Your job contains 1 sequence.
>004910
MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV
LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR
VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL
RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI
ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS
ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV
SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREV
GNFY
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 004910
(724 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2014525 - symbol:UVH6 "ULTRAVIOLET HYPERSENSIT... 3388 0. 1
ZFIN|ZDB-GENE-040426-997 - symbol:ercc2 "excision repair ... 2161 7.4e-224 1
UNIPROTKB|A6QLJ0 - symbol:ERCC2 "TFIIH basal transcriptio... 2156 2.5e-223 1
UNIPROTKB|Q91941 - symbol:ERCC2/XPD "ERCC2/XPD protein" s... 2155 3.2e-223 1
UNIPROTKB|F1N2P3 - symbol:ERCC2 "TFIIH basal transcriptio... 2154 4.1e-223 1
UNIPROTKB|P18074 - symbol:ERCC2 "TFIIH basal transcriptio... 2152 6.7e-223 1
RGD|1309109 - symbol:Ercc2 "excision repair cross-complem... 2147 2.3e-222 1
UNIPROTKB|Q60452 - symbol:ERCC2 "TFIIH basal transcriptio... 2146 2.9e-222 1
MGI|MGI:95413 - symbol:Ercc2 "excision repair cross-compl... 2144 4.7e-222 1
FB|FBgn0261850 - symbol:Xpd "Xeroderma pigmentosum D" spe... 2130 1.4e-220 1
UNIPROTKB|F1PMH9 - symbol:ERCC2 "Uncharacterized protein"... 2129 1.8e-220 1
DICTYBASE|DDB_G0267414 - symbol:repD "transcription facto... 2128 2.3e-220 1
UNIPROTKB|A8MX75 - symbol:ERCC2 "TFIIH basal transcriptio... 2071 2.6e-214 1
POMBASE|SPAC1D4.12 - symbol:rad15 "transcription factor T... 2030 5.7e-210 1
UNIPROTKB|E7EVE9 - symbol:ERCC2 "TFIIH basal transcriptio... 1642 6.3e-203 2
ASPGD|ASPL0000055138 - symbol:AN9436 species:162425 "Emer... 1949 2.2e-201 1
CGD|CAL0002854 - symbol:RAD3 species:5476 "Candida albica... 1928 3.6e-199 1
UNIPROTKB|Q5AFE9 - symbol:RAD3 "Putative uncharacterized ... 1928 3.6e-199 1
SGD|S000000973 - symbol:RAD3 "5' to 3' DNA helicase" spec... 1908 4.8e-197 1
UNIPROTKB|J9NWT1 - symbol:ERCC2 "Uncharacterized protein"... 1907 6.1e-197 1
WB|WBGene00021752 - symbol:Y50D7A.2 species:6239 "Caenorh... 1525 1.8e-156 1
UNIPROTKB|K7EIT8 - symbol:ERCC2 "TFIIH basal transcriptio... 752 1.5e-74 1
UNIPROTKB|K7EKF3 - symbol:ERCC2 "TFIIH basal transcriptio... 600 1.9e-58 1
ZFIN|ZDB-GENE-050306-11 - symbol:rtel1 "regulator of telo... 348 1.2e-51 3
UNIPROTKB|Q16X92 - symbol:AAEL008960 "Regulator of telome... 366 1.1e-49 3
MGI|MGI:2139369 - symbol:Rtel1 "regulator of telomere elo... 321 1.4e-49 3
UNIPROTKB|B4PZB4 - symbol:GE16425 "Regulator of telomere ... 341 4.6e-49 3
UNIPROTKB|Q6H1L8 - symbol:Rtel1 "Regulator of telomere el... 313 1.1e-48 3
UNIPROTKB|B3NSW1 - symbol:GG18780 "Regulator of telomere ... 340 8.6e-48 3
UNIPROTKB|Q7QEI1 - symbol:AGAP000634 "Regulator of telome... 393 1.1e-47 2
FB|FBgn0029798 - symbol:CG4078 species:7227 "Drosophila m... 342 1.7e-47 3
UNIPROTKB|D4ACH4 - symbol:Rtel1 "Regulator of telomere el... 311 3.6e-47 3
RGD|1306721 - symbol:Rtel1 "regulator of telomere elongat... 311 5.4e-47 3
UNIPROTKB|E1BTS7 - symbol:Gga.49055 "Uncharacterized prot... 314 1.7e-46 3
UNIPROTKB|E1BTS6 - symbol:Gga.49055 "Uncharacterized prot... 314 2.0e-46 3
UNIPROTKB|F1NE49 - symbol:Gga.49055 "Uncharacterized prot... 314 2.0e-46 3
UNIPROTKB|B4GU19 - symbol:GL14463 "Regulator of telomere ... 346 3.9e-46 3
UNIPROTKB|Q29FS3 - symbol:GA17940 "Regulator of telomere ... 346 3.9e-46 3
UNIPROTKB|B4M891 - symbol:GJ16649 "Regulator of telomere ... 338 1.2e-45 3
DICTYBASE|DDB_G0286621 - symbol:fncJ "DEAD/DEAH box helic... 349 1.4e-45 3
UNIPROTKB|B0W9F4 - symbol:CPIJ003765 "Regulator of telome... 348 1.7e-45 4
UNIPROTKB|Q9NZ71 - symbol:RTEL1 "Regulator of telomere el... 309 2.7e-45 3
UNIPROTKB|F6WH68 - symbol:RTEL1 "Protein RTEL1-TNFRSF6B" ... 309 5.0e-45 3
UNIPROTKB|B4NDG5 - symbol:GK24923 "Regulator of telomere ... 343 5.6e-45 3
UNIPROTKB|B4L1Z2 - symbol:GI15901 "Regulator of telomere ... 337 1.1e-44 3
UNIPROTKB|B3MSG8 - symbol:GF20802 "Regulator of telomere ... 339 1.6e-44 3
UNIPROTKB|Q5RE34 - symbol:RTEL1 "Regulator of telomere el... 314 2.3e-44 3
UNIPROTKB|E2RLA6 - symbol:RTEL1 "Uncharacterized protein"... 318 4.2e-44 2
FB|FBgn0026876 - symbol:CG11403 species:7227 "Drosophila ... 346 1.3e-43 3
UNIPROTKB|A4K436 - symbol:RTEL1 "Regulator of telomere el... 315 1.8e-43 2
ZFIN|ZDB-GENE-041114-191 - symbol:ddx11 "DEAD/H (Asp-Glu-... 325 4.2e-43 3
POMBASE|SPAC3G6.11 - symbol:chl1 "ATP-dependent DNA helic... 340 1.3e-42 4
UNIPROTKB|E2RGR5 - symbol:DDX11 "Uncharacterized protein"... 315 3.2e-42 3
WB|WBGene00021759 - symbol:Y50D7A.11 species:6239 "Caenor... 448 8.6e-42 1
UNIPROTKB|B4JNS2 - symbol:GH24089 "Regulator of telomere ... 336 5.9e-41 2
UNIPROTKB|A8MPP1 - symbol:DDX11L8 "Putative ATP-dependent... 315 9.1e-41 3
UNIPROTKB|D6RA96 - symbol:RTEL1-TNFRSF6B "Protein RTEL1-T... 257 1.1e-40 3
CGD|CAL0004313 - symbol:orf19.2000 species:5476 "Candida ... 299 2.8e-40 3
UNIPROTKB|Q92771 - symbol:DDX12P "Putative ATP-dependent ... 320 7.2e-40 3
WB|WBGene00009124 - symbol:rtel-1 species:6239 "Caenorhab... 292 1.6e-39 2
UNIPROTKB|Q93575 - symbol:rtel-1 "Regulator of telomere e... 292 1.6e-39 2
TAIR|locus:2017894 - symbol:AT1G79890 species:3702 "Arabi... 272 3.2e-39 4
TAIR|locus:2030497 - symbol:AT1G20720 species:3702 "Arabi... 204 1.7e-38 4
UNIPROTKB|J3QSE8 - symbol:BRIP1 "Fanconi anemia group J p... 227 1.4e-37 3
SGD|S000005929 - symbol:CHL1 "Probable DNA helicase" spec... 250 3.3e-37 3
UNIPROTKB|Q9BX63 - symbol:BRIP1 "Fanconi anemia group J p... 227 3.5e-37 3
MGI|MGI:2443590 - symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/H... 305 4.2e-37 3
UNIPROTKB|B4I0K4 - symbol:GM12432 "Regulator of telomere ... 343 6.2e-37 3
UNIPROTKB|F1NN99 - symbol:DDX11 "Uncharacterized protein"... 308 7.1e-36 2
UNIPROTKB|F1SK84 - symbol:DDX11 "Uncharacterized protein"... 316 7.6e-36 2
UNIPROTKB|Q96FC9 - symbol:DDX11 "Probable ATP-dependent R... 265 1.6e-35 3
UNIPROTKB|J9NVZ8 - symbol:BRIP1 "Uncharacterized protein"... 220 3.2e-35 3
UNIPROTKB|E2RHN5 - symbol:BRIP1 "Uncharacterized protein"... 220 3.5e-35 3
UNIPROTKB|E1C1X9 - symbol:BRIP1 "Fanconi anemia group J p... 225 2.3e-34 3
UNIPROTKB|Q3YK19 - symbol:BRIP1 "Fanconi anemia group J p... 225 2.3e-34 3
UNIPROTKB|D4ACW5 - symbol:Brip1 "Protein Brip1" species:1... 228 2.7e-34 3
ASPGD|ASPL0000038959 - symbol:AN10414 species:162425 "Eme... 291 3.2e-34 2
MGI|MGI:2442836 - symbol:Brip1 "BRCA1 interacting protein... 227 6.0e-34 4
RGD|1306675 - symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) ... 299 1.2e-31 3
UNIPROTKB|F1MWN6 - symbol:RTEL1 "Regulator of telomere el... 222 2.1e-31 2
ZFIN|ZDB-GENE-081107-11 - symbol:brip1 "BRCA1 interacting... 213 4.3e-30 3
WB|WBGene00010839 - symbol:chl-1 species:6239 "Caenorhabd... 275 6.0e-30 2
UNIPROTKB|B4E0F6 - symbol:ERCC2 "TFIIH basal transcriptio... 339 7.0e-30 1
WB|WBGene00001049 - symbol:dog-1 species:6239 "Caenorhabd... 249 7.1e-30 3
UNIPROTKB|E1BNG9 - symbol:BRIP1 "Uncharacterized protein"... 353 1.3e-28 1
UNIPROTKB|F1MMS0 - symbol:BRIP1 "Uncharacterized protein"... 353 1.5e-28 1
UNIPROTKB|E1BL06 - symbol:E1BL06 "Uncharacterized protein... 202 2.0e-27 3
RGD|1307659 - symbol:Brip1 "BRCA1 interacting protein C-t... 228 3.1e-26 4
TAIR|locus:2016209 - symbol:AT1G79950 species:3702 "Arabi... 211 1.9e-25 2
UNIPROTKB|I3LAE6 - symbol:I3LAE6 "Uncharacterized protein... 282 9.9e-24 1
UNIPROTKB|I3LHB7 - symbol:ERCC2 "Uncharacterized protein"... 282 9.9e-24 1
UNIPROTKB|I3LNA6 - symbol:I3LNA6 "Uncharacterized protein... 274 7.2e-23 1
UNIPROTKB|A8WS58 - symbol:rtel-1 "Regulator of telomere e... 298 1.1e-22 1
UNIPROTKB|I3LBL1 - symbol:BRIP1 "Uncharacterized protein"... 163 3.4e-20 3
UNIPROTKB|G3N0I3 - symbol:BRIP1 "Uncharacterized protein"... 256 3.5e-18 2
UNIPROTKB|K7ENL1 - symbol:ERCC2 "TFIIH basal transcriptio... 186 1.6e-15 2
GENEDB_PFALCIPARUM|MAL13P1.134 - symbol:MAL13P1.134 "heli... 117 8.9e-15 4
UNIPROTKB|Q8IE72 - symbol:MAL13P1.134 "DEAD box helicase,... 117 8.9e-15 4
UNIPROTKB|Q724Q2 - symbol:LMOf2365_0172 "Putative unchara... 141 7.4e-14 3
UNIPROTKB|H0YFY8 - symbol:DDX11 "Probable ATP-dependent R... 173 5.0e-12 1
WARNING: Descriptions of 12 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2014525 [details] [associations]
symbol:UVH6 "ULTRAVIOLET HYPERSENSITIVE 6" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0009408
"response to heat" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=RCA] [GO:0006457 "protein folding" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0010212 "response to ionizing radiation" evidence=RCA]
[GO:0010286 "heat acclimation" evidence=RCA] [GO:0042542 "response
to hydrogen peroxide" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009411 "response to UV" evidence=IMP] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005524 GO:GO:0005634 GO:GO:0009411 GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006351
GO:GO:0051539 GO:GO:0009408 GO:GO:0004003 GO:GO:0006289
eggNOG:COG1199 TIGRFAMs:TIGR00604 EMBL:AY090788 EMBL:AF188623
EMBL:AC005278 EMBL:AY062471 EMBL:AY090915 EMBL:BT010344
IPI:IPI00543586 PIR:C86163 RefSeq:NP_171818.1 RefSeq:NP_849584.1
UniGene:At.10863 ProteinModelPortal:Q8W4M7 SMR:Q8W4M7 IntAct:Q8W4M7
STRING:Q8W4M7 PaxDb:Q8W4M7 PRIDE:Q8W4M7 EnsemblPlants:AT1G03190.1
EnsemblPlants:AT1G03190.2 GeneID:839557 KEGG:ath:AT1G03190
GeneFarm:4445 TAIR:At1g03190 HOGENOM:HOG000205390 InParanoid:Q8W4M7
KO:K10844 OMA:KDVDGKC PhylomeDB:Q8W4M7 ProtClustDB:CLSN2679645
Genevestigator:Q8W4M7 GermOnline:AT1G03190 Uniprot:Q8W4M7
Length = 758
Score = 3388 (1197.7 bits), Expect = 0., P = 0.
