Query 004909
Match_columns 724
No_of_seqs 245 out of 447
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 09:28:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j7n_A RNA-dependent RNA polym 100.0 1.5E-99 5E-104 899.7 32.0 432 268-723 131-647 (1022)
2 1b64_A Elongation factor 1-bet 40.5 28 0.00096 30.2 4.3 59 323-384 20-78 (91)
3 1f60_B Elongation factor EEF1B 37.7 31 0.0011 30.1 4.2 59 323-384 23-81 (94)
4 1gh8_A Translation elongation 35.6 28 0.00097 30.1 3.6 60 323-385 18-77 (89)
5 2yy3_A Elongation factor 1-bet 32.0 37 0.0013 29.5 3.7 59 323-384 20-79 (91)
6 2cos_A Serine/threonine protei 28.6 53 0.0018 25.9 3.6 44 508-557 7-50 (54)
7 3rkl_A STIV-A81; 4-helix bundl 9.8 1.6E+02 0.0055 24.0 2.4 31 171-201 33-63 (87)
8 1whc_A RSGI RUH-027, UBA/UBX 3 9.0 4.2E+02 0.014 21.0 4.7 43 505-554 4-47 (64)
9 3v4g_A Arginine repressor; vib 8.9 8.1E+02 0.028 23.6 7.5 59 549-617 39-98 (180)
10 1gzs_B SOPE; toxin/cell cycle, 8.0 3.4E+02 0.012 25.2 4.1 81 524-607 5-92 (165)
No 1
>2j7n_A RNA-dependent RNA polymerase; RNAI response, RNA-directed RNA polymerase, hydrolase; 2.30A {Neurospora crassa} PDB: 2j7o_A
Probab=100.00 E-value=1.5e-99 Score=899.72 Aligned_cols=432 Identities=20% Similarity=0.258 Sum_probs=357.9
Q ss_pred CeeeeccccccccCceecccCCCCCcEEEEEEecCCCcccccCCCCCCCCCCccchhhhHHHHHHHHHhcC-eEEcceeE
Q 004909 268 SRVYFCGPEINVSNRVLRHFRRDIDNFLRISFIDEDLDKIHSTDLSPRGSSATDITRTRIYTRILSTLRNG-ILIGDRKF 346 (724)
Q Consensus 268 tri~l~~P~~e~sNRvlR~y~~~~d~FLRV~F~DE~~~~l~~~~~~pr~~~~~~~~~~~i~~Rv~~~L~~G-i~I~gR~y 346 (724)
.++.|.+|+++.|||+.|+|++ ||||||+|++++..... ++++.. . ....+++|..+|.+| +.++||+|
T Consensus 131 ~~l~L~p~~l~~s~R~~RrfGs--DrFL~V~fp~~~~~~~~---~~~~~~-~----~~~~~~~v~~~l~~~~~~~~gr~~ 200 (1022)
T 2j7n_A 131 YLVKLKPLMFEQGCRLTRRFGP--DRFFEILIPSPTSTSPS---VPPVVS-K----QPAAVEEVIQWLTMGQHSLVGRQW 200 (1022)
T ss_dssp EEEEECCCEEEECBHHHHHHCG--GGEEEEEEECTTCCCSS---SCTTSS-S----SSSCHHHHHHHHHSSCEEETTEEE
T ss_pred eEEEecCCccCCCceEEEeeCC--ceeEEEEecCCcccccc---ccchhc-c----chHHHHHHHHHHhcCcEEEeccee
Confidence 4788999999999999999996 89999999998644221 111111 0 122467888888877 67888888
Q ss_pred EEEeec---------CCCCC--------cceEEEEEeC------------------------CCCCHHHHHHHhcCCCcc
Q 004909 347 EFLAFS---------SSQLR--------ESSAWMFASR------------------------YGLTAAEIREWMGNFREI 385 (724)
Q Consensus 347 ~FLafS---------~SqLR--------~~s~wFfa~~------------------------~~lt~~~Ir~wmGdF~~i 385 (724)
+.+-.- ..|+| ...||||+.+ .++|+++||+|||+|+++
T Consensus 201 r~f~~~d~~~r~~~~~~~l~~~~~~~~~~~Rv~~f~~~G~~i~~~~f~fl~~s~lre~s~~~~~ls~~~ir~wmg~f~~n 280 (1022)
