHHGILNEGEIFVCIREEDISQVE-------------- 844
Query: 652 FIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMR 697
++G VVV+++P HPGDV ++KA+ P A ++CVVF KG R
Sbjct: 845 -YLEGDVVVSRSPTCHPGDVMIMKAIGRPPAGTAFATERPINCVVFSTKGAR 895
>gi|443895352|dbj|GAC72698.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1496
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 144/505 (28%), Positives = 234/505 (46%), Gaps = 69/505 (13%)
Query: 223 ECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 282
E C E + + R +++ SP DD L + VTP+RV GP +VSNR
Sbjct: 355 EACAEAT---GNDSRGFLSVLDPTPSPD---DDYLSKTFSIDVTPTRVLLSGPHTHVSNR 408
Query: 283 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI-------TRTRIYTRILSTL 335
V+R + +F R++F +ED RG + T + I +R+L L
Sbjct: 409 VIRAYSDHWHHFARVTFSNED-----------RGGATTIKANYGFVESERYIQSRVLKIL 457
Query: 336 RNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG--LTAAEIREWMGNFREI-RNVA 389
+ GI + R +E LA+SSS + + W F + G + A IR +G+F ++ R A
Sbjct: 458 QRGINVAGRHWEMLAWSSSSMSAHTVWFVTPFRDKDGTHVHAEVIRRELGDFTDVARYPA 517
Query: 390 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAE-----FARK 444
Y ARL Q+FS++ T+ V I +PD IE K ++DG+G++S E + +
Sbjct: 518 MYGARLSQAFSATARTVEVDSSLILHMPD--IETPDRKMAYTDGVGQISPELMAEVWEKY 575
Query: 445 VASKCG-------LKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKL 496
V S G K PSA QIR GG+KG + +P K+L+LR SM K+ S L
Sbjct: 576 VTSALGEPRKRKFFKAAAPSAIQIRIGGHKGCLTVNPRLQGKQLALRPSMSKFVSPHQDL 635
Query: 497 DVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 555
+V S + LNR LI+ L G+ Q+EA+ + T + +
Sbjct: 636 EVANSSARCLSAKLNRPLINALDDRGVPATALLDIQKEAIAHIGRARTHFDETAKLCSAY 695
Query: 556 SPGENTNI------LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
S G ++ L + + ++ F ++ + A+ L +++ K RI + G ++
Sbjct: 696 SFGTGCDLHILFQKLHKHGMGATSIHSDSFFLVLAKAVIAAALGDMKRKARIPV-RGVTL 754
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 669
+G DE L G+VF Q+ Q+ R+R +V G ++ ++P + PG
Sbjct: 755 IGVADEFAFLKEGEVFAQVEHVDLGQV------------RRRVLV-GTKLIGRSPTVDPG 801
Query: 670 DVRVLKAVNVPALHHMV---DCVVF 691
D+ ++K V P H ++ + VVF
Sbjct: 802 DIAMVKCVRPPPGHPLLQLRNVVVF 826
>gi|302698389|ref|XP_003038873.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
gi|300112570|gb|EFJ03971.1| hypothetical protein SCHCODRAFT_64962 [Schizophyllum commune H4-8]
Length = 984
Score = 160 bits (406), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 145/476 (30%), Positives = 224/476 (47%), Gaps = 62/476 (13%)
Query: 255 DGLVY--VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDI-DNFLRISFIDEDLDKIHSTD 311
DG V+ +H V VTP+ + GP SNR++R + D FLR+SF++E
Sbjct: 403 DGSVFDSLH-VIVTPTTMILEGPFPERSNRIIRMYDAKYHDCFLRVSFVEEG-------R 454
Query: 312 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF------A 365
L R D RT I RI L+ G+ I KFEFLA+S S L+E + W
Sbjct: 455 LQYRFDREVD-GRTFIRERIGPLLKKGLHIAGHKFEFLAYSQSALKEHAVWFVKPFRPDG 513
Query: 366 SRYGLTAAEIREWMGNFREIRN---VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 422
R + AA I +G+F ++ A+YAARL Q+F+++ ++ V +EI D+
Sbjct: 514 QRADVNAATIIAGIGDFSTSKDRFCPARYAARLSQAFTATDASVFVEAEEIGYHDDISTS 573
Query: 423 IGKTKYVFSDGIGKVSAEFA-------RKVASKCGLKDNPPSAFQIRYGGYKGVVAAD-P 474
G Y F+DG+G +S E A R+ + P++FQ+R G KG+++ D
Sbjct: 574 DG--AYHFTDGVGTMSKEMARDTWTELRRTRKRARKSKGTPASFQVRLMGSKGMLSVDYK 631
Query: 475 TSSKKLSLRDSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQR 532
+ + LR SM K+E+ + L++ A+ + +LNR LI LL LG+ E F K Q
Sbjct: 632 LRGRAVCLRPSMIKFEAPDSLNLEIARAFDRPGKYYLNRPLIMLLEGLGVPYETFLKYQD 691
Query: 533 EAVRQLDAILTDPLKAQEALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQT 586
AVR A LE G + + L++L I DA F ML+
Sbjct: 692 LAVRDAHRATESLEHAARMLEAFGLGTSFRLPSVLLNLEKLGIDHLPGDA--FYDRMLEF 749
Query: 587 FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSS 646
L L+ RI IP +++G D R L G+VF + ++
Sbjct: 750 AINHVLRVLKNHARIPIPGAYTLVGVADVHRYLAEGEVFACVKEVDSNRIE--------- 800
Query: 647 RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGM 696
++G ++++++P +HPGDV+V++A+ P A + + VVF KGM
Sbjct: 801 ------YLEGDILISRSPTIHPGDVQVVRAIGRPPAGSPFAQEPLANTVVFSVKGM 850
>gi|308469043|ref|XP_003096761.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
gi|308241452|gb|EFO85404.1| hypothetical protein CRE_23681 [Caenorhabditis remanei]
Length = 1721
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 139/514 (27%), Positives = 231/514 (44%), Gaps = 99/514 (19%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
+G V +V +TP+R+ F PE ++NR + D +R +F D++ K+ L
Sbjct: 475 EGYRKVRKVILTPTRIIFLAPETIMANRAINGADHDGTRIIRATFRDDNFQKMRYNQL-- 532
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTA-- 372
R + R L+ LR+G +I R F +LA S+SQ+R+ A+ F R+ T
Sbjct: 533 ---------RDLLEERTLNHLRDGFVIYGRGFSYLASSNSQMRDGGAY-FMERWNKTQLA 582
Query: 373 --------------------AEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDE 412
+ R+ +G F + ++ K ARLGQ F+ ++ V +
Sbjct: 583 EYKERYPRIRFPDPSFKPKIIDYRKKLGKFSKTGSIPKAMARLGQCFTQARRCDGVEICL 642
Query: 413 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA 472
+ V G +Y F+DG+G +SA A K+ +K PSA+QIR+ G KG++A
Sbjct: 643 QDYTMIVDAVGGAGQYKFTDGVGCISARLAAKICQSISIK-CLPSAYQIRFRGLKGMLAI 701
Query: 473 DPTSSK-----------------------------KLSLRDSMRKYESELTK-----LDV 498
+P+ + K R S K+ S K +++
Sbjct: 702 EPSIDEIADYFLNIYRKGFMIKESIESADLEPYTFKCLFRGSQLKFHSSRGKVEEWPIEM 761
Query: 499 LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILT-----------DPLK 547
+ WS P LN+ I++L + + K + +++ +L+ + +
Sbjct: 762 VKWSSPTPVTLNKPFINILDQVSAMQSL--KCHKRVTARIEELLSMEMVNYSKWIVNEEQ 819
Query: 548 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN-- 605
+ LE M + L+ G+ AEPF +++ S + L K +I IP+
Sbjct: 820 CRNRLEGMPRRVHFATLERKY--GFVLSAEPFFRSIVKAAIDSSMSRLLRKLQIPIPSHL 877
Query: 606 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL--FSSSRSRQRFIVQGLVVVAKN 663
GRS+ G +DET L YGQVFV+ + + +S L F ++ + G V+V K
Sbjct: 878 GRSVFGVVDETGQLQYGQVFVRYT----ENVDNKSPLKDFGTT-------LTGKVLVTKF 926
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
P L GDVR+ +AV++P L+H+ D +VFPQ G R
Sbjct: 927 PSLCEGDVRMYEAVDIPELYHLKDVIVFPQTGPR 960
>gi|330798142|ref|XP_003287114.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
gi|325082892|gb|EGC36360.1| hypothetical protein DICPUDRAFT_54684 [Dictyostelium purpureum]
Length = 2341
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 133/467 (28%), Positives = 214/467 (45%), Gaps = 54/467 (11%)
Query: 234 DQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
DQYR + +S S +V V VTPSR+ F P++ +NR LR F + N
Sbjct: 1163 DQYRHKINEKSTKSKE-------FAFVKEVFVTPSRIIFKEPKLERTNRALRRFGSE--N 1213
Query: 294 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
F+ + +E L+ + L+P+ +YT I +GI + K+ ++ S+
Sbjct: 1214 FILLKVANESLEPLRG--LNPKHP---------LYTTIQKYFDSGIELSGTKYYYVGNSN 1262
Query: 354 SQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI 413
SQ + SAW + IR W + + K+A L F+++ + +
Sbjct: 1263 SQHSDFSAWFVNDLAHVFL--IRNWSQDQSLVMQPRKFARGLSLMFTTTSPSFVIPQRNY 1320
Query: 414 EIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-VAA 472
II D+ I G F++G G + + +R++ K + A+QIR GG KG+ V +
Sbjct: 1321 YIIDDI-ISNGHN---FTEGCGFIGKDLSRRINELFHYK-SSTCAYQIRIGGAKGMLVVS 1375
Query: 473 DPTSSKKLSLRDSMRK----YESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFE 528
+ + +R S K + E L++ + S C LNRQ+I+LLS G+ D +F
Sbjct: 1376 ETVDPDGVYIRKSQIKTKPAHYDEHRTLEICSISTSSNCKLNRQVIALLSCKGVKDHVFY 1435
Query: 529 KKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR 588
Q + L + L D +++ L+ N N ELL + F+ +L T
Sbjct: 1436 SIQDRYMNYLASTLNDVEYSRKVLDEFFKDLNDN---ELL-------QDNFIRRILITHY 1485
Query: 589 ASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS 648
+ + K+ + I R+++G D TR L +F+QI S
Sbjct: 1486 KLSIERAQQKSHLDIEKSRNLLGVTDPTRLLPADCIFIQIEQE------------EEDGS 1533
Query: 649 RQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
R ++G VVV KNPC HPGD+R+L+AVN+ ALHH+ D +VF G
Sbjct: 1534 RHYVPLKGDVVVTKNPCTHPGDLRILRAVNIEALHHLKDVIVFSTYG 1580
>gi|353236430|emb|CCA68425.1| related to NAM7-nonsense-mediated mRNA decay protein (RdRP)
[Piriformospora indica DSM 11827]
Length = 678
Score = 159 bits (402), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 122/387 (31%), Positives = 196/387 (50%), Gaps = 53/387 (13%)
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE---WMGNFREIRN 387
I L +G+ + +K+ F S+SQLR S ++ R G + A+I +G+F+ I +
Sbjct: 93 IARCLTSGVTLNGKKYFFYGHSNSQLRSHSCFL---RQGRSEADIHSRILSLGDFKSIDS 149
Query: 388 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
AK A R+G FS++++ + IPD + +G T +FSDG G +S +AR +A
Sbjct: 150 PAKLAKRIGLLFSAAEQDSVLDPSHTRDIPD--LMVGDT--LFSDGCGLISQAYARLLAK 205
Query: 448 KCGL----KDNPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYESELTKLDVL 499
K PS FQIRY GYKGV+ P + + R SMRK+ D L
Sbjct: 206 KKQAIFRQVKYVPSVFQIRYKGYKGVLMLHPPLDSQNDGYVHFRKSMRKFTG--VPNDTL 263
Query: 500 AWSKYQPCF----LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 555
+ KY + LN ++++LLS+LGI DE+ K R + L + T+ AL+ +
Sbjct: 264 SIIKYSVPYTYGRLNNEIVALLSSLGISDEVLLGKLRAYMSWLRTVCTN---LSSALDFV 320
Query: 556 SPGENTNILKELLI-----CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
S + ++++ +L+ G + + + L ++ F+ K+ + K R+ + N R +
Sbjct: 321 SSIDKHSLVERILLEGIDSAGIQRELKKALKQEIEKFK--KVDIEKKKLRVLVNNSRRLF 378
Query: 611 GCLDETRTLNYGQVFVQIS--GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
G D + L G+VFV+++ AG R +H S V++ +NPC+HP
Sbjct: 379 GVCDPFQILREGEVFVRVTMPHAGPRTIHSCS-----------------VLIFRNPCMHP 421
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKG 695
GD L+AV+ P L H+VDCVVF KG
Sbjct: 422 GDCLKLRAVDKPELRHLVDCVVFASKG 448
>gi|452978294|gb|EME78058.1| hypothetical protein MYCFIDRAFT_145022 [Pseudocercospora fijiensis
CIRAD86]
Length = 1703
Score = 159 bits (401), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 118/379 (31%), Positives = 191/379 (50%), Gaps = 39/379 (10%)
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 394
L+ G+++ + F S+SQL+ S ++FA+ + ++ E + +F +++V K A R
Sbjct: 113 LKTGVVLNGLAYHFFGHSNSQLKSRSCFLFAASKEVIKEKV-EALADFSNMQSVGKKAKR 171
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL--- 451
LG FSS++ L + + I DVK+ YVF+DG G ++ A++VA + +
Sbjct: 172 LGLLFSSAEHALELQPERCTDIDDVKL----GDYVFTDGCGLIAVRLAKQVAQRKRIVYR 227
Query: 452 -KDNPPSAFQIRYGGYKGVVAADPT--SSKKLSLRDSMRKYES-ELTKLDVLAWSK-YQP 506
K PS QIRY GYKGV+ DPT ++ R SM+K + + V+ SK Y
Sbjct: 228 NKRYLPSVLQIRYRGYKGVLMIDPTLTGQTQVLFRKSMKKLKDVKDLSFSVVEHSKPYTF 287
Query: 507 CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE 566
FLN +++ LL+ LG+ + KQ E ++ LD +A A +S ++ ++
Sbjct: 288 GFLNDEIVVLLNALGVSTDTILSKQTEYLQFLDEAYNGEPRA--AFRFLSYQNELDLAEK 345
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLEL--RTKTRIFIPNGRSMMGCLDET------RT 618
LLI G + S++ + S++L + RI + R + G D T
Sbjct: 346 LLIEGVHSVRKSLRSLVKTEY--SRMLNKYEEQRCRIMLTQSRLLFGVCDPTGRDGGMSR 403
Query: 619 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
L G FV+I+ G GE R ++ V+V +NPCLHPGD++ +AV+
Sbjct: 404 LPPGTCFVRITLDG----DGEP----------RTLINTEVLVTRNPCLHPGDLQKFRAVD 449
Query: 679 VPALHHMVDCVVFPQKGMR 697
VP H+VDC+VFP +G R
Sbjct: 450 VPEFSHLVDCIVFPIRGSR 468
>gi|392597023|gb|EIW86345.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1223
Score = 158 bits (400), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 138/476 (28%), Positives = 224/476 (47%), Gaps = 59/476 (12%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
DG + + TPS GP + SN VLR F + + FLR+SF DE+ + D
Sbjct: 430 DGAYEAYHLIFTPSTYILDGPLPDQSNSVLRRFG-NHECFLRVSFQDENRAPLRR-DFE- 486
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGLT 371
S +++ + R L G + R +EFL +S S LRE S W F S G+T
Sbjct: 487 --YSISELMQKRFRPIFL----GGHKVAGRHYEFLGYSMSGLREHSVWFVTPFTSDKGIT 540
Query: 372 --AAEIREWMGNFREIR-NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 428
A IR +G+F E++ A+ AR Q+FS++ ++++ EI+ + D+ G
Sbjct: 541 MDAETIRGQLGDFSELQYKPARLGARWSQAFSTTDPSVTLERREIQYVNDITSASGN--- 597
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDN-------PPSAFQIRYGGYKGVVAADPT-SSKKL 480
+DG +S E AR++ + PPSAFQ R GG KGVV +P + + +
Sbjct: 598 CMTDGCSSISIELAREIWTSLNRTRRRTFPLKFPPSAFQFRLGGAKGVVVQNPDLNDRVV 657
Query: 481 SLRDSMRKYES-ELTKLDVLAWS-KYQPCFLNRQLISLLSTLG---IWDEIFEKKQREAV 535
LR S RK+E+ + DV + + + +P FLNR LI++L LG D I E Q +
Sbjct: 658 CLRKSQRKFEAPNVLTFDVQSHTARPRPMFLNRPLIAILEHLGEQDTMDRILEL-QHADI 716
Query: 536 RQLDAILTDPLKAQEALELMSPGEN-------TNILKELLICGYKPDAE-----PFLSMM 583
++ + + A + L++ G + N+ KEL + + +++ +
Sbjct: 717 QEAQGVRSSFRDAAKMLQVHGLGASFHLTSLFGNLAKELNMRVWTRESDDGWQNEVVIDA 776
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 643
L+ L EL+ + I +P ++MG DE L G++F +
Sbjct: 777 LRCISTHALRELKYRAHIRVPGSYTLMGVSDEWNCLRPGEIFATVRDI------------ 824
Query: 644 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYI 699
R+ + G V V ++P +HPGD++V+ AV P L H+ + VVF +G R +
Sbjct: 825 ---RNGLDKPIVGRVAVTRSPQIHPGDIQVVTAVRRPELEHLTNVVVFSTQGDRAL 877
>gi|169844306|ref|XP_001828874.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
gi|116509986|gb|EAU92881.1| RNA-directed RNA polymerase 2 [Coprinopsis cinerea okayama7#130]
Length = 1232
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 144/496 (29%), Positives = 234/496 (47%), Gaps = 67/496 (13%)
Query: 247 SSPAISLDDGLVY-VHRVQVTPSRVYFCGPEINVSNRVLRHFR-RDIDNFLRISFIDEDL 304
++P + DG +Y V +TP+++ GP SNRV+R + R ++FLR++F DE
Sbjct: 409 TTPTLEPTDGSLYQAQHVTITPTKILLEGPFPERSNRVIRAYEPRHQESFLRVTFADEGR 468
Query: 305 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 364
+ S D R R R +L NG+ I R F FLA+S S L+E S W
Sbjct: 469 LQYRSND---RELDHEAFVRERFGEFLL----NGLTIAKRHFRFLAYSQSALKEHSVWFV 521
Query: 365 A----SRYGLTAAE-IREWMGNF-------REIRNVAKYAARLGQSFSSSKETLSVHMDE 412
+++GL AE I +GNF + + A+YAARL Q+F+++ + ++
Sbjct: 522 KPFVDTKHGLVNAESIIHSLGNFDGLDFDSQLMHCPARYAARLSQAFTATDACI---IEV 578
Query: 413 IEIIPDVKIEI---GKTKYVFSDGIGKVSAEFARKV-------ASKCGLKDNPPSAFQIR 462
EII IE+ KY F+DG+G +S E AR++ + P+A+Q+R
Sbjct: 579 EEIINGRDIEVVSPEGQKYCFTDGVGTLSPELAREIWKHLKRTKRRARSVKGHPAAYQVR 638
Query: 463 YGGYKGVVAAD-PTSSKKLSLRDSMRKYESELTKLDVLAWS--KYQPCFLNRQLISLLST 519
+ G KG+++ D + LR SM K+E+ ++ +A S + P FLNR LI+LL
Sbjct: 639 FMGSKGMLSVDYRLQGSTIYLRPSMIKFEAPNSRAIEIARSFDRPTPYFLNRPLITLLEG 698
Query: 520 LGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN------TNILKELLICGYK 573
LG+ F+ Q AVR+ + A L+ G + N L +L I
Sbjct: 699 LGVPLSTFKFFQDRAVRETQQAASSLATAAAMLDTYGLGASFRLPSVMNSLNKLGIPVLN 758
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 633
D FLS ++ L L+ RI +P +++G D R L Q+F +
Sbjct: 759 QDR--FLSRAMEYAINHILRLLKNHARIPVPGAWTLVGVADVHRFLQPRQIFAYVKPLNS 816
Query: 634 RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVD 687
R ++ ++G V+++++P +HPGDV++++A+ P A + +
Sbjct: 817 RGIY----------------LEGPVLISRSPTIHPGDVQLVQAIGHPPPDSPFAHEPLAN 860
Query: 688 CVVFPQKGMRYILTML 703
VVF G R + + L
Sbjct: 861 TVVFSVLGDRPLPSCL 876
>gi|299753212|ref|XP_002911846.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
gi|298410195|gb|EFI28352.1| calcium:hydrogen antiporter [Coprinopsis cinerea okayama7#130]
Length = 1681
Score = 157 bits (398), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 139/492 (28%), Positives = 229/492 (46%), Gaps = 61/492 (12%)
Query: 252 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 311
SLD G V TP+RV GP SNR++R + D FLR+ F DED
Sbjct: 880 SLDRGTFPCCHVTFTPTRVLLEGPCPTQSNRIIRKYAGFEDKFLRVDFRDED-------R 932
Query: 312 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA--SRYG 369
L R D + R+ + L+ G + R FEFLA+SSS LRE + W + + G
Sbjct: 933 LQYRWDREVD-GSVFVRDRVGTVLKLGFELAGRTFEFLAYSSSALREHAVWFMSPFKKDG 991
Query: 370 LT--AAEIREWMGNFRE---IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 424
+ A IR +G+F+ ++ + YAARL Q+F+++ ++ + E E + D +G
Sbjct: 992 VIVDAESIRNSVGDFKGTELLKRPSMYAARLAQAFTATDPSVKIRRGEWEDVDD----LG 1047
Query: 425 KTKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGVVAADPTSSK----- 478
+ Y+F+DG+G +S+ A ++ + G K+ P AFQIR+ GYKG+V+ D
Sbjct: 1048 EKPYLFTDGVGTISSALADRIWAAVGRKNQRRPDAFQIRFLGYKGMVSVDKELDNHPHGI 1107
Query: 479 KLSLRDSMRKYESE-----LTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQRE 533
++ LR SMRK+E++ ++S +LNR L+ LL LG E F + Q
Sbjct: 1108 QMRLRPSMRKFENKGEEEDAEIEIAQSFSSPNAAYLNRPLVMLLEDLGARKEDFLRLQNL 1167
Query: 534 AVRQ---LDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE--------PFLSM 582
+ +D L K L P +L++L G + PFL +
Sbjct: 1168 EIADACTIDESLEQFQKFMSGHGLGRPFGFQYLLRKLWNLGLDLSSNKKGSSIDTPFLHL 1227
Query: 583 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG--ES 640
+ L +++ RI IP+ ++G DE G + + GY+ ++ E
Sbjct: 1228 LRSVAINDVLRDIKHSARIKIPDSYLLVGIADE------GPAYEK---RGYKNVYSLREG 1278
Query: 641 SLFSSSRSRQR---FIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVF 691
++++ + + +QG V ++++P H GDV+ + A+ P A + + VV
Sbjct: 1279 NIYACIQRHEDDEPTYIQGTVSISRSPVAHRGDVQRVYAIGEPPAGMFCAFRGLRNVVVL 1338
Query: 692 PQKGMRYILTML 703
P G R + + L
Sbjct: 1339 PSVGDRSLASCL 1350
>gi|171681273|ref|XP_001905580.1| hypothetical protein [Podospora anserina S mat+]
gi|170940595|emb|CAP65823.1| unnamed protein product [Podospora anserina S mat+]
Length = 1721
Score = 157 bits (397), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 116/383 (30%), Positives = 188/383 (49%), Gaps = 44/383 (11%)
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAAR 394
LR GI I + F S+SQL+ + + +A + ++ + +G+F +++ VAK A R
Sbjct: 126 LRTGISIQGVHYNFYGHSNSQLKSRTCFFYAGSPEEISRKVND-LGDFSKMKTVAKKAKR 184
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL--- 451
+ FS+ + + + +E IPD++ Y+F+DG G +S AR++A + +
Sbjct: 185 ISLLFSTGSVAMLIPPERVEDIPDIET----ADYIFTDGCGLISPNLARELARRDRIIFR 240
Query: 452 -KDNPPSAFQIRYGGYKGVVAADPTSSKK-----------LSLRDSMRKYES-ELTKLDV 498
+ PS FQIRY GYKGVV D T + L LR SM+K+ + V
Sbjct: 241 NRRYTPSVFQIRYRGYKGVVEVDQTMPRPKNKSSDAPPIWLKLRKSMKKFSGGDDYSFSV 300
Query: 499 LAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 557
+ +SK Y +LN + I LLS LGI + F +KQ E + L+ DP + A +S
Sbjct: 301 VEYSKPYTYGYLNDESILLLSALGITHKTFHQKQNEHFQFLEEATRDP---RAAFRFLSY 357
Query: 558 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDE 615
+ +++L+ A+ + +++ K+L R K RI IP R + G D
Sbjct: 358 ANMPEMAEKILMADNVEHAQSKVKALVKA-EYGKMLNKRDDQKCRILIPQSRLLFGVCDA 416
Query: 616 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVL 674
L G+ V+++ LF Q ++G+ V+V +NPCLHPGD++
Sbjct: 417 WDCLKEGECAVKVT------------LFEDG---QPAALKGMEVLVTRNPCLHPGDMQKF 461
Query: 675 KAVNVPALHHMVDCVVFPQKGMR 697
+ V P L H+ DC+VF +G R
Sbjct: 462 RVVERPELAHLTDCIVFSSRGRR 484
>gi|409046080|gb|EKM55560.1| hypothetical protein PHACADRAFT_173707 [Phanerochaete carnosa
HHB-10118-sp]
Length = 876
Score = 156 bits (395), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 133/471 (28%), Positives = 218/471 (46%), Gaps = 65/471 (13%)
Query: 265 VTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR 324
VTPS V GP + NRV+R + R+ FLR+ F DE L R D R
Sbjct: 421 VTPSTVRLEGPFLEQCNRVIRKYARNTSCFLRVRFADE-------ARLQFRSEREVD-CR 472
Query: 325 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-------------RYGLT 371
I+ R + LR G++I R F FL ++ + L+E +AW S +T
Sbjct: 473 AFIHNRFGNVLRRGLVIAGRHFHFLGYTQASLKEHTAWFVRSFKQPAVTSDGTSCEETVT 532
Query: 372 AAEIREWMGNF-------REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 424
A I +G F I A+Y AR Q FSS+ ++++ +D+IE++ D+ G
Sbjct: 533 ADTIIAGLGVFDGILYDPELIMCPARYGARQAQCFSSTSASVTIDLDDIEVVEDIVDADG 592
Query: 425 KTKYVFSDGIGKVSAEFARKVASK-CGLKDNPPSA-----FQIRYGGYKGVVAADP-TSS 477
+ F+DG+G +S A ++ ++ C PPS FQIR G KG+V+ D
Sbjct: 593 ERS--FTDGVGTISPNLAAEIWTRLCAASGRPPSERGPRRFQIRIQGAKGMVSVDHLLQG 650
Query: 478 KKLSLRDSMRK-YESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWD--EIFEKKQRE 533
+KL LR SM K Y ++ L++ A+ K +LNR L+ LL L I + + Q
Sbjct: 651 RKLCLRPSMIKFYAADSRTLEIADAFVKPSKFYLNRPLVMLLEELDILGGYDFLKFLQES 710
Query: 534 AVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFRAS 590
V + +A + A + + + G +N+ +EL G + F +L R
Sbjct: 711 VVEKTEAAVQSLYAAADLFDDFNLGRTYDLSNVFRELHHMGIATLDDTFSQQVLCFGRHH 770
Query: 591 KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 650
L +L+ + RI +P+G +++G D L G++F A G+ ++
Sbjct: 771 VLRDLKYRARIPVPSGWNLVGVADIHGCLEEGEIF-----ACVIPYEGQEPIY------- 818
Query: 651 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHMVDCVVFPQKG 695
+ G +++++P +H GDV+V++A+ P + + + VVF KG
Sbjct: 819 ---LHGPTLISRSPVIHRGDVQVVRAIGPPPPGSPFEIEPLHNSVVFSTKG 866
>gi|402594185|gb|EJW88111.1| hypothetical protein WUBG_00980 [Wuchereria bancrofti]
Length = 902
Score = 155 bits (392), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 202/420 (48%), Gaps = 57/420 (13%)
Query: 252 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTD 311
S D+G V + +TP+R+ PE+ + NRVLR F D+ LRI F D+D +
Sbjct: 464 SADEGFQRVRKAVITPTRMLLVVPELLMGNRVLREFDESGDSALRIQFRDDDGAHLR--- 520
Query: 312 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLT 371
R + I T I+ +L G+ I DR F +LA S+SQ+R++ + F
Sbjct: 521 ---RSRAGLYIIETTIHNCLL----RGVHISDRHFVYLASSNSQMRDNGCYFFNDGVDGK 573
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKET-LSVHMDEIEIIPDV---KIEIGKTK 427
+IR+ +G F N+ K +R+GQ F+ SKE+ +++ + DV K G+
Sbjct: 574 VKKIRDKLGKFDHT-NIPKLMSRMGQCFTQSKESDVTLRRRKYNKTYDVIGGKDSCGEP- 631
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS------SKKLS 481
++FSDG+GK+S +FA ++A+ GL PS FQ RY G KGV++ DP +++
Sbjct: 632 FIFSDGVGKLSEDFAEQIANDLGLGKCVPSCFQFRYRGLKGVLSVDPALRQRRLWAERNG 691
Query: 482 LRDSMRKYESELTKLDVL---AWSKYQ--------------PCF--LNRQLISLLSTLG- 521
L D K E ++ LD+L + K+ P F LNR LI++L +
Sbjct: 692 LEDKHAKTE-KVNDLDILFRPSQDKFHAPRKEIIEIVKYSCPTFVYLNRPLINILDQVSD 750
Query: 522 ---------IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGY 572
I + I R+ ++ DA++++ + +E L N L L G+
Sbjct: 751 MQGFDVHSRIVNRIHGLLDRQLLKLSDALMSED-RCRERLAEFPRRINVQYLS--LARGF 807
Query: 573 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISG 630
EPF +L L + +K I IP GR+M G LDET L YGQVFVQ +
Sbjct: 808 TLTQEPFFHGLLIASVRFALQKQLSKEHIQIPTNLGRTMFGILDETGLLQYGQVFVQFTN 867
>gi|429964430|gb|ELA46428.1| hypothetical protein VCUG_02106 [Vavraia culicis 'floridensis']
Length = 2289
Score = 154 bits (389), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 152/536 (28%), Positives = 224/536 (41%), Gaps = 143/536 (26%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
+ V V P + P+ N+SNR+LR+F N +RI+F D
Sbjct: 743 IRTVHVHPLAIVCMYPKNNLSNRILRNF----SNMIRITFKD------------------ 780
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG-----LTAAE 374
T T Y R + NGI I DR + F+A SSSQLR +SAW F S Y + +
Sbjct: 781 TKDESTMEYIR--EIMSNGITI-DRPYYFVATSSSQLRANSAW-FISPYRKNNVLIGSDY 836
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSV--HMDEIEIIP---DVKIEIG----- 424
+R WMG N+ KY R+G SS+ + +++E +I+ + G
Sbjct: 837 VRNWMGVI-NCDNIGKYMIRVGLGLSSTFNMFEIVDYVEEDDIVSYGNSGSVSYGNSGSV 895
Query: 425 ------------------------------------KTKYVFSDGIGKVSAEFARKVASK 448
+YV++DGIG++S A VA K
Sbjct: 896 STSNSGSVSTSSNKNNNSSTSNSSTINTTNAITNNVNDEYVWTDGIGRISNRVADMVAKK 955
Query: 449 CGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 508
L + P+AFQIR+ GYKGV+ L LR SMRK++S L+V+++S+ C+
Sbjct: 956 LKLT-STPTAFQIRFAGYKGVLVR-ANIPHDLMLRKSMRKFKSTYNVLEVVSYSQSIECY 1013
Query: 509 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 568
LNRQ+I +L LG+ F Q E + + + L I K
Sbjct: 1014 LNRQIIMILEGLGVPKHNFICLQNEYLMHMYRAINHSL----------------IGKYCR 1057
Query: 569 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 628
I G +++ + FR E+ K RIF+ NG +MG +DE L +VF++I
Sbjct: 1058 ISGVALVDRMSGALLGRLFR-----EMCAKGRIFVKNGIVLMGVIDEEGVLGENEVFLRI 1112
Query: 629 -------SGAGYRQLHG--------------ESSLFSSSRS------------------- 648
SG +++ E +L RS
Sbjct: 1113 YEDDGDVSGGRSKRMRSNEIGAEEMRKKELFERALSVVDRSGVGTADSSADDINTSTGGG 1172
Query: 649 --RQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
R +V G +VAKNPCLHPGD+R ++ V L H + +VF +KG R + M
Sbjct: 1173 VLRDDGVVVGGAIVAKNPCLHPGDIRKVQCVYKKELMHYKNVLVFSKKGRRPVFNM 1228
>gi|392587026|gb|EIW76361.1| RdRP-domain-containing protein, partial [Coniophora puteana
RWD-64-598 SS2]
Length = 935
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 155/589 (26%), Positives = 258/589 (43%), Gaps = 95/589 (16%)
Query: 168 ALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE 227
+L + + F++ L+ NG LL++ + P +S EH D L E
Sbjct: 55 SLDWPVAFQVAALLHNG-----LLNTQEIESIRPIITQLSNKSAEHTGDTLRLFTEKTRS 109
Query: 228 PSRW-----LTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNR 282
+ + L D+ Y S +P G + V +TP+R+ GP I SNR
Sbjct: 110 QTSFRQPLELLDELVNYRASNQPRRTPPA----GHFFCSHVTITPTRMLLEGPYITQSNR 165
Query: 283 VLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIG 342
V+R + + D+F+R+ F +E+ K R D+ + +R+ + L+ G+ +
Sbjct: 166 VIRKYDQFKDHFIRVEFREENRQKY-------RWEREVDVLEF-LTSRVGAKLKGGVDVA 217
Query: 343 DRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV-AKYAARLG----- 396
R+F F+A+S S LR S W +I + +GNF N AK AAR+G
Sbjct: 218 GRRFSFVAYSPSALRNHSLWFVCEEGFRPPVQILKELGNFSATTNQPAKRAARMGVSTNA 277
Query: 397 ------------QSFSSSKETLSVHMDEIEIIPDV---KIEIGKTKYVFSDGIGKVSAEF 441
Q+FS+++ ++ V D+I IPD+ + +VF+DGIG +S +
Sbjct: 278 CYVPQCTKASFQQAFSATQPSIKVSKDQIVEIPDITGPHNNPARPPHVFTDGIGTISPKL 337
Query: 442 ARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY----ESELTKL 496
++ + P AFQ+R G KGV D K + R SM+K+ ESE ++
Sbjct: 338 RDRICEALSIS-TKPDAFQVRCAGLKGVFVVDHQLEGKIMCPRPSMKKFLPLDESEDAEI 396
Query: 497 DVL-AWSKYQPCFLNRQLISLLSTLGIWDEIF----------EKKQREAVRQLDAILTD- 544
+++ A+ K FLNR L+ +L G+ E F + ++V Q A+L
Sbjct: 397 EIVRAFDKPGRSFLNRPLVMVLEDRGVKTEGFLELFNDAVADARTAHDSVDQFVAVLQKH 456
Query: 545 ----PLK-AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR----ASKLLEL 595
P + Q L+L + G L+ D E + L R L ++
Sbjct: 457 RLGIPYRLDQTLLKLKALG---------LVLRTGQDQESLDTDFLARVRLCVIKHILRDI 507
Query: 596 RTKTRIFIPNGRSMMGCLDETRT-LNYGQ--VFVQISGAGYRQLHGESSLFSSSRSRQRF 652
R RI IP ++G DE + +N G+ VF G Y + + S + ++
Sbjct: 508 RHSARIPIPGSYQLVGVADEGQAYINAGKENVFTLRQGQIY------ACIQDPSDAEPQW 561
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKG 695
+ QG V++++P +HPGDV+ + A+ P A + + VVF +G
Sbjct: 562 L-QGTCVISRSPVVHPGDVQRVYAIGKPPENQLCAFARLKNVVVFASRG 609
>gi|392595557|gb|EIW84880.1| RdRP-domain-containing protein [Coniophora puteana RWD-64-598 SS2]
Length = 1235
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 152/520 (29%), Positives = 231/520 (44%), Gaps = 98/520 (18%)
Query: 242 SRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFID 301
SRS IS G + + V +TP+R+ GP I SNRV+R + D+FLR+ F D
Sbjct: 389 SRSIDEVRRISSASGRFFCYHVTITPTRMLLEGPYITQSNRVIRKYEGFEDHFLRVEFRD 448
Query: 302 EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSA 361
ED L R D ++ + R+ L+NGI I R F FLA+SSS LR S
Sbjct: 449 EDR-------LQFRWDREVD-GQSFLEDRVGGMLKNGIDIAGRHFTFLAYSSSALRSHSV 500
Query: 362 WMFASRYGLTAAEIREWMGNFRE-IRNVAKYAARLG-----------------QSFSSSK 403
W ++A IR+ +G F E I +KYAAR+G Q+FS++
Sbjct: 501 WFVNEEDFMSATNIRDSLGVFAETIYQPSKYAARIGVSNGFLRFDLHMFNLPQQAFSATD 560
Query: 404 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC-------GLKDNPP 456
++ + D+ + I D+K G+ +F+DG+G +S E R V K G P
Sbjct: 561 PSVKISKDQWKEIRDIKNAQGQ---LFTDGVGTISRELGRMVWEKLCEARRDRGANSVIP 617
Query: 457 SAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY--ESELTKLDVL-AWSKYQPCFLNRQ 512
SA+QIR+ G+KGVVA D L R SMRK+ ++E +++++ A+ K LNR
Sbjct: 618 SAYQIRFLGFKGVVAIDEQLEGIMLCPRTSMRKFADQTEHAEIEIVRAFDKPNQPNLNRP 677
Query: 513 LISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN---------- 562
L+ +L G+ F + LD + A +++E +N
Sbjct: 678 LVMVLEDSGVDKGAF-------MELLDDAVAGARMAHDSVEKFVNVLRSNRLGFSYRLAH 730
Query: 563 ILKELLICGY----KPDAEPFLSMMLQTFRA----SKLLELRTKTRIFIPNGRSMMGCLD 614
IL +L G + E + L R L +++ RI IP ++G D
Sbjct: 731 ILLKLDALGLDLKSNSNQESLDTAFLARVRGCVINHVLRDIKHFARIPIPQSYQLVGVAD 790
Query: 615 E-----------TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
E TL G++F I Q GE + ++G V++++
Sbjct: 791 EGPAYVKDGHENVYTLPPGKIFACI------QNFGEEPKW----------LEGPCVISRS 834
Query: 664 PCLHPGDVRVLKAVNVPA------LHHMVDCVVFPQKGMR 697
P +HPGDV+ + AV P H+ + VV P +G R
Sbjct: 835 PVVHPGDVQRVYAVGKPPANQLCLFEHLRNVVVLPSQGPR 874
>gi|405974296|gb|EKC38952.1| Putative RNA-dependent RNA polymerase SHL2 [Crassostrea gigas]
Length = 520
Score = 153 bits (387), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 101/254 (39%), Positives = 139/254 (54%), Gaps = 22/254 (8%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V R +TPSR+ E NR+LR + + D F+R+ + DED +KI
Sbjct: 255 VRRAVLTPSRLILLSKEPVYFNRILRQY--NADYFIRLVYRDEDFEKISGMKYRGPQHLL 312
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM 379
D+ + I NG I DR +EFL S+SQLRE S W F+S G+TA IR+
Sbjct: 313 EDMKQHFI---------NGFTIYDRHYEFLGCSNSQLREHSFWFFSSYDGITAEFIRQSS 363
Query: 380 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE--IGKTKYVFSDGIGKV 437
G+ + R VA Y +R G FSSS TL++ E +V+ E + + Y F+DGIGK+
Sbjct: 364 GDLAKERCVASYVSRFGLCFSSSWNTLTIEEHE-----EVRFEKDVTRNGYCFTDGIGKI 418
Query: 438 SAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESELT 494
S A KVA L + PSAFQIRYGG KGV+A DP+ + + +R+SM+K+ES
Sbjct: 419 SKRLAAKVAKSMDL-NIVPSAFQIRYGGCKGVIAIDPSLGENREIIVIRESMKKFESNSK 477
Query: 495 KLDVLAWSKYQPCF 508
L+VL S+ CF
Sbjct: 478 SLEVLQVSRPVFCF 491
>gi|392569009|gb|EIW62183.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 793
Score = 152 bits (384), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 189/385 (49%), Gaps = 45/385 (11%)
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI---RNVAKY 391
+R G+ I ++ FL F+ SQ++ F +G T + G+ + KY
Sbjct: 65 VREGVEINGVRYRFLGFTESQVKAGKLMFFREGHGWTVERLLASFGDLSAVYLKSGYGKY 124
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 451
+ARLG SFSS+ E+L V + +PD+K G +++DG G + FA+K+ +K
Sbjct: 125 SARLGLSFSSTVESLDVPREAAHEMPDLKAPDGS---LYTDGCGMIRDSFAKKLCTKHNF 181
Query: 452 KDNPP--SAFQIRYGGYKGVVAADP-----------TSSKKLSLRDSMRKYESELTKLDV 498
PP S FQ+R GG KG++ P +SS ++ R SM KYE T L++
Sbjct: 182 ---PPDTSVFQVRRGGIKGLLVRYPDEKFERLGGTSSSSHLIAYRPSMYKYEDGPTMLEI 238
Query: 499 LAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALE-LMS 556
+ P LN Q LL +LG+ ++F++ ++ V + +I+TD KA ++ +
Sbjct: 239 NNHNLPPAPAHLNVQFTVLLLSLGVPVDVFKRLLQDQVDIIGSIVTDREKALHYIKGELD 298
Query: 557 PGENTNILKEL--LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 614
G + + L ++ +EP++ L ++ + LR K + I + + G +D
Sbjct: 299 AGVEDGLNQSLYAMLLAQHDLSEPYVRQRLLKYQEVQYESLRRKMNLRIMDSCYVFGVVD 358
Query: 615 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
E L G+V+V + +R +V+ VVVA+NP HPGD+R L
Sbjct: 359 EDSVLAPGEVYVNLP------------------ARSGILVRD-VVVARNPSYHPGDIRKL 399
Query: 675 KAVNVPALHHMVDCVVFPQKGMRYI 699
+AV+ P L H +C+VFP+KG R +
Sbjct: 400 RAVDRPQLRHHRNCIVFPRKGPRSV 424
>gi|395332591|gb|EJF64970.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1236
Score = 152 bits (383), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 156/541 (28%), Positives = 243/541 (44%), Gaps = 96/541 (17%)
Query: 223 ECCYEPSRWLTDQYRKYMTSRSKPS-SPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSN 281
E C+ + L D+ R S P SP G V +TP+RV GP SN
Sbjct: 388 EQCFRKA--LGDERRDVHASIVDPDDSPRTR---GSVQCAHAIITPTRVLLEGPYDTQSN 442
Query: 282 RVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILI 341
RV+R + D FLR+ F +E+ +S R + R+ I R L+ G+ I
Sbjct: 443 RVIRKYYAYRDYFLRVEFREENR-------MSFRWPIEVN-GRSLIQQRFGKFLKQGLEI 494
Query: 342 GDRKFEFLAFSSSQLRESSAWMFAS-----RYGLTAAEIREWMGNF---REIRNVAKYAA 393
R F FL +S+S LRE + W A +T +IR +G+F + IR +KYAA
Sbjct: 495 AGRTFRFLGYSTSGLREHTVWFMADFNHPEEGPVTPEKIRNDLGDFTFKKSIRQPSKYAA 554
Query: 394 RLGQSFSSSKETLSVHMDEIEI-IPDVKIEIGKTKYVFSDGIGKVSAEFARKV------- 445
R+ Q+FS + + + + + E +PD +G Y F+DG G +S E ++
Sbjct: 555 RIAQAFSGTDPSYKITIGQWEEGVPD----LGTDPYEFTDGQGTISVELRDRIWDVLCEA 610
Query: 446 ---ASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVL-- 499
K LK PSAFQIR+ G KG+V D KL LRDSM+K+ E + +
Sbjct: 611 SPDKRKLILK---PSAFQIRFLGCKGIVVVDEQLEGIKLRLRDSMKKFHVEHMREAEIEI 667
Query: 500 --AWSKYQPCFLNRQLISLLSTLGIWDE----IFEKKQREAVRQLDAILTDPLKAQEALE 553
A+ K P L R LI++L GI + + EK +++ V D I ++
Sbjct: 668 AKAFIKPGPARLCRPLIAVLEDRGIHKQHLLALQEKAKKKVVEARDTI-------EQTAG 720
Query: 554 LMSPGENTN------ILKELLICGY-----KPDA-----EPFLSMMLQTFRASKLLELRT 597
L+ + N IL+ L G KP A F++ ++ + L E++
Sbjct: 721 LLRDHDLGNVYGLRYILEHLRKAGVDTGKKKPRARHIMDNEFIARLIDYAQTHILSEIKH 780
Query: 598 KTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH----GESSLFSSSR---SRQ 650
RI I ++GC DE G ++ AG+ E +F+ + S +
Sbjct: 781 DARIPIEEAHQLVGCADE------GPAYI---AAGHDPEKVICLKEGEIFACVQQPDSDE 831
Query: 651 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA--------LHHMVDCVVFPQKGMRYILTM 702
+QGLV ++++P +HPGDV+ ++A+ P ++ + VV P G R + +M
Sbjct: 832 PIYIQGLVSISRSPHIHPGDVQRVRAIGKPPDDPDKVCFFRNLRNVVVMPSVGDRSLASM 891
Query: 703 L 703
L
Sbjct: 892 L 892
>gi|336388940|gb|EGO30084.1| RNA-directed RNA polymerase [Serpula lacrymans var. lacrymans S7.9]
Length = 1246
Score = 151 bits (382), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 116/377 (30%), Positives = 187/377 (49%), Gaps = 35/377 (9%)
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW-MGNFREIRNVA 389
I+ ++ G+ + ++ F S+SQLR S F + R + +G+F I N+A
Sbjct: 68 IVRLMKAGLFLNGLQYRFYHHSNSQLR-SRTCFFREANSDEELDARIYKLGDFGRIMNIA 126
Query: 390 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 449
K A R+G FS+++ L + + I D+ + VFSDG G ++ FA +V+
Sbjct: 127 KRAKRIGLLFSAAEVDLQLDPKWVTDIDDITV----GDIVFSDGCGLMAKRFAVQVSKAK 182
Query: 450 GL----KDNPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYES-ELTKLDVLA 500
+ + P+ FQIRY GYKGV+ DP ++ + R SM+K+ + E V+
Sbjct: 183 SIIFRNQRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSVVG 242
Query: 501 WSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 559
+S+ Y LN ++ LLS+LGI DE F+ KQR ++ D +KA ++ +S
Sbjct: 243 YSQPYSFGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKA---IDFLSSLG 299
Query: 560 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL-RTKTRIFIPNGRSMMGCLDETRT 618
++ + LL+ G A LQ ++ L+ R +TR+ I R + G D
Sbjct: 300 KYSLAERLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPYGV 359
Query: 619 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
L GQV ++I+ SSR + G ++V +NPCLHPGD L+AV+
Sbjct: 360 LKEGQVQIRIT---------------SSRGGATTPINGDILVVRNPCLHPGDCLKLRAVD 404
Query: 679 VPALHHMVDCVVFPQKG 695
P+L H++DC+VF G
Sbjct: 405 HPSLSHLLDCIVFATVG 421
>gi|312079416|ref|XP_003142164.1| RNA dependent RNA polymerase [Loa loa]
Length = 1486
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 142/496 (28%), Positives = 232/496 (46%), Gaps = 88/496 (17%)
Query: 234 DQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
D RK T S L V + +V TP R+ PE+ ++NRV+RHF +
Sbjct: 410 DALRKVSTDEEAESLS--DLPHNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA- 466
Query: 294 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
LR F D++ ++ + S RG + D + I I TL G+ I R ++FLA+S+
Sbjct: 467 -LRCVFRDDNGQRLVPKEFS-RGRALQDQSLI-IPDLIYRTLGTGLHIASRHYQFLAWSN 523
Query: 354 SQLRESSAWMFA---------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 404
SQ+R+ +M++ + +IR WMG+F ++V K +R+GQ F+ ++
Sbjct: 524 SQMRDGGCYMYSDAVVNDEVHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQP 583
Query: 405 TLSVHMDEIEIIPD-----VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAF 459
T+ + ++ ++ D V E G+ + FSDG+G++S ++A ++A L P S +
Sbjct: 584 TIMLEKNDWKVEDDIMGGIVHPETGEV-FNFSDGVGRISKKYADRIAEVLDLHPTP-SCY 641
Query: 460 QIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLST 519
Q + E +++V+ +S P L+R LI +L
Sbjct: 642 Q---------------------------EDEESAAEIEVVKYSMPAPVCLSRPLIMIL-- 672
Query: 520 LGIWDEIFEKKQRE---------------AVRQLDAILTDPLKAQEALELMSPGENTNIL 564
D++ EK+ R + +L A++ D A E EL S
Sbjct: 673 ----DQVSEKQSRHLHKKICSRIHSLLELELNKLSAMMFDENDAAE--ELSSRMSLPIDF 726
Query: 565 KELLICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNY 621
+L G EPF S+++ R + L L +K++IF+P G +M G +D+T L +
Sbjct: 727 HQLHSSGITFTNEPFFRSLLIAIHRYNIKLHL-SKSKIFLPASMGHTMYGVVDDTGLLQH 785
Query: 622 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
GQVF+Q S + R + G ++ I G V+V KNPC GDVR+ +AV A
Sbjct: 786 GQVFIQYSPS-IRYVSG-----------KKIIYTGPVMVTKNPCHVAGDVRMFEAVYQDA 833
Query: 682 LHHMVDCVVFPQKGMR 697
L H+ D +VFP+ G R
Sbjct: 834 LSHLCDVIVFPRYGPR 849
>gi|336364173|gb|EGN92535.1| hypothetical protein SERLA73DRAFT_99065 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1660
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 115/377 (30%), Positives = 188/377 (49%), Gaps = 35/377 (9%)
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW-MGNFREIRNVA 389
I+ ++ G+ + ++ F S+SQLR + + F + R + +G+F I N+A
Sbjct: 93 IVRLMKAGLFLNGLQYRFYHHSNSQLRSRTCF-FREANSDEELDARIYKLGDFGRIMNIA 151
Query: 390 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 449
K A R+G FS+++ L + + I D+ + VFSDG G ++ FA +V+
Sbjct: 152 KRAKRIGLLFSAAEVDLQLDPKWVTDIDDITV----GDIVFSDGCGLMAKRFAVQVSKAK 207
Query: 450 GL----KDNPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYES-ELTKLDVLA 500
+ + P+ FQIRY GYKGV+ DP ++ + R SM+K+ + E V+
Sbjct: 208 SIIFRNQRYTPTVFQIRYLGYKGVLMLDPKLDEEKKFLVKFRKSMKKFSTTEDKSFSVVG 267
Query: 501 WSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGE 559
+S+ Y LN ++ LLS+LGI DE F+ KQR ++ D +KA ++ +S
Sbjct: 268 YSQPYSFGRLNNDIVVLLSSLGISDEKFQAKQRAYFEWIEGASHDAVKA---IDFLSSLG 324
Query: 560 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL-RTKTRIFIPNGRSMMGCLDETRT 618
++ + LL+ G A LQ ++ L+ R +TR+ I R + G D
Sbjct: 325 KYSLAERLLLDGMDSPAVSKEIRALQNAEVAQFLKNNRPRTRMIIHKSRLLYGVCDPYGV 384
Query: 619 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
L GQV ++I+ SSR + G ++V +NPCLHPGD L+AV+
Sbjct: 385 LKEGQVQIRIT---------------SSRGGATTPINGDILVVRNPCLHPGDCLKLRAVD 429
Query: 679 VPALHHMVDCVVFPQKG 695
P+L H++DC+VF G
Sbjct: 430 HPSLSHLLDCIVFATVG 446
>gi|393912446|gb|EFO21905.2| RNA dependent RNA polymerase [Loa loa]
Length = 1514
Score = 151 bits (381), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 142/496 (28%), Positives = 232/496 (46%), Gaps = 88/496 (17%)
Query: 234 DQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDN 293
D RK T S L V + +V TP R+ PE+ ++NRV+RHF +
Sbjct: 438 DALRKVSTDEEAESLS--DLPHNCVLIRKVMATPLRLLLLPPEVMMTNRVIRHFGEEYA- 494
Query: 294 FLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSS 353
LR F D++ ++ + S RG + D + I I TL G+ I R ++FLA+S+
Sbjct: 495 -LRCVFRDDNGQRLVPKEFS-RGRALQDQSLI-IPDLIYRTLGTGLHIASRHYQFLAWSN 551
Query: 354 SQLRESSAWMFA---------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 404
SQ+R+ +M++ + +IR WMG+F ++V K +R+GQ F+ ++
Sbjct: 552 SQMRDGGCYMYSDAVVNDEVHGQMICNVEDIRRWMGDFTASKSVPKMMSRMGQCFTQAQP 611
Query: 405 TLSVHMDEIEIIPD-----VKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAF 459
T+ + ++ ++ D V E G+ + FSDG+G++S ++A ++A L P S +
Sbjct: 612 TIMLEKNDWKVEDDIMGGIVHPETGEV-FNFSDGVGRISKKYADRIAEVLDLHPTP-SCY 669
Query: 460 QIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLST 519
Q + E +++V+ +S P L+R LI +L
Sbjct: 670 Q---------------------------EDEESAAEIEVVKYSMPAPVCLSRPLIMIL-- 700
Query: 520 LGIWDEIFEKKQRE---------------AVRQLDAILTDPLKAQEALELMSPGENTNIL 564
D++ EK+ R + +L A++ D A E EL S
Sbjct: 701 ----DQVSEKQSRHLHKKICSRIHSLLELELNKLSAMMFDENDAAE--ELSSRMSLPIDF 754
Query: 565 KELLICGYKPDAEPFL-SMMLQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNY 621
+L G EPF S+++ R + L L +K++IF+P G +M G +D+T L +
Sbjct: 755 HQLHSSGITFTNEPFFRSLLIAIHRYNIKLHL-SKSKIFLPASMGHTMYGVVDDTGLLQH 813
Query: 622 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
GQVF+Q S + R + G ++ I G V+V KNPC GDVR+ +AV A
Sbjct: 814 GQVFIQYSPS-IRYVSG-----------KKIIYTGPVMVTKNPCHVAGDVRMFEAVYQDA 861
Query: 682 LHHMVDCVVFPQKGMR 697
L H+ D +VFP+ G R
Sbjct: 862 LSHLCDVIVFPRYGPR 877
>gi|389748402|gb|EIM89579.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1346
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 139/482 (28%), Positives = 224/482 (46%), Gaps = 76/482 (15%)
Query: 251 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDID-----NFLRISFIDEDLD 305
+ L G Y H + TP+R GP SNRV+R ++ +ID NF+R+ F DED
Sbjct: 414 LKLSKGHFYCHHITFTPTRTILEGPNPTQSNRVIRKYQ-EIDPTFTENFIRVDFRDEDR- 471
Query: 306 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA 365
LS R D T + R+ L+NG + R FEFLA+S+S LRE + W F
Sbjct: 472 ------LSYRWDRDVDGTYF-LQQRVGHILKNGFELAGRDFEFLAYSTSALREHAVW-FV 523
Query: 366 SRYGLTAAE------------IREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDE 412
+ L ++ IR+ +G+F IR +KYAAR+ Q+F+++ ++ V D+
Sbjct: 524 HPFHLPSSHPSHSGTYVNGHYIRQSLGDFSNVIRQPSKYAARIAQAFTATDPSVKVTRDQ 583
Query: 413 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV-ASKC------GLKDNPPSAFQIRYGG 465
E + D+ + +Y+ +DG+G +S E + A C G PSA+QIR+ G
Sbjct: 584 WEEMEDIGDD---DRYLHTDGVGTISLELGGMIWAELCESRLDHGGNTVRPSAYQIRFLG 640
Query: 466 YKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF-------LNRQLISLL 517
YKG+V D K+ LR SMRK+ + D AW + F LNR L+ +L
Sbjct: 641 YKGMVVIDHRLVGIKMRLRPSMRKF---VVDNDEDAWLEIARAFERPNSFSLNRALVMIL 697
Query: 518 STLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL---ELMSPGENTNILKELLIC---- 570
G+ E F Q E + L +D ++ +L M G + + E L+
Sbjct: 698 EDRGVRKESFISLQ-EQTKSLIYTSSDSIEKFVSLLRTHGMGFGYHLPFILEQLVKLGLD 756
Query: 571 -------GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET-----RT 618
G K FL +L+ L +++ K +I +P ++GC DE
Sbjct: 757 FKETNRDGSKAIENAFLGRVLRFAMNGCLRDIKHKAQIPVPGSYKLVGCADEGLAYIREG 816
Query: 619 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
L+ V+ +G + + + S +F+ +G +++++P +HPGD++ + AV
Sbjct: 817 LDKDSVYTLPAGCIF------ACVQEGPGSETKFL-KGPCMISRSPVVHPGDIQRVWAVG 869
Query: 679 VP 680
P
Sbjct: 870 EP 871
>gi|341877528|gb|EGT33463.1| hypothetical protein CAEBREN_18731 [Caenorhabditis brenneri]
Length = 1708
Score = 149 bits (376), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 133/516 (25%), Positives = 222/516 (43%), Gaps = 97/516 (18%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
+G + +T +R + PE+ +SNR + D +R + D++ K+ L
Sbjct: 443 EGFRKTRKALLTTTRKIYLAPEMIMSNRAVTGVDHDGTRIIRTTIRDDNFQKMRQYQLGD 502
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA--------- 365
S +++ L+ G +I R F +LA S+SQ+RE +
Sbjct: 503 LLSE-----------KVMRRLKKGFVIMGRSFSYLASSNSQMREGGTYHMERFNKKQLDL 551
Query: 366 -----------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHM--DE 412
S Y R+ +G F + +++K ARLGQ F+ ++ + + + +
Sbjct: 552 DYPGIHLRKIPSGYKPKILAYRKKLGKFEKTGSISKAMARLGQCFTQARACIGIEIGNQD 611
Query: 413 IEIIPDV--KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN-PPSAFQIRYGGYKGV 469
+++PD Y+++DG+G +SA A+K+A L + PSA+QIR+ G KG+
Sbjct: 612 YQMVPDAIGGKNANGAPYMYTDGVGMISARLAQKIAKSMKLPNGFVPSAYQIRFRGLKGM 671
Query: 470 VAADP---------------------TSSKKLSL---------RDSMRKYES-----ELT 494
+ DP T+S+++ L R+S K+ S +
Sbjct: 672 LVVDPSLDNKADYFKDIYRRGLMRKETNSEEIDLAPYTFKCLFRESQMKFHSSKGGKDKW 731
Query: 495 KLDVLAWSKYQPCFLNRQLISLLSTLG----------IWDEIFEKKQREAVRQLDAILTD 544
++++ WS P LNR I++L + I I E E D I+ +
Sbjct: 732 PIELVKWSSPTPVTLNRPFINILDQVSALQSLDCHKRICGRIEELLDIEMDSFTDCIINE 791
Query: 545 PLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
K + LE M + G+ EPF +++ ++ L K I IP
Sbjct: 792 D-KCRSKLEGMP--RRVHFPSLWRRNGFSLCTEPFFRALIKAAIDFSMMRLLKKVNIPIP 848
Query: 605 N--GRSMMGCLDETRTLNYGQVFVQIS-GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
+ GRSM G DET L YGQVFVQ + + G S I++G ++V
Sbjct: 849 SNVGRSMFGVTDETGLLQYGQVFVQYTENVNNKHPSGVSGK----------ILKGPLMVT 898
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
K P + GDVR+ +AV++P L H+ + +VFPQ G R
Sbjct: 899 KFPSMCEGDVRMYEAVDIPELRHLENVIVFPQNGPR 934
>gi|389751599|gb|EIM92672.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1228
Score = 149 bits (375), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 137/490 (27%), Positives = 230/490 (46%), Gaps = 66/490 (13%)
Query: 246 PSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD 305
P SP ++ D G+ + VTP+ + GP SNRV+R + +D D FLR+SF+DE+
Sbjct: 408 PPSPFLN-DPGVFESFHIAVTPTIMALEGPLPERSNRVMRMYPKDHDCFLRVSFMDEN-- 464
Query: 306 KIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF- 364
L R + D I + I L G+++ RKF FL +S S L+ + W
Sbjct: 465 -----RLQYRSNRDID-GPLFINSWITRILHEGMVVAGRKFRFLGYSQSALKSHTVWFVL 518
Query: 365 --ASRYGLTAAEIREWMGNFREIRN-------VAKYAARLGQSFSSSKETLSVHMDEIEI 415
R L I +G F ++ A+Y AR+ Q+F+++ ++ V +E+ +
Sbjct: 519 DDPERPELRVENIIRGLGQFDNLKYDRQLIYCPARYGARISQAFTATDPSIVVRAEEVFL 578
Query: 416 IPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN----------PPSAFQIRYGG 465
+ D+K + ++ F++G+G +S A+ ++ LKD+ P AFQ+R+ G
Sbjct: 579 LEDIK----RGQWCFTEGVGTLSRAMAKAISKT--LKDSGKRAFRRLTTHPGAFQVRFQG 632
Query: 466 YKGVVAADPT-SSKKLSLRDSMRKYESELTKLDV---LAWSKYQPCFLNRQLISLLSTLG 521
KGVV DP + +R SM K+E+ LDV A+ + +LNR LI +L LG
Sbjct: 633 SKGVVTVDPRLRGNAICVRPSMIKFEAP-ESLDVEIAQAFDRPSKYYLNRPLIMILEALG 691
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL-ICGYKPDAEPFL 580
+ +F++ Q A+ Q+ E +E G + + L + +A P
Sbjct: 692 VPYRVFDRLQTRAITQVHKASRSLRGLAEIMEAYGLGTSYRLPSIFLSLSKLHVEAPPDD 751
Query: 581 SMM--LQTFRASKLL-ELRTKTRIFIP-NGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 636
S + F +L +L+ RI + +G +++G D L +V+ I R
Sbjct: 752 SFFHRVNDFTVHHILRDLKHHARIPLDRHGWTLVGVADIHGWLREKEVYAYI-----RLP 806
Query: 637 HGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA-----LHHMVDCVVF 691
GE+ F ++G V+V+++P +HPGDV+VL AV P + + +VF
Sbjct: 807 DGEA-----------FYLEGRVMVSRSPTIHPGDVQVLTAVKPPHGSIYLREPLANTLVF 855
Query: 692 PQKGMRYILT 701
+G R + T
Sbjct: 856 SIQGTRPVYT 865
>gi|70608336|gb|AAZ04410.1| putative RNA-dependent RNA polymerase SDE1/SGS2/RDR6 [Nicotiana
benthamiana]
Length = 172
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 70/142 (49%), Positives = 93/142 (65%)
Query: 556 SPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 615
S E N +L G+KP +EP L ML + RAS+L +LR K RIF+P+GR +MGCLDE
Sbjct: 10 SCAEAGNTAAIMLSAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDE 69
Query: 616 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 675
L GQ F+Q+S + S + +++GLV++AKNPCLHPGDVR+L+
Sbjct: 70 LGELEQGQCFIQVSSPSLESCFVKHGPNFSDIKKNLQVIKGLVIIAKNPCLHPGDVRILE 129
Query: 676 AVNVPALHHMVDCVVFPQKGMR 697
AV+VP LHH+ DC+VFPQKG R
Sbjct: 130 AVDVPGLHHLYDCLVFPQKGDR 151
>gi|395334238|gb|EJF66614.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 1233
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 139/474 (29%), Positives = 218/474 (45%), Gaps = 63/474 (13%)
Query: 262 RVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATD 321
R+ VTP+ + GP SNRV+R + D FLR+SF DE+ L R + D
