Query 004909
Match_columns 724
No_of_seqs 245 out of 447
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 09:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004909.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/004909hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1f60b_ d.58.12.1 (B:) Guanine 40.6 13 0.00091 30.3 4.2 59 323-384 19-77 (90)
2 d1b64a_ d.58.12.1 (A:) Guanine 38.9 14 0.001 30.0 4.3 58 324-384 21-78 (91)
3 d1gh8a_ d.58.12.1 (A:) aEF-1be 35.9 13 0.00095 30.1 3.6 59 324-385 19-77 (89)
4 d1jjcb2 a.6.1.1 (B:400-474) Do 27.6 22 0.0016 27.5 3.4 67 370-456 7-74 (75)
5 d1aoya_ a.4.5.3 (A:) Arginine 21.6 1.6E+02 0.011 22.8 7.6 60 549-618 15-75 (78)
6 d1gtma2 c.58.1.1 (A:3-180) Glu 11.2 23 0.0017 32.1 -0.1 15 462-476 97-111 (178)
7 d1x4ka2 g.39.1.3 (A:8-34) Four 11.1 37 0.0027 21.3 0.8 18 16-33 7-26 (27)
8 d1leha2 c.58.1.1 (A:1-134) Leu 10.9 34 0.0025 29.5 0.9 15 462-476 75-89 (134)
9 d1v9la2 c.58.1.1 (A:4-179) Glu 10.1 25 0.0018 31.9 -0.4 16 461-476 96-111 (176)
10 d1b26a2 c.58.1.1 (A:4-178) Glu 9.7 35 0.0026 30.8 0.5 16 461-476 95-110 (175)
No 1
>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=40.56 E-value=13 Score=30.28 Aligned_cols=59 Identities=7% Similarity=0.165 Sum_probs=48.1
Q ss_pred hhhhHHHHHHHHHhcCeEEcceeEEEEeecCCCCCcceEEEEEeCCCCCHHHHHHHhcCCCc
Q 004909 323 TRTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 384 (724)
Q Consensus 323 ~~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SqLR~~s~wFfa~~~~lt~~~Ir~wmGdF~~ 384 (724)
....+.+.++.++.+|..++.-+.+.+||+ |+.=.+.+.-++...+.+++.+-+..+..
T Consensus 19 Dl~~l~~~ik~i~~~gl~~g~~~~~PiafG---lkkL~i~~vveDd~~~~D~lee~i~~~Ed 77 (90)
T d1f60b_ 19 NLEEMVANVKAIEMEGLTWGAHQFIPIGFG---IKKLQINCVVEDDKVSLDDLQQSIEEDED 77 (90)
T ss_dssp CHHHHHHHHHTCCCTTEEEEEEEEEEEETT---EEEEEEEEEEETTTCCHHHHHHHHHTCTT
T ss_pred CHHHHHHHHHHhCcCccEEeEEEEEEEeee---eeeEEEEEEEEeCCcCHHHHHHHHHhhcC
Confidence 367888999999999999999999999998 55445666667777889999888776653
No 2
>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.87 E-value=14 Score=29.96 Aligned_cols=58 Identities=10% Similarity=0.211 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHhcCeEEcceeEEEEeecCCCCCcceEEEEEeCCCCCHHHHHHHhcCCCc
Q 004909 324 RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFRE 384 (724)
Q Consensus 324 ~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SqLR~~s~wFfa~~~~lt~~~Ir~wmGdF~~ 384 (724)
...+.+.++.++.+|+.++..+.+.+||+ |+.=.+.|.-+++..+.+++.+-+..+..
T Consensus 21 l~~l~~~vk~i~~~gl~wg~~k~~PIaFG---lkkL~i~~vveDd~~~~D~lee~i~~~Ed 78 (91)
T d1b64a_ 21 MAKLEECVRSIQADGLVWGSSKLVPVGYG---IKKLQIQCVVEDDKVGTDMLEEQITAFED 78 (91)
T ss_dssp HHHHHHHHHHCCCTTCEEEEEEEEESSSS---CEEEEEEEEECTTSSCHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHhccccCcEeeEEEEEEEee---eeeEEEEEEEEeCCcChHHHHHHHHhhcC
Confidence 67888999999999999999999999998 45445666667777888999888876653
No 3
>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=35.92 E-value=13 Score=30.07 Aligned_cols=59 Identities=12% Similarity=0.094 Sum_probs=47.5
Q ss_pred hhhHHHHHHHHHhcCeEEcceeEEEEeecCCCCCcceEEEEEeCCCCCHHHHHHHhcCCCcc
Q 004909 324 RTRIYTRILSTLRNGILIGDRKFEFLAFSSSQLRESSAWMFASRYGLTAAEIREWMGNFREI 385 (724)
Q Consensus 324 ~~~i~~Rv~~~L~~Gi~I~gR~y~FLafS~SqLR~~s~wFfa~~~~lt~~~Ir~wmGdF~~i 385 (724)
.+.+.+.++.++.+|+.+++-..+.+||+ |+.=.+.+.-++.....+.+-+-+..+...