Identities = 639/719 (88%), Positives = 685/719 (95%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
MIFK+EDVTVYFPYDNIYPEQY YM+ELKRALDAKGHCLLEMPTGTGKTIALLSLITSY
Sbjct: 1 MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
LS+P++P+KL+YCTRTVHEMEKTL ELKLLH+YQ RHLG AKILA+GLSSRKNLCVN++
Sbjct: 61 LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
VLAAENRDSVDAACRKRTASWVRAL+ ENPN+E C+FFENYEKAA A+LPPGVYTL+DL
Sbjct: 121 VLAAENRDSVDAACRKRTASWVRALSTENPNVELCDFFENYEKAAENALLPPGVYTLEDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
RAFGK +GWCPYFLARHM+QFANV+VYSYQYLLDPKVAG ISKE+QKESVVVFDEAHNID
Sbjct: 181 RAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIEALSVSVRR TLEGA RNL++I QEI+RFKATDAGRLRAEYNRLVEGLALRG+L
Sbjct: 241 NVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDLSG 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D WL+NPALP DILKEAVPGNIRRAEHF+HVLRRL+QYL RL+TENVEKE PVSFV+S
Sbjct: 301 GDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFVSS 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ + AGI+QKTL+FCY+RL SLMLTLEITDTDEFL IQT+CDFATLVGTY RGFSIIIEP
Sbjct: 361 LNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
+DERMPHIPDP+LQLSCHDASLA+KPVFDRFQSVVITSGTLSPIDLYPRLLNF PVVSRS
Sbjct: 421 YDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVSRS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
FKMS+TRDCICPMVLTRGSDQLPVSTKFDMRSDPGV RNYGKLLVEMVSIVPDG+VCFFV
Sbjct: 481 FKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCFFV 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SYSYMD IIATWN++GILKEIMQ KLVFIETQDVVETTLALDNYR+ACDCGRGAVFFSVA
Sbjct: 541 SYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA 660
RGKVAEGIDFDRHYGRLV+M+GVPFQYTLSKIL ARLEYL DTFQIKEGDFLTFDALRQA
Sbjct: 601 RGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALRQA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIARE 719
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMA+HIARE
Sbjct: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIARE 719
>ZFIN|ZDB-GENE-040426-997 [details] [associations]
symbol:ercc2 "excision repair cross-complementing
rodent repair deficiency, complementation group 2" species:7955
"Danio rerio" [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 ZFIN:ZDB-GENE-040426-997
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
GO:GO:0006289 TIGRFAMs:TIGR00604 GeneTree:ENSGT00550000075092
EMBL:CR855332 EMBL:JN172105 IPI:IPI00495155 UniGene:Dr.5152
Ensembl:ENSDART00000141618 Uniprot:F1Q5E7
Length = 760
Score = 2161 (765.8 bits), Expect = 7.4e-224, P = 7.4e-224
Identities = 404/718 (56%), Positives = 526/718 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQYSYMLELKR LDAKGH +LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KL+YC+RTV E+EK + EL+ L +Y ++ G LA+ LSSRKNLC++
Sbjct: 61 KTYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYSKQTGVKNDFLALALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VD C TAS++RA NPN C+F+E ++ +PPG+Y L DL
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQHQSNPNQPVCQFYEEFDNVGRQVPIPPGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+++GWCPYFLAR+ + AN+VVYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ N+ + I R K TDA +LR EY RLVEGL
Sbjct: 241 NVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +LSNP LP +IL+EAVPG+IR AEHF+ ++R ++YL+ RL +V +E F+
Sbjct: 301 TDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I ID+K LRFC ERL SL+ TLEI D +F I I FATLV TY++GF+IIIEP
Sbjct: 361 IFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSPITLISHFATLVSTYSKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+++ P I +PVL SC D S+A+KPVF RFQ+V+ITSGTLSP+D+YPR+L+F PV S
Sbjct: 421 FEDKTPTIANPVLHFSCMDPSIAIKPVFGRFQTVIITSGTLSPLDIYPRILDFRPVTMAS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CP+++ RG+DQ+ +++KF+ R D V RNYG LL+EM +IVPDGIV FF
Sbjct: 481 FTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ I+A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYMYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA 660
RGKV+EGIDF H+GR VIMFGVP+ YT S+IL ARLEYLRD FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
AQCVGR IR K DYG+MIFADKRY+R DKR KLP WI HL D LNL+ D + +++
Sbjct: 661 AQCVGRAIRGKTDYGLMIFADKRYARADKRGKLPRWIQEHLTDGSLNLTIDETVQLSK 718
>UNIPROTKB|A6QLJ0 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9913 "Bos taurus" [GO:0006468
"protein phosphorylation" evidence=ISS] [GO:0008353 "RNA polymerase
II carboxy-terminal domain kinase activity" evidence=ISS]
[GO:0071817 "MMXD complex" evidence=ISS] [GO:0005819 "spindle"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0007059 "chromosome segregation"
evidence=ISS] [GO:0005675 "holo TFIIH complex" evidence=ISS]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0035315 "hair cell differentiation" evidence=ISS] [GO:0004672
"protein kinase activity" evidence=ISS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=ISS] [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=ISS]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008022 "protein C-terminus binding"
evidence=ISS] [GO:0006979 "response to oxidative stress"
evidence=ISS] [GO:0000075 "cell cycle checkpoint" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
GO:GO:0007059 GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0051539 GO:GO:0006366
GO:GO:0004003 GO:GO:0071817 GO:GO:0008022 GO:GO:0000075
GO:GO:0005675 eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 KO:K10844 EMBL:BC147982 IPI:IPI00866827
RefSeq:NP_001096787.1 UniGene:Bt.4215 STRING:A6QLJ0 PRIDE:A6QLJ0
GeneID:100125238 KEGG:bta:100125238 CTD:2068 HOVERGEN:HBG051498
NextBio:20788783 GO:GO:0033683 Uniprot:A6QLJ0
Length = 760
Score = 2156 (764.0 bits), Expect = 2.5e-223, P = 2.5e-223
Identities = 402/718 (55%), Positives = 530/718 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KAVGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++LKEAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI+D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA 660
RGKV+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLRD FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
AQCVGR IR K DYG+M+FADKR++R DKR KLP WI HL DA+LNL+ D + +A+
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAK 718
>UNIPROTKB|Q91941 [details] [associations]
symbol:ERCC2/XPD "ERCC2/XPD protein" species:8083
"Xiphophorus maculatus" [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISS] [GO:0006917 "induction of
apoptosis" evidence=ISS] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISS] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0006917 GO:GO:0003677 GO:GO:0004003
GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0043139 HOVERGEN:HBG051498
EMBL:U17896 PIR:I51720 ProteinModelPortal:Q91941 Uniprot:Q91941
Length = 760
Score = 2155 (763.7 bits), Expect = 3.2e-223, P = 3.2e-223
Identities = 401/718 (55%), Positives = 525/718 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M +E + VYFPYD IYPEQYSYMLELKR LDAKGH +LEMP+GTGKTI+LLSLI +Y
Sbjct: 1 MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P + KLIYC+RTV E+EK + EL+ L + + G LA+ LSSRKNLC++
Sbjct: 61 RAFPLDVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALSLSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V + VD C TAS++RA NPN C F+E ++ LP G+Y L DL
Sbjct: 121 VSSLRFGKEVDGKCHSLTASYIRAQRHSNPNQPVCRFYEEFDAVGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ FG+++GWCPY+LAR+ + AN+VVYSY YLLDPK+A ++SKE+ K+SVVVFDEAHNID
Sbjct: 181 KDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+T++ N+ + I + K TDA +LR EY RLVEGL
Sbjct: 241 NVCIDSMSVNITRRTVDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +L+NP LP ++L+EAVPG+IR AEHF+ LRR ++YL+ RL ++V +E F+
Sbjct: 301 TDIYLANPVLPDEVLQEAVPGSIRTAEHFVGFLRRFLEYLKARLRVQHVVQESAPQFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I ID+K LRFC ERL L+ TLEI D +F + I +FATLV TY++GF+IIIEP
Sbjct: 361 IFDKVCIDRKPLRFCAERLQCLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F++R P I +PVL SC D S+A+KPVF RFQSV+ITSGTLSP+D+YPR+L+F PV S
Sbjct: 421 FEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPRILDFRPVTMAS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CP+++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ I+A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYVYMENIVASWYEQGILENIQKNKLIFIETQDAAETSMALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA 660
RGKV+EGIDF H+GR VIMFGVP+ YT S+IL ARLEYLRD FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
AQC+GR IR K DYG+MIFADKRY+R DKR KLP WI H+ D LNL+ D A+ +++
Sbjct: 661 AQCLGRAIRGKTDYGLMIFADKRYARSDKRGKLPRWIQEHINDGSLNLTVDEAVQLSK 718
>UNIPROTKB|F1N2P3 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9913 "Bos taurus" [GO:0071817 "MMXD
complex" evidence=IEA] [GO:0060218 "hematopoietic stem cell
differentiation" evidence=IEA] [GO:0048820 "hair follicle
maturation" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043588 "skin
development" evidence=IEA] [GO:0043388 "positive regulation of DNA
binding" evidence=IEA] [GO:0043249 "erythrocyte maturation"
evidence=IEA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0040016 "embryonic cleavage"
evidence=IEA] [GO:0035315 "hair cell differentiation" evidence=IEA]
[GO:0035264 "multicellular organism growth" evidence=IEA]
[GO:0033683 "nucleotide-excision repair, DNA incision"
evidence=IEA] [GO:0032289 "central nervous system myelin formation"
evidence=IEA] [GO:0030282 "bone mineralization" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0021510 "spinal cord development" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0009650 "UV protection" evidence=IEA] [GO:0008353
"RNA polymerase II carboxy-terminal domain kinase activity"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007568
"aging" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006979 "response to oxidative stress"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000075 "cell cycle
checkpoint" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737 GO:GO:0006915
GO:GO:0043066 GO:GO:0043588 GO:GO:0007059 GO:GO:0006979
GO:GO:0006917 GO:GO:0003677 GO:GO:0008283 GO:GO:0007568
GO:GO:0001701 GO:GO:0045944 GO:GO:0030198 GO:GO:0040016
GO:GO:0009791 GO:GO:0060218 GO:GO:0004003 GO:GO:0035264
GO:GO:0071817 GO:GO:0021510 GO:GO:0030282 GO:GO:0000075
GO:GO:0043388 GO:GO:0008353 GO:GO:0009650 GO:GO:0019907
GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0035315 GO:GO:0043139
GO:GO:0043249 OMA:KDVDGKC IPI:IPI00866827 GO:GO:0033683
GO:GO:0032289 GO:GO:0048820 GeneTree:ENSGT00550000075092
EMBL:DAAA02047375 Ensembl:ENSBTAT00000002680 Uniprot:F1N2P3
Length = 759
Score = 2154 (763.3 bits), Expect = 4.1e-223, P = 4.1e-223
Identities = 401/714 (56%), Positives = 529/714 (74%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P
Sbjct: 4 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYP 63