Sbjct: 434 RLTVTPTTMILEGPFPERSNRVMRKYYHSQDCFLRVSFQDEN-------RLQYRFNREVD 486
Query: 322 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-RYG--------LTA 372
R I R+ L GI I F FLA+S S L+E + W RY + A
Sbjct: 487 -GRRFIDLRVKRVLLEGIRIAGAHFRFLAYSQSALKEHAVWFVKPFRYRDSHQNVHFVDA 545
Query: 373 AEIREWMGNFREI-------RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 425
I + +G F + R A+YAAR+ Q+F+++ +S+ + + + D+K GK
Sbjct: 546 TTIIQSLGQFHNLPFDPTLMRCPARYAARISQAFTATDAAVSMAVGVVYMGRDIKGRNGK 605
Query: 426 TKYVFSDGIGKVSAEFARKV-------ASKCGLKDNPPSAFQIRYGGYKGVVAAD-PTSS 477
VF+DG+G +S A + + K P AFQ+R+ G KG+++ D +
Sbjct: 606 D--VFTDGVGTLSPMLAESIWKALQSRSGKTRKGKTYPRAFQVRFQGSKGMLSVDYKLTD 663
Query: 478 KKLSLRDSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWDEIFEKKQREAV 535
+ LR SM K++ + + +A + +P +LNR LI LL LG+ F+K Q +AV
Sbjct: 664 NAIMLRPSMIKFDDSKSAIVEVARAFDRPGAYYLNRPLIMLLEGLGVPYTTFKKLQDDAV 723
Query: 536 RQLDAILTDPLKAQEALELMSPGENTNILKELL---ICGYKP-DAEPFLSMMLQTFRASK 591
R +T + + E G + I +L G P D + F M+
Sbjct: 724 RDAQTSVTSLKLSAKLFEDHGLGVSFRIAPVMLGLHKLGLGPLDDDIFWRQMMDFAVNHV 783
Query: 592 LLELRTKTRIFIPNGRS--MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR 649
L EL+ + RI +P S ++G D R L G++FV + S + +
Sbjct: 784 LRELKHRARIPVPGTDSWTLVGVADIHRELKEGEIFVCV---------------DSPKEK 828
Query: 650 QRFIVQGLVVVAKNPCLHPGDVRVLKAVN--VPALHHMVD----CVVFPQKGMR 697
++G VV+++P +HPGDV++ A+ P H+ V+ VVF G R
Sbjct: 829 GLIFLEGPCVVSRSPTIHPGDVQIATAIGRPRPGSHYDVESLRNTVVFSTTGSR 882
>gi|403417878|emb|CCM04578.1| predicted protein [Fibroporia radiculosa]
Length = 1258
Score = 147 bits (372), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 144/511 (28%), Positives = 227/511 (44%), Gaps = 81/511 (15%)
Query: 254 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 313
D + H V TP+R+ GP SN V+R + + D F+R+ F+DE+ D
Sbjct: 440 DKNIFTCHHVTFTPTRMILEGPSRLQSNSVVREYWENRDRFIRVDFVDENRSHFR-LDQE 498
Query: 314 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS------- 366
G+S + R+ + L+ G I R FE L +S+S L + W
Sbjct: 499 VDGASF-------LQDRVGTILKGGFQIASRVFELLGYSNSSLGDHVFWFVNPFERVSRN 551
Query: 367 ------RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK 420
R +TA EIR +G+ EI AKYAAR+GQ+F+S+ ++ V DE E I ++
Sbjct: 552 ANGQEVREFITAEEIRRRLGDLSEIALPAKYAARIGQAFTSTYFSVQVVEDEWEEIEEIL 611
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKV-ASKC---------GLKDNPPSAFQIRYGGYKGVV 470
+ K DG+G++S + A + C G+K PSAFQIR+ GYKGVV
Sbjct: 612 EDRDNPK-SHVDGLGRISQDLANAIWEGMCEEEPERRAYGVK---PSAFQIRFIGYKGVV 667
Query: 471 AAD-PTSSKKLSLRDSMRKYE-----------------SELTKLDVL-AWSKYQPCFLNR 511
A D +KL LR MRK++ + + L + A+ + +L R
Sbjct: 668 AVDRQLKGRKLCLRPEMRKFKPHRCDGCRAKLFCAHLNNPIQSLHIAEAFHGPRRAYLTR 727
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN-------TNIL 564
+++L + DE+FE Q EA R K E L+ G +L
Sbjct: 728 DPVTILEDREVRDEVFENLQDEAKRTTYMARDSSEKYLELLQSHHLGFQYRLPFLLQRLL 787
Query: 565 KELLICGYKPDAE-----PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 619
L CG + AE PF + + L +L+T+ RI +PN ++G DE
Sbjct: 788 DIGLDCGSQILAENVLNDPFFLGLREYGIQHVLRDLKTRARIPVPNSYLLVGVADE---- 843
Query: 620 NYGQVFVQISGAGYRQLHGES-SLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
G + + + Y+ +G+ + S + ++GL + ++P +HPGDV+ + A+
Sbjct: 844 --GPAYTKQGHSVYQLKNGQIFACVQESPDAKPIWLKGLCFITRSPTVHPGDVQRVTAIG 901
Query: 679 VPAL--------HHMVDCVVFPQKGMRYILT 701
P + HM + VV P G R + +
Sbjct: 902 KPDVPDGQICLFEHMKNVVVLPTVGCRSLAS 932
>gi|66813222|ref|XP_640790.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
gi|60468778|gb|EAL66778.1| RNA-directed RNA polymerase [Dictyostelium discoideum AX4]
Length = 2285
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 130/466 (27%), Positives = 213/466 (45%), Gaps = 67/466 (14%)
Query: 251 ISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHST 310
I ++G V ++ + VTPSR+ P + + NR+LR F + F+ +F DE+L+
Sbjct: 1065 IQSNNGWVLINEIFVTPSRIVLKPPRLTLGNRILRKFSPE--KFILFNFTDENLEPF--- 1119
Query: 311 DLSPRG-SSATDITRTRIYTRILSTLRNGILI---GDRKFEFLAFSSSQLRESSAWMFAS 366
RG + ++ +T+T I NGI I +K+ F+ S SQ+R SAW
Sbjct: 1120 ----RGLNKSSPLTKT-----IERIFNNGIEIIQGSGKKYFFIGCSQSQVRNYSAWFVLE 1170
Query: 367 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT 426
W G E + K L FS++ ++ ++ +IE+IPD+ I K
Sbjct: 1171 DKVTNEKSALNWSGIKYESLQMIKVFRNLCLLFSTTLKSQVIY--KIEMIPDI---ISKE 1225
Query: 427 KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-VAADPTSSKKLSLRDS 485
+ F++G G + ++ + + ++ A+QIR GG KGV V + L +R S
Sbjct: 1226 GHNFTEGCGFIGSKLVELINQQNNY-NSSTCAYQIRLGGSKGVLVLNENIDEMSLQIRPS 1284
Query: 486 MRKYE---------SELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR 536
M K+E E L++++ S C LNRQ I+LLS G+ D F + +
Sbjct: 1285 MSKFELDYKSGQLDEEHKTLEIVSASTTSRCKLNRQAITLLSNAGVEDSTFLQMLEVELN 1344
Query: 537 QLDAILTDPLKAQEALELMSPGENTNILKELL------ICGYKPDAEPFLSMMLQTFRAS 590
Q L D N+ KELL I Y+ + ++ +L S
Sbjct: 1345 QNAQTLVD----------------VNLSKELLGDFFQHITEYELFNDYYIRSILLKLYKS 1388
Query: 591 KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 650
KL++++ K I + R+++G D + TL V++++ +L +L
Sbjct: 1389 KLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEV-----EELDPIDNLMKPK---- 1439
Query: 651 RFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 696
++ G V V KNPC HPGDVR LKA++ P L+ + + F GM
Sbjct: 1440 --VIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGM 1483
>gi|290993029|ref|XP_002679136.1| predicted protein [Naegleria gruberi]
gi|284092751|gb|EFC46392.1| predicted protein [Naegleria gruberi]
Length = 464
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/334 (32%), Positives = 170/334 (50%), Gaps = 27/334 (8%)
Query: 379 MGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
+GNF I+ A+YAAR+GQ FS + E +S E EIIPD I + YVF+DG+G++S
Sbjct: 1 LGNFSHIKVKARYAARIGQCFSHTYEGIS---KEYEIIPD----ITRNNYVFTDGVGRIS 53
Query: 439 AEFARKVASKCGL----KDNPPSAFQIRYGGYKGVVAADP----TSSKKLSLRDSMRKY- 489
EFA ++ K + K+ PSAFQ R GG KGVV DP S L L S K+
Sbjct: 54 LEFAVELTKKFQISFAGKEYIPSAFQFRMGGLKGVVVVDPDIHLYSDLDLLLSKSQEKFI 113
Query: 490 ESELTKLDVLAWSKYQP-CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 548
+S ++ +++ +SK LNRQLI+LLS+ + D +F + + ++ + D
Sbjct: 114 DSSSSEFELITYSKRNRFASLNRQLIALLSSNKVSDSVFLQLLDRDLEEIKKLFNDKKYM 173
Query: 549 QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLL-ELRTKTRIFIPNGR 607
+ L +K++ Y D++ S ++Q+ K ++ RI +
Sbjct: 174 RRVLRKSQDNIVGKNMKKVASLNY-LDSQYDFSKVVQSGEDIKFFYQIEPNGRIILDKAL 232
Query: 608 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 667
+MG +D L +VF+Q+S + +S L+ + + G V + ++PCLH
Sbjct: 233 LLMGVVDFYGVLEEDEVFIQLS----ELENSDSDLYDDNCFVNGGTLSGTVAITRSPCLH 288
Query: 668 PGDVRVLKAVNVP----ALHHMVDCVVFPQKGMR 697
PGD+R KAV P L H+ D +VF QKG R
Sbjct: 289 PGDIRKFKAVTDPEKISKLSHLRDVIVFSQKGNR 322
>gi|353237176|emb|CCA69155.1| related to RNA-directed RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1262
Score = 145 bits (365), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 144/494 (29%), Positives = 227/494 (45%), Gaps = 73/494 (14%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
L G + V +TP+ + GP SN V+R + ++FLR++F DE+ +I
Sbjct: 461 LPPGWYWACSVTITPTTMRLEGPHHGQSNGVIRRYVEHSEHFLRVNFTDEERLQIRWD-- 518
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYG 369
R T R R+ + L+NG IG R F+FLA+S+S LRE S W F RY
Sbjct: 519 --RDVDGTSFVRERVG----NFLKNGFDIGGRHFDFLAYSNSGLREHSMWFVAPFRDRYN 572
Query: 370 --LTAAEIREWM-----------GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEII 416
+ A IR + F+ + AK+ ARL Q+FS+++ + + DE+EI
Sbjct: 573 NQVNAEIIRNLIMDIELQKGGDTAEFKLEKQPAKFGARLAQAFSTTEPAIELKEDEVEIK 632
Query: 417 PDVKIEIG-------KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV 469
D+ ++ KT F+DG G +S ++ NP +R GG KGV
Sbjct: 633 EDIMVDPKFTKPDGPKTATEFTDGYGCMSLAVRDEIWRAL----NP----GVRLGGAKGV 684
Query: 470 VAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQP--CFLNRQLISLLSTLGIWDEI 526
+ +PT +K+ L SM K++S+ L + A+ P FLNR LI++L LG+ +
Sbjct: 685 LGINPTLEGRKVVLHRSMVKFKSKDYGLHI-AFKFDHPLKLFLNRPLIAILEHLGVQIDW 743
Query: 527 FEKKQREAVRQLDAIL--TDPLKAQ--EALELMSPGENTNILK-----ELLICGYKPDAE 577
F++ A ++++ L D A+ E+ L P + IL+ E+ +
Sbjct: 744 FKRLLVNAQSKMNSTLLSIDEGAAEFFESRRLGLPFDLPRILRSLEKYEVTRVKLQEYDH 803
Query: 578 PFLSMMLQTFRASKL---LELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR 634
PF L+ +K EL+ K RI +P G S++G D L +V++ +
Sbjct: 804 PFNDFWLRCLDVAKAHIDRELKYKARIPVPFGCSLVGVPDVHMELEADEVYI-----CKQ 858
Query: 635 QLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA-----LHHMVDCV 689
+ E F G V + ++P +HPGDV+ KA + P H +V+ V
Sbjct: 859 ERDREPKWFPEK--------PGYVYITRSPSIHPGDVQKFKAKHPPRGSVYYNHPVVNAV 910
Query: 690 VFPQKGMRYILTML 703
VF KG R +ML
Sbjct: 911 VFSCKGARPPASML 924
>gi|260793153|ref|XP_002591577.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
gi|229276785|gb|EEN47588.1| hypothetical protein BRAFLDRAFT_105111 [Branchiostoma floridae]
Length = 3516
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 125/398 (31%), Positives = 186/398 (46%), Gaps = 54/398 (13%)
Query: 331 ILSTLRNG--ILIGD---RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI 385
+ + LR+G + +G R + F S+SQLRE + ++ + G F I
Sbjct: 108 VSAVLRSGFKVTVGKGQRRHYVFFGHSASQLRERTCILYDQGVLGPWERLVNGFGEFEAI 167
Query: 386 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 445
+N +K AAR+G S++ + L +DE EI D +I + + F+DG G +S ARK+
Sbjct: 168 KNPSKRAARIGLLLSTATKCL--ELDEKEI--DHTSDIERDGFTFTDGCGFISVACARKI 223
Query: 446 ASKCGL------KDNP-PSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDV 498
+ +D P PS Q R G KGVV DP+ + +R S K++ +L V
Sbjct: 224 MQDKDISERYRHQDPPVPSVIQFRMKGCKGVVMTDPSLPNGVCIRPSQEKFKWKLPPPHV 283
Query: 499 LAWSK------YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
Y LN+Q I +LS LGI DE+F KQ ++LD + TD + A
Sbjct: 284 FGVCDDGISQPYAFGQLNKQYIMMLSALGIKDEVFLSKQETYFKELDCLETD---KEVAF 340
Query: 553 ELMSPGENTNILKELLICGYKPDAEP------FLSMMLQTFRASKLLEL-RTKT------ 599
+ + + L PD E F S + + +A+KL +L TK
Sbjct: 341 RHLCARGYIGLAERLFSREGGPDNETLEILRGFRSRVRRPPKANKLHKLLNTKPEPARAL 400
Query: 600 RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
+I I R++ G D + TL GQ F Q + + G+ +F+ ++ V
Sbjct: 401 KIPIEKSRNVFGVCDPSGTLEPGQCFFQAT------VRGKMQVFADTK----------VA 444
Query: 660 VAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
V K PC HPGD RVL+ VNV H+VDCVVFP +G R
Sbjct: 445 VVKCPCYHPGDFRVLQCVNVEDCRHLVDCVVFPVQGER 482
>gi|390597813|gb|EIN07212.1| RdRP-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1217
Score = 143 bits (361), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 136/524 (25%), Positives = 234/524 (44%), Gaps = 95/524 (18%)
Query: 245 KPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDL 304
KP + A + G+ + + PSR+ GP NRV+R + ++F+R+ F +ED
Sbjct: 392 KPRT-ATTCPSGMFSCYHITFCPSRMILEGPFPTQGNRVIREYSGYEEHFVRVDFREED- 449
Query: 305 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM- 363
L R D R+ + R+ L+ G + R F+FLA+SSS L++ + W
Sbjct: 450 ------GLQYRWDREVD-CRSFLAERVGRILKEGFELAGRHFQFLAYSSSALKQHAVWFV 502
Query: 364 ----FASRYGLTAAEIREWMGNF-------REIRNV---------AKYAARLGQSFSSSK 403
+ + A IR+ +G+F E R+ +KYAAR+ Q+F+++
Sbjct: 503 HPFEHHEKGSVDAYIIRDRLGDFSGAIDNNNETRDAKTIQLRMQPSKYAARMAQAFTATD 562
Query: 404 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV-ASKCGLKDNP------- 455
++ ++ D+ + IPD +GK ++ +DG G +S + A + A+ C KD P
Sbjct: 563 PSVRINEDQWQEIPD----LGKEPHLHTDGCGTISRKLADMIWAALC--KDRPYFQACKS 616
Query: 456 -PSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSK--YQP--CFL 509
P +QIR+ GYKG+V D T +++ LR SM K+ + T + +K ++P L
Sbjct: 617 SPDCYQIRFLGYKGIVTVDETLEGEQMCLRPSMNKFRAHKTPSAEIEIAKPFWKPTQVNL 676
Query: 510 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTN-----IL 564
NR LI +L G+ + F K Q EAVR ++ L G +N I+
Sbjct: 677 NRALIMILEDRGVSWKCFMKLQDEAVRDINTASFSIDNFVRMLSDRGAGLGSNYRLLYIM 736
Query: 565 KELLICGY--------KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 616
+ L G+ +P + PF+ +++ R L E++ I + + + G DE
Sbjct: 737 RNLAELGFDFKQRLRVQPLSHPFILRLVEFIRHHLLREIKHGASIPLRDAYLLPGVADE- 795
Query: 617 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-----------VVVAKNPC 665
G Y + G ++F + +R VQG V+ ++P
Sbjct: 796 -------------GPAY-EARGHQNVFKLAENRIFACVQGPDDVEPKWLKGNCVIWRSPV 841
Query: 666 LHPGDVRVLKAVNVPALHHMV------DCVVFPQKGMRYILTML 703
+HPGD++ + A+ P + + VV P G R + + L
Sbjct: 842 VHPGDIQRVYAIGKPPEDQLCFFSRLKNVVVLPSVGERSLASCL 885
>gi|403377070|gb|EJY88529.1| Suppressor of ascus dominance [Oxytricha trifallax]
Length = 1160
Score = 142 bits (359), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 135/533 (25%), Positives = 238/533 (44%), Gaps = 85/533 (15%)
Query: 254 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 313
DDG + + + +TP+ + +SN +LR + D FL++ F +DL+ S
Sbjct: 313 DDGKIEAYSLTITPTFNIYNLNSQQLSNVILRQNQNYHDKFLKVDFKGDDLEDAGQILQS 372
Query: 314 PRGSSATDITRTR--IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRY--- 368
G + + + + + GI I ++FL S+S L++ + WM +
Sbjct: 373 KYGFKQGKPIKHKNSLSNYVWKPISEGINILHMNYQFLGNSNSSLKQHTIWMLNTSQFED 432
Query: 369 ----------GLT-AAEIREWMGNFREI---------RNVAKYA-ARLGQSFSSSKETLS 407
G+ +I+E G+ ++ + + + AR Q FS ++
Sbjct: 433 KCDNVVRLYNGMELLQQIQESFGHLPKVVKSENKELNKGITLHTLARAAQLFSGTRHICE 492
Query: 408 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 467
+ D+IE IPD+ I+ GK FSDG G +S E A K+ + L+D SA+Q R GG K
Sbjct: 493 LRADQIEYIPDI-IKNGKN---FSDGNGCISQELANKINAIYNLQD--CSAYQFRLGGCK 546
Query: 468 G-VVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEI 526
G +V +K+ +R SM+K+E+ T L++ + F NRQLISL+ GI E
Sbjct: 547 GTLVVNQELQGEKIQIRKSMKKFENSDTSLNIARCATPSQGFFNRQLISLIENQGIIFED 606
Query: 527 FEK-----KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS 581
E+ Q + + Q+++ + +K ++ + + +N L++ + + ++S
Sbjct: 607 IEQILESSDQLKFINQINS-FENTIKDEDLIFSQQQAKISN----LMLTNTQKEFINYIS 661
Query: 582 ----MMLQTF--------------RASKLL------ELRTKTRIFIPNGRSMMGCLDETR 617
M +TF SKLL +++ K RI I + ++G D +
Sbjct: 662 ESGQQMFKTFVEKRMDVQSDPFIKNLSKLLSHQITSQIKNKGRIPIKDSAILIGVADYLQ 721
Query: 618 TLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 677
L G++F+Q+ ++ ES ++ G V++ ++PCLHP DV +KAV
Sbjct: 722 VLQPGEIFLQVQDPD---INEESKDIYE-------VITGDVIITRSPCLHPNDVMKVKAV 771
Query: 678 NVPALHHMVDCVVFPQKGMRYILTMLKP--------RLLWYELNSSHALPRFI 722
N H+ + VVF G I + L ++W E S P+F+
Sbjct: 772 NCNQYKHLNNVVVFSANGDEPIQSQLAGGDLDGDVFHIIWNERLVSQFTPQFL 824
>gi|302690464|ref|XP_003034911.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
gi|300108607|gb|EFJ00009.1| hypothetical protein SCHCODRAFT_255915 [Schizophyllum commune H4-8]
Length = 1237
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 152/622 (24%), Positives = 267/622 (42%), Gaps = 126/622 (20%)
Query: 165 DGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKEC 224
D P+ + F++ L++NG + ++S S++ I AL + Y +C
Sbjct: 337 DFAKFPWPVAFQLEALLRNGRITTGEIES-------------SLNAI-RALCETYPEHDC 382
Query: 225 CYEPSRWLTDQYRKY---MTSRSKPSSPAISLD--------------DGLVYVHRVQVTP 267
+ D RK+ + R SP D G + TP
Sbjct: 383 AR-----VGDLLRKFNFELGKRPATESPRACFDRIMKLFEFAELHITPGYFQCCHIIFTP 437
Query: 268 SRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 327
+R GP SNR++R + +F+R+ F DED L+ R D ++ +
Sbjct: 438 TRTVLEGPYPVQSNRIIRRYPGYEHHFIRVEFRDEDR-------LAYRWDRTVDGSQF-V 489
Query: 328 YTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS------RYGLTAAEIREWMGN 381
R+ L NG +G R F FLA+S+S LRE S W Y +TA IR+ +G+
Sbjct: 490 RERVGGILANGFKLGGRSFVFLAYSTSALREHSVWYLNEFYHEELGYCITADYIRDSIGH 549
Query: 382 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK--IEIGK--TKYVFSDGIGKV 437
F E + YAARL Q+F++++ ++ + DE E + D+ GK + Y+F+DG+G +
Sbjct: 550 FPEDSKL--YAARLAQAFTATEPSVKIRRDEWEEMEDLSPPPPPGKRVSPYLFTDGVGTI 607
Query: 438 SAEFARKV-----------------ASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-- 478
S ++ A +CG + +IR+ GYKG+VA D K
Sbjct: 608 SRSLGDRIWGKLISERGGDLTQAVAAGRCG-----SISGRIRFLGYKGMVAVDEEMDKDN 662
Query: 479 ---KLSLRDSMRKYES---ELTKLDVLAWSKY---QPCFLNRQLISLLSTLGIWDEIFEK 529
+ LR SMRK++S ++ + D+ + F N+ L+++L LG+ + FEK
Sbjct: 663 TGIHMRLRPSMRKFDSKEEDMWEADIEIARHFAYPNNMFTNKALVTVLENLGVGCDQFEK 722
Query: 530 KQREAVRQLDAILTDPLKAQEAL---ELMSPGENTNILKELLICGYKPDA---------- 576
Q+ AV ++ I D ++ L L +IL + G +
Sbjct: 723 LQQSAVASVERIHDDIDAWRDVLRSNNLCRTFRLAHILDNFVAMGLEMKGTPSRPRRAPL 782
Query: 577 ----EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 632
PF + + R + L +++ R IP+ ++G DE G +++ AG
Sbjct: 783 PGFDSPFFKKIREVARMAILRDIKHDARFGIPDSYKLVGIADE------GPAYIK---AG 833
Query: 633 YRQLH--GESSLFSS---SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------A 681
++ G+ +++ + ++G +++++P H GDV+ + A+ P +
Sbjct: 834 KENVYCLGDREIYACVQRTEGEDPVWLEGNCIISRSPVTHVGDVQRVHAIGRPPADMLSS 893
Query: 682 LHHMVDCVVFPQKGMRYILTML 703
+ + VV P G R + +ML
Sbjct: 894 FGKLKNLVVLPSVGDRSLCSML 915
>gi|393247227|gb|EJD54735.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 1217
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 132/481 (27%), Positives = 218/481 (45%), Gaps = 67/481 (13%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI-HSTDLSPRGSSATD 321
V V+P+ V GP + NRVL +R +NF+R++F+D D + D++
Sbjct: 397 VSVSPANVSIIGPIPDDLNRVLYQYRAYHENFIRVAFVDNDGQPFRYDPDVN-------- 448
Query: 322 ITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRE--SSAWM---FASRYGLT--AAE 374
T+ + +L LR+G+ +G R F+FLA+S S L++ W+ F G T A+
Sbjct: 449 -TQALVDAHVLPILRDGLTLGGRLFKFLAYSQSGLKQHWEQVWLVHTFTDALGHTHSAST 507
Query: 375 IREWMGNF-REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 433
IR +G F ++ R A+ AR+ +FS++ + S+ + + +PD+ G +DG
Sbjct: 508 IRASLGTFTKDERCPARVGARMSLAFSATVPSGSLSVARLRNLPDIG---GDGHTCMTDG 564
Query: 434 IGKVS-AEFARKVASKCGLKDN---------PPSAFQIRYGGYKGVVAADPT-SSKKLSL 482
G +S A R C + PS Q+R G KGV+ DPT ++ +
Sbjct: 565 AGLISRAAMDRAWIHFCAARGRRGRTAELPPAPSVIQVRVKGAKGVLLVDPTLQGLRIVV 624
Query: 483 RDSMRKYES--ELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD 539
R SM K+ + + +++ A++ FLNR LI +L G+ E F Q++ V +
Sbjct: 625 RPSMVKFSAGEQYDNIEICNAFTAPSRAFLNRPLIMVLEARGVPKETFLWLQQQVVAETQ 684
Query: 540 AILTDPLKAQEALELMSPGENTNILKELLICGYK----PDAE-------PFLSMMLQTFR 588
+ L A LE GE+ N+ L + P+ E F++ L
Sbjct: 685 LAVQSLLPAAALLESNGLGESLNLPTLLRRIASRFANFPEVEQHLVAEDAFMTRCLDFAV 744
Query: 589 ASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRS 648
L L+ + RI +P+ +++G D L G+V V I
Sbjct: 745 NHVLRGLKFRGRIPVPDSWTLVGVPDHHGILEEGEVLVGI--------------MDGDPL 790
Query: 649 RQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP------ALHHMVDCVVFPQKGMRYILTM 702
R R++ +G V V ++P HPGDV V++A+ P L +C+VF KG R ++
Sbjct: 791 RLRYL-KGGVTVTRSPVCHPGDVMVMRAIGPPRAGSAFELLRPKNCIVFSTKGSRSPVSC 849
Query: 703 L 703
L
Sbjct: 850 L 850
>gi|405974297|gb|EKC38953.1| Translocon-associated protein subunit beta [Crassostrea gigas]
Length = 1284
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/251 (37%), Positives = 135/251 (53%), Gaps = 17/251 (6%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
G + R+ +TP++ F E V NR++R + + F+RI F DED +K+ + ++P
Sbjct: 457 GYSNIRRIVLTPTKHVFYPKEPIVQNRIIRQYAEEY--FIRIVFRDEDYEKVSA--IAPN 512
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEI 375
+ + + L G I R++EFL S+SQLRE W F A I
Sbjct: 513 SLDS-------VIDAMKQFLCAGFRILTRRYEFLGCSNSQLREHGFWFFCPNDDTNAQMI 565
Query: 376 REWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIG 435
R+ G+ R VA Y +R G FS+S++T+ V M + E++ IE Y FSDGIG
Sbjct: 566 RDNCGDIYLERCVASYVSRFGLCFSASRDTVDVGMQDGELVHQKDIEW--NNYCFSDGIG 623
Query: 436 KVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESE 492
K+S A KV G K PSAFQIRYGG KGVV+ DP ++ L +R+SM K+ SE
Sbjct: 624 KISPCLANKVTKALGYK-VKPSAFQIRYGGCKGVVSQDPDLGEEKDVLVIRESMNKFNSE 682
Query: 493 LTKLDVLAWSK 503
KL++L +K
Sbjct: 683 SKKLEILQVTK 693
>gi|389741441|gb|EIM82629.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1527
Score = 139 bits (351), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 112/382 (29%), Positives = 178/382 (46%), Gaps = 42/382 (10%)
Query: 338 GILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQ 397
G+ + ++ F S+SQLR ++ + ++ G+F +I NVAK A R+G
Sbjct: 47 GLFLNGVQYRFYGHSNSQLRSGGCFLRRANSDEELDQVVYAKGDFGKIMNVAKRAKRIGL 106
Query: 398 SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN--- 454
FS ++ + I D+KI VFSDG G +S + +++ K G+ N
Sbjct: 107 LFSGAEVDYMLDPQYTGDIDDLKI----GDEVFSDGCGLISRWLSVQISKKKGIVHNRRR 162
Query: 455 -PPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLD-----VLAWSK-YQPC 507
P FQIRY GYKGV P + RK + + T D ++ +SK +
Sbjct: 163 YTPCVFQIRYRGYKGVQMLHPPLDAAKIHQAEFRKSQKKFTATDDMIFSIVDYSKPHTFG 222
Query: 508 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKEL 567
LN ++ LLS+LG+ ++ F Q+E + +DP+ A EL S +I + +
Sbjct: 223 RLNNEITILLSSLGVTNDDFVALQQEYFDWVQRASSDPV---HAFELFSTLGKHDIAERV 279
Query: 568 LICGYKPDAEPFLSMMLQTFRASKLLEL-------RTKTRIFIPNGRSMMGCLDETRTLN 620
L+ G P + +++ +A+++ + + R+ I R + G D L
Sbjct: 280 LLDGLD---SPTIVKQIRSAQAAEIQAFHKEGDATKERVRMLIRKSRRLFGVCDPFGVLK 336
Query: 621 YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 680
GQV V+I+ SR+ I V+V +NPCLHPGD+ L+AV+ P
Sbjct: 337 EGQVHVRIT---------------VSRAGASTINHLDVIVVRNPCLHPGDILKLRAVDHP 381
Query: 681 ALHHMVDCVVFPQKGMRYILTM 702
L H+VDCVVFP G R +M
Sbjct: 382 QLSHLVDCVVFPSVGKRAAPSM 403
>gi|393235346|gb|EJD42902.1| RNA-directed RNA polymerase [Auricularia delicata TFB-10046 SS5]
Length = 1654
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 131/442 (29%), Positives = 197/442 (44%), Gaps = 66/442 (14%)
Query: 279 VSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG 338
SNR+LR+ D F+ +SF + + + + D R +A G
Sbjct: 48 TSNRILRN--DDPSKFISVSFREFRMPEYTTVDYIKRFLAA------------------G 87
Query: 339 ILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM---GNFREIRNVAKYAARL 395
+ + DR++ F S SQLRE ++ R + E+ + G+F I NVAK A R+
Sbjct: 88 LFLDDRQYRFYHHSPSQLRERGCFL---REAASDEELDARIYSYGDFSRINNVAKRAKRI 144
Query: 396 GQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL---- 451
G FS + ++ E I D+ + +FSDG G VS A ++ + +
Sbjct: 145 GLLFSGASIDYNLDPQFTEDIDDIIV----GNELFSDGCGLVSRRLAVALSRQKKIVFRG 200
Query: 452 KDNPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYESELTK-LDVLAWSK-YQ 505
PS FQIRY GYKGV+ P + R SM+K+ + L V+ +S Y
Sbjct: 201 ARYTPSVFQIRYRGYKGVLMLHPELDRSHGPLAQFRRSMKKFNATLDDTFTVVGYSTPYA 260
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILK 565
LN +I L+S+LGI +E KQ E D +L A++L+S + + +
Sbjct: 261 FGRLNNDVIVLISSLGITNETLLAKQAE---YFDWLLRAVSDVSCAVDLLSCLGDFAMAE 317
Query: 566 ELLICGYKPDA-----EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN 620
+L+ G D +S +++FR R ++R+ I R + G D L
Sbjct: 318 RVLLDGLDADHVQKALAGIVSREVKSFRKDNG---RLRSRMIIRKSRLLFGVCDPFGVLR 374
Query: 621 YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 680
G+V V++S + R + V+V KNPCLHPGDV L AV P
Sbjct: 375 EGEVHVRVS---------------AGRQPATTLTHCDVLVVKNPCLHPGDVLKLHAVENP 419
Query: 681 ALHHMVDCVVFPQKGMRYILTM 702
L H+VDCVVFP G R +M
Sbjct: 420 RLAHLVDCVVFPSVGKRAPASM 441
>gi|389748392|gb|EIM89569.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1274
Score = 139 bits (349), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 145/577 (25%), Positives = 261/577 (45%), Gaps = 98/577 (16%)
Query: 169 LPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYE- 227
+ ++ F++ LL++NG ++ + N R+ + C EH D L++ E
Sbjct: 331 MNWDTAFQVELLMRNGLLSTTEVWVNL-------RSHIDNLCAEHGSDASEILRQFSVEL 383
Query: 228 ------PSRWLTDQYRKYMTSRSKPSS---PAISLDDGLVYVHRVQVTPSRVYFCGPEIN 278
S+ + R K + L D H + +TP+R+ GP
Sbjct: 384 ITGAASGSKTSPKDLLDMICGRMKDERMRLRKMDLPDSYFMCHHITITPTRMLLEGPYPT 443
Query: 279 VSNRVLRHFRRD----IDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILST 334
+NRV+R ++ + NF+R+ F DED R + A D + R+L
Sbjct: 444 QNNRVIRGYQEYDSTLVGNFVRVDFRDEDR-------FQYRFNRAVDGGYL-LEKRVLDF 495
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSA-WM---FASRYG---------LTAAEIREWMGN 381
L+ G +G R F+F A+SSS LR+S A W F G +TA IR +GN
Sbjct: 496 LKPGFSLGGRHFDFFAYSSSSLRDSHALWAIHPFDVPVGASPTILCGHITADMIRHSLGN 555
Query: 382 FREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAE 440
F + N +K AAR+GQ+ S++ ++ + ++ + D +++G++ Y +DG+G +S++
Sbjct: 556 FSTVINQPSKLAARVGQTCSATTPSVRLKREQWD---DDMVDLGESPYEHTDGVGTISSD 612
Query: 441 FARKV----ASKCGLKDN---PPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE 492
++ SK KD P AFQIR+ G+KGVV D + ++ LR SM+K++ +
Sbjct: 613 LRDEIWATLCSKGWDKDKDRAKPDAFQIRFLGFKGVVVVDYCLTGIRMRLRPSMKKFDVD 672
Query: 493 LTKLD------VLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL----DAIL 542
+ + V A+ + LNR I +L G+ + F K Q +A + D+I
Sbjct: 673 EEEKNNASFEIVRAFDRPNRYSLNRSTIMVLEDRGVPIDTFMKLQEKAKETIFTAGDSIA 732
Query: 543 T--------------DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR 588
+ D E L ++ + N+++ PFL +L+
Sbjct: 733 SFVAFLRINRLGIGFDLPLILERLAVLKDSSHKNVVRSF--------ENPFLERVLRFAM 784
Query: 589 ASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ-----ISGAGYRQLHGESSLF 643
S+L +L+ K +I +P G ++G DE GQ ++Q S A ++ + +
Sbjct: 785 NSRLRDLKHKAQIPVPGGFKLVGVADE------GQAYIQEGLDPSSVATLKEGEIYACVR 838
Query: 644 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 680
++ +F+ +G + ++P PGD++ ++A+ P
Sbjct: 839 DGHKAEPKFL-KGDCFITRSPVNDPGDIQRVRAIGKP 874
>gi|390596235|gb|EIN05637.1| RdRP-domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 1230
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 147/507 (28%), Positives = 227/507 (44%), Gaps = 85/507 (16%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED-LDKIHSTDLS 313
+G+ V VTPS + + SNRV+R + +F+R+ F DED L DL
Sbjct: 399 NGIFDCLHVAVTPSSIIPREQYPDRSNRVIRRYPNHQQHFVRVQFCDEDYLQYRFDRDLD 458
Query: 314 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL--- 370
G + R+ +R GI IG R FEFLA+S S L++ + W F + L
Sbjct: 459 GDGF---------VRDRVGGVMRTGIRIGGRAFEFLAYSQSALKDHAVW-FVRPFNLDGH 508
Query: 371 --TAAEIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI-EIGKT 426
A IR+ +G F + IR + Y AR+ Q+F+++ +++V +EI+ IPD++I +
Sbjct: 509 RVDAEAIRQSLGTFTKVIRFPSLYGARMSQAFTATDPSITVTPNEIKRIPDIEIVDSTGQ 568
Query: 427 KYVFSD-------------------GIGKVSAEFARKVAS--------KCGLKDNPPSAF 459
K F+D G+G +S A+ +AS K G K P AF
Sbjct: 569 KRQFTDGSLPSTLSYADPIDYFRLAGVGTISLALAKDIASALLAVRKRKRG-KYFKPRAF 627
Query: 460 QIRYGGYKGVVAADPTSSKK-LSLRDSMRKYESELTKLDV-LAWSKYQPC--FLNRQLIS 515
QIR+ G KG+V+ D + L LR SM K+ES LD+ +A + +P LNR LI
Sbjct: 628 QIRFAGSKGMVSVDINEEGRVLCLRPSMIKFESP-DSLDIEIAKTFDRPGKFLLNRPLIM 686
Query: 516 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI-----LKELLIC 570
+L LG FE Q AV + +A K+ LE+ G + + L
Sbjct: 687 ILEGLGAPAAAFEALQDAAVEEAEAARESLQKSARMLEVHGLGGAYRLPSVADVPHRLGL 746
Query: 571 GYKPDA--------EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 622
+A + F+ M+ L EL+ RI +P+ +++G D L G
Sbjct: 747 PRSSEARGTTQCIDDEFMDRMVAFAVNHVLRELKHHARIPVPDSWTLVGIADIHGVLEEG 806
Query: 623 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
+VF + + QR ++G V+V ++P HPGDV++ +A+ P
Sbjct: 807 EVFACV---------------QPPQGGQRVYLEGNVMVTRSPVAHPGDVQMARAIGRPPP 851
Query: 683 HHMVD------CVVFPQKGMRYILTML 703
D V+F KG R + + L
Sbjct: 852 GSAYDTEPIPNTVIFSVKGSRPLPSAL 878
>gi|299740231|ref|XP_001838952.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
gi|298404148|gb|EAU82883.2| hypothetical protein CC1G_05505 [Coprinopsis cinerea okayama7#130]
Length = 1214
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 154/579 (26%), Positives = 240/579 (41%), Gaps = 124/579 (21%)
Query: 233 TDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDID 292
D ++ K P D L H V TPSR GP NR++R +R D
Sbjct: 323 ADVFKDLKKKSFKAHPPRQDQDSKLFECHHVTCTPSRFILVGPNPTGFNRIIRKYRDYTD 382
Query: 293 NFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFS 352
+F+R+ F DED R S D + T + TRI L+ GI I R FEFLA+S
Sbjct: 383 HFIRVDFRDEDGQYF-------RSSFEVDAS-TLVKTRIGGVLKGGITIAGRHFEFLAYS 434
Query: 353 SSQLRESSAWM-----FASRYG----LTAAEIREWM-----GNFREIRNVAKYAARLGQS 398
SS ++ S W F R G +TA IRE + N + +R +KYAAR+ +
Sbjct: 435 SSSMKVHSTWFLNPFEFKDRTGQRIRVTAQRIREDIIPDIPANVQLMRTPSKYAARIALA 494
Query: 399 FSSSKETLSVHMDEIEII---PDVKIEIGKTKY--------------------------- 428
F++S+ + E + PD+ + K
Sbjct: 495 FTTSESVDGARLKRDEWVGPFPDIYPAVSHVKVRREEEQEEEGEGESDTDEEESADEYDP 554
Query: 429 --------VFSDGIGKVSAEFARKV----ASKCGLKDNP---PSAFQIRYGGYKGVVAAD 473
F+DG+G +S E ++ K GL+ +P PSA+ +R GYKGVVA D
Sbjct: 555 QFKMVKLPPFTDGVGSISKELNDRIWKEYYEKRGLEVHPNFYPSAWMLRMLGYKGVVAVD 614
Query: 474 PTSSK--KLSLRDSMRKYESELTKLDVLA---------WSKYQPCFLNR-------QLIS 515
P L LR SM K+ES L + + K C+LNR L
Sbjct: 615 PEMEGPIHLRLRKSMHKFESLEDDLSQHSEVRIEIAEIYDKPGLCYLNRFYLPFFPHLHR 674
Query: 516 LLST-------LGIWD------EIFEKKQREAVRQ---LDAILTDPLKAQEALELMSPGE 559
LL T + ++D E+FE+ QR AV +DA + + + L +P +
Sbjct: 675 LLITPVLFRPLVMMFDLHDRPLEVFEELQRMAVADAMTIDASIDQFSRLMQMHGLGNPFK 734
Query: 560 NTNILKELLICGYKPDAEPFLSMMLQTFR----ASKLLELRTKTRIFIPNGRSMMGCLDE 615
T +L+ + G + +S + + R + + +R + RI +P ++G DE
Sbjct: 735 ITYLLEHVEALGLSLEELDQVSPLWKALRDVAFKTVMAGIRYEARIPVPKSWVLVGVADE 794
Query: 616 TRTLNYGQVFVQISGAGYRQLH--GESSLF---SSSRSRQRFIVQGLVVVAKNPCLHPGD 670
GQ GY ++ E+ +F + + ++G VV +NP + PGD
Sbjct: 795 GPAYK-GQ-------PGYENVYCLPENCIFVCIQEDQDSEPEWLEGDCVVTRNPVVRPGD 846
Query: 671 VRVLKAVNVPA------LHHMVDCVVFPQKGMRYILTML 703
++ ++A+ P + + VVF +G R + + L
Sbjct: 847 IQKVRAIGKPPRGVKCLFRDLKNVVVFSSQGRRSLPSCL 885
>gi|340960580|gb|EGS21761.1| hypothetical protein CTHT_0036280 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1520
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 105/324 (32%), Positives = 164/324 (50%), Gaps = 34/324 (10%)
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 451
A R+G FS+++ + D +E IPD++ G YVF+DG G +S A+ +A + G+
Sbjct: 2 AKRIGLLFSTARVAKVIPPDRVEDIPDIESPDG---YVFTDGCGLISPHLAQDLARRLGI 58
Query: 452 ----KDNPPSAFQIRYGGYKGVVAADP--TSSKK--LSLRDSMRKYES-ELTKLDVLAWS 502
+ PS QIRY GYKGVV DP TS + L +R SM+K+ + V+ +S
Sbjct: 59 VFRDRRYTPSVLQIRYRGYKGVVTVDPRMTSDPRILLRMRKSMKKFSGGDDHSFSVVEYS 118
Query: 503 K-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENT 561
K + FLN ++I LL+ LG+ EI +KKQ + L DP + A +S
Sbjct: 119 KPFTYGFLNDEVIVLLNALGVDREIIKKKQDNHFKFLADASRDP---RSAFRFLSGLNMP 175
Query: 562 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTL 619
++ + +L+ + S++ + +K+L R K RI IP R + G D L
Sbjct: 176 DLAESVLVESFDAIRPRIRSLVKNEY--AKMLNKREEQKCRILIPKSRLLFGVCDAWGVL 233
Query: 620 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 679
G+ V+I+ E+ L + ++ + V+V +NPCLHPGD++ + V
Sbjct: 234 KEGECAVKITLE-------ENGLPMALKNCE-------VLVTRNPCLHPGDLQKFRVVER 279
Query: 680 PALHHMVDCVVFPQKGMRYILTML 703
P L H+VDC+VF KG R M+
Sbjct: 280 PELSHLVDCIVFSTKGKRPAADMM 303
>gi|392564352|gb|EIW57530.1| RdRP-domain-containing protein [Trametes versicolor FP-101664 SS1]
Length = 1232
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 133/498 (26%), Positives = 231/498 (46%), Gaps = 74/498 (14%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
G + V VTP+R+ GP SNRV+R + +NF+R+ F DE+ P+
Sbjct: 417 GTLKCFHVIVTPTRILLEGPYDTQSNRVVRKYHDYRENFVRVEFRDENRMAFR----WPK 472
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG------ 369
++ + I R + L+ G+ I R+F FL +S+S LRE + W F S +
Sbjct: 473 EVNSASL----IEERFGTILKEGLEIAGRRFRFLGYSNSGLREHTTW-FMSDFEHPDEGL 527
Query: 370 LTAAEIREWMGNFREIRNV-AKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY 428
LT IR+ +GNF + + +KYAAR+ Q+FS + ++ + D+ + D ++GK +
Sbjct: 528 LTPDRIRDSLGNFSNVNTIPSKYAARIAQAFSGTDPSVRIRRDQWD---DQLADLGKKPF 584
Query: 429 VFSDGIGKVSAEF----------ARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SS 477
+DG G +S A+ +K LK PSA+QIR+ G+KG+V D T
Sbjct: 585 WHTDGQGTISVGLRDEIWDVLVKAQPDKAKLTLK---PSAYQIRFLGFKGIVVVDETLEG 641
Query: 478 KKLSLRDSMRKYESEL-----TKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQ 531
+ LR +M K+++ ++++ Y L R LI +L LG+ E + Q
Sbjct: 642 VYMRLRPTMNKFKAHADDEADAEIEIAKAFIYPGTARLCRPLIMVLEDLGVRKEAMLELQ 701
Query: 532 REAVRQLDAILTDPLKAQEALELM---SPGEN---TNILKELLICGY-------KPDA-- 576
A ++T E + L+ + G++ +IL+ L G PD
Sbjct: 702 NLAKA---VVVTASDSMGETINLLRKHALGDSFGLRHILEHLRRAGMCMRREAGSPDVMD 758
Query: 577 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 636
F+ +++ + L E++ RI IPN ++G DE G ++Q +++
Sbjct: 759 NDFILQLVKYAQHHILHEIKHDARIPIPNAHQLVGVADE------GPAYMQREEYKDKEV 812
Query: 637 H--GESSLFS---SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHM 685
G +F+ + V+G V ++++P +HPGDV+ ++A+ P ++
Sbjct: 813 FCLGMGEIFACVEQPDGGEPLYVKGQVTISRSPHIHPGDVQRVRAIGKPPDDKLCLFRNL 872
Query: 686 VDCVVFPQKGMRYILTML 703
+ VV P G R + + L
Sbjct: 873 RNVVVLPSVGERSLASCL 890
>gi|409044334|gb|EKM53816.1| hypothetical protein PHACADRAFT_125775, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 1091
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 120/435 (27%), Positives = 210/435 (48%), Gaps = 57/435 (13%)
Query: 281 NRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGIL 340
NR+L+ D F+ +SF +K+ D SPR + ++ + G+
Sbjct: 52 NRILQS--DDATKFVLVSF-----EKLRFPDTSPRVAQEY----------MIRFFKAGLF 94
Query: 341 IGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFS 400
+ ++ F S+SQLR S ++ + + +G+F +I + +K A R+G FS
Sbjct: 95 LNGTQYRFYGHSNSQLRSRSCFLRQAENDEELDALIYRLGDFLKITSASKRAKRIGLLFS 154
Query: 401 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL----KDNPP 456
+K ++ + I D+ + G+T FSDG G +S +FA++++ + + P
Sbjct: 155 EAKIDWNLQPRWTKDIDDIVVN-GET---FSDGCGLISVKFAKQLSKHKRILYHGRPYTP 210
Query: 457 SAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF----LNR 511
+ +QIRY GYKGV+A DP ++ + R S +K+ + T+ D + + F LN
Sbjct: 211 TVYQIRYRGYKGVLAIDPRLTTDHVHFRKSQKKFTA--TQNDTFSVVDHSTPFAFARLNN 268
Query: 512 QLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICG 571
++ LL++LGI + F KQR L +D +A A +L+ + + LL+ G
Sbjct: 269 DIVVLLASLGISSDAFLAKQRGYHEWLQKA-SDGWEA--AFDLLCAANRYAMAERLLLEG 325
Query: 572 YKPDAEPFLSMMLQTFRASKLLELRT----KTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 627
D++P + ++ + S+L +R + R +P R + G D L G+V V+
Sbjct: 326 I--DSKP-VRQEIRALQNSELASIRKNDRLRVRTLVPKSRFLFGVCDPYSVLREGEVHVR 382
Query: 628 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 687
I G ++L + V+V +NPCL+PGD L+AV+ PAL H++D
Sbjct: 383 IMIPR----KGITTLTNVD-----------VLVVRNPCLYPGDCLKLRAVHHPALDHLID 427
Query: 688 CVVFPQKGMRYILTM 702
C+VF +G R +M
Sbjct: 428 CLVFASRGRRAAPSM 442
>gi|343426952|emb|CBQ70480.1| related to RNA-directed RNA polymerase [Sporisorium reilianum SRZ2]
Length = 1037
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 123/451 (27%), Positives = 220/451 (48%), Gaps = 59/451 (13%)
Query: 259 YVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSS 318
++H + +TP+RV GP ++SNRV+R + D+F R+S E + +T ++P +
Sbjct: 132 FLH-IDLTPTRVLLSGPHWHMSNRVIRSYPGHWDHFARLSITSESREG--ATTITP--NY 186
Query: 319 ATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF-----ASRYGLTAA 373
D I R+L L+NGI++ R+F+ LA+SSS + + W A+ + A
Sbjct: 187 GFDDAERYIRGRVLDILKNGIIVAGRRFQLLAWSSSSMSSHTVWFVTPFLDATGRLVDAN 246
Query: 374 EIREWMGNFRE-IRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKIEIGKTKYVFS 431
+R+ +GNF++ IR A YA GQ H D + +I P + ++ ++ Y+ +
Sbjct: 247 SVRKSLGNFKDVIRKPAMYADN-GQD----------HTDGVGQISPALMADVWES-YLVN 294
Query: 432 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYE 490
G EF ++ LK + PSA QIR GG KG+++ +P + K L +R SM K++
Sbjct: 295 HG------EFRKRKL----LKASAPSAIQIRLGGSKGMLSLNPRLTGKVLYIRPSMSKFD 344
Query: 491 SELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 549
S+ L+V + S+ LNR L++ L G+ F Q EA+ Q+ + +
Sbjct: 345 SQHQDLEVANSSSRCLTAKLNRPLVNALDDRGVHASAFIAIQDEAISQIGRARHNFDETA 404
Query: 550 EALELMSPGENTNI------LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
+ S G N+ + ++ + D E F ++ + A+ L +++ K RI +
Sbjct: 405 RLVSAFSFGTGCNLRILFEKVHKVGLGAASTDPESFFLVLAKAVTAAALGDMKRKARIPV 464
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
G +++G DE L G+VFVQ+ + Q+ R I+ G ++ ++
Sbjct: 465 A-GVTLLGIADEFGYLKEGEVFVQVETVDFGQV-------------SRRILTGRKLIGRS 510
Query: 664 PCLHPGDVRVLKAVNVPALHHMV---DCVVF 691
P + P D+ +++ P H ++ + VVF
Sbjct: 511 PTIDPSDITMVQCKKPPPGHPLLQLRNVVVF 541
>gi|403337310|gb|EJY67868.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 137/562 (24%), Positives = 227/562 (40%), Gaps = 133/562 (23%)
Query: 229 SRWLTDQYRKYMTSRSKPSSPAI---SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 285
SR L + YR Y+ S + I + +D + R+ TP+ F + +NRV+R
Sbjct: 418 SRTLLEAYR-YLEKNSGEITLEIQNETENDNDLRQRRIYQTPTLTLFFANQREQTNRVIR 476
Query: 286 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
F++ DNF R+ +++ L K H + + + + ++ + IGD
Sbjct: 477 QFKKYKDNFFRLVLVNDQLQKFHFGSMKQK----------EMLQHMKDLMKQELYIGDSL 526
Query: 346 FEFLAFSSSQLRESSAWMFASRY--GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 403
+ L +S+SQL+ S WM S + I +G F K AR GQ FS++K
Sbjct: 527 AQVLNYSNSQLKNHSVWMVCSTSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTK 586
Query: 404 ETLSVHMD-EIEIIPDVKI-------------EIGKTKYVFSDGIGKVSAEFARKVASKC 449
+ D +E+I D++ + + YVF+DG G
Sbjct: 587 YVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQREGNYVFTDGCG-------------- 632
Query: 450 GLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 508
G KGV+ P +K+ LR S K+ E L+V+ S + +
Sbjct: 633 ---------------GVKGVLMLKPDLDGRKVQLRKSQIKFACENWGLEVIRCSTFSQGY 677
Query: 509 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDA-ILTDPLKAQEALELMSPGEN------- 560
LNRQ+I LLS LG+ D +F A+ L+ + L ++ + + S +N
Sbjct: 678 LNRQVILLLSCLGVDDNVFLSHLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRKDENEN 737
Query: 561 ---TNILKELLICGYKPD---AEPFLSMMLQTFRASKLL------ELRTK---------- 598
N +K L + P + F + QT + + + E+RTK
Sbjct: 738 KSKANEMKNELDVFFGPSKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQVF 797
Query: 599 --------------------------TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 632
RI I N +++G +DET TL+ G+++++I+
Sbjct: 798 FLENEPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGS 857
Query: 633 Y----------------RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 676
Y G+ S + + I++G V+V KNPC HPGD+R L+A
Sbjct: 858 YDYDQIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA 917
Query: 677 VNVPA-LHHMVDCVVFPQKGMR 697
V + H+ + +VF KG R
Sbjct: 918 VGEHSTFEHLTNVIVFSSKGCR 939
>gi|403374620|gb|EJY87268.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1352
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 137/562 (24%), Positives = 227/562 (40%), Gaps = 133/562 (23%)
Query: 229 SRWLTDQYRKYMTSRSKPSSPAI---SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLR 285
SR L + YR Y+ S + I + +D + R+ TP+ F + +NRV+R
Sbjct: 418 SRTLLEAYR-YLEKNSGEITLEIQNETENDNDLRQRRIYQTPTLTLFFANQREQTNRVIR 476
Query: 286 HFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRK 345
F++ DNF R+ +++ L K H + + + + ++ + IGD
Sbjct: 477 QFKKYKDNFFRLVLVNDQLQKFHFGSMKQK----------EMLQHMKDLMKQELYIGDSL 526
Query: 346 FEFLAFSSSQLRESSAWMFASRY--GLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 403
+ L +S+SQL+ S WM S + I +G F K AR GQ FS++K
Sbjct: 527 AQVLNYSNSQLKNHSVWMVCSTSIPEIQPNAIISRLGTFTNEGGNLKMFARRGQCFSTTK 586
Query: 404 ETLSVHMD-EIEIIPDVKI-------------EIGKTKYVFSDGIGKVSAEFARKVASKC 449
+ D +E+I D++ + + YVF+DG G
Sbjct: 587 YVTKLDPDSNVEVIEDIERPKKNDPDLAQAEPDQREGNYVFTDGCG-------------- 632
Query: 450 GLKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCF 508
G KGV+ P +K+ LR S K+ E L+V+ S + +
Sbjct: 633 ---------------GVKGVLMLKPDLDGRKVQLRKSQIKFACENWGLEVIRCSTFSQGY 677
Query: 509 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDA-ILTDPLKAQEALELMSPGEN------- 560
LNRQ+I LLS LG+ D +F A+ L+ + L ++ + + S +N
Sbjct: 678 LNRQVILLLSCLGVDDNVFLSHLHTALENLNVEKVIKNLYSRSTVFMTSKSKNRKDENEN 737
Query: 561 ---TNILKELLICGYKPD---AEPFLSMMLQTFRASKLL------ELRTK---------- 598
N +K L + P + F + QT + + + E+RTK
Sbjct: 738 KSKANEMKNELDVFFGPSKIFSPIFKHCLAQTLKQIEQVKKGLPEEMRTKDLHLSPKQVF 797
Query: 599 --------------------------TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 632
RI I N +++G +DET TL+ G+++++I+
Sbjct: 798 FLENEPIFDSILSNMVLGLAVNLKKKARIRIKNSCTLIGVIDETGTLDEGEIYLKINRGS 857
Query: 633 Y----------------RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 676
Y G+ S + + I++G V+V KNPC HPGD+R L+A
Sbjct: 858 YDYDQIQEKLVDEYDEIENADGKKSRLAEINTWLDQIIEGDVIVTKNPCSHPGDIRKLRA 917
Query: 677 VNVPA-LHHMVDCVVFPQKGMR 697
V + H+ + +VF KG R
Sbjct: 918 VGEHSTFEHLTNVIVFSSKGCR 939
>gi|403358455|gb|EJY78878.1| RNA-directed RNA polymerase [Oxytricha trifallax]
Length = 1079
Score = 134 bits (337), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/450 (25%), Positives = 213/450 (47%), Gaps = 59/450 (13%)
Query: 280 SNRVLRHFRRDIDNFLRISFI--DEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRN 337
SN+V+R ++D FL+I F+ +++L+ ++ + +G I R + + + L
Sbjct: 259 SNQVIRRHFTNVDKFLKIKFLGGNQELELLNDQYMRIKGD--YQIRRNLVTNLLWNILGY 316
Query: 338 GILIGDRKFEFLAFSSSQLRESSAWMF--------------ASRYGLTAA----EIREWM 379
GI I ++ F+FL +S+SQL++ S W S YG+ A +E++
Sbjct: 317 GISINNKTFKFLGYSNSQLKDRSFWFLRQAVENDLKLNSAIMSMYGIVAIPSNLNKKEYL 376
Query: 380 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPD-VKIEIGKTK-YVFSDGIGKV 437
G E+ N ++ +++SS + + ++I++I D V+ + + + F+DG G +
Sbjct: 377 G---EVLNC---HGKVANNYTSSDFIIKLERNQIQVINDIVRHDYQDNRDFNFTDGNGLI 430
Query: 438 SAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESELTKL 496
S + + + GLK+ S +Q+R GG KG + D KK+ LR SM K ++ +T L
Sbjct: 431 SQKLSNMINQHYGLKN--CSVYQVRIGGAKGTLTVDQRLKGKKVILRSSMIKLKNNITDL 488
Query: 497 DVLAWSKYQPCFLNRQLISLLSTLGIW-DEIFEKKQREAVRQLDAILT----------DP 545
+++ K + NRQ+I+L G+ +E FE ++ Q L+ D
Sbjct: 489 NIVQCGKAGLGYSNRQVIALFEHDGVHKEEFFELIKKNIQYQFFKQLSQGQAQSVSYYDL 548
Query: 546 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 605
++ L + I K+ I Y +P ++ + + ++ K RI++ N
Sbjct: 549 AFLEQHLTHLVGAFKYFIRKKPEILRY----DPLFQSIVNQLKQEIMRQITEKGRIYMKN 604
Query: 606 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
++G D L ++F+QI Y L + Q +++G VVV +NP
Sbjct: 605 SVVLLGVPDFLGILQENEIFLQI--PKYNDL---------EQGEQYQVIRGDVVVTRNPA 653
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
LHP D+R L AV+ P ++ + VVF +G
Sbjct: 654 LHPNDIRKLVAVDRPEFRYLRNAVVFSTQG 683
>gi|449550168|gb|EMD41133.1| hypothetical protein CERSUDRAFT_111700, partial [Ceriporiopsis
subvermispora B]
Length = 595
Score = 132 bits (331), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/396 (27%), Positives = 175/396 (44%), Gaps = 51/396 (12%)
Query: 330 RILST-LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI--- 385
RIL + G+ + ++ F F+ + ++E F T ++E G+ E+
Sbjct: 59 RILKKWVHEGVTVASARYAFFGFTENHVKEGRVICFREDESWTVRHVKEQFGDLDEVYQK 118
Query: 386 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 445
KYAARLG SFSS+ ++L V +E +PD++ G + +DG G + FA ++
Sbjct: 119 HGYGKYAARLGLSFSSTVQSLDVAPEEALEVPDLRAPDGS---LHTDGCGMICDSFAAEI 175
Query: 446 ASKCGLKDNPP--SAFQIRYGGYKGVVAADPTS----------------SKKLSLRDSMR 487
C + P + FQ+R GG KG++ P S K++ R SM
Sbjct: 176 ---CHAHELPADTTVFQVRRGGIKGLLVRYPDDKFAELCAKHRGIPTPPSIKMAYRPSML 232
Query: 488 KYESELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
KY T L++ S+ LN Q I +L TLGI E FEK +E + + I D
Sbjct: 233 KYSGGPTALELNDCSRCPTSARLNAQFIIMLLTLGINIETFEKMLKEHLDIIGCITHDRD 292
Query: 547 KAQEALELMSPGENTNILKE---LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
A L+ + + + L+ Y +EP++ L+ F+A + L K + +
Sbjct: 293 VALRYLKGELDASDHDTFGQDVYALLLAYHDLSEPYVEWKLKQFQALQYKSLYKKLNLRV 352
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
+ G +DE L +VF+ + G + +V G V+VA+N
Sbjct: 353 EESCYVYGVVDEDGILEGDEVFINLPG-------------------RTGVVLGNVLVARN 393
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYI 699
P PGD R L+AV+ P L H C+VF +K I
Sbjct: 394 PSYSPGDFRKLRAVHDPRLKHHKHCIVFSRKASHSI 429
>gi|443920944|gb|ELU40764.1| calcium:hydrogen antiporter [Rhizoctonia solani AG-1 IA]
Length = 862
Score = 129 bits (323), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 115/393 (29%), Positives = 183/393 (46%), Gaps = 51/393 (12%)
Query: 166 GIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLK-EC 224
G +L +E+ F+I L +NG + L + + P ++ + A D L + E
Sbjct: 419 GGSLDFEVAFQIEALFRNGALVPTELLA-----IKPIVEKLAKKSKDQAADALRTFRAEI 473
Query: 225 CYEPSRWLTDQYR--------KYMTSRSKPSSP--AISLDDGLVYVHRVQVTPSRVYFCG 274
+R + + + +S S P I + + V++TP+ V+
Sbjct: 474 QGAGARKSFNDFEDKNVVEEFEVHVRKSAESMPWEKIGISKASFMCYHVKITPTAVHLN- 532
Query: 275 PEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILST 334
SNRV+R + +F+R++F DE D R D T R+
Sbjct: 533 ---EQSNRVIRRYPGYETHFIRVAFTDE-------ADGRARFEYEVD-TMAFTQKRVGKF 581
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTAAEIREWMGNFREIRNV-A 389
L+N I + DR++E L +S S RE++ + A + IR +GNF ++ + A
Sbjct: 582 LKNAIRLCDREYELLGYSQSGFRENACFFVAPFEWKDEIINGEYIRYSLGNFDKVIDCPA 641
Query: 390 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV---- 445
+Y AR+ Q+FSS+ ++ + EI I ++K + +FSDG G +S E A+ V
Sbjct: 642 RYGARMSQAFSSTSQSTMLQESEIRHIMELK---NRRDEMFSDGCGTISRELAKDVWKSM 698
Query: 446 -----ASKCGLKDN---PPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESE--LT 494
S+ G PP AFQIR GG KG+V DP + L LR SM K+E+E L+
Sbjct: 699 LQHLPPSRQGFHHENELPPPAFQIRIGGSKGMVRLDPKLEGRVLCLRPSMTKFEAEHDLS 758
Query: 495 KLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIF 527
A+ Y PCFLNR L+ LL + G+ D++F
Sbjct: 759 LEIARAFVTYSPCFLNRPLVVLLWSGGVEDDVF 791
>gi|116195262|ref|XP_001223443.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
gi|88180142|gb|EAQ87610.1| hypothetical protein CHGG_04229 [Chaetomium globosum CBS 148.51]
Length = 1676
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 103/327 (31%), Positives = 156/327 (47%), Gaps = 42/327 (12%)
Query: 383 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 442
R + A Y+ R Q + S + + +E IPD++ Y+F+DG G V+ + A
Sbjct: 139 RRLSGSASYSPRPRQPWPSRR-------NRVEDIPDIET----ADYIFTDGCGLVAPKLA 187
Query: 443 RKVASKCGL----KDNPPSAFQIRYGGYKGVVAADPT--SSKK--LSLRDSMRKYES-EL 493
+++A + G+ + PS QIRY GYKGVV DPT + KK L +R SM+K+ +
Sbjct: 188 QELARRVGIVFRDRRYTPSVLQIRYRGYKGVVTVDPTMAADKKYLLRMRKSMKKFSGGDD 247
Query: 494 TKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
V+ SK Y +LN ++I LL LG+ + ++KQ E R L DP A L
Sbjct: 248 HSFSVVEHSKPYTYGYLNDEVIILLDALGVDRAVIKRKQEEHFRFLADATQDPRSAFRFL 307
Query: 553 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMM 610
+ N L E ++ P + +++ A K+L R K RI +P R +
Sbjct: 308 CYV----NMPQLAERVLMDSLESVRPRIQALVKNEYA-KMLNKRDEQKCRILLPKSRLLF 362
Query: 611 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 670
G D L G+ V+I+ G G+ + V+V +NPCLHPGD
Sbjct: 363 GVCDAWGVLKEGECAVKITMDG----DGQPAALKGCD----------VLVTRNPCLHPGD 408
Query: 671 VRVLKAVNVPALHHMVDCVVFPQKGMR 697
++ K V L H+VDC+VF +G R