T 2j7n_A 201 RAFFAKDAGYRKPLREFQLRAEDPKPIIKERVHFFAETGITFRPDVFKTRSVVPAEEPVEQRTEFKVSQMLDWLLQLDNN 280 (1022)
T ss_dssp EEEEEEECC--------------CCCCCEEEEEEEEEEETTCBCCCC-------------CCBCCCHHHHHHHHHCGGGC
T ss_pred EEEeeccccccccccccccccccccccccceEEEEeccCccccCccccccccccccccccccCCCCHHHHHHhccChhhc
Confidence 843221 12332 1457777732 248999999999999987
Q ss_pred c--CHHHHHHHhccccCCCccceeeecCcEEEe-CCeeccccCcceeeccccccccHHHHHHHHHHcCCCCCCCeEEEEe
Q 004909 386 R--NVAKYAARLGQSFSSSKETLSVHMDEIEII-PDVKIEIGKTKYVFSDGIGKVSAEFARKVASKCGLKDNPPSAFQIR 462 (724)
Q Consensus 386 ~--~vaK~aARlgq~FSsT~~tv~v~~~~i~~i-~DI~~~~~g~~~~FTDG~G~IS~~lA~~I~~~l~l~~~~PSAfQiR 462 (724)
+ ++||||||||||||+|.+|+.+.+++|.++ |||+. .+|++|+||||||+||++||++||+++++ ..+|||||||
T Consensus 281 ~~q~~aK~aARigq~FS~T~~tv~v~~~~I~~~~dDI~~-~~g~g~vFTDGvG~IS~~lA~~I~~~l~l-~~~PSAfQiR 358 (1022)
T 2j7n_A 281 TWQPHLKLFSRIQLGLSKTYAIMTLEPHQIRHHKTDLLS-PSGTGEVMNDGVGRMSRSVAKRIRDVLGL-GDVPSAVQGR 358 (1022)
T ss_dssp TTSBHHHHHHTTHHHHSBCEEEEECCGGGEEECSSCCBC-TTSSCCBSSTTEEEECHHHHHHHHHHHTC-SSCCSEEEEE
T ss_pred ccchHHHHHHHhhhhhcCccCcEEechHHEEEcCCcccc-CCCCCCeecCCchHhhHHHHHHHHHHcCC-CCCCcEEEEE
Confidence 4 599999999999999999999999999985 78872 34678999999999999999999999999 6899999999
Q ss_pred ecCceEEEEeCCCC---CcceeeccccccccC-----CCCcEEEEeec-CcccccccHHHHHHHhcCCCChHHHHHHHHH
Q 004909 463 YGGYKGVVAADPTS---SKKLSLRDSMRKYES-----ELTKLDVLAWS-KYQPCFLNRQLISLLSTLGIWDEIFEKKQRE 533 (724)
Q Consensus 463 ~gG~KGvl~vdp~~---~~~I~lR~Sm~KF~s-----~~~~LeI~~~S-~~~p~~LNRQ~I~iLs~lGV~devF~~lq~~ 533 (724)
||||||||+|||++ +.+|+|||||+||++ .+++||||++| ++.|++||||+|+||+++||++++|++++++
T Consensus 359 ~gGaKGvl~vdp~~~~~~~~I~lRpSm~KF~~~~~d~~~~~LEIv~~s~~~~~~~LNRQlI~lL~~lGV~~~~f~~~i~~ 438 (1022)
T 2j7n_A 359 FGSAKGMWVIDVDDTGDEDWIETYPSQRKWECDFVDKHQRTLEVRSVASELKSAGLNLQLLPVLEDRARDKVKMRQAIGD 438 (1022)
T ss_dssp ETTEEEEEEECTTCCSCCCCEEECTTTBCSCCCCCSGGGSEEEEEEECCCCCCCCBCTTTHHHHHHTBSSHHHHHHHHHH
T ss_pred eccceEEEEECcccCCCcceEEeCCcceeecCCCCCcccCeEEEEeecCCCCCceecHHHHHHHHhCCcCHHHHHHHHHH
Confidence 99999999999986 346999999999986 36799999997 5899999999999999999999999887554
Q ss_pred HH-H-------HHHHHhcCHHHHHHHHHhcC------------------CCCcHHHHHHHHHCCCCCCCchHHHHHHHHH
Q 004909 534 AV-R-------QLDAILTDPLKAQEALELMS------------------PGENTNILKELLICGYKPDAEPFLSMMLQTF 587 (724)
Q Consensus 534 ~l-~-------~l~~~l~d~~~a~~~l~~~~------------------~~~~~~~l~~ml~~Gf~p~~epfl~~~L~~~ 587 (724)
++ + ....+++++..++.++.... +...++++..|+.+||+|.++|||+++++.+