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++ V
Sbjct: 64 LEVTKLIYCSRTVPEIEKVIEELRKLLSFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPL 123
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG 184
VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL+A G
Sbjct: 124 RFGKDVDGKCHSLTASYVRAQYQRDSSLPHCRFYEEFDVHGRQVPLPTGIYNLDDLKAVG 183
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCI 244
++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI
Sbjct: 184 RRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCI 243
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL DA
Sbjct: 244 DSMSVNLTRRTLDRCQANLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARETDAH 303
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAH 364
L+NP LP ++LKEAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++ +
Sbjct: 304 LANPVLPDEVLKEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQR 363
Query: 365 AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDER 424
I +K LRFC ERL SL+ TLEI+D +F + + +FATLV TY +GF+IIIEPFD+R
Sbjct: 364 VCIQRKPLRFCAERLRSLLYTLEISDLTDFSPLTLLANFATLVSTYAKGFTIIIEPFDDR 423
Query: 425 MPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS 484
P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+
Sbjct: 424 TPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMT 483
Query: 485 LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSY 544
L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY Y
Sbjct: 484 LARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQY 543
Query: 545 MDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKV 604
M+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV
Sbjct: 544 MESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKV 603
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCV 664
+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLRD FQI+E DFLTFDA+R AAQCV
Sbjct: 604 SEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCV 663
Query: 665 GRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
GR IR K DYG+M+FADKR++R DKR KLP WI HL DA+LNL+ D + +A+
Sbjct: 664 GRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAK 717
>UNIPROTKB|P18074 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0021510 "spinal cord
development" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030282 "bone mineralization"
evidence=IEA] [GO:0032289 "central nervous system myelin formation"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0040016 "embryonic cleavage" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0043249 "erythrocyte maturation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043588 "skin development" evidence=IEA] [GO:0048820 "hair
follicle maturation" evidence=IEA] [GO:0060218 "hematopoietic stem
cell differentiation" evidence=IEA] [GO:0000441 "SSL2-core TFIIH
complex" evidence=IEA] [GO:0001666 "response to hypoxia"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0008283 "cell proliferation"
evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA;TAS] [GO:0006289 "nucleotide-excision repair"
evidence=IGI;NAS;TAS] [GO:0047485 "protein N-terminus binding"
evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006917 "induction of apoptosis" evidence=IMP] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IDA;TAS]
[GO:0005675 "holo TFIIH complex" evidence=IDA;TAS] [GO:0033683
"nucleotide-excision repair, DNA incision" evidence=IMP]
[GO:0004672 "protein kinase activity" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0043139 "5'-3' DNA helicase activity"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IDA;TAS] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019907 "cyclin-dependent
protein kinase activating kinase holoenzyme complex" evidence=IDA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0035315 "hair cell differentiation" evidence=IMP]
[GO:0000075 "cell cycle checkpoint" evidence=IMP] [GO:0006979
"response to oxidative stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007059
"chromosome segregation" evidence=IMP] [GO:0071817 "MMXD complex"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0008353 "RNA
polymerase II carboxy-terminal domain kinase activity"
evidence=IDA] [GO:0009650 "UV protection" evidence=IGI] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=TAS] [GO:0006361 "transcription initiation from
RNA polymerase I promoter" evidence=TAS] [GO:0006362 "transcription
elongation from RNA polymerase I promoter" evidence=TAS]
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=TAS] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=TAS] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=TAS]
[GO:0006370 "7-methylguanosine mRNA capping" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0050434 "positive regulation of
viral transcription" evidence=TAS] [GO:0006468 "protein
phosphorylation" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
Reactome:REACT_116125 GO:GO:0006915 GO:GO:0019048 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0016032 GO:GO:0006979
GO:GO:0006917 GO:GO:0046872 GO:GO:0003677 GO:GO:0008283
GO:GO:0007568 GO:GO:0001701 GO:GO:0001666 Reactome:REACT_1675
GO:GO:0045944 GO:GO:0030198 GO:GO:0006468 EMBL:CH471126
GO:GO:0040016 GO:GO:0051539 GO:GO:0009791 GO:GO:0060218
GO:GO:0004003 GO:GO:0035264 GO:GO:0006368 GO:GO:0071817
GO:GO:0021510 GO:GO:0030282 GO:GO:0006367 GO:GO:0000075
Reactome:REACT_1788 GO:GO:0043388 GO:GO:0009650 GO:GO:0005675
GO:GO:0006370 GO:GO:0000718 GO:GO:0050434 GO:GO:0006363
GO:GO:0006362 GO:GO:0006361 GO:GO:0006283 GO:GO:0008094
eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315 GO:GO:0043139
GO:GO:0043249 Orphanet:1466 HOGENOM:HOG000205390 KO:K10844
OMA:KDVDGKC CTD:2068 HOVERGEN:HBG051498 GO:GO:0033683 EMBL:X52221
EMBL:X52222 EMBL:L47234 EMBL:AY092780 EMBL:BT006883 EMBL:BC108255
EMBL:BC110523 IPI:IPI00029728 IPI:IPI00984321 PIR:S10888
RefSeq:NP_000391.1 RefSeq:NP_001124339.1 UniGene:Hs.487294
ProteinModelPortal:P18074 DIP:DIP-644N STRING:P18074
PhosphoSite:P18074 DMDM:119540 PaxDb:P18074 PRIDE:P18074 DNASU:2068
Ensembl:ENST00000391940 Ensembl:ENST00000391942
Ensembl:ENST00000391945 GeneID:2068 KEGG:hsa:2068 UCSC:uc002pbj.2
GeneCards:GC19M045854 HGNC:HGNC:3434 HPA:CAB005375 MIM:126340
MIM:278730 MIM:601675 MIM:610756 neXtProt:NX_P18074 Orphanet:231256
Orphanet:453 Orphanet:670 Orphanet:276258 Orphanet:220295
PharmGKB:PA27848 InParanoid:P18074 OrthoDB:EOG4BVRT2
PhylomeDB:P18074 ChiTaRS:ERCC2 GenomeRNAi:2068 NextBio:8409
ArrayExpress:P18074 Bgee:P18074 CleanEx:HS_ERCC2
Genevestigator:P18074 GermOnline:ENSG00000104884 GO:GO:0000441
GO:GO:0032289 GO:GO:0048820 Uniprot:P18074
Length = 760
Score = 2152 (762.6 bits), Expect = 6.7e-223, P = 6.7e-223
Identities = 402/718 (55%), Positives = 529/718 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA + ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA 660
RGKV+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLRD FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
AQCVGR IR K DYG+M+FADKR++R DKR KLP WI HL DA+LNL+ D + +A+
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAK 718
>RGD|1309109 [details] [associations]
symbol:Ercc2 "excision repair cross-complementing rodent repair
deficiency, complementation group 2" species:10116 "Rattus
norvegicus" [GO:0000075 "cell cycle checkpoint" evidence=IEA;ISO]
[GO:0000441 "SSL2-core TFIIH complex" evidence=IDA] [GO:0001666
"response to hypoxia" evidence=IEP] [GO:0001701 "in utero embryonic
development" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005819 "spindle" evidence=ISO]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IEA;ISO] [GO:0006289 "nucleotide-excision repair"
evidence=ISO] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006917 "induction of apoptosis" evidence=IEA;ISO] [GO:0006979
"response to oxidative stress" evidence=IEA;ISO] [GO:0007059
"chromosome segregation" evidence=IEA;ISO] [GO:0007568 "aging"
evidence=IEA;ISO] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008283 "cell proliferation"
evidence=IEA;ISO] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=IEA;ISO] [GO:0009411 "response to
UV" evidence=ISO] [GO:0009650 "UV protection" evidence=IEA;ISO]
[GO:0009791 "post-embryonic development" evidence=IEA;ISO]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0021510 "spinal cord
development" evidence=IEA;ISO] [GO:0022405 "hair cycle process"
evidence=ISO] [GO:0030198 "extracellular matrix organization"
evidence=IEA;ISO] [GO:0030282 "bone mineralization"
evidence=IEA;ISO] [GO:0032289 "central nervous system myelin
formation" evidence=IEA;ISO] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=IEA;ISO] [GO:0035264 "multicellular
organism growth" evidence=IEA;ISO] [GO:0035315 "hair cell
differentiation" evidence=IEA;ISO] [GO:0040016 "embryonic cleavage"
evidence=IEA;ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA;ISO] [GO:0043139 "5'-3' DNA helicase
activity" evidence=IEA;ISO] [GO:0043249 "erythrocyte maturation"
evidence=IEA;ISO] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA;ISO] [GO:0043588 "skin development" evidence=IEA;ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0047485
"protein N-terminus binding" evidence=IEA;ISO] [GO:0048820 "hair
follicle maturation" evidence=IEA;ISO] [GO:0060218 "hematopoietic
stem cell differentiation" evidence=IEA;ISO] [GO:0071817 "MMXD
complex" evidence=IEA;ISO] [GO:0004672 "protein kinase activity"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 RGD:1309109 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005737 GO:GO:0006915 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0006979 GO:GO:0006917
GO:GO:0003677 GO:GO:0008283 GO:GO:0007568 GO:GO:0001701
GO:GO:0001666 GO:GO:0045944 GO:GO:0030198 GO:GO:0040016
GO:GO:0009791 GO:GO:0060218 GO:GO:0004003 GO:GO:0035264
GO:GO:0071817 GO:GO:0021510 GO:GO:0030282 GO:GO:0000075
EMBL:CH473979 GO:GO:0043388 GO:GO:0008353 GO:GO:0009650
GO:GO:0019907 GO:GO:0006283 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 GO:GO:0043249 KO:K10844 CTD:2068 GO:GO:0033683
OrthoDB:EOG4BVRT2 GO:GO:0000441 GO:GO:0032289 GO:GO:0048820
GeneTree:ENSGT00550000075092 IPI:IPI00367025 RefSeq:NP_001166280.1
UniGene:Rn.41871 Ensembl:ENSRNOT00000024246 GeneID:308415
KEGG:rno:308415 NextBio:658821 Uniprot:D3ZEG9
Length = 760
Score = 2147 (760.8 bits), Expect = 2.3e-222, P = 2.3e-222
Identities = 400/718 (55%), Positives = 530/718 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDTHGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTITNPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA 660
RGKV+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLRD FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
AQCVGR IR K DYG+M+FADKR++R DKR KLP WI HL D++LNL+ D + +A+
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAK 718