Sbjct: 409 MQKFKVVEKRELAHLVDCIVFSSQGRR 435
>gi|406867650|gb|EKD20688.1| RNA-dependent RNA polymerase 1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 901
Score = 128 bits (321), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 126/478 (26%), Positives = 208/478 (43%), Gaps = 95/478 (19%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKI--HSTDLSPRGS 317
+HR +VT + + GP++ +NR LR ++ D F+R+SF ED + + HS
Sbjct: 371 IHRARVTATSITLSGPQLESNNRTLRKYKEFHDYFMRVSFGAEDGEPLMYHSK------- 423
Query: 318 SATDITRTRIY-TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAA--- 373
++ +Y R G+ IG R F FL F S LRE S W+ A L +
Sbjct: 424 ----VSNYHVYHGRFQEIPDRGVKIGGRVFSFLGFPQSSLRERSYWLVAPFGSLGSLLLD 479
Query: 374 -EIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSD 432
+I +GNF IR+ AK AAR+GQ+FS ++ +++ + + D+K ++ YVFSD
Sbjct: 480 RDITGGLGNFTLIRSPAKCAARIGQAFSDTRSFMTIDPLIVRNMEDIK----RSGYVFSD 535
Query: 433 GIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYES 491
G G + A + G KG+++ D +L LRDSM K++
Sbjct: 536 GCGTI--------------------ALSLLCLGAKGMISLDSRLDGDQLCLRDSMIKFDG 575
Query: 492 ELTKLDVLAWS---KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 548
T D+ + + P ++NR+ I + + E +E + L I P+ A
Sbjct: 576 S-TSNDIEIYDITYRPLPVYMNRKFIKI--------DHGEPATKE-ITSLRMITESPINA 625
Query: 549 QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 608
L+ G+ S L +L+ + RI +P G
Sbjct: 626 SSFLKRQGVGD---------------------SFQFPELILRLLRKLKHEARIPVPRGWH 664
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
+ G +DET +L G++F G + G ++ +S R +V+ + P L P
Sbjct: 665 LHGIMDETGSLKEGEIFC----VGVEE--GVKNVITSER----------LVITRAPALDP 708
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTMLKPRLLWYELNSSH--ALPRFIVV 724
GDVR+ KAV PA +++ G R+ + L E ++ +LPR+I+
Sbjct: 709 GDVRIAKAVMPPAESPLMELGGGDLDGDRFYVIWDDDALPENEFEAAEYPSLPRWILA 766
>gi|170117206|ref|XP_001889791.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
gi|164635257|gb|EDQ99567.1| RNA-directed RNA polymerase [Laccaria bicolor S238N-H82]
Length = 1690
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/374 (29%), Positives = 175/374 (46%), Gaps = 36/374 (9%)
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAK 390
I L+ G + D ++ F S+SQLR S ++ + + +G+F I N+AK
Sbjct: 93 IARLLKAGFFLNDIQYRFYHHSNSQLRGRSCFLRQANNDKELDDRIYQLGDFGRIMNIAK 152
Query: 391 YAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF--ARKVASK 448
A R+G FSS++ + I IPD++ +FSDG G +S A A +
Sbjct: 153 RAKRIGLLFSSAQIDYRLDPKYIADIPDIQ----DGDELFSDGCGLISKRLSIALSKAKR 208
Query: 449 CGLKD--NPPSAFQIRYGGYKGVVAADP---TSSKKLS-LRDSMRKYESELTK-LDVLAW 501
++ P+ FQIRY GYKGV+ P K L+ R SM+K+ + V+
Sbjct: 209 ITFRNVRYTPTVFQIRYLGYKGVLMLHPQLDAEGKHLAQFRKSMKKFTTTTDHTFSVVGH 268
Query: 502 SK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN 560
S+ Y LN +I LLS LG+ +E KQ E + L DP A ++ +S +
Sbjct: 269 SRPYTFGRLNNDIIVLLSCLGVTNEKLLNKQDEYFQWLRNATEDPTAA---VDFLSCIDQ 325
Query: 561 TNILKELLICGYK-PDAEPFLSMMLQTFRASKLLELRTK--TRIFIPNGRSMMGCLDETR 617
+ ++L+ G PD + LQ ++ + R K +R+ I R + G D +
Sbjct: 326 YPLAGKVLLNGINDPDVAKEIRR-LQLGEIARYTDEREKFKSRMIIRESRRLFGVCDPFQ 384
Query: 618 TLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV 677
L G+V ++I +SR + G V++ +NPCLHPGD L+AV
Sbjct: 385 VLKEGEVHIRIM---------------ASRKGPSTPIHGDVLIVRNPCLHPGDCLKLRAV 429
Query: 678 NVPALHHMVDCVVF 691
+ L H+VDC+VF
Sbjct: 430 HNDKLSHLVDCLVF 443
>gi|393244916|gb|EJD52427.1| RdRP-domain-containing protein [Auricularia delicata TFB-10046 SS5]
Length = 813
Score = 126 bits (317), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 116/387 (29%), Positives = 181/387 (46%), Gaps = 50/387 (12%)
Query: 330 RILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI---R 386
R+L +R+G+ G +F FL F+ SQL + F G T + E+ G +
Sbjct: 72 RLLELMRHGLETGGSRFSFLGFTESQLGAGALLFFEEGDGYTIDSMLEYFGELEPVFVKS 131
Query: 387 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 446
KYAARLG SFSS+K + ++ I D + + T V +DG G + AR++
Sbjct: 132 GYGKYAARLGLSFSSTKPVYELSPSDLISIDD-RFALDGT--VTTDGCGLIKDSLARQLC 188
Query: 447 SKCGLKDNPPSAFQIRYGGYKGVVAADP---------TSSKKLSLRDSMRKYES--ELTK 495
G+ N + FQ+R GG KGV+A P S ++ R SM KY ++ +
Sbjct: 189 ILLGIA-NTTAIFQVRIGGIKGVLARYPDDVFERLAQNSVAVIAYRPSMFKYRGGPQIVE 247
Query: 496 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA----QEA 551
L+ ++ ++ LN Q I LL TLG+ E+F++ + ++D I +D A + A
Sbjct: 248 LNKISKTRPDSARLNIQFILLLLTLGVGVEVFQQLLSIQLERIDNIFSDRKSAIAFLENA 307
Query: 552 LELMSPGENTNILKE----LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 607
++ T L + +L G+ +EP L L T R L L+ K +I + +
Sbjct: 308 YDVTLDSNATRSLYQDAFLMLHAGFDL-SEPQLQWSLNTLRTQMLKRLQDKLQIEVQDSA 366
Query: 608 SMMGCLDETRTLNYGQVFVQI--SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
+ G DET +L +V+V + G G+ R+ VVV KNP
Sbjct: 367 MLFGVCDETNSLEEDEVYVNLPERGGGF-----------GGRT---------VVVMKNPA 406
Query: 666 LHPGDVRVLKAVNVPALHHM-VDCVVF 691
PGD+RV KAV+ P+L +C+VF
Sbjct: 407 YAPGDIRVFKAVDRPSLRICPTNCIVF 433
>gi|405974294|gb|EKC38950.1| Putative RNA-dependent RNA polymerase 1 [Crassostrea gigas]
Length = 299
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/243 (36%), Positives = 127/243 (52%), Gaps = 20/243 (8%)
Query: 265 VTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITR 324
+TPSR + R+LR + D F+ + + D+D DK+ + P GS
Sbjct: 32 LTPSRFILLPNKPVHLTRILRLYNNDY--FILLDYRDDDFDKV--CGIHPYGSMKIVQDM 87
Query: 325 TRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 384
R + NG I DR ++FL S+S+LR S W F+S G+TA IR+ G+
Sbjct: 88 KRFFI-------NGFEIHDRHYDFLGCSNSELRNHSFWFFSSYDGITAEFIRQNCGDLSM 140
Query: 385 IRNVAKYAARLGQSFSSSKETLSV-HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 443
R VA Y +++G FS S TL++ E+ DV+ + F+DGIGK+S A
Sbjct: 141 ERCVASYVSKIGLCFSPSLSTLTMEEHQEVRFEEDVR----RNGLCFTDGIGKISRRLAA 196
Query: 444 KVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESELTKLDVLA 500
KVA K L + PS FQI YGG KG++A DP+ + L +R SM+K+ES L+VL
Sbjct: 197 KVAKKMNL-NTVPSVFQICYGGCKGMIALDPSLGENREILVIRHSMKKFESSSKSLEVLQ 255
Query: 501 WSK 503
S+
Sbjct: 256 VSR 258
>gi|330794390|ref|XP_003285262.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
gi|325084804|gb|EGC38224.1| hypothetical protein DICPUDRAFT_149105 [Dictyostelium purpureum]
Length = 2292
Score = 125 bits (315), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 124/476 (26%), Positives = 209/476 (43%), Gaps = 81/476 (17%)
Query: 254 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED------LDKI 307
DD + V V VTP+R+ P + NRV+R F D FL +F DE+ L+K
Sbjct: 1074 DDLFIPVKEVFVTPTRIVLVPPRLTSGNRVIRSFGNDPSRFLLYNFTDENFEPFLGLNKS 1133
Query: 308 HSTDLSPRGSSATDITRTRIYTRILSTLRNGILI---GDRKFEFLAFSSSQLRESSAWMF 364
H L + L+NG+ I + ++ S SQ ++ SAW +
Sbjct: 1134 HPLILDGQSKH----------------LKNGLEIIPLSGEYYRYIGNSQSQSKKYSAWFY 1177
Query: 365 ASRYGLTAAEIREWMGNFREI--RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIE 422
+ +W G I R V + L FSS+ +++ + + + I DV
Sbjct: 1178 LEDPKYKIEDAFKWSGIDTSIPMRKVYRQFCLL---FSSTSKSIVIDKSKYKTIDDVYDS 1234
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPS-AFQIRYGGYKGVVAADPTSSKKLS 481
G + F++G G + + K +P + A+QIR GG KGVV + T S L
Sbjct: 1235 TGA--HNFTEGCGIIGKYLVDAINKKMNY--HPCTCAYQIRIGGSKGVVVLNDTDSISLG 1290
Query: 482 -------------LRDSMRKY-------ESELTKLDVLAWSKYQPCFLNRQLISLLSTLG 521
+R+SM K+ E+ T L++++ S C LNRQ I+LL G
Sbjct: 1291 NGKSIPMDPTCIYIRESMTKFMKDPSDDETHRT-LEIISVSTTSRCKLNRQAINLLLNAG 1349
Query: 522 IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL--ICGYKPDAEPF 579
++ + LD L + A L+ G + ++L E I Y+ + +
Sbjct: 1350 T-------EESSILSFLDKSLN-----ENAQTLVDIGLSKDLLNEFYPNISEYELFNDYY 1397
Query: 580 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGE 639
+ ++ +KLL ++ K I + + R+++G D + L QV+++++
Sbjct: 1398 IRTIVLKHFKTKLLRIQDKCHIEVEDSRNVLGVTDFSGKLGPNQVYLEVA-----DFDDN 1452
Query: 640 SSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
+++ S ++ G V V KNPC HPGD+R+L+AV++P LH + + F G
Sbjct: 1453 NNIIRSK------VITGRVAVLKNPCHHPGDIRILEAVDIPLLHGKRNILFFSING 1502
>gi|395327643|gb|EJF60041.1| RdRP-domain-containing protein [Dichomitus squalens LYAD-421 SS1]
Length = 734
Score = 125 bits (314), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 116/390 (29%), Positives = 181/390 (46%), Gaps = 57/390 (14%)
Query: 338 GILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI---RNVAKYAAR 394
GI + FL ++ SQ++ F G T + E G+ + KYAAR
Sbjct: 68 GIEHNGTVYRFLGYTESQVKAGKLMFFHEGEGWTVERMLESFGDLPGVYLKSGYGKYAAR 127
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDN 454
LG SFSS+ ++L + ++ IPD+ G + SDG G + FA A C +
Sbjct: 128 LGLSFSSTVQSLDIPLECAIEIPDLTAPDGS---LHSDGCGMIRDSFA---AQLCARHNL 181
Query: 455 PP--SAFQIRYGGYKGVVAADP---------TSSKK------LSLRDSMRKYESELTKLD 497
PP + FQ+R GG KG++ P T S+ ++ R SM KY T L+
Sbjct: 182 PPDTTVFQVRRGGIKGLLVRYPDNEFDVRCRTHSRTRGGHYMIAYRPSMFKYAGGPTCLE 241
Query: 498 VLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLD---AILTDPLKAQEAL- 552
+ S LN Q ++LL TLG+ IF QR + QLD +ILTD KA + +
Sbjct: 242 LNNHNSPSASARLNVQFMALLLTLGVPFAIF---QRLVLDQLDLIGSILTDREKALQYVK 298
Query: 553 -ELMSPGENTNILKEL--LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
EL + E+ + + L ++ + +EP++ L+TF+ + + LR K + IP+ +
Sbjct: 299 GELDAAAED-DFAQGLYAMLLARQDLSEPYVRHKLETFQRKQYITLRNKMSLRIPDSAYL 357
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 669
G +DE L +V V + +R +V+ V+V +NP +PG
Sbjct: 358 FGVVDEAGVLAPNEVHVNLP------------------NRSGVLVRD-VIVGRNPSYYPG 398
Query: 670 DVRVLKAVNVPALHHMVDCVVFPQKGMRYI 699
D R L+AV+ P+L H +C+VF I
Sbjct: 399 DFRKLRAVDHPSLRHHRNCIVFSSNAAHSI 428
>gi|389743114|gb|EIM84299.1| RdRP-domain-containing protein [Stereum hirsutum FP-91666 SS1]
Length = 1120
Score = 125 bits (314), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 108/388 (27%), Positives = 178/388 (45%), Gaps = 44/388 (11%)
Query: 324 RTRIYTRILS-TLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW--MG 380
R+R +I+ + GI ++ FL ++ SQL+ + MF T +R + +
Sbjct: 82 RSRDIPKIMEHVVHEGIQQDGHRYTFLGYTESQLKATQFMMFEGDKAATQKLLRTFGKLD 141
Query: 381 NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAE 440
+ KYAARLG SFSS+ L + IPD+ + + + SDG G +
Sbjct: 142 AVYQKSGYGKYAARLGLSFSSTAVGLDAPHSRVTEIPDL---VARDGTLMSDGCGVIRDS 198
Query: 441 FARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS---------SKKLSLRDSMRKYES 491
+ + G++ + QIR+ G+KG++ P + +++R SM+KY+
Sbjct: 199 VLAIICANRGIRRDT-HCIQIRWNGHKGMLVGYPDAFCTDVLHMGENWIAVRPSMKKYDG 257
Query: 492 ELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
LT L++ A S LN+ I LL T GI + E + +LD +TD KA E
Sbjct: 258 RLTSLEINAVSHPAGSARLNKMYILLLLTAGIPAATIHELLNEQLEKLDLFMTDRDKAIE 317
Query: 551 ALE------LMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
LE L + GE N L E L+ + +EP++ ++ ++ + LR K I +
Sbjct: 318 ILEGTDSAQLDADGEGFNQELFEGLLASHDL-SEPYVKWLMLKYQKLRYRRLREKICIDV 376
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
+ G +DE+RTL +V++ + + ++ G VVV +
Sbjct: 377 KLSWLLFGIVDESRTLKPDEVYIHMP-------------------HRDGVIIGWVVVCRT 417
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVF 691
P PGD+RV KAV+ P L H +C+VF
Sbjct: 418 PAYAPGDMRVFKAVSKPELLHHTNCIVF 445
>gi|409046075|gb|EKM55555.1| hypothetical protein PHACADRAFT_161565 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1108
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 135/484 (27%), Positives = 215/484 (44%), Gaps = 85/484 (17%)
Query: 261 HRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT 320
+ +VTPSR+ GP NRV+R + NFLR+SF+DE+ + R
Sbjct: 324 YHAKVTPSRLLLEGPFPERCNRVVRKYAGHTSNFLRVSFMDENRLQYRFD----RDVDGY 379
Query: 321 DITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF--------ASRYGLTA 372
D R R T + G+ I R F+FLA+S S L+ S W + +T
Sbjct: 380 DFIRKRFGTLLF----EGLWIAGRHFKFLAYSQSALKNHSVWFVRDFTAHENGTEVHVTV 435
Query: 373 AEIREWMGNFREI-------RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK 425
I +G FR + R A+Y AR+ Q+F++++ + V ++E+ + D+ G
Sbjct: 436 DSIIAGLGIFRNVPQDLELMRCPARYGARVAQAFTTTEAAVEVEVEEVFPVEDMMDPNGY 495
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKD--------NPPSAFQIRYGGYKGVVAADPT-S 476
F+DGIG VS E A + K P AFQIR+ G+KG+++ D S
Sbjct: 496 RS--FTDGIGLVSQELAADIWGALQEKSVRHRRYGRCMPRAFQIRFQGFKGMLSVDHNLS 553
Query: 477 SKKLSLRDSMRKYES-ELTKLDVL-AWSKYQPCFLNRQLISLLSTL------GIWDEIFE 528
+ + LR SM+K+E+ E ++V A++K +L+R L LL L GI+ + +
Sbjct: 554 GRAVCLRLSMKKFEAPESMTIEVASAFNKPGRLYLSRPLTMLLEGLKVRGGFGIFKTLQD 613
Query: 529 ---KKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQ 585
K +EA R T EA L + + ++I +L G + +PFL L+
Sbjct: 614 AVIKDTKEATRSFRQAAT----LWEAYGLGTAFKLSSIFLDLAKFGSEAIEDPFLLQCLK 669
Query: 586 TFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSS 645
L +L+ RI +P G S++G D L G++F ++ + +SS
Sbjct: 670 FGIYHILRDLKYHARIPVPKGYSLVGVADIHGYLKEGEIFACVAQS-----------WSS 718
Query: 646 SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD------CVVFPQKGMRYI 699
+ +HPGDV+V A+ P + D VVF +G R +
Sbjct: 719 T-------------------IHPGDVQVATAIGRPPPGTVFDEEPLTNTVVFSTRGTRPL 759
Query: 700 LTML 703
+ L
Sbjct: 760 ASCL 763
>gi|443927204|gb|ELU45719.1| RNA-directed RNA polymerase [Rhizoctonia solani AG-1 IA]
Length = 1713
Score = 123 bits (308), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 112/402 (27%), Positives = 183/402 (45%), Gaps = 58/402 (14%)
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAK 390
I L G+ I +++ F S+SQLR S W+ A+ E + + +I N+AK
Sbjct: 88 IQRALTKGLFINGQQYRFYHHSNSQLRSRSCWLRAASSDEELDRRIEKLCDVSKINNIAK 147
Query: 391 YAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCG 450
A R+G FS ++ ++ + IPD+ I + +FSDG G +S F + +A K
Sbjct: 148 RAKRIGLLFSGAEIDWDLNPALTKDIPDITI----AEELFSDGCGLISRRFMQLLAKKKK 203
Query: 451 LKDN----PPSAFQIRYGG-----------YKGVVAADP----TSSKKLSLRDSMRKYES 491
+ PS QIR +GV+A P + + RDSMRK ++
Sbjct: 204 IVHRGYRYTPSVIQIRAVCSFVSHNVTILIIQGVLAIHPQLDQAAQHHVHFRDSMRKLKT 263
Query: 492 EL-TKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 549
V+ +SK YQ LN +I LLS LGI +E+ + KQ + +++ D
Sbjct: 264 GADNTFSVVDYSKPYQFARLNNDIIVLLSALGITNEMLKTKQDAYFKWIESANKD---MS 320
Query: 550 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL---------RTKTR 600
A+ +S ++ + + + G D E + + R +++ E+ + ++R
Sbjct: 321 SAMNFLSALGKDDLAERVFMDGL--DEEQVQAQI----RNAQVEEVNAFQKPETGKDRSR 374
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
IF+ R + G D L G+V V+I G ++L + ++V
Sbjct: 375 IFLLQSRFLFGVCDPYGLLEEGEVHVRI----MEPRKGATTLSNID-----------LMV 419
Query: 661 AKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
+NPCLHPGD+ L+AV+ L H+VDC+VF KG R M
Sbjct: 420 VRNPCLHPGDILKLRAVHHTGLDHLVDCIVFSGKGKRAAPAM 461
>gi|226294787|gb|EEH50207.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 615
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/292 (31%), Positives = 140/292 (47%), Gaps = 37/292 (12%)
Query: 166 GIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECC 225
G LPY ++F++ LV NG ++ P+ +F V + + ALDKL +
Sbjct: 315 GGDLPYRVMFQLQKLVWNGAIS-PVNAISFAYRVGKELVDADLDVVVQALDKL---ERDI 370
Query: 226 YEPS--------------RWLTDQYRKYMTSRS-KPSSPAISLDDGLVYVHRVQVTPSRV 270
PS + + + R+ S+ I L++ + +HR QVTP +
Sbjct: 371 QWPSPDVQASEVDVVALMKLFANALEIVLRERALSRSNRQIHLNN--ILIHRAQVTPCGI 428
Query: 271 YFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTR 330
Y GP++ NRVLR + ++D+FLR+ F+DE D I R S + +R
Sbjct: 429 YLYGPQLETKNRVLRIYEANVDHFLRVEFVDESGDPI-------RYDSRASVDAI-FQSR 480
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM---FASRYGL-TAAEIREWMGNFREIR 386
L+ GI I RKFEFL FS S LR + W F S L A I + +G F I
Sbjct: 481 FKGVLKEGITIAGRKFEFLGFSHSSLRSQTCWFVAPFVSGGTLYNATVIIQNLGRFDHIH 540
Query: 387 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVS 438
+ AK AAR+GQ+FS + ++ + D + + DV+ + VFSDG+G +S
Sbjct: 541 SPAKQAARIGQTFSDTLTSIPISFDMLSVGEDVE----RNGRVFSDGVGTIS 588
>gi|409046078|gb|EKM55558.1| hypothetical protein PHACADRAFT_173705 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1167
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 121/469 (25%), Positives = 203/469 (43%), Gaps = 57/469 (12%)
Query: 261 HRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT 320
+ V +TPSR GP +NRV+R + NFLR+ F DE+ R
Sbjct: 379 YHVTITPSRFILSGPFPERNNRVMRKYASHTSNFLRVDFADEE-------GFQYRMDRVL 431
Query: 321 DITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA----SRYGLTAAEIR 376
D +R + R L G ++ DR F+FL +S S L++ + W S +T I
Sbjct: 432 D-SRRFVRERFGRFLSQGFVLVDRHFDFLQWSQSGLKQHAVWFVKEFQMSHDTVTVDSII 490
Query: 377 EWMGNF-------REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYV 429
+G F R + A+ AR +F+++ + V +EI + PD IE K
Sbjct: 491 ADLGTFHDTPYDPRLMYCPARLGARRALAFTTTDAAVEVEAEEIVVEPD--IEDANGKRS 548
Query: 430 FSDGIGKVSAEFA-------RKVASKCGLKDNPPSAFQIRYGGYKGV-VAADPTSSKKLS 481
F+DG G +S E RK + + P Q R+ G KG + + L
Sbjct: 549 FTDGAGLISEELMTAVWEELRKKSRRYRRAHMMPDVIQHRFQGSKGTSTVSRRLPGRVLV 608
Query: 482 LRDSMRKYESELTKL--DVLAWSKYQPCFLNRQLISLLSTLGIWD--EIFEKKQREAVRQ 537
+R SM K+E+ +++ A+++ P LNR LI LL L I EI +K Q +++
Sbjct: 609 IRPSMIKFEATGSRMVEVAAAFTRAGPFRLNRPLIMLLEGLRIRGGYEILKKLQDAVIQE 668
Query: 538 LDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 594
A LE G +++ L +PF +L L +
Sbjct: 669 TKDAANSLSTAARLLEPHGLGTGFKVSSVFANLARLELDSMPDPFFHRVLNVAIYHILRD 728
Query: 595 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 654
L+ RI +P G +++G D L G+VF + ++S + + +
Sbjct: 729 LKYHARIPVPGGYTLVGVADPYGYLGEGEVFACV---------------TTSTNAEPIFL 773
Query: 655 QGLVVVAKNPCLHPGDVRVLKAVNVPA------LHHMVDCVVFPQKGMR 697
+G ++++++P +HPGDV++++A+ P H +++ +VF G R
Sbjct: 774 EGEMMISRSPTVHPGDVQIVRAIGRPPKGSEFDKHPIMNALVFATIGKR 822
>gi|170579664|ref|XP_001894930.1| RNA-directed RNA polymerase 1 [Brugia malayi]
gi|158598304|gb|EDP36223.1| RNA-directed RNA polymerase 1, putative [Brugia malayi]
Length = 312
Score = 118 bits (295), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 119/230 (51%), Gaps = 24/230 (10%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
+G V +V +TP+R+ PE+ + NRVLR F +D + LRI F D+D T L
Sbjct: 72 EGYQRVRKVIITPTRIILVVPELLMGNRVLRTFDKDGNGALRIQFRDDD-----GTPLR- 125
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 374
+ I T +TL GI IGDR F +L S+SQ+R++ + + G A +
Sbjct: 126 ----VNTVGLFLIQTTTFNTLSRGIYIGDRHFVYLGSSNSQMRDNGCYFYDDGKGGQAHK 181
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSV-----HMDEIEIIPDVKIEIGKTKYV 429
IRE +G F N+ K +R+GQ F+ +K + + +II + + Y+
Sbjct: 182 IREQLGKFDSC-NIPKMMSRMGQCFTQAKRCKVILKRQKYNKTYDIIGGR--DTNQASYI 238
Query: 430 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 479
FSDG+GKVS EFA K+A GL IR+ G KGV++ DP+ ++
Sbjct: 239 FSDGVGKVSKEFAEKIAFDIGL------GTSIRHRGIKGVLSIDPSLDQR 282
>gi|119370384|gb|ABL68089.1| putative RNA-directed RNA polymerase 2 [Nicotiana attenuata]
Length = 108
Score = 117 bits (294), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/107 (55%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 451
AAR+GQ FS+S +T+ V +EI+PD+++ Y FSDGIGK+S FA +VA KCGL
Sbjct: 1 AARMGQLFSTSFQTMEVQSPHVEILPDIEVTSDGVSYCFSDGIGKISQAFASQVAQKCGL 60
Query: 452 KDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDV 498
PSAFQIRYGGYKGV+A D S +KLSLR SM K+ES+ L++
Sbjct: 61 -SYTPSAFQIRYGGYKGVIAVDRNSFRKLSLRGSMLKFESKNRMLNI 106
>gi|259482364|tpe|CBF76776.1| TPA: RNA-directed RNA polymerase (Sad-1), putative (AFU_orthologue;
AFUA_3G06790) [Aspergillus nidulans FGSC A4]
Length = 869
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 153/337 (45%), Gaps = 73/337 (21%)
Query: 278 NVSNRVLRHFRRDIDNFLRISFID-EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR 336
++SN V+R + DNFLR+ F D + + +IH+T D T + TRI L
Sbjct: 247 DISNCVIRRYANLADNFLRVRFTDAKHIGRIHAT---------VDNTMDEVLTRIKRALA 297
Query: 337 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLG 396
NGI IG ++EFLAF +S F R ++ A
Sbjct: 298 NGITIGSTRYEFLAFGNSS------------------------SCFSTTRAISGCTA--- 330
Query: 397 QSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---D 453
H+ +I+ +I Y+FSDG+G++S A+ V S+ +K
Sbjct: 331 ------------HVKKID-------DIEGNGYIFSDGVGRISKFLAQIVKSELKIKTPTK 371
Query: 454 NPPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 512
PPSA+Q R G KG++ P + +++ +R S K+ + L+++ WS++ LNRQ
Sbjct: 372 EPPSAYQFRLVGCKGMLIVFPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQ 431
Query: 513 LISLLSTLGIWDEIFEKKQREAVRQLD-AILTDPLKAQEALELMSP------------GE 559
LI +LSTLGI D++F K + +R LD A+ +DP A + + P GE
Sbjct: 432 LILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHLLRKYVDPNQVTLTIYLPKNGE 491
Query: 560 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596
I++ + I P P +++ A L L+
Sbjct: 492 KYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHLK 528
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
I++G+ ++A+NP LHPG +RV++AVN P LHH+ D VV P+ G R I +M
Sbjct: 495 IIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASM 544
>gi|67537240|ref|XP_662394.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
gi|40741170|gb|EAA60360.1| hypothetical protein AN4790.2 [Aspergillus nidulans FGSC A4]
Length = 854
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 153/337 (45%), Gaps = 73/337 (21%)
Query: 278 NVSNRVLRHFRRDIDNFLRISFID-EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR 336
++SN V+R + DNFLR+ F D + + +IH+T D T + TRI L
Sbjct: 232 DISNCVIRRYANLADNFLRVRFTDAKHIGRIHAT---------VDNTMDEVLTRIKRALA 282
Query: 337 NGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLG 396
NGI IG ++EFLAF +S F R ++ A
Sbjct: 283 NGITIGSTRYEFLAFGNSS------------------------SCFSTTRAISGCTA--- 315
Query: 397 QSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK---D 453
H+ +I+ +I Y+FSDG+G++S A+ V S+ +K
Sbjct: 316 ------------HVKKID-------DIEGNGYIFSDGVGRISKFLAQIVKSELKIKTPTK 356
Query: 454 NPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 512
PPSA+Q R G KG++ P + +++ +R S K+ + L+++ WS++ LNRQ
Sbjct: 357 EPPSAYQFRLVGCKGMLIVFPQARPQEVHIRKSQFKFAALSQGLEIIRWSQFTVASLNRQ 416
Query: 513 LISLLSTLGIWDEIFEKKQREAVRQLD-AILTDPLKAQEALELMSP------------GE 559
LI +LSTLGI D++F K + +R LD A+ +DP A + + P GE
Sbjct: 417 LILVLSTLGITDKVFHLKLKTMLRNLDEAMESDPKAAHLLRKYVDPNQVTLTIYLPKNGE 476
Query: 560 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596
I++ + I P P +++ A L L+
Sbjct: 477 KYEIIEGICILARNPSLHPGGIRVVRAVNAPGLHHLK 513
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 38/50 (76%)
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
I++G+ ++A+NP LHPG +RV++AVN P LHH+ D VV P+ G R I +M
Sbjct: 480 IIEGICILARNPSLHPGGIRVVRAVNAPGLHHLKDIVVLPRTGDRDIASM 529
>gi|302678369|ref|XP_003028867.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
gi|300102556|gb|EFI93964.1| hypothetical protein SCHCODRAFT_236896 [Schizophyllum commune H4-8]
Length = 711
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/370 (26%), Positives = 162/370 (43%), Gaps = 66/370 (17%)
Query: 345 KFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKE 404
K+ +L F+ SQL++ + + T + +GN + I +
Sbjct: 85 KYSWLGFTESQLKDGTFLLLREDEHWTVDRFLDALGNVKSIPD----------------- 127
Query: 405 TLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYG 464
+ + IPD + G +F+DG G + A +V S + ++ + FQIR G
Sbjct: 128 ------ELVATIPDFQATDGT---LFTDGCGLIRDSCAAEVCSALEIPEDT-TVFQIRRG 177
Query: 465 GYKGVVAADPT-------------SSKKLSLRDSMRKYESELTKLDVLAWSKY-QPCFLN 510
G KG++ P K++LR SMRKY T L++ + ++ + LN
Sbjct: 178 GVKGLLVRYPDVVFDRICRDAGRRGPMKIALRPSMRKYPGGPTVLEIHSVARRPRSARLN 237
Query: 511 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI---LKEL 567
R I LL TLG+ E FE R + +D I+T +A +ALE + L +L
Sbjct: 238 RHFIILLLTLGVRLEAFESLLRANLEFIDLIMTSRQRALDALEAELDADGAGFDQELHDL 297
Query: 568 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 627
L+ G++ +EP + +L+ + L LR K I + N + G DE L G+V++
Sbjct: 298 LLAGFQL-SEPHVRCLLERLQKRSLDVLRKKLNIRVKNSFYLFGVCDELGVLREGEVYIN 356
Query: 628 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 687
++G + G V+V +NP +RVL+AVN P L H+ +
Sbjct: 357 VAGD---------------------VKLGTVLVGRNPAYSTSVLRVLQAVNRPGLSHLRN 395
Query: 688 CVVFPQKGMR 697
C+VF G R
Sbjct: 396 CIVFASGGAR 405
>gi|397621217|gb|EJK66181.1| hypothetical protein THAOC_12913, partial [Thalassiosira oceanica]
Length = 906
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 167/369 (45%), Gaps = 41/369 (11%)
Query: 254 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHF----RRDIDNFLRISFIDEDLDKIHS 309
DD V + RV ++P R+ + +SNR +R F + F+R++ DE+ DK+
Sbjct: 557 DDFCVSLPRVLLSPLRLSITAFQSEMSNRFVRLFINRHKFSESAFVRLTIGDENGDKLFG 616
Query: 310 TDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG 369
+LS ++ RI + G+ +G + + FLA+SSSQL+E S W+ + G
Sbjct: 617 GELS-----------RQVEERIRQLILQGVRLGGKTYHFLAYSSSQLKEQSMWLVCAERG 665
Query: 370 LTAAEIREWMGNFREIRNVAKYAARLGQSFSSS----------KETLSVHMDEIEIIPDV 419
+ +R+ MG+F + +KYAAR+GQ FS++ + L V D +PD+
Sbjct: 666 WSVDSMRDLMGDFSMCESPSKYAARVGQCFSTTVTVSTRSHRRNDGLRVKDD----LPDI 721
Query: 420 KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPP------SAFQIRYGGYKGVVAAD 473
I V SDG G + E K S L P SA Q R GG KGV+
Sbjct: 722 PSSI--ESLVHSDGCGLIRHEVLLK--SVLPLVPYAPRFKSDISAIQFRCGGAKGVLVGW 777
Query: 474 PTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQRE 533
++ + D + ++ +Q RQ+I L + LGI E+F Q E
Sbjct: 778 DFNTLGIQNYDVCLRPSQGVSICMRGIGGTHQLGIDWRQVILLGTHLGISGEVFLSLQDE 837
Query: 534 AVRQLDAILTDPLKAQEALELMS--PGENTNILKELLICGYKPDAEPFLSMMLQTFRASK 591
+ L+ +L D A + + + E L ++L G KP +PFL L R+
Sbjct: 838 MMSSLNRMLVDARFAAQYVPFIGGIDAEIVTSLCDMLASGLKPSRDPFLYSCLHATRSHH 897
Query: 592 LLELRTKTR 600
L+ LR K R
Sbjct: 898 LMGLRKKAR 906
>gi|297848118|ref|XP_002891940.1| hypothetical protein ARALYDRAFT_892768 [Arabidopsis lyrata subsp.
lyrata]
gi|297337782|gb|EFH68199.1| hypothetical protein ARALYDRAFT_892768 [Arabidopsis lyrata subsp.
lyrata]
Length = 117
Score = 116 bits (290), Expect = 5e-23, Method: Composition-based stats.
Identities = 57/118 (48%), Positives = 75/118 (63%), Gaps = 5/118 (4%)
Query: 157 LVPIVGPPDGIALPYEILFKINLLVQNGCVAGPLLDSNFYRLVDPYRAPVSISCIEHALD 216
LVP+V PP G LP+EILFK+N LVQN CV GP L FY LV + + I+ AL
Sbjct: 5 LVPVVDPPSGFDLPFEILFKVNALVQNACVPGPALVPKFYELVATHER----NFIDEALA 60
Query: 217 KLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCG 274
KL L ECCY + WL +Y + +++P SL+ +VY+H+V+VTP+RVYFCG
Sbjct: 61 KLRCLNECCYTLASWLKQEYTDW-GKKTQPPRSKESLEGVVVYIHQVKVTPTRVYFCG 117
>gi|401412157|ref|XP_003885526.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
gi|325119945|emb|CBZ55498.1| hypothetical protein NCLIV_059230 [Neospora caninum Liverpool]
Length = 1367
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 127/527 (24%), Positives = 215/527 (40%), Gaps = 131/527 (24%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFL--RISFIDEDLDKIHSTDLS 313
G+ +H + TP +V G + +RV R + R++ L R++F++ED
Sbjct: 524 GIPVLH-LLATPLKVLVRGIYCELGSRVTRQYAREVATGLLVRVAFVEEDG--------R 574
Query: 314 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF--ASRYGLT 371
P SS + R+ + G+ +G +++F A S SQLRE WM + L+
Sbjct: 575 PMSSSLHRAQDESLQERMRLMMVGGLSVGHERYKFFAASLSQLREGCCWMIRVSGDTRLS 634
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK----------- 420
A I +G F + RLG FSS+ + + +E+ +IPDV
Sbjct: 635 AEAILSRLGVFDSSISPGVLTKRLGVCFSSTLPAIDIRDEEMLLIPDVTSSAAAPTAREE 694
Query: 421 ---------------IEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
+ + ++VF+DG G +S + R++ ++ SAFQIR GG
Sbjct: 695 AAENEGRQARARPIPLAVDSPEFVFTDGSGAISLDLWRRIVARLPALHTS-SAFQIRLGG 753
Query: 466 YKGVVAADPT-----------SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 514
KG++ P S K + + SM+K+ S L+V +S+ P +LNRQ+I
Sbjct: 754 IKGMLVLHPAFPRPVPHHPAESLKHILVSQSMQKFHSSSRCLEVNDFSRRFPYYLNRQVI 813
Query: 515 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKP 574
LL TLG+ +FE+ Q+ ++ L + T A + L ++ +N + +C
Sbjct: 814 LLLDTLGVGFPVFERLQKRMLQFLRDVDTR-AGAIKFLSTLAIDQNLGMSSFAQVC---- 868
Query: 575 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG------------ 622
+ LR + G ++ G D T +L Y
Sbjct: 869 ---------------LDFIALRGR-------GANLFGVPDFTHSLAYDHGWRSSPSARVF 906
Query: 623 ----QVFVQIS---------------GAGYRQLHGESSLFSSSRSRQRF----------- 652
+VFV ++ G L E+ + R+R+R
Sbjct: 907 AGLPEVFVHVTRSPFSDEGMARHVAVATGKSWLSAEADA-QAERARRRLGRFPGGSVAAF 965
Query: 653 ---IVQGLVVVAKNPCLHPGDVRVLKAV-------NVPALHHMVDCV 689
++QG+V V +NPCL PGD+++ AV + P L + C+
Sbjct: 966 GSEVIQGVVAVCRNPCLFPGDIQLCFAVAHGDLPDDSPLLRPLTGCL 1012
>gi|449467491|ref|XP_004151456.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Cucumis sativus]
Length = 401
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 62/89 (69%), Gaps = 13/89 (14%)
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
MMGCLDET+TL YGQVFV S G S F+V+G +VVAKNPCLHP
Sbjct: 1 MMGCLDETQTLEYGQVFVHCSIPG-------------RSSEGNFVVKGKIVVAKNPCLHP 47
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GDVRVL AV+V ALHHMVDCVVFPQKG R
Sbjct: 48 GDVRVLDAVDVKALHHMVDCVVFPQKGKR 76
>gi|402468935|gb|EJW04011.1| hypothetical protein EDEG_01705 [Edhazardia aedis USNM 41457]
Length = 1964
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 76/203 (37%), Positives = 106/203 (52%), Gaps = 43/203 (21%)
Query: 372 AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFS 431
A IR+W+G F I+N+ KYA RLGQ+ SS+ T + +D + I D K G Y F+
Sbjct: 1259 ADYIRQWLGTFSTIKNIGKYAIRLGQALSSTIGT--IEIDNLVCIDD-KFFNG---YCFT 1312
Query: 432 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVA-------------------- 471
DGIG++ A+KV G+ N PSAFQIR GGYKGVV+
Sbjct: 1313 DGIGRIDYSTAKKVCECLGII-NIPSAFQIRIGGYKGVVSLYKLKNNNEEKKLKNIIYSS 1371
Query: 472 ----------ADPTS------SKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 515
D S S L +R+SM+K+ES L+V+A+S+ PC+LNRQ+I
Sbjct: 1372 NTNTNLNSTNIDTNSNISLVQSNSLYVRNSMKKFESTHRTLEVVAFSQNIPCYLNRQIIL 1431
Query: 516 LLSTLGIWDEIFEKKQREAVRQL 538
+L LGI D I + Q + ++
Sbjct: 1432 ILCALGINDNIIIEMQDNYIEKI 1454
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 14/127 (11%)
Query: 238 KYMTSRSKPSSPAISL-DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 296
K M + + S+ IS + + VTP + + P + NRVLR F D F+R
Sbjct: 1070 KNMHTNTNKSASNISFWATQNISTRSIIVTPLQQIYTYPTKTLGNRVLRTFNADF--FIR 1127
Query: 297 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 356
+SF DE+L + D + I+ +I ++ G LIG+RK+ FLA S+SQL
Sbjct: 1128 VSFKDENLTSVRKYD-----------SNKFIFEKIRKIMKEGFLIGNRKYFFLAMSASQL 1176
Query: 357 RESSAWM 363
+ SAW
Sbjct: 1177 KTHSAWF 1183
>gi|440298585|gb|ELP91216.1| RNA-dependent RNA polymerase, putative [Entamoeba invadens IP1]
Length = 1008
Score = 110 bits (274), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 130/483 (26%), Positives = 198/483 (40%), Gaps = 84/483 (17%)
Query: 252 SLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDID-NFLRISFIDEDLDKIHST 310
S +D +V V + R+ F N SN +L F + LR+ F++ + +K+H
Sbjct: 223 SREDDVVLRMEVNSSVVRMSFG---YNESNAILEDFSEEFRVKMLRLKFLNNE-NKMHVL 278
Query: 311 DLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL 370
+ TD+ + S +N R++EF + SQ R + W + +
Sbjct: 279 E-----RVDTDLLAFYLVKGYSSYFQN------RRYEFFLSNPSQSRSGACWFIDNTDDI 327
Query: 371 TAAEIREWMG---NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 427
T +G +I+N R G S S T ++ +I+ I DV E G
Sbjct: 328 TRVAAYNSLGIDLKSAKIKNSGILLMRAGLFGSDSVATAGIYPQQIKRIEDVTNEGG--- 384
Query: 428 YVFSDGIGKVSAEFARKVAS---KCG---LKDNPPSAFQIRYGGYKGVVAADP-TSSKKL 480
Y FSDG+G++S A KV + +CG ++ P+AFQIR+ G KGVV+ D S+ +
Sbjct: 385 YTFSDGVGRISLSLASKVFAEYRRCGENVIRVEEPAAFQIRFAGVKGVVSVDCLDKSENI 444
Query: 481 SLRDSMRKYES---ELTKLDVLAWSKYQPCFLNRQLISLLSTLGI--------WDEIFEK 529
R S K E+ + KL V+ +Y+ +N QL L L I E K
Sbjct: 445 YFRPSQIKIEAFPERVQKLRVVQIPQYRSGRMNEQLALGLEYLEIPIPNFIQCAKEYLRK 504
Query: 530 -----KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMML 584
E VR +P A +M+ G ++ I +E PF+
Sbjct: 505 YFTSIPNDEVVRLFQKNAKNPTVAIALKMVMAAGRDSKIFEE-----------PFVKANS 553
Query: 585 QTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFS 644
R + L E + I N +MG +DET L GQVF+Q+S
Sbjct: 554 LVLRMAMLSEKSDFIKFDIDNSAFLMGVMDETGILEEGQVFIQLS--------------- 598
Query: 645 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV--NV--------PALHHMVDCVVFPQK 694
S F+ ++ K P HPGD +L+ V NV L ++ D +VF K
Sbjct: 599 ---SNSVFVPSSRLLAVKFPATHPGDFLLLRNVCENVLFERKRGYERLAYLKDVIVFSSK 655
Query: 695 GMR 697
G R
Sbjct: 656 GYR 658
>gi|384499712|gb|EIE90203.1| hypothetical protein RO3G_14914 [Rhizopus delemar RA 99-880]
Length = 595
Score = 109 bits (272), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 58/170 (34%), Positives = 95/170 (55%), Gaps = 16/170 (9%)
Query: 535 VRQLDAILTDPLKAQEALELMSPGE--NTNILKELLICGYKPDAEPFLSMMLQTFRASKL 592
+R++D IL P +A L L + E +++ ++ G+ +P++ +L FR + L
Sbjct: 5 LREIDKILARPEEAIRVL-LNNADEAGTAHMMASIIQAGFLERGDPYIKNLLNLFRVNVL 63
Query: 593 LELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF 652
EL+ K +I +P G ++G +DET TL+ G+V++Q+ +S +
Sbjct: 64 KELKKKAKILVPQGAFLLGVMDETGTLDEGEVYIQVWD-------------NSHSGTMKQ 110
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
++ G V +NPC HPGDVRV+ AV+ P L H+V+ VVFP KG R I +M
Sbjct: 111 VITGECAVFRNPCFHPGDVRVVTAVDRPNLSHLVNVVVFPAKGYRDIPSM 160
>gi|290988183|ref|XP_002676801.1| predicted protein [Naegleria gruberi]
gi|284090405|gb|EFC44057.1| predicted protein [Naegleria gruberi]
Length = 1650
Score = 108 bits (271), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 100/389 (25%), Positives = 178/389 (45%), Gaps = 47/389 (12%)
Query: 327 IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWM---GNFR 383
+ +I+ + I +++ + S S LR + F + +E+ E M G +
Sbjct: 295 VKVKIIDVVPASIECCGKEYRPVGGSLSMLRSDYVYFFDTTAMPACSEVDELMQIFGTYD 354
Query: 384 EIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFAR 443
N K +R +F+++KET +++ + VK E+ +DGIGK+S A+
Sbjct: 355 SNLNPFKLVSRHALNFTTTKETCTINKWKC-----VKDELAIDGSEMTDGIGKISQSIAQ 409
Query: 444 KVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS----KKLSLRDSMRKY--ESELTKLD 497
+++++ GL + P+A QIR+ G+KGV++ P + LR+SM K+ + EL K++
Sbjct: 410 QISNQLGLV-SVPTALQIRFLGFKGVLSVLPDEDLGDGMDVILRESMCKFNGKEELNKIE 468
Query: 498 VLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS 556
+++ + +P +LN+Q+I LL+TLGI E F + + L +T P + L+
Sbjct: 469 LVSCTTARKPAYLNKQIILLLTTLGITKETFLSIFLDYFKDLSEKITSPKYFLKVLK--- 525
Query: 557 PGENT-NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 615
EN + L + PD E FL + + ++ +++TK I I M +DE
Sbjct: 526 --ENCMDTLPAIQSLNEMPDDE-FLQYLARYLIYDEIKKVQTKAMIPIEKAVIAMSIVDE 582
Query: 616 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVL 674
+ L +V VQ+ Y I G V + +NPCLHP D++
Sbjct: 583 YKQLKENEVMVQLGDGNY-------------------IEDGTQVFICRNPCLHPSDIQTF 623
Query: 675 KAVNVPALHHMV----DCVVFPQKGMRYI 699
+ L ++FP +G I
Sbjct: 624 TCRDNSLLRSKYRPSNAAIIFPTQGYTSI 652
>gi|290988738|ref|XP_002677050.1| predicted protein [Naegleria gruberi]
gi|284090655|gb|EFC44306.1| predicted protein [Naegleria gruberi]
Length = 553
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 133/495 (26%), Positives = 210/495 (42%), Gaps = 138/495 (27%)
Query: 212 EHALDKLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLV----YVHRVQVTP 267
E ++ L +C Y S+ L YR +T K D+ V + RV+ T
Sbjct: 45 EQFVNAKEELTQCLYHFSQQL---YRHVVTE--KKCHTLFKFDESAVKQTELIRRVKSTN 99
Query: 268 SRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 327
+ F EI+ N+V R++ ID F+R+ F DE R
Sbjct: 100 LKS-FEFAEIDY-NKVFRYY--GIDKFIRVDFEDE-----------------------RD 132
Query: 328 YTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR--------YGLTAAEIREWM 379
T + +TL+ L G + F+ + SSS L E + +G+ A+EI +
Sbjct: 133 STVMQTTLKGFCLYG-QMFKPIGASSSLLSERGVYFTCEEDPMKMMDIFGIYASEIETKI 191
Query: 380 GNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSA 439
AR +F+S+KET+ VH + +I D+ GK + SDGIG +S
Sbjct: 192 -------------ARQCLNFTSTKETIRVH--KYIVIDDINSRDGKG--IVSDGIGMISY 234
Query: 440 EFARKVASKCGLKDNP--------PSAFQIRYGGYKGVVAADP---TSSKKLSLRDSMRK 488
FA+ V C L+D P AFQIR+ G+KG++ P + ++ LR+SM+K
Sbjct: 235 SFAKAVC--CSLRDQSIDGKYVHIPRAFQIRFLGFKGMLTVCPDKIMNGNQIILRESMKK 292
Query: 489 YESE--LTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
+E KL+++ ++ +NRQ+I LLS+L + DE+F Q++A+ +
Sbjct: 293 FEGNPLFNKLEIVEGLNESDTANINRQIIILLSSLQVKDEVFLNAQKKALARNKC----- 347
Query: 546 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN 605
+ D E FRA ++ + KT+ F+ +
Sbjct: 348 ---------------------------RNDEE---------FRA-RIKNAKEKTKFFMKD 370
Query: 606 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
G LDET+ L QV V I+ G R + G V+V +NP
Sbjct: 371 SVIAKGILDETKQLKDNQVIV-ITKNG-RMVPGGKK----------------VIVFRNPG 412
Query: 666 LHPGDVRVLKAVNVP 680
LHP DVR+ + V++P
Sbjct: 413 LHPRDVRIFETVSIP 427
>gi|154273921|ref|XP_001537812.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150415420|gb|EDN10773.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 652
Score = 106 bits (264), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 101/170 (59%), Gaps = 17/170 (10%)
Query: 546 LKAQEALELM----SPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
++ ++A+ L+ P + T IL +++ G++ EPF+S +L+ +R ++ L+ K +I
Sbjct: 2 IQEEQAVHLLQTHVDPNQMTLILADMVRDGFQGSKEPFVSSILELWRTWQIKYLKEKAKI 61
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGES---------SLFSSSRSRQRF 652
I G ++GC+DET+TL + + + S G + ES ++ S +
Sbjct: 62 AIDEGAFLLGCIDETKTL---KGYFRSSRPGQDATYEESVACLPEIFVQVWRHSEGK-YV 117
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
I++G+ ++A+NP LHPGD+RV+KAVN P+LHH+ D VV PQ G R I +M
Sbjct: 118 IIEGVCILARNPSLHPGDIRVVKAVNAPSLHHLRDVVVLPQTGDRDISSM 167
>gi|406693965|gb|EKC97304.1| hypothetical protein A1Q2_08384 [Trichosporon asahii var. asahii
CBS 8904]
Length = 945
Score = 104 bits (260), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 112/457 (24%), Positives = 196/457 (42%), Gaps = 83/457 (18%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTD 311
LD+ V V+ VTP+R+ P + S +R+ D FLR+ FIDE D +++ T
Sbjct: 278 LDENSVVVYHCLVTPTRLVLLPPGVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQVNPTV 337
Query: 312 LSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--RYG 369
L + T R+ + NG+ I R + FLA+ ++ R+ S W A
Sbjct: 338 LEADQMEPAEGT----VARVRRAMMNGLNIAGRHYVFLAYGATSARQQSCWFLAEDPAKN 393
Query: 370 LTAAEIREWMG-NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV-KIEIGKTK 427
LT ++ +G + VA++ +++ I+PD+ + +
Sbjct: 394 LTVESVKRNLGLDLLRDTTVARFVSKMAI-----------------ILPDILHADQQEKG 436
Query: 428 YVFSD-GIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSM 486
Y SD G ++SA V K +++ S+++ R S
Sbjct: 437 YCESDAGRTEISA-----VEDKESMEN----------------------ISEEVYFRQSQ 469
Query: 487 RKYESELTKLDV-LAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
KY + + L +++ L+RQ + +++ LG+ D +FE A+R+ +L
Sbjct: 470 VKYRTGSKTMAYGLNIVEFKRAHLSRQAVVIMNHLGVPDAVFESLFILAMREARGLLKRS 529
Query: 546 LKA---QEALELMSPGENTNI-LKELLICGYKPDAEPFLSMMLQTFRASK---LLELRTK 598
A +E L L+S ++T+ + EL G+K D M+L RA+ L + R
Sbjct: 530 ATAGLLKEDLSLVS--QHTHFPVSELYSFGFKTD-----PMLLDICRATAVRLLSDYRHN 582
Query: 599 TRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLV 658
R+ + +MG DE L+ +VF Q S +V G
Sbjct: 583 ARLQVDQSVKLMGIADELNVLSEHEVFCQYD--------------DPDSSDGPNVVLGAC 628
Query: 659 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
+ ++P LHPGD++++ AV+ P LHH+ + +VF +G
Sbjct: 629 AIMRDPVLHPGDIQLVHAVDRPELHHLRNVIVFSVQG 665
>gi|183233879|ref|XP_651309.2| RNA-directed RNA polymerase [Entamoeba histolytica HM-1:IMSS]
gi|169801365|gb|EAL45936.2| RNA-directed RNA polymerase, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449710750|gb|EMD49768.1| RNA-dependent RNA polymerase, putative [Entamoeba histolytica KU27]
Length = 1026
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 165/383 (43%), Gaps = 54/383 (14%)
Query: 344 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMG---NFREIRNVAKYAARLGQSFS 400
R F+FL + SQ R + W ++ G T + +G +I+N R G S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGIDLKSPKIKNAGILLMRTGLFGS 397
Query: 401 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV------ASKCGLKDN 454
S T+ ++ +I++I D+ E G Y FSDG+G++ A+KV S +K +
Sbjct: 398 DSIATVGIYPQQIKVIDDITNENG---YTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSD 454
Query: 455 PPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYES---ELTKLDVLAWSKYQPCFLN 510
P AFQIR+ G KGV+ D ++ + R S K E+ + KL V+ +++ +N
Sbjct: 455 EPYAFQIRFAGVKGVLTVDRLDMTENIYFRPSQIKIEALPKTIQKLRVIQIPQFRSGRMN 514
Query: 511 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLIC 570
QL L L I F ++ +++ ++ + +E + L N +++ L
Sbjct: 515 EQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPN----REIISLFQRFTNNPVIEVALKI 570
Query: 571 ------GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 624
K EPF+ R S L E + I N +MG +DE+ L G+V
Sbjct: 571 IMASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEV 630
Query: 625 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV------- 677
F+Q++ + + SSR ++V K P HPGD +L V
Sbjct: 631 FIQVTTS--------TVTIPSSR----------LLVVKFPATHPGDFVLLNNVVDKINLE 672
Query: 678 ---NVPALHHMVDCVVFPQKGMR 697
L ++ D +VF KG R
Sbjct: 673 KKKGFERLTYLRDVIVFSSKGNR 695
>gi|238580928|ref|XP_002389446.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
gi|215451719|gb|EEB90376.1| hypothetical protein MPER_11425 [Moniliophthora perniciosa FA553]
Length = 316
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 30/258 (11%)
Query: 254 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRD-IDNFLRISFIDEDLDKIHSTDL 312
DDG+ VQ+TP+ + F GP SNRV+R ++ + NFLR+SF DE ++
Sbjct: 48 DDGIFLCMHVQITPTGMIFDGPIPERSNRVIRQYKSEHHHNFLRVSFNDEGRLQLQFN-- 105
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS----RY 368
R D I R+ R G+ + R F FL +S S L+E + + AS
Sbjct: 106 --REIDGDDF----IKRRVQPFFREGLRVAGRVFYFLGYSQSALKEHAVYFMASFEQDGK 159
Query: 369 GLTAAEIREWMGNFRE-------IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK- 420
+T A + E +G+F + I A+YAAR+ Q F+++ T + + + +PD++
Sbjct: 160 QITTASVIESLGSFADLPFDSKLIYCPARYAARISQGFTATDPTTTEVENIVLDLPDIES 219
Query: 421 IEIGKTKYVFSDGIGKVSAEFARKVASK----CGLKDNPPSAF----QIRYGGYKGVVAA 472
+ K + +DG+G +S EFAR + ++ + P S + QIR+ G KGV++
Sbjct: 220 TDKNGKKQIHTDGVGTMSPEFARSIHAERQSRRRGRRRPLSEYARVLQIRFLGSKGVISV 279
Query: 473 DPT-SSKKLSLRDSMRKY 489
D T S K + LR SM K+
Sbjct: 280 DHTLSGKTVCLRPSMVKF 297
>gi|407036402|gb|EKE38145.1| RNA-directed RNA polymerase, putative [Entamoeba nuttalli P19]
Length = 1026
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 164/383 (42%), Gaps = 54/383 (14%)
Query: 344 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMG---NFREIRNVAKYAARLGQSFS 400
R F+FL + SQ R + W ++ G T + +G +I+N R G S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGVDLKSPKIKNAGILLMRTGLFGS 397
Query: 401 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV------ASKCGLKDN 454
S T+ ++ +I++I D+ E G Y FSDG+G++ A+KV S +K +
Sbjct: 398 DSIATVGIYPQQIKVIDDITNENG---YTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSD 454
Query: 455 PPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYES---ELTKLDVLAWSKYQPCFLN 510
P AFQIR+ G KGV+ D ++ + R S K E+ + KL V+ +++ +N
Sbjct: 455 EPYAFQIRFAGVKGVLTVDRLDMTENIYFRPSQIKIEALPKTIQKLRVIQIPQFRSGRMN 514
Query: 511 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLIC 570
QL L L I F ++ +++ ++ + +E + L N +++ L
Sbjct: 515 EQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPN----REIISLFQRFTNNPVIEVALKI 570
Query: 571 ------GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 624
K EPF+ R S L E + I N +MG +DE+ L G+V
Sbjct: 571 IMASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEV 630
Query: 625 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAV------- 677
F+Q++ + SSR ++V K P HPGD +L V
Sbjct: 631 FIQVTTP--------TVTIPSSR----------LLVVKFPATHPGDFVLLNNVVDKINSE 672
Query: 678 ---NVPALHHMVDCVVFPQKGMR 697
L ++ D +VF KG R
Sbjct: 673 KKKGFERLTYLRDVIVFSSKGNR 695
>gi|340505285|gb|EGR31631.1| RNA-dependent rna polymerase, putative [Ichthyophthirius
multifiliis]
Length = 592
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 122/262 (46%), Gaps = 38/262 (14%)
Query: 456 PSAFQIRYGGYKGVVAADPTSSKK-LSLRDSMRKY----ESELTKLDVLAWSKYQPCFLN 510
P AF++ G KGV+ K + LR+SM+K+ E + +D+L +KY+ +LN
Sbjct: 124 PHAFKLDLLGSKGVLMQMKFIEKNTIILRNSMKKFDVLNEGDKLYIDILDMNKYRNGYLN 183
Query: 511 RQLISLLSTLGIWDEIFEKKQREAVRQL------DAILTDPLKAQEALELMSPGEN---- 560
RQ+I LL +LGI D+IF Q E ++ L DA + L+
Sbjct: 184 RQVIILLKSLGIQDKIFRDLQNEFLQMLEKEGFKDANFYNLFNVDFEENLVEKNIEKLDR 243
Query: 561 -TNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 619
T +LK++ +PF+ +L + + L+ K I++ ++G LDE L
Sbjct: 244 ITVLLKKMYDEQLYRKKDPFIDGVLNSLKYRGYYILKKKCNIYVEKSARLLGILDEFNLL 303
Query: 620 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 679
QV+ S G LF ++G V+V KNPCLHPGD+R+L AV+
Sbjct: 304 EENQVYANYSKDG--------ELFQE--------IEGKVIVVKNPCLHPGDIRILNAVST 347
Query: 680 PA------LHHMVDCVVFPQKG 695
L + ++FP+KG
Sbjct: 348 KNDKKYNFLKEYKNVLIFPKKG 369
>gi|167375406|ref|XP_001733628.1| RNA-dependent RNA polymerase [Entamoeba dispar SAW760]
gi|165905172|gb|EDR30241.1| RNA-dependent RNA polymerase, putative [Entamoeba dispar SAW760]
Length = 1026
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 101/383 (26%), Positives = 166/383 (43%), Gaps = 54/383 (14%)
Query: 344 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMG---NFREIRNVAKYAARLGQSFS 400
R F+FL + SQ R + W ++ G T + +G +I+N R G S
Sbjct: 338 RYFQFLLSNPSQSRSGACWFIDNQDGKTTMAAYQSLGIDLKSPKIKNAGILLMRTGLFGS 397
Query: 401 SSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV------ASKCGLKDN 454
S T+ ++ +I++I D+ E G Y FSDG+G++ A+KV S +K +
Sbjct: 398 DSIATVGIYPQQIKVIDDITNESG---YTFSDGVGRIGYPLAKKVLNEYKRNSNLFIKSD 454
Query: 455 PPSAFQIRYGGYKGVVAADPTS-SKKLSLRDSMRKYES---ELTKLDVLAWSKYQPCFLN 510
P AFQIR+ G KGV+ D ++ + R S K E+ + KL V+ +++ +N
Sbjct: 455 EPYAFQIRFAGVKGVLTVDRLDMTETIYFRPSQIKIEALPKTIQKLRVIQIPQFRSGRMN 514
Query: 511 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLIC 570
QL L L I F ++ +++ ++ + +E + L N +++ L
Sbjct: 515 EQLALGLEYLQIPPSNFISSAKQYLKKYFSVTPN----REIISLFQRFTNNPVIEVALKM 570
Query: 571 ------GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 624
K EPF+ R S L E + I N +MG +DE+ L G+V
Sbjct: 571 IMASNGNQKIYEEPFIRATSLVLRMSLLSEKTDFIKFDIDNSAFLMGVMDESGLLEEGEV 630
Query: 625 FVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV----RVLKAVNVP 680
F+Q++ + SSR ++V K P HPGD V+ +N+
Sbjct: 631 FIQVTSP--------TITIPSSR----------LLVVKFPATHPGDFVLLNNVVDKINLE 672
Query: 681 A------LHHMVDCVVFPQKGMR 697
L ++ D +VF KG R
Sbjct: 673 KKKGYERLTYLRDVIVFSSKGNR 695
>gi|402579794|gb|EJW73745.1| hypothetical protein WUBG_15348 [Wuchereria bancrofti]
Length = 203
Score = 102 bits (255), Expect = 6e-19, Method: Composition-based stats.