T Consensus 19 l~~l~~~ik~~~~~g~~~~~~~~~PiaFG---Lk~L~v~~vv~D~~g~~D~lee~i~~ie~V 77 (89)
T d1gh8a_ 19 LEALKKEIQERIPEGTELHKIDEEPIAFG---LVALNVMVVVGDAEGGTEAAEESLSGIEGV 77 (89)
T ss_dssp HHHHHHHHHHHSCTTSEECCCCEEECSSS---CEEEEEEEEESSSCGGGGHHHHHHTTSCSS
T ss_pred HHHHHHHHHhhccCCcEEEEEEEEEEEcc---eEeEEEEEEEEcCCcChHHHHHHHhccCCC
Confidence 67899999999999999999999999998 555556667777667788887777766543
No 4
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=27.56 E-value=22 Score=27.51 Aligned_cols=67 Identities=18% Similarity=0.266 Sum_probs=45.6
Q ss_pred CCHHHHHHHhc-CCCcccCHHHHHHHhccccCCCccceeeecCcEEEeCCeeccccCcceeeccccccccHHHHHHHHHH
Q 004909 370 LTAAEIREWMG-NFREIRNVAKYAARLGQSFSSSKETLSVHMDEIEIIPDVKIEIGKTKYVFSDGIGKVSAEFARKVASK 448 (724)
Q Consensus 370 lt~~~Ir~wmG-dF~~i~~vaK~aARlgq~FSsT~~tv~v~~~~i~~i~DI~~~~~g~~~~FTDG~G~IS~~lA~~I~~~ 448 (724)
++.+.+.+-+| +++. ..+.++..|||..++.+..++.+...-+ -.||. +-.+++++|++-
T Consensus 7 l~~~~i~~~lG~~i~~-~~i~~~L~~Lg~~~~~~~~~~~V~vPs~--R~Di~----------------~~~DliEEi~R~ 67 (75)
T d1jjcb2 7 FRPEYANRLLGTSYPE-AEQIAILKRLGCRVEGEGPTYRVTPPSH--RLDLR----------------LEEDLVEEVARI 67 (75)
T ss_dssp ECHHHHHHHHTCCCCH-HHHHHHHHHTTCEEECSSSSEEEECCTT--CTTCC----------------SHHHHHHHHHHH
T ss_pred ECHHHHHHHhCCCCCH-HHHHHHHHHcCCceEecCCcEEEecchh--ccccC----------------CcchHHHHHHHH
Confidence 56788888888 4544 4688899999988766655444432222 25775 225799999999
Q ss_pred cCCCCCCC
Q 004909 449 CGLKDNPP 456 (724)
Q Consensus 449 l~l~~~~P 456 (724)
+|+ +..|
T Consensus 68 ~Gy-d~IP 74 (75)
T d1jjcb2 68 QGY-ETIP 74 (75)
T ss_dssp HCG-GGSC
T ss_pred hCc-cCCC
Confidence 998 5455
No 5
>d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=21.55 E-value=1.6e+02 Score=22.78 Aligned_cols=60 Identities=12% Similarity=0.017 Sum_probs=41.5
Q ss_pred HHHHHhcCCCCcHHHHHHHHHCCCC-CCCchHHHHHHHHHHHHHHHhhccccceeecCceeeeeeeCCCCC
Q 004909 549 QEALELMSPGENTNILKELLICGYK-PDAEPFLSMMLQTFRASKLLELRTKTRIFIPNGRSMMGCLDETRT 618 (724)
Q Consensus 549 ~~~l~~~~~~~~~~~l~~ml~~Gf~-p~~epfl~~~L~~~~~~~L~~Lk~K~RI~Vp~s~~L~GV~DetG~ 618 (724)
.+++.....+...+++..|...||. ..+- -..+-|++|. -.+++.++|.+.|.+++|.++
T Consensus 15 ~~li~~~~i~tQ~eL~~~L~~~G~~~vTQa---------TiSRDL~eLg-~vKv~~~~g~~~Y~lp~e~~~ 75 (78)
T d1aoya_ 15 KALLKEEKFSSQGEIVAALQEQGFDNINQS---------KVSRMLTKFG-AVRTRNAKMEMVYCLPAELGV 75 (78)
T ss_dssp HHHHHTCCCCSHHHHHHHHHHHTCSSCCHH---------HHHHHHHHHT-CEEEECTTSCEEEECCSSCCC
T ss_pred HHHHHhCCcCCHHHHHHHHHHcCCcchhHH---------HHHHHHHHhC-CEEeeCCCCCEEEEeCCCCCC
Confidence 3566666777778888888999995 4421 2233344452 566777889999999998764
No 6
>d1gtma2 c.58.1.1 (A:3-180) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=11.16 E-value=23 Score=32.12 Aligned_cols=15 Identities=47% Similarity=0.833 Sum_probs=13.6
Q ss_pred eecCceEEEEeCCCC
Q 004909 462 RYGGYKGVVAADPTS 476 (724)
Q Consensus 462 R~gG~KGvl~vdp~~ 476 (724)
.+||+||.+.+||..