>UNIPROTKB|Q60452 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:10029 "Cricetulus griseus"
[GO:0000075 "cell cycle checkpoint" evidence=ISS] [GO:0005675 "holo
TFIIH complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005819 "spindle" evidence=ISS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006468 "protein phosphorylation" evidence=ISS]
[GO:0006917 "induction of apoptosis" evidence=ISS] [GO:0006979
"response to oxidative stress" evidence=ISS] [GO:0007059
"chromosome segregation" evidence=ISS] [GO:0008022 "protein
C-terminus binding" evidence=ISS] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=ISS] [GO:0035315 "hair cell
differentiation" evidence=ISS] [GO:0043139 "5'-3' DNA helicase
activity" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0047485 "protein N-terminus binding"
evidence=ISS] [GO:0071817 "MMXD complex" evidence=ISS] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISS] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737 GO:GO:0007059
GO:GO:0006979 GO:GO:0006917 GO:GO:0046872 GO:GO:0003677
GO:GO:0045944 GO:GO:0006468 GO:GO:0051539 GO:GO:0006366
GO:GO:0004003 GO:GO:0071817 GO:GO:0008022 GO:GO:0047485
GO:GO:0000075 GO:GO:0005675 GO:GO:0006283 TIGRFAMs:TIGR00604
GO:GO:0035315 GO:GO:0043139 CTD:2068 HOVERGEN:HBG051498
GO:GO:0033683 EMBL:U04968 EMBL:U04967 PIR:A55732
RefSeq:NP_001231320.1 GeneID:100689272 Uniprot:Q60452
Length = 760
Score = 2146 (760.5 bits), Expect = 2.9e-222, P = 2.9e-222
Identities = 400/718 (55%), Positives = 530/718 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++
Sbjct: 61 RAFPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDAHGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA 660
RGKV+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLRD FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
AQCVGR IR K DYG+M+FADKR++R DKR KLP WI HL D++LNL+ D + +A+
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAK 718
>MGI|MGI:95413 [details] [associations]
symbol:Ercc2 "excision repair cross-complementing rodent
repair deficiency, complementation group 2" species:10090 "Mus
musculus" [GO:0000075 "cell cycle checkpoint" evidence=ISO]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001701 "in
utero embryonic development" evidence=IMP] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005819 "spindle" evidence=ISO]
[GO:0005856 "cytoskeleton" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISO]
[GO:0006289 "nucleotide-excision repair" evidence=ISO;IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0006915 "apoptotic process" evidence=IMP]
[GO:0006917 "induction of apoptosis" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0006979
"response to oxidative stress" evidence=ISO;IMP] [GO:0007059
"chromosome segregation" evidence=ISO] [GO:0007568 "aging"
evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0009411 "response to UV" evidence=IMP] [GO:0009650 "UV
protection" evidence=ISO;IMP] [GO:0009791 "post-embryonic
development" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0021510 "spinal cord development" evidence=IMP]
[GO:0022405 "hair cycle process" evidence=IMP] [GO:0030198
"extracellular matrix organization" evidence=IMP] [GO:0030282 "bone
mineralization" evidence=IMP] [GO:0032289 "central nervous system
myelin formation" evidence=IMP] [GO:0033683 "nucleotide-excision
repair, DNA incision" evidence=ISO] [GO:0035264 "multicellular
organism growth" evidence=IMP] [GO:0035315 "hair cell
differentiation" evidence=ISO;IMP] [GO:0040016 "embryonic cleavage"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043139 "5'-3' DNA helicase activity"
evidence=ISO] [GO:0043249 "erythrocyte maturation" evidence=IMP]
[GO:0043388 "positive regulation of DNA binding" evidence=IMP]
[GO:0043588 "skin development" evidence=IMP] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=ISO] [GO:0048820 "hair follicle maturation" evidence=IMP]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0060218
"hematopoietic stem cell differentiation" evidence=IMP] [GO:0071817
"MMXD complex" evidence=ISO] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 MGI:MGI:95413 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005737 GO:GO:0006915 GO:GO:0043066
GO:GO:0043588 GO:GO:0007059 GO:GO:0006979 GO:GO:0006917
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0007568
GO:GO:0001701 GO:GO:0001666 GO:GO:0045944 GO:GO:0030198
GO:GO:0040016 GO:GO:0051539 GO:GO:0006366 GO:GO:0009791
GO:GO:0060218 GO:GO:0004003 GO:GO:0035264 GO:GO:0071817
GO:GO:0021510 GO:GO:0030282 GO:GO:0000075 GO:GO:0043388
GO:GO:0008353 GO:GO:0009650 GO:GO:0005675 GO:GO:0019907
GO:GO:0006283 eggNOG:COG1199 TIGRFAMs:TIGR00604 GO:GO:0035315
GO:GO:0043139 GO:GO:0043249 EMBL:CH466639 HOGENOM:HOG000205390
KO:K10844 OMA:KDVDGKC CTD:2068 HOVERGEN:HBG051498 GO:GO:0033683
OrthoDB:EOG4BVRT2 GO:GO:0000441 GO:GO:0032289 GO:GO:0048820
EMBL:U97572 EMBL:AK004652 EMBL:AK082761 IPI:IPI00310721
RefSeq:NP_031975.2 UniGene:Mm.36524 ProteinModelPortal:O08811
SMR:O08811 STRING:O08811 PhosphoSite:O08811 PaxDb:O08811
PRIDE:O08811 Ensembl:ENSMUST00000062831 GeneID:13871 KEGG:mmu:13871
GeneTree:ENSGT00550000075092 InParanoid:Q8C487 NextBio:284788
Bgee:O08811 Genevestigator:O08811 GermOnline:ENSMUSG00000030400
Uniprot:O08811
Length = 760
Score = 2144 (759.8 bits), Expect = 4.7e-222, P = 4.7e-222
Identities = 401/718 (55%), Positives = 530/718 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L ++ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPHCRFYEEFDIHGRQMPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +PVL SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA 660
RGKV+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLRD FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
AQCVGR IR K DYG+M+FADKR++R DKR KLP WI HL D++LNL+ D + +A+
Sbjct: 661 AQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAK 718
>FB|FBgn0261850 [details] [associations]
symbol:Xpd "Xeroderma pigmentosum D" species:7227 "Drosophila
melanogaster" [GO:0006289 "nucleotide-excision repair"
evidence=ISS;IDA] [GO:0001113 "transcriptional open complex
formation at RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=ISS;IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=ISS] [GO:0009411 "response to UV" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0000439 "core TFIIH complex"
evidence=ISS;IDA] [GO:0001111 "promoter clearance from RNA
polymerase II promoter" evidence=ISS] [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0007088
"regulation of mitosis" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 EMBL:AE013599
GO:GO:0005524 GO:GO:0005737 GO:GO:0007088 GO:GO:0009411
GO:GO:0003677 GO:GO:0006367 GO:GO:0006289 GO:GO:0051983
GO:GO:0005675 GO:GO:0005703 GO:GO:0010972 GO:GO:0005705
TIGRFAMs:TIGR00604 KO:K10844 OMA:KDVDGKC GO:GO:0043141
GeneTree:ENSGT00550000075092 GO:GO:0000439 FlyBase:FBgn0261850
RefSeq:NP_726036.2 UniGene:Dm.718 ProteinModelPortal:Q7KVP9
STRING:Q7KVP9 PRIDE:Q7KVP9 EnsemblMetazoa:FBtr0071576 GeneID:37414
KEGG:dme:Dmel_CG9433 UCSC:CG9433-RA CTD:37414 InParanoid:Q7KVP9
OrthoDB:EOG4FTTFK PhylomeDB:Q7KVP9 GenomeRNAi:37414 NextBio:803510
ArrayExpress:Q7KVP9 Bgee:Q7KVP9 Uniprot:Q7KVP9
Length = 769
Score = 2130 (754.9 bits), Expect = 1.4e-220, P = 1.4e-220
Identities = 392/718 (54%), Positives = 525/718 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPY+ IYPEQY+YMLELKR+LDAKGHCLLEMP+GTGKT LLSLI +Y+
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE KLIYC+RTV E+EK +AEL+ L Y RH + LSSRKN+C++
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +VD C TAS++R + C++FE + + LP GVY++ DL
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+ +G+ + WCPYFLAR+ + A++VVYSY YLLDPK+A ++SKEM +ES VVFDEAHNID
Sbjct: 181 KEYGRSRNWCPYFLARYAIAHAHIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV + R+T+E +T L+ + + ++ + D RL EY R+V+GL
Sbjct: 241 NVCIDSMSVKINRRTVERSTNALNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRD 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D L+NP LP+D+L E VPGNIR A+HFL LRR ++Y++ RL +V +E P F+
Sbjct: 301 TDMILANPVLPNDVLTEVVPGNIRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKD 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
I++ I++K LRFC ERL SL+ TLEI+D E+ + I FATLV TYT+GF+IIIEP
Sbjct: 361 ISSKICIERKPLRFCAERLSSLLRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD++ P + +P+L SC D+S+A+ PVF RFQ+VVITSGTLSP+D+YP++L+F PVV S
Sbjct: 421 FDDKTPTVSNPILHFSCLDSSIAMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSS 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+ PM++++G+DQ+ +S+KF+ R D V RNYG+LLVE+ VPDGIVCFF
Sbjct: 481 FTMTLARPCLLPMIVSKGNDQVTISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ ++A+W D GI+ ++++KL+FIETQD ET+ AL NY KACDCGRGAV +VA
Sbjct: 541 SYLYLESVVASWYDQGIVDTLLRYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA 660
RGKV+EG+DFD HYGR V+MFG+P+ YT S+IL ARL+YLRD FQI+E DFLTFDA+R A
Sbjct: 601 RGKVSEGVDFDHHYGRAVLMFGIPYVYTQSRILKARLDYLRDQFQIRENDFLTFDAMRHA 660
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
AQCVGR +R K DYG+MIFADKR+SRHDKRS+LP WI HL D+ NLST+ A+ +AR
Sbjct: 661 AQCVGRALRGKTDYGIMIFADKRFSRHDKRSRLPKWIQEHLVDSFCNLSTEEAVQLAR 718
>UNIPROTKB|F1PMH9 [details] [associations]
symbol:ERCC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 GO:GO:0006289 TIGRFAMs:TIGR00604
OMA:KDVDGKC GeneTree:ENSGT00550000075092 EMBL:AAEX03000876
Ensembl:ENSCAFT00000007249 Uniprot:F1PMH9
Length = 771
Score = 2129 (754.5 bits), Expect = 1.8e-220, P = 1.8e-220
Identities = 398/714 (55%), Positives = 527/714 (73%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP 64
++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P
Sbjct: 17 VDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYP 76
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++ V+
Sbjct: 77 LEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVMPL 136
Query: 125 ENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG 184
VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL+A G
Sbjct: 137 RFGKDVDGKCHSLTASYVRAQYQQDSSLPHCRFYEEFDVHGRQVPLPAGIYNLDDLKALG 196
Query: 185 KQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCI 244
++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI
Sbjct: 197 QRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNIDNVCI 256
Query: 245 EALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAW 304
+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL DA
Sbjct: 257 DSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARETDAH 316
Query: 305 LSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAH 364
L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++ +
Sbjct: 317 LANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQR 376
Query: 365 AGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDER 424