T Consensus 439 ~~~~~L~~~l~~~~~al~~~~~~r~~l~~~~~~~~~r~~~g~~~~~~glp~s~~~~l~~Ll~aGf~p~~epfL~~~l~~~ 518 (1022)
T 2j7n_A 439 RLINDLQRQFSEQKHALNRPVEFRQWVYESYSSRATRVSHGRVPFLAGLPDSQEETLNFLMNSGFDPKKQKYLQDIAWDL 518 (1022)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSCCHHHHHHHTSCCEETTEESSHHHHHHHHHHTTCCTTTBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCHHHHHHHHHhhccccccccccccchhhccCccchHHHHHHHHHcCCCccccHHHHHHHHHH
Confidence 42 2 23455778777777664321 1223467899999999999999999999999
Q ss_pred HHHHHHhhccccceeecCceeeeeeeCCCCCCCCCcEEEEEeCCccccccCCCccccccccccceeEe-eEEEEEeCCCC
Q 004909 588 RASKLLELRTKTRIFIPNGRSMMGCLDETRTLNYGQVFVQISGAGYRQLHGESSLFSSSRSRQRFIVQ-GLVVVAKNPCL 666 (724)
Q Consensus 588 ~~~~L~~Lk~K~RI~Vp~s~~L~GV~DetG~L~~gEVfvq~s~~~~~~~~~~~~~~~~~~~~~~~vi~-G~VlV~RnP~l 666 (724)
+..+|+.||+|+||+||+|++||||+||||+|+||||||+++..... . .....++. |+|+|+|||||
T Consensus 519 ~~~~l~~LK~k~rI~V~~s~~L~GV~DetG~L~eGEVfv~~s~~~~~-----------~-~~~~~~l~gg~VlVtRnP~l 586 (1022)
T 2j7n_A 519 QKRKCDTLKSKLNIRVGRSAYIYMIADFWGVLEENEVHVGFSSKFRD-----------E-EESFTLLSDCDVLVARSPAH 586 (1022)
T ss_dssp HHHHHHHHHHHCCBCCSSEEEEEEEECTTSCCCTTEEEEEEEEEEEE-----------T-TEEEEEECSEEEEEECSSCC
T ss_pred HHHHHHHHHHhhccccccceEEEEEecCCCccCCCeEEEEecccccc-----------C-CCCceeecCceEEEEeCCCc
Confidence 99999999999999999999999999999999999999999964211 0 11233554 69999999999
Q ss_pred CCCceEEEEeeeCCCCccCCCeEEeCCCCCCCcccccCCCc----eEEEecccCcCCCccc
Q 004909 667 HPGDVRVLKAVNVPALHHMVDCVVFPQKGMRYILTMLKPRL----LWYELNSSHALPRFIV 723 (724)
Q Consensus 667 HPGDIrvv~AV~~P~L~hL~dvIVFp~kG~Rpl~s~LSGg~----~~~~~~~~~~~p~~~~ 723 (724)
||||||+++||++|+||||+|||||||+|+||+|||||||| .++++||+.|||.|.|
T Consensus 587 hPGDIrvv~AV~~PeL~hL~DvIVFp~kG~Rplps~lSGGDLDGD~Y~ViWD~~Lv~~f~n 647 (1022)
T 2j7n_A 587 FPSDIQRVRAVFKPELHSLKDVIIFSTKGDVPLAKKLSGGDYDGDMAWVCWDPEIVDGFVN 647 (1022)
T ss_dssp SGGGEEEEEECCCGGGTTCCSEEEECSCSSSCHHHHTTTCCSSSCEEEEECCHHHHHTBCC
T ss_pred CcCceeEEEeccChhhhccCCeEEccCCCCCCChhHhcCCCCCCCeEEEEechhhcccccC
Confidence 99999999999999999999999999999999999999984 6999999999998865
No 2
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=40.50 E-value=28 Score=30.24 Aligned_cols=59 Identities=10% Similarity=0.208 Sum_probs=48.8
Q ss_pred hhhhHHHHHHHHHhcCeEEcceeEEEEeecCCCCCcceEEEEEeCCCCCHHHHHHHhcCCCc
Q 004909 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 384 (724)
Q Consensus 323 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SqLR~~s~wFfa~~~~lt~~~Ir~wmGdF~~ 384 (724)
....+.+++++++.+|+..|+-+.+.+||+ |+.=.+.+.-+++..+.+++.+-+..|..