Identities = 63/163 (38%), Positives = 91/163 (55%), Gaps = 12/163 (7%)
Query: 537 QLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596
QL +L + K +E L + N+ + L G+ EPF +L+ L +L
Sbjct: 34 QLADMLMNEDKCRERLNELP--LRVNVSRLTLARGFALTQEPFFRSLLRAHIKCTLKKLI 91
Query: 597 TKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 654
K +I IP GRSM G +DET L +GQ+FVQ + + L + S+S + I+
Sbjct: 92 AKIQIQIPPHLGRSMFGVMDETGQLQWGQIFVQCTRNIW--------LKTPSQSAAKIIL 143
Query: 655 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+G V++ KNPC+ GDVRV +AV++P LHH+VD VVFPQ G R
Sbjct: 144 KGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPR 186
>gi|221481781|gb|EEE20151.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii GT1]
Length = 1186
Score = 102 bits (255), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 173/439 (39%), Gaps = 112/439 (25%)
Query: 350 AFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH 409
A SSS R A + L+A I +G F + RLG FSS+ T+ V
Sbjct: 351 AMSSSLHRAQDAPLEDRNKELSAEAILSRLGVFNSSISPGVLTKRLGICFSSTLPTIDVR 410
Query: 410 MDEIEIIPDV-----------------------------KIEIGKTKYVFSDGIGKVSAE 440
+E+ ++PDV K++ +++F+DG G +S +
Sbjct: 411 DEEMLLVPDVTSSAVTAAMSGEAQRRKGEEERRISSRGIKLDPNSPEFIFTDGSGAISLD 470
Query: 441 FARKVASKCGLKDNPPSAFQIRYGGYKGVV---------AADPTSSKKLSLRDSMRKYES 491
R++ + C SAFQIR GG KG++ K L + SM K+ S
Sbjct: 471 LWRRIVA-CLPALRTSSAFQIRLGGIKGMLLLHPAFPLPRPPAPRLKHLLISQSMYKFHS 529
Query: 492 E----------------------------LTKLDVLAWSKYQPCFLNRQLISLLSTLGIW 523
L L++ +S+ P FLNRQ+I LL TLG+
Sbjct: 530 RSRIRKSAESNPGKAKLAWRFSGMASVSFLQCLEINDFSRRLPYFLNRQVILLLDTLGVE 589
Query: 524 DEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL-ICGYKPDAEPFLSM 582
+F++ QR + L I T K + E + E + + G P EPFL
Sbjct: 590 FSVFDRLQRRMLHFLRDIDTRGRKPRREAESLGTSRFAQTCLEFVSVHGVSPK-EPFLRA 648
Query: 583 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG----------------QVFV 626
L+ R S +LR KTRIF+ G ++ G D T +L Y +V V
Sbjct: 649 CLEAMRNSLADDLRKKTRIFVEKGANLFGVPDFTHSLAYDHGWRSSPSGRLYAGLPEVCV 708
Query: 627 QISGA-----------GYRQLHGESSLFS---SSRSRQRFI-------------VQGLVV 659
++ + HG S + + R ++R I +QG+V
Sbjct: 709 HVTKSPVSDSEIPRRTAIASRHGSLSPEADAEAERPKRRLISCGSHSLGAGAELIQGVVA 768
Query: 660 VAKNPCLHPGDVRVLKAVN 678
V +NPCL PGD+++ AV
Sbjct: 769 VCRNPCLLPGDIQLCFAVG 787
>gi|333440980|gb|AEF32765.1| RdRP2 [Ascaris suum]
Length = 384
Score = 102 bits (254), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 133/307 (43%), Gaps = 52/307 (16%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSP 314
DG V +V +TP+R+ PE+ + NRVLR D LR+ F D+D ++ + P
Sbjct: 87 DGYRRVRKVVLTPTRMLLVVPELLMGNRVLRTHDESGDRALRVQFRDDDGTRMKHNTVGP 146
Query: 315 RGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAE 374
I T + + L G+ I DR F +LA S+SQ+R++ + F G
Sbjct: 147 ----------YLIQTTVHNALVRGVYIADRHFVYLASSNSQMRDNGCYFFDDGDGGXXXX 196
Query: 375 IREWMGNFREIRNVAKYA---------------ARLGQSFSSSKE-TLSVHMDEIEIIPD 418
AR+GQ F+ +KE ++ + D
Sbjct: 197 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLMARMGQCFTQAKECSIKLLHRRYNKTFD 256
Query: 419 V--KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTS 476
+ ++ Y FSDG G++S EFA+++A L PS FQIR+ G KGVV+ DP
Sbjct: 257 IIGGMDSSGEPYTFSDGCGRLSPEFAQRIADDLHLGKCVPSCFQIRFRGIKGVVSVDPWL 316
Query: 477 SKKLS-----------------------LRDSMRKYESELT-KLDVLAWSKYQPCFLNRQ 512
+++ S R S K+ + L+ K++++ +S P LNR
Sbjct: 317 TERASWATEHNIADNMENYNKKNKLYMLFRPSQDKFHAPLSHKIEIVKYSSPTPVCLNRP 376
Query: 513 LISLLST 519
I++L T
Sbjct: 377 YIAILLT 383
>gi|237843439|ref|XP_002371017.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|211968681|gb|EEB03877.1| RNA dependent RNA polymerase domain-containing protein [Toxoplasma
gondii ME49]
gi|221502280|gb|EEE28013.1| RNA-dependent RNA polymerase, putative [Toxoplasma gondii VEG]
Length = 1186
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 114/439 (25%), Positives = 169/439 (38%), Gaps = 112/439 (25%)
Query: 350 AFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH 409
A SSS R A + L+A I MG F + RLG FSS+ T+ V
Sbjct: 351 AMSSSLHRAQDAPLEDRNKELSAEAILSRMGVFNSSISPGVLTKRLGICFSSTLPTIDVR 410
Query: 410 MDEIEIIPDV-----------------------------KIEIGKTKYVFSDGIGKVSAE 440
+E+ ++PDV K++ +++F+DG G +S +
Sbjct: 411 DEEMLLVPDVTSSAVTAAMSGEAQRRKGDEERRISSRAIKLDPNSPEFIFTDGSGAISLD 470
Query: 441 FARKVASKCGLKDNPPSAFQIRYGGYKGVV---------AADPTSSKKLSLRDSMRKYES 491
R++ + C SAFQIR GG KG++ K L + SM K+ S
Sbjct: 471 LWRRIVA-CLPALRTSSAFQIRLGGIKGMLLLHPAFPLPRPPAPRLKHLLISQSMYKFHS 529
Query: 492 E----------------------------LTKLDVLAWSKYQPCFLNRQLISLLSTLGIW 523
L L++ +S+ P FLNRQ+I LL TLG+
Sbjct: 530 RSRIRKSAEANPGKAKLAWRFSDMASVSLLQCLEINDFSRRLPYFLNRQVILLLDTLGVE 589
Query: 524 DEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL-ICGYKPDAEPFLSM 582
+F++ QR + L I T K + E + E + + G P EPFL
Sbjct: 590 FSVFDRLQRRMLHFLRDIDTRGRKPRRDAESLGTSRFAQTCLEFVSVHGVSPK-EPFLRA 648
Query: 583 MLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG----------------QVFV 626
L+ R S +LR K RIF+ G ++ G D T +L Y +V V
Sbjct: 649 CLEAMRNSLADDLRKKARIFVEKGANLFGVPDFTHSLAYDHGWRSSPSGRLYAGLPEVCV 708
Query: 627 QISGA-----------GYRQLHGE----------------SSLFSSSRSRQRFIVQGLVV 659
++ + HG SS S S ++QG+V
Sbjct: 709 HVTKSPVSDSEIPRRTAIASRHGSLSPEADAEAERPKRRLSSCGSHSLGAGAELIQGVVA 768
Query: 660 VAKNPCLHPGDVRVLKAVN 678
V +NPCL PGD+++ AV
Sbjct: 769 VCRNPCLLPGDIQLCFAVG 787
>gi|4768840|gb|AAD29638.1|AF117611_1 DosA protein [Dictyostelium discoideum]
Length = 1069
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 135/298 (45%), Gaps = 47/298 (15%)
Query: 415 IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-VAAD 473
+IPD+ I K + F++G G + + + + ++ A+QIR GG KGV V +
Sbjct: 1 MIPDI---ISKGGHNFTEGCGFIGFKLVELINQQNNY-NSSTCAYQIRLGGSKGVLVLNE 56
Query: 474 PTSSKKLSLRDSMRKYESELTK---------LDVLAWSKYQPCFLNRQLISLLSTLGIWD 524
L +R SM K+E + L++++ S C LNRQ I+LLS G+ D
Sbjct: 57 NIDEMSLQIRPSMSKFELDYKSGQLDGGHKTLEIVSASTTSRCKLNRQAITLLSNAGVED 116
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL------ICGYKPDAEP 578
F + + Q L D N+ KELL I Y+ +
Sbjct: 117 STFLQMLEVELNQNAQTLVD----------------VNLSKELLGDFFQHITEYELFNDY 160
Query: 579 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 638
++ +L SKL++++ K I + R+++G D + TL V++++ +L
Sbjct: 161 YIRSILLKLYKSKLIKIQDKCWIEVKESRNLLGVCDTSGTLPEDTVYIEV-----EELDP 215
Query: 639 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGM 696
+L ++ G V V KNPC HPGDVR LKA++ P L+ + + F GM
Sbjct: 216 IDNLMKPK------VIIGRVAVLKNPCHHPGDVRFLKAIDHPPLNGKRNVLFFSTNGM 267
>gi|313244084|emb|CBY14941.1| unnamed protein product [Oikopleura dioica]
Length = 784
Score = 99.4 bits (246), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 110/418 (26%), Positives = 168/418 (40%), Gaps = 73/418 (17%)
Query: 344 RKFEFLAFSSSQLRESSAWMFASRYGLTAAE---IREWMGNFREIRNVAKYAARLGQSFS 400
R+F+ LA + ++ + A RY L + + GNF +I+ V+KYAAR+G S
Sbjct: 245 REFDDLAKITVRVDRAEA-----RYSLVKRALPYVWNYFGNFNKIKIVSKYAARIGLLMS 299
Query: 401 SSKETLSVHMDEIEIIPDVKIEIGKT----------KYVFSDGIGKVSAEFARKVASKCG 450
+ T+ +PD K K KY F+DG G++ A K
Sbjct: 300 PTAATI--------FVPDKKWAREKDIVGGPPKNPEKYEFTDGCGRMCTRVAEMFRDKLN 351
Query: 451 LKD--------NPPSAFQIRYGGYKGVVAADPTSSKK----LSLRDSMRKYESELTKLDV 498
LK PS Q R G KG+ DPT + +RDS K++ + +
Sbjct: 352 LKHLYRHQGAYCVPSVIQFRMMGCKGIFVHDPTLDDADKPWVMIRDSQWKFDWNMNTVKH 411
Query: 499 LAWSK------------------YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
L K + LN Q + LL LG+ D F Q++ +L
Sbjct: 412 LERDKDGNPGRAMGVCSNGFSRPFSFGKLNEQFVVLLDALGLEDNTFLNIQKDHFERLKR 471
Query: 541 ILTDPLKAQEALELMSPGENTNILKEL-LICGYKPDAEPFLSMM------LQTFRASKLL 593
+ D + A E L + ++L Y P+ L L + + +
Sbjct: 472 CMDDRIAAFEILSSEKRMDEADLLDRTDEDSPYPPEVINTLKRFRKPVFDLPSAKPDRRE 531
Query: 594 ELRTKTRIF---IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQ 650
E K F I R++ G D + L G+ FVQI+ Y ++ + +SR +
Sbjct: 532 EKNIKNAAFYIPISKSRNVYGVADISGKLRKGECFVQITQ--YEEVVDKKR--GTSRKER 587
Query: 651 RFIVQG---LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTMLKP 705
R + G V+V K P HPGD RVL+ +VP L H+ D +VFP Y + +P
Sbjct: 588 RMLPLGNGAKVLVNKCPTYHPGDFRVLQNTHVPELMHLCDVIVFPVYDKVYNPDLKRP 645
>gi|170577358|ref|XP_001893975.1| RNA dependent RNA polymerase family protein [Brugia malayi]
gi|158599674|gb|EDP37189.1| RNA dependent RNA polymerase family protein [Brugia malayi]
Length = 261
Score = 96.7 bits (239), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 72/113 (63%), Gaps = 10/113 (8%)
Query: 587 FRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFS 644
F+ L +L K +I IP+ GRSM G +DET L +GQ+FVQ + + L +
Sbjct: 3 FKYHYLEKLIAKIQIQIPSHLGRSMFGVMDETGQLQWGQIFVQCTRNIW--------LKT 54
Query: 645 SSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
S S +FI++G V++ KNPC+ GDVRV +AV++P LHH+VD VVFPQ G R
Sbjct: 55 PSPSAAKFILKGKVMLTKNPCIVAGDVRVFEAVDIPELHHLVDVVVFPQHGPR 107
>gi|316989903|gb|ADU77017.1| RNA-dependent RNA polymerase 1c [Cucumis sativus]
Length = 400
Score = 96.3 bits (238), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 61/88 (69%), Gaps = 13/88 (14%)
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 669
MGCLDET+TL YGQVFV S G S F+V+G VVVAKNPCLHPG
Sbjct: 1 MGCLDETQTLEYGQVFVHCSIPG-------------RSSEGNFVVKGKVVVAKNPCLHPG 47
Query: 670 DVRVLKAVNVPALHHMVDCVVFPQKGMR 697
DVR+L A++V ALHHMVDCVVFPQKG R
Sbjct: 48 DVRLLDAIDVKALHHMVDCVVFPQKGKR 75
>gi|391343492|ref|XP_003746043.1| PREDICTED: uncharacterized protein LOC100902078 [Metaseiulus
occidentalis]
Length = 1371
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 120/478 (25%), Positives = 198/478 (41%), Gaps = 63/478 (13%)
Query: 237 RKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLR 296
RK +SR+ + + D L V R V PS+ P + + +LR D + +
Sbjct: 377 RKGKSSRTSIINQKLPQD--LYLVKRAIVCPSKTIVKPPTVVRVSALLRSV--DPEKVML 432
Query: 297 ISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL 356
+ D+D ++ + + RT I I ++ GI I + + FL S SQ
Sbjct: 433 VDVRDDDGTRLRF--------NTQNEARTFIQVSIAEKIKRGIKIAGKTYYFLGNSKSQA 484
Query: 357 RESSAWMFASRYGLT--AAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVH----M 410
+ S W +A G T + +RE +G N+A+ A F+ + +S+
Sbjct: 485 EDFSFWAYAIEKGDTDTISSVRERLGI---TGNLARRIAVQDLVFAEALGAVSIDPSWVS 541
Query: 411 DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 470
+E E +P F GIG++S R V C SA ++ +GG +G +
Sbjct: 542 EESEDVPAASD--------FKHGIGRISEAALRTVVENCHWSRTLCSAIRVIHGGRRGTL 593
Query: 471 AADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEK 529
DP+ ++ R S SE + L ++ S+ + +R LIS LS+ D + E+
Sbjct: 594 VYDPSLEGSRIIYRKSQTVIRSEDSTLYLIGRSEMKNAAFDRTLISTLSSKA--DGLTEE 651
Query: 530 KQREA-VRQLDAILTDPLKAQEALELMSPGENTNILKELL-----ICGYKPDAEPFLSMM 583
E + L +LT+PL + +L + + GY + +
Sbjct: 652 FSVEDFLTPLYELLTEPLSLYSTGARVKRVAAEPVLDHIFRKGEDLYGYDKRGD---GLF 708
Query: 584 LQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESS 641
Q R L LR K + + N +M +DE L G+VF+Q+S G G+
Sbjct: 709 RQAVRCKALKALRDLKKLKQHMTNAYEIMPVVDELGLLEEGEVFIQVSSPG-----GDLR 763
Query: 642 LFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP----ALHHMVDCVVFPQKG 695
+ S G +V+A+ +H + R + AVN P AL H+ +CVV P KG
Sbjct: 764 VLS-----------GDLVLARKDAMHLEEFRRVTAVNRPDVVGALGHLFNCVVLPSKG 810
>gi|119370386|gb|ABL68090.1| putative RNA-directed RNA polymerase 3 [Nicotiana attenuata]
Length = 110
Score = 94.7 bits (234), Expect = 2e-16, Method: Composition-based stats.
Identities = 49/107 (45%), Positives = 69/107 (64%), Gaps = 1/107 (0%)
Query: 509 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 568
LNRQ+++LLS+L + D IF + Q+E + LD +L D A + + S E N +L
Sbjct: 1 LNRQIVTLLSSLDVKDGIFWEMQKEMISGLDKMLVDSDVAFDVIT-ASCAEAGNTAAIML 59
Query: 569 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 615
G+KP +EP L ML + RAS+L +LR K RIF+P+GR +MGCLDE
Sbjct: 60 SAGFKPQSEPHLRGMLSSIRASQLGDLRNKARIFVPSGRWLMGCLDE 106
>gi|241083169|ref|XP_002409050.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215492623|gb|EEC02264.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 167
Score = 93.6 bits (231), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/95 (50%), Positives = 62/95 (65%), Gaps = 5/95 (5%)
Query: 604 PN-GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
PN GR+M+G LDET++L YG+VFVQ + QL + S + I+ G V+V K
Sbjct: 3 PNTGRNMLGVLDETQSLEYGEVFVQFT---EHQLD-DGSCEDDPKVPTTKILVGAVLVTK 58
Query: 663 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
PCLHPGDVR AV++P LHH+ DC+VFP KG R
Sbjct: 59 CPCLHPGDVRKFAAVDIPGLHHVKDCIVFPAKGPR 93
>gi|342884280|gb|EGU84517.1| hypothetical protein FOXB_04968 [Fusarium oxysporum Fo5176]
Length = 206
Score = 93.2 bits (230), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/172 (37%), Positives = 94/172 (54%), Gaps = 13/172 (7%)
Query: 382 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF 441
+ +R +A A R+G FSS+ +++ D E IP+V+ Y+F+DG G ++ +
Sbjct: 1 YASLRRIAAKAKRIGLLFSSATTVTTINPDRCEDIPNVET----ADYIFTDGCGLIALKL 56
Query: 442 ARKVA--SKCGLKDN--PPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYE-SEL 493
A ++A ++ L+DN PS FQIRY GYKGVV DP +K+ L LR SM+K+ E
Sbjct: 57 ANELARRTRILLRDNRYTPSVFQIRYRGYKGVVIVDPRMTKQNPLLKLRKSMKKFNGGED 116
Query: 494 TKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTD 544
V+ +SK + +LN + I LL L I E KQR+ R L TD
Sbjct: 117 HSFAVVEYSKPFSYGYLNDETIILLHALRISQETLLSKQRDHFRLLSNAKTD 168
>gi|290993091|ref|XP_002679167.1| RNA dependent RNA polymerase [Naegleria gruberi]
gi|284092782|gb|EFC46423.1| RNA dependent RNA polymerase [Naegleria gruberi]
Length = 1235
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 88/332 (26%), Positives = 143/332 (43%), Gaps = 72/332 (21%)
Query: 415 IIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNP------------------- 455
+IPD++ + + F+DG G +S + A+KV +N
Sbjct: 340 VIPDIE----RDGFNFTDGCGFISPDMAKKVYKHILNAENRVLIKTDQEEDEIGYDEQRG 395
Query: 456 ----------PSAFQIRYGGYKGVVAADPTSSKK----LSLRDSM------RKYESELTK 495
PSAFQIR+ G KG++ + + +K + LR+SM K + +
Sbjct: 396 FDLFSDSSYIPSAFQIRFRGAKGMLVVNTETFEKYRVHIVLRESMVKCKTNEKVDQSFST 455
Query: 496 LDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK--AQEALE 553
L ++ S PC L R +++ L D E ++R + A + + L E E
Sbjct: 456 LQIVGHS--SPCELTRVNSTIMHLLSGCDSNGEVRKR-VLEMASAHVQNSLDKYVHEDTE 512
Query: 554 LMSPG--ENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMG 611
+++ ++ N++ ++ K FL A L T +I N R + G
Sbjct: 513 VIARQYMKDNNLISLNVLSTTKNKGFAFL--------AGPYKSLITSLKIPFSNSRRLYG 564
Query: 612 CLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 671
+D LN G+VFVQIS F + +Q ++Q +V+ K PCLH GD+
Sbjct: 565 VVDPYEVLNEGEVFVQISS------------FKNPSHKQ--VLQKEIVLTKEPCLHRGDL 610
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
R +KAV P L H+ D +VF KG R + M+
Sbjct: 611 RKIKAVYYPKLSHLCDVIVFSSKGKRPVPNMI 642
>gi|401885543|gb|EJT49653.1| hypothetical protein A1Q1_01210 [Trichosporon asahii var. asahii
CBS 2479]
Length = 957
Score = 92.0 bits (227), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 104/434 (23%), Positives = 184/434 (42%), Gaps = 83/434 (19%)
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDE-DLDKIHSTDLSPRGSSATDITRTRIYTRILST 334
E+ S +R+ D FLR+ FIDE D +++ T L + T R+
Sbjct: 313 EVETSTDAIRNHLSFSDRFLRVEFIDEEDGFQVNPTVLEADQMEPAEGT----VARVRRA 368
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFAS--RYGLTAAEIREWMG-NFREIRNVAKY 391
+ NG+ I R + FLA+ ++ R+ S W A LT ++ +G + VA++
Sbjct: 369 MMNGLNIAGRHYVFLAYGATSARQQSCWFLAEDPAKNLTVESVKRNLGLDLLRDTTVARF 428
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPDV-KIEIGKTKYVFSD-GIGKVSAEFARKVASKC 449
+++ I+PD+ + + Y SD G ++SA V K
Sbjct: 429 VSKMAI-----------------ILPDILHADQQEKGYCESDAGRTEISA-----VEDKE 466
Query: 450 GLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDV-LAWSKYQPCF 508
+++ S+++ R S KY + + L +++
Sbjct: 467 SMEN----------------------VSEEVYFRQSQVKYRTGSKTMAYGLNIVEFKRAH 504
Query: 509 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA---QEALELMSPGENTNI-L 564
L+RQ + +++ LG+ D +FE A+R+ +L A +E L L+S ++T+ +
Sbjct: 505 LSRQAVVIMNHLGVPDAVFESLFILAMREARGLLKRSATAGLLKEGLSLVS--QHTHFPV 562
Query: 565 KELLICGYKPDAEPFLSMMLQTFRASK---LLELRTKTRIFIPNGRSMMGCLDETRTLNY 621
EL G+K D M+L RA+ L + R R+ + +MG DE L+
Sbjct: 563 SELYSFGFKTD-----PMLLDICRATAVRLLSDYRHNARLQVDQSVKLMGIADELNVLSE 617
Query: 622 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
+VF Q S +V G + ++P LHPGD++++ AV+ P
Sbjct: 618 HEVFCQYD--------------DPDSSDGPNVVLGACAIMRDPVLHPGDIQLVHAVDRPE 663
Query: 682 LHHMVDCVVFPQKG 695
LHH+ + +VF +G
Sbjct: 664 LHHLRNVIVFSVQG 677
>gi|290976086|ref|XP_002670772.1| predicted protein [Naegleria gruberi]
gi|284084334|gb|EFC38028.1| predicted protein [Naegleria gruberi]
Length = 1384
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 155/351 (44%), Gaps = 75/351 (21%)
Query: 403 KETLSVHMDEIEIIPDVKIE---IGKTKYVFSDGIGKVSAEFARKV-------------A 446
K++L + + +IP + + + + +F+DG G +S E A KV
Sbjct: 349 KQSLRLALFNTPVIPTIGVSEYTVINDEGLFTDGCGFISLELAMKVYEIVRKSKNLLKYQ 408
Query: 447 SKCGLKDNP----------------PSAFQIRYGGYKGVVAADPTSSK----KLSLRDSM 486
SK + ++ P A+QIR+ G KG+V P + K L LR SM
Sbjct: 409 SKQSMDEDGIYEENDGVEFLVNEYLPCAYQIRFRGAKGMVYIHPNAEKVYGHHLVLRKSM 468
Query: 487 RKYESELTKLDVL------AWSKYQPCFLNRQLISLLSTL-GIWDE-----IFEKKQREA 534
K E T D++ +S PC R +++ L G DE IFE ++A
Sbjct: 469 MKIEHPNTDDDIINNLCIVGYS--SPCDFARINSTIMHILEGCEDETKQGKIFEILNQKA 526
Query: 535 VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 594
+ ++ ++ + + + ++ L + + L+ + +R +++L
Sbjct: 527 CKHIENLMKNYISESDIDKVFDQYVKQGDYASLNVLSILKSKK--LAFLTGPYR-NQILS 583
Query: 595 LRTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF 652
LR IP + R + G D L GQ+F+Q+S S + +++
Sbjct: 584 LR------IPCYSSRRLYGIADPFGVLKEGQIFIQVS--------------SLNDPKKKN 623
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
+++ V+V K PCLH GD+R L+AVN+P L+ + D +VFP KG R I M+
Sbjct: 624 VIENTVIVTKEPCLHRGDLRKLEAVNIPELNFLYDVIVFPTKGSRPITNMI 674
>gi|242215346|ref|XP_002473489.1| predicted protein [Postia placenta Mad-698-R]
gi|220727390|gb|EED81310.1| predicted protein [Postia placenta Mad-698-R]
Length = 1162
Score = 90.1 bits (222), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 117/505 (23%), Positives = 200/505 (39%), Gaps = 95/505 (18%)
Query: 263 VQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDI 322
V TP+R+ GP SN V+R + D+F+R+ F+DE+L + + D G +
Sbjct: 348 VTFTPTRMILEGPTRVQSNSVIRKYWPHRDHFIRVDFLDENLSQ-YRFDREVDGPAF--- 403
Query: 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNF 382
++ + L+ G + F++ S Q A R +TA IR +G+
Sbjct: 404 ----LHDHVGKVLKGGFEVAGSPFDYSPDSEMQP--------AVR--MTADRIRGALGDL 449
Query: 383 REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFA 442
EI+ AKYAAR+GQ+F+S+ ++ + D+ E I ++ E + +DG+G++S
Sbjct: 450 SEIKIPAKYAARIGQAFTSTMCSMPISRDQWEEIDEI-WEDRENPRSHTDGVGRLSQALM 508
Query: 443 RKVAS-------KCGLKDNPPSAFQIRY------------------GGYKGVVAADPT-S 476
++ G+ PSA Q R+ GYKGV+A DP S
Sbjct: 509 DRIWDIVCNLYPDYGVYGVKPSAVQFRFLGKSFNTIVQKITHSSSPLGYKGVLAVDPQLS 568
Query: 477 SKKLSLRDSMRKYESELT------KLDVLAWSKYQP------------CFLNRQLISLLS 518
+++ R MRK++ + LD Q +L R L+S+L
Sbjct: 569 GERICFRPEMRKFKPLICPYCREGNLDFCPHENDQNLHIADIFDSPKRAYLTRDLVSILE 628
Query: 519 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGEN---TNILKELLICGYKP- 574
G+ + F Q+EA + + + L+ G +L+ L G
Sbjct: 629 DRGVHLKAFMDLQQEAKMKTYQARDSVTQFMDILQTHHMGFQFRLPRLLERLDSLGVDAT 688
Query: 575 ---DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGA 631
+A+ F + + L +++ + RI +P ++G DE Q + +
Sbjct: 689 RNQEADDFTRRVREHAIQHVLCDMKNRARIPVPRSYLLVGVADEGPAYT-KQGYENVFQL 747
Query: 632 GYRQLHGESSLFSSS------RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
G Q+ G L++ S R F+ V H G V
Sbjct: 748 GANQIFGPYILYTCSQALTARRGHHDFLQPAFNKVQMQN--HSGSV-------------- 791
Query: 686 VDCVVFPQKGMRYILTMLKPRLLWY 710
+V + +RYIL M++ WY
Sbjct: 792 --AIVLLRGALRYILVMVRGASSWY 814
>gi|238599737|ref|XP_002394960.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
gi|215464849|gb|EEB95890.1| hypothetical protein MPER_05070 [Moniliophthora perniciosa FA553]
Length = 346
Score = 89.7 bits (221), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 36/215 (16%)
Query: 244 SKPSSPAISLDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDED 303
S S ++L G + V TP+R+ GP S+R++R ++ D+F+R+ F +ED
Sbjct: 139 SAAPSSLLNLPLGQFNCYHVTFTPTRMITEGPYPTQSHRIIRRYKGFEDHFIRVDFCEED 198
Query: 304 LDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWM 363
K G + + R+ + L+ G +G R F+FLA+S S LR S W
Sbjct: 199 RTKY--------GDDREVDSIPFLKGRVGNILKRGFPLGGRHFQFLAYSGSGLRSHSVWF 250
Query: 364 FASRYG-----LTAAEIREWMGNFRE--------------------IRNVAKYAARLGQS 398
+ + + AA+IR+ +G+FR+ +R+ +KY ARLG +
Sbjct: 251 MSEFHHPLEGLVNAAKIRDSIGDFRDLRIEEYPEQERRFYQADQDLLRHPSKYGARLGLA 310
Query: 399 FSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDG 433
F++++ ++ + D+ +I+PD++ G +F+DG
Sbjct: 311 FTATRPSVRIRRDQWDIVPDIE---GDKSRLFTDG 342
>gi|66736429|gb|AAY54273.1| RNA-dependent RNA polymerase [Caenorhabditis remanei]
Length = 200
Score = 87.4 bits (215), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 60/92 (65%), Gaps = 1/92 (1%)
Query: 606 GRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
GRSM+G +DET L YGQ+FVQ + +L S++ + + +V G V++ KNPC
Sbjct: 6 GRSMLGIVDETGRLQYGQIFVQYTRNSNEKLPPRSNM-QHMKVQGSQVVTGTVLLTKNPC 64
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+ GDVR+ +AV++P LHH+ D VVFPQ G R
Sbjct: 65 IVTGDVRIFEAVDIPELHHLCDVVVFPQHGPR 96
>gi|253743974|gb|EET00246.1| RNA-directed RNA polymerase, putative [Giardia intestinalis ATCC
50581]
Length = 1989
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 162/383 (42%), Gaps = 88/383 (22%)
Query: 377 EWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGK 436
+W+G E++ K R G F S T+ V ++ IIPD + YVF+DG G+
Sbjct: 428 KWLGTISELQ-ACKICTRRGLCFGKSLPTIKVKEQDVHIIPDRQYH----DYVFTDGAGE 482
Query: 437 VSAEFARKVA-----------------------------SKCGLKDNP------------ 455
+S + ++A G +D
Sbjct: 483 ISYDLMLEIAVCLDQIKTEQLNTNRDIGNFSDYNDDNEGEDGGTEDATLDLQTDLKVLSN 542
Query: 456 ----PSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY------ESELTKLDVLAWSKY 504
PSA Q+R+ G KGV+ + + + L S K+ E++ T L+VL +
Sbjct: 543 SIQVPSALQMRWAGAKGVLILNALLPPRTILLHKSQVKFTIPNPTETQQT-LEVLRVAYP 601
Query: 505 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL---KAQEAL-ELMSPGEN 560
+N Q+I LLS +G+ DE+F + +++ + ++P+ + Q L +L+S
Sbjct: 602 SRGMINMQIIVLLSEMGVPDEVFLNLVHQDLQKA-LVFSEPMDRCRHQADLYQLVSRASR 660
Query: 561 TN---ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 617
++ ++ ++L+ G EP L +L + +L ++ R +P+ R ++G D
Sbjct: 661 SSSGKLILQMLMAGVDI-TEPCLQFVLMKLQMMQLRSMKANMRFSVPDSRILIGIYDCFN 719
Query: 618 TLNYGQVFV------------------QISGAGYR---QLHGESSLFSSSRSRQRFIVQG 656
L G+V++ IS A + L +F + V+G
Sbjct: 720 LLKEGEVYIGLQSPLVISKWVASTHLKAISDAQHDTSISLSSHPHIFDMASEFGPSCVEG 779
Query: 657 LVVVAKNPCLHPGDVRVLKAVNV 679
VVVAKNPC + GDVRV +AVN+
Sbjct: 780 RVVVAKNPCFYRGDVRVYQAVNL 802
>gi|242216941|ref|XP_002474274.1| predicted protein [Postia placenta Mad-698-R]
gi|220726566|gb|EED80511.1| predicted protein [Postia placenta Mad-698-R]
Length = 998
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 77/303 (25%), Positives = 133/303 (43%), Gaps = 47/303 (15%)
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNV---AKY 391
+R+G+L+ D + FL F+ ++E F + A +++GN R++ + KY
Sbjct: 71 MRDGLLLRDEHYTFLGFTDGHVKEGKLVFFREDASWSVARFMDYIGNLRDVYSAYGYGKY 130
Query: 392 AARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGL 451
AARL SFSS+ E+L V + IPD + G + SDG G + FA V G+
Sbjct: 131 AARLALSFSSTVESLDVPFVKAARIPDRRARDGS---LHSDGCGLIRHSFAMDVCRNNGI 187
Query: 452 KDNPPSAFQIRYGGYKGVVAADPTSS-KKLSLRDSMRKYESELTKLDVLAWSKYQPCFLN 510
+ FQIR GG KG++ P + K++LR ++R+
Sbjct: 188 APD-TCVFQIRRGGIKGLLVRYPDNQFDKVTLRMAIRR---------------------- 224
Query: 511 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL-- 568
IFEK ++ + + IL + +A++ ++ NT + L
Sbjct: 225 --------------AIFEKMLQDQLDLIGCILHNRDQAEKYIKGELDASNTTAFNQDLYA 270
Query: 569 ICGYKPD-AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 627
I K D EP++ L+ F+ + L K + + + + G +DE+ L +VF+
Sbjct: 271 ILLAKHDLNEPYVEWKLRQFQQQQCNLLHKKLNLRVEDSCYVFGVIDESGVLEEDEVFLN 330
Query: 628 ISG 630
+ G
Sbjct: 331 LPG 333
>gi|299740358|ref|XP_001838853.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298404206|gb|EAU82968.2| RNA-directed RNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 1548
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 83/282 (29%), Positives = 128/282 (45%), Gaps = 44/282 (15%)
Query: 326 RIYTRILSTL-RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 384
R T L+ + + G+ + ++ F S+SQLR S ++ + + +G+F
Sbjct: 32 RTTTEYLNRMFKAGVFLNGVQYRFYHHSNSQLRGRSCFLREANSDKELDDRIYALGDFSR 91
Query: 385 IRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 444
I N+AK A R+G FSS++ ++ +E I D IEIG VFSDG G +S ++
Sbjct: 92 INNIAKRAKRIGLLFSSAEVDFNLDPTFVEDIGD--IEIGGE--VFSDGCGLISKSLTKQ 147
Query: 445 VASKCGLK----DNPPSAFQIRYGGYKGVVAADPTSSKK------------LSLRDSMRK 488
+A L P QIRY GYKGV+ P ++ R SM+K
Sbjct: 148 IAKAKKLMFRGIRYTPVVIQIRYEGYKGVLMLHPDLDERNRQREPGTPPCYAQFRKSMKK 207
Query: 489 YESELT-KLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQRE------AVRQLDA 540
+++ V+ +SK Y LN +I+L+ +LG+ E KQ+E ++ QLD
Sbjct: 208 FKATSDHSFSVVGYSKPYSFGRLNNDIITLIHSLGVTKEKLVAKQQEYFDWIASITQLD- 266
Query: 541 ILTDPLKA------------QEALELMSPGENTNILKELLIC 570
TDP A EA+ L E + IL +L C
Sbjct: 267 --TDPTAALDFLSCTDKYAEAEAIFLHDAEERSKILNDLRDC 306
>gi|402580635|gb|EJW74584.1| hypothetical protein WUBG_14509 [Wuchereria bancrofti]
Length = 168
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%), Gaps = 8/89 (8%)
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
M G +DET L +GQ+FVQ + + L + S+S + I++G V++ KNPC+
Sbjct: 1 MFGVMDETGQLQWGQIFVQCTRNIW--------LKTPSQSAAKIILKGKVMLTKNPCIVA 52
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GDVRV +AV++P LHH+VD VVFPQ G R
Sbjct: 53 GDVRVFEAVDIPELHHLVDVVVFPQHGPR 81
>gi|7505900|pir||T23669 hypothetical protein M01G12.12 - Caenorhabditis elegans (fragment)
gi|25395342|pir||F87936 protein M01G12.12 [imported] - Caenorhabditis elegans
Length = 604
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 86/165 (52%), Gaps = 25/165 (15%)
Query: 253 LDDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
+++G V +V TP+RV + PE+ + NRVLR+F RD + LR++F D++ K+ +
Sbjct: 443 IEEGYQRVRKVIFTPTRVIYTPPEMIMGNRVLRNFDRDGTHVLRVTFRDDNNRKMRA--- 499
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA------- 365
+ T + + L +GI++ +R F FL SSSQ+R++ A+
Sbjct: 500 --------NATGELLDICVKKYLEHGIVVANRDFGFLGCSSSQMRDNGAYFMVKNTDNRH 551
Query: 366 -------SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 403
S++ +R +GNF +I N+ K ARLGQ F+ S+
Sbjct: 552 KNACKMNSKFKPNIDSVRNQLGNFLQIENIPKLMARLGQCFTQSR 596
>gi|15419599|gb|AAK97084.1|AF293414_1 RNA-dependent RNA-polymerase [Giardia intestinalis]
Length = 1377
Score = 84.0 bits (206), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 160/378 (42%), Gaps = 83/378 (21%)
Query: 378 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 437
W+G+ +E++ K R G F S T+ V ++++I+ D + YVF+DG G++
Sbjct: 260 WLGDIKEVQ-ACKICTRRGLCFGKSLPTIKVREEDVQIVSDKEY----NGYVFTDGAGEI 314
Query: 438 SAEFARKVA------------------SKCGLKDNP-----------------------P 456
S + ++A G D P
Sbjct: 315 SYDLMLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVP 374
Query: 457 SAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY------ESELTKLDVLAWSKYQPCFL 509
SA Q+R+ G KGV+ + + + S K+ E++ T L++L ++ +
Sbjct: 375 SAVQMRWAGTKGVLILNALLPPRTILFHKSQVKFSIPNPTETQQT-LEILRVAQRSKGMI 433
Query: 510 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL--TDPLKAQEAL-ELMSPGENTN---I 563
N Q+I LLS +G+ D++F + +++ L D + Q L +L+S +++ +
Sbjct: 434 NMQIIVLLSEMGVPDDVFLNLVYQDLQKTLLFLEPVDRCRHQADLYQLVSRASHSSSGKL 493
Query: 564 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 623
+ ++L+ G EP L +L + +L ++ R ++P+ R +G D L G+
Sbjct: 494 ILQMLMAGVDI-TEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEGE 552
Query: 624 VFVQISGA-GYRQLHGESSLFSSSRSRQR---------------------FIVQGLVVVA 661
V+V + + + L + S Q+ V+G VVVA
Sbjct: 553 VYVGLQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGRVVVA 612
Query: 662 KNPCLHPGDVRVLKAVNV 679
KNPC + GDVR+ AVN+
Sbjct: 613 KNPCFYRGDVRIYHAVNI 630
>gi|159120120|ref|XP_001710276.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
gi|21666386|gb|AAM73688.1|AF393743_1 RNA dependent RNA polymerase [Giardia intestinalis]
gi|157438394|gb|EDO82602.1| RNA-directed RNA polymerase, putative [Giardia lamblia ATCC 50803]
Length = 2001
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 160/378 (42%), Gaps = 83/378 (21%)
Query: 378 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 437
W+G+ +E++ K R G F S T+ V ++++I+ D + YVF+DG G++
Sbjct: 428 WLGDIKEVQ-ACKICTRRGLCFGKSLPTIKVREEDVQIVSDKEY----NGYVFTDGAGEI 482
Query: 438 SAEFARKVA------------------SKCGLKDNP-----------------------P 456
S + ++A G D P
Sbjct: 483 SYDLMLEIALCLDKLKIEQLHKDTETYYDNGFADTNEDSEHTVPHLQPNLKTASNLIQVP 542
Query: 457 SAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY------ESELTKLDVLAWSKYQPCFL 509
SA Q+R+ G KGV+ + + + S K+ E++ T L++L ++ +
Sbjct: 543 SAVQMRWAGTKGVLILNALLPPRTILFHKSQVKFSIPNPTETQQT-LEILRVAQPSKGMI 601
Query: 510 NRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL--TDPLKAQEAL-ELMSPGENTN---I 563
N Q+I LLS +G+ D++F + +++ L D + Q L +L+S +++ +
Sbjct: 602 NMQIIVLLSEMGVPDDVFLNLVYQDLQKTLLFLEPVDRCRHQADLYQLVSRASHSSSGKL 661
Query: 564 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 623
+ ++L+ G EP L +L + +L ++ R ++P+ R +G D L G+
Sbjct: 662 ILQMLMAGVDI-TEPCLQFLLMKLQMMQLRSMKANMRFYVPDSRIFVGVYDCFDLLKEGE 720
Query: 624 VFVQISGA-GYRQLHGESSLFSSSRSRQR---------------------FIVQGLVVVA 661
V+V + + + L + S Q+ V+G VVVA
Sbjct: 721 VYVGLQEPLSISKWAAATHLKAMSNDTQQEALLPPDLDLQISDIAVGLNISCVEGRVVVA 780
Query: 662 KNPCLHPGDVRVLKAVNV 679
KNPC + GDVR+ AVN+
Sbjct: 781 KNPCFYRGDVRIYHAVNI 798
>gi|341879478|gb|EGT35413.1| hypothetical protein CAEBREN_30970 [Caenorhabditis brenneri]
Length = 1948
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 109/245 (44%), Gaps = 33/245 (13%)
Query: 479 KLSLRDSMRKYESELTKLD-----VLAWSKYQPCFLNRQLISLLSTLG----------IW 523
K R+S K+ S D ++ WS P LNR I++L + I
Sbjct: 902 KCLFRESQMKFHSSTGGKDKWPIELVKWSSPTPVTLNRPFINILDQVSALQSLDCHKRIC 961
Query: 524 DEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMM 583
I E E D I+ + K + LE M + G+ EPF +
Sbjct: 962 GRIEELLDIEMDSFTDCIINED-KCRSKLEGMP--RRVHFPSLWRRNGFSLCTEPFFRAL 1018
Query: 584 LQTFRASKLLELRTKTRIFIPN--GRSMMGCLDETRTLNYGQVFVQI---------SGAG 632
++ ++ L K I IP+ GRSM G DET L YGQVFVQ SG
Sbjct: 1019 IKAAIDFSMMRLLKKVNIPIPSNVGRSMFGVTDETGLLQYGQVFVQYTENVNNKHPSGVS 1078
Query: 633 YRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFP 692
+ L G+S+ S + +FI G ++V K P + GDVR+ +AV++P L H+ + +VFP
Sbjct: 1079 GKILKGKSNFLSF---KIQFI-SGPLMVTKFPSMCEGDVRMYEAVDIPELRHLENVIVFP 1134
Query: 693 QKGMR 697
Q G R
Sbjct: 1135 QNGPR 1139
>gi|440493516|gb|ELQ75976.1| RNA-directed RNA polymerase QDE-1, partial [Trachipleistophora
hominis]
Length = 714
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 84/173 (48%), Gaps = 22/173 (12%)
Query: 456 PSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLIS 515
P+AFQIR+ GYKGVV L LR SMRK+ S T L+V+ +S+ C+LNRQ+I
Sbjct: 15 PTAFQIRFAGYKGVVVRAHIP-HDLILRKSMRKFNSTYTILEVVNYSQPIECYLNRQIIM 73
Query: 516 LLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPD 575
+L LGI F Q E + Q+ + L I K I G
Sbjct: 74 ILEGLGIPKHNFISLQNEYLMQMYRAINHSL----------------ISKYCRIGGVALV 117
Query: 576 AEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 628
+++ + FR E+ K RIF+ NG +MG +DE L +VFV++
Sbjct: 118 DRMSGAVIGRLFR-----EMCAKGRIFVSNGVVLMGVIDEEGVLGENEVFVRV 165
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 30/50 (60%)
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
+V G +VAKNPCLHPGD+R + V L H + +VF +KG R M
Sbjct: 256 VVVGNAIVAKNPCLHPGDIRKVHCVYKKELLHYKNVLVFSRKGTRPTFNM 305
>gi|308161550|gb|EFO63991.1| RNA-directed RNA polymerase, putative [Giardia lamblia P15]
Length = 1999
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 89/380 (23%), Positives = 169/380 (44%), Gaps = 88/380 (23%)
Query: 378 WMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKV 437
W+G+ E++ K R G F S T+ V + ++++ D + YVF+DG G++
Sbjct: 429 WLGDINEVQ-ACKICTRRGLCFGKSLPTIKVREEHVQVVADRQY----NNYVFTDGAGEI 483
Query: 438 SAEFARKVA--------------------------------SKCGLKDN---------PP 456
S + ++A + L+ N P
Sbjct: 484 SYDLMLEIALCLNKLKVEQLNKNTETHYLDEFADTSEDTEQNMSHLQPNLKTISNLIQVP 543
Query: 457 SAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKY------ESELTKLDVLAWSKYQPCFL 509
SA Q+R+ G KGV+ + K + L +S K+ E++ T +++L ++ +
Sbjct: 544 SAVQMRWAGAKGVLILNALLPPKTILLHNSQIKFSIPNPTETQQT-IEILRVAQPSKGMI 602
Query: 510 NRQLISLLSTLGIWDEIF----EKKQREAVRQLDAILTDPLKAQEAL-ELMSPGENT--- 561
N Q+I LLS +G+ D++F + ++A+ L+ I D + Q L +L+S ++
Sbjct: 603 NMQIIVLLSEMGVPDDVFLNLVYQDLQKALLFLEPI--DRCRYQADLYQLVSRTSHSPSG 660
Query: 562 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 621
I+ ++L+ G EP L +L + +L ++ R +P+ R +G D L
Sbjct: 661 KIILQMLMAGVDI-IEPCLQFILMKLQLMQLRSMKANMRFSVPDSRIFVGIYDCFDLLKE 719
Query: 622 GQVFV----QISGAGYRQLHGESSLFSSSRSRQRFI------------------VQGLVV 659
G+V++ +S + + ++F+ ++ R+ + V+G V+
Sbjct: 720 GEVYIGLQEPLSISKWTATTHLKAIFNDTQ-RESLLPPDLNLHISDVVGLDISCVEGRVI 778
Query: 660 VAKNPCLHPGDVRVLKAVNV 679
VAKNPC + GDVR+ +AVN+
Sbjct: 779 VAKNPCFYRGDVRIYQAVNI 798
>gi|115437172|ref|NP_001043229.1| Os01g0527600 [Oryza sativa Japonica Group]
gi|113532760|dbj|BAF05143.1| Os01g0527600, partial [Oryza sativa Japonica Group]
Length = 385
Score = 81.3 bits (199), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 40/44 (90%)
Query: 654 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+ G VV+AKNPCLHPGDVR+L+AV+VP LHH+VDC+VFPQKG R
Sbjct: 1 ILGTVVIAKNPCLHPGDVRILEAVDVPELHHLVDCLVFPQKGER 44
>gi|402577566|gb|EJW71522.1| hypothetical protein WUBG_17571 [Wuchereria bancrofti]
Length = 89
Score = 80.5 bits (197), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/89 (44%), Positives = 55/89 (61%), Gaps = 8/89 (8%)
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
M G LDET L YGQVFVQ + + L + ++ + IV+G V++ KNP +
Sbjct: 1 MFGILDETGLLQYGQVFVQFTNDVF--------LKTPPKAAAKTIVKGFVLITKNPSIVA 52
Query: 669 GDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GDVR+ +AV++P L H+VD VVFPQ G R
Sbjct: 53 GDVRIFEAVDLPELRHLVDVVVFPQHGPR 81
>gi|336378305|gb|EGO19463.1| hypothetical protein SERLADRAFT_442939 [Serpula lacrymans var.