I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEPFD+R
Sbjct: 377 VCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDR 436
Query: 425 MPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS 484
P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+
Sbjct: 437 TPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMT 496
Query: 485 LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSY 544
L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY Y
Sbjct: 497 LARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQY 556
Query: 545 MDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKV 604
M+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV
Sbjct: 557 MESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKV 616
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCV 664
+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLRD FQI+ DFLT DA+R AAQCV
Sbjct: 617 SEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRN-DFLTLDAMRHAAQCV 675
Query: 665 GRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
G IR K DYG+M+FADKR++R DKR KLP WI HL DA+LNL+ D + +A+
Sbjct: 676 GGAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDANLNLTVDEGVQVAK 729
>DICTYBASE|DDB_G0267414 [details] [associations]
symbol:repD "transcription factor IIH component"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IEA;IEP] [GO:0043141 "ATP-dependent
5'-3' DNA helicase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=IEA;ISS]
[GO:0005675 "holo TFIIH complex" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0000287 "magnesium ion binding"
evidence=ISS] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000443 "SSL2-core TFIIH complex portion
of holo TFIIH complex" evidence=ISS] [GO:0000442 "SSL2-core TFIIH
complex portion of NEF3 complex" evidence=ISS] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0051536 "iron-sulfur
cluster binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 dictyBase:DDB_G0267414
INTERPRO:IPR013020 GO:GO:0005524 GenomeReviews:CM000150_GR
GO:GO:0006355 GO:GO:0000287 GO:GO:0003677 EMBL:AAFI02000003
GO:GO:0051539 GO:GO:0006366 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K10844 OMA:KDVDGKC EMBL:U77066
RefSeq:XP_647302.1 ProteinModelPortal:Q55G81 STRING:Q55G81
EnsemblProtists:DDB0191272 GeneID:8616111 KEGG:ddi:DDB_G0267414
ProtClustDB:CLSZ2431526 GO:GO:0000443 GO:GO:0000442 GO:GO:0043141
Uniprot:Q55G81
Length = 776
Score = 2128 (754.2 bits), Expect = 2.3e-220, P = 2.3e-220
Identities = 401/721 (55%), Positives = 536/721 (74%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F +ED+ VYFPY IYPEQYSYM+ LKR+LD G C+LEMP+GTGKT++LLSLI+SY
Sbjct: 1 MKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAA-KILAIGLSSRKNLCVNS 119
+ P +KLIYC+RTV E+E+ E + + Y+ +G + K L + +SSR+NLC+
Sbjct: 61 VKNPS--IKLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESPKTLCMSMSSRRNLCIQP 118
Query: 120 RVLAAENRDS--VDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTL 177
RV +E RD VDA CR+ T+SW R E+P E C+FFEN+E +L GVY+L
Sbjct: 119 RV--SEERDGKVVDALCRELTSSWNR----ESPTSEKCKFFENFESNGKEILLE-GVYSL 171
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+DL+ +G + CPYFL+RHM+ FAN+V++SYQYLLDPK+A +IS S+VVFDEAH
Sbjct: 172 EDLKEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAH 231
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
NIDNVCI ALS+++ + L+ +++N+++IN++IE K D RL+ EY RLV GLA G+
Sbjct: 232 NIDNVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGS 291
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
AD S+P LP+D+++EAVPGNIR+AEHF+ +LRR+V YL+ RL+++ + E P++F
Sbjct: 292 TR-ADETTSDPVLPNDVIQEAVPGNIRKAEHFISLLRRVVDYLKSRLKSQMLLSESPLAF 350
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + I +TLRFC RL SL+ TL I D ++F I I DFATLVGTY GF II
Sbjct: 351 LQGLYHATQISSRTLRFCSSRLSSLLRTLRINDVNQFSGISLIADFATLVGTYNNGFLII 410
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP+ +R + D + Q C DAS+ +KP+FD+++SVVITSGTLSP+D+Y ++LNF P V
Sbjct: 411 IEPYYQRQNNTYDQIFQFCCLDASIGMKPIFDKYRSVVITSGTLSPLDIYTKMLNFRPTV 470
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
MSL R+CICP +LTRGSDQ+ +STKFD+RSD V RNYG LLVE+ +IVPDGI+C
Sbjct: 471 VERLTMSLNRNCICPCILTRGSDQISISTKFDVRSDTAVVRNYGALLVEVSAIVPDGIIC 530
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SYSYM++I++ WN+ G+L I+ +KL+F+ET D E+ LAL NY+KACD GRGAV
Sbjct: 531 FFTSYSYMEQIVSVWNEMGLLNNILTNKLIFVETSDPAESALALQNYKKACDSGRGAVLL 590
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDAL 657
SVARGKV+EGIDFD YGR VI++G+P+ T SK+L ARLE+LRD +QI+E +FLTFDA+
Sbjct: 591 SVARGKVSEGIDFDNQYGRCVILYGIPYINTESKVLRARLEFLRDRYQIRENEFLTFDAM 650
Query: 658 RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIA 717
R A+QCVGRVIR K+DYG+MIFADKRY+R DKR+KLP WIL + HLNLSTDMA+ ++
Sbjct: 651 RTASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKLPQWILQFCQPQHLNLSTDMAISLS 710
Query: 718 R 718
+
Sbjct: 711 K 711
>UNIPROTKB|A8MX75 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 GO:GO:0006289
TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 HOVERGEN:HBG051498
EMBL:L47234 HGNC:HGNC:3434 ChiTaRS:ERCC2 IPI:IPI00442420
ProteinModelPortal:A8MX75 STRING:A8MX75 PRIDE:A8MX75
Ensembl:ENST00000391941 ArrayExpress:A8MX75 Bgee:A8MX75
Uniprot:A8MX75
Length = 706
Score = 2071 (734.1 bits), Expect = 2.6e-214, P = 2.6e-214
Identities = 388/694 (55%), Positives = 511/694 (73%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK +
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
EL+ L N+ + G L + LSSRKNLC++ V VD C TAS+VRA
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ ++ C F+E ++ LP G+Y L DL+A G++QGWCPYFLAR+ + ANV
Sbjct: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+ NL
Sbjct: 181 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIR 324
+ + + R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG+IR
Sbjct: 241 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPGSIR 300
Query: 325 RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLML 384
AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL SL+
Sbjct: 301 TAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRSLLH 360
Query: 385 TLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAV 444
TLEITD +F + + +FATLV TY +GF+IIIEPFD+R P I +P+L SC DASLA+
Sbjct: 361 TLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDASLAI 420
Query: 445 KPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPV 504
KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ+ +
Sbjct: 421 KPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQVAI 480
Query: 505 STKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQH 564
S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I ++
Sbjct: 481 SSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENIQRN 540
Query: 565 KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EGIDF HYGR VIMFGVP
Sbjct: 541 KLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMFGVP 600
Query: 625 FQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRY 684
+ YT S+IL ARLEYLRD FQI+E DFLTFDA+R AAQCVGR IR K DYG+M+FADKR+
Sbjct: 601 YVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFADKRF 660
Query: 685 SRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
+R DKR KLP WI HL DA+LNL+ D + +A+
Sbjct: 661 ARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAK 694
>POMBASE|SPAC1D4.12 [details] [associations]
symbol:rad15 "transcription factor TFIIH complex subunit
Rad15" species:4896 "Schizosaccharomyces pombe" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IGI]
[GO:0000439 "core TFIIH complex" evidence=ISO] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=IGI]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005675 "holo TFIIH complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006367 "transcription
initiation from RNA polymerase II promoter" evidence=ISO]
[GO:0043141 "ATP-dependent 5'-3' DNA helicase activity"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
PomBase:SPAC1D4.12 INTERPRO:IPR013020 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0006367 GO:GO:0000991 GO:GO:0005675
eggNOG:COG1199 TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 KO:K10844
OMA:KDVDGKC GO:GO:0043141 GO:GO:0000717 GO:GO:0000439 GO:GO:0000112
EMBL:X64583 EMBL:X60499 PIR:S22660 RefSeq:NP_593025.1
ProteinModelPortal:P26659 IntAct:P26659 STRING:P26659
EnsemblFungi:SPAC1D4.12.1 GeneID:2542203 KEGG:spo:SPAC1D4.12
OrthoDB:EOG4G1QQH NextBio:20803273 Uniprot:P26659
Length = 772
Score = 2030 (719.7 bits), Expect = 5.7e-210, P = 5.7e-210
Identities = 380/719 (52%), Positives = 520/719 (72%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ + FPY IYPEQY YM +LK +LDA G LLEMP+GTGKTI+LLSLI SY
Sbjct: 1 MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E++K LAELK L Y+T LG L +GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V +N + VDA CR TA +VR ++ TCEF +N E +++ GV+TL D+
Sbjct: 120 VRREKNGNVVDARCRSLTAGFVREQRLAGMDVPTCEFHDNLEDLEPHSLISNGVWTLDDI 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G++ CPYF R M+ F NV++YSY YLLDPK+A +S+E+ K+ +VVFDEAHNID
Sbjct: 180 TEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L A++++ + Q++ K +D+ +L+ EY +LV GL
Sbjct: 240 NVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAAND 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D +++NP LP D+LKEAVPGNIRRAEHF+ L+R V+YL+ R++ +V E P SF+
Sbjct: 300 EDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSFLQH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ ID+K LRFC ERL SL+ L+I+ ++F +Q + FATLV TY RGF +I+EP
Sbjct: 360 VKDITFIDKKPLRFCAERLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGFILILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+P+L+ SC DAS+A+KPVF+RF+SV+ITSGTLSP+D+YP++L F+ V+ S
Sbjct: 420 FETENATVPNPILRFSCLDASIAIKPVFERFRSVIITSGTLSPLDMYPKMLQFNTVMQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ MSL R+C PMV+TRGSDQ+ +S+KF+ R+DP V RNYG +LVE I PDG+V FF
Sbjct: 480 YGMSLARNCFLPMVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVAFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY Y++ I+++W GIL E+ ++KL+ +ET D ETTLAL+ YR AC GRGAV SVA
Sbjct: 540 SYLYLESIVSSWQSMGILDEVWKYKLILVETPDPHETTLALETYRAACSNGRGAVLLSVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA 660
RGKV+EG+DFD HYGR VIMFG+P+QYT S++L ARLE+LRDT+QI+E DFLTFDA+R A
Sbjct: 600 RGKVSEGVDFDHHYGRAVIMFGIPYQYTESRVLKARLEFLRDTYQIREADFLTFDAMRHA 659
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIARE 719
AQC+GRV+R K D+G+M+ ADKRY R DKR+KLP WI ++ + NLSTDM+L +A++
Sbjct: 660 AQCLGRVLRGKDDHGIMVLADKRYGRSDKRTKLPKWIQQYITEGATNLSTDMSLALAKK 718
>UNIPROTKB|E7EVE9 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604 EMBL:L47234
HGNC:HGNC:3434 ChiTaRS:ERCC2 IPI:IPI00745781
ProteinModelPortal:E7EVE9 Ensembl:ENST00000391944 UCSC:uc010ejz.2
ArrayExpress:E7EVE9 Bgee:E7EVE9 Uniprot:E7EVE9
Length = 682
Score = 1642 (583.1 bits), Expect = 6.3e-203, Sum P(2) = 6.3e-203
Identities = 305/517 (58%), Positives = 399/517 (77%)