T Consensus 20 Dl~~L~~~Vr~i~~~Gl~wg~~k~~piafG---ikkL~i~~vveDd~v~tD~lee~i~~~ed 78 (91)
T 1b64_A 20 DMAKLEECVRSIQADGLVWGSSKLVPVGYG---IKKLQIQCVVEDDKVGTDMLEEQITAFED 78 (91)
T ss_dssp CHHHHHHHHHHCCCTTCEEEEEEEEESSSS---CEEEEEEEEECTTSSCHHHHHHHHTTCTT
T ss_pred CHHHHHHHHHHhCcCCcEEEEEEEEEEEee---EEEEEEEEEEECCccChHHHHHHHHhccC
Confidence 367889999999999999999999999998 55545666667777889999888777654
No 3
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=37.67 E-value=31 Score=30.12 Aligned_cols=59 Identities=7% Similarity=0.165 Sum_probs=47.9
Q ss_pred hhhhHHHHHHHHHhcCeEEcceeEEEEeecCCCCCcceEEEEEeCCCCCHHHHHHHhcCCCc
Q 004909 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 384 (724)
Q Consensus 323 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SqLR~~s~wFfa~~~~lt~~~Ir~wmGdF~~ 384 (724)
....+.++|+.++.+|+.+|+-..+.+||+ |+.=.+.+.-+++..+.+++.+-+..|..
T Consensus 23 Dl~~L~~~Vr~i~~~Gl~wg~~k~~piafG---lkkL~i~~vveDd~~~tD~lee~i~~~ed 81 (94)
T 1f60_B 23 NLEEMVANVKAIEMEGLTWGAHQFIPIGFG---IKKLQINCVVEDDKVSLDDLQQSIEEDED 81 (94)
T ss_dssp CHHHHHHHHHTCCCTTEEEEEEEEEEEETT---EEEEEEEEEEETTTCCHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHhCcCCcEEEEEEEEEEeee---eEEEEEEEEEECCccChHHHHHHHHhccC
Confidence 378899999999999999999999999998 55445666667777888888887766654
No 4
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=35.63 E-value=28 Score=30.08 Aligned_cols=60 Identities=12% Similarity=0.093 Sum_probs=48.7
Q ss_pred hhhhHHHHHHHHHhcCeEEcceeEEEEeecCCCCCcceEEEEEeCCCCCHHHHHHHhcCCCcc
Q 004909 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI 385 (724)
Q Consensus 323 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SqLR~~s~wFfa~~~~lt~~~Ir~wmGdF~~i 385 (724)
....+.+++++++.+|+.+++-..+.+||+ |+.=.+.+.-+++..+.+++-+-+..|...
T Consensus 18 Dl~~L~~~vk~~~~~gl~w~~~k~~piafG---lk~L~i~~vveD~~~~td~lee~i~~~e~V 77 (89)
T 1gh8_A 18 DLEALKKEIQERIPEGTELHKIDEEPIAFG---LVALNVMVVVGDAEGGTEAAEESLSGIEGV 77 (89)
T ss_dssp CHHHHHHHHHHHSCTTSEECCCCEEECSSS---CEEEEEEEEESSSCGGGGHHHHHHTTSCSS
T ss_pred CHHHHHHHHHHhccCCcEEeeeeEEEEEcc---eeeEEEEEEEEcCCcChHHHHHHHhccCCc
Confidence 378899999999999999999999999998 555556666677777888888777777654
No 5
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=31.97 E-value=37 Score=29.52 Aligned_cols=59 Identities=10% Similarity=0.097 Sum_probs=47.3
Q ss_pred hhhhHHHHHHHHHhcCeEEcceeEEEEeecCCCCCcceEEEEEeCCCC-CHHHHHHHhcCCCc
Q 004909 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGL-TAAEIREWMGNFRE 384 (724)
Q Consensus 323 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SqLR~~s~wFfa~~~~l-t~~~Ir~wmGdF~~ 384 (724)
....+.+++++++.+|+.+++-..+.+||+ |+.=.+.+.-++... +.+++-+-+..|..