lacrymans S7.9]
Length = 733
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 89/326 (27%), Positives = 135/326 (41%), Gaps = 76/326 (23%)
Query: 405 TLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS------KCGLKDNPPSA 458
TL VH EI I D +G V +DG G +S +V S K N PSA
Sbjct: 109 TLEVH--EISQIDDRISPVGN---VMTDGCGTISVALCNEVWSSLRNRKKHKHVKNVPSA 163
Query: 459 FQIRYGGYKGVVAADP-TSSKKLSLRDSMRKYESE-LTKLDVLAWSKYQP--CFLNRQLI 514
+Q R GG KGV+ DP + LR S K+++ + LD+ + S QP FLNR LI
Sbjct: 164 YQFRIGGAKGVLVQDPRLEGNVVCLRPSQTKFDAPGIRTLDIQSTSS-QPKAMFLNRPLI 222
Query: 515 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-------------------- 554
LL LG Q A+ + L A + +
Sbjct: 223 VLLEYLGTDSNHIIALQNNAISEAQTAHNSFLDASKMFQKNNFGASFRLPSLFHNLATLL 282
Query: 555 -MSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 613
+ PG+++ L+ +K D ++ +LQ L EL+ + I +P +++G
Sbjct: 283 DIHPGDSS---LGLVSTSWKHD---LVAKLLQCVSTYALRELKYRAHIAVPGSYTLLG-- 334
Query: 614 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 673
DE + L+ S ++G V++ ++ +HPGDV+V
Sbjct: 335 DE-----------------------RTGLYKS--------IEGRVLITRSAQIHPGDVQV 363
Query: 674 LKAVNVPALHHMVDCVVFPQKGMRYI 699
+ AV P L H+ + VVF KG R +
Sbjct: 364 VTAVRHPELSHLTNVVVFSCKGNRSL 389
>gi|297832162|ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329803|gb|EFH60222.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata
subsp. lyrata]
Length = 981
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 129/509 (25%), Positives = 195/509 (38%), Gaps = 105/509 (20%)
Query: 254 DDGLVYVHRVQVTPSRVY-FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDL 312
D G + ++ V P Y F GP + + L D +N L + F D
Sbjct: 208 DSGKTHYYQCHVAPDGSYTFKGPLLEHTGTHLHKVLGD-ENVLTVKFAD----------- 255
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF------------SSSQLR--- 357
P+ SS R Y I +NGI+IG R+++F F S+ +++
Sbjct: 256 VPKNSSTYSNDRYFTYKEIA---KNGIMIGLRRYQFFVFKDGGKEEKKKDLSTKKVKCYF 312
Query: 358 ----ESSAWMFASRYGLTAAEIREWMGNFREIR---NVAKYAARLGQSFSSSKETLSVHM 410
+++ + Y T I E +F + +A Y AR S +K TL V M
Sbjct: 313 IRTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAPTLANYMARFSLILSKTK-TLEVDM 371
Query: 411 DEIEIIP---------DVKIEIGKTKY--VFSDGIGKVSAEFARKV-----ASKCGLKDN 454
I P D K + K K + SDG G +S + AR KC +N
Sbjct: 372 TGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGKCLRSEN 431
Query: 455 --------PPSAFQIR--YGGY--KGVVAADPT-SSKKLSLRDSMRKYE--------SEL 493
PP Q R Y GY KG + + + +R SM K S
Sbjct: 432 IQEACNQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTF 491
Query: 494 TKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
L+V+ S + L++ L++LLS GI +E F + + +I + A
Sbjct: 492 NALEVVTTSNPPRRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVA 551
Query: 553 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGC 612
++ N + +L+ P EP L L ++ +L+ R+ + +MG
Sbjct: 552 LNYGEMDDQNAAQMILVG--IPLDEPHLKNHLSILLKTEKNDLKA-GRLPVTESYYLMGT 608
Query: 613 LDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 672
+D T L +V V + Q+ GE V+V +NP LH GD+
Sbjct: 609 VDPTGELKEDEVCVILESG---QISGE------------------VLVYRNPGLHFGDIH 647
Query: 673 VLKAVNVPALHHMVD----CVVFPQKGMR 697
+LKA V AL V V FPQKG R
Sbjct: 648 ILKATYVKALEEYVGNSKYAVFFPQKGPR 676
>gi|358392113|gb|EHK41517.1| hypothetical protein TRIATDRAFT_321718 [Trichoderma atroviride IMI
206040]
Length = 1316
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 152/375 (40%), Gaps = 60/375 (16%)
Query: 366 SRYGLTAAEIREWMGNFREIRN----VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKI 421
+R + +++ W + RN V K +RL S S + T+ + +I I
Sbjct: 548 NRKKMKISDLLRWAISIDNKRNAEQPVTKLFSRLALSLSRTWPTVQLERHQIRI---RTK 604
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK-- 479
++G K V +DGIG++SA A+KVA GL D PS FQ R G KG+ D S
Sbjct: 605 DLGTGKMVMNDGIGRISASLAKKVAELLGLTDC-PSCFQGRLGSAKGMWLIDVDSEGDFE 663
Query: 480 -------LSLRDSMRKYESELTK-----LDVLAW-SKYQPCFLNRQLISLLSTL----GI 522
+ + S RK+E + L++ W ++ + LN+Q I +L G+
Sbjct: 664 EDFEKDWVEIYPSQRKWECDFKDVHHRTLEIRNWPAELKSASLNQQFIPVLEARSKDSGL 723
Query: 523 WDEIFEKKQREAVRQLDAILTDPLKAQEALEL----MSPGENTNILKE------------ 566
+ + A+ TD +K +L L P N +L
Sbjct: 724 MRRVMSSHLQRALHADLGEQTDAMKDTMSLRLWIHQSGPSRNDRLLDGSAEFLAGLPNNS 783
Query: 567 ------LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN 620
LL G+ +L + K L+TK I +P + D + TL
Sbjct: 784 ADKVAFLLDSGFDQKRLKYLKDAVLDIYQKKADTLKTKMNITVPCSAYVYMAADFSSTLE 843
Query: 621 YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 680
G+V + S Q+ G FS + + Q ++VA+ P P D++ ++ V+ P
Sbjct: 844 EGEVHLSFSTKF--QVEG----FSDT-----LLEQMDILVARAPAHLPSDIQRVRVVSRP 892
Query: 681 ALHHMVDCVVFPQKG 695
L + D ++F KG
Sbjct: 893 ELRRLKDVIIFSTKG 907
>gi|322695803|gb|EFY87605.1| Rnai Polymerase [Metarhizium acridum CQMa 102]
Length = 685
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 81/306 (26%), Positives = 133/306 (43%), Gaps = 57/306 (18%)
Query: 430 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKKLSLRDSMR 487
+DGIG++S A K+ASK GL + P AFQ R GG KG ++ +DP L D +
Sbjct: 1 MNDGIGRISKALAMKIASKLGLTE-LPCAFQARLGGAKGMWIIDSDPI----LGDGDWIV 55
Query: 488 KYESELT-----------KLDVLAWSKY-QPCFLNRQLISLLSTLGI-----WDEIFEKK 530
Y S++ +V WSK +P LN+Q I +L I D I
Sbjct: 56 TYASQIKWDCDHEDSHHRTFEVKEWSKEPRPASLNQQFIPVLEARAINPYKMRDTISAHL 115
Query: 531 QREAVRQLDAILT------------------DPLKAQEALELMS--PGENTNILKELLIC 570
+R + +L A T P ++ + P + ++ LL
Sbjct: 116 RRGLLEELAAQRTAMEDSAELRLWLQQGGGSKPEGLDNSMAFLGCLPRDPKKVMAVLLDS 175
Query: 571 GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISG 630
G+ P + +L + + + L+ K +I +P ++ +D + TL +V V S
Sbjct: 176 GFHPKSCKYLQDLFRDAARDRAAFLKAKMKICVPCSAYLLMVVDFSSTLEEDEVHVSFST 235
Query: 631 AGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 689
Q+ G F + +++G+ V+VA+ P P D++ +K V+ P L H+ D +
Sbjct: 236 KF--QVDG----FCDT------LLEGMDVLVARAPSHLPSDIQRVKVVSRPQLRHLKDVI 283
Query: 690 VFPQKG 695
VF KG
Sbjct: 284 VFSTKG 289
>gi|296417840|ref|XP_002838558.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634502|emb|CAZ82749.1| unnamed protein product [Tuber melanosporum]
Length = 1700
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/373 (24%), Positives = 169/373 (45%), Gaps = 62/373 (16%)
Query: 387 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 446
V K+ +R+ FS++ + ++EI+ D+K G+ V +DG VS + +++
Sbjct: 996 TVPKFWSRISLGFSTAVPSFKFEPSQVEIVRDMKSTTGE---VMNDGCSVVSPKVMQEIR 1052
Query: 447 SKCGLKDNPPSAFQIRYGGYKGVVAADPT---SSKKLSLR--DSMRKYES-------ELT 494
L + P +A Q R GG KGV DP+ SS ++ ++ DS KY
Sbjct: 1053 RILDLHETP-TAVQARLGGAKGVWMIDPSIDWSSDEIFIKVTDSQLKYSGYADDQDWARM 1111
Query: 495 KLDVLAWS-KYQPCFLNRQLISLLSTLGI----WDEIFEKKQREAVRQLDAILTDPLKAQ 549
LD+L S + +P +N QLI +L G+ E+ E+ E + +L ++ P++ +
Sbjct: 1112 TLDILHISHEPRPATINIQLIPILENRGVPFQALKELTEEHLEEDLDELFQVIDKPVELR 1171
Query: 550 EAL-ELMSPGENTNILKELLICGYKPDAEPFLSMMLQT----FRASKLL----------- 593
+ + S G + + G P + ++++L R+ ++L
Sbjct: 1172 KWIYNRGSVGRARISFNGIQVTGSMPSTKHEMAILLLESGFLVRSCRVLMDHVRVMIDQY 1231
Query: 594 --ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQR 651
EL+ K I IP+ +++ D T TL G+V ++ S + R+
Sbjct: 1232 CEELKEKLHIRIPHSTTLLCVADPTGTLREGEVSLRFS----------NGFLDPKTLRRT 1281
Query: 652 FIVQGLVVVAKNPCLHPGDVRVLKAVNVP-----ALHHMVDCVVFPQKGMRYILTML--- 703
++ G ++VA+NP P D++ +KAV++ AL + D +VF +G + + ++L
Sbjct: 1282 QVITGDILVARNPAHIPSDIQKVKAVDIQPYHSLALRELQDVIVFSTQGDQSLASLLSGG 1341
Query: 704 -----KPRLLWYE 711
KP + W E
Sbjct: 1342 DYDGDKPWVCWEE 1354
>gi|290988454|ref|XP_002676936.1| predicted protein [Naegleria gruberi]
gi|284090541|gb|EFC44192.1| predicted protein [Naegleria gruberi]
Length = 1745
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 82/336 (24%), Positives = 139/336 (41%), Gaps = 77/336 (22%)
Query: 407 SVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC----------------- 449
++++ E ++I DV + F+DG G +S + AR++ K
Sbjct: 478 TINISEYQVIEDVGL--------FTDGCGFISPDLAREIYRKIKQAESREKVHVFENAQY 529
Query: 450 ----------------GLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYE--- 490
+ DN PSAFQIR+ G KG++ +P + K + LR+SM K+
Sbjct: 530 MVDVQMIYQDSDPVEDDMDDNVPSAFQIRFRGAKGMLLQNP-NVKGIVLRESMVKFNVDL 588
Query: 491 --------SELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI 541
L+ + V+ +S+ F N ++ ++S E FE +
Sbjct: 589 DEDLDEEDESLSNIHVVGYSEPSNFAFANSTILYMMSGCVDGGEKFEGIIMNMWKDYVND 648
Query: 542 LTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRI 601
+ ++ +LM L I G D L+ + FR ++LL L+ +
Sbjct: 649 ILKTYSNEDTSQLMKKYFKEGDFHALNIFGLTKDVA--LAFLAGPFR-TQLLNLK----L 701
Query: 602 FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVA 661
I N R + G D L +VFV+I R G ++G + +
Sbjct: 702 PIQNARRVYGVCDPLEVLEPDEVFVRI-----RMEDGTLK-----------TLEGTIAIT 745
Query: 662 KNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
K PCLH GD+R+LKA + +L ++ + +VFP KG +
Sbjct: 746 KEPCLHRGDLRLLKAKKIESLEYLSEVIVFPIKGEK 781
>gi|125590670|gb|EAZ31020.1| hypothetical protein OsJ_15103 [Oryza sativa Japonica Group]
Length = 352
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 59/223 (26%), Positives = 108/223 (48%), Gaps = 12/223 (5%)
Query: 8 WRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLIQLLGA 67
W GV V G R+++ L H + Y+LE+ +E++ + L C M +L+QL A
Sbjct: 130 WDGVRAEVIPG--KRRVDLYLEHDSQRYKLEVLFEDMKDC-LGCTLDGMGA-ILLQLNYA 185
Query: 68 PRIFQKGIRSPDL--LYESPVFNFFKEVPDDQWVRTTDFTPSNFIGQSTGLCMELPYRLE 125
PRI I P + + F+ KE WVR DFTP+ G+ + L ++L
Sbjct: 186 PRI-HTAISGPAVNSRFMDDRFHACKEDAKFSWVRALDFTPNYSFGRCSTLVLKLGKSAL 244
Query: 126 LPDFKENFAYYKESEDRFVLETGSAYSRSLDLVPIVGPPDGIALPYEILFKINLLVQNGC 185
+ D ++ + + + + S ++VP+V P ++PYE+LF++N L+ G
Sbjct: 245 VSDILKSLPFSGNLGE-LTMNSMDGVGASSNVVPLVHCPRDYSVPYEVLFRLNSLMHMGK 303
Query: 186 VAGPLLDSNFYRLVDPYRAPVSISCIEHALDKLYHLKECCYEP 228
+ ++++ ++ + PV +S +K++ L+ CY P
Sbjct: 304 IVAKHVNADLFKALQ--ELPVDVS--RRIFEKMHKLESTCYGP 342
>gi|400596583|gb|EJP64354.1| RNA dependent RNA polymerase [Beauveria bassiana ARSEF 2860]
Length = 527
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 2/111 (1%)
Query: 595 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR--SRQRF 652
++ K RI I +MGC+DET TL + + S + + + L S R +
Sbjct: 1 MKEKCRIQIEKSAFVMGCVDETGTLRGHSIQTEGSRGKNKAVLPQIFLQMSDRKYGNKTT 60
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
I+QG+ + +NP LH GD+RV++AV+ P L H+ D VVFP KG R + ++L
Sbjct: 61 IIQGVCFIGRNPSLHAGDIRVVEAVDTPCLRHLKDVVVFPSKGDRSLPSIL 111
>gi|297738765|emb|CBI28010.3| unnamed protein product [Vitis vinifera]
Length = 929
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 128/529 (24%), Positives = 215/529 (40%), Gaps = 89/529 (16%)
Query: 217 KLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVY-FCGP 275
KL +L +E W + RK++ + S D +++ V+P Y F GP
Sbjct: 136 KLKNLPMGVFETEVW-NNLGRKFIKEEDRQRS--FDWDSDKTHIYHCHVSPDGSYRFKGP 192
Query: 276 EINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTL 335
+N + L+ D +N L + F + D++ R S Y +I
Sbjct: 193 YLNKTRTHLQRVLGD-ENILLVKFAE---------DVTDRSSLNCSTDSNASYNKIA--- 239
Query: 336 RNGILIGDRKFEFLAFS-----------SSQLRESSAWMFASRY-GLTAAEIREWMGNFR 383
R GI +G R++ F F +S ++ +M +S G T E R +
Sbjct: 240 REGIFVGLRQYRFFVFKDGGKEEKKKNPTSSVKCYFVFMESSALSGKTVHEARCIFMHAH 299
Query: 384 EIRNVAKYAAR----LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY-------VFSD 432
+ +VAKY AR L ++ + +V++ I+ P + E G Y + +D
Sbjct: 300 MVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPG-RDEDGHVVYDEDWKPLILTD 358
Query: 433 GIGKVSAEFARKVASK-CGLK-----DNPPSAFQIRYGGYKGVVAADPTSSKKL-----S 481
G G +S + A + + C K ++ P Q R V ++KL
Sbjct: 359 GTGFISEDLALRCPNNLCRGKYMNNGNSDPLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQ 418
Query: 482 LRDSMRKYESELTKLDV-------LAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQR 532
+R SM K E++ D + + QP +L++ LI+LLS G+ +E F +
Sbjct: 419 IRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLSYGGVPNEYFMNLLK 478
Query: 533 EAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKL 592
+A+ ++ + +A + L + +I+ +++ G P EPFL L +
Sbjct: 479 DALEDAPSVQSSK-RAALRVSLRFGEMDDSIVTRMILSGI-PIDEPFLHHCLSFMVNEER 536
Query: 593 LELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF 652
LR ++ + + +MG D T TL +V + + HG+
Sbjct: 537 KGLRV-GKLPVNDCFYLMGTADPTGTLKSDEVCIILD-------HGQ------------- 575
Query: 653 IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMR 697
VQG V+V K+P LH GD+ VL A V AL V + FP KG R
Sbjct: 576 -VQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPR 623
>gi|358377627|gb|EHK15310.1| hypothetical protein TRIVIDRAFT_122493, partial [Trichoderma virens
Gv29-8]
Length = 1284
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 86/354 (24%), Positives = 146/354 (41%), Gaps = 54/354 (15%)
Query: 388 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
V K +RL S S + T + +D+ +II + ++ K V +DGIG++S A+KV
Sbjct: 550 VTKLFSRLALSLSRTWPT--ILLDDHQIIRKRR-DLKPGKMVMNDGIGRISPSLAKKVTE 606
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRD------SMRKYESELTK-----L 496
GL D P S FQ R G KG+ D S++ S RD S RK+E + L
Sbjct: 607 ALGLSDCP-SCFQGRLGSAKGMWLID-VDSEEDSERDWVEVYPSQRKWECDYDDPHHRTL 664
Query: 497 DVLAW-SKYQPCFLNRQLISLLSTLG--------IWDEIFEKKQREAVRQLDAILTDPLK 547
++ W S+ + LN+Q I +L + E ++ + + A + +P+
Sbjct: 665 EIRNWPSELKSASLNQQFIPVLEARSPQPDAMRRVISEHLQRALHADLGEQAAAMKEPMS 724
Query: 548 AQEALELMSPGENTNILKE------------------LLICGYKPDAEPFLSMMLQTFRA 589
+ + P +N L LL G+ +L ++
Sbjct: 725 LRLWIHQSGPSKNDRSLDGSAKFLAGLPDSGADKVAFLLDSGFDQRRMKYLKELVWDMCK 784
Query: 590 SKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR 649
K L+TK I IP + D + TL G+V + S + F +
Sbjct: 785 KKADTLKTKMNITIPCSAYIYMAADFSSTLEEGEVHLSFS-----------TKFQAEGFS 833
Query: 650 QRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
+ ++VA+ P P D++ ++ V+ P L + D ++F KG + + ML
Sbjct: 834 DTLLEHMDILVARAPAHFPSDIQRVRVVSRPELRKLKDVIIFSTKGDKPLADML 887
>gi|42569168|ref|NP_179583.3| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967572|sp|O82188.2|RDR5_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 5;
Short=AtRDRP5; AltName: Full=RNA-directed RNA polymerase
5
gi|330251850|gb|AEC06944.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 977
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 131/515 (25%), Positives = 200/515 (38%), Gaps = 111/515 (21%)
Query: 254 DDGLVYVHRVQVTPSRVY-------FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDK 306
D G + ++ V P+ Y GP + + L D DN L + F D
Sbjct: 198 DSGKTHYYQCNVAPNGSYTFKVLSALQGPLLEHTGTHLHKVLGD-DNVLTVKFADVQ--- 253
Query: 307 IHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF------------SSS 354
+ SS I Y I +NGI+IG R+++F F S+
Sbjct: 254 --------KSSSTYSIDHYFTYKGIA---KNGIMIGLRRYQFFVFKDGGKEEKKKDLSTK 302
Query: 355 QLR------ESSAWM-FASRYGLTAAEIREWMGNFREIR---NVAKYAARLGQSFSSSKE 404
+++ +S+A+ + Y LT I E +F + +A Y AR S +K
Sbjct: 303 KVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLANYMARFSLILSKTK- 361
Query: 405 TLSVHM-----DEIEII----PDVKIEIGKTKY--VFSDGIGKVSAEFARKV-----ASK 448
TL V M D+I+ I D K + K K + SDG G +S + AR K
Sbjct: 362 TLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYISEDLARMCPLNIFKGK 421
Query: 449 C--------GLKDNPPSAFQIR--YGGY--KGVVAADPT-SSKKLSLRDSMRKYE----- 490
C +PP Q R Y GY KG + + + +R SM K
Sbjct: 422 CLRSESIQEACYQDPPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSL 481
Query: 491 ---SELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPL 546
S L+V+ S + L++ L++LLS GI +E F + + +I +
Sbjct: 482 SNFSTFNALEVVTTSNPPKRTKLSKNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKR 541
Query: 547 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNG 606
A A ++ N + +L+ P EP L L ++ +L+ ++ +
Sbjct: 542 AALNAALNYGEMDDQNAAQMILVG--IPLDEPHLKNYLSILLKTEKNDLKA-GKLPVTES 598
Query: 607 RSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCL 666
+MG +D T L +V V + Q+ GE V+V +NP L
Sbjct: 599 YYLMGTVDPTGALKEDEVCVILESG---QISGE------------------VLVYRNPGL 637
Query: 667 HPGDVRVLKAVNVPALHHMVD----CVVFPQKGMR 697
H GD+ +LKA V AL V V FPQKG R
Sbjct: 638 HFGDIHILKATYVKALEEYVGNSKFAVFFPQKGPR 672
>gi|345568648|gb|EGX51541.1| hypothetical protein AOL_s00054g240 [Arthrobotrys oligospora ATCC
24927]
Length = 1615
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 93/357 (26%), Positives = 149/357 (41%), Gaps = 76/357 (21%)
Query: 390 KYAARLGQSFSSSKETLSVHMDEIEI-IPDVK---IEIGKT----KYVFSDGIGKVSAEF 441
K AR+ FS++ ++ +EI+ I D+K +E+G+ +Y +DG G S
Sbjct: 861 KLYARIALGFSTTTPSVVFDKNEIDYSIKDIKAKGLELGRDGKLPEYSLTDGCGLASPAV 920
Query: 442 ARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-----TSSKKLSLRDSMRKY-----ES 491
R VA + GL PPSA Q R G KG+ DP + ++ +R K+ E
Sbjct: 921 FRAVARQLGLP-YPPSAVQARIGAAKGLWIMDPSIPLDSEELRIRIRPDQNKFDGISLEP 979
Query: 492 ELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
E LD+ SK +P LN Q I +L G+ + E+ RE +R E
Sbjct: 980 EHRTLDICNTSKPLKPSALNLQFIVILLHNGVTEATLEQLLREDIR------------NE 1027
Query: 551 ALELMSPG--ENTNILKELL----ICGYKPDAEPF---------------------LSMM 583
EL + G ++ L++ L + G + D ++
Sbjct: 1028 VTELFNGGRLDDGAFLRKYLERVKLSGSQRDGRAIAMKGRIPLGLAERAIDLINAGFTLQ 1087
Query: 584 LQTFRA--SKLL-----ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 636
QT + K+L L+ K RI IP D + L GQV+++
Sbjct: 1088 NQTLKDWFEKVLTDHCDTLKDKMRIRIPWSCQPYCVPDPSGKLKKGQVYLRF-------- 1139
Query: 637 HGESSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFP 692
G S F ++ +++G V+V +NP D++ + AV+VP L + D +VFP
Sbjct: 1140 -GPESKFIDPKTMMAIDVLRGGVLVGRNPAHFASDIQKVTAVDVPELRFLTDVIVFP 1195
>gi|167405748|gb|ABZ79701.1| RNA-dependent RNA polymerase [Solanum lycopersicum]
Length = 163
Score = 74.3 bits (181), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 1/68 (1%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
KFAVL V++ FG G++K F LS +Y+L+L YENIW++ LH P Q ++LLI
Sbjct: 97 KFAVL-GSTEVSIQFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLI 155
Query: 63 QLLGAPRI 70
QL GAPRI
Sbjct: 156 QLFGAPRI 163
>gi|405952890|gb|EKC20647.1| Putative RNA-dependent RNA polymerase 2 [Crassostrea gigas]
Length = 266
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/102 (43%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 456 PSAFQIRYGGYKGVVAADPT---SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQ 512
PSAFQIR+GG KG+VA DPT + L +R SM+K+ES+ L++L + +LN+Q
Sbjct: 136 PSAFQIRFGGCKGMVAQDPTLGNDTDILVIRKSMKKFESKSNNLEILDVTGPGRLYLNKQ 195
Query: 513 LISLLSTLGIWDEIFEKKQREAVRQL-DAILTDPLKAQEALE 553
+I+LLS LGI D +F Q + + D +L D L LE
Sbjct: 196 VITLLSGLGIQDHVFLNLQENMLVDIADILLYDHLALPALLE 237
>gi|452002294|gb|EMD94752.1| hypothetical protein COCHEDRAFT_1201293 [Cochliobolus heterostrophus
C5]
Length = 1666
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 135/312 (43%), Gaps = 57/312 (18%)
Query: 427 KYVFSDGIGKVSAEFARKV----ASKCGLKDNPPSAFQIRYGGYKGV-------VAADPT 475
+ V DG +S A+K+ G+ D PSAFQ R GG KG+ +PT
Sbjct: 982 RTVMDDGCCVMSVGAAKKIWDLYTKATGVTDPLPSAFQGRIGGAKGIWVINAERFTKEPT 1041
Query: 476 SSKK-LSLRDSMRKYESELTK------LDVLAWSKY-QPCFLNRQLISLLSTLG-----I 522
+ + + DS K+E + +VL +S P L+ I +L+ G I
Sbjct: 1042 HLEPWIMINDSQWKFEPPNDQSPYHRTFEVLNYSSTPSPSELHSLFIPILADRGVPKEAI 1101
Query: 523 WDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE---------------- 566
D +F+ ++E + L+ +L D K E + G NT + +E
Sbjct: 1102 SDLMFDSLEKERMNLLN-VLQDTTKVHEWV--YRNGANTKLREETPGRAGQPASLEEKVL 1158
Query: 567 -LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
LL G+ P P+L+ L++F S+ + K R+ +P + G D LN G++
Sbjct: 1159 NLLESGFDPLKFPYLAQNLESFILSRQIFQEAKLRVLLPKSTFLYGVADPKGVLNPGEIQ 1218
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFI-VQGL-VVVAKNPCLHPGDVRVLKAVNVPALH 683
V S F + +R++ ++ L V+VA++P D++ ++ V P L
Sbjct: 1219 VLFSWP-----------FLDETTNERYLELRDLNVLVARHPACRRSDIQKVRTVIHPELS 1267
Query: 684 HMVDCVVFPQKG 695
H+VD VF KG
Sbjct: 1268 HLVDVAVFSSKG 1279
>gi|347841952|emb|CCD56524.1| hypothetical protein [Botryotinia fuckeliana]
Length = 461
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 43/55 (78%)
Query: 648 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
+ Q +++G+ +V +NP LHPGD+RV++AVN+PALHH+ D VVFPQ G R + +M
Sbjct: 35 TTQYNVIEGICLVGRNPSLHPGDLRVVQAVNIPALHHLRDVVVFPQSGERDVPSM 89
>gi|310799490|gb|EFQ34383.1| RNA-directed RNA polymerase [Glomerella graminicola M1.001]
Length = 1348
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 153/369 (41%), Gaps = 57/369 (15%)
Query: 367 RYGLTAAEIREWMGNF--REIRNVAKYAARLGQSFSSSKETLSVHMDEIEII-PDVKIEI 423
R L+ + +W+ F + + K +R+ S + + + D+I I D+ I
Sbjct: 596 RMKLSIYRMLDWLLQFDRNQEQPYLKLFSRIQLGLSKTTPIIVLGRDQIRIQDQDMCSPI 655
Query: 424 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---L 480
GK V +DGIG++S ARK GL D P SA Q R G KG+ D K L
Sbjct: 656 GK---VMNDGIGRMSRSLARKTRDVLGLSDIP-SAIQGRIGPAKGMWLIDIADDKGDLWL 711
Query: 481 SLRDSMRKY-----ESELTKLDVLAWSKYQ-PCFLNRQLISLLSTLGIWDE--------- 525
L S RK+ + E L+V A +K LN Q + +L I E
Sbjct: 712 ELWPSQRKWNCDFGDPEHRTLEVRAHAKDPGSACLNIQFLPVLEDRAINKEAMREVIGKS 771
Query: 526 IFEKKQREAVRQLDAILTDPLKAQEALELMS------------------PGENTNILKEL 567
+ ++ R+ Q DA + PL+ ++ + S P N I+ L
Sbjct: 772 LVDELNRQLEEQKDA-MKYPLQFRQWISQTSSTRTQRLAHGHVPYMGGLPESNEEIMNSL 830
Query: 568 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 627
+ G+ P + +L + R S L+ K I + N + +D L G+V +
Sbjct: 831 IDAGFDPRRQRYLQELAWNLRYSLCESLKKKMSIKVSNSAYLFMVVDFWNVLEEGEVHLC 890
Query: 628 ISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMV 686
S ++ FS S I+ G V+VA++P D++ +KAV P LH +
Sbjct: 891 FSS------KFQTDTFSDS------ILHGCDVLVARSPAHFVSDIQRVKAVFKPELHTIK 938
Query: 687 DCVVFPQKG 695
D +VF KG
Sbjct: 939 DVIVFSAKG 947
>gi|391343490|ref|XP_003746042.1| PREDICTED: uncharacterized protein LOC100901929 [Metaseiulus
occidentalis]
Length = 1356
Score = 72.0 bits (175), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 155/372 (41%), Gaps = 53/372 (14%)
Query: 344 RKFEFLAFSSSQLRESSAWMFASRYGLT--AAEIREWMGNFREIRNVAKYAARLGQSFSS 401
+ + FL S SQ + S W +A G T + +RE +G N+A+ A F+
Sbjct: 457 KTYYFLGNSKSQAEDFSFWAYAIEKGDTDTISSVRERLGI---TGNLARRIAVQDLVFAE 513
Query: 402 SKETLSVH----MDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPS 457
+ +S+ +E E +P F GIG++S R V C S
Sbjct: 514 ALGAVSIDPSWVSEESEDVPAASD--------FKHGIGRISEAALRTVVENCHWSRTLCS 565
Query: 458 AFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISL 516
A ++ +GG +G + DP+ ++ R S +SE + L ++ S+ + +R IS
Sbjct: 566 AIRVVHGGRRGTLVYDPSLEGSRIIYRKSQTVIKSEDSTLYLIERSEIKNAAFDRTFIST 625
Query: 517 LSTL--GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL-----I 569
LS+ G+ +E + + L +LT+PL + +L + +
Sbjct: 626 LSSKADGLTEEF---SVEDFLTPLYELLTEPLSLYSTGARVKRVAAEPVLDHIFREGEDL 682
Query: 570 CGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 627
GY + + Q R L LR K + + N +M +DE L G+VF+Q
Sbjct: 683 YGYDKRGD---GLFRQAVRCKALKALRDLKKLKQHMTNAYEIMPVVDELELLEEGEVFIQ 739
Query: 628 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP----ALH 683
+ G G+ + S G +V+A+ +H + R + AVN P AL
Sbjct: 740 VCSPG-----GDLRVLS-----------GDLVLARKDAMHLEEFRRVTAVNRPDVVGALG 783
Query: 684 HMVDCVVFPQKG 695
H+ +CVV P KG
Sbjct: 784 HLFNCVVLPSKG 795
>gi|340515396|gb|EGR45650.1| predicted protein [Trichoderma reesei QM6a]
Length = 989
Score = 71.6 bits (174), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/344 (24%), Positives = 146/344 (42%), Gaps = 53/344 (15%)
Query: 388 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS 447
+AK +RL S S + T+ + ++I ++ +E K V +DGIG++S A+KVA
Sbjct: 256 IAKLFSRLALSLSRTWPTVVLEKEQI-LVRRKDLEREK---VMNDGIGRISPSLAKKVAD 311
Query: 448 KCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK---LSLRDSMRKYESELTK-----LDVL 499
GL D PS FQ R G KG+ D S + + + S K+E + L++
Sbjct: 312 ALGLSDC-PSCFQGRLGSAKGMWLIDVDSDDERDWVEIYPSQTKWECDFDDPHHRTLEIR 370
Query: 500 AW-SKYQPCFLNRQLISLLSTLG--------IWDEIFEKKQREAVRQLDAILTDPLKAQE 550
W S+ + LN+Q I +L + E E+ + + A + +P+ +
Sbjct: 371 NWPSELKSASLNQQFIPILEAQSPEPDGMRRVMAEHLERALHADLGEQVAAMKEPMSLRL 430
Query: 551 ALELMSPGENTNILKE------------------LLICGYKPDAEPFLSMMLQTFRASKL 592
+ P +N +L LL G+ +L ++ K
Sbjct: 431 WIHQSGPSKNDRLLDGSTKFLAGLPDSNADKVAFLLDSGFDQKKMKYLQDIVWDMCKRKA 490
Query: 593 LELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF 652
L+TK I +P + D T TL +V + S ++ FS +
Sbjct: 491 DVLKTKMNITVPCSAYIYMAADFTSTLEEDEVHLSFS------TKFQADGFSDT------ 538
Query: 653 IVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
+++G+ ++VA+ P P D++ +K V+ P L + D ++F KG
Sbjct: 539 LLEGMDILVARVPAHLPSDIQRVKVVSRPELRKLKDVIIFSTKG 582
>gi|361130100|gb|EHL01954.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 263
Score = 70.1 bits (170), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Query: 547 KAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELR--TKTRIFIP 604
K A ++ + +++LI G++ +P L+ ++ + +++ R + RI IP
Sbjct: 73 KQTSAFRFLTYTNKPELAEKVLIDGFET-VQPTLTKLVNS-EYDRMINKRDEQRCRILIP 130
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKN 663
R + G D L G+ V+++ G Q + ++G+ V+V +N
Sbjct: 131 KSRLLFGICDAWGVLKEGECAVKVTMDG---------------DGQPYTLKGMDVLVTRN 175
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
PCLHPGD++ KAV L H+VDC+VFP +G R
Sbjct: 176 PCLHPGDLQKFKAVERDELAHLVDCIVFPTRGAR 209
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 406 LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVAS--KCGLKDN--PPSAFQI 461
++++ + IPD++ + YVF+DG G +S AR+++ + ++ PS FQI
Sbjct: 1 MTLNPSRCQDIPDIEAQ----DYVFTDGCGLISKHLARELSRVLRVAFRNTRYTPSVFQI 56
Query: 462 RYGGYKGVVAADPTSSKKLS 481
RY GYKGV+ DP K+ S
Sbjct: 57 RYRGYKGVLMLDPGMEKQTS 76
>gi|367029127|ref|XP_003663847.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
gi|347011117|gb|AEO58602.1| hypothetical protein MYCTH_2306054 [Myceliophthora thermophila ATCC
42464]
Length = 1364
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 134/333 (40%), Gaps = 51/333 (15%)
Query: 402 SKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQI 461
SK T +V + +II + + TK + +DGIG++S ARK+ GL D P SA Q
Sbjct: 640 SKTTPTVTFEPGQIIHRPEDILSPTKKIMNDGIGRMSRSVARKIRDLLGLTDIP-SAVQG 698
Query: 462 RYGGYKGVVAADPT------------SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFL 509
R G KG+ D T S +K + D+ + L V S+ +P L
Sbjct: 699 RIGSAKGMWLMDVTDHGDADWIETYPSQRKWNCDDADEPFHRTLEVRKVA--SELKPASL 756
Query: 510 NRQLISLLSTLGIWDE-----IFEKKQREAVRQLD---AILTDPLKAQEALELMS----- 556
N Q + +L + + I + + +Q + L PL+ ++ + S
Sbjct: 757 NLQFLPVLEDRAVDKKAMRCAISNRLLNDLAKQFEDQKTALKRPLQFRQWVHENSNNNRP 816
Query: 557 --------------PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIF 602
P + IL L+ G+ P ++ +L + + K LRTK I
Sbjct: 817 ERVKHGQVPFLGGLPADKNEILALLMNSGFDPKSQRYLRDLAWELQKQKCDTLRTKLNIK 876
Query: 603 IPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
+ + +D L +V V S +L G S + V+VA+
Sbjct: 877 VGRSAYIYMVVDFWGVLEENEVHVGFSSKFRDELDGVSYTL---------LADCDVLVAR 927
Query: 663 NPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
+P D++ ++AV P LH + D +VF KG
Sbjct: 928 SPAHFVSDIQKVRAVFKPELHALKDVIVFSTKG 960
>gi|384493387|gb|EIE83878.1| hypothetical protein RO3G_08583 [Rhizopus delemar RA 99-880]
Length = 1222
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 133/312 (42%), Gaps = 52/312 (16%)
Query: 256 GLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPR 315
+VY + P R+ P+I SNR+ R F +D FL I+
Sbjct: 318 AIVYYKTINHKP-RISLRPPKIAASNRLFRKFGQD--RFLEIT----------------- 357
Query: 316 GSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASR----YGLT 371
S+A + R + +L+ R F FL +++++ FA+ ++
Sbjct: 358 TSNACSPSMIRHFKDFY---MKPLLLMQRVFRFLF-----IKDATLVFFATEGIDLEPIS 409
Query: 372 AAEIREWMGNFREI--RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGK-TKY 428
++ +W E ++KY +R+ +SSS T+ D+IE I DV + K +
Sbjct: 410 IQQVIDWHLPITENWGMTMSKYVSRMSLGYSSSIPTIQFEPDQIEYIDDVYSKTAKGSAA 469
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP----TSSKKLSLRD 484
+DG G +S +++ C D P A Q R GG KG+ P S K + +R
Sbjct: 470 CMTDGCGIISCAAMKEIMG-CQTTDELPCAVQGRIGGAKGIWIISPDLDFNSGKYIKIRK 528
Query: 485 SMRKYESELTKLDV-LAWSKYQ-----------PCFLNRQLISLLSTLGIWDEIFEKKQR 532
S K+++ L + ++ L Y P FLN Q I +L+ G+ E+F +
Sbjct: 529 SQNKFKTGLPQSNLRLDPHHYTFDLVKNSICVYPSFLNTQFIQVLAAGGVPTEVFNDILK 588
Query: 533 EAVRQLDAILTD 544
E + ++ ++T+
Sbjct: 589 EYIHRIAIVITE 600
Score = 47.8 bits (112), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 595 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 654
+ TK ++ + ++ D T TL +VF+Q+S R++ + + + ++
Sbjct: 728 VNTKYKVEVAQSCTVTCIPDPTGTLEPDEVFLQLST---RKVDERTGVCAG-------LI 777
Query: 655 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
G V+V +NPC DV+ +KAV+ PAL D ++F KG
Sbjct: 778 TGDVIVTRNPCGLKSDVQKVKAVDCPALRMYTDLIIFSVKG 818
>gi|169598368|ref|XP_001792607.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
gi|111069078|gb|EAT90198.1| hypothetical protein SNOG_01986 [Phaeosphaeria nodorum SN15]
Length = 1428
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 146/385 (37%), Gaps = 95/385 (24%)
Query: 386 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVK-----------------IEIGKTKY 428
+N K ARL S + TLS +I +PD E
Sbjct: 684 QNFCKAFARLDLGLSRTIPTLSFKPSQIRRMPDTYADRTPEAQEFNDATLDWTEQYDRTP 743
Query: 429 VFSDGIGKVSAEFARKVASKC----GLKDNPPSAFQIRYGGYKGV--VAADPTSSKK--- 479
V +DG +VS A + C G + PS Q R GG KG+ ++A+P +
Sbjct: 744 VMNDGCARVSVGAALLIWKFCQDATGSDEPLPSTLQGRIGGAKGMWMISAEPHTRDPAHL 803
Query: 480 ---LSLRDSMRKYE-SELTKLDVLAWSKYQPCF-------------LNRQLISLLSTLGI 522
+ + DS K+E ++ + D ++ ++ F L+ I +L G+
Sbjct: 804 DIWIEVTDSQLKFEPAQEDQADDRPYNSHRLTFNYIKHSFVNGSSDLHISFIPILVDRGV 863
Query: 523 WDEIFEK----KQREAVRQLDAILTDPLKA-------------------QEALELMSPGE 559
K + + +QL +L DP++ Q AL L P +
Sbjct: 864 QKSTIAKLMISRLDDERKQLLEMLDDPVRLHNWVTKQGSATPALGILPWQAALPLTLPEK 923
Query: 560 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 619
K LL G++P PFL+ L+ F + L + K R + ++G D L
Sbjct: 924 ----AKLLLRTGFQPYQSPFLARTLKRFVQQRQLWMEEKLRAPLGRATYLIGLADPLGIL 979
Query: 620 NYGQVFVQISGA--------GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 671
G+V VQ S YR L GE VV+ + P D+
Sbjct: 980 KPGEVHVQFSKPFLDEYGRNTYRNLAGEE-----------------VVITRQPACRRSDM 1022
Query: 672 RVLKAVNVPALHHMVDCVVFPQKGM 696
+ ++AV+ P L H+VD VVF +G+
Sbjct: 1023 QKMRAVSHPQLSHLVDVVVFSSRGI 1047
>gi|156374435|ref|XP_001629812.1| predicted protein [Nematostella vectensis]
gi|156216821|gb|EDO37749.1| predicted protein [Nematostella vectensis]
Length = 110
Score = 68.2 bits (165), Expect = 2e-08, Method: Composition-based stats.
Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
Query: 596 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 655
+T+ R+ +P R + G D L G+ + + S+F F
Sbjct: 1 KTRLRVLVPKSRMVFGVCDPYEVLRQGECYFR------------PSIFDEDEGD--FQAA 46
Query: 656 GLVVVAKNPCLHPGDVRVLKAV-NVPALHHMVDCVVFPQKGMR 697
V V +NPC HPGDVRVLK V N P L+H+ DC+VFP +G R
Sbjct: 47 NKVAVIRNPCYHPGDVRVLKLVRNKPELNHLRDCIVFPVRGRR 89
>gi|225445110|ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis
vinifera]
Length = 943
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 127/543 (23%), Positives = 212/543 (39%), Gaps = 103/543 (18%)
Query: 217 KLYHLKECCYEPSRWLTDQYRKYMTSRSKPSSPAISLDDGLVYVHRVQVTPSRVY----- 271
KL +L +E W + RK++ + S D +++ V+P Y
Sbjct: 136 KLKNLPMGVFETEVW-NNLGRKFIKEEDRQRS--FDWDSDKTHIYHCHVSPDGSYRFKVC 192
Query: 272 ----FCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRI 327
GP +N + L+ D +N L + F + D++ R S
Sbjct: 193 ISSSLNGPYLNKTRTHLQRVLGD-ENILLVKFAE---------DVTDRSSLNCSTDSNAS 242
Query: 328 YTRILSTLRNGILIGDRKFEFLAFS-----------SSQLRESSAWMFASRY-GLTAAEI 375
Y +I R GI +G R++ F F +S ++ +M +S G T E
Sbjct: 243 YNKIA---REGIFVGLRQYRFFVFKDGGKEEKKKNPTSSVKCYFVFMESSALSGKTVHEA 299
Query: 376 REWMGNFREIRNVAKYAAR----LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY--- 428
R + + +VAKY AR L ++ + +V++ I+ P + E G Y
Sbjct: 300 RCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPG-RDEDGHVVYDED 358
Query: 429 ----VFSDGIGKVSAEFARKVASK-CGLK-----------DNPPSAFQIRYGGYKGVVAA 472
+ +DG G +S + A + + C K P Q R V
Sbjct: 359 WKPLILTDGTGFISEDLALRCPNNLCRGKYMNNGNSDVCDSRYPLLIQCRLFNNGCAVKG 418
Query: 473 DPTSSKKL-----SLRDSMRKYESELTKLDV-------LAWSKYQP--CFLNRQLISLLS 518
++KL +R SM K E++ D + + QP +L++ LI+LLS
Sbjct: 419 TLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEINGTSNQPRRSYLSKYLIALLS 478
Query: 519 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEP 578
G+ +E F ++A+ ++ + +A + L + +I+ +++ G P EP
Sbjct: 479 YGGVPNEYFMNLLKDALEDAPSVQSSK-RAALRVSLRFGEMDDSIVTRMILSGI-PIDEP 536
Query: 579 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 638
FL L + LR ++ + + +MG D T TL +V + + HG
Sbjct: 537 FLHHCLSFMVNEERKGLRV-GKLPVNDCFYLMGTADPTGTLKSDEVCIILD-------HG 588
Query: 639 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQK 694
+ VQG V+V K+P LH GD+ VL A V AL V + FP K
Sbjct: 589 Q--------------VQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIK 634
Query: 695 GMR 697
G R
Sbjct: 635 GPR 637
>gi|345562071|gb|EGX45143.1| hypothetical protein AOL_s00173g244 [Arthrobotrys oligospora ATCC
24927]
Length = 1092
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 149/340 (43%), Gaps = 47/340 (13%)
Query: 387 NVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 446
+ AKY AR+ FS T+ V ++ ++I + + + K+ +DG G + + +A
Sbjct: 368 STAKYNARIKLGFS---RTVLVPLENVQIKEEKDL-VSTIKFPMTDGCGTATFAVLKAIA 423
Query: 447 SKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELT-----KLDVLAW 501
K GL D PS FQIR+GG KG++ D +S SLR + RK + + ++V+ +
Sbjct: 424 EKMGL-DYVPSYFQIRHGGRKGLILLDVENSDSESLRITYRKTQIKFETRQDLNIEVVDY 482
Query: 502 SK-YQPCFLNRQLISLLSTLGIWDEIF-----EKKQREAVRQLDAILTDPLKAQEALELM 555
++ + + Q +++L G+ E E+ +++ + +L DP + +
Sbjct: 483 ARPLKRGKITSQFLTILHNGGVSKETLGNLAKEEIEKDGIWELLERAGDPSFVKNFYQSG 542
Query: 556 SPGENTNILKELLICGYKPDA--EPFLSMMLQTFRASKLLELR------TKTRI------ 601
+ + + G P + E + M+ F S+ L L+ K R+
Sbjct: 543 ALKKRRDKDGCFKYAGSMPASAEERIIQMVDAGFAVSECLVLKNLISGCNKNRLDSWNDL 602
Query: 602 --FIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVV 659
I S+ D + L G+VF+Q S G+ +F+ + + G V+
Sbjct: 603 KFTISESTSVKCAPDFKKVLREGEVFLQFSSDGF--------VFNDKLLK---FLSGKVL 651
Query: 660 VAKNPCLHPGDVRVLKAVNVP----ALHHMVDCVVFPQKG 695
V ++P D++ AV P A +VDC+VFP G
Sbjct: 652 VGRSPAYIASDIQSAIAVMNPEVLEAYGDLVDCIVFPIVG 691
>gi|451845380|gb|EMD58693.1| hypothetical protein COCSADRAFT_194603 [Cochliobolus sativus
ND90Pr]
Length = 1215
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 77/308 (25%), Positives = 126/308 (40%), Gaps = 53/308 (17%)
Query: 429 VFSDGIGKVSAEFARKV----ASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKKLSL 482
V DG +S A+K+ G+ D PSAFQ R GG KG V++A+ + L
Sbjct: 533 VMDDGCCVMSVGAAKKIWDLYTKATGVTDPLPSAFQGRIGGAKGIWVISAEKFTKDTDHL 592
Query: 483 RDSMRKYESELT------------KLDVLAWSKY-QPCFLNRQLISLLSTLGIWDE---- 525
+ ES+ +V +S P L+ I +L+ G+ E
Sbjct: 593 EPWIEINESQWKFQPPNDQSPYHRTFEVSNYSSTPSPSELHSSFIPILADRGVTKEAISD 652
Query: 526 -IFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKE-----------------L 567
+ + ++E + L+ +L D K E + G NT + +E L
Sbjct: 653 LMLDSLEKERINLLN-VLQDATKVHEWV--YRNGANTKLREETHGRVGQPASLKEKALNL 709
Query: 568 LICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 627
L G+ P P+L+ L++F S+ + K R+ +P + G D LN G++ +
Sbjct: 710 LESGFDPLKFPYLAQNLESFIMSRQIFQEAKLRVLLPKSTFLYGVADPLGVLNPGEIQIL 769
Query: 628 ISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD 687
S + E +S R + V+VA+ P D++ ++ V P L H+VD
Sbjct: 770 FSWPFVDETTNER--YSDLRDLE-------VLVARQPACRRSDIQKVRTVIHPELSHLVD 820
Query: 688 CVVFPQKG 695
VF KG
Sbjct: 821 VAVFSSKG 828
>gi|342881586|gb|EGU82475.1| hypothetical protein FOXB_07061 [Fusarium oxysporum Fo5176]
Length = 1387
Score = 67.8 bits (164), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 51/315 (16%)
Query: 425 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRD 484
K + DGIG+VS AR++A+ GL + P AFQ R G KG+ D L D
Sbjct: 705 KEQKDMGDGIGRVSRNLARRIATHMGLLET-PCAFQARIGSAKGMWIVD-VEDDGLDNDD 762
Query: 485 ------SMRKYESELTKL-----DVLAWSK-YQPCFLNRQLISLLSTLG---------IW 523
S RK+ + + +V WS+ + LN Q I +L I
Sbjct: 763 WIETYPSQRKWNCDFEDVHHRTFEVREWSRELRSAALNTQFIPVLEAQAPVPQDMRNVIS 822
Query: 524 DEIFEKKQREAVRQLDAILTDPLK----AQEALELMS----------PGENTNILKELLI 569
+ Q E QL A +T P + + P +I+ +L
Sbjct: 823 RHLTNGLQEEIGGQL-AAMTHPTNLRGFTHRGFDRATLGNVPFVGALPEREEDIISYMLD 881
Query: 570 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 629
G+ FL M+ + + +L+ K I IP +D T TL G+ VQ++
Sbjct: 882 AGFDATKCRFLRDMVWNNQKRQADQLKAKMNIKIPRSTYAFMTVDFTGTLEEGE--VQLA 939
Query: 630 GAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 688
+ Q GES ++ G+ ++VA+ P D++ +KAV P L + D
Sbjct: 940 FSSKFQADGESDT----------LLDGIDILVARAPAHFVSDIQKVKAVFRPNLKRLKDV 989
Query: 689 VVFPQKGMRYILTML 703
+VF KG + ML
Sbjct: 990 IVFSSKGKSPLADML 1004
>gi|258570921|ref|XP_002544264.1| predicted protein [Uncinocarpus reesii 1704]
gi|237904534|gb|EEP78935.1| predicted protein [Uncinocarpus reesii 1704]
Length = 1348
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 125/334 (37%), Gaps = 68/334 (20%)
Query: 416 IPDVKIEIGK------TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG- 468
IP V + G+ + V +DG +SA A ++ S GLKD PS FQ R G KG
Sbjct: 668 IPTVVVRPGRIVRRKDAEIVMNDGCALMSASLANEIKSCLGLKDENPSCFQGRIAGAKGI 727
Query: 469 --VVAADPTSSKKLSLRDSMRKYESELTK-----------LDVLAWSK-YQPCFLNRQLI 514
V AD + + DS K + +K +V++WS+ +P LN QL+
Sbjct: 728 WMVDNADSNGDSWIEISDSQLKIKPHPSKCKIMLDDYQLTFEVVSWSRELRPVNLNVQLL 787
Query: 515 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS------------------ 556
+L G+ + + +E VR+ + K E++S
Sbjct: 788 MVLQHGGVQTD----RLKELVRRESSAWYADFKNTITNEIVSRGWIQKQGLYDRRKTRRI 843
Query: 557 ---PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL 613
P EN LL G+ P +L +L TF L + +I IP
Sbjct: 844 DDFPTENAEQAILLLDSGFHPLRLAYLKELLTTFLKDYCNRLDS-LKIRIPESTYAYCIA 902
Query: 614 DETRTLNYGQVFVQISGA----GYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 669
D L +V S GY L G V++ +NP P
Sbjct: 903 DPYEVLAEDEVHFGFSKPWESYGYTDLDGVD-----------------VLLGRNPAHLPN 945
Query: 670 DVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
D++ +AV L H D +VFP G + ML
Sbjct: 946 DIQKRRAVFKKELRHFKDVIVFPTVGKVPLAGML 979
>gi|324526384|gb|ADY48663.1| RNA-dependent RNA polymerase 2 [Ascaris suum]
Length = 156
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 77/157 (49%), Gaps = 33/157 (21%)
Query: 393 ARLGQSFSSSKETLSVHM------DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 446
AR+GQ F+ +KE S+ + +II ++ Y FSDG G++S EFA+++A
Sbjct: 2 ARMGQCFTQAKEC-SIKLLHRRYNKTFDIIGG--MDSSGEPYTFSDGCGRLSPEFAQRIA 58
Query: 447 SKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS-----------------------LR 483
L PS FQIR+ G KGVV+ DP +++ S R
Sbjct: 59 DDLHLGKCVPSCFQIRFRGIKGVVSVDPWLTERASWATEHNIADNMENYNKKNKLYMLFR 118
Query: 484 DSMRKYESELT-KLDVLAWSKYQPCFLNRQLISLLST 519
S K+ + L+ K++++ +S P LNR I++L T
Sbjct: 119 PSQDKFHAPLSHKIEIVKYSSPTPVCLNRPYIAILLT 155
>gi|156390354|ref|XP_001635236.1| predicted protein [Nematostella vectensis]
gi|156222327|gb|EDO43173.1| predicted protein [Nematostella vectensis]
Length = 127
Score = 66.6 bits (161), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 53/102 (51%), Gaps = 14/102 (13%)
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
+K RI +PN R + G D L YGQ +L+ R + + V
Sbjct: 18 SKLRILVPNSRVVFGVCDPFGELEYGQCVFH------------PTLYDEVRIAE-YQVAT 64
Query: 657 LVVVAKNPCLHPGDVRVLKAV-NVPALHHMVDCVVFPQKGMR 697
V+V +NPC +PGD+RVLK V N+P ++ DC+VFP KG R
Sbjct: 65 EVMVVRNPCYYPGDIRVLKLVKNLPQYAYLNDCIVFPTKGSR 106
>gi|115458854|ref|NP_001053027.1| Os04g0465700 [Oryza sativa Japonica Group]
gi|113564598|dbj|BAF14941.1| Os04g0465700, partial [Oryza sativa Japonica Group]
Length = 377
Score = 65.9 bits (159), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 654 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
V G V + KNPCLHPGD+RVL+A+ P L MVDC+VFPQ+G R
Sbjct: 12 VVGKVAITKNPCLHPGDIRVLEAIYDPDLVGMVDCLVFPQRGER 55
>gi|397614211|gb|EJK62661.1| hypothetical protein THAOC_16717 [Thalassiosira oceanica]
Length = 540
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 57/100 (57%), Gaps = 13/100 (13%)
Query: 605 NGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRF-IVQGLVVVAKN 663
N +MG +DET L Q+F+Q+S + ++ + ++ G V+VAK+
Sbjct: 8 NSEVLMGGIDETGLLEENQIFIQVSK------------HTKENNKPAYEVITGRVMVAKH 55
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
P +HPGD+R+L+AV++P L + + V+F Q G R + M+
Sbjct: 56 PVIHPGDLRMLEAVDLPELRGVKNVVLFSQHGHRPVTNMM 95
>gi|42569164|ref|NP_179581.2| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
gi|322967566|sp|O82190.2|RDR3_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 3;
Short=AtRDRP3; AltName: Full=RNA-directed RNA polymerase
3
gi|330251848|gb|AEC06942.1| RNA-dependent RNA polymerase-like protein [Arabidopsis thaliana]
Length = 992
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 112/451 (24%), Positives = 172/451 (38%), Gaps = 114/451 (25%)
Query: 327 IYTRILSTLRNGILIGDRKFEFLAF-------------------------SSSQLRESSA 361
+Y+ +NGI++G R++ F F S++ + +
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDVSTKGVKCYFIRTDSTASIDMQNP 326
Query: 362 WMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEI--EIIPDV 419
++FA G + E R + + ++ Y +R S +K TL V M I E I D+
Sbjct: 327 YIFA---GKSMHEARMHFMHVNTLSSLPNYMSRFSLILSKTK-TLEVDMTGITFEQIDDI 382
Query: 420 KIEIGKTKYVF---------SDGIGKVSAEFAR---------------KVASK------- 448
K V SDG G +S + AR + SK
Sbjct: 383 HCHDQDDKDVLDKNGKPCIHSDGTGYISEDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQ 442
Query: 449 --CGLKDNPPSAFQIR--YGGYKGVVAADPTSSKKL-----SLRDSMRK-YE-------S 491
CG PP Q R Y GY V ++KKL +R SM K YE S
Sbjct: 443 GPCG--QEPPLLIQFRIFYNGY--AVKGTFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLS 498
Query: 492 ELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
L+V+ S + L+R L++LLS G+ ++ F R + + I A +
Sbjct: 499 TFNSLEVVTTSNPPRKARLSRNLVALLSYGGVPNDFFLNILRNTLEESKTIFYSERAAFK 558
Query: 551 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
A ++ G++ ++++ G P EP+L L ++ L+ R I +M
Sbjct: 559 AA--INYGDD-QYTADMILVGI-PLDEPYLKDRLSYLLKTERNALKA-GRFPIDESYYIM 613
Query: 611 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 670
G +D T L ++ V + + G V+V +NP LH GD
Sbjct: 614 GTVDPTGELKENEICVILHSGQ---------------------ISGDVLVYRNPGLHFGD 652
Query: 671 VRVLKAVNVPALHHMVD----CVVFPQKGMR 697
+ VLKA V AL V V FPQKG R
Sbjct: 653 IHVLKATYVKALEDYVGNAKFAVFFPQKGPR 683
>gi|119183445|ref|XP_001242762.1| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
gi|392865671|gb|EAS31478.2| hypothetical protein CIMG_06658 [Coccidioides immitis RS]
Length = 1372
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/338 (23%), Positives = 128/338 (37%), Gaps = 56/338 (16%)
Query: 404 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRY 463
E + +H I+I + + + ++ SDG +S A ++ GLK+ PS FQ R
Sbjct: 677 EHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLANRIKDCLGLKEENPSCFQGRI 736
Query: 464 GGYKGVVAAD------------PTSSKKLSLR----DSMRKYESELTKLDVLAWSK-YQP 506
G KG+ D S +L + D + +V++WSK +P
Sbjct: 737 AGAKGIWMVDGRNIAFKGEECIQISGSQLKTKPHPSDCRMMLDDHQLTFEVVSWSKELRP 796
Query: 507 CFLNRQLISLLSTLGIWDEIFEKKQREAV----RQLDAILTDPLKAQEALELMS------ 556
LN QL+ +L G+ + + R + ++ I+T+ + ++ ++
Sbjct: 797 VNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQEFKGIITNEIASRAWVQKQGLYEKRK 856
Query: 557 -------PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
P EN LL G+ P +L L+TF L + +I IP
Sbjct: 857 TRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNRLKTFLDDYCARLDS-LKIRIPESTYA 915
Query: 610 MGCLDETRTLNYGQVFVQIS----GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
D L +V + S GY L G V+V +NP
Sbjct: 916 YCIADPYNVLAEDEVHLGFSRPWDSEGYTDLDGMD-----------------VLVGRNPA 958
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
P D++ +AV L H D +VFP G + +ML
Sbjct: 959 HLPSDIQKRRAVFKKELRHFKDVIVFPTAGALPLASML 996
>gi|429856861|gb|ELA31752.1| RNA-dependent RNA polymerase [Colletotrichum gloeosporioides Nara
gc5]
Length = 1365
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/315 (26%), Positives = 136/315 (43%), Gaps = 54/315 (17%)
Query: 418 DVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSS 477
D+ IGK V +DGIG++S + A+K+ + GL+D P SA Q R+G KG+ D +
Sbjct: 669 DMLSPIGK---VMNDGIGRMSPKLAQKIKNVLGLQDIP-SAIQGRFGPAKGMWLIDIQDT 724
Query: 478 KK---LSLRDSMRKY-----ESELTKLDVLAWS-KYQPCFLNRQLISLLSTLG------- 521
+ S RK+ + E L++ + + + + LN Q + +L
Sbjct: 725 GDDLWIETWPSQRKWNCDYLDPEHRTLEIKSHAAEPRSASLNIQFLPVLEDRAVDKPGMR 784
Query: 522 --IWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS------------------PGENT 561
I D + ++ RE Q +A + P++ ++ + S P N
Sbjct: 785 KAIGDSLVDELNRELEGQKNA-MKYPVQFRQWVNENSIGRKQRLIHNSVPFLAGLPDSNE 843
Query: 562 NILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNY 621
+ L+ G++P + F+ + R K L+ K I IPN +D L
Sbjct: 844 ETMNFLIDGGFEPSKQKFIQDIAWNLRRQKCENLKKKMSIKIPNSAYFYMVIDFWGVLEE 903
Query: 622 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVP 680
+V + S + ES FS S ++ G V+VA++P DV+ +KAV P
Sbjct: 904 NEVHLCFSS----KFQTES--FSDS------MLHGCDVLVARSPAHFVSDVQRVKAVFKP 951
Query: 681 ALHHMVDCVVFPQKG 695
LH + D +VF KG
Sbjct: 952 ELHALKDVIVFSAKG 966
>gi|115400193|ref|XP_001215685.1| predicted protein [Aspergillus terreus NIH2624]
gi|114191351|gb|EAU33051.1| predicted protein [Aspergillus terreus NIH2624]
Length = 1285
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 86/347 (24%), Positives = 137/347 (39%), Gaps = 59/347 (17%)
Query: 395 LGQS----FSSSKETLSVHMDEIEIIPD----VKIEIGKTKYVFSDGIGKVSAEFARKVA 446
+GQS F + LS + +++ P+ +K E G+ V +DG +S A+K+
Sbjct: 573 MGQSNCKLFQRTSLGLSKTFETVKLTPNQIIHLKDEPGRP--VMNDGCALMSRGLAKKIC 630
Query: 447 SKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK------LSLRDSMRKY----------- 489
G+ + PSAFQ R G KG+ D S L + DS K
Sbjct: 631 VILGITGSIPSAFQGRIAGAKGLWMVDKHDSDVSEEDIWLQISDSQLKIKPHPAEWKTLI 690
Query: 490 ESELTKLDVLAWSK-YQPCFLNRQLISLLSTLG----------------IWDEIFEKKQR 532
+ E +V+ WSK P LN QL+++L G IW + E +R
Sbjct: 691 DPEKLTFEVVKWSKPLHPVSLNIQLLAILERGGPVRERIAELTRAGMQSIWKDFAEVLER 750
Query: 533 EA---VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRA 589
R L P + +E + N+ + L G+KP + +L L+
Sbjct: 751 NCPILCRSLIQKTKPPGEQDRRMEDWA-ASNSECVIRLCEAGFKPRSFRYLRHRLRNCLR 809
Query: 590 SKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR 649
L + I +P D L +V S + +R G+ F +
Sbjct: 810 ELLERYENELHIEVPLSTYAFCIADPYGVLKPDEVHFGFS-SNWRDPQGQ---FEDN--- 862
Query: 650 QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
++ G+ V+VA+ P P D++ ++AV P L H D +VFP G
Sbjct: 863 ---LLDGMDVLVARVPAHFPSDIQRVRAVWKPELRHFKDVIVFPTTG 906
>gi|42569166|ref|NP_179582.2| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
gi|322967571|sp|O82189.2|RDR4_ARATH RecName: Full=Probable RNA-dependent RNA polymerase 4;
Short=AtRDRP4; AltName: Full=RNA-directed RNA polymerase
4
gi|330251849|gb|AEC06943.1| RNA-dependent RNA polymerase family protein [Arabidopsis thaliana]
Length = 927
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 121/513 (23%), Positives = 201/513 (39%), Gaps = 118/513 (23%)
Query: 254 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 313
D G + ++ V P Y R+ +F + L D+++ + L
Sbjct: 209 DSGKTHYYQCHVAPDGSY----------RLKGYFLENTGTHLHKVLGDDNVLTVRFDQL- 257
Query: 314 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF------------SSSQLR---- 357
P+ S+ D Y++ +NGI++G R+++F F S+ Q++
Sbjct: 258 PKESTYCD----NPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFI 313
Query: 358 ---ESSAWMFASRYGLTAAEIREWMGNFREIRNV---AKYAARLGQSFSSSKETLSVHMD 411
+++ + Y L+ I E +F + + A Y AR S +K+ L V M
Sbjct: 314 RTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMT 372
Query: 412 EIEIIP------------DVKIEIGKTKYVFSDGIGKVSAEFAR----KVASKCGLKDN- 454
EI ++ DV + GK + + SDG G +S + AR + ++ N
Sbjct: 373 EITVMQIDDIHCHDQSNNDVLDKNGKPR-IHSDGTGYISEDLARMCPLNIFKGKSMRSNN 431
Query: 455 --------PPSAFQIRY----GGYKGVVAADPT-SSKKLSLRDSMRK-YE-------SEL 493
PP QIR KG+ + + + +R SM K Y+ S
Sbjct: 432 IQGTCVQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTF 491
Query: 494 TKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
L+V+ S + L++ L++LLS G+ ++ F + + I A +A
Sbjct: 492 NSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAA 551
Query: 553 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT----RIFIPNGRS 608
++ N L ++++ G P EP+L L SKLL+L ++ I
Sbjct: 552 LHYGNMDDKNAL-QMIMAGI-PLDEPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYY 604
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
+MG +D T L +V SG Q V+V +NP LH
Sbjct: 605 LMGTVDPTGELKEDEV----SGLAKSQD---------------------VLVYRNPGLHF 639
Query: 669 GDVRVLKAVNVPALHHMVD----CVVFPQKGMR 697
GD+ +LKA V +L V V FPQKG R
Sbjct: 640 GDIHILKATYVKSLEQYVGNSKYGVFFPQKGPR 672
>gi|449296300|gb|EMC92320.1| hypothetical protein BAUCODRAFT_569676 [Baudoinia compniacensis
UAMH 10762]
Length = 1367
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 113/482 (23%), Positives = 200/482 (41%), Gaps = 96/482 (19%)
Query: 296 RISFID-EDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLR-NGILIGDRKFEFL---- 349