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+
Sbjct: 124 ANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQG 183
Query: 262 NLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPG 321
NL + + + R K TD RLR EY RLVEGL DA L+NP LP ++L+EAVPG
Sbjct: 184 NLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPG 243
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHS 381
+IR AEHFL LRRL++Y++ RL ++V +E P +F++ + I +K LRFC ERL S
Sbjct: 244 SIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRS 303
Query: 382 LMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDAS 441
L+ TLEITD +F + + +FATLV TY +GF+IIIEPFD+R P I +P+L SC DAS
Sbjct: 304 LLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDAS 363
Query: 442 LAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQ 501
LA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F M+L R C+CPM++ RG+DQ
Sbjct: 364 LAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQ 423
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEI 561
+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+ +A+W + GIL+ I
Sbjct: 424 VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENI 483
Query: 562 MQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMF 621
++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVARGKV+EGIDF HYGR VIMF
Sbjct: 484 QRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMF 543
Query: 622 GVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681
GVP+ YT S+IL ARLEYLRD FQI+E DFLTFDA+R AAQCVGR IR K DYG+M+FAD
Sbjct: 544 GVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFAD 603
Query: 682 KRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
KR++R DKR KLP WI HL DA+LNL+ D + +A+
Sbjct: 604 KRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAK 640
Score = 344 (126.2 bits), Expect = 6.3e-203, Sum P(2) = 6.3e-203
Identities = 67/124 (54%), Positives = 88/124 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAA 124
+L A
Sbjct: 121 ILHA 124
>ASPGD|ASPL0000055138 [details] [associations]
symbol:AN9436 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0010525 "regulation of
transposition, RNA-mediated" evidence=IEA] [GO:0000019 "regulation
of mitotic recombination" evidence=IEA] [GO:0070816
"phosphorylation of RNA polymerase II C-terminal domain"
evidence=IEA] [GO:0000717 "nucleotide-excision repair, DNA duplex
unwinding" evidence=IEA] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IEA] [GO:0005675 "holo TFIIH complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] InterPro:IPR001945
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
EMBL:BN001308 GO:GO:0003677 GO:GO:0004003 GO:GO:0006289
TIGRFAMs:TIGR00604 OMA:KDVDGKC EnsemblFungi:CADANIAT00001938
Uniprot:C8VRA9
Length = 791
Score = 1949 (691.1 bits), Expect = 2.2e-201, P = 2.2e-201
Identities = 367/718 (51%), Positives = 508/718 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM +LK+ LDA GHC+LEMP+GTGKT+ LLSLI +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYAYMCDLKKTLDAGGHCVLEMPSGTGKTVTLLSLIVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
PE+ KLIYC+RT+ E+EK LAEL+ L +++ LG A+GL+SRKNLC++
Sbjct: 61 QHYPEHR-KLIYCSRTMSEIEKALAELRELMKFRSEQLGYTEDFRALGLTSRKNLCLHPS 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V ++ VDA CR TA +V+ + ++E C + EN + ++PPGV+TL L
Sbjct: 120 VKREKSGTVVDARCRSLTAGFVKEKKEKGEDVELCVYHENLDLLEPHNLVPPGVFTLDGL 179
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+G+Q CPYF AR M+ + NV++YSY YLLDPK+A +SKE K+ +VVFDEAHNID
Sbjct: 180 LNYGEQHKQCPYFSARRMMPYCNVIIYSYHYLLDPKIAERVSKEFSKDCIVVFDEAHNID 239
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCIE+LS+ + +L ATR + + ++I+ K++DA +L EY +LVEGL
Sbjct: 240 NVCIESLSIDITEDSLRKATRGANNLERKIQDVKSSDAEKLNNEYMKLVEGLREAEQARD 299
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
D ++SNP LP D+LKEAVPGNIRRAEHF+ L+R ++YL+ R++ + E P+SF+
Sbjct: 300 EDQFISNPVLPDDLLKEAVPGNIRRAEHFVAFLKRFIEYLKTRMKVTHTISETPLSFLNH 359
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I++K LRFC ERL SL+ TLE+ + +++ +Q + FATLV TY +GF +I+EP
Sbjct: 360 VKELTFIERKPLRFCAERLTSLVRTLELINIEDYQPLQEVATFATLVSTYDKGFLLILEP 419
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
F+ +P+PVL +C DA++A+KPVFDRF SVVITSGTLSP+++YP++L F V+ S
Sbjct: 420 FESEAATVPNPVLHFTCLDAAIAIKPVFDRFSSVVITSGTLSPLEMYPKMLGFTTVMQES 479
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
+ M+L R PM++TRGSDQ +S+ F +R+DPGV RNYG +++E I PDG+V FF
Sbjct: 480 YSMTLARRSFLPMIVTRGSDQAQISSSFQIRNDPGVVRNYGNIVLEFSRITPDGVVVFFP 539
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ II+ W GIL I +KL+ +ET D E++LAL+ YR AC GRGA+ F VA
Sbjct: 540 SYLYMESIISMWQGMGILDSIWNYKLILVETPDAQESSLALETYRTACCNGRGALLFCVA 599
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA 660
RGKV+EGIDFD HYGR V+ GVPFQYT S+IL ARLE+LR+ ++I+E DFL+FDA+R A
Sbjct: 600 RGKVSEGIDFDHHYGRAVLCIGVPFQYTESRILKARLEFLRENYRIRENDFLSFDAMRHA 659
Query: 661 AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
AQC+GRV+R K DYG+M+ AD+R+ + KR++LP WI L ++ NLSTDMA+ A+
Sbjct: 660 AQCLGRVLRGKDDYGIMVLADRRFQK--KRNQLPKWISQALLESETNLSTDMAVATAK 715
>CGD|CAL0002854 [details] [associations]
symbol:RAD3 species:5476 "Candida albicans" [GO:0003678 "DNA
helicase activity" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000439 "core
TFIIH complex" evidence=IEA] [GO:0000112 "nucleotide-excision
repair factor 3 complex" evidence=IEA] [GO:0003684 "damaged DNA
binding" evidence=IEA] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=IEA] [GO:0010525 "regulation of
transposition, RNA-mediated" evidence=IEA] [GO:0000019 "regulation
of mitotic recombination" evidence=IEA] [GO:0070816
"phosphorylation of RNA polymerase II C-terminal domain"
evidence=IEA] [GO:0000717 "nucleotide-excision repair, DNA duplex
unwinding" evidence=IEA] [GO:0033683 "nucleotide-excision repair,
DNA incision" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
CGD:CAL0002854 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 EMBL:AACQ01000024 GO:GO:0003678
GO:GO:0006289 eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K10844
RefSeq:XP_720409.1 RefSeq:XP_888639.1 ProteinModelPortal:Q5AFE9
STRING:Q5AFE9 GeneID:3638014 GeneID:3704106 KEGG:cal:CaO19.7119
KEGG:cal:CaO19_7119 Uniprot:Q5AFE9
Length = 765
Score = 1928 (683.7 bits), Expect = 3.6e-199, P = 3.6e-199
Identities = 357/721 (49%), Positives = 506/721 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQYSYM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L ++ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAEN-PNIET-CEFFENYEKAASAAVLPPGVYTLQ 178
+ VD CR+ T ++ + P ++ C F E ++PPGVY+
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFD 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + K++G CPYF R M+ F N+++YSY YLLDPK+A +S+E+ K+S+V+FDEAHN
Sbjct: 180 ALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + +TL+ A+R +++ + IE KA D+ +L+ EY +LVEGL
Sbjct: 240 IDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIA 299
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
+ +++NP LP D+L EA+PGNIR+ EHF+ L+R ++YL+ R++ +V E P SF+
Sbjct: 300 RDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 359
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
+ I++K LRFC ERL L+ TLE+T+ D+F ++ I FATLV TY GF +I+
Sbjct: 360 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLIL 419
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EP++ +P+P+L +C DAS+A+KPVFDRF SV+ITSGT+SP+D+YP++L F V+
Sbjct: 420 EPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQ 479
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
S+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LL+E I PDG+V F
Sbjct: 480 ESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVF 539
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
F SY YM+ II+ W G+L E+ +HKL+ +ET D ET+LAL+ YRKAC GRGAV S
Sbjct: 540 FPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLS 599
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALR 658
VARGKV+EGIDFD HYGR V+M G+PFQYT S+IL ARLE++RD FQIKE DFL+FDA+R
Sbjct: 600 VARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMR 659
Query: 659 QAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
AAQC+GRV+R K DYG+M+ AD+R++R K+++LP WI L D+ NLSTDMAL A+
Sbjct: 660 HAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAK 717
Query: 719 E 719
+
Sbjct: 718 K 718
>UNIPROTKB|Q5AFE9 [details] [associations]
symbol:RAD3 "Putative uncharacterized protein RAD3"
species:237561 "Candida albicans SC5314" [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001945 InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR010643 InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777
Pfam:PF13307 PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 CGD:CAL0002854 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
EMBL:AACQ01000024 GO:GO:0003678 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K10844 RefSeq:XP_720409.1 RefSeq:XP_888639.1
ProteinModelPortal:Q5AFE9 STRING:Q5AFE9 GeneID:3638014
GeneID:3704106 KEGG:cal:CaO19.7119 KEGG:cal:CaO19_7119
Uniprot:Q5AFE9
Length = 765
Score = 1928 (683.7 bits), Expect = 3.6e-199, P = 3.6e-199
Identities = 357/721 (49%), Positives = 506/721 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQYSYM ++K+ LD G+C+LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K++YC+RT+ E+EK L EL L ++ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAEN-PNIET-CEFFENYEKAASAAVLPPGVYTLQ 178
+ VD CR+ T ++ + P ++ C F E ++PPGVY+
Sbjct: 120 ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFD 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + K++G CPYF R M+ F N+++YSY YLLDPK+A +S+E+ K+S+V+FDEAHN
Sbjct: 180 ALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + +TL+ A+R +++ + IE KA D+ +L+ EY +LVEGL
Sbjct: 240 IDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIA 299
Query: 299 PIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFV 358
+ +++NP LP D+L EA+PGNIR+ EHF+ L+R ++YL+ R++ +V E P SF+
Sbjct: 300 RDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 359
Query: 359 ASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIII 418
+ I++K LRFC ERL L+ TLE+T+ D+F ++ I FATLV TY GF +I+
Sbjct: 360 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLIL 419
Query: 419 EPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS 478
EP++ +P+P+L +C DAS+A+KPVFDRF SV+ITSGT+SP+D+YP++L F V+
Sbjct: 420 EPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQ 479
Query: 479 RSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCF 538
S+ M+L R PM++T+GSDQ+ +S++F++R+DP V RNYG LL+E I PDG+V F
Sbjct: 480 ESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVF 539
Query: 539 FVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFS 598
F SY YM+ II+ W G+L E+ +HKL+ +ET D ET+LAL+ YRKAC GRGAV S
Sbjct: 540 FPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLS 599
Query: 599 VARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALR 658