T Consensus 20 Dl~~L~~~vk~~~~~gl~w~~~k~~pIafG---lk~L~i~~vveD~~~~~tD~lee~i~~~e~ 79 (91)
T 2yy3_A 20 NLDELEEKLKKVIPEKYGLAKVEREPIAFG---LVALKFYVLGRDEEGYSFDEVAEKFEEVEN 79 (91)
T ss_dssp CHHHHHHHHHHHSCTTCEEEEEEEEECTTS---CEEEEEEEEECSSTTCCHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHhccCCcEEeeeeEEEEEcc---eeeEEEEEEEECCCccccHHHHHHHhcCCC
Confidence 378899999999999999999999999998 555556666677666 88888777665554
No 6
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.56 E-value=53 Score=25.86 Aligned_cols=44 Identities=27% Similarity=0.212 Sum_probs=30.3
Q ss_pred cccHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCC
Q 004909 508 FLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAILTDPLKAQEALELMSP 557 (724)
Q Consensus 508 ~LNRQ~I~iLs~lGV~devF~~lq~~~l~~l~~~l~d~~~a~~~l~~~~~ 557 (724)
-.|||.+..|.++|.+.+ ..+.+|+.... ...+.|.++|..++.
T Consensus 7 ~vn~qmlq~L~eMGFd~e----rae~Alk~Tg~--~Gle~AmewL~k~~~ 50 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQE----MAGRALKQTGS--RSIEAALEYISKMSG 50 (54)
T ss_dssp SCCHHHHHHHHHHHCCHH----HHHHHHHHHTS--CCHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHcCCCHH----HHHHHHHHhCc--ccHHHHHHHHHHhcC
Confidence 789999999999999976 23333333221 346778888877653
No 7
>3rkl_A STIV-A81; 4-helix bundle, hyperthermophilic viral protein, viral prote; 1.70A {Sulfolobus turreted icosahedral virus}
Probab=9.78 E-value=1.6e+02 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=23.4
Q ss_pred cchHHHHHHHHHcCccCcccccHHHHHhhCC
Q 004909 171 YEILFKINLLVQNGCVAGPLLDSNFYRLVDP 201 (724)
Q Consensus 171 f~v~fql~~lv~~g~l~~~~~~~~f~~~l~~ 201 (724)
-+|.|||..|+..----+..++.++|.+|..
T Consensus 33 aeivyqlaklieklsqyeeevdtelynllhe 63 (87)
T 3rkl_A 33 AEIVYQLAKLIEKLSQYEEEVDTELYNLLHE 63 (87)
T ss_dssp HHHHHHHHHHHHHHTTTCSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3789999999875444556788898888753
No 8
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=9.01 E-value=4.2e+02 Score=21.00 Aligned_cols=43 Identities=12% Similarity=-0.100 Sum_probs=29.0
Q ss_pred ccccccHHHHHHHhcCCCChHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHh
Q 004909 505 QPCFLNRQLISLLSTLGIWDEIFEKKQREAVRQLDAI-LTDPLKAQEALEL 554 (724)
Q Consensus 505 ~p~~LNRQ~I~iLs~lGV~devF~~lq~~~l~~l~~~-l~d~~~a~~~l~~ 554 (724)
.|...|.+.|.-|.+||.+.+.- ...|... -.|.+.|.++|-.