T Consensus 97 p~GG~Kggi~~dP~~ 111 (178)
T d1gtma2 97 PYGGGKGGIIVDPKK 111 (178)
T ss_dssp SCEEEEEEEECCGGG
T ss_pred CCCCCceeEecCCCC
Confidence 589999999999984
No 7
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.13 E-value=37 Score=21.28 Aligned_cols=18 Identities=22% Similarity=0.154 Sum_probs=13.9
Q ss_pred EEcccceEEEEE--EeecCe
Q 004909 16 NFGFGMRKINFL--LSHLGE 33 (724)
Q Consensus 16 ~~~~~~~~~~~~--~~~~~~ 33 (724)
.++||.||++|- .||..|
T Consensus 7 tiMPGsrKme~kG~~WHEtC 26 (27)
T d1x4ka2 7 TIMPGTRKMEYKGSSWHETC 26 (27)
T ss_dssp CCCSSSCEEEETTEEEETTT
T ss_pred cccCCceeecccCCcccccc
Confidence 478999999986 666654
No 8
>d1leha2 c.58.1.1 (A:1-134) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}
Probab=10.87 E-value=34 Score=29.49 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=13.5
Q ss_pred eecCceEEEEeCCCC
Q 004909 462 RYGGYKGVVAADPTS 476 (724)
Q Consensus 462 R~gG~KGvl~vdp~~ 476 (724)
-+||+||++..||..
T Consensus 75 p~GGgK~vI~~dp~~ 89 (134)
T d1leha2 75 NLGGGKTVIIGDPFA 89 (134)
T ss_dssp SCEEEEEEEESCTTT
T ss_pred CCCCcceeeecCCCC
Confidence 489999999999985
No 9
>d1v9la2 c.58.1.1 (A:4-179) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}
Probab=10.07 E-value=25 Score=31.87 Aligned_cols=16 Identities=50% Similarity=0.958 Sum_probs=13.7
Q ss_pred EeecCceEEEEeCCCC
Q 004909 461 IRYGGYKGVVAADPTS 476 (724)
Q Consensus 461 iR~gG~KGvl~vdp~~ 476 (724)
+.+||+||++.+||..
T Consensus 96 lp~GGgKggI~~dp~~ 111 (176)
T d1v9la2 96 LPYGGAKGAVRVDPKK 111 (176)
T ss_dssp CSCCEEEEEECSCGGG
T ss_pred CCccCccceeecCCCC
Confidence 3589999999999974
No 10
>d1b26a2 c.58.1.1 (A:4-178) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=9.67 E-value=35 Score=30.79 Aligned_cols=16 Identities=44% Similarity=0.794 Sum_probs=13.8
Q ss_pred EeecCceEEEEeCCCC
Q 004909 461 IRYGGYKGVVAADPTS 476 (724)
Q Consensus 461 iR~gG~KGvl~vdp~~ 476 (724)
+.|||+||.+.+||..
T Consensus 95 lP~GGgKggi~~dP~~ 110 (175)
T d1b26a2 95 LPFGGGKGGVRVDPKK 110 (175)
T ss_dssp CSCEEEEEEEECCGGG
T ss_pred CccccccceeecCCCC
Confidence 3589999999999974
Done!