VARGKV+EGIDFD HYGR V+M G+PFQYT S+IL ARLE++RD FQIKE DFL+FDA+R
Sbjct: 600 VARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMR 659
Query: 659 QAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
AAQC+GRV+R K DYG+M+ AD+R++R K+++LP WI L D+ NLSTDMAL A+
Sbjct: 660 HAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAK 717
Query: 719 E 719
+
Sbjct: 718 K 718
>SGD|S000000973 [details] [associations]
symbol:RAD3 "5' to 3' DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0000439 "core TFIIH complex"
evidence=IDA] [GO:0005675 "holo TFIIH complex" evidence=IDA]
[GO:0070816 "phosphorylation of RNA polymerase II C-terminal
domain" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0000990 "core RNA polymerase
binding transcription factor activity" evidence=IC] [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0010525 "regulation of transposition,
RNA-mediated" evidence=IMP] [GO:0043141 "ATP-dependent 5'-3' DNA
helicase activity" evidence=IDA] [GO:0000019 "regulation of mitotic
recombination" evidence=IMP] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0033683 "nucleotide-excision repair, DNA
incision" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] InterPro:IPR001945
InterPro:IPR002464 InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488 SMART:SM00491
SGD:S000000973 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0046872
GO:GO:0003684 GO:GO:0051539 GO:GO:0006366 EMBL:BK006939 EMBL:U18922
RefSeq:NP_011098.3 GeneID:856918 KEGG:sce:YER171W GO:GO:0070816
GO:GO:0005675 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000205390 KO:K10844 OMA:KDVDGKC GO:GO:0033683
GO:GO:0043141 GeneTree:ENSGT00550000075092 GO:GO:0000439
GO:GO:0000112 GO:GO:0010525 GO:GO:0000019 OrthoDB:EOG4G1QQH
EMBL:X02368 EMBL:K03293 PIR:A23308 RefSeq:NP_011102.3
ProteinModelPortal:P06839 DIP:DIP-2425N IntAct:P06839
MINT:MINT-617451 STRING:P06839 PaxDb:P06839 PeptideAtlas:P06839
EnsemblFungi:YER171W GeneID:856922 KEGG:sce:YER175C CYGD:YER171w
NextBio:983374 Genevestigator:P06839 GermOnline:YER171W
Uniprot:P06839
Length = 778
Score = 1908 (676.7 bits), Expect = 4.8e-197, P = 4.8e-197
Identities = 352/717 (49%), Positives = 505/717 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M F ++D+ V FPY IYPEQY+YM ++K+ LD G+ +LEMP+GTGKT++LLSL +Y
Sbjct: 1 MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ PE+ K+IYC+RT+ E+EK L EL+ L +Y+T+ LG +GL+SRKNLC++
Sbjct: 61 MHYPEHR-KIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPE 119
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENP--NIETCEFFENYEKAASAAVLPPGVYTLQ 178
V VD CR+ T + E+P N+E CE+ EN LP GV++ +
Sbjct: 120 VSKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFE 179
Query: 179 DLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN 238
L + +++ CPYF+ R M+ N+++YSY YLLDPK+A +S E+ K+S+V+FDEAHN
Sbjct: 180 KLLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHN 239
Query: 239 IDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
IDNVCIE+LS+ + L ATR + +++ I + D+ +L+ EY +LV+GL L
Sbjct: 240 IDNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADIL 299
Query: 299 PIADA-WLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
+ ++ P LP D+L EA+PGNIRRAEHF+ L+RL++YL+ R++ +V E P SF
Sbjct: 300 TDQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSF 359
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ + I++K LRFC ERL L+ TLE+T+ ++F ++ I FATL+ TY GF +I
Sbjct: 360 LQHLKQLTFIERKPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEEGFLLI 419
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
IEP++ +P+P+++ +C DAS+A+KPVF+RF SV+ITSGT+SP+D+YPR+LNF V+
Sbjct: 420 IEPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVL 479
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
+S+ M+L + PM++T+GSDQ+ +S++F++R+DP + RNYG +LVE I PDG+V
Sbjct: 480 QKSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVV 539
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ I++ W GIL E+ +HKL+ +ET D ET+LAL+ YRKAC GRGA+
Sbjct: 540 FFPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILL 599
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDAL 657
SVARGKV+EGIDFD YGR V+M G+PFQYT S+IL ARLE++R+ ++I+E DFL+FDA+
Sbjct: 600 SVARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFMRENYRIRENDFLSFDAM 659
Query: 658 RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAL 714
R AAQC+GRV+R K DYG+M+ AD+R+SR KRS+LP WI L DA LNLSTDMA+
Sbjct: 660 RHAAQCLGRVLRGKDDYGVMVLADRRFSR--KRSQLPKWIAQGLSDADLNLSTDMAI 714
>UNIPROTKB|J9NWT1 [details] [associations]
symbol:ERCC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006289 "nucleotide-excision
repair" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 Pfam:PF13307
PRINTS:PR00852 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 GO:GO:0006289 TIGRFAMs:TIGR00604
GeneTree:ENSGT00550000075092 EMBL:AAEX03000876
Ensembl:ENSCAFT00000044333 Uniprot:J9NWT1
Length = 707
Score = 1907 (676.4 bits), Expect = 6.1e-197, P = 6.1e-197
Identities = 357/648 (55%), Positives = 476/648 (73%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
V+ VD C TAS+VRA ++ ++ C F+E ++ LP G+Y L DL
Sbjct: 121 VMPLRFGKDVDGKCHSLTASYVRAQYQQDSSLPHCRFYEEFDVHGRQVPLPAGIYNLDDL 180
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNID 240
+A G++QGWCPYFLAR+ + ANVVVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNID
Sbjct: 181 KALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIAELVSKELARKAVVVFDEAHNID 240
Query: 241 NVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPI 300
NVCI+++SV++ R+TL+ NL + + + R K TD RLR EY RLVEGL
Sbjct: 241 NVCIDSMSVNITRRTLDRCQGNLETLQKTVLRIKETDEQRLREEYRRLVEGLREASAARE 300
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVAS 360
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++
Sbjct: 301 TDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSG 360
Query: 361 ITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP 420
+ I +K LRFC ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEP
Sbjct: 361 LAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEP 420
Query: 421 FDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS 480
FD+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +
Sbjct: 421 FDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMAT 480
Query: 481 FKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFV 540
F M+L R C+CPM++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF
Sbjct: 481 FTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFT 540
Query: 541 SYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVA 600
SY YM+ +A+W + GIL+ I ++KL+FIETQD ET++AL+ Y++AC+ GRGA+ SVA
Sbjct: 541 SYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVA 600
Query: 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKE 648
RGKV+EGIDF HYGR VIMFGVP+ YT S+IL ARLEYLRD FQI+E
Sbjct: 601 RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRE 648
>WB|WBGene00021752 [details] [associations]
symbol:Y50D7A.2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0009792 "embryo development
ending in birth or egg hatching" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR001945 InterPro:IPR002464 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR010643 InterPro:IPR014013
Pfam:PF06733 Pfam:PF06777 Pfam:PF13307 PRINTS:PR00852
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0003677 GO:GO:0000003
EMBL:FO081772 GO:GO:0004003 GO:GO:0006289 eggNOG:COG1199
TIGRFAMs:TIGR00604 HOGENOM:HOG000205390 KO:K10844 OMA:KDVDGKC
GeneTree:ENSGT00550000075092 RefSeq:NP_497182.2 UniGene:Cel.30456
ProteinModelPortal:Q9N3L2 STRING:Q9N3L2 PaxDb:Q9N3L2
EnsemblMetazoa:Y50D7A.2 GeneID:175190 KEGG:cel:CELE_Y50D7A.2
UCSC:Y50D7A.2 CTD:175190 WormBase:Y50D7A.2 InParanoid:Q9N3L2
NextBio:887130 Uniprot:Q9N3L2
Length = 606
Score = 1525 (541.9 bits), Expect = 1.8e-156, P = 1.8e-156
Identities = 285/541 (52%), Positives = 392/541 (72%)
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
+DLR+ G+++ CPYF AR + A++VVYSY Y+LDPK+A ++SK+ ++SVVVFDEAH
Sbjct: 27 EDLRSLGREKKICPYFTARQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAH 86
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGN 297
NIDNVCIE++SV++ ++ + A + L + + R K++++ +L++EY++LVEGL
Sbjct: 87 NIDNVCIESMSVAISQKNADRALQELQSLEGVVNRMKSSNSEKLQSEYDKLVEGLKRTER 146
Query: 298 LPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSF 357
D L+NP LP IL EAVPGNIR+A HFL L+R V+Y+R RL T V E P +F
Sbjct: 147 ERANDERLANPVLPDQILHEAVPGNIRQANHFLLFLKRFVEYIRHRLRTHQVLIESPAAF 206
Query: 358 VASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSII 417
+ I I++K +RFC ERL +L+ TLEITD + + + TLV TY++GFS+I
Sbjct: 207 MKDILDRMCIERKPMRFCAERLSNLVKTLEITDNGDVWALSQVTTLCTLVSTYSKGFSVI 266
Query: 418 IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVV 477
+EP D V+ LSCHDAS+A++PV RFQSV+ITSGTLSP+++YP++L+F P V
Sbjct: 267 VEPQDGSQL----AVITLSCHDASIAIRPVMSRFQSVIITSGTLSPLEMYPKVLDFDPSV 322
Query: 478 SRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVC 537
SF M+L R C+ P+V+ RG+DQ+ ++++F+ R+D V RNYG L++EM S+VPDG+V
Sbjct: 323 IASFTMTLARPCLSPLVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVV 382
Query: 538 FFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFF 597
FF SY YM+ +I W + I+ E+M++KL+FIET D +ET+ AL+ Y +ACD GRGAV F
Sbjct: 383 FFTSYLYMENVIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEACDSGRGAVLF 442
Query: 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDAL 657
SVARGKV+EGIDF H GR VIM G+P+ YT S++L ARLEYLRD F IKE DFLTFDA+
Sbjct: 443 SVARGKVSEGIDFSHHLGRCVIMLGIPYMYTESRVLRARLEYLRDQFGIKENDFLTFDAM 502
Query: 658 RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIA 717
R AQC+GR +RSK DYG+M+FADKR+SR+DKR KLP W+ +L A NLS D A +A
Sbjct: 503 RHTAQCMGRALRSKTDYGLMVFADKRFSRNDKRGKLPRWMQEYLEPACTNLSIDEAAQVA 562
Query: 718 R 718
R
Sbjct: 563 R 563
>UNIPROTKB|K7EIT8 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR010614 InterPro:IPR010643
InterPro:IPR014013 Pfam:PF06733 Pfam:PF06777 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 INTERPRO:IPR013020 TIGRFAMs:TIGR00604
EMBL:L47234 HGNC:HGNC:3434 Ensembl:ENST00000586131 Uniprot:K7EIT8
Length = 292
Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
Identities = 146/292 (50%), Positives = 196/292 (67%)
Query: 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84
M ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y + P KLIYC+RTV E+EK +
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 85 AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRA 144
EL+ L N+ + G L + LSSRKNLC++ V VD C TAS+VRA
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
Query: 145 LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANV 204
+ ++ C F+E ++ LP G+Y L DL+A G++QGWCPYFLAR+ + ANV
Sbjct: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILHANV 180
Query: 205 VVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLS 264