RI +D DLDK+ + +G+ I RIL L+ + +L+G + FL
Sbjct: 380 RILVVDFPDLDKLPKYIIGQKGN---------ITARILEMLKSDHMLLGQKWTAFLNKKR 430
Query: 350 -------AFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVA-KYAA----RLGQ 397
++ S+ + S + GL + + E G +RN A +YAA RL
Sbjct: 431 KVTSVDPSYDDSKSFQIS-FFAVEGAGLDSINVVEAAGWAVPLRNNAEQYAAKAYSRLDL 489
Query: 398 SFSSSKETLSVHMDEIEIIPDVK-----------------IEIGKTKYVFSDGIGKVSAE 440
S + T+ D IE I D+ + + +DG G ++
Sbjct: 490 PVSRTDATIVFAPDAIEHIADIMSDDVPDASDFNDASLPFLRSDQVPVAMTDGCGYITYA 549
Query: 441 FARKVASKCGLKDNPPSAFQIRYGGYKG--VVAADPT----SSKKLSLRDSMRKYE---S 491
AR+V S L PSAFQ+R G KG VV D T + +++ L + RK + S
Sbjct: 550 AARRVQSILNLT-WLPSAFQVRIAGAKGLLVVRQDITQGDMAQERIGLTQTQRKLQYSDS 608
Query: 492 ELTK-----LDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
+L LDV+ +SK + + + +L G+ E E V+ +
Sbjct: 609 DLDDPARRTLDVVDYSKSVRSSHIPPGFLPVLRDRGVPKEAILDVVGEQVKLETSGFLQA 668
Query: 546 LKAQEALE-------------------LMSPGENTNILKELLI---CGYKPDAEPFLSMM 583
LK++ L +++ G N ++ +L ++P P+L
Sbjct: 669 LKSRSTLHRWVLCQRNVVGFRAAAGGIVLTAGFPANTIERILFLLESWFEPAQCPYLRKQ 728
Query: 584 LQTFRASKLLELRTKT-RIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSL 642
+ F A + +++ K ++ + + S+M D T+TL G+ ++ S +
Sbjct: 729 VLDF-AGHVFDVKAKAWKLHLGSCTSVMMIPDWTQTLKPGEAYLSFS----------KPI 777
Query: 643 FSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILT 701
+ R + G+ ++VA+NPC+ D++ L+AV+ AL + D +VF +G R + +
Sbjct: 778 KDGTSGRVWSSLAGMDILVARNPCIRNSDMQKLRAVSCAALAGIFDVIVFSTQGPRSLAS 837
Query: 702 ML 703
L
Sbjct: 838 KL 839
>gi|452845289|gb|EME47222.1| hypothetical protein DOTSEDRAFT_69242 [Dothistroma septosporum
NZE10]
Length = 816
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 77/330 (23%), Positives = 136/330 (41%), Gaps = 71/330 (21%)
Query: 427 KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSS------- 477
+ V SDG ++SA ++A GL + P S Q R G KG+ V+AD ++
Sbjct: 134 RIVMSDGCSEISAWAMAQIAQMLGLPEVP-SVIQGRIFGAKGIWYVSADQDTARSTEKPP 192
Query: 478 -KKLSLRDS----------MRKYESELTKLDVL-AWSKYQPCFLNRQLISLLST-----L 520
K + + +S +R + EL ++V+ A +P L+ + LL L
Sbjct: 193 GKNIKIANSQIKVRYPLHEVRHFGKELLTMNVVKASGPCKPSILHIGFMPLLEDRKVPEL 252
Query: 521 GIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS------------------PGENTN 562
I I + Q E L ++ T P++ +E + + P
Sbjct: 253 AIRGFIGPRVQAEMNDLLTSLET-PVQLREWMAQQNEYYEICNRENGITTAGGFPWSKGE 311
Query: 563 ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 622
+ ++L G+ P + +L+ ++ + L R +I +P +++G D L G
Sbjct: 312 QIIQMLESGFFPQEDAYLAELVVEMVGNYLTLKRKNFKIHVPRSTTVIGISDPLGCLQPG 371
Query: 623 QVFVQIS--------GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
++ + S GA + LHG + V+ +NP + D++ L
Sbjct: 372 EIHIGFSTPFRDHKAGASWMHLHGMN-----------------VLSTRNPSMAGSDMQKL 414
Query: 675 KAVNVPALHHMVDCVVFPQKGMRYILTMLK 704
+AV P L H+ D VVFP +GMR + L+
Sbjct: 415 RAVYKPELAHLRDVVVFPSQGMRPLAGKLQ 444
>gi|302893516|ref|XP_003045639.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
gi|256726565|gb|EEU39926.1| hypothetical protein NECHADRAFT_39599 [Nectria haematococca mpVI
77-13-4]
Length = 1363
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 124/308 (40%), Gaps = 47/308 (15%)
Query: 430 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-----VAADPTSSKKLSLRD 484
DGIG++S ARKVA+ GL + P AFQ R G KG+ +
Sbjct: 686 MGDGIGRMSRSLARKVATHLGLLEA-PCAFQARIGSAKGMWIVDVEDDGLDDDDWIETYP 744
Query: 485 SMRKYESELTKL-----DVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKK-QREAVRQ 537
S RK+E + + +V WS+ +P LN+Q I +L + V
Sbjct: 745 SQRKWECDYLDVHHRTFEVREWSRELRPAALNQQFIPVLEAQAPRPRLMRDAIAAHLVNG 804
Query: 538 LD-------AILTDPLK----AQEALELMS----------PGENTNILKELLICGYKPDA 576
LD A + P + S P + +++ LL G++
Sbjct: 805 LDEEIGGQMAAMAHPTNLRGWTHRGFDRSSVGHVPFLGGLPERDEDVISYLLDAGFEATK 864
Query: 577 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQL 636
L ++ + + + +L+ K I IP +D T TL G+ VQ++ + Q
Sbjct: 865 CRHLRDLVWSMQKRQADQLKAKMNIKIPRSTYAYMVVDFTGTLEEGE--VQLAFSSKFQA 922
Query: 637 HGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
GES ++ G+ ++VA+ P D++ +KAV P L + D +VF KG
Sbjct: 923 DGESDT----------LLDGIDILVARAPAHFVSDIQKVKAVFRPNLKRLKDVIVFSSKG 972
Query: 696 MRYILTML 703
+ +L
Sbjct: 973 KSPLADLL 980
>gi|116208690|ref|XP_001230154.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
gi|88184235|gb|EAQ91703.1| hypothetical protein CHGG_03638 [Chaetomium globosum CBS 148.51]
Length = 1372
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 138/339 (40%), Gaps = 65/339 (19%)
Query: 402 SKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQI 461
SK +V + +I+ + + T V +DGIG++S ARKV GL D P SA Q
Sbjct: 641 SKTFPAVKFEPEQILHRPEDILSPTGKVMNDGIGRMSRGVARKVRDALGLSDIP-SAIQG 699
Query: 462 RYGGYKGVVAADPTSSKK---LSLRDSMRKYESELTK-----LDVLA-WSKYQPCFLNRQ 512
R G KG+ D +S + S RK+ + T L+V + S+ +P LN Q
Sbjct: 700 RMGSAKGMWLMDVGNSGDTDWIETYPSQRKWNCDDTDPYHRTLEVRSVASELKPAGLNLQ 759
Query: 513 LISLLSTLGIWDEIFEKKQREAVRQLDAI---LTDPLKAQ---EALELMSP-------GE 559
+ +L E + R+ R AI LT+ L+ Q + L P E
Sbjct: 760 FLPVL----------EDRARDKRRMKHAIGNRLTNNLELQFENQKTALKRPSQFRQWVNE 809
Query: 560 NTN-----------------------ILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596
N+N IL LL G+ P ++ +L + + K LR
Sbjct: 810 NSNDRGSRVKHGQVPFLGGLPESKSEILHFLLNSGFDPKSQKYLQDLAFELQKQKCDILR 869
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
TK I + + +D L +V V S + ES S + +
Sbjct: 870 TKLNIRVGRSAYIYMVIDFWGVLEENEVHVGFSS----KFRDESDDISYT-----LLADC 920
Query: 657 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
V+VA++P DV+ ++AV P LH + D +VF KG
Sbjct: 921 DVLVARSPAHFVSDVQKVRAVFKPELHALKDVIVFSAKG 959
>gi|113205255|gb|ABI34312.1| RNA-directed RNA polymerase, putative [Solanum demissum]
Length = 241
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/63 (47%), Positives = 42/63 (66%), Gaps = 1/63 (1%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
KFAVL V++ FG G++KI F LS +Y+L+L YENIW++ LH P Q ++LLI
Sbjct: 174 KFAVLGS-TEVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLI 232
Query: 63 QLL 65
Q+
Sbjct: 233 QVF 235
>gi|113205404|gb|ABI34379.1| RNA-directed RNA polymerase-like, putative [Solanum tuberosum]
Length = 274
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
KFAVL V++ FG G++KI F LS +Y+L+L YENIW++ LH P Q ++LLI
Sbjct: 194 KFAVL-GSTEVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQFLLI 252
Query: 63 QLLGAPRIFQ 72
Q+ ++FQ
Sbjct: 253 QVF---QLFQ 259
>gi|380489167|emb|CCF36884.1| RNA-directed RNA polymerase [Colletotrichum higginsianum]
Length = 1354
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 127/303 (41%), Gaps = 49/303 (16%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-KLSLRD--S 485
V +DGIG++S ARKV GL D P SA Q R+G KG+ D + KL L S
Sbjct: 654 VMNDGIGRMSRSLARKVRDVLGLSDVP-SAIQGRFGPAKGMWLTDISEEDGKLWLETWPS 712
Query: 486 MRKYESELTK------------LDVLAWS---KYQPCFLNRQLISLLSTLGIWDEIFEKK 530
RK++S+ +D + S ++ P +R + L I + ++
Sbjct: 713 QRKWDSDFKDPEHRTLEVRSHAMDTKSASLNLQFLPVMEDRAIDKDLMRETIGKNLVDEL 772
Query: 531 QREAVRQLDAILTDPLKAQEALELMS-----------------PGENTNILKELLICGYK 573
RE Q +A+ L Q + S P + + L+ G++
Sbjct: 773 NREIEEQKNAMKYSLLFRQYVNKGASTRKQRLTNGRIPFLGGLPDSSEERMNFLIDGGFE 832
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 633
P ++ +L + + R + +L K I +P + +D L G+V + S
Sbjct: 833 PQSQKYLQDLSWSLRRAHCDKLLKKMSIKVPESAYLFMVIDFWNVLEEGEVHLCFSS--- 889
Query: 634 RQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFP 692
++ FS S ++ G V+VA++P DV+ +KAV P LH + D +VF
Sbjct: 890 ---KFQTDTFSDS------MLHGCDVLVARSPAHFVSDVQRVKAVFKPELHAIKDVIVFS 940
Query: 693 QKG 695
KG
Sbjct: 941 AKG 943
>gi|378728492|gb|EHY54951.1| RNA-directed RNA polymerase [Exophiala dermatitidis NIH/UT8656]
Length = 1308
Score = 62.4 bits (150), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 73/312 (23%), Positives = 123/312 (39%), Gaps = 47/312 (15%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD--------------- 473
V +DG +S A+ + +CG + PPSA Q R G KG+ D
Sbjct: 581 VMNDGCALMSYNLAKNIWQRCGGQGPPPSAVQGRISGAKGLWLVDYHDSFADVSQRGFWI 640
Query: 474 PTSSKKLSLRDSMRKY---ESELTKLDVLAWSKYQPCFLNRQLISLLSTLGI----WDEI 526
S +L ++ R ES+ T + + + + LN QLI++L G+ ++
Sbjct: 641 QVSDSQLKIKPHPRDRSADESQRTFEVLKSAGECKEAHLNIQLITILEDRGVPRAALRKL 700
Query: 527 FEKKQREAVRQLDAILTDPLKAQEALE---LMSPGENTNIL-----------KELLICGY 572
E + L + DP + ++ L S E T L K LL G+
Sbjct: 701 LEDDTKSYFESLKEAMEDPKALRAWMQEHGLASRTEVTRFLGSFPLDRRDQMKYLLESGF 760
Query: 573 KPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAG 632
P L + F + + I +P + D L GQVF+ +
Sbjct: 761 DPTECARLKDLAAGFLQEYMTNYVERLWINVPCSTVVFCAPDPLGVLEEGQVFINFTSPV 820
Query: 633 YRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVF 691
Y + G +++GL V+VA+NP D+++ +AV LH + ++F
Sbjct: 821 YDPVKGYHDT----------VLEGLDVLVARNPAYLASDMQLCQAVYKHELHLYKNVILF 870
Query: 692 PQKGMRYILTML 703
P KG + + ++L
Sbjct: 871 PVKGKQPLASLL 882
>gi|302411624|ref|XP_003003645.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357550|gb|EEY19978.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 1283
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 99/432 (22%), Positives = 169/432 (39%), Gaps = 73/432 (16%)
Query: 327 IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFA--------------------- 365
+TR + + G+ G +E A + ++L++ FA
Sbjct: 534 FFTRDVDKVTAGLAQGLTAWEGKATTKTRLKQCRVCCFAEGGHSFSPSNRIPAKADAKNV 593
Query: 366 -SRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL-SVHMDEIEIIPDVKIEI 423
R + ++ EW R N A+ + +L + S T ++ + +II +
Sbjct: 594 NGRTKMKLTDMLEWAIAIRA--NAAQPSLKLFSRLALSNRTYPTIVFEPGQIIHHAEDIC 651
Query: 424 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSSKKLS 481
K+ V +DG+ ++S + A+ +A GL D PSA+Q R+G KGV V DP +
Sbjct: 652 SKSGKVMNDGVAEMSPKAAKVIAEYLGLADT-PSAYQGRFGSAKGVWIVGTDPDNKDDFE 710
Query: 482 LRD--SMRKYESELTKLDVLAW---SKYQP---CFLNRQLISLLSTLGIWDEIFEKKQRE 533
+ S RK+E + D + ++ +P LN Q I +L + + + R
Sbjct: 711 IETYPSQRKWECDFWDEDHRTFEVKTEARPLRAANLNMQFIPVLVNGDVKRGTDKHRMRN 770
Query: 534 AVRQ-LDAILTDPLKAQEALELMSPGENTNILKELLICGYK---------------PDAE 577
A+ L L + L Q + + P + + E GY+ PD E
Sbjct: 771 AIAGCLRTTLKEELARQRS-SMNDPVQFRQWIHENFFQGYRSDRVRDQNIRFLAGLPDNE 829
Query: 578 P-FLSMMLQT-FRASKLLELRT--------KTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 627
++M+L FR KL LR K + +GC Y ++ V
Sbjct: 830 AERVNMLLDAGFRPKKLSFLREVSYKMAFRKCELLKSKMNIKVGC------STYAKMVVD 883
Query: 628 ISGA---GYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALH 683
G G L + ++ G+ V+VA+ P P D++ ++AV P L
Sbjct: 884 FKGVLEEGEIHLGFSTKFMDPDGQFSDTLLHGMDVLVARAPAHFPSDIQRVRAVFRPELR 943
Query: 684 HMVDCVVFPQKG 695
H+ D +VF KG
Sbjct: 944 HLKDVIVFSIKG 955
>gi|122920829|pdb|2J7N|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920830|pdb|2J7N|B Chain B, Structure Of The Rnai Polymerase From Neurospora Crassa
gi|122920831|pdb|2J7O|A Chain A, Structure Of The Rnai Polymerase From Neurospora Crassa
Length = 1022
Score = 62.4 bits (150), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 122/306 (39%), Gaps = 49/306 (16%)
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKK-LSL 482
T V +DG+G++S A+++ GL D P SA Q R+G KG V+ D T + +
Sbjct: 323 TGEVMNDGVGRMSRSVAKRIRDVLGLGDVP-SAVQGRFGSAKGMWVIDVDDTGDEDWIET 381
Query: 483 RDSMRKYESELTK-----LDVLA-WSKYQPCFLNRQLISLLST---------LGIWDEIF 527
S RK+E + L+V + S+ + LN QL+ +L I D +
Sbjct: 382 YPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLI 441
Query: 528 EKKQREAVRQLDAILTDPLK-AQEALELMS-----------------PGENTNILKELLI 569
QR+ Q A L P++ Q E S P L L+
Sbjct: 442 NDLQRQFSEQKHA-LNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMN 500
Query: 570 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 629
G+ P + +L + + K L++K I + + D L +V V
Sbjct: 501 SGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHV--- 557
Query: 630 GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 689
G SS F + V+VA++P P D++ ++AV P LH + D +
Sbjct: 558 --------GFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSLKDVI 609
Query: 690 VFPQKG 695
+F KG
Sbjct: 610 IFSTKG 615
>gi|440633788|gb|ELR03707.1| hypothetical protein GMDG_06341 [Geomyces destructans 20631-21]
Length = 1330
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 125/312 (40%), Gaps = 54/312 (17%)
Query: 425 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRD 484
K+ V +DG G++S + A +A K L D PSAFQ R GG KG+ D K +
Sbjct: 659 KSGEVMNDGCGQISRKLAHHIAQKLKL-DYTPSAFQARIGGAKGMWIVD---VKDFGDKT 714
Query: 485 SMRKYESELT-------------KLDVLAWSK-YQPCFLNRQLISLLSTLG--------- 521
+++ Y S++ +V+ WS+ + LN Q + +L G
Sbjct: 715 NIKIYPSQVKWDNNSFFVDPSHRIFEVICWSRPVRSATLNLQFLPILEDRGRNNGKGMRD 774
Query: 522 IWDEIFEK-------KQREA----------VRQLDAILTDPLK-AQEALELMSPGENTNI 563
+ E +QREA VR+ +TD K Q E P
Sbjct: 775 ALSRVLENGLTYEISRQREAMDSPQAFRKWVRETAPRITDRNKLGQVGYEAGLPKSQGEK 834
Query: 564 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 623
+ LL G+ P FL + ++ L+ K I + M+ +D L +
Sbjct: 835 MNLLLDAGFNPKELCFLRDLAWKANVARGEILKKKLNISVGRSAYMLMVVDFAGILGPRE 894
Query: 624 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 683
V V S A ES+ F + + ++VA++P + D++ ++AV P L
Sbjct: 895 VHVGFSTA----FKDESTDFCDT-----ILSNMDILVARSPAHYTSDIQKVRAVFKPELS 945
Query: 684 HMVDCVVFPQKG 695
+ D +VF +G
Sbjct: 946 ALKDVIVFSTRG 957
>gi|402576169|gb|EJW70128.1| hypothetical protein WUBG_18968 [Wuchereria bancrofti]
Length = 123
Score = 62.0 bits (149), Expect = 1e-06, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK 479
+ + Y FSDG+GKVS EFA K+A GL + PS +QIR+ G KGV++ DP ++
Sbjct: 26 DTNQASYTFSDGVGKVSKEFAEKIAFDIGLGTSVPSCYQIRHRGIKGVLSVDPNLDQR 83
>gi|3687227|gb|AAC62125.1| hypothetical protein [Arabidopsis thaliana]
Length = 966
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 107/423 (25%), Positives = 166/423 (39%), Gaps = 84/423 (19%)
Query: 327 IYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIR 386
+Y+ +NGI++G R++ F F E + S G+ IR +++
Sbjct: 267 LYSTYKGIAKNGIMVGLRRYRFFVFKDGGKEEKKKDV--STKGVKCYFIRTDSTASIDMQ 324
Query: 387 NVAKYA------ARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY--VFSDGIGKVS 438
N +A AR+ ++ +L +M I D K + K + SDG G +S
Sbjct: 325 NPYIFAGKSMHEARMHFMHVNTLSSLPNYMSRYSIDQDDKDVLDKNGKPCIHSDGTGYIS 384
Query: 439 AEFAR---------------KVASK---------CGLKDNPPSAFQIR--YGGYKGVVAA 472
+ AR + SK CG PP Q R Y GY V
Sbjct: 385 EDLARMCPVNIFKGKSMRSNNIQSKNLNFEGQGPCG--QEPPLLIQFRIFYNGY--AVKG 440
Query: 473 DPTSSKKL-----SLRDSMRK-YE-------SELTKLDVLAWSKY-QPCFLNRQLISLLS 518
++KKL +R SM K YE S L+V+ S + L+R L++LLS
Sbjct: 441 TFLTNKKLPPRTVQVRPSMIKVYEDRTLSNLSTFNSLEVVTTSNPPRKARLSRNLVALLS 500
Query: 519 TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEP 578
G+ ++ F R + + I A +A ++ G++ ++++ G P EP
Sbjct: 501 YGGVPNDFFLNILRNTLEESKTIFYSERAAFKAA--INYGDD-QYTADMILVGI-PLDEP 556
Query: 579 FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHG 638
+L L ++ L+ R I +MG +D T L ++ V +
Sbjct: 557 YLKDRLSYLLKTERNALKA-GRFPIDESYYIMGTVDPTGELKENEICVILHSGQ------ 609
Query: 639 ESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQK 694
+ G V+V +NP LH GD+ VLKA V AL V V FPQK
Sbjct: 610 ---------------ISGDVLVYRNPGLHFGDIHVLKATYVKALEDYVGNAKFAVFFPQK 654
Query: 695 GMR 697
G R
Sbjct: 655 GPR 657
>gi|389740949|gb|EIM82139.1| hypothetical protein STEHIDRAFT_161484 [Stereum hirsutum FP-91666
SS1]
Length = 1302
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 81/378 (21%), Positives = 149/378 (39%), Gaps = 71/378 (18%)
Query: 386 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV-----KIEIGK---TKYVFSDGIGKV 437
+ +AK+AAR+ S+S + ++I + P++ +G ++ +DG G +
Sbjct: 454 QTIAKWAARIPLGLSNSVPGPKLECNQIRLEPEIISSSWNPSMGPKPPSEMEMTDGCGFI 513
Query: 438 SAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPT---------------SSKKLSL 482
+ +++ S D+ P A Q+R G KG++ P+ S K+
Sbjct: 514 NQTALQELHSN-KFWDSIPVAIQVRVAGNKGLLTRHPSNDANYLKYPCIWVRPSQTKIHY 572
Query: 483 RDSMRKYESELTKLDVLAWSKYQPCF-LNRQLISLLSTLGIWDEIFEKKQREAVRQL--- 538
D +E +DVL S + +++++ + G+ EI ++ RE++ +L
Sbjct: 573 SDQDLAHEPAKRTIDVLRASHMRSGIQASKEVLVNFAENGVPHEILSRRMRESLEELMEQ 632
Query: 539 -----------------DAILTDPLKAQEALELMSPG-----------ENTNILKELLIC 570
IL + + A E G E + E +C
Sbjct: 633 LLQWDDMLQLYRLVFKEGGILGARMAREAAGEARVRGYRAYDNEDDDKEEDERISEETVC 692
Query: 571 -----GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
G+ P L+ L+ + + + ++ IP S D T TL G++
Sbjct: 693 YFLDSGFTPQNNAILAEKLKEVITKAMKKRIARCKVEIPMSCSAWIIPDPTGTLKEGEIH 752
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
++ S L G+ + V G V+V+++PC P DV+ + AV L
Sbjct: 753 IRSSAPN---LKGQDGQLTEQ-------VLGPVLVSRHPCKLPTDVQKVTAVYYSQLEKY 802
Query: 686 VDCVVFPQKGMRYILTML 703
VD +VF KG R + +ML
Sbjct: 803 VDVIVFSTKGCRSLASML 820
>gi|413938755|gb|AFW73306.1| hypothetical protein ZEAMMB73_707398 [Zea mays]
Length = 208
Score = 62.0 bits (149), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 44/62 (70%), Gaps = 2/62 (3%)
Query: 5 AVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCP--RWQMTKYLLI 62
+ L+R NV+V FGF M+KI F LS+ +++LEL YE+IWE++LH P T++LLI
Sbjct: 118 SALFRASNVSVQFGFDMKKIYFYLSYNFTKFKLELSYESIWEMQLHRPPAYRSRTQFLLI 177
Query: 63 QL 64
Q+
Sbjct: 178 QV 179
>gi|83773600|dbj|BAE63727.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 1260
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 141/366 (38%), Gaps = 63/366 (17%)
Query: 387 NVAKYAARLGQ--SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 444
N+ + +L Q S SK +V + +I+P +E + V +DG +S A +
Sbjct: 543 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRGLASR 599
Query: 445 VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK-------LSLRDSMRK--------- 488
+ G+ PSAFQ R G KG+ D +S + + DS K
Sbjct: 600 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 659
Query: 489 --YESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
+ E +V+ WSK LN QL+++L G E R +R A+ D
Sbjct: 660 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIR---AVCEDF 716
Query: 546 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR------------ASKLL 593
++ ++ +L LI KP AE + ML R +L
Sbjct: 717 ATVVQS--------DSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLT 768
Query: 594 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS--------GAGYRQLHGESSLFS- 644
E R F P + + CL Q+ +++ YR L + F
Sbjct: 769 EAGFAPRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYRVLKEDEVHFGF 828
Query: 645 SSRSR------QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
SS R + ++ G+ V+VA+ P P D++ +AV P L H D +VFP G
Sbjct: 829 SSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTT 888
Query: 698 YILTML 703
+ ML
Sbjct: 889 PLAHML 894
>gi|346978355|gb|EGY21807.1| RNA-dependent RNA polymerase [Verticillium dahliae VdLs.17]
Length = 1394
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 89/384 (23%), Positives = 160/384 (41%), Gaps = 63/384 (16%)
Query: 367 RYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETL-SVHMDEIEIIPDVKIEIGK 425
R + E+ EW R N A+ + +L + S T ++ + +I + K
Sbjct: 596 RTKMKLTEMLEWAIAIRA--NAAQPSLKLFSRLALSNRTYPTIIFEPGQITHHAEDICSK 653
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSSKKLSLR 483
+ V +DG+ ++S + A+ +A GL D PSA+Q R+G KGV V DP + +
Sbjct: 654 SGKVMNDGVAEMSPKAAKAIAEYLGLTDT-PSAYQGRFGSAKGVWIVGTDPENKDDFEIE 712
Query: 484 D--SMRKYESELTKLDVLAW---SKYQP---CFLNRQLISLLSTLGIWDEIFEKKQREAV 535
S RK+E + D + ++ +P LN Q I +L + + + R A+
Sbjct: 713 TYPSQRKWECDFWDEDHRTFEVKTEARPLRAANLNMQFIPVLVNGDVKRGTDKHRMRNAI 772
Query: 536 -------------RQLDAILTDPLKAQEAL-ELMSPGENTNILKE--------------- 566
RQ + + DP++ ++ + E G + L++
Sbjct: 773 AKCLRTTLKEELARQRSS-MDDPVQFRQWIHESFFQGYRNDRLRDQNIRFLAGLPDNEAE 831
Query: 567 ----LLICGYKPDAEPFLSMM--LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLN 620
LL G++P FL M FR +LL+ + ++ M+ +D L
Sbjct: 832 RVNLLLDAGFQPKKLSFLREMSYKMAFRKCELLKSKMNIKVGCSTYAKMV--VDFKGVLE 889
Query: 621 YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNV 679
G++ + S + FS + ++ G+ V+VA+ P P D++ ++AV
Sbjct: 890 EGEIHLGFS----TKFMDPDGQFSDT------LLHGMDVLVARAPAHFPSDIQRVRAVFR 939
Query: 680 PALHHMVDCVVFPQKGMRYILTML 703
P L H+ D +VF KG + +L
Sbjct: 940 PELRHLKDVIVFSIKGDSPLADLL 963
>gi|113205315|gb|ABI34338.1| RNA-directed RNA polymerase-like, putative [Solanum demissum]
Length = 215
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
KFAVL V++ FG G++KI F LS +Y+L+L YENIW++ LH P Q + LLI
Sbjct: 135 KFAVL-GSTEVSIKFGIGLKKIYFFLSRGSADYKLQLSYENIWQVVLHRPYGQNAQSLLI 193
Query: 63 QLLGAPRIFQ 72
Q+ ++FQ
Sbjct: 194 QVF---QLFQ 200
>gi|85091735|ref|XP_959047.1| hypothetical protein NCU07534 [Neurospora crassa OR74A]
gi|4803727|emb|CAB42634.1| RNA-dependent RNA polymerase [Neurospora crassa]
gi|28920444|gb|EAA29811.1| predicted protein [Neurospora crassa OR74A]
Length = 1402
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 122/306 (39%), Gaps = 49/306 (16%)
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKK-LSL 482
T V +DG+G++S A+++ GL D P SA Q R+G KG V+ D T + +
Sbjct: 703 TGEVMNDGVGRMSRSVAKRIRDVLGLGDVP-SAVQGRFGSAKGMWVIDVDDTGDEDWIET 761
Query: 483 RDSMRKYESELTK-----LDVLA-WSKYQPCFLNRQLISLLST---------LGIWDEIF 527
S RK+E + L+V + S+ + LN QL+ +L I D +
Sbjct: 762 YPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLI 821
Query: 528 EKKQREAVRQLDAILTDPLK-AQEALELMS-----------------PGENTNILKELLI 569
QR+ Q A L P++ Q E S P L L+
Sbjct: 822 NDLQRQFSEQKHA-LNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMN 880
Query: 570 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 629
G+ P + +L + + K L++K I + + D L +V V
Sbjct: 881 SGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHV--- 937
Query: 630 GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 689
G SS F + V+VA++P P D++ ++AV P LH + D +
Sbjct: 938 --------GFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSLKDVI 989
Query: 690 VFPQKG 695
+F KG
Sbjct: 990 IFSTKG 995
>gi|113205191|gb|AAT39934.2| RNA-directed RNA polymerase-like, identical [Solanum demissum]
Length = 190
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 3 KFAVLWRGVNVTVNFGFGMRKINFLLSHLGEEYRLELDYENIWEIELHCPRWQMTKYLLI 62
KFAVL V++ FG G++K F LS +Y+L+L YENIW++ LH P Q ++LLI
Sbjct: 110 KFAVL-GSTEVSIKFGIGLKKFFFFLSSGSADYKLQLSYENIWQVVLHRPYGQNAQFLLI 168
Query: 63 QLLGAPRIFQ 72
Q+ ++FQ
Sbjct: 169 QVF---QLFQ 175
>gi|317151716|ref|XP_001824860.2| RNA-directed RNA polymerase [Aspergillus oryzae RIB40]
Length = 1291
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 90/366 (24%), Positives = 141/366 (38%), Gaps = 63/366 (17%)
Query: 387 NVAKYAARLGQ--SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 444
N+ + +L Q S SK +V + +I+P +E + V +DG +S A +
Sbjct: 574 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRGLASR 630
Query: 445 VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-------KLSLRDSMRK--------- 488
+ G+ PSAFQ R G KG+ D +S + + DS K
Sbjct: 631 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 690
Query: 489 --YESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
+ E +V+ WSK LN QL+++L G E R +R A+ D
Sbjct: 691 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIR---AVCEDF 747
Query: 546 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR------------ASKLL 593
++ ++ +L LI KP AE + ML R +L
Sbjct: 748 ATVVQS--------DSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLT 799
Query: 594 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS--------GAGYRQLHGESSLFS- 644
E R F P + + CL Q+ +++ YR L + F
Sbjct: 800 EAGFAPRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYRVLKEDEVHFGF 859
Query: 645 SSRSR------QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
SS R + ++ G+ V+VA+ P P D++ +AV P L H D +VFP G
Sbjct: 860 SSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTT 919
Query: 698 YILTML 703
+ ML
Sbjct: 920 PLAHML 925
>gi|336470141|gb|EGO58303.1| hypothetical protein NEUTE1DRAFT_82729 [Neurospora tetrasperma FGSC
2508]
gi|350290166|gb|EGZ71380.1| RNA-dependent RNA polymerase [Neurospora tetrasperma FGSC 2509]
Length = 1402
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 122/306 (39%), Gaps = 49/306 (16%)
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKK-LSL 482
T V +DG+G++S A+++ GL D P SA Q R+G KG V+ D T + +
Sbjct: 703 TGEVMNDGVGRMSRSVAKRIRDVLGLGDVP-SAVQGRFGSAKGMWVIDVDDTGDEDWIET 761
Query: 483 RDSMRKYESELTK-----LDVLA-WSKYQPCFLNRQLISLLST---------LGIWDEIF 527
S RK+E + L+V + S+ + LN QL+ +L I D +
Sbjct: 762 YPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGDRLI 821
Query: 528 EKKQREAVRQLDAILTDPLK-AQEALELMS-----------------PGENTNILKELLI 569
QR+ Q A L P++ Q E S P L L+
Sbjct: 822 NDLQRQFSEQKHA-LNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMN 880
Query: 570 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 629
G+ P + +L + + K L++K I + + D L +V V
Sbjct: 881 SGFDPKKQKYLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHV--- 937
Query: 630 GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 689
G SS F + V+VA++P P D++ ++AV P LH + D +
Sbjct: 938 --------GFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHSLKDVI 989
Query: 690 VFPQKG 695
+F KG
Sbjct: 990 IFSTKG 995
>gi|375281950|gb|AFA45121.1| RNA-directed RNA polymerase 2 [Plenodomus tracheiphilus]
Length = 1382
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 124/314 (39%), Gaps = 57/314 (18%)
Query: 429 VFSDGIGKVSAEFARKV----ASKCGLKDNPPSAFQIRYGGYKG--VVAADPTSSKK--- 479
V +DG ++S A K+ S G + PSAFQ R G KG +V+A+ + +
Sbjct: 701 VMNDGCARISVGAALKIWEAYRSATGSDEPFPSAFQGRIRGAKGMWMVSAEAHTRNEEHK 760
Query: 480 ---LSLRDSMRKYESELTKLDVLAWSKYQPCF-------------LNRQLISLLSTLGIW 523
+ + DS K+E L D ++ ++ F L+ I +L G+
Sbjct: 761 DIWIEIADSQSKFEPALEDEDDNTYNSHRLTFNYVQHSFVNGSTDLHISFIPILVDRGVE 820
Query: 524 ----DEIFEKKQREAVRQLDAILTDPLKAQE---------------ALELMSPGENTNIL 564
+ EK +QL LT+P+K A E P +
Sbjct: 821 RHNIADFMEKHLDIERKQLLETLTEPVKLHNWVTKQGSAIPANGIIAREAALPKCIPEKV 880
Query: 565 KELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 624
K LL G+ P PFL+ L + + K R + + ++G D L G+V
Sbjct: 881 KYLLRAGFTPQDSPFLARGLMQLIRQRQSVMEQKLRAPLGSATFLLGLADPENVLRPGEV 940
Query: 625 FVQISGAGYRQLHGESSLFSSSRSRQRF-IVQGL-VVVAKNPCLHPGDVRVLKAVNVPAL 682
+ SS F +RQ + + GL V++A+ P D++ ++ V P L
Sbjct: 941 HINF-----------SSPFVDEFNRQTYRHLDGLEVLIARQPACRQSDIQKVRVVAHPQL 989
Query: 683 HHMVDCVVFPQKGM 696
H+ D VVF +G
Sbjct: 990 AHLRDVVVFATRGQ 1003
>gi|238505018|ref|XP_002383738.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
gi|220689852|gb|EED46202.1| RNA-directed RNA polymerase, putative [Aspergillus flavus NRRL3357]
Length = 1131
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 143/366 (39%), Gaps = 63/366 (17%)
Query: 387 NVAKYAARLGQ--SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 444
N+ + +L Q S SK +V + +I+P +E + V +DG +S A +
Sbjct: 414 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRSLASR 470
Query: 445 VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-------KLSLRDSMRK--------- 488
+ G+ PSAFQ R G KG+ D +S + + DS K
Sbjct: 471 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 530
Query: 489 --YESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
+ E +V+ WSK LN QL+++L G E R +R A+ D
Sbjct: 531 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGHIKEYVAGLTRAGIR---AVYEDF 587
Query: 546 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR------------ASKLL 593
++ ++ +L LI KP AE + ML R +L
Sbjct: 588 ATVVQS--------DSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDVEAVVRLT 639
Query: 594 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-------------QLH-GE 639
E R F P + + CL Q+ +++ + Y ++H G
Sbjct: 640 EAGFAPRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYGVLKEDEVHFGF 699
Query: 640 SSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
SS + + + ++ G+ V+VA+ P P D++ +AV P L H D +VFP G
Sbjct: 700 SSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTT 759
Query: 698 YILTML 703
+ ML
Sbjct: 760 PLAHML 765
>gi|242051713|ref|XP_002455002.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
gi|241926977|gb|EES00122.1| hypothetical protein SORBIDRAFT_03g002800 [Sorghum bicolor]
Length = 1127
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 98/393 (24%), Positives = 157/393 (39%), Gaps = 79/393 (20%)
Query: 356 LRESSAWMFASRYGLTAAEIREWMGNFREIRN---VAKYAARLGQSFSSSKETLSVHMD- 411
+R S W Y L + + F I N VAKY +R S +T+ + +D
Sbjct: 450 VRMESGWERDYPYKLADYTVNQARRLFMHINNAPTVAKYLSRFALILS---KTIKLDVDF 506
Query: 412 ---EIEIIPD---------VKIEIGKTKYVFSDGIGKVSAEFARKVASKCG----LKDNP 455
++II D + ++ GK + +DG G +S + AR S LKD
Sbjct: 507 SKVNVKIIDDEPCREESGEIAVQDGK-DLIHTDGTGLISVDLARNCPSSIFKGNFLKDAV 565
Query: 456 PSA--------------FQIRYGGY--KGVVAADPT-SSKKLSLRDSMRKY--------E 490
S F++ + GY KG + AD + + +R SM K E
Sbjct: 566 DSKGHQHLTTKHPLLIQFRMFHNGYAVKGTLLADKRLPANTIHIRPSMIKIHGDENSFGE 625
Query: 491 SELTKLDVLAWSKYQP--CFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKA 548
L+V+ S Y+P F +R LISLL + +E F R A+ ++ P +
Sbjct: 626 KSFNSLEVITTS-YRPKRAFTSRFLISLLHYGRVREEFFLDLLRNALEDVNNARHRPRNS 684
Query: 549 QEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRS 608
E + + ++ +++ G +P+ E +L L + L+ + RI I +
Sbjct: 685 LE-VAFNHADLDDSMSARMILSGIQPEDEAYLQSQLALMAKVERKGLK-EGRIPIDDTYY 742
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
+MG D T TL QV + + QL G+ V+V K+P LH
Sbjct: 743 LMGTTDPTGTLKRDQVCIILDNG---QLSGK------------------VLVYKHPGLHF 781
Query: 669 GDVRVLKAVNVPALHHMVD----CVVFPQKGMR 697
GD+ +L A + L +V + FP G R
Sbjct: 782 GDIHILTATYIDGLEKIVGNSKYAIFFPTCGPR 814
>gi|391867215|gb|EIT76465.1| hypothetical protein Ao3042_07438 [Aspergillus oryzae 3.042]
Length = 1260
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 88/366 (24%), Positives = 143/366 (39%), Gaps = 63/366 (17%)
Query: 387 NVAKYAARLGQ--SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARK 444
N+ + +L Q S SK +V + +I+P +E + V +DG +S A +
Sbjct: 543 NIKQANCKLFQRISLGLSKTFATVALKPSQILP---LEEPEGTPVMNDGCALMSRGLASR 599
Query: 445 VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKK-------LSLRDSMRK--------- 488
+ G+ PSAFQ R G KG+ D +S + + DS K
Sbjct: 600 ICDSLGITGATPSAFQGRIAGAKGLWMVDKHNSTISTESDVWIQISDSQLKIKPHPAGWQ 659
Query: 489 --YESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP 545
+ E +V+ WSK LN QL+++L G E R +R A+ D
Sbjct: 660 EPVDEEKLTFEVVKWSKPLHTVDLNTQLLAILEHGGQIKEYVAGLTRAGIR---AVCEDF 716
Query: 546 LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR------------ASKLL 593
++ ++ +L LI KP AE + ML R +L
Sbjct: 717 ATVVQS--------DSPVLCRSLIQKMKPSAESSSAAMLHKVRRMEEWMADDAEAVVRLT 768
Query: 594 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-------------QLH-GE 639
E R F P + + CL Q+ +++ + Y ++H G
Sbjct: 769 EAGFAPRTFRPLRKRLRKCLIGLLDQYVEQLHIEVPLSTYAFCIADPYGVLKEDEVHFGF 828
Query: 640 SSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
SS + + + ++ G+ V+VA+ P P D++ +AV P L H D +VFP G
Sbjct: 829 SSNWRDPEGQFEDNLLDGMDVLVARLPAHVPSDIQRRRAVWKPELRHFKDVIVFPTVGTT 888
Query: 698 YILTML 703
+ ML
Sbjct: 889 PLAHML 894
>gi|336268466|ref|XP_003348998.1| hypothetical protein SMAC_02019 [Sordaria macrospora k-hell]
gi|380094257|emb|CCC08474.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1403
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/306 (25%), Positives = 119/306 (38%), Gaps = 49/306 (16%)
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG---VVAADPTSSKKLSL 482
T V +DG+G++S A+K+ GL D P SA Q R+G KG + D +
Sbjct: 704 TDEVMNDGVGRMSRSVAKKIRDVLGLGDVP-SAVQGRFGSAKGMWVIDVNDMGDDDWIET 762
Query: 483 RDSMRKYESELTK-----LDVLA-WSKYQPCFLNRQLISLLST---------LGIWDEIF 527
S RK+E + L+V + S+ + LN QL+ +L I D +
Sbjct: 763 YPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRAMDKVKMRQAIGDRLV 822
Query: 528 EKKQREAVRQLDAILTDPLK-AQEALELMS-----------------PGENTNILKELLI 569
QR+ Q A L P++ Q E S P L L+
Sbjct: 823 NDLQRQFSEQKHA-LNRPVEFRQWVYESYSTRATRVSHGRVPFLAGLPDSQEETLNYLMN 881
Query: 570 CGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQIS 629
G+ P + FL + + K L++K I + + D L +V V
Sbjct: 882 SGFDPKKQKFLQDIAWDLQKRKCDTLKSKLNIRVGRSAYIYMIADFWDVLEENEVHV--- 938
Query: 630 GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCV 689
G SS F + V+VA++P P D++ ++AV P LH + D +
Sbjct: 939 --------GFSSKFRDEEESFTLLSDCDVLVARSPAHFPSDIQRVRAVFKPELHMLKDVI 990
Query: 690 VFPQKG 695
+F KG
Sbjct: 991 IFSTKG 996
>gi|119479435|ref|XP_001259746.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL
181]
gi|119407900|gb|EAW17849.1| RNA-directed RNA polymerase, putative [Neosartorya fischeri NRRL
181]
Length = 1338
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 127/323 (39%), Gaps = 59/323 (18%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--------KL 480
V +DG +S A + + G+ N PSAFQ R G KG+ D +S +
Sbjct: 656 VMNDGCALMSRRLANAICDQLGITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDDFWI 715
Query: 481 SLRDSMRKYE-----------SELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFE 528
+ DS K + E +V+ WSK P LN QL+++L G E
Sbjct: 716 QISDSQLKIQPHPQAWREPIDDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREYIA 775
Query: 529 KKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFR 588
+ R +R + L++ N+ L LI KP A+ S M Q +
Sbjct: 776 ELTRAGIRAISQDFASVLES-----------NSAALCRSLIQKIKPMADDGSSGMSQRMK 824
Query: 589 ------------ASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-- 634
+L E R F P + + CL + ++ +++ + Y
Sbjct: 825 RLEQWTANDAEAIIRLTEAGFALRSFYPLRKRLGRCLRDLLDRYADELHIEVPLSTYAFC 884
Query: 635 -----------QLH-GESSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVP 680
++H G S+ + +R + + ++ G+ V+V + P P D++ +AV P
Sbjct: 885 IADPYGVLKEDEVHFGFSNNWRDARGQFEDNLLDGVDVLVGRLPAHVPSDIQRRRAVWKP 944
Query: 681 ALHHMVDCVVFPQKGMRYILTML 703
L H D +VFP G + ML
Sbjct: 945 ELRHFKDVIVFPTTGDIPLAHML 967
>gi|388853529|emb|CCF52928.1| uncharacterized protein [Ustilago hordei]
Length = 1363
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 8/138 (5%)
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
E+L+ G+ P + P+L+ +L + + + + I +P M D T TL G++
Sbjct: 778 EMLLVGFHPKSCPYLAELLVEIADNAMKRIIKRFTIPVPRSAEAMVMPDPTGTLEEGEIQ 837
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
+ SG + L +R + + +G V+V ++PCL P D+R ++AV P L
Sbjct: 838 FRFSG--------DRLLDPETRLKLNHVPEGDVLVTRHPCLLPTDIRKVRAVVRPELSTY 889
Query: 686 VDCVVFPQKGMRYILTML 703
D VVF KG + ++L
Sbjct: 890 EDVVVFSIKGQGPLASLL 907
Score = 45.1 bits (105), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 75/172 (43%), Gaps = 24/172 (13%)
Query: 388 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDV---KIEIGKTKYVFSDGIGKVSAEFARK 444
+ KY R+ S+S + +D+I PDV + + +DG G VS A+
Sbjct: 519 LGKYIQRVQLGLSTS--VPASVIDKITYEPDVFGDPDPVTGKRVEMTDGAGVVSLAVAKD 576
Query: 445 VASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLS---------LRDSMRKYESELTK 495
+A G ++ P AFQ R G KGV +P + L +RDS +K K
Sbjct: 577 IAEHLGY-ESVPCAFQGRVAGSKGVWYIEPRPERSLPGEKPTRWIRVRDSQKKINYADDK 635
Query: 496 --------LDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 538
+D+L S+ + P L++Q+I ++ G+ FE Q +R +
Sbjct: 636 PLDPSQLVIDLLGPSRTFAPSTLSKQIIMVIQANGVPTSTFEGMQEAELRAI 687
>gi|171685170|ref|XP_001907526.1| hypothetical protein [Podospora anserina S mat+]
gi|170942546|emb|CAP68197.1| unnamed protein product [Podospora anserina S mat+]
Length = 1478
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 86/373 (23%), Positives = 149/373 (39%), Gaps = 68/373 (18%)
Query: 371 TAAEIREWMGNFREIRNVA----KYAARLGQSFSSSKETLSVHMDEIEIIP-DVKIEIGK 425
T +++ W+ N E +N + K +R+ S + T+ +I + P D+ IGK
Sbjct: 733 TVSQMLNWLLNLDEPKNQSQPHLKLFSRIQLGLSKTFPTVIFSASQIFVQPQDMLSPIGK 792
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRD- 484
V +DG+G++S ARK+ GL + PSA Q R G KG+ D + +
Sbjct: 793 ---VMNDGVGRMSRTVARKIRDIMGLTEI-PSAVQGRIGSAKGMWIMDVLDTGDEEWIET 848
Query: 485 --SMRKYESELTKLDVLA--------WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREA 534
S RK+E + +D+ ++ + LN Q + +L E K + +
Sbjct: 849 WLSQRKWECDPQTVDIHQRTLEIRAYATELKSAGLNLQFLPVL-------EDRAKDKAQM 901
Query: 535 VRQLDAILTDPLKAQEALELMS--------------------------------PGENTN 562
R + A LT+ LK + + + P +
Sbjct: 902 KRAIGARLTNDLKKEFDDQKAAFKHPLLLRQWLHENWSGRADRVKNEVAFLGGLPEKKEE 961
Query: 563 ILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYG 622
+L LL G+ P + ++ + + K L TK I + + +D L G
Sbjct: 962 VLNLLLHSGFDPKHQKYIQDIAWELQKQKCDILSTKLNIKVGRSAYIYMVVDFWEVLEEG 1021
Query: 623 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
+V V S + G++ S + + V+VA++P DV+ ++AV P L
Sbjct: 1022 EVHVGFSS----KFRGDADDTSYT-----LLSDCDVLVARSPAHFASDVQRVRAVFKPQL 1072
Query: 683 HHMVDCVVFPQKG 695
H + D +VF KG
Sbjct: 1073 HALKDVIVFSSKG 1085
>gi|440493517|gb|ELQ75977.1| RNA-directed RNA polymerase QDE-1 [Trachipleistophora hominis]
Length = 1082
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 76/163 (46%), Gaps = 32/163 (19%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
+ V V P + P+ N+SNR+LR+F N +RI+F
Sbjct: 831 IRTVHVYPLSIACMYPKNNLSNRILRNF----SNMIRITF-------------------- 866
Query: 320 TDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFAS-RYG---LTAAEI 375
+ + I + NGI I DR + F+A SSSQLR +SAW + R G + + +
Sbjct: 867 KNTCDENVMEYIREIMSNGITI-DRPYYFVATSSSQLRSNSAWFISPYRKGNVLVGSDYV 925
Query: 376 REWMGNFREIRNVAKYAARLGQSFSSSKETLSV--HMDEIEII 416
R WMG E N+ KY R+G SS+ V +++E +I+
Sbjct: 926 RNWMGVI-ECDNIGKYMIRVGLGLSSTFSMFEVDDYVEEDDIV 967
>gi|320034225|gb|EFW16170.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 1289
Score = 60.1 bits (144), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 128/338 (37%), Gaps = 56/338 (16%)
Query: 404 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRY 463
E + +H I+I + + + ++ SDG +S A ++ GLK+ PS FQ R
Sbjct: 594 EHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLANRIKDCLGLKEENPSCFQGRI 653
Query: 464 GGYKGVVAAD------------PTSSKKLSLR----DSMRKYESELTKLDVLAWSK-YQP 506
G KG+ D S +L + D + +V++WS+ +P
Sbjct: 654 AGAKGIWMVDGRNIAFKGEECIQISGSQLKTKPHPSDCRMMLDDHQLTFEVVSWSRELRP 713
Query: 507 CFLNRQLISLLSTLGIWDEIFEKKQREAV----RQLDAILTDPLKAQEALELMS------ 556
LN QL+ +L G+ + + R + ++ I+T+ + ++ ++
Sbjct: 714 VNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQEFKDIITNEIASRAWVQKQGLYEKRK 773
Query: 557 -------PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
P EN LL G+ P +L L+TF L + +I IP
Sbjct: 774 TRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNRLKTFLDDYCARLDS-LKIRIPESTYA 832
Query: 610 MGCLDETRTLNYGQVFVQIS----GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
D L +V + S GY L G V+V +NP
Sbjct: 833 YCIADPYNVLAEDEVHLGFSKPWDSEGYTDLDGMD-----------------VLVGRNPA 875
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
P D++ +AV L + D +VFP G + +ML
Sbjct: 876 HLPSDIQKRRAVFKKELRYFKDVIVFPTAGALPLASML 913
>gi|402468934|gb|EJW04010.1| hypothetical protein EDEG_01704 [Edhazardia aedis USNM 41457]
Length = 2457
Score = 60.1 bits (144), Expect = 4e-06, Method: Composition-based stats.
Identities = 28/54 (51%), Positives = 35/54 (64%)
Query: 649 RQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
R I+ G +VVAKNPCLHPGDVR+ +AV L H+ D +VF KG R + M
Sbjct: 32 RDTNILFGSIVVAKNPCLHPGDVRIAEAVYKKELEHLQDVIVFSGKGSRPLFNM 85
>gi|156058730|ref|XP_001595288.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980]
gi|154701164|gb|EDO00903.1| hypothetical protein SS1G_03377 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1390
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 82/350 (23%), Positives = 142/350 (40%), Gaps = 55/350 (15%)
Query: 390 KYAARLGQSFSSSKETLSV---HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 446
K AR S ++ T++V H+ E I + + K YV +DG G++S ARK+
Sbjct: 622 KLFARTALVVSRNRATVTVDQAHIRRREDIRNPDVNNPKKTYVMTDGAGRLSLALARKIV 681
Query: 447 SKCGLKDNPPSAFQIRYGGYKGVVAADPTS---SKKLSLRDSMRKYE-SELTKLDVLAWS 502
+ L P+AFQ R+G KG+ D + S + L D K+E E + WS
Sbjct: 682 FELELS-YIPAAFQGRFGEAKGLWIVDRSEDIESDWIELYDEQCKWERGEEGSPEFDHWS 740
Query: 503 K-----------YQPCFLNRQLISLL-----STLGIWDEIF---EKKQREAVRQLDAILT 543
+ LN QL+ LL + + I ++ ++++ +L LT
Sbjct: 741 HRTFEVVGHSAPLKTADLNTQLLPLLVHQATDPRAMRNAILNALKEGLKQSLEELKTALT 800
Query: 544 DPLKAQEALELMS------------------PGENTNILKELLICGYKPDAEPFLSMMLQ 585
P + + + L + P ++ + L LL G+ P ++ + +
Sbjct: 801 SPQELRSWIRLTNSSVQDRVKNGAIQWRGGLPAKHEDRLSTLLDAGFDPRKLHYIMELAK 860
Query: 586 TFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSS 645
K EL+ + I + + D L +V + S + ES L +
Sbjct: 861 KAFDMKCEELKERLNITVAKSTKVYMVPDFWGVLEPNEVHLNFSSF----VDNESGLSDT 916
Query: 646 SRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
+ V+VA+NP +P D++ + AV+ L H+ D +VF KG
Sbjct: 917 Q------LENVDVLVARNPAHYPSDIQRVTAVSKHELRHLKDVIVFSTKG 960
>gi|408399167|gb|EKJ78292.1| hypothetical protein FPSE_01753 [Fusarium pseudograminearum CS3096]
Length = 1388
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 121/306 (39%), Gaps = 47/306 (15%)
Query: 432 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-----VAADPTSSKKLSLRDSM 486
DGI ++S AR+V++ GL + P AFQ R G KG+ + S
Sbjct: 710 DGIARMSRGLARRVSTHLGLLET-PCAFQARIGSAKGMWIVDVEDDGLDDDVWIETYPSQ 768
Query: 487 RKYESELTKL-----DVLAWSK-YQPCFLNRQLISLLSTLG---------IWDEIFEKKQ 531
RK+E + + +V WS+ + LN Q I +L I + + Q
Sbjct: 769 RKWECKFEDVHHRTFEVREWSRELKSASLNSQFIPVLEAQAPNPNSMRNVIANHLANGLQ 828
Query: 532 REAVRQLDAILTDPLK----AQEALELMS----------PGENTNILKELLICGYKPDAE 577
E QL A +T P + S P + +I+ +L G+
Sbjct: 829 DEIGGQL-AAMTHPTSLRGWTHRGFDRSSLGRVPFVGGLPDHDDDIVSFMLDAGFDATKC 887
Query: 578 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 637
FL ++ + + +L+ K I IP +D T TL G+ VQ++ + Q
Sbjct: 888 RFLRDLVWNNQKRQAEQLKAKMNIKIPRSAYAFMVVDFTGTLEEGE--VQLAFSSKFQAD 945
Query: 638 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GES + ++VA+ P DV+ ++AV P L + D +VF KG
Sbjct: 946 GESDT---------LLDDIDILVARAPAHFVSDVQKVRAVFRPNLKRLKDVIVFSSKGKS 996
Query: 698 YILTML 703
+ ML
Sbjct: 997 PLADML 1002
>gi|303319845|ref|XP_003069922.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240109608|gb|EER27777.1| RNA dependent RNA polymerase family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 1372
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 76/338 (22%), Positives = 128/338 (37%), Gaps = 56/338 (16%)
Query: 404 ETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRY 463
E + +H I+I + + + ++ SDG +S A ++ GLK+ PS FQ R
Sbjct: 677 EHIIIHPRHIDIPLEDRGNMKSSQPDMSDGCALMSVSLANRIKDCLGLKEENPSCFQGRI 736
Query: 464 GGYKGVVAAD------------PTSSKKLSLR----DSMRKYESELTKLDVLAWSK-YQP 506
G KG+ D S +L + D + +V++WS+ +P
Sbjct: 737 AGAKGIWMVDGRNIAFKGEECIQISGSQLKTKPHPSDCRMMLDDHQLTFEVVSWSRELRP 796
Query: 507 CFLNRQLISLLSTLGIWDEIFEKKQREAV----RQLDAILTDPLKAQEALELMS------ 556
LN QL+ +L G+ + + R + ++ I+T+ + ++ ++
Sbjct: 797 VNLNVQLLMVLQHGGVQTDRLKNLVRCEMNTWYQEFKDIITNEIASRAWVQKQGLYEKRK 856
Query: 557 -------PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
P EN LL G+ P +L L+TF L + +I IP
Sbjct: 857 TRRIDDFPTENVEQAILLLDSGFHPLKSVYLMNRLKTFLDDYCARLDS-LKIRIPESTYA 915
Query: 610 MGCLDETRTLNYGQVFVQIS----GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPC 665
D L +V + S GY L G V+V +NP
Sbjct: 916 YCIADPYNVLAEDEVHLGFSKPWDSEGYTDLDGMD-----------------VLVGRNPA 958
Query: 666 LHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
P D++ +AV L + D +VFP G + +ML
Sbjct: 959 HLPSDIQKRRAVFKKELRYFKDVIVFPTAGALPLASML 996
>gi|449436040|ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis
sativus]
Length = 1056
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 130/563 (23%), Positives = 218/563 (38%), Gaps = 136/563 (24%)
Query: 230 RWLTDQYRKYMTSRSKPS--SPAISLDDGLVYVHRVQVT-PSRVYFCGPEINVSNRVLRH 286
RWL + S S PS + D +++ V F GP +N + L+
Sbjct: 234 RWLGWELVSVTHSESLPSYLVQYVDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQR 293
Query: 287 FRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKF 346
D DN L + F ++ D T LS + Y++I R+GIL+G R++
Sbjct: 294 VLGD-DNVLMVKFAEDKSD----TPLSNHSGGSF-----YAYSKIA---RDGILLGLRRY 340
Query: 347 EFLAF------------SSSQLR------ESSAWMFASR-YGL---TAAEIREWMGNFRE 384
F F ++S ++ ES A++ Y L T E R +
Sbjct: 341 HFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYIDKIEPYKLSNRTVFEARSLFMHAHM 400
Query: 385 IRNVAKYAAR----LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY------VFSDGI 434
+ ++A Y AR L ++ + + +V++ I IP I G Y + +DG
Sbjct: 401 VSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDIPCKDI-YGNVIYRDGKPLIHTDGT 459
Query: 435 GKVSAEFA----------------------RKVASKCGLKDN-------------PPSAF 459
G +S + A +++ + G ++ PP
Sbjct: 460 GFISEDLALECPMNVFKGQAKHDADLKAIWQRIPAFEGFQNKTLQLTLPGLELREPPLLI 519
Query: 460 QIR--YGG--YKGVVAADPT-SSKKLSLRDSMRK---------YESELTKLDVLAWSKYQ 505
Q R Y G KG + + + +RDSM K +E+E + V + +
Sbjct: 520 QFRLFYNGLAVKGTFLLNKQLPPRTIQIRDSMIKVEIDPDLENFETENSLELVGTSNPPK 579
Query: 506 PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALEL-MSPGENTNIL 564
FL+R LI+LL+ G+ E F +A++ + + + + AL + ++ GE + L
Sbjct: 580 RTFLSRNLIALLNYGGVPREYFMNILVDALKDVQGVFSS---KRAALRVSINNGEMDDFL 636
Query: 565 KELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT----RIFIPNGRSMMGCLDETRTLN 620
+I P E +L +R S LL+ K+ R+ +P +MG +D T TL
Sbjct: 637 VARMILAGIPLDESYLQ-----YRLSVLLKEEKKSLKSGRLHVPECYYLMGTVDPTFTLE 691
Query: 621 YGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN-- 678
G+V V + + G V+V +NP LH GD+ VL A
Sbjct: 692 SGEVCVILYNGQ---------------------INGKVLVYRNPGLHFGDIHVLTAKYVE 730
Query: 679 --VPALHHMVDCVVFPQKGMRYI 699
VP + + + F KG R +
Sbjct: 731 KLVPVVGNAKYAIFFSSKGPRSV 753
>gi|290994090|ref|XP_002679665.1| predicted protein [Naegleria gruberi]
gi|284093283|gb|EFC46921.1| predicted protein [Naegleria gruberi]
Length = 1014
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 93/394 (23%), Positives = 164/394 (41%), Gaps = 70/394 (17%)
Query: 336 RNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGN----FREIRNVAKY 391
NGI ++F + S+S ++ SSA +F + L ++ +G+ + V K
Sbjct: 262 ENGISYEGHCYKFFSTSNSGMKGSSA-VFINSTLLNLETVKLLVGSSFDKALQTGGVRKV 320
Query: 392 AARLGQSFSSSKETLSV-HMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC- 449
A+R+G S +S ++L+ D+I +P IE ++ +DG G ++F ++ K
Sbjct: 321 ASRIGLSIGTSIQSLATFEFDQIFCLPQ-NIE---DEFPITDGSGLARSDFFEEILEKTY 376
Query: 450 --------GLKDNPP--------------SAFQIRYGGYKGVVAADPTS----------- 476
L +P SA Q+R G KGV+ P S
Sbjct: 377 AIPYFEMEKLAKHPEMKLSRRLETDYKNVSAIQVRMLGAKGVLQKIPDSLWKVLQVKWKF 436
Query: 477 --SKKLSLRDSMRKYESE-LTKLDVLAWSKYQPCFLNRQLISLL----STLGIWDEIFEK 529
S K+ LR+SM K+E+ K+DVL++S ++R ++S L +EIF
Sbjct: 437 PDSTKVILRNSMIKFETAYYKKIDVLSYSSATGGSISRGVMSCLLERTDHREEMEEIFMN 496
Query: 530 KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRA 589
+ +++++ DP+ L L G L + LI P F+ +++
Sbjct: 497 DLDDYLKEMEDNRNDPIYVCNYL-LTGTGNTKEGLAKQLIMADHPLNNYFIDSVIRENIK 555
Query: 590 SKLLELRTKTRIFIPNGR---SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSS 646
++ L L F N S +G +DE+ L G++ H F++S
Sbjct: 556 TRHLGLVNDNLSFKINSHYCVSALGGVDESGELKEGEI------------HINCDAFTNS 603
Query: 647 RSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVP 680
++ V+V +NP + GD++ LK P
Sbjct: 604 ---PYYLELDYVLVYRNPLGYEGDIQKLKIKKNP 634
>gi|313243221|emb|CBY39877.1| unnamed protein product [Oikopleura dioica]
Length = 265
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/190 (26%), Positives = 89/190 (46%), Gaps = 35/190 (18%)
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGI 434
I ++ G+F +I+ V KYAARLG S+++ + + ++ D+ + G F+DG
Sbjct: 26 IWKYFGDFEKIKTVPKYAARLGLLISATRHAEFIEDGKWQLEKDI-VHHGCN---FTDGC 81
Query: 435 GKVSAEFARK--VASKCGLKDNP-----PSAFQIRYGGYKGVVAADPT---SSKKLSLRD 484
G++S + A++ + C + PS QIR+ G KG++ DP+ S K + LR+
Sbjct: 82 GRMSTQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDVILRE 141
Query: 485 SMRKYESELTK------------------LDVLAWSKYQPCF---LNRQLISLLSTLGIW 523
S +K+E L + + +P LN+Q + +LS LGI
Sbjct: 142 SQKKFEWNFNTIKGRLKYTEKKQGRTGRLLGICRGGESKPFVFGRLNKQFVLVLSALGIP 201
Query: 524 DEIFEKKQRE 533
+ + Q E
Sbjct: 202 NTTLLEIQNE 211
>gi|46124253|ref|XP_386680.1| hypothetical protein FG06504.1 [Gibberella zeae PH-1]
Length = 1372
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 120/306 (39%), Gaps = 47/306 (15%)
Query: 432 DGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-----VAADPTSSKKLSLRDSM 486
DGI ++S AR+V+ GL + P AFQ R G KG+ + S
Sbjct: 694 DGIARMSRGLARRVSIHLGLLETP-CAFQARIGSAKGMWIVDVEDDGLDDDVWIETYPSQ 752
Query: 487 RKYESELTKL-----DVLAWSK-YQPCFLNRQLISLLSTLG---------IWDEIFEKKQ 531
RK+E E + +V WS+ + LN Q I +L I + + Q
Sbjct: 753 RKWECEFEDVHHRTFEVREWSRELKSASLNTQFIPVLEAQAPNPNSMRNVIANHLANGLQ 812
Query: 532 REAVRQLDAILTDPLK----AQEALELMS----------PGENTNILKELLICGYKPDAE 577
+ QL A +T P + S P + +I+ +L G+
Sbjct: 813 DDIGGQL-AAMTHPTSLRGWTHRGFDRSSLGRVPFVGGLPDHDDDIVSFMLDAGFDATKC 871
Query: 578 PFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLH 637
FL ++ + + +L+ K I IP +D T TL G+V Q++ + Q
Sbjct: 872 RFLRDLVWNNQKRQAEQLKAKMNIKIPRSAYAFMVVDFTGTLEEGEV--QLAFSSKFQAD 929
Query: 638 GESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
GES + ++VA+ P DV+ ++AV P L + D +VF KG
Sbjct: 930 GESDTL---------LDDIDILVARAPAHFVSDVQKVRAVFRPNLKRLKDVIVFSSKGKS 980
Query: 698 YILTML 703
+ ML