T Consensus 4 ~~~~~~~~~v~~L~~MGF~~~~a-------~~AL~~t~~~nve~A~ewLl~ 47 (64)
T 1whc_A 4 GSSGAELTALESLIEMGFPRGRA-------EKALALTGNQGIEAAMDWLME 47 (64)
T ss_dssp CCCCCCCCHHHHHHTTTCCHHHH-------HHHHHHHTSCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHcCCCHHHH-------HHHHHHhcCCCHHHHHHHHHh
Confidence 44567888999999999986432 2333343 2578888887743
No 9
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=8.91 E-value=8.1e+02 Score=23.58 Aligned_cols=59 Identities=14% Similarity=0.073 Sum_probs=38.8
Q ss_pred HHHHHhcCCCCcHHHHHHHHHCCCCC-CCchHHHHHHHHHHHHHHHhhccccceeecCceeeeeeeCCCC
Q 004909 549 QEALELMSPGENTNILKELLICGYKP-DAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETR 617 (724)
Q Consensus 549 ~~~l~~~~~~~~~~~l~~ml~~Gf~p-~~epfl~~~L~~~~~~~L~~Lk~K~RI~Vp~s~~L~GV~DetG 617 (724)
+++++........+++..|...||.. ++- -..+-|++|+ =.|++-++|.+.|.++.+.+
T Consensus 39 ~eiI~~~~I~TQeEL~~~L~~~Gi~viTQA---------TvSRDIkELg-lvKv~~~~G~~~Y~lp~~~~ 98 (180)
T 3v4g_A 39 KALLKEERFGSQGEIVEALKQEGFENINQS---------KVSRMLTKFG-AVRTRNAKMEMVYCLPTELG 98 (180)
T ss_dssp HHHHHHTCCCSHHHHHHHHHHTTCTTCCHH---------HHHHHHHHTT-CEEEECTTSCEEEECC----
T ss_pred HHHHhhCCcCCHHHHHHHHHHCCCcccCHH---------HHHHHHHHcC-CEEeeCCCCCEEEEeCCccc
Confidence 45666667778888899999999986 432 2233345553 45677778999999987654
No 10
>1gzs_B SOPE; toxin/cell cycle, complex (toxin/cell cycle protein), SOPE, CDC42, salmonella typhimurium, GEF, toxin, lipoprotein; 2.3A {Salmonella typhimurium} SCOP: a.168.1.1 PDB: 1r9k_A 1r6e_A
Probab=7.98 E-value=3.4e+02 Score=25.24 Aligned_cols=81 Identities=21% Similarity=0.359 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHH---HHhcCHHHHHHHHHhcCCC---CcHH-HHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhhc
Q 004909 524 DEIFEKKQREAVRQLD---AILTDPLKAQEALELMSPG---ENTN-ILKELLICGYKPDAEPFLSMMLQTFRASKLLELR 596 (724)
Q Consensus 524 devF~~lq~~~l~~l~---~~l~d~~~a~~~l~~~~~~---~~~~-~l~~ml~~Gf~p~~epfl~~~L~~~~~~~L~~Lk 596 (724)
..+-.++....|+.|+ .++.|+..++..++.+-.+ +... .-+.++.-|.+ -.|||+.+=++.+..-|-. -
T Consensus 5 ~k~VK~fmlq~L~sldi~g~a~kDp~yarQt~Ea~lsavyS~~Kd~~c~~l~skg~~--i~pflkeiGeAA~naGLPG-e 81 (165)
T 1gzs_B 5 NKVVKDFMLQTLNDIDIRGSASKDPAYASQTREAILSAVYSKNKDQCCNLLISKGIN--IAPFLQEIGEAAKNAGLPG-T 81 (165)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--SHHHHHHHHHHHHHTTCCE-E
T ss_pred hHHHHHHHHHHHHhhcccCccccChHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCC--chHHHHHHHHHHHhCCCCC-c
Confidence 3444555566677776 7789999998887753111 1111 23445677886 4799999888777654422 1
Q ss_pred cccceeecCce
Q 004909 597 TKTRIFIPNGR 607 (724)
Q Consensus 597 ~K~RI~Vp~s~ 607 (724)
.|--++.|.|+
T Consensus 82 ~KngVFtPsGa 92 (165)
T 1gzs_B 82 TKNDVFTPSGA 92 (165)
T ss_dssp EETTEEEETTC
T ss_pred ccCCccCCCCC
Confidence 35556666543
Done!