Sbjct: 981 PLADML 986
>gi|224093866|ref|XP_002310026.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
gi|222852929|gb|EEE90476.1| hypothetical protein POPTRDRAFT_562705 [Populus trichocarpa]
Length = 406
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 112/267 (41%), Gaps = 42/267 (15%)
Query: 451 LKDNPPSAFQIRYGGYKGVVAADPTSSKKLS-----LRDSMRKYESE--------LTKLD 497
L +PP Q R V +KKL+ +R SM K E++ L+
Sbjct: 134 LHGDPPLLIQFRLFNNGRAVKGTFLVNKKLNHRTLHVRPSMIKVETDPKLSNTFSKNSLE 193
Query: 498 VLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS 556
++ S + + FL++ LI+LLS G+ +E F A+ IL++ KA + L
Sbjct: 194 IVGTSCRPKKTFLSKNLIALLSYGGVPEEFFMGILNNALEDAHGILSNK-KAALRVALNY 252
Query: 557 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 616
+ NI+ ++ CG P EP+L L + + + +I +P +MG D T
Sbjct: 253 GDMDDNIVATMIGCGI-PLEEPYLQHHL-SILKKEEKKSLKGGKIPVPESYYLMGTADPT 310
Query: 617 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 676
L +V + + Q+ GE V+V +NP LH GD+ +LKA
Sbjct: 311 GLLESDEVCIILDCG---QVSGE------------------VLVYRNPGLHFGDIHILKA 349
Query: 677 VNVPALHHMVD----CVVFPQKGMRYI 699
V L V + FP KG R +
Sbjct: 350 TYVRELEDFVGNAKYAIFFPCKGPRSL 376
>gi|313237377|emb|CBY12568.1| unnamed protein product [Oikopleura dioica]
Length = 316
Score = 58.9 bits (141), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 68/130 (52%), Gaps = 22/130 (16%)
Query: 375 IREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKT----KYVF 430
I ++ G+F +I+ V KYAARLG S+++ E I D K ++ K F
Sbjct: 26 IWKYFGDFEKIKTVPKYAARLGLLISATRHA--------EFIEDGKWQLEKDIVHHGCNF 77
Query: 431 SDGIGKVSAEFARK--VASKCGLKDNP-----PSAFQIRYGGYKGVVAADPT---SSKKL 480
+DG G++S + A++ + C + PS QIR+ G KG++ DP+ S K +
Sbjct: 78 TDGCGRMSTQLAQRFTLNKHCANRYKHQSFEVPSIVQIRFMGCKGILVHDPSLDFSGKDV 137
Query: 481 SLRDSMRKYE 490
LR+S +K+E
Sbjct: 138 ILRESQKKFE 147
>gi|425774605|gb|EKV12907.1| RNA-directed RNA polymerase, putative [Penicillium digitatum Pd1]
gi|425776464|gb|EKV14681.1| RNA-directed RNA polymerase, putative [Penicillium digitatum PHI26]
Length = 1445
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/340 (24%), Positives = 132/340 (38%), Gaps = 37/340 (10%)
Query: 398 SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPS 457
S SK +V + +++ ++ T+ V +DG +S A ++ + G+ PS
Sbjct: 757 SLGLSKTFATVKLKPTQVL---RLRDDPTRTVMNDGCALISRPLANQICDQLGITAATPS 813
Query: 458 AFQIRYGGYKGVVAADPTSSKKLSLRDS--------------------MRKYESELTKLD 497
FQ R G KG+ D S +L D + + E +
Sbjct: 814 CFQGRIAGAKGLWMVDCHQSSITTLNDDNIWVQISDSQLKIHPHPQEWVDPVDDEKLTFE 873
Query: 498 VLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL-DAIL-----TDPLKAQE 550
V+ W+K P LN QL+++L G E K R+ V+ L D L P+ +
Sbjct: 874 VVNWAKPLHPVDLNIQLLAILEYGGNVKEYIAKLTRDGVQSLYDDFLEVLRSNSPVGCRA 933
Query: 551 ALELMSP-GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPN--GR 607
L+ + P GE+ L DAE + F LR K R FI R
Sbjct: 934 LLQKLRPSGEDGTGKARRLEQWVTSDAESIIRFSEAGFAPRDFFPLRMKLRKFITWLLER 993
Query: 608 SMMGCLDETRTLNYGQVFVQISGA-GYRQLH-GESSLFSSSRSR-QRFIVQGL-VVVAKN 663
+ + Y G G ++H G S+ + + + + ++ G+ V+V +
Sbjct: 994 HVEELKIQVPLSTYAYCIADPYGVLGPDEVHFGFSNNWRDPQGQFEDNLLDGVDVLVGRL 1053
Query: 664 PCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
P P D++ KAV L H D +VFP G + ML
Sbjct: 1054 PAHLPSDIQRRKAVWKTELRHFKDVIVFPTTGNFPLAGML 1093
>gi|384496670|gb|EIE87161.1| hypothetical protein RO3G_11872 [Rhizopus delemar RA 99-880]
Length = 1225
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 124/301 (41%), Gaps = 55/301 (18%)
Query: 269 RVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIY 328
++ P+++ SNR R F +D FL + + S SP +
Sbjct: 330 KITLRSPKVSASNRFFRKFGQD--RFLEV---------VLSATSSPS-----------MV 367
Query: 329 TRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYG-----LTAAEIREWMGNFR 383
++ + L+ R F FL + +A +F + G ++ ++ +W
Sbjct: 368 IKLKDYILKPFLLMQRVFRFLFI------KDNALIFFATEGTDLEPISIQQVIDWHMPII 421
Query: 384 EI--RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK---YVFSDGIGKVS 438
E +++KYA+R+ +SSS T+ EIE I D+ I TK +DG G +S
Sbjct: 422 ENWGMSMSKYASRMSLGYSSSIPTIQFEPSEIEYIDDIYSTISTTKDASACMTDGCGIIS 481
Query: 439 AEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP----TSSKKLSLRDSMRKYESELT 494
R++ C D P A Q R G KGV P S K + +R S K+++ L
Sbjct: 482 CAAMREIMG-CQATDRLPCAIQGRIAGAKGVWIIAPDLDFNSGKYIKIRKSQDKFKTGLP 540
Query: 495 KLDV-LAWSKYQ-----------PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAIL 542
+ D L Y P LN Q I +L+ G+ ++F + E + +L ++
Sbjct: 541 QADSHLDPHHYTFDLVKNSICIYPSNLNIQFIQVLAAGGVPTKVFVEILGEYLHRLATVV 600
Query: 543 T 543
T
Sbjct: 601 T 601
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 557 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 616
P ++ LL G+ + F++ + + L++K +I I ++ D
Sbjct: 692 PSNGHEVVVRLLDSGFDL-SNVFVATRISNIFKQLMAPLKSKYKIEIEQSCTVTCIPDPI 750
Query: 617 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKA 676
L +V++Q+S R++ ++ + + ++ G VVVA+NPC DV+ +KA
Sbjct: 751 GILEPDEVYLQLST---RKVDEKTGIRAG-------LILGDVVVARNPCGLKSDVQKVKA 800
Query: 677 VNVPALHHMVDCVVFPQKGMRYILTML 703
++ PAL D ++F KG + + L
Sbjct: 801 IDCPALRMYTDLIIFSTKGESSLASKL 827
>gi|302782930|ref|XP_002973238.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
gi|300158991|gb|EFJ25612.1| hypothetical protein SELMODRAFT_413790 [Selaginella moellendorffii]
Length = 878
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 81/333 (24%), Positives = 134/333 (40%), Gaps = 69/333 (20%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR--YGG--YKGVVAADPT-SSKKLSLR 483
+ +DG G +S + A++VA + P+ Q+R Y G KG + T K + R
Sbjct: 274 IHTDGTGFISEDLAKQVA--VNTSEEYPALLQVRLFYHGIAVKGTLLTLKTLQHKTIVYR 331
Query: 484 DSMRKYESE--------LTKLDVLAWSKYQP-CFLNRQLISLLSTLGIWDEIFEKKQREA 534
DSM K +++ L++ S P L+R +I+LL G+ + F + +EA
Sbjct: 332 DSMLKVKADPKLANCPSFNSLEICTTSHKPPVASLSRYVIALLLEGGVPESFFIQVVQEA 391
Query: 535 VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 594
+ + L D A S G+ + + +++ G P + FL L T ++L +
Sbjct: 392 IAKAMTPLQDIAAAHRLCSRFSFGD---MPRRMILAGI-PLTDHFLRNSLMTMIRTQL-K 446
Query: 595 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 654
K + + +MG D T TL QV + + LH
Sbjct: 447 RYAKANVPLEGSYYLMGSADPTNTLARNQVAILLENG---PLHRHK-------------- 489
Query: 655 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRYIL---------- 700
V+V K+P +HPGDV V +A L + ++FP KG R ++
Sbjct: 490 ---VLVYKHPGMHPGDVHVFEATWNQELESCLGNSKYVIIFPTKGPRSVVHEIANSDLDG 546
Query: 701 ------------TMLKPRLLWYE--LNSSHALP 719
+ KP+L W E N + A+P
Sbjct: 547 DLYWICTNEQVSNLYKPQLPWQEKRTNGTTAVP 579
>gi|3687226|gb|AAC62124.1| hypothetical protein [Arabidopsis thaliana]
Length = 905
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 117/513 (22%), Positives = 196/513 (38%), Gaps = 127/513 (24%)
Query: 254 DDGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLS 313
D G + ++ V P Y R+ +F + L D+++ + L
Sbjct: 214 DSGKTHYYQCHVAPDGSY----------RLKGYFLENTGTHLHKVLGDDNVLTVRFDQL- 262
Query: 314 PRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF------------SSSQLR---- 357
P+ S+ D Y++ +NGI++G R+++F F S+ Q++
Sbjct: 263 PKESTYCD----NPYSKYKEIAKNGIMVGLRRYQFFVFKDGGKAEKKKRNSTKQVKCYFI 318
Query: 358 ---ESSAWMFASRYGLTAAEIREWMGNFREIRNV---AKYAARLGQSFSSSKETLSVHMD 411
+++ + Y L+ I E +F + + A Y AR S +K+ L V M
Sbjct: 319 RTGSTASSDMENPYILSGMSIHEARMHFMHVHTLPSPANYMARFSLILSKTKK-LEVDMT 377
Query: 412 EIEIIP------------DVKIEIGKTKYVFSDGIGKVSAEFAR----KVASKCGLKDN- 454
EI ++ DV + GK + + SDG G +S + AR + ++ N
Sbjct: 378 EITVMQIDDIHCHDQSNNDVLDKNGKPR-IHSDGTGYISEDLARMCPLNIFKGKSMRSNN 436
Query: 455 --------PPSAFQIRY----GGYKGVVAADPT-SSKKLSLRDSMRK-YE-------SEL 493
PP QIR KG+ + + + +R SM K Y+ S
Sbjct: 437 IQGTCVQEPPLLIQIRMFNDGSAVKGIFLLNKNLPPQTVQVRPSMIKVYKDKNLSNFSTF 496
Query: 494 TKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEAL 552
L+V+ S + L++ L++LLS G+ ++ F + + I A +A
Sbjct: 497 NSLEVVTTSNPPKRAKLSKNLVALLSYGGVPNDFFLDILLNTLEKKKTIFFKVRAAGKAA 556
Query: 553 ELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT----RIFIPNGRS 608
++ N L ++++ G P EP+L L SKLL+L ++ I
Sbjct: 557 LHYGNMDDKNAL-QMIMAGI-PLDEPYLKHYL-----SKLLKLEKDDLKAGKLPIDESYY 609
Query: 609 MMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHP 668
+MG +D T L +V V + NP LH
Sbjct: 610 LMGTVDPTGELKEDEVCVIL----------------------------------NPGLHF 635
Query: 669 GDVRVLKAVNVPALHHMVD----CVVFPQKGMR 697
GD+ +LKA V +L V V FPQKG R
Sbjct: 636 GDIHILKATYVKSLEQYVGNSKYGVFFPQKGPR 668
>gi|356497593|ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine
max]
Length = 953
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 103/234 (44%), Gaps = 36/234 (15%)
Query: 478 KKLSLRDSMRKYESE-------LTKLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEK 529
+ + +R SM K E + + L+V+ S K + +L++ LI+LLS G+ +E F
Sbjct: 438 RTIQVRPSMIKVEKDPSVHMQSINSLEVVTTSNKPKRGYLSKHLIALLSFGGVPNEFFMD 497
Query: 530 KQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRA 589
R + + + ++ A A + N E+++CG P EPFL L F
Sbjct: 498 LLRSNMEDANHVYSNKRSALRASINCGEKDEYNA-AEMILCGI-PLDEPFLKHHLSRFAR 555
Query: 590 SKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSR 649
+ +LR ++++P+ +MG +D T L QV + +H S +
Sbjct: 556 EEKKKLRG-GKLYMPDCFYLMGTVDPTGHLKKNQVCI---------IHENSQIV------ 599
Query: 650 QRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH----HMVDCVVFPQKGMRYI 699
G V+V +NP LH GD+ + A V L H + FP+ G R +
Sbjct: 600 ------GDVLVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSV 647
>gi|242790556|ref|XP_002481575.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
gi|218718163|gb|EED17583.1| RNA-directed RNA polymerase, putative [Talaromyces stipitatus ATCC
10500]
Length = 1360
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 88/379 (23%), Positives = 151/379 (39%), Gaps = 63/379 (16%)
Query: 370 LTAAEIREWMGNFREIRNVA--KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 427
+T ++ +W E R+ K +RL + S + T+ V + +PD K
Sbjct: 614 MTVDQLIQWHTPLNENRSQTDCKLFSRLSLALSKTWATVVVRPHQFLKLPDAP-----DK 668
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD-----------PTS 476
V +DG +S AR + +K G+ PSAFQ R G KG+ D S
Sbjct: 669 PVMNDGCALMSRSLARDICTKLGIDGVTPSAFQGRIAGAKGLWMVDRDRGEDERFWIQVS 728
Query: 477 SKKLSLRDSMRKY----ESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQ 531
+L ++ R + + E +V+ WSK + +N QL+ +L+ G + +
Sbjct: 729 DSQLKVKPHPRDFFGHVDKEKITFEVVGWSKPLRSSEINTQLLEVLNNRG------QVRN 782
Query: 532 REAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAE------------PF 579
R A DAI + + + +E +N+ L LI +P+ E +
Sbjct: 783 RVADIARDAIRSIYSEFEIVME-----KNSIPLARALIQKIRPNTEDGHSRTNIRRIDQW 837
Query: 580 LSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY------ 633
LS +++ + LE R F P + CL +T Q+ + I + Y
Sbjct: 838 LSNNIESI--IRFLEAGFSPRDFHPLRERLRICLRDTLDRYVTQLHIPIPLSTYAYCIAD 895
Query: 634 -------RQLH-GESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHH 684
++H S + +V G+ V+V + P P D++ +AV L H
Sbjct: 896 PYGVLEENEVHFAFSGQWRDCAYFDDAMVDGVDVLVGRTPAHCPWDIQRRRAVWKSELRH 955
Query: 685 MVDCVVFPQKGMRYILTML 703
D +VF KG + ++L
Sbjct: 956 FKDVIVFSTKGTTPLASLL 974
>gi|343429506|emb|CBQ73079.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 1287
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM--MGCLDETRTLNYGQ 623
E+L+ G+ P+ +L+ +L A L + R IP RS M D T TL G+
Sbjct: 730 EMLLSGFHPEKCAYLADLLVEIAA--LAMSKVIKRFAIPVARSAEAMVIPDPTGTLEEGE 787
Query: 624 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 683
+ + S ++ + +R R + +G V+V ++PCL P D+R ++AV P L
Sbjct: 788 IQFRFSS--------DNIVDPDTRLRLTHVPEGQVLVTRHPCLLPTDIRKVRAVVRPELS 839
Query: 684 HMVDCVVFPQKGMRYILTML 703
D VVF KG R + ++L
Sbjct: 840 LYKDVVVFSTKGKRPLASLL 859
Score = 55.8 bits (133), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 22/171 (12%)
Query: 388 VAKYAAR--LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKV 445
+ KY R LG S S + ++ D E GK++ + +DG G VS AR +
Sbjct: 470 LGKYVQRVQLGLSTSVPASVIDKMTYVADVFGDADPETGKSQEM-TDGAGCVSLAVARDI 528
Query: 446 ASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKL---------SLRDSMRKYESELTK- 495
A G D+ PSAFQ R G KGV DP + + L +RDS K + K
Sbjct: 529 AQHLGY-DSIPSAFQGRVAGAKGVWYIDPAAERTLPNEKPVRWIEIRDSQNKIQYPQDKP 587
Query: 496 -------LDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQL 538
+D+L S+ + P L+RQ+I +L + G+ F QR ++ +
Sbjct: 588 LDLSQLVVDLLGPSRTFAPSTLSRQIILVLQSNGVPISTFADMQRAELQAI 638
>gi|340959153|gb|EGS20334.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1441
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 87/369 (23%), Positives = 150/369 (40%), Gaps = 49/369 (13%)
Query: 365 ASRYGLTAAEIREWMGNFR--EIRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKI 421
+SR+ + +++ +W+ E + K +R+ S + L+ +I D+
Sbjct: 641 SSRFQIKISQMLDWLLQLEHNEDQPYLKLFSRIQLGLSKTIPALTFEPHQIIHREKDILS 700
Query: 422 EIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV---AADPTSSK 478
IGK V +DGIG++S ARK+ GL D PSA Q R G KG+ AD +
Sbjct: 701 PIGK---VMNDGIGRMSRSVARKIRDALGLTDI-PSAIQGRMGSAKGMWLMDVADTSDED 756
Query: 479 KLSLRDSMRKYESELTK-----LDVLAW-SKYQPCFLNRQLISLLSTLG-----IWDEIF 527
+ S RK+ L+V + ++ +P LN Q + +L + I
Sbjct: 757 WIETYPSQRKWHCNWNDPAHRTLEVRSVPTELKPAGLNLQFLPILEAQAKDKAQMRYAIG 816
Query: 528 EKKQREAVRQLD---AILTDPLKAQEAL-ELMS-----------------PGENTNILKE 566
E+ +++ Q + + L PLK ++ + E S P L
Sbjct: 817 ERLKKDLETQFELQKSALNHPLKFRQWVNEDWSSRSERVRNGQVLFLGGLPESKHETLFF 876
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 626
LL G+ P + +L + + + L+TK I + + +D L +V +
Sbjct: 877 LLNSGFDPKKQKYLQKLAWELQYQRCELLKTKLNIKVGRSAYVYMVVDFWGMLEENEVHL 936
Query: 627 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV 686
S + F+ + V+VA++P DV+ ++AV P LH +
Sbjct: 937 GFSSRFCANTDLDQESFT-------LLADCDVLVARSPAHFVSDVQKVRAVFKPELHALK 989
Query: 687 DCVVFPQKG 695
D +VFP KG
Sbjct: 990 DVIVFPLKG 998
>gi|242216295|ref|XP_002473956.1| predicted protein [Postia placenta Mad-698-R]
gi|220726900|gb|EED80835.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 85/370 (22%), Positives = 139/370 (37%), Gaps = 89/370 (24%)
Query: 412 EIEIIPDV------KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
+IE I D+ ++ T+ +F+DG G ++ + G + P + Q R+ G
Sbjct: 561 DIEYIDDLVAPYHSSLKKAPTENIFTDGCGYMNGAALTAIGRLIGYSERP-TVVQGRFAG 619
Query: 466 YKGVVA-----ADPTSSKKLSLRDSMRKYESELTKL-------DVLAWSKYQ-PCFLNRQ 512
KG+ A +P + ++ +R S +K + KL D++A + P L+
Sbjct: 620 SKGLWALHPEDQEPNALPRMWIRSSQQKIKHHDEKLGPAQLTFDLVAPPRITIPARLSMY 679
Query: 513 LISLLSTLGIWDEIFEKKQRE-----------------------AVRQLDAILTDPLKAQ 549
I LS G+ DE F K ++ AV Q+ + L+ Q
Sbjct: 680 TIMNLSHNGVPDETFIKLMQDGLKKEVEALTTWDGPHAMVLLWHAVNQVGHVTLSKLRQQ 739
Query: 550 EA------------------------------LELMS---PGENTNI---LKELLICGYK 573
A LE+ S GE T++ + ELL G++
Sbjct: 740 AAGGARILGFGRAQDRDDWEDDDVDDGLEDETLEVGSLEYEGEPTSVSAAVLELLQAGFQ 799
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 633
P P L L+ A ++ + +I +P D L GQ+
Sbjct: 800 PLKLPLLYEKLRKVVADRIEDYIRNYKITVPRSAEAFIIPDPYGVLEEGQI--------- 850
Query: 634 RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 693
+L IV G V++ +NP P DVR +KAV+ P L V+ +V P
Sbjct: 851 -HFKSTQNLKDPLEESNPTIVTGDVLIYRNPTRVPSDVRKVKAVSHPKLDKYVNVIVLPV 909
Query: 694 KGMRYILTML 703
KG R + +L
Sbjct: 910 KGSRSLANIL 919
>gi|320587947|gb|EFX00422.1| RNA-dependent RNA polymerase [Grosmannia clavigera kw1407]
Length = 1358
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 91/384 (23%), Positives = 155/384 (40%), Gaps = 55/384 (14%)
Query: 358 ESSAWMFASRYGLTAAEIREWM---GNFREIRNVA--KYAARLGQSFSSSKETLSVHMDE 412
E S W F + L ++ EW+ F E R K +R+ S + T+ ++
Sbjct: 559 EDSEWRFG--HELQVHDMLEWLLQYNRFHENRTQPYLKLFSRIALGLSRTIPTVVFEPEQ 616
Query: 413 IEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAA 472
+ I T V +DGIG++S ARKV + GL D P+A Q R G KG+
Sbjct: 617 MRHHAS-DITAPATGKVMNDGIGRMSLSVARKVRFELGLSD-LPAAVQGRLGCAKGMWIL 674
Query: 473 DPTSSKK---LSLRDSMRKYESELTK-----LDVLAW-SKYQPCFLNRQLISLLSTLGI- 522
DPT + + S RK++ + L+V + S + LN+QL+ +L I
Sbjct: 675 DPTDTGGEDWIETYPSQRKWKCDFVDPDHRTLEVRNYASAVRSAGLNQQLLPVLEDRAID 734
Query: 523 -------WDEIFEKK-------QREAVR---------QLDAILTDPLKAQEALELMS--P 557
+I QR A+ Q ++ D A + + P
Sbjct: 735 KSRMRTVIGDILRGNLYRDLATQRTALEHPLLFSAWVQENSRSRDERSAHCQVRFLGGLP 794
Query: 558 GENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 617
++ +++ LL G+ P + + + + +K +L+ K + + + +D
Sbjct: 795 DSDSEVVQFLLSGGFDPRVQKMIWDVAYKIQKAKCEKLKEKLNVRVGRTAYLHMVVDFLG 854
Query: 618 TLNYGQVFV------QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDV 671
L G+V V Q+ G+ FS S +V V+VA++P DV
Sbjct: 855 VLEEGEVQVCFSSKFQVDADSEPDERGDDGSFSDS-----LLVGTDVLVARSPAHFASDV 909
Query: 672 RVLKAVNVPALHHMVDCVVFPQKG 695
+ ++AV L + D V+F +KG
Sbjct: 910 QRVRAVFRKELCVLKDVVIFSRKG 933
>gi|342876307|gb|EGU77937.1| hypothetical protein FOXB_11547 [Fusarium oxysporum Fo5176]
Length = 821
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 117/302 (38%), Gaps = 48/302 (15%)
Query: 430 FSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD----PTSSKKLSLRDS 485
+DGIG++ R+V GL D P+A Q R GG KG+ D P+ + + + S
Sbjct: 151 MNDGIGRIFHSLLREVRDVMGL-DFLPTAIQARIGGAKGLWMMDLSPYPSDERWIEIYPS 209
Query: 486 MRKYESELTK-----LDVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIF--------EKKQ 531
RK+ + L+V++ S Y P LN Q I +L I ++ EK +
Sbjct: 210 QRKWHCNWSDPAHRTLEVVSVSSYTGPASLNLQFIPILEERAIDRKLMRTTICERIEKHR 269
Query: 532 REAVRQLDAILTDPLKAQEALELMS------------------PGENTNILKELLICGYK 573
R + A + P ++ + S P + + L G++
Sbjct: 270 RNDLGNAKAAMEIPEVFRKWIHETSFTTFGDSQDGTSWFVGGLPADWPGTMSFLADGGFE 329
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 633
P FL+ M+ + + ++ TK I I S + +D L +V + S A
Sbjct: 330 PRRLDFLNTMMFNHQKQRWKQMETKLHIKIAKSTSALMTIDFQGVLAPNEVQLCFSPA-- 387
Query: 634 RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 693
F + + V+V + P P D++ + AV P L H + ++F
Sbjct: 388 ---------FDDGQQTLDDLGGFDVLVGRCPAHLPSDIQKVNAVFKPELRHFKNVIIFSS 438
Query: 694 KG 695
G
Sbjct: 439 LG 440
>gi|189208947|ref|XP_001940806.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976899|gb|EDU43525.1| RNA-directed RNA polymerase 2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 1436
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 18/142 (12%)
Query: 564 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 623
+K LL G+ P L+ LQ F +K + +K R+ + + G +D L GQ
Sbjct: 932 VKLLLESGFSPAKFQPLAQSLQRFIQAKQILQESKLRVPLAKSTFLFGIVDPFEVLEPGQ 991
Query: 624 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL----VVVAKNPCLHPGDVRVLKAVNV 679
+ VQ S S F+ + ++++ GL V+VA+ P D++ ++ V
Sbjct: 992 IQVQFS-----------SSFADDTTDEKYL--GLRDMEVLVARQPACRRSDIQKVRTVIR 1038
Query: 680 PALHHMVDCVVFPQKGMRYILT 701
P L H+VD VVFP +G RY L
Sbjct: 1039 PELSHLVDVVVFPSRG-RYPLA 1059
>gi|3687225|gb|AAC62123.1| hypothetical protein [Arabidopsis thaliana]
Length = 929
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 113/454 (24%), Positives = 174/454 (38%), Gaps = 121/454 (26%)
Query: 292 DNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAF 351
DN L + F D + SS I Y I +NGI+IG R+++F F
Sbjct: 212 DNVLTVKFADVQ-----------KSSSTYSIDHYFTYKGIA---KNGIMIGLRRYQFFVF 257
Query: 352 ------------SSSQLR------ESSAWM-FASRYGLTAAEIREWMGNFREIR---NVA 389
S+ +++ +S+A+ + Y LT I E +F + +A
Sbjct: 258 KDGGKEEKKKDLSTKKVKCYFIRTDSTAFYDMQNPYILTGKSIYEARMHFMHVHRAPTLA 317
Query: 390 KYAARLGQSFSSSKETLSVHM-----DEIEII----PDVKIEIGKTKY--VFSDGIGKVS 438
Y AR S +K TL V M D+I+ I D K + K K + SDG G +S
Sbjct: 318 NYMARFSLILSKTK-TLEVDMTGITFDQIDDIHCHDQDGKDVLDKNKKPCIHSDGTGYIS 376
Query: 439 AEFARKV-----ASKCGLKDN-PPSAFQIR--YGGY--KGVVAADPT-SSKKLSLRDSMR 487
+ AR KC ++ P Q R Y GY KG + + + +R SM
Sbjct: 377 EDLARMCPLNIFKGKCLRSESIQPLLIQFRMFYDGYAVKGTFLLNKKLCPRTVQVRPSMI 436
Query: 488 KYESELTKLDVLAWSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLK 547
K + P N + L + +IF A+ +
Sbjct: 437 KVSKD-------------PSLSNFSTFNALEVVTTRSQIFGAA---------ALNYGEMD 474
Query: 548 AQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGR 607
Q A +++ G I +P + +LS++L+T + +L+ ++ +
Sbjct: 475 DQNAAQMILVG----------IPLDEPHLKNYLSILLKTEKN----DLKA-GKLPVTESY 519
Query: 608 SMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLH 667
+MG +D T L +V V + Q+ GE V+V +NP LH
Sbjct: 520 YLMGTVDPTGALKEDEVCVILESG---QISGE------------------VLVYRNPGLH 558
Query: 668 PGDVRVLKAVNVPALHHMVD----CVVFPQKGMR 697
GD+ +LKA V AL V V FPQKG R
Sbjct: 559 FGDIHILKATYVKALEEYVGNSKFAVFFPQKGPR 592
>gi|429863502|gb|ELA37949.1| RNA-dependent RNA polymerase, partial [Colletotrichum
gloeosporioides Nara gc5]
Length = 989
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 88/367 (23%), Positives = 146/367 (39%), Gaps = 53/367 (14%)
Query: 367 RYGLTAAEIREWMGNF--REIRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKIEI 423
R L E+ +W+ E + K AR+ S + + D+I + DV I
Sbjct: 523 RQKLEVREMLDWLLQLDRNEDQLYLKLFARIQLGLSKTTAVAVLDQDQIRHMQKDVVSPI 582
Query: 424 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG---VVAADPTSSKKL 480
G+ V +DG+G++S ARKV L D P SA Q R G KG + D S +
Sbjct: 583 GQ---VMNDGVGRMSLSLARKVRDVLELSDVP-SAIQGRLGSAKGMWIIDVEDTGSDIWI 638
Query: 481 SLRDSMRKY-----ESELTKLDVLAW-SKYQPCFLNRQLISLLSTLGIWDEIFEKKQ--- 531
S RK+ E L++ + ++ + LN Q + +L +I K
Sbjct: 639 ETWPSQRKWNCDFLHQEHRTLEIKDFVAEPRSANLNIQFLPILEDRAKDKQIMRKVVGDN 698
Query: 532 --REAVRQLDAI---LTDPLK----------------AQEALELMS--PGENTNILKELL 568
R+ +L+A+ + PL+ A ++ ++ P L L
Sbjct: 699 VLRQLSDELEALRNAIKHPLQFRKWVDENSTARKKRLAHSSVPFLAGLPESKEEQLSYLG 758
Query: 569 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 628
G++P + F+ M+ ++ K + K I IPN + +D L +V V
Sbjct: 759 DGGFEPTKQKFMQDMMWKLQSKKCENVTKKMSIRIPNSAYLYMVVDFWGILEENEVHVCF 818
Query: 629 SGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDC 688
S + +S L V+VA++P D++ +KAV P L + +
Sbjct: 819 SSTFRTEGFSDSMLHGCD-----------VLVARSPAHLVSDIQRVKAVFKPELRALKNV 867
Query: 689 VVFPQKG 695
+VFP KG
Sbjct: 868 IVFPAKG 874
>gi|336378304|gb|EGO19462.1| hypothetical protein SERLADRAFT_478899 [Serpula lacrymans var.
lacrymans S7.9]
Length = 496
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 15/120 (12%)
Query: 584 LQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLF 643
L L EL+ + I +P +++G DE L G+++ +
Sbjct: 47 LHCASTHALRELKYRAHIAVPGSYTLLGVSDEWGCLREGEIYATVQ-------------- 92
Query: 644 SSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
R+ ++G VV+ ++P +HPGD++ + AV P L H+ + VVF +G R + + L
Sbjct: 93 -DERTGLYKPIEGPVVITRSPQVHPGDLQFVTAVRRPELSHLTNVVVFSCEGDRSLASCL 151
>gi|408393216|gb|EKJ72482.1| hypothetical protein FPSE_07363 [Fusarium pseudograminearum CS3096]
Length = 218
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 12/131 (9%)
Query: 305 DKIHSTDLSPRGSSATDITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMF 364
+++ + DL PR TR + + LR GI + + F +SQL+ S ++
Sbjct: 100 EQLPAPDLQPR-------TRQEVSDYSIRCLRAGITVNGVHYNFYGHINSQLKSRSCFLL 152
Query: 365 ASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 424
A+ + +I E + +F +++ V K A +G FSS+K ++ + D E IPDV+
Sbjct: 153 AATKEEISLQI-ESLEDFTKMKTVGKKAKCIGLLFSSAKTAMTTNPDRCEDIPDVET--- 208
Query: 425 KTKYVFSDGIG 435
Y+F+ G+
Sbjct: 209 -VDYIFTMGVA 218
>gi|403364990|gb|EJY82270.1| RNA-dependent RNA polymerase [Oxytricha trifallax]
Length = 126
Score = 54.3 bits (129), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 6/107 (5%)
Query: 393 ARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK 452
AR Q F+ ++ + +IE I D+ + K F+DG G +S E A ++ GL+
Sbjct: 12 ARAAQLFTGTRYICELKKTQIEYIGDI---VNYRKGNFTDGNGCISQELANRINRMYGLE 68
Query: 453 DNPPSAFQIRYGGYKG-VVAADPTSSKKLSLRDSMRKYESELTKLDV 498
D SA+Q R GG KG +V + + +R++M+K+E+ T L++
Sbjct: 69 DC--SAYQFRLGGCKGTLVVNQELQEEVIQIRNTMKKFENSDTSLNI 113
>gi|350635543|gb|EHA23904.1| hypothetical protein ASPNIDRAFT_40039 [Aspergillus niger ATCC 1015]
Length = 1307
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 83/362 (22%), Positives = 141/362 (38%), Gaps = 65/362 (17%)
Query: 390 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 449
K R + S + T+ + ++ +PDV +K V +DG +S A K+
Sbjct: 594 KLFQRFSLALSKTYATVVLQPRQVLPLPDV------SKPVMNDGCALMSRGLANKICDSL 647
Query: 450 GLKDNPPSAFQIRYGGYKGVVAADPTSSKK--------LSLRDSMRK-----------YE 490
GL PSAFQ R G KG+ D S + + DS K +
Sbjct: 648 GLTGYTPSAFQGRIAGAKGLWMVDKHQSHVSADDNDVWIQISDSQLKIKPHPCQWDESVD 707
Query: 491 SELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQ 549
E +V+ WSK P LN QL+S+L G E R ++ + + L++
Sbjct: 708 DEKLTFEVVKWSKPLHPVNLNIQLLSILDHGGHIKEHLADLTRLGIQSVYQEFANVLQSD 767
Query: 550 EALELMSPGENTNILKELLICGYKPDAEP-FLSMMLQTFRASKLLE------LRTKTRIF 602
A +L L+ +P + F + +T+R + +R F
Sbjct: 768 SA-----------VLCRSLVQKIRPSGDDGFGPVSQRTWRFENWMSSDAEFIIRLTEAGF 816
Query: 603 IPNG----RSMMG-CLDETRTLNYGQVFVQISGAGYR-------------QLH-GESSLF 643
P R +G CL E + ++ +++ + Y ++H G S+ +
Sbjct: 817 CPRSFYFLRKRLGKCLRELLKRHVDELRIEVPLSTYAFCIADPYGVLKEDEVHFGFSNNW 876
Query: 644 SSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILT 701
+ + + ++ G+ V+V + P P D++ KAV L H D +VFP G +
Sbjct: 877 RDGKGQFEDILLDGIDVLVGRLPAHLPSDIQRRKAVWKSELRHFKDVIVFPSVGSIPLAH 936
Query: 702 ML 703
ML
Sbjct: 937 ML 938
>gi|367049126|ref|XP_003654942.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
gi|347002206|gb|AEO68606.1| hypothetical protein THITE_2079458 [Thielavia terrestris NRRL 8126]
Length = 1373
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 92/373 (24%), Positives = 152/373 (40%), Gaps = 64/373 (17%)
Query: 367 RYGLTAAEIREWMGNFR--EIRNVAKYAARLGQSFSSSKETLSVHMDEI-EIIPDVKIEI 423
R + +E+ +W+ E + K +R+ S + T++ ++I D+
Sbjct: 603 RTEIRVSEMLDWLLQLEQNEYQPHLKLFSRIQLGLSKTFPTVTFEPNQIRHRTDDILSPA 662
Query: 424 GKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV---AADPTSSKKL 480
GK + +DGIG++S ARK+ GL D P SA Q R G KG+ AD +
Sbjct: 663 GK---IMNDGIGRMSRSVARKIRDALGLSDIP-SAIQGRMGSAKGMWLMDVADAGDDDWI 718
Query: 481 SLRDSMRKYESELTK-----LDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREA 534
S RK++ + L++ + S + +P LN Q + +L E K +
Sbjct: 719 ETYPSQRKWKCDDADALHRTLEIRSVSTELKPAALNLQFLPVL-------EDRAKDKARM 771
Query: 535 VRQLDAILTDPLKAQ---EALELMSP-------GENTNILKELLICGYKP-------DAE 577
R + A L + LK Q + + P E TN E + G P +
Sbjct: 772 RRAIAARLMNDLKKQFDSQKAAVERPLQFRQWVNECTNSRSERVRHGQVPFLGGLPENKG 831
Query: 578 PFLSMMLQTF--RASKLLE-------------LRTKTRIFIPNGRSMMGCLDETRTLNYG 622
LS +L + R K ++ LRTK I + M +D L
Sbjct: 832 EVLSFLLNSGFDRRQKYIQDLAFDLQKQRCEVLRTKLNIHVGRSAYMFMVVDFWGVLEEN 891
Query: 623 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
+V V S + +R +++ + V+VA++P P D++ ++AV P L
Sbjct: 892 EVHVGFS-SKFRDDVDDTTYM--------LLTDCDVLVARSPAHFPSDIQKVRAVFKPQL 942
Query: 683 HHMVDCVVFPQKG 695
H + D +VFP KG
Sbjct: 943 HALKDVIVFPAKG 955
>gi|389740950|gb|EIM82140.1| hypothetical protein STEHIDRAFT_124929 [Stereum hirsutum FP-91666
SS1]
Length = 982
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 11/119 (9%)
Query: 366 SRYGLTAAEIREWMG--NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV---- 419
SR+ L+ EI EW N + + +AK+AAR+ S+S L + D+I+ ++
Sbjct: 199 SRWHLSYFEILEWHNPLNLNQNQTMAKWAARIPLGLSNSVPGLVLKKDQIKAEAEIISPF 258
Query: 420 --KIEIGK--TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP 474
+GK ++ +DG G ++ FA K+ S L D PP+A Q+R G KG++ P
Sbjct: 259 HDPATVGKPPSEMEMTDGCGYINL-FAMKMLSSKKLWDKPPTAIQVRVAGAKGLLTIHP 316
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 10/137 (7%)
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 626
LL G+ P P L+ L+ + + + ++ +P + D LN G++ +
Sbjct: 488 LLDSGFTPQNNPVLASKLEKVIKGAVNKRLARCKVEVPMACTAFIIPDPFGVLNEGEIHI 547
Query: 627 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV 686
+ S ++ G S+ + G V+V +NPC P D++ + AV L
Sbjct: 548 KSSLTNLQRQDGLSTA----------QILGPVLVTRNPCKLPSDIQKVTAVFCAELRDYD 597
Query: 687 DCVVFPQKGMRYILTML 703
D +VF KG R + ++L
Sbjct: 598 DVIVFSTKGRRSLASLL 614
>gi|212534570|ref|XP_002147441.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
gi|210069840|gb|EEA23930.1| RNA-directed RNA polymerase, putative [Talaromyces marneffei ATCC
18224]
Length = 1361
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/318 (24%), Positives = 125/318 (39%), Gaps = 52/318 (16%)
Query: 427 KYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD-----------PT 475
K V +DG +S AR + ++ G+ PS FQ R G KG+ D
Sbjct: 668 KPVMNDGCALMSRPLARAICAELGIDGITPSTFQGRIAGAKGLWMVDRDLDDDKGFWIQI 727
Query: 476 SSKKLSLR----DSMRKYESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKK 530
S +L ++ D + E +V +WSK + LN QL+ +L+ G +
Sbjct: 728 SDSQLKVKPHPCDFFGHVDEEKITFEVASWSKPLRSSELNTQLLEVLNNRGQVRKRVADI 787
Query: 531 QREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLS--------- 581
REA+R + +E +M N+ L LI +P A+ S
Sbjct: 788 AREAIRDI---------YKEFENVME--RNSIPLARALIQKIRPTADDGYSRTNIRRIDQ 836
Query: 582 MMLQTFRAS-KLLELRTKTRIFIPNGRSMMGCLDET--RTLNYGQVFVQISGAGY----- 633
+ QT + + LE R F P M CL++T R +N + + +S Y
Sbjct: 837 WLSQTIESVIRFLEAGFSPRDFPPLRERMRICLNDTLNRYVNELHIPIPLSTYAYCIADP 896
Query: 634 ------RQLH-GESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHM 685
++H S + +V G V+V + P P D++ +AV L H
Sbjct: 897 YGVLEENEVHFAFSGQWRDCSYFDDAMVDGADVLVGRTPAHCPWDIQRRRAVWKSELRHF 956
Query: 686 VDCVVFPQKGMRYILTML 703
D +VF +G + ++L
Sbjct: 957 KDVIVFSTRGTTPLASLL 974
>gi|255956165|ref|XP_002568835.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590546|emb|CAP96738.1| Pc21g18410 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1430
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 76/324 (23%), Positives = 134/324 (41%), Gaps = 22/324 (6%)
Query: 398 SFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPS 457
S SK +V + +++ ++ T+ V +DG +S A ++ + G+ PS
Sbjct: 759 SLGLSKTFATVKLKPTQVL---RLRDDPTRPVMNDGCALMSRTLANQICDQLGITTATPS 815
Query: 458 AFQIRYGGYKGVVAADPTSSKKLSLRDSMRKY----ESELTKLDVLAWSKY-QPCFLNRQ 512
FQ R G KG+ S +L + +++ + E +V+ W+K P LN Q
Sbjct: 816 CFQGRIAGAKGLWMIQ-ISDSQLKIHPHPQEWVGPVDEEKLTFEVVNWAKQLHPVDLNIQ 874
Query: 513 LISLLSTLGIWDEIFEKKQREAVRQL-DAIL-----TDPLKAQEALELMSP-GENTNILK 565
L+++L G E K R+ V+ L D L P+ + L+ + P GE+
Sbjct: 875 LLAILEYGGNVKEYIAKLTRDGVQSLYDDFLEVLRSNSPVVCRALLQKLRPSGEDGTGKA 934
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP--NGRSMMGCLDETRTLNYGQ 623
L DAE + F LR K R ++ R++ + Y
Sbjct: 935 RRLEQWVTNDAESIIHFSEAGFAPRDFFPLRMKIRQYLTWLLERNVEELKIQVPLSTYAY 994
Query: 624 VFVQISGA-GYRQLH-GESSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNV 679
G G ++H G S+ + + + + ++ G+ V+V + P P D++ +AV
Sbjct: 995 CIADPYGVLGPDEVHFGFSNNWRDPQGQFEDNLLDGVDVLVGRLPAHLPSDIQRRRAVWK 1054
Query: 680 PALHHMVDCVVFPQKGMRYILTML 703
L H + +VFP G + ML
Sbjct: 1055 SELRHFKNVIVFPTTGEFPLAGML 1078
>gi|440464051|gb|ELQ33552.1| RNA-dependent RNA polymerase [Magnaporthe oryzae Y34]
gi|440477644|gb|ELQ58660.1| RNA-dependent RNA polymerase [Magnaporthe oryzae P131]
Length = 1738
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 134/342 (39%), Gaps = 60/342 (17%)
Query: 395 LGQSFSSSKET-----LSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 449
LG S + T L +H +E +++ V +DGIG +S AR+V
Sbjct: 552 LGSGLSRTHPTVVFAPLEIHAEEHDLM-------SPAGNVMNDGIGLMSRSVAREVQQIL 604
Query: 450 GLKDNPPSAFQIRYGGYKGVVAADP---TSSKKLSLRDSMRKY-----ESELTKLDVLAW 501
G++D P A Q R G KG+ DP + + + S RK+ +S L++
Sbjct: 605 GIQD-LPCAVQGRLGSAKGMWIIDPFDQSDDRWIKTYPSQRKWNCTSADSHHRTLEIKTH 663
Query: 502 SK-YQPCFLNRQLISLLS-----TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 555
+K + LN Q + +L G+ D I E + +L+++ Q+ L+ +
Sbjct: 664 AKPLRSASLNLQFLPVLHDRSKHKHGMRDSIGELLRTSLRTELESVQVALRSPQQFLQWV 723
Query: 556 S----------------------PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLL 593
P + +++ E++ G+ P + +L + + K
Sbjct: 724 HENSNHRQGLGNTSFEVPRLGGLPERDEDVMAEMVRAGFNPRGQKYLQDIAWNIQKQKCE 783
Query: 594 ELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFI 653
LR K I + + +D + G+V + S F+ +
Sbjct: 784 TLREKLNIKVGMSTYALMVVDFWGVVPEGEVHLCFS-----------EKFTCDGFSGTLL 832
Query: 654 VQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
V+VA++P + D++ +KAV P L + D +VF + G
Sbjct: 833 NDQEVLVARSPAHYVSDIQKVKAVFRPELKDLKDVIVFSRNG 874
>gi|46117554|ref|XP_384795.1| hypothetical protein FG04619.1 [Gibberella zeae PH-1]
Length = 1079
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 124/308 (40%), Gaps = 61/308 (19%)
Query: 426 TKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAAD---PTSSKKLSL 482
T V +DGIG+VS RKV + L D P+A Q R G KG+ D S L
Sbjct: 393 TGNVMNDGIGRVSLALMRKVQNALQL-DYLPAAIQGRIGSAKGLWVLDIGTQPSEIWLET 451
Query: 483 RDSMRKY-----ESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREA-V 535
+S RK+ + E L+VL+ S + LN Q IS+L + + + R A V
Sbjct: 452 YESQRKWNCDWKDPEHRTLEVLSQSSDLKTATLNHQFISILESRS----VDRRNTRAAMV 507
Query: 536 RQLDAILTDPL-KAQEAL---ELMS-----------------------PGENTNILKELL 568
+ + L L A+E++ EL P + L
Sbjct: 508 KHMKINLQTSLDHAKESMKQPELFRKWIHETSYASYGGRNESWFIGGLPKSWAEQMSFLS 567
Query: 569 ICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQI 628
G++P +L + S+ + K RI I + +D F +
Sbjct: 568 DGGFEPLHLRYLHNLTTNHMESQWKNTKEKMRIEISQSTWALMVVD----------FQGV 617
Query: 629 SGAGYRQLHGESSLFSSSRS---RQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHH 684
G QL FSS + +R+ ++G V+VA+ P P D++ +KAV P L H
Sbjct: 618 LGPDEVQL-----CFSSPFNDGFEKRYDLEGFDVIVARCPAHLPSDIQKVKAVFKPELRH 672
Query: 685 MVDCVVFP 692
+ D VVFP
Sbjct: 673 LKDVVVFP 680
>gi|302823993|ref|XP_002993644.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
gi|300138572|gb|EFJ05336.1| hypothetical protein SELMODRAFT_431698 [Selaginella moellendorffii]
Length = 884
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 130/333 (39%), Gaps = 76/333 (22%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR--YGG--YKGVVAADPT-SSKKLSLR 483
+ +DG G +S + A K P+ Q+R Y G KG + T K + R
Sbjct: 287 IHTDGTGFISEDLA---------KQEYPALLQVRLFYHGIAVKGTLLTLKTLQHKTIVYR 337
Query: 484 DSMRKYESE--------LTKLDVLAWSKYQP-CFLNRQLISLLSTLGIWDEIFEKKQREA 534
DSM K +++ L++ S P L+R +I+LL G+ + F + +EA
Sbjct: 338 DSMLKVKADPKLANCPSFNSLEICTTSHKPPVASLSRYVIALLLEGGVPESFFIQVVQEA 397
Query: 535 VRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 594
+ + L D A S G+ + + +++ G P + FL L T ++L +
Sbjct: 398 IAKAMTPLQDIAAAHRLCSRFSFGD---MPRRMILAGI-PLTDHFLRNSLMTMIRTQL-K 452
Query: 595 LRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIV 654
K + + +MG D T TL QV + + LH
Sbjct: 453 RYAKANVPLEGSYYLMGSADPTNTLARNQVAILLENG---PLHRHK-------------- 495
Query: 655 QGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVD----CVVFPQKGMRYIL---------- 700
V+V K+P +HPGDV V +A L + ++FP KG R ++
Sbjct: 496 ---VLVYKHPGMHPGDVHVFEATWNQELESSLGNSKYVIIFPTKGPRSVVHEIANSDLDG 552
Query: 701 ------------TMLKPRLLWYE--LNSSHALP 719
+ KP+L W E N + A+P
Sbjct: 553 DLYWICTNEQVSNLYKPQLPWQEKRTNGTTAVP 585
>gi|328861348|gb|EGG10451.1| hypothetical protein MELLADRAFT_103030 [Melampsora larici-populina
98AG31]
Length = 1075
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/165 (29%), Positives = 87/165 (52%), Gaps = 16/165 (9%)
Query: 395 LGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLK-D 453
L QS++ KE++ + ++ +++ + ++GK + + +DG +S A +++S L+ D
Sbjct: 300 LDQSYTLEKESMGLLLEFCQVL---EGQVGKAE-IMTDGAAAISRVAALQISSANNLQPD 355
Query: 454 NPPSAFQIRYGGYKGVVAADPTS-----SKKLSLRDSMRKYESELTKLDVLAWSKY---- 504
PS +Q R G KG+ DP S + + +RD+ K E + L +Y
Sbjct: 356 ILPSVYQGRIGFAKGLWYLDPNSNPLDTTTWIEIRDTQWKAEPHVGFLYHFNLCRYSVAV 415
Query: 505 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVR-QLDAILT-DPLK 547
L RQ + +LS+ GI +E+FE+ EA+R L+A T DP++
Sbjct: 416 NSTTLGRQNLRVLSSRGIPNEVFEELLEEAIRSSLEAFDTPDPME 460
>gi|389742384|gb|EIM83571.1| hypothetical protein STEHIDRAFT_101865 [Stereum hirsutum FP-91666
SS1]
Length = 987
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 87/399 (21%), Positives = 145/399 (36%), Gaps = 82/399 (20%)
Query: 370 LTAAEIREWMGNF--REIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIP-----DVKIE 422
L+ + W +F + V+K+ R S+S L D+IE+IP D+
Sbjct: 220 LSLGQFLSWHNSFSRNSKQAVSKWVTRFDLGLSTSVPVLQFAPDDIEVIPDKYPKDIDQS 279
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-----VAADPTSS 477
T+ +DG G ++ VA G +P +A Q R G KGV V DP S
Sbjct: 280 NASTEQTLTDGCGFMNMAALVAVARSMGFL-SPHTAVQGRIAGSKGVWMLHPVDRDPHSP 338
Query: 478 KKLSLRDS--------MRKYESELTKLDVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIFE 528
++ +RDS R ++ E D L S+ P L+ Q I + G+ +E F
Sbjct: 339 PRIWIRDSQVKIKLGDQRLWKREHLIFDFLGPSRVTYPGRLSMQFIINMEHNGVPNEAFA 398
Query: 529 KKQREAVRQ-LDAILT-----DPLKAQEALELMSPGENTNILK----------------- 565
+ +R+ +D ++ P ++AL+ M + + +
Sbjct: 399 LLMDDGLREHIDPLMKWDGPEAPHLLRDALDKMGNVSGSKVQQLAGSSRRALGLGQKFGR 458
Query: 566 --ELLICGYKPDAEP------------FLSMMLQTFRASKLLELRTKTR----------- 600
E + G + +P + M+ F + LRT+ R
Sbjct: 459 DNEQPLAGVEDGGDPAAEEAEIFCHERVMMMLAAGFTPKNAIYLRTELRELISREIEKWV 518
Query: 601 ----IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
I IP+ D L Q+F Q S G + S I++G
Sbjct: 519 KNYHIVIPHSAEAFIVPDPYGILEPDQIFFQSSVPLNDPATGMNMNIS--------ILEG 570
Query: 657 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
++ +NP P D++ + AV P D ++ KG
Sbjct: 571 PCLIGRNPARLPSDIQKVTAVYRPQYKEYKDVIICSIKG 609
>gi|398407389|ref|XP_003855160.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
gi|339475044|gb|EGP90136.1| RNA-directed RNA polymerase [Zymoseptoria tritici IPO323]
Length = 1316
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 75/322 (23%), Positives = 127/322 (39%), Gaps = 54/322 (16%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV------------VAADP-- 474
V SDG ++S K+ + G D+ SAFQ R GG KGV V P
Sbjct: 600 VMSDGCAELSRHAYWKICEQLG-GDHTRSAFQARIGGAKGVWYRAAEIDGSFDVGKPPGP 658
Query: 475 ----TSSKKLSLRDSMRKYESELTKLDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIFEK 529
S+ RDS+ + + K +V+ + Y +P L+ + +L G+ ++
Sbjct: 659 HITIVQSQIKVQRDSLEDCDPDQRKFNVVKANSYARPSLLHAGFMPILLDRGVPRQVMLD 718
Query: 530 KQREAVR-QLDA-----ILTDPLKAQEALELMS--------------------PGENTNI 563
R ++ ++DA + DPL + L + P
Sbjct: 719 VARTQIKAEVDACEAAIVSPDPLAFRMWLHSQNELYEERNRTRDGGIDTVAGWPIRREER 778
Query: 564 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT-RIFIPNGRSMMGCLDETRTLNYG 622
+ LL G+ P P+L+ + +L+ + +I + ++MG D L G
Sbjct: 779 IIRLLESGFVPTQCPYLARDVIDL-VKYTFDLKQRNFKIRLGRSTTLMGIADPKGCLEPG 837
Query: 623 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
+V V S + E SS + GL VA+NP + D++ ++ V P L
Sbjct: 838 EVHVNFSAPFIDPVTKEQFQNLSSPE----VAFGL--VARNPAMAAWDIQRVRFVYKPEL 891
Query: 683 HHMVDCVVFPQKGMRYILTMLK 704
H+ D VF +G R + + L+
Sbjct: 892 KHLTDLAVFSSRGHRPLASKLQ 913
>gi|353241158|emb|CCA72990.1| related to qde-1 RNA-dependent RNA polymerase (RdRP) [Piriformospora
indica DSM 11827]
Length = 1766
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 97/225 (43%), Gaps = 40/225 (17%)
Query: 382 FREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEF 441
+ E ++++K A RL FS + + + I ++ D++ + G VF+DG G ++
Sbjct: 945 YNEKQDMSKLATRLELGFSDTLPGVLLEPAHIHVVNDIENDDGT---VFTDGAGLMTPSL 1001
Query: 442 ARKVASKCGLKD-------NPPSAFQIRYGGYKGVVAADP--------TSSKKLSLRDSM 486
AR +A K KD + P A+QIR KGVV DP +L L SM
Sbjct: 1002 ARTLARKYPTKDQRDRDALDTPVAYQIRVQTAKGVVLIDPDMLVDRNFDGPHRLLLSKSM 1061
Query: 487 RKYE--------SELTKLDVLAWSKYQPCF-------------LNRQLISLLSTLGIWDE 525
K + + +L + C L+ Q I++LS+ G+ D+
Sbjct: 1062 CKAARGNKPLRPGPVNGMHILDAADCIVCIVKPAPVSASTGVRLSSQFITVLSSCGVPDD 1121
Query: 526 IFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLIC 570
+F + Q +A+ + TD ++ +E + ENT + LI
Sbjct: 1122 VFLQIQHDALEKELEAWTD-IETEEVNKGHRINENTRLRMASLIS 1165
>gi|389627942|ref|XP_003711624.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
gi|351643956|gb|EHA51817.1| RNA-dependent RNA polymerase [Magnaporthe oryzae 70-15]
Length = 1261
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/381 (20%), Positives = 149/381 (39%), Gaps = 65/381 (17%)
Query: 360 SAWMFASRYGLTAAEIREWMGNFREIRNV----AKYAARLGQSFSSSKET-----LSVHM 410
S ++F +R L + W+ ++N K +R+ S + T L +H
Sbjct: 509 SGYLF-TRTALPVHSMLNWLLQLDLVKNQRQPWPKLFSRIQLGLSRTHPTVVFAPLEIHA 567
Query: 411 DEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVV 470
+E +++ V +DGIG +S AR+V G++D P A Q R G KG+
Sbjct: 568 EEHDLM-------SPAGNVMNDGIGLMSRSVAREVQQILGIQD-LPCAVQGRLGSAKGMW 619
Query: 471 AADP---TSSKKLSLRDSMRKY-----ESELTKLDVLAWSK-YQPCFLNRQLISLLS--- 518
DP + + + S RK+ +S L++ +K + LN Q + +L
Sbjct: 620 IIDPFDQSDDRWIKTYPSQRKWNCTSADSHHRTLEIKTHAKPLRSASLNLQFLPVLHDRS 679
Query: 519 --TLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMS-------------------- 556
G+ D I E + +L+++ Q+ L+ +
Sbjct: 680 KHKHGMRDSIGELLRTSLRTELESVQVALRSPQQFLQWVHENSNHRQGLGNTSFEVPRLG 739
Query: 557 --PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLD 614
P + +++ E++ G+ P + +L + + K LR K I + + +D
Sbjct: 740 GLPERDEDVMAEMVRAGFNPRGQKYLQDIAWNIQKQKCETLREKLNIKVGMSTYALMVVD 799
Query: 615 ETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL 674
+ G+V + S F+ + V+VA++P + D++ +
Sbjct: 800 FWGVVPEGEVHLCFS-----------EKFTCDGFSGTLLNDQEVLVARSPAHYVSDIQKV 848
Query: 675 KAVNVPALHHMVDCVVFPQKG 695
KAV P L + D +VF + G
Sbjct: 849 KAVFRPELKDLKDVIVFSRNG 869
>gi|330915603|ref|XP_003297095.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
gi|311330417|gb|EFQ94809.1| hypothetical protein PTT_07392 [Pyrenophora teres f. teres 0-1]
Length = 1415
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 14/140 (10%)
Query: 564 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 623
+K LL G+ P L+ LQ F +K + +K R+ + + G +D L G+
Sbjct: 914 VKLLLESGFSPAKFSPLAQSLQRFIQAKQILQESKLRVPLAKSTFLFGIVDPLGVLEPGE 973
Query: 624 VFVQISGAGYRQLHGESSLFSSSRSRQRFIV--QGLVVVAKNPCLHPGDVRVLKAVNVPA 681
+ VQ S S F+ + ++++ V+VA+ P D++ ++ V
Sbjct: 974 IQVQFS-----------SSFADDTTDEKYLCLRDMEVLVARQPACRRSDIQKVRTVIRSE 1022
Query: 682 LHHMVDCVVFPQKGMRYILT 701
L H+VD VVFP KG RY L
Sbjct: 1023 LSHLVDVVVFPSKG-RYPLA 1041
>gi|70997928|ref|XP_753696.1| RNA-directed RNA polymerase [Aspergillus fumigatus Af293]
gi|66851332|gb|EAL91658.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus Af293]
Length = 1318
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 130/323 (40%), Gaps = 59/323 (18%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--------KL 480
V +DG +S A + + G+ N PSAFQ R G KG+ D +S +
Sbjct: 636 VMNDGCALMSRPLANAICDQLGITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDDFWI 695
Query: 481 SLRDSMRK-----------YESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFE 528
+ DS K + E +V+ WSK P LN QL+++L G E
Sbjct: 696 QISDSQLKIQPHPQAWRGPVDDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREHIA 755
Query: 529 KKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMM----- 583
+ R +R + L++ N+ L LI KP A+ LS +
Sbjct: 756 ELTRAGIRAISQDFASVLES-----------NSAALCRSLIQKIKPMADDGLSGINQRMK 804
Query: 584 -LQTFRAS------KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-- 634
L+ + A+ +L E R F P R + CL + ++ +++ + Y
Sbjct: 805 RLEQWTANDAEAIIRLTEAGFAPRSFYPLRRRLGRCLRDLLDRYVDELHIEVPLSTYAFC 864
Query: 635 -----------QLH-GESSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVP 680
++H G S+ + +R + + ++ G+ V+V + P P D++ +AV
Sbjct: 865 IADPYGVLKEDEVHFGFSNNWRDARGQFEDNLLDGVDVLVGRLPAHVPSDIQRRRAVWKT 924
Query: 681 ALHHMVDCVVFPQKGMRYILTML 703
L H D +VFP G + ML
Sbjct: 925 ELRHFKDVIVFPTTGDIPLAHML 947
>gi|451994086|gb|EMD86557.1| hypothetical protein COCHEDRAFT_1034369 [Cochliobolus
heterostrophus C5]
Length = 110
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 577 EPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL--NYGQVFVQISGAGYR 634
EPF+ +L +RA + L+ K RI I NG ++GC+DET+ L ++ +
Sbjct: 14 EPFIMSLLALWRACTIKNLKEKARIAIDNGAFLLGCVDETKKLKEHFNDPRSRRDATRDG 73
Query: 635 QLHGESSLF---SSSRSRQRF-IVQGLVVVAKNPCLH 667
+L +F S+ S+ + I++G+ +VA+NP LH
Sbjct: 74 KLATLPEIFLQVSNPNSKGHYIIIEGICIVARNPSLH 110
>gi|242207403|ref|XP_002469555.1| predicted protein [Postia placenta Mad-698-R]
gi|220731359|gb|EED85204.1| predicted protein [Postia placenta Mad-698-R]
Length = 1264
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 80/370 (21%), Positives = 137/370 (37%), Gaps = 89/370 (24%)
Query: 412 EIEIIPDV------KIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGG 465
+IE I D+ ++ T+ +F+DG G ++ + G + P + Q R+ G
Sbjct: 561 DIEYIDDLVAPYHPSLKKAPTENIFTDGCGYMNGAALTAIGRLIGYSERP-TVVQGRFAG 619
Query: 466 YKGVVA-----ADPTSSKKLSLRDSMRKYESELTKL-------DVLAWSKYQ-PCFLNRQ 512
KG+ A +P + ++ +R S +K + KL D++A + P L+
Sbjct: 620 SKGLWALHPDDQEPNALPRMWIRSSQQKIKHHDEKLGPAQLTFDLVAPPRITIPARLSMY 679
Query: 513 LISLLSTLGIWDEIFEKKQRE-----------------------AVRQLDAILTDPLKAQ 549
I LS G+ DE F K ++ AV Q+ + L+ Q
Sbjct: 680 TIMNLSHNGVPDETFIKLMQDGLKKEVEALTTWDGPHAMVLLWHAVNQVGHVTLSKLRQQ 739
Query: 550 EAL---------------------------------ELMSPGENTNI---LKELLICGYK 573
A L GE T++ + ELL G++
Sbjct: 740 AAGGARILGFGRAQDRDDWEDDDVDDGLEDETPEIGSLEYEGEPTSVSAAVLELLQAGFQ 799
Query: 574 PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGY 633
P P L L+ A ++ + +I +P D L ++ + +
Sbjct: 800 PLKLPLLYEKLRKVVADRIEDYIRNYKIAVPRSAEAFIIPDPYGVLEESEIHFKST---- 855
Query: 634 RQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQ 693
+L I+ G V++ +NP P DVR +KAV+ P L V+ +V P
Sbjct: 856 ------QNLQDPLEESNPTIITGDVLIYRNPTRVPSDVRKVKAVSHPKLDKYVNVIVLPV 909
Query: 694 KGMRYILTML 703
KG R + +L
Sbjct: 910 KGSRSLANIL 919
>gi|358369575|dbj|GAA86189.1| RNA-directed RNA polymerase [Aspergillus kawachii IFO 4308]
Length = 1306
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 81/361 (22%), Positives = 141/361 (39%), Gaps = 64/361 (17%)
Query: 390 KYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKC 449
K R + S + T+ +H ++ +PDV +K V +DG +S A ++
Sbjct: 593 KLFQRFSLALSKTYATVVLHPRQVLPLPDV------SKPVMNDGCALMSRSLANQICDSL 646
Query: 450 GLKDNPPSAFQIRYGGYKGV---------VAADPT-----SSKKLSLRDSMRKY----ES 491
GL PSAFQ R G KG+ V AD S +L +R ++ +
Sbjct: 647 GLTGYTPSAFQGRIAGAKGLWMVDKHRSHVTADDDVWIQISDSQLKIRPHPHEWDGSVDD 706
Query: 492 ELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQE 550
E +V+ WSK P QL+++L G R ++ L D L++
Sbjct: 707 EKLTFEVVKWSKPLHPVNQTIQLLNILDHGGHIRGHLADLTRLGIQSLYQEFADVLESDS 766
Query: 551 ALELMSPGENTNILKELLICGYKPDAEPFLSMMLQ-TFRASKLLE------LRTKTRIFI 603
A +L L+ +P + + Q T+R + +R F
Sbjct: 767 A-----------VLCRSLVQKIRPSGDDGFGRVSQRTWRFENWMSNDAEFIIRLTEAGFC 815
Query: 604 PNG----RSMMG-CLDETRTLNYGQVFVQISGAGYR-------------QLH-GESSLFS 644
P R +G CL E + ++ +++ + Y ++H G S+++
Sbjct: 816 PRSFHFLRKRLGKCLRELLKRHVDELRIEVPLSTYAFCIADPYGVLKEDEVHFGFSNVWR 875
Query: 645 SSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTM 702
+ + + ++ G+ V+V + P P D++ AV L H D +VFP G + M
Sbjct: 876 DGKGQFEDILLDGIDVLVGRLPAHLPSDIQRRTAVWKQELRHFKDVIVFPSVGNIPLAHM 935
Query: 703 L 703
L
Sbjct: 936 L 936
>gi|170091852|ref|XP_001877148.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648641|gb|EDR12884.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1193
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 60/154 (38%), Gaps = 27/154 (17%)
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 626
L+ G+ P P L L+ S + RI +P S D L G++F
Sbjct: 676 LIDAGFTPQTCPVLRSKLEKIVKSSVKNYIKAYRIDVPMSASAFLVPDILGVLKPGEIFY 735
Query: 627 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVL------------ 674
+ S RQ G + I+ G V++ ++PC P D++ +
Sbjct: 736 KSSRRNLRQTDGTET----------DIMLGDVLITRHPCKLPTDIQKVRASSQFMFVKHL 785
Query: 675 -----KAVNVPALHHMVDCVVFPQKGMRYILTML 703
KAV+ P LHH+ D +V P G R +L
Sbjct: 786 YSPQWKAVDRPELHHLTDVIVLPTTGDRRAADLL 819
>gi|302673317|ref|XP_003026345.1| expressed protein [Schizophyllum commune H4-8]
gi|300100027|gb|EFI91442.1| expressed protein [Schizophyllum commune H4-8]
Length = 984
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 31/176 (17%)
Query: 537 QLDAILT--DPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLE 594
Q++A LT DP +P + ELL G+KP +L + + +K+L+
Sbjct: 483 QMEAALTGRDPYSG-------APRSVHEQVVELLQAGFKPQECEYLRIKM-----AKVLD 530
Query: 595 LRTKT-----RIFIPNGRSMMGCL--DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSR 647
+ ++ R+ +P+ R + + D LN ++F S S
Sbjct: 531 MVCQSAVEDYRVPVPDSRGLNAFVVPDPLGVLNEDEIFYMPS----------PSFMDPKE 580
Query: 648 SRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
V+G V+V + P P D+R +KAVN PALH + ++ P G R ++++L
Sbjct: 581 QVMVQAVEGEVIVGRYPIRLPSDLRKVKAVNRPALHQYTNVILVPTVGERSLVSLL 636
>gi|159126570|gb|EDP51686.1| RNA-directed RNA polymerase, putative [Aspergillus fumigatus A1163]
Length = 1318
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 78/323 (24%), Positives = 129/323 (39%), Gaps = 59/323 (18%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK--------KL 480
V +DG +S A + + G+ N PSAFQ R G KG+ D +S +
Sbjct: 636 VMNDGCALMSRPLANAICDQLGITGNTPSAFQGRIAGAKGLWMVDRHNSGISGGGDDFWI 695
Query: 481 SLRDSMRK-----------YESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGIWDEIFE 528
+ DS K + E +V+ WSK P LN QL+++L G E
Sbjct: 696 QISDSQLKIQPHPQAWRGPVDDEKLTFEVVKWSKPLHPVELNTQLLAILEHGGQVREHIA 755
Query: 529 KKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMM----- 583
+ R +R + L++ N+ L LI KP A+ LS +
Sbjct: 756 ELTRAGIRAISQDFASVLES-----------NSAALCRSLIQKIKPMADDGLSGINQRMK 804
Query: 584 -LQTFRAS------KLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR-- 634
L+ + A+ +L E R F P R + CL + ++ +++ + Y
Sbjct: 805 RLEQWTANDAEAIIRLTEAGFAPRSFYPLRRRLGRCLRDLLDRYVDELHIEVPLSTYAFC 864
Query: 635 -----------QLH-GESSLFSSSRSR-QRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVP 680
++H G S+ + R + + ++ G+ V+V + P P D++ +AV
Sbjct: 865 IADPYGVLKEDEVHFGFSNNWRDVRGQFEDNLLDGVDVLVGRLPAHVPSDIQRRRAVWKT 924
Query: 681 ALHHMVDCVVFPQKGMRYILTML 703
L H D +VFP G + ML
Sbjct: 925 ELRHFKDVIVFPTTGDIPLAHML 947
>gi|296817563|ref|XP_002849118.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
gi|238839571|gb|EEQ29233.1| RNA-dependent RNA polymerase [Arthroderma otae CBS 113480]
Length = 1255
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 83/377 (22%), Positives = 146/377 (38%), Gaps = 50/377 (13%)
Query: 365 ASRYGLTAAEIREWMGNFREIRNVAKYA--ARLGQSFSSSKETLSVHMDEIEIIPDVKIE 422
SR +T ++ W + + ++ Y R+ S + T+++ +E+ D + E
Sbjct: 575 GSRTPMTVEQLVNWHILYPKNKHQEDYKLFNRIRLGLSRTTPTITLRPEEVIYDNDPRQE 634
Query: 423 IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAADPTSSKKL 480
SDG +S + + GL P+ FQ R+ G KG+ VA D +
Sbjct: 635 ------QMSDGCALISKSLGKAITDSLGLS-KVPACFQGRFAGAKGIWIVARDDQCPQVN 687
Query: 481 SLRDSM---RKY----------------------ESELTKLDVLAWSKY-QPCFLNRQLI 514
LR + R Y + DV ++++ Q +LN Q +
Sbjct: 688 GLRQTFETDRGYWMVINASQLKVKPPPCDRGVLLDKHQMTFDVSSYARTPQSVYLNTQFL 747
Query: 515 SLLSTLGIWDEIFE-KKQREAVRQLDAILT-----DPLKAQEALELMSPGENTNILKELL 568
+L GI E Q EA + D L D ++ ++ M + +K +
Sbjct: 748 MVLQNAGINKEYLSFIIQMEADKFYDGYLEIIRTGDSAACRDWIKRMG---GSTAVKATM 804
Query: 569 ICGYKPDAEPFLSMMLQT-FRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQ 627
G+ PD + M+L F SKL LR + + N +G L + + V+
Sbjct: 805 SDGFPPDTLGQIIMLLDAGFLPSKLYFLRRLFKFYFDNYLQKLGDL-KIKIPKSTYVYCI 863
Query: 628 ISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMV 686
G + GE L + G+ ++VA+ P P D++ +A+ PAL H+
Sbjct: 864 ADPYGVLE-EGEVHLAPGDNWEDTPDLDGIDILVARAPAHLPSDIQKCRAIFHPALRHLK 922
Query: 687 DCVVFPQKGMRYILTML 703
+F KG + ++L
Sbjct: 923 GVAIFSTKGDVPLASLL 939
>gi|268565349|ref|XP_002639417.1| Hypothetical protein CBG04006 [Caenorhabditis briggsae]
Length = 797
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 28/39 (71%)
Query: 659 VVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMR 697
+V K P + GD+R+ +AV++P LHH+ D +VFPQ G R
Sbjct: 1 MVTKFPTMCAGDIRMYEAVDIPELHHLTDVIVFPQSGPR 39
>gi|402074256|gb|EJT69785.1| RNA-dependent RNA polymerase [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 1442
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/295 (24%), Positives = 125/295 (42%), Gaps = 33/295 (11%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG---VVAADPTSSKKLSLRDS 485
V +DG+G +S A+K+ GL P A Q R G KG + D + + S
Sbjct: 731 VMNDGVGLMSRSVAQKIQKTLGLV-TVPCAVQGRLGSAKGMWIIDVEDLSGEDWIETYPS 789
Query: 486 MRKYESELTKLDVLAW------SKYQPCFLNRQLISLLST---------LGIWDEIFEKK 530
RK+E ++ D S+ + LN Q + +L + D + E
Sbjct: 790 QRKWECDIGDPDQRTLEVRSHASELRSARLNLQFLPVLEDRSRDKDAFRTAVGDLLGENL 849
Query: 531 QREAVRQLDAILTDPLKAQEALELMSPGENTNILK-ELLICGYKPDA-EPFLSMML-QTF 587
Q E + L A L P++ ++ + S +T + ++ G PD E ++MML F
Sbjct: 850 QTE-LGGLRAALNRPIQHRQWVHENSSNRDTRVRHGQVPFLGGSPDKDEELMNMMLDHGF 908
Query: 588 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ---VFVQISGAGYRQLHGESSLFS 644
K L+ + + L E + G+ ++ + G+ + FS
Sbjct: 909 DPKKQKYLQDLAWVL---QKKKCETLKEKLNITVGKSAYAYMVVDFGGHLEPDEVHMCFS 965
Query: 645 SSRSRQRF---IVQGL-VVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKG 695
S F ++ G+ ++VA++P + D++ +KAV PAL + D +VFP+KG
Sbjct: 966 SKFQVDDFADTLLDGIELLVARSPAHYISDIQKVKAVFKPALKDLKDVIVFPRKG 1020
>gi|407919378|gb|EKG12628.1| RNA-dependent RNA polymerase eukaryotic-type [Macrophomina phaseolina
MS6]
Length = 1485
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 76/317 (23%), Positives = 128/317 (40%), Gaps = 59/317 (18%)
Query: 425 KTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV----VAADPTSSKKL 480
+ K V +DG +S ARK+ + + PS FQ R GG KG+ + D T S+ L
Sbjct: 718 RPKRVMNDGCSLISVGAARKLWEQTNRTEPLPSTFQGRIGGAKGMWMISDSPDTTDSRHL 777
Query: 481 ----SLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLISLLSTLG--------------- 521
+ DS K+++ + + S+Y P L L S T G
Sbjct: 778 KVWIQISDSQLKFKAHS---EDQSESEYDPHRLTFDLHSTTGTAGESSVYLSFFPILENR 834
Query: 522 -----IWDEIFEKK-QREAVRQLDAI-----LTDPLKAQEAL-ELMSPGENTNIL----- 564
++FE RE + L ++ L L Q +L E + EN
Sbjct: 835 GVSAKALQKLFESHLDREREKILASVTNRVGLRTWLNQQNSLAEERNRDENMTWQASMPL 894
Query: 565 ----KELLIC--GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 618
K +L+ G+ + +L+ + A L LR R+ +P + G D
Sbjct: 895 QLHEKAILLAESGFDISCD-YLADVAHRLLAKSLRLLRQNIRVPLPRCTYIKGVADPLGV 953
Query: 619 LNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
L G++ V + ++ G+ + ++R+ V+VA+NP L D++ +++
Sbjct: 954 LKPGEIHVHFTRRFVDEVSGDCLSYLNNRN---------VLVARNPALRASDIQKVRSTF 1004
Query: 679 VPALHHMVDCVVFPQKG 695
L H+ D VVFP +G
Sbjct: 1005 NLRLGHLKDVVVFPTRG 1021
>gi|443894414|dbj|GAC71762.1| RNA-directed RNA polymerase QDE-1 [Pseudozyma antarctica T-34]
Length = 1339
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 8/138 (5%)
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
++L G+ P + +L+ L + + ++ + + I M D T TL G++
Sbjct: 767 DMLKIGFHPRSCSYLAGFLVEIADTAMKKVTQRFAVSIARSAEAMVIPDPTGTLEEGEIQ 826
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
+ SG +S SR + +G V+V ++PCL P D+R ++AV L
Sbjct: 827 FRFSG--------DSICDPDSRLALHHVPEGDVLVTRHPCLLPTDIRKVRAVVRSELSRF 878
Query: 686 VDCVVFPQKGMRYILTML 703
D VVF KG + ++L
Sbjct: 879 QDVVVFSTKGHTPLASLL 896
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/225 (26%), Positives = 99/225 (44%), Gaps = 37/225 (16%)
Query: 352 SSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSKETLSVHMD 411
SS+Q W F + AA +G F I+ + +LG S S T+ D
Sbjct: 486 SSAQPEFDCVWDFVDHHAPFAANGSSQLGKF--IQRI-----QLGLSTSVPASTI----D 534
Query: 412 EIEIIPDVKIE---IGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKG 468
I + D++ + + + + +DG +S AR VA + L + PSA Q R G KG
Sbjct: 535 TITYVSDLRGDPHPVTGEQVIMTDGAATMSLAVARDVAQRLSLT-SVPSAIQARVAGAKG 593
Query: 469 VVAADPTSS---------KKLSLRDSMRKYE------SELTK--LDVLAWSK-YQPCFLN 510
V DP + + + +R S K E +L++ LD+L S+ P L+
Sbjct: 594 VWYLDPNAQSWLPGEEPKRWIHIRKSQNKIEYPRDEPRDLSQQVLDLLTASRTTSPSSLS 653
Query: 511 RQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELM 555
+Q+I +L + G+ E F Q+ +R +TD + E +L+
Sbjct: 654 KQIILVLHSNGVPTETFAALQQAELR----AITDSISNWEGPDLL 694
>gi|453087546|gb|EMF15587.1| hypothetical protein SEPMUDRAFT_123844 [Mycosphaerella populorum
SO2202]
Length = 1406
Score = 49.7 bits (117), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 128/331 (38%), Gaps = 67/331 (20%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV------VAADP-------- 474
V SDG ++S A + + K LK P+ QIR G KG+ DP
Sbjct: 714 VMSDGCNRMSYWIAYQYSKKLCLK-RVPATLQIRAAGAKGLWYIDEPAHGDPDIRPAGPL 772
Query: 475 ---TSSKKLSLRDSMRKYESELTKLDVL-AWSKYQPCFLNRQLISLLSTLGIWDEIFEKK 530
S+ RD+ + E ++V+ A +P L+ + +L G+ E
Sbjct: 773 LNLAPSQVKVHRDTFYGCDEETLSVNVVKANPGARPSLLHIGYLPILVDRGVPLENIRTL 832
Query: 531 QREAV-RQLDAILTDPLKAQEALELMS------------------------PGENTNILK 565
R+ V RQ D L + L A +L L P +
Sbjct: 833 VRDLVTRQTDGFL-EALAADGSLRLRQWIASHNEFFEARRREAGIDLLAGFPKALEERII 891
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKT-RIFIPNGRS-----------MMGCL 613
++L G+ P +L+ ++ AS +L+ K +I +P + M G L
Sbjct: 892 QMLEAGFAPKQNKYLASEVKML-ASSYFDLKNKNFKIELPKSTTLWGIAEPKTGHMRGKL 950
Query: 614 DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRV 673
D T +L G+V V E + +R F+ ++VA+NP + P D++
Sbjct: 951 DPTGSLRPGEVCVCFE---------EPFDVADVGTRVNFLDDIDILVARNPAMGPSDIQK 1001
Query: 674 LKAVNVPALHHMVDCVVFPQKGMRYILTMLK 704
++AV P L ++F +GMR + L+
Sbjct: 1002 VRAVFKPQLAKYAGNIIFSARGMRPLANKLQ 1032
>gi|299747734|ref|XP_001837224.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
gi|298407654|gb|EAU84841.2| hypothetical protein CC1G_00360 [Coprinopsis cinerea okayama7#130]
Length = 1039
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 61/144 (42%), Gaps = 12/144 (8%)
Query: 556 SPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDE 615
SP + LL G+ P P L+ L+ +++ L RI +P M D+
Sbjct: 520 SPSSLEETVLALLQSGFHPGFCPVLAEKLKAVIRTRVSRLTHSYRIEVPMSCMAMIVPDK 579
Query: 616 TRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR--V 673
L G++F + S GE + I+ G V++ + PC P D++
Sbjct: 580 RGILKEGEIFFRSSHRDLLDRDGEKT----------DIITGDVLITRYPCKLPTDIQKAS 629
Query: 674 LKAVNVPALHHMVDCVVFPQKGMR 697
KAV+ P LH +V ++ KG R
Sbjct: 630 CKAVDHPGLHDLVGVIILSTKGTR 653
>gi|409051063|gb|EKM60539.1| hypothetical protein PHACADRAFT_82474, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 639
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 10/112 (8%)
Query: 597 TKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQG 656
+K R+ +P S D T L G+++V+ S + L S+ + ++ G
Sbjct: 392 SKYRVNVPMSCSAWAVPDPTGVLEAGEIYVESS----------APLLSADGKTEADVIVG 441
Query: 657 LVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTMLKPRLL 708
V++ ++PC P DV+ +KAVN L D VV KG R +L LL
Sbjct: 442 DVLITRHPCKVPSDVQKVKAVNRRELRGYKDLVVVSTKGHRVQTQLLDRHLL 493
>gi|402219719|gb|EJT99791.1| hypothetical protein DACRYDRAFT_100977 [Dacryopinax sp. DJM-731
SS1]
Length = 1204
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 81/167 (48%), Gaps = 21/167 (12%)
Query: 381 NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDV------KIEIGKTKYVFSDGI 434
N + + K+A R+ +SSS + + I+++ D+ + + +DG
Sbjct: 481 NLNQKQTSGKWAKRMQLLWSSSVPGPRLEAENIKMVDDIIAPSFRHLPKAPAERDMTDGA 540
Query: 435 GKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV-----VAADPTSSKKLSLRDS---M 486
G ++ AR + ++ GL+ +PP A Q R GG KG+ + +D + + R S +
Sbjct: 541 GLMTYAVARDIQARLGLR-HPPCAVQYRTGGLKGMWVLRALTSDDDGHRFVWYRPSQLKI 599
Query: 487 RKYESELTK-----LDVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIF 527
R ES+L K ++VL+ SK P L QL+ LL+ G+ +++
Sbjct: 600 RHSESQLEKNALRTIEVLSPSKLSAPARLTTQLVVLLAENGVPNKLL 646
>gi|147767777|emb|CAN71520.1| hypothetical protein VITISV_042316 [Vitis vinifera]
Length = 1202
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 98/228 (42%), Gaps = 43/228 (18%)
Query: 455 PPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFLNRQLI 514
PP QIR K V DP KLS ++ E T ++ + +L++ LI
Sbjct: 749 PPRTIQIRPSMIK--VETDP----KLSDTQTVNSVEINGTS------NQPRRSYLSKYLI 796
Query: 515 SLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKP 574
+LLS G+ +E F ++A+ ++ + L+ E + +I+ +++ G P
Sbjct: 797 ALLSYGGVPNEYFMNLLKDALEDAPSVQSISLRFDEM--------DDSIVTRMILSGI-P 847
Query: 575 DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYR 634
EPFL L + LR ++ + + +MG D T L +V + +
Sbjct: 848 IDEPFLQHRLSFMVNEERKGLRV-GKLPVNDCFYLMGTADPTGKLKSDEVCIILD----- 901
Query: 635 QLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
HG+ VQG V+V K+P LH GD+ VL A V AL
Sbjct: 902 --HGQ--------------VQGRVLVYKHPGLHFGDIHVLNATYVEAL 933
>gi|302413493|ref|XP_003004579.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
gi|261357155|gb|EEY19583.1| RNA-dependent RNA polymerase [Verticillium albo-atrum VaMs.102]
Length = 139
Score = 48.1 bits (113), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 73/167 (43%), Gaps = 33/167 (19%)
Query: 509 LNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELL 568
LNRQ+I +L +G+ DE F +Q+ + + A+ NT
Sbjct: 3 LNRQMIKILEDMGVRDEWFFSQQKRELERRHAVTAGAW-------------NTGAF---- 45
Query: 569 ICGYKPDAEPFLSMMLQTFRASKLLELRT---KTRIFIPNGRSMMGCLDETRTLNYGQVF 625
C K A L+ + R++ L ELR K RI +P G ++ G +DE+ L+ G+V
Sbjct: 46 -CSSKASAR-HLTSRHSSRRSTMLKELRLLKFKARIPMPQGVTLFGIMDESGFLSEGEVS 103
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 672
V S ++ S + G + V ++P L+PGD++
Sbjct: 104 VCY-----------DSCYNGSLPIDSTLNDGNIPVIRSPALYPGDIQ 139
>gi|406700852|gb|EKD04014.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
8904]
Length = 1087
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 71/309 (22%), Positives = 125/309 (40%), Gaps = 69/309 (22%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDN--PPSAFQIRYGGYKGVVA-----ADPTSSKKLS 481
+ SDG G +S +K+ D PP + Q+R GG KGV++ + +
Sbjct: 447 ILSDGCGLMS----QKILHHPFFADLRWPPCSVQMRLGGSKGVLSLMSREQEEEYDADVV 502
Query: 482 LRDSMRKYES--------ELTKLDVLAWSKYQ-PCFLNRQLISLLSTLGIW-DEIFEKKQ 531
LR SM K +S + LDVL + C L+ + I ++ G+ D + K +
Sbjct: 503 LRPSMIKSKSAAGFSDDPSVLTLDVLKVDGLKVGCNLSSEAIIIMEDRGVPPDVLIAKAE 562
Query: 532 REAVRQLDAILTDPLKAQEALELMSPGENTNILKELLI-----------------CGYKP 574
E + +++L P PGEN + +++ L+ C
Sbjct: 563 LEFEKIRESLLPVP----------HPGENEDDVRQRLLHAVYTLGGVGSEREKRRCRQLG 612
Query: 575 DAEPFLSMMLQTFR----------ASKLLELRTKTRIFIPNGRSMMGCL--DETRTLNYG 622
+ + L++ + A K L R + +P +S+ + D L
Sbjct: 613 KSTKVAGLSLESTQQDEYEEDTSVAEKSLTDRAVSDFKLPVDQSLSALIVPDTLGVLKPN 672
Query: 623 QVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPAL 682
++++ S A +L + S R V+G V++ ++PC P DVR ++AV L
Sbjct: 673 EIYIAPSSA---------ALVNPSTMRPMSCVEGDVLIFRSPCKLPTDVRKMRAVYHSKL 723
Query: 683 HHMVDCVVF 691
H+ DC+V
Sbjct: 724 KHLQDCIVM 732
>gi|426198482|gb|EKV48408.1| RNA-dependent RNA polymerase [Agaricus bisporus var. bisporus H97]
Length = 1114
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 19/152 (12%)
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
E L G+ P P L + S + I +P D + L +VF
Sbjct: 631 EFLDSGFHPKTCPVLREKMHKVVHSAISRAVENYTIELPFSAGAWIIPDPSGCLGSNEVF 690
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
Q S + + + I+ G V++ ++PC P DV+ KA++VP LH
Sbjct: 691 FQCSRS-----------LPALDGTETHIITGDVLITRDPCRLPTDVQKWKAIDVPELHQY 739
Query: 686 VDCVVFPQKGMRYILTML--------KPRLLW 709
D ++ +G R L K +L+W
Sbjct: 740 KDVIILSVQGPRRAADWLAGGDYDGDKAKLIW 771
>gi|353241842|emb|CCA73629.1| hypothetical protein PIIN_07582 [Piriformospora indica DSM 11827]
Length = 1021
Score = 47.4 bits (111), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 381 NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAE 440
+F + + + K A RL S + V M +E +I + YVF+DG G+VS
Sbjct: 282 SFNKEQPICKLATRLHLGVSDTSPGPLVEMIYVED------DIKRDGYVFTDGSGEVSGP 335
Query: 441 FARKVASKCGLKDNPPSAFQIRYGGYKGVV 470
R+ +KC N SA+QIR KG+V
Sbjct: 336 LLRRFRAKCPQARNEASAYQIRISTAKGIV 365
>gi|409079756|gb|EKM80117.1| hypothetical protein AGABI1DRAFT_127795 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1114
Score = 47.4 bits (111), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 19/152 (12%)
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
E L G+ P P L + S + I +P D + L +VF
Sbjct: 631 EFLDSGFHPQTCPVLREKMHKVVRSAISRAVENYTIELPFSAGAWIIPDPSGCLESNEVF 690
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
Q S + + + I+ G V++ ++PC P DV+ KA++VP LH
Sbjct: 691 FQCSRS-----------LPALDGTETHIITGDVLITRDPCRLPTDVQKWKAIDVPELHQY 739
Query: 686 VDCVVFPQKGMRYILTML--------KPRLLW 709
D ++ +G R L K +L+W
Sbjct: 740 KDVIILSVQGPRRAADWLAGGDYDGDKAKLIW 771
Score = 43.1 bits (100), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 91/246 (36%), Gaps = 46/246 (18%)
Query: 266 TPSRVYFCGPEINV-----SNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSAT 320
+P F E+N SN RHF FLR+S D L + H
Sbjct: 258 SPDNKKFLKIELNAAKLGPSNSFSRHFGSKY--FLRLSMSDSRLGQAH------------ 303
Query: 321 DITRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQL---RESSAWMFA--------SRYG 369
+ IL LR +++ F + R + W S G
Sbjct: 304 -------HLNILDYLRKPVILCQHIFRAFYLKDQHVYYFRTNEVWDVGKQIISPLLSSPG 356
Query: 370 LTAAEIREWMG--NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTK 427
L+ E +W + + +AK+A+R S S ++ I I D++ +
Sbjct: 357 LSFMEFVQWHNPIELNQRQTMAKWASRFALGLSPSILGFTLDEKNIRFIKDIRSNVNSD- 415
Query: 428 YVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP---TSSKKLSLRD 484
+DG G ++ +K++ N PSA Q+R G KG++ +P S + LR
Sbjct: 416 --MTDGAGYITRHLLQKLSVLHNW-GNRPSAIQVRVRGSKGLLVENPDVKDESLSIKLRP 472
Query: 485 SMRKYE 490
S+ K +
Sbjct: 473 SLMKID 478
>gi|393232270|gb|EJD39854.1| hypothetical protein AURDEDRAFT_171128 [Auricularia delicata
TFB-10046 SS5]
Length = 1291
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 14/154 (9%)
Query: 550 EALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSM 609
+A E ++P + +L G+ P P L ++T + + K R+ I
Sbjct: 791 DAQEYLTPAA---MALRMLFSGFDPVTCPILRSHIRTVLRTSTEQYLKKFRVEITMSAEA 847
Query: 610 MGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPG 669
M D + L ++F+ S + + R + G V+V +NP P
Sbjct: 848 MIISDTSLVLGENEIFL-----------SSSKVLLDNSGRTMNHLSGDVLVYRNPVRLPC 896
Query: 670 DVRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
D++ +KAV P L H D +VF KG R + + L
Sbjct: 897 DIQKVKAVYKPELDHYRDVIVFSAKGTRSLASKL 930
>gi|403411358|emb|CCL98058.1| predicted protein [Fibroporia radiculosa]
Length = 1270
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 62/153 (40%), Gaps = 13/153 (8%)
Query: 554 LMSPGENTNI---LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMM 610
L+ PGE ++ + ELL G+ P P L L+ ++ E + RI + N
Sbjct: 767 LIFPGEPQSVHGAVLELLQAGFHPLELPILYEKLRQIVEKRIEEFIKEYRIVLENSAEAF 826
Query: 611 GCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGD 670
D L GQ+ Q +L + G V++ +NP P D
Sbjct: 827 IMPDPYGVLEEGQI----------QFIATQNLKDPLEDPMPMAITGEVLLYRNPARVPSD 876
Query: 671 VRVLKAVNVPALHHMVDCVVFPQKGMRYILTML 703
VR + AV P L V+ +V P KG R + +L
Sbjct: 877 VRKVIAVVHPKLVEYVNVIVLPTKGKRSLANIL 909
>gi|361130936|gb|EHL02666.1| putative RNA-dependent RNA polymerase 2 [Glarea lozoyensis 74030]
Length = 902
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 67/159 (42%), Gaps = 35/159 (22%)
Query: 408 VHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYK 467
+ + ++ IPDV+ + FSDG+G + K
Sbjct: 384 IDLRHVQEIPDVE----RNGRTFSDGVGTSA----------------------------K 411
Query: 468 GVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPC--FLNRQLISLLSTLGIWD 524
G+++ D L +RDSM K+ + + + Y+P +LNRQLI +L +G+ D
Sbjct: 412 GMISLDSRLKGNVLVVRDSMIKFRGSKSADLEICEAAYRPLPMYLNRQLIKILEDMGVED 471
Query: 525 EIFEKKQREAVRQLDAILTDPLKAQEALELMSPGENTNI 563
+ F Q V L A +P+ A + L S GE ++
Sbjct: 472 DYFLNLQAREVESLRAAADNPMSASKFLTKQSIGETVHL 510
>gi|392562423|gb|EIW55603.1| hypothetical protein TRAVEDRAFT_128797, partial [Trametes
versicolor FP-101664 SS1]
Length = 894
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 10/132 (7%)
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 626
L+ G+ P P L L + +TK R +P S D L ++ V
Sbjct: 418 LIDAGFTPQTCPVLRAKLMEVAKKVVTTFKTKYRFAVPMSCSAFIVPDPYGVLGPNEIHV 477
Query: 627 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV 686
+ S + G RQ IV G V+V ++PC P DV+ +KAV L H
Sbjct: 478 KCSRRDFVDQEG----------RQTDIVLGDVLVTRHPCKVPSDVQKVKAVFHERLRHYC 527
Query: 687 DCVVFPQKGMRY 698
+ +V K Y
Sbjct: 528 NVIVVSTKSHTY 539
>gi|145531992|ref|XP_001451757.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419423|emb|CAK84360.1| unnamed protein product [Paramecium tetraurelia]
Length = 1257
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 56/300 (18%), Positives = 132/300 (44%), Gaps = 27/300 (9%)
Query: 335 LRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREW-MGNFRE---IRNVAK 390
L G I +++FL +++ +LR + WM ++ E+ + + NF++ ++ A+
Sbjct: 629 LTEGFTICSEQWKFLGWNNKELRSNIIWM----NKVSNKELDNYILANFKQNSTLQQKAE 684
Query: 391 YAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCG 450
+R F L+ ++ II ++ +I + + G++S K+
Sbjct: 685 VKSRFRNFFIDG---LTTEFKQL-IIVVIRNQINENNF---SQFGQISRNLIDKIRE--I 735
Query: 451 LKDNPPSAFQIRYGGYKGVVAADPT-SSKKLSLRDSMRKYESELTKLDVLAWSKYQPCFL 509
+ S ++ + G + ++ + + L + + S ++ ++ ++KY+ FL
Sbjct: 736 FMNQEISVVKVVFNGVQYILQLNNNLKDNIIQLNSQYKIFSSFNDQITIIDYNKYRGAFL 795
Query: 510 NRQLISLLSTLGIWDEIFEKKQREAVRQLDA---ILTDPLKAQEALELMSP-GENTNILK 565
NR LI L +G+ +++F + + Q+ + + L + L +SP E N++K
Sbjct: 796 NRGLIRLFYQMGVKEDVFIQLLNWHLGQISKAFIVRSVSLDLKSELCGLSPIIEQINVMK 855
Query: 566 ELLICGYKPDAEP-FLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQV 624
Y + F+ + + + ++ +L+ K I + + G +D+ LN G+V
Sbjct: 856 R----NYLNEKNCLFIQKVYEKLKLLEIQQLKQKYNILVEKAERLFGVVDQYGILNEGEV 911
>gi|241168347|ref|XP_002410232.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
gi|215494759|gb|EEC04400.1| RNA-dependent RNA polymerase, putative [Ixodes scapularis]
Length = 632
Score = 46.2 bits (108), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 8/55 (14%)
Query: 595 LRTKTRIFIP--NGRSMMGCLDETRTLNYGQVFVQ------ISGAGYRQLHGESS 641
LRT+TRI +P GR+M+G +DET +L YG+VFVQ +G G ++ E S
Sbjct: 2 LRTRTRIAVPPNKGRNMLGVVDETYSLEYGEVFVQYTPLDTTAGQGAQKKEEEGS 56
>gi|336376861|gb|EGO05196.1| hypothetical protein SERLA73DRAFT_68825 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389793|gb|EGO30936.1| hypothetical protein SERLADRAFT_432597 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1094
Score = 46.2 bits (108), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 59/134 (44%), Gaps = 20/134 (14%)
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL-----DETRTLNY 621
LL G+ P P L+ L+ + + + R+ +P M C+ D T TL
Sbjct: 610 LLDAGFTPGDCPILADKLKHIIDTSVDNYVQRYRVDVP-----MSCIAFMVPDPTGTLGP 664
Query: 622 GQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPA 681
G++ ++ S + G + IV G V++ ++PC P DV+ ++AV
Sbjct: 665 GEIHIKSSHPKFLCEDGTET----------DIVLGDVLLTRHPCKLPTDVQKVRAVEKAE 714
Query: 682 LHHMVDCVVFPQKG 695
L H D +V P KG
Sbjct: 715 LRHFKDVIVCPVKG 728
>gi|393904651|gb|EJD73759.1| hypothetical protein LOAG_18838 [Loa loa]
Length = 543
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 255 DGLVYVHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLD--KIHSTDL 312
+G V +V +TP+RV PE+ + NRVLR F +D + LRI F D+D ++++T L
Sbjct: 459 EGYQRVRKVVITPTRVLLVVPELLMGNRVLRTFDKDGNGALRIQFRDDDGTPLRLNTTGL 518
Query: 313 SPRGSSATDITRTRIYTRILSTLRNGILIG 342
I T +TL GI IG
Sbjct: 519 ------------FLIQTTTFNTLSRGIYIG 536
>gi|393224586|gb|EJD32918.1| hypothetical protein AURDEDRAFT_177990 [Auricularia delicata
TFB-10046 SS5]
Length = 655
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVF 625
+LL +KP FL L+ S L + +P S D T TL G+V+
Sbjct: 188 DLLKASFKPQDTAFLHRTLKEVIRSNLQRKVEGYHVDLPCSAS-----DPTGTLEPGEVY 242
Query: 626 VQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHM 685
+ S S+ Q +++G V+ ++PC+ P D++ ++AVN L
Sbjct: 243 FR-----------PSVPLLDSQGYQFDVLEGDCVMGRHPCMLPSDLQKVRAVNRAELGQY 291
Query: 686 VDCVVFPQKGMRYILTML 703
D VV +G R + ++L
Sbjct: 292 RDVVVCATRGRRSLASLL 309
>gi|320170627|gb|EFW47526.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 1247
Score = 43.9 bits (102), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 71/273 (26%), Positives = 113/273 (41%), Gaps = 67/273 (24%)
Query: 451 LKDNP--PSAFQIRYGGYKGVV----------------AADPTSSKKLSLRDSMRKYES- 491
L+DN PSA+QIR+GG+KG++ AA P S + L SM K+++
Sbjct: 413 LEDNSFVPSAYQIRFGGFKGMLVVVTETVQEQLCKGISAAAPMPS--MLLPRSMLKFQTP 470
Query: 492 ---ELTKLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDP-- 545
E +L+VL + P LN +++ +L +G+ + R +++L D
Sbjct: 471 DFPEHRRLEVLGCAFPSSPVTLNNEIVDML--IGVATDSL--VMRGFLKRLVTTFLDDCN 526
Query: 546 --LKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFI 603
L Q+ E +I +L G+ L +F SKL+ L I +
Sbjct: 527 FLLADQQKALAYYLQEKDDIGVRMLAAGHS-----LKFTYLTSFFRSKLIPL----HIPL 577
Query: 604 PNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKN 663
P+ + G D + L G V+V GE+ L V G VV+ K
Sbjct: 578 PSTARLYGVADWSSLLPPGHVYVN---------SGETGL-----------VSGDVVMLKE 617
Query: 664 PCLHPGDVRVLKAVN-----VPALHHMVDCVVF 691
PC D++ KA++ L H+ + VVF
Sbjct: 618 PCFLRTDIQRFKAIDRDHVAFKQLCHLRNVVVF 650
>gi|224146916|ref|XP_002336366.1| rna-dependent RNA polymerase [Populus trichocarpa]
gi|222834816|gb|EEE73265.1| rna-dependent RNA polymerase [Populus trichocarpa]
Length = 320
Score = 43.5 bits (101), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 27/142 (19%)
Query: 560 NTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTL 619
+ NI+ ++ CG P EP+L L + L+ +I +P +MG D T L
Sbjct: 32 DDNIVATMIGCGI-PLEEPYLQCRLSILMKEEKKSLKGG-KIPVPESYYLMGTADPTGLL 89
Query: 620 NYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNV 679
+V + + Q+ GE V++ +NP LH GD+ +LKA V
Sbjct: 90 ESDEVCIILDCG---QISGE------------------VLIYRNPGLHFGDIHILKATYV 128
Query: 680 PALHHMVD----CVVFPQKGMR 697
L V + FP KG R
Sbjct: 129 RELEDFVGNAKYAIFFPCKGPR 150
>gi|402576653|gb|EJW70611.1| hypothetical protein WUBG_18482, partial [Wuchereria bancrofti]
Length = 59
Score = 43.5 bits (101), Expect = 0.46, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 344 RKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREIRNVAKYAARLGQSFSSSK 403
R F +L S+SQ+R++ + + G A +IRE +G F N+ K +R+GQ F+ +K
Sbjct: 1 RHFVYLGSSNSQMRDNGCYFYDDGKGGQAHKIREQLGKFDSC-NIPKMMSRMGQCFTQAK 59
>gi|290980534|ref|XP_002672987.1| predicted protein [Naegleria gruberi]
gi|284086567|gb|EFC40243.1| predicted protein [Naegleria gruberi]
Length = 942
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 111/262 (42%), Gaps = 43/262 (16%)
Query: 457 SAFQIRYGGYKGVVAADPTS-------------SKKLSLRDSMRKYESELT---KLDVLA 500
SA Q+R G KGV+ S + K+ LR+SM K+E + K+D+L
Sbjct: 319 SAMQVRILGAKGVIQKVNKSMWAELLKKHKLPSNTKVILRNSMVKFEGNYSIYNKIDILN 378
Query: 501 WSKYQPCFLNRQLISLLSTLGIWDEIFEKKQREAVR-QLDAILTDPLKAQEALELM--SP 557
++ +NR ++S L + +E EK + QL I+ + + ++
Sbjct: 379 VARVHGGNINRNIMSCLLQMTTNEEEMEKLFKNFYETQLMEIVENKDNPEYLCNVLLSQS 438
Query: 558 GENT--NILKELLICGYKPDAEPFLSMMLQTFRASKLLEL---RTKTRIFIPNGRSMMGC 612
GE + +I ++L++ + D F+S +++ SK + + + P S MG
Sbjct: 439 GETSQESIARDLIMAEHSLD-NYFISSVVKDNIESKFESMVSDKLSMKCKHPGFLSGMGV 497
Query: 613 LDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVR 672
DE+ TL + +V + S R L + V+V +NP + GD++
Sbjct: 498 YDESSTLKHDEVHIPCSKL-IRSLD--------------YAKIDKVLVYRNPLAYEGDIQ 542
Query: 673 VLKAVNVPA---LHHMVDCVVF 691
LK V P L D +VF
Sbjct: 543 CLKLVKHPPTEFLQSRRDVIVF 564
>gi|403414080|emb|CCM00780.1| predicted protein [Fibroporia radiculosa]
Length = 1620
Score = 42.7 bits (99), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 74/168 (44%), Gaps = 27/168 (16%)
Query: 386 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI----GK--TKYVFSDGIGKVSA 439
+ + K+AAR S+S V EI D+ GK + + +DG G +S
Sbjct: 840 QTMVKWAARFALGLSNSVPGARVRPSEIAFEDDIICAAWDGNGKAPNEQIMTDGCGLIST 899
Query: 440 EFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADP-------TSSKKLSLRDSMRKYESE 492
+ + +A + GL + P+A Q+R G KG++ A P SS ++ LR S K +
Sbjct: 900 DILQLIADRLGLS-SVPTAIQMRVCGSKGILLAHPHPQRPSLASSPRVWLRPSQVKIKHS 958
Query: 493 LTK------------LDVLAWSKY-QPCFLNRQLISLLSTLGIWDEIF 527
T +DVL S+ P L+ + I L+ G+ ++F
Sbjct: 959 TTNQLPANLDPALCTIDVLRPSRLTSPVRLSTETIINLAENGVPTDVF 1006
>gi|392597983|gb|EIW87305.1| hypothetical protein CONPUDRAFT_87147 [Coniophora puteana
RWD-64-598 SS2]
Length = 1075
Score = 42.7 bits (99), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 640 SSLFSSSRSRQRF-IVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVVFPQKGMRY 698
S F + RF I++G V+V +NP P DV+ ++AV P L D ++FP G R
Sbjct: 679 SDGFKDPETGARFDILKGDVLVLRNPTRLPSDVQKVRAVTYPELEKYYDVIIFPTCGARS 738
Query: 699 ILTML 703
+ + L
Sbjct: 739 LASYL 743
>gi|452985629|gb|EME85385.1| hypothetical protein MYCFIDRAFT_83458, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 1527
Score = 42.7 bits (99), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 64/149 (42%), Gaps = 27/149 (18%)
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL--DETRTLNYGQ 623
++L G P E FL+ ++T + L + +I + +++G D L G+
Sbjct: 1009 QMLESGLVPSQEAFLASEVRTMVKTVLDTKKKNFKIPLSRSTTLLGVALADPLNCLAPGE 1068
Query: 624 VFV--------QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLK 675
+ V +I+G + LH L +A+NP + P D++ +K
Sbjct: 1069 IHVNFARTFCDKITGMPWSILHEMECL-----------------IARNPAMAPWDMQKVK 1111
Query: 676 AVNVPALHHMVDCVVFPQKGMRYILTMLK 704
AV P L H+ + V+ KG R + +L+
Sbjct: 1112 AVFKPELAHLPNVVILSAKGKRPLAELLQ 1140
>gi|361129951|gb|EHL01827.1| putative Hybrid signal transduction histidine kinase K [Glarea
lozoyensis 74030]
Length = 474
Score = 42.4 bits (98), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 22/135 (16%)
Query: 482 LRDSMRKYESELTKLDV--------------LAWSKYQPCFLNRQLISLLSTLGIWDEIF 527
+RD+++ +E EL K D+ + W K P +N+ I+L+S +
Sbjct: 74 VRDALKMFEGELHKADLTLRFIVEESYTRLSVDWVKLDPSRVNQVFINLISNAIKFTSTE 133
Query: 528 EKKQREAVRQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTF 587
EK+Q V ++ A T+P K + LE + NT+ E+L CG PD +LS+ +Q
Sbjct: 134 EKRQ--IVVKVGA-STEPPKPKNDLEFLPKSHNTS--NEILSCGT-PDQTIYLSISVQD- 186
Query: 588 RASKLLELRTKTRIF 602
+ + L+ K ++F
Sbjct: 187 -SGRGLDENEKNQLF 200
>gi|409047033|gb|EKM56512.1| hypothetical protein PHACADRAFT_118286 [Phanerochaete carnosa
HHB-10118-sp]
Length = 965
Score = 42.4 bits (98), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 14/133 (10%)
Query: 367 RYGLTAAEIREWMG--NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIG 424
RY L ++ EW + + +N++KYAAR + S+S L I +I D++
Sbjct: 210 RYSLE--KLIEWYNPLDLNDKQNLSKYAARSDLALSTSSPVLEFDPRNIYMINDIEAPHT 267
Query: 425 KTKY----VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGV--VAAD---PT 475
K +F+DG G ++ +V G +PP+A Q R G KGV + D PT
Sbjct: 268 GGKVPPEKIFTDGCGFMNGAALMRVGKWIG-SGSPPTAVQGRILGSKGVWLLHPDDRAPT 326
Query: 476 SSKKLSLRDSMRK 488
+ ++ +R S RK
Sbjct: 327 AEPRIWIRPSQRK 339
>gi|347839298|emb|CCD53870.1| RNA Polymerase RNA dependante [Botryotinia fuckeliana]
Length = 1007
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 44/89 (49%), Gaps = 4/89 (4%)
Query: 390 KYAARLGQSFSSSKETLSVHMDEIEIIPDVK---IEIGKTKYVFSDGIGKVSAEFARKVA 446
K AR S ++ T++V +I D++ + YV +DG G++S ARK+
Sbjct: 622 KLFARTALVVSRNRATVTVEETQIRRKEDIRNPDVNDPSKTYVMTDGAGRMSLALARKIV 681
Query: 447 SKCGLKDNPPSAFQIRYGGYKGVVAADPT 475
K L PSAFQ R+G KG+ D T
Sbjct: 682 LKLELA-YIPSAFQGRFGQAKGLWIVDRT 709
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 12/140 (8%)
Query: 557 PGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDET 616
P +N + L LL G+ P ++ +++ K EL+ + I + + D
Sbjct: 832 PTKNEDKLNLLLDAGFDPRRLQYVMDLVKKSFDMKCAELKERLNITVAKSTKVYMVPDFW 891
Query: 617 RTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGL-VVVAKNPCLHPGDVRVLK 675
L +V + S S + ++ + V+VA+NP +P D++ +
Sbjct: 892 GVLEPNEVHLDFS-----------SFVDNETGLSDIQLEDMDVLVARNPAHYPSDIQRVT 940
Query: 676 AVNVPALHHMVDCVVFPQKG 695
AVN L H+ D +VF KG
Sbjct: 941 AVNKHELRHLKDVIVFSTKG 960
>gi|395331410|gb|EJF63791.1| hypothetical protein DICSQDRAFT_55194 [Dichomitus squalens LYAD-421
SS1]
Length = 1069
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 58/155 (37%), Gaps = 17/155 (10%)
Query: 536 RQLDAILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLEL 595
+Q A DP+ SP L+ G++PD L L+ +
Sbjct: 545 QQSSAWWEDPISG-------SPSSLEETCMTLIDSGFRPDDCAVLGAKLREVAKKVVKTF 597
Query: 596 RTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ 655
+TK R +P S D L +V V+ S G R +V
Sbjct: 598 QTKYRFAVPMSCSAFIVPDPYGVLKANEVHVRSSRRNLPDHQG----------RLTDLVL 647
Query: 656 GLVVVAKNPCLHPGDVRVLKAVNVPALHHMVDCVV 690
G V+V ++PC P DV+ +KAV L H D +V
Sbjct: 648 GDVLVTRHPCKVPSDVQKVKAVFHERLRHYCDVIV 682
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 68/153 (44%), Gaps = 9/153 (5%)
Query: 386 RNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEI--GKTK----YVFSDGIGKVSA 439
+ +AK+AAR S+S L + D ++ + D+ + GK K +DG G +
Sbjct: 303 QTMAKWAARFALPLSNSMPGLRLKHDNVKFVDDIICDAFEGKGKPPSEMQMTDGCGFANR 362
Query: 440 EFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTK--LD 497
R + K + P+A Q R GG KG++ L L + +++ K LD
Sbjct: 363 AVMRMLHDKFPAWQDEPTAIQCRIGGAKGLLLVRHDLYSSLPLEQCILPSDTDPAKLTLD 422
Query: 498 VLAWSKYQ-PCFLNRQLISLLSTLGIWDEIFEK 529
VL S+ + P L+ + I+ + + E F K
Sbjct: 423 VLRASRMKCPARLSTETITNFAENDVPYECFSK 455
>gi|325093828|gb|EGC47138.1| RNA-dependent RNA polymerase [Ajellomyces capsulatus H88]
Length = 1387
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 122/325 (37%), Gaps = 70/325 (21%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK---------- 478
V +DG +S VAS GL D P+ FQ R G KGV D S+
Sbjct: 694 VMNDGCALMSKSLGMAVASALGL-DGHPAIFQARISGAKGVWMVDLDDSRFKTGDRGFWL 752
Query: 479 -----KLSL-----RDSMRKYESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGI----- 522
+L + D+ +++LT +V+ WS+ P LN QL+++L GI
Sbjct: 753 QITQSQLKIYPAPPHDTKPMDDTQLT-FEVVQWSRPLSPASLNMQLLNILQHGGIRNDHI 811
Query: 523 -----------WDEIFEK-------KQREAVRQLDAILTDPLKAQ-EALELMSPGENTNI 563
+DE + R ++++ I + K Q + + P +
Sbjct: 812 RNLIRQEMSSFYDEFLRTLLCSSGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQ 871
Query: 564 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 623
LL G+ P P+L+ + + L L+ K +I + D L +
Sbjct: 872 AIMLLDAGFLPLKLPYLTKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDE 930
Query: 624 VFVQIS-----GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
V + S G+ +LH V++A+ P D++ ++V
Sbjct: 931 VHLGFSREWEHGSASTELHDID-----------------VLLARLPAHLATDIQKRRSVY 973
Query: 679 VPALHHMVDCVVFPQKGMRYILTML 703
L HM D +VFP G + ++L
Sbjct: 974 KNELRHMKDVIVFPTTGDTPLASLL 998
>gi|240277746|gb|EER41254.1| RNA-directed RNA polymerase [Ajellomyces capsulatus H143]
Length = 1317
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 122/325 (37%), Gaps = 70/325 (21%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK---------- 478
V +DG +S VAS GL D P+ FQ R G KGV D S+
Sbjct: 624 VMNDGCALMSKSLGMAVASALGL-DGHPAIFQARISGAKGVWMVDLDDSRFKTGDRGFWL 682
Query: 479 -----KLSL-----RDSMRKYESELTKLDVLAWSK-YQPCFLNRQLISLLSTLGI----- 522
+L + D+ +++LT +V+ WS+ P LN QL+++L GI
Sbjct: 683 QITQSQLKIYPAPPHDTKPMDDTQLT-FEVVQWSRPLSPASLNMQLLNILQHGGIRNDHI 741
Query: 523 -----------WDEIFEK-------KQREAVRQLDAILTDPLKAQ-EALELMSPGENTNI 563
+DE + R ++++ I + K Q + + P +
Sbjct: 742 RNLIRQEMSSFYDEFLRTLLCSSGVECRSWLQKMKWITNESSKRQSKRTDNFFPPQYAEQ 801
Query: 564 LKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQ 623
LL G+ P P+L+ + + L L+ K +I + D L +
Sbjct: 802 AIMLLDAGFLPLKLPYLTKIFRRLLQDYLDNLK-KLKITVSQSTFAYCVADPFGVLRPDE 860
Query: 624 VFVQIS-----GAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVN 678
V + S G+ +LH V++A+ P D++ ++V
Sbjct: 861 VHLGFSREWEHGSASTELHDID-----------------VLLARLPAHLATDIQKRRSVY 903
Query: 679 VPALHHMVDCVVFPQKGMRYILTML 703
L HM D +VFP G + ++L
Sbjct: 904 KNELRHMKDVIVFPTTGDTPLASLL 928
>gi|409083947|gb|EKM84304.1| hypothetical protein AGABI1DRAFT_32196 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 999
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 65/149 (43%), Gaps = 14/149 (9%)
Query: 566 ELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCL--DETRTLNYGQ 623
ELL G+ P L L +F + +E K + IP S+ G + D L+ G+
Sbjct: 551 ELLQAGFHPRHSAVLKDKL-SFIIEQEIEHCVK-KYAIPLAESLSGFVAPDPLGILDEGE 608
Query: 624 VFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALH 683
++ + S SL IV G V++ + P D++ +KAVN P L+
Sbjct: 609 IYFRSS----------ESLLDPRTQLTYDIVTGDVILGRYPVRLASDLQKVKAVNKPELY 658
Query: 684 HMVDCVVFPQKGMRYILTMLKPRLLWYEL 712
D ++ KG R + ++L ++Y L
Sbjct: 659 RWPDVIIVSTKGTRSLASLLSGGGMFYTL 687
>gi|395335049|gb|EJF67425.1| hypothetical protein DICSQDRAFT_177042 [Dichomitus squalens
LYAD-421 SS1]
Length = 1306
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 77/169 (45%), Gaps = 20/169 (11%)
Query: 388 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKY------VFSDGIGKVSAEF 441
++K+A R FS S +S+ ++ + + D + + + +DG G ++
Sbjct: 518 ISKWATRFDLGFSVSVPVISIALENMHFMKDEAVLNDDQDWKPPPECILTDGCGWMNGAA 577
Query: 442 ARKVASKCGLKDNPPSAFQIRYGGYKGVVAADPTSSK-----KLSLRDSMRKYESELTKL 496
+A + GL++ P +A Q R+GG KG+ P K+ +RDS K + +L L
Sbjct: 578 LSALAKQIGLEERP-TAVQGRFGGAKGLWILHPREQSSNGVPKIWIRDSQVKVKLDLNNL 636
Query: 497 -------DVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIFEKKQREAVRQ 537
D+LA + P L++ + L+ G+ E F + ++ + +
Sbjct: 637 HPAHTVFDLLAPPRVTLPSRLSKLTVLNLAYNGVPKETFVELMKDTIEE 685
>gi|300709176|ref|XP_002996755.1| hypothetical protein NCER_100131 [Nosema ceranae BRL01]
gi|239606078|gb|EEQ83084.1| hypothetical protein NCER_100131 [Nosema ceranae BRL01]
Length = 849
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 40/85 (47%), Gaps = 10/85 (11%)
Query: 260 VHRVQVTPSRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSA 319
V VTP R+ + P + SNR+LR F D + FLRISF +E DL +
Sbjct: 769 VKHAVVTPLRIVYKLPVVFESNRILREF--DYEKFLRISFREE--------DLKTKIKDT 818
Query: 320 TDITRTRIYTRILSTLRNGILIGDR 344
+ + IY + L GI +G +
Sbjct: 819 VNKDQNFIYDYFRNILNEGIFVGKK 843
>gi|242208189|ref|XP_002469946.1| predicted protein [Postia placenta Mad-698-R]
gi|220731008|gb|EED84857.1| predicted protein [Postia placenta Mad-698-R]
Length = 1427
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 10/128 (7%)
Query: 567 LLICGYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFV 626
LL G+KPD P L+ L+ + + R+ +P + D L GQV +
Sbjct: 641 LLDSGFKPDTCPVLAAKLKEVVKRAINSYVRRYRVDVPQSCTAYIVPDPLGVLEPGQVHI 700
Query: 627 QISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAKNPCLHPGDVRVLKAVNVPALHHMV 686
+ S G R IV G V+V ++PC P DV+ + AV L V
Sbjct: 701 KSSRRNLVDQDG----------RPTDIVLGEVLVTRHPCKVPTDVQKVTAVFNQKLSSYV 750
Query: 687 DCVVFPQK 694
D +V K
Sbjct: 751 DVIVVSIK 758
>gi|449541903|gb|EMD32884.1| hypothetical protein CERSUDRAFT_142953, partial [Ceriporiopsis
subvermispora B]
Length = 125
Score = 41.2 bits (95), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 10/119 (8%)
Query: 331 ILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIRE---WMGNFREIRN 387
++ + G+++ ++ F S+SQLR ++ R T E+ E +G+F I
Sbjct: 1 MIRLFQAGLMLNGVQYRFYGHSNSQLRSRGCFL---REANTDDELDEKIYSLGDFHRIMT 57
Query: 388 VAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVA 446
AK A R+G FS ++ + + I D+ + G+ FSDG G +S FA +V+
Sbjct: 58 AAKRAKRIGLLFSQAELDWVLDPRHTKDIDDIVVN-GEN---FSDGCGLMSKRFATQVS 112
>gi|401882100|gb|EJT46373.1| RNA-directed RNA polymerase [Trichosporon asahii var. asahii CBS
2479]
Length = 1106
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 71/329 (21%), Positives = 123/329 (37%), Gaps = 90/329 (27%)
Query: 429 VFSDGIGKVSAEFARKVASKCGLKDN--PPSAFQIRYGGYKGVVA-----ADPTSSKKLS 481
+ SDG G +S +K+ D PP + Q+R GG KGV++ + +
Sbjct: 447 ILSDGCGLMS----QKILHHPFFADLRWPPCSVQMRLGGSKGVLSLMSREQEEEYEADVI 502
Query: 482 LRDSMRKYES--------ELTKLDVLAWSKYQ-PCFLNRQLISLLSTLGIWDEIFEKKQR 532
LR SM K +S + LDVL + C L+ + I ++ G+ ++ K
Sbjct: 503 LRPSMIKSKSAAGFSDDPSVLTLDVLKVDGLKVGCNLSSEAIIIMEDRGVPPDVLIAKAE 562
Query: 533 EAVRQLDAILTDPLKAQEALELMSPGENTNILKELLI-----------------C----- 570
++ L L + PGEN + +++ L+ C
Sbjct: 563 LEFEKIRENL---------LPVPHPGENEDDVRQRLLHAVYTLGGVGSEREKRRCRQLGK 613
Query: 571 --------------------------GYKPDAEPFLSMMLQTFRASKLLELRTKTRIFIP 604
G+ PD ++S L+ S L R + +P
Sbjct: 614 STKVAGLSLESTQQDEHEEDTSVAENGFLPDESVWMSQKLKFMVRS--LTDRAVSDFKLP 671
Query: 605 NGRSMMGCL--DETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVVAK 662
+S+ + D L ++++ S A +L + R V+G V++ +
Sbjct: 672 VDQSLSALIVPDTLGVLKPNEIYIAPSSA---------TLVNPRTMRPMSCVEGDVLIFR 722
Query: 663 NPCLHPGDVRVLKAVNVPALHHMVDCVVF 691
+PC P DVR ++AV L H+ DC+V
Sbjct: 723 SPCKLPTDVRKMRAVYHSKLKHLQDCIVM 751
>gi|376254929|ref|YP_005143388.1| phosphoserine phosphatase [Corynebacterium diphtheriae PW8]
gi|372118013|gb|AEX70483.1| Phosphoserine phosphatase [Corynebacterium diphtheriae PW8]
Length = 427
Score = 40.4 bits (93), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 69/267 (25%)
Query: 365 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 409
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 410 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 456
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 457 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAW-------SKYQPCF- 508
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 509 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQ---LDAILTDPL 546
+ ++I +L+ G +E+ FE+ RE V+ LDA + D +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 547 KAQEALELMSPGENTNILKELLICGYK 573
L +PG T I + L GYK
Sbjct: 267 ARDIVL---TPGARTTI-RTLQRLGYK 289
>gi|376293874|ref|YP_005165548.1| phosphoserine phosphatase [Corynebacterium diphtheriae HC02]
gi|372111197|gb|AEX77257.1| Phosphoserine phosphatase [Corynebacterium diphtheriae HC02]
Length = 427
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 69/267 (25%)
Query: 365 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 409
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 410 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 456
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 457 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAW-------SKYQPCF- 508
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 509 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQ---LDAILTDPL 546
+ ++I +L+ G +E+ FE+ RE V+ LDA + D +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 547 KAQEALELMSPGENTNILKELLICGYK 573
L +PG T I + L GYK
Sbjct: 267 ARDIVL---TPGARTTI-RTLKRLGYK 289
>gi|375291488|ref|YP_005126028.1| Phosphoserine phosphatase [Corynebacterium diphtheriae 241]
gi|376246325|ref|YP_005136564.1| phosphoserine phosphatase [Corynebacterium diphtheriae HC01]
gi|371581159|gb|AEX44826.1| Phosphoserine phosphatase [Corynebacterium diphtheriae 241]
gi|372108955|gb|AEX75016.1| Phosphoserine phosphatase [Corynebacterium diphtheriae HC01]
Length = 427
Score = 40.0 bits (92), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 69/267 (25%)
Query: 365 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 409
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 410 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 456
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 457 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAW-------SKYQPCF- 508
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 509 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQ---LDAILTDPL 546
+ ++I +L+ G +E+ FE+ RE V+ LDA + D +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 547 KAQEALELMSPGENTNILKELLICGYK 573
L +PG T I + L GYK
Sbjct: 267 ARDIVL---TPGARTTI-RTLKRLGYK 289
>gi|168049572|ref|XP_001777236.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
gi|162671338|gb|EDQ57891.1| RNA-directed RNA polymerase [Physcomitrella patens subsp. patens]
Length = 1040
Score = 40.0 bits (92), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 74/317 (23%), Positives = 125/317 (39%), Gaps = 47/317 (14%)
Query: 387 NVAKYAARLGQSFSSSKETLSVHMDEIEI--IPDV--KIEIGKTKYV-FSDGIGKVSAEF 441
+ ++A+RL + S S T +++ DEIE+ IPD+ K K++ ++G ++S +
Sbjct: 404 TMPRFASRLQLALSKSV-TANLNWDEIEVKQIPDILSKTLDNSGKFMAHTEGTSEISPDV 462
Query: 442 ARKV-ASKCGLKDNPPSAFQIRYGG---YKGVV------AADPTSSKKLSLRDSMRKYES 491
AR + S C + P + G +KG+ ++ R SM K S
Sbjct: 463 ARLLPCSVCKGRVGEPKGYPTLVQGCLFWKGMAIKGTWQVNHQLKGLQILYRPSMVKVTS 522
Query: 492 ELTKLDVLAWSKYQ-----PCF------LNRQLISLLSTLGIWDEIFEKKQREAVRQLDA 540
+ D+ ++ C+ L++ LI LLS + F + +A+ +L
Sbjct: 523 DPILKDIPTIKSFEVVNTNTCYKLEEARLSQDLIILLSINNVPASFFLELVEKALEKLRT 582
Query: 541 ILTDPLKAQEALELMSPGENTNILKELLICGYKPDAEPFLSMMLQTFRASKLLELRTKTR 600
T+ + L+ SP +I P + P + L+ K+ LR K
Sbjct: 583 FFTERGQVFRELKSCSPDYAVGDQTLRMIMANIPMSNPQMQNNLKKITQDKIALLR-KGC 641
Query: 601 IFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQGLVVV 660
+ +P +MG D T+ V I G + V G V+V
Sbjct: 642 LPLPQSYYLMGTSDPTKEKVLKPNEVAIVKNGEK-------------------VIGKVLV 682
Query: 661 AKNPCLHPGDVRVLKAV 677
KNP H GDV + AV
Sbjct: 683 YKNPGKHWGDVHIFDAV 699
>gi|376249115|ref|YP_005141059.1| phosphoserine phosphatase [Corynebacterium diphtheriae HC04]
gi|376257726|ref|YP_005145617.1| phosphoserine phosphatase [Corynebacterium diphtheriae VA01]
gi|376285345|ref|YP_005158555.1| phosphoserine phosphatase [Corynebacterium diphtheriae 31A]
gi|371578860|gb|AEX42528.1| Phosphoserine phosphatase [Corynebacterium diphtheriae 31A]
gi|372115683|gb|AEX81741.1| Phosphoserine phosphatase [Corynebacterium diphtheriae HC04]
gi|372120243|gb|AEX83977.1| Phosphoserine phosphatase [Corynebacterium diphtheriae VA01]
Length = 427
Score = 40.0 bits (92), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 69/267 (25%)
Query: 365 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 409
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 410 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 456
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 457 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAW-------SKYQPCF- 508
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 509 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQ---LDAILTDPL 546
+ ++I +L+ G +E+ FE+ RE V+ LDA + D +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 547 KAQEALELMSPGENTNILKELLICGYK 573
L +PG T I + L GYK
Sbjct: 267 ARDIVL---TPGARTTI-RTLKRLGYK 289
>gi|376288350|ref|YP_005160916.1| phosphoserine phosphatase [Corynebacterium diphtheriae BH8]
gi|371585684|gb|AEX49349.1| Phosphoserine phosphatase [Corynebacterium diphtheriae BH8]
Length = 427
Score = 40.0 bits (92), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 69/267 (25%)
Query: 365 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 409
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 410 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 456
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 457 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAW-------SKYQPCF- 508
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 509 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQ---LDAILTDPL 546
+ ++I +L+ G +E+ FE+ RE V+ LDA + D +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 547 KAQEALELMSPGENTNILKELLICGYK 573
L +PG T I + L GYK
Sbjct: 267 ARDIVL---TPGARTTI-RTLKRLGYK 289
>gi|38234433|ref|NP_940200.1| hydrolase [Corynebacterium diphtheriae NCTC 13129]
gi|419861411|ref|ZP_14384045.1| phosphoserine phosphatase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38200696|emb|CAE50392.1| Putative hydrolase [Corynebacterium diphtheriae]
gi|387982077|gb|EIK55593.1| phosphoserine phosphatase [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 410
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 69/267 (25%)
Query: 365 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 409
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 17 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 76
Query: 410 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 456
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 77 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 136
Query: 457 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAW-------SKYQPCF- 508
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 137 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 189
Query: 509 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQ---LDAILTDPL 546
+ ++I +L+ G +E+ FE+ RE V+ LDA + D +
Sbjct: 190 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 249
Query: 547 KAQEALELMSPGENTNILKELLICGYK 573
L +PG T I + L GYK
Sbjct: 250 ARDIVL---TPGARTTI-RTLKRLGYK 272
>gi|376243417|ref|YP_005134269.1| phosphoserine phosphatase [Corynebacterium diphtheriae CDCE 8392]
gi|376251913|ref|YP_005138794.1| phosphoserine phosphatase [Corynebacterium diphtheriae HC03]
gi|376291021|ref|YP_005163268.1| phosphoserine phosphatase [Corynebacterium diphtheriae C7 (beta)]
gi|372104417|gb|AEX68014.1| Phosphoserine phosphatase [Corynebacterium diphtheriae C7 (beta)]
gi|372106659|gb|AEX72721.1| Phosphoserine phosphatase [Corynebacterium diphtheriae CDCE 8392]
gi|372113417|gb|AEX79476.1| Phosphoserine phosphatase [Corynebacterium diphtheriae HC03]
Length = 427
Score = 40.0 bits (92), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 66/267 (24%), Positives = 104/267 (38%), Gaps = 69/267 (25%)
Query: 365 ASRYGLTAAEIREWMGN-----------FREIRNVAKYAARLGQSFSSS----KETLSVH 409
A R+G+TAA R N FR ++A YA S ++TLSVH
Sbjct: 34 ADRHGVTAATFRVLSANNVQILDVEQSKFRGFLSIAVYAGIKASMIDSVEQGLRDTLSVH 93
Query: 410 MDEIEIIPDVKIEIGK---TKYVFSDG----------IGKVSAEFARKVASKCGLKDNPP 456
+ + + + E+ + T V G IG+ A+F + G+ D P
Sbjct: 94 GQSVSLSVESRTEVSRPRSTHVVVILGNPVGAEDIWKIGQTMADFGANIDGIRGISDYPV 153
Query: 457 SAFQIRYGGYKGVVAADPTSSKKLSLRDSMRKYESELTKLDVLAW-------SKYQPCF- 508
+ ++R V ADP LR ++ +EL +D++ SK CF
Sbjct: 154 TGLELR------VTVADPAPGAAEPLRKALAALTTEL-GVDIVIERAGLQRRSKRLVCFD 206
Query: 509 -----LNRQLISLLST-LGIWDEI-------------FEKKQREAVRQ---LDAILTDPL 546
+ ++I +L+ G +E+ FE+ RE V+ LDA + D +
Sbjct: 207 CDSTLITGEVIEMLAAHAGREEEVAAVTERAMRGELDFEESLRERVKALAGLDASVIDEV 266
Query: 547 KAQEALELMSPGENTNILKELLICGYK 573
L +PG T I + L GYK
Sbjct: 267 ARDIVL---TPGARTTI-RTLKRLGYK 289
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,367,587,549
Number of Sequences: 23463169
Number of extensions: 480311647
Number of successful extensions: 1057690
Number of sequences better than 100.0: 710
Number of HSP's better than 100.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 169
Number of HSP's that attempted gapping in prelim test: 1053759
Number of HSP's gapped (non-prelim): 993
length of query: 724
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 574
effective length of database: 8,839,720,017
effective search space: 5073999289758
effective search space used: 5073999289758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)