VVYSY YLLDPK+A ++SKE+ +++VVVFDEAHNIDNVCI+++SV++ R+TL+ NL
Sbjct: 181 VVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQGNLE 240
Query: 265 RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILK 316
+ + + R K TD RLR EY RLVEGL DA L+NP LP ++L+
Sbjct: 241 TLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQ 292
>UNIPROTKB|K7EKF3 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR001945
InterPro:IPR010643 Pfam:PF06777 PRINTS:PR00852 EMBL:L47234
HGNC:HGNC:3434 Ensembl:ENST00000587376 Uniprot:K7EKF3
Length = 202
Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
Identities = 110/193 (56%), Positives = 149/193 (77%)
Query: 302 DAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASI 361
DA L+NP LP ++L+EAVPG+IR AEHFL LRRL++Y++ RL ++V +E P +F++ +
Sbjct: 10 DAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGL 69
Query: 362 TAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPF 421
I +K LRFC ERL SL+ TLEITD +F + + +FATLV TY +GF+IIIEPF
Sbjct: 70 AQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPF 129
Query: 422 DERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSF 481
D+R P I +P+L SC DASLA+KPVF+RFQSV+ITSGTLSP+D+YP++L+FHPV +F
Sbjct: 130 DDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATF 189
Query: 482 KMSLTRDCICPMV 494
M+L R C+CPM+
Sbjct: 190 TMTLARVCLCPML 202
>ZFIN|ZDB-GENE-050306-11 [details] [associations]
symbol:rtel1 "regulator of telomere elongation
helicase 1" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-050306-11 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 KO:K11136 CTD:51750 EMBL:BX004876
IPI:IPI01016862 RefSeq:NP_001013328.2 UniGene:Dr.87074
ProteinModelPortal:F1QNW3 Ensembl:ENSDART00000123445 GeneID:503732
KEGG:dre:503732 NextBio:20866277 Bgee:F1QNW3 Uniprot:F1QNW3
Length = 1177
Score = 348 (127.6 bits), Expect = 1.2e-51, Sum P(3) = 1.2e-51
Identities = 88/282 (31%), Positives = 141/282 (50%)
Query: 432 VLQLSCHDASLAVKPVF-DRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
VL C +++ + + +++TSGTLSP+ + + VS + RD I
Sbjct: 451 VLSYWCFSPGFSMQELLRQEVRCIILTSGTLSPLSSFTCEMQIPFPVSLENPHVIQRDQI 510
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
++ +G D + +ST FD R P + G LV + +VP G++ FF SY MD+ +
Sbjct: 511 FVSIIEKGPDGVQLSTAFDRRFVPENMSSMGNTLVNLSRVVPHGLLVFFPSYPVMDKTLE 570
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDC--GRGAVFFSVARGKVAEGI 608
W G I K +F+E + T +D Y D G FF+V RGK +EG+
Sbjct: 571 FWRAKGHADRIENVKPMFVEPRGKGTFTEVIDGYYGKVDDPNSSGGSFFAVCRGKASEGL 630
Query: 609 DFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIK-EG-DFLTFDA-LRQAA---- 661
DF YGR V++ G+PF + ++ +++YL + + K G +LT RQ A
Sbjct: 631 DFADTYGRGVVITGLPFPPRMDPRVVLKMQYLDEMCRNKISGVKYLTGQEWYRQQASRAV 690
Query: 662 -QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR 702
Q +GRVIR + DYG + D R+ D R++LP W+ +++
Sbjct: 691 NQAIGRVIRHREDYGAIFLCDHRFKSADARNQLPSWVRPYVK 732
Score = 219 (82.2 bits), Expect = 1.2e-51, Sum P(3) = 1.2e-51
Identities = 61/211 (28%), Positives = 108/211 (51%)
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+T ++L + N + ++ KI +G SR+ LC+N V+ E+ CR + +S
Sbjct: 114 RTHSQLTQVVN-ELKNTSYRPKICVLG--SREQLCINQEVMRHESNHIKVHMCRAKVSS- 169
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
+C F+ N ++ ++ + + ++DL GK+Q CPY+L+R + Q
Sbjct: 170 -----------RSCIFYNNVDEKSTDKEIVNSILDVEDLVKTGKKQRVCPYYLSRSLKQH 218
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
A+V+ Y YLLDPK + E+ K +VV+FDEAHN++ +C E+ S + L A
Sbjct: 219 ADVIFMPYNYLLDPKSRRAHNIEL-KGAVVIFDEAHNVEKMCEESTSFDLTPHDLISAIE 277
Query: 262 NLSRINQEIERFKATDAGRLRAEYNRLVEGL 292
+ R+ +E +A+D + + + VE L
Sbjct: 278 AVDRLLRE----QASDISKADSAEDFNVESL 304
Score = 103 (41.3 bits), Expect = 1.2e-51, Sum P(3) = 1.2e-51
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ KL+ + V FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 3 VIKLKGINVDFPFTP-YPCQEDYMSKVIECLQKKVNGVLESPTGTGKTLCLL 53
Score = 74 (31.1 bits), Expect = 1.6e-36, Sum P(3) = 1.6e-36
Identities = 24/72 (33%), Positives = 37/72 (51%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK N R P KI +G SR+ LC+N V+ E+
Sbjct: 108 KIIYASRTHSQLTQVVNELK---NTSYR---P--KICVLG--SREQLCINQEVMRHESNH 157
Query: 129 SVDAACRKRTAS 140
CR + +S
Sbjct: 158 IKVHMCRAKVSS 169
Score = 40 (19.1 bits), Expect = 9.9e-19, Sum P(3) = 9.9e-19
Identities = 16/38 (42%), Positives = 18/38 (47%)
Query: 402 DFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHD 439
DFA TY RG I PF RM P VL++ D
Sbjct: 631 DFAD---TYGRGVVITGLPFPPRMD--PRVVLKMQYLD 663
>UNIPROTKB|Q16X92 [details] [associations]
symbol:AAEL008960 "Regulator of telomere elongation
helicase 1 homolog" species:7159 "Aedes aegypti" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH477545 RefSeq:XP_001653621.1 UniGene:Aae.7622
ProteinModelPortal:Q16X92 PRIDE:Q16X92 EnsemblMetazoa:AAEL008960-RA
GeneID:5571306 KEGG:aag:AaeL_AAEL008960 VectorBase:AAEL008960
HOGENOM:HOG000007558 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
PhylomeDB:Q16X92 Uniprot:Q16X92
Length = 1010
Score = 366 (133.9 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 86/286 (30%), Positives = 154/286 (53%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
V+ C + ++ + R +S+++TSGTL+P+ L+ V + +
Sbjct: 461 VVSFWCFNPGFGMRQLLGRNARSIILTSGTLAPLKPLISELDIPIAVRLENPHIIDGSQV 520
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
C ++ +G D+ +++ + R +P + G+ ++ I+P G++ FF SY +++
Sbjct: 521 CVKIVGQGPDKESLNSSYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQE 580
Query: 551 TWNDSGILKEIMQHKLVFIETQ--DVVETTLALDNYRKACDC-GRGAVFFSVARGKVAEG 607
W ++GI +I + K +F+E + D T++ + Y+K D G+GAVF +V RGKV+EG
Sbjct: 581 AWQETGIWAQISRTKPIFVEPRGKDQFLNTMS-EYYQKINDPDGKGAVFMAVCRGKVSEG 639
Query: 608 IDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTF----QIKEGD-FLTFDALRQAAQ 662
+DF GR VI+ G+PF ++ + +YL++ +I GD + + +A R Q
Sbjct: 640 LDFADMNGRAVIITGLPFPPLKDARVILKKKYLQEVRTRENEIISGDEWYSLEAARAVNQ 699
Query: 663 CVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR-DAHLN 707
+GRVIR K DYG ++ D R+ H ++S+L WI HL + H N
Sbjct: 700 AIGRVIRHKNDYGAILLCDNRFHNHRQKSQLSSWIQKHLNTNQHQN 745
Score = 177 (67.4 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 55/259 (21%), Positives = 115/259 (44%)
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAA 168
L SR LC++ V E + C+ + S TC F+ E
Sbjct: 150 LGSRDQLCIHPEVSKEEGNSTKTNLCKAKVQS------------RTCSFYSRVESCKERP 197
Query: 169 -VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQK 227
V+ + ++DL G + CP+FL++ +++ A+++ Y YLLDPK + E+
Sbjct: 198 EVVSNVIMDIEDLVKVGTKVRACPFFLSKELIESADILFMPYNYLLDPKARKANNLEISN 257
Query: 228 ESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKAT-DAGRLRAEYN 286
++++ DEAHN++ +C E+ S+ +R + +++ I + ++ A + + ++
Sbjct: 258 -TIIILDEAHNVEKMCEESASMQIRSTDIALCIDDVTSIMKVMDHSVAIPEDDETKKDFT 316
Query: 287 ----RLVEGLALR-----GNLPIADAWLSNPALPSDILKEAVP-GNIRRAEHFL--HVLR 334
L++ + L+ ++P+ + N P + E NI+ + + +L
Sbjct: 317 IDDLALLKEMLLQLEKTVDSIPVMFSQGGN-TFPGTYIFEIFEKANIKEGNYHIIAQLLE 375
Query: 335 RLVQYLRGRLETENVEKEG 353
++QY+ E N + G
Sbjct: 376 NIIQYIATITEKNNFVRRG 394
Score = 103 (41.3 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+++ +TV FP++ Y Q YM + L + +LE PTGTGKT++LL ++VL
Sbjct: 4 YQINGITVNFPFEP-YQVQRDYMSRVIECLQNSTNGVLESPTGTGKTLSLLCSSLAWVLH 62
Query: 63 K 63
K
Sbjct: 63 K 63
Score = 55 (24.4 bits), Expect = 7.0e-37, Sum P(4) = 7.0e-37
Identities = 19/88 (21%), Positives = 41/88 (46%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K++Y +RT ++ + + E+K T + + + + L SR LC++ V E
Sbjct: 119 KIVYASRTHSQLTQVMQEMK-----NTSY----SFMKGVILGSRDQLCIHPEVSKEEGNS 169
Query: 129 SVDAACRKRTASWVRALAAENPNIETCE 156
+ C+ + S R + + +E+C+
Sbjct: 170 TKTNLCKAKVQS--RTCSFYS-RVESCK 194
Score = 39 (18.8 bits), Expect = 7.0e-37, Sum P(4) = 7.0e-37
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 295 RGNLPIADAWLSNPAL-PS 312
RGN+ AD W + L PS
Sbjct: 436 RGNVKQADGWTATKQLVPS 454
>MGI|MGI:2139369 [details] [associations]
symbol:Rtel1 "regulator of telomere elongation helicase 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000723 "telomere maintenance" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity,
acting on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 MGI:MGI:2139369
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 GO:GO:0000723 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
KO:K11136 CTD:51750 EMBL:AY481619 EMBL:AY481620 EMBL:AY481621
EMBL:AY481622 EMBL:AY481623 EMBL:AK173097 EMBL:AK145145
EMBL:AL928965 EMBL:BC105578 EMBL:BC144977 EMBL:BC144978
EMBL:BC145658 IPI:IPI00274165 IPI:IPI00467288 IPI:IPI00754466
IPI:IPI00756345 IPI:IPI00756903 IPI:IPI00929860
RefSeq:NP_001001882.3 RefSeq:NP_001160137.1 RefSeq:NP_001160138.1
RefSeq:NP_001160139.1 RefSeq:NP_001160140.1 UniGene:Mm.11333
ProteinModelPortal:Q0VGM9 SMR:Q0VGM9 STRING:Q0VGM9
PhosphoSite:Q0VGM9 PRIDE:Q0VGM9 Ensembl:ENSMUST00000048608
Ensembl:ENSMUST00000054622 Ensembl:ENSMUST00000098971
Ensembl:ENSMUST00000108814 Ensembl:ENSMUST00000108815
Ensembl:ENSMUST00000148252 GeneID:269400 KEGG:mmu:269400
UCSC:uc008olu.2 UCSC:uc008olv.2 UCSC:uc008olw.2 UCSC:uc008olx.2
UCSC:uc012cmk.1 UCSC:uc012cml.1 InParanoid:Q6H1L3 OMA:VLKMQFL
ChiTaRS:RTEL1 NextBio:392832 Bgee:Q0VGM9 Genevestigator:Q0VGM9
Uniprot:Q0VGM9
Length = 1203
Score = 321 (118.1 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 82/306 (26%), Positives = 156/306 (50%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDC 489
VL C S +++ V +++++TSGTL+P+ + + PV + + + ++
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHI-IDKNQ 510
Query: 490 ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
+ ++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 511 LWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKSL 570
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEG 607
W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +EG
Sbjct: 571 EFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASEG 630
Query: 608 IDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEG---------DFLTFDALR 658
+DF GR VI+ G+P+ + ++ ++++L D + + G ++ A R
Sbjct: 631 LDFSDMNGRGVIVTGLPYPPRMDPRVVLKMQFL-DEMRGRSGVGGQCLSGQEWYQQQASR 689
Query: 659 QAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
Q +GRVIR + DYG + D R++ D R++LP W+ +L+ + N H+ R
Sbjct: 690 AVNQAIGRVIRHRHDYGAIFLCDHRFAYADARAQLPSWVRPYLK-VYDNFG-----HVIR 743
Query: 719 EVGNFY 724
+V F+
Sbjct: 744 DVAQFF 749
Score = 227 (85.0 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 60/193 (31%), Positives = 96/193 (49%)
Query: 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIE 153
+ R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 ELRNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS------------R 170
Query: 154 TCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLL 213
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++ Y YLL
Sbjct: 171 SCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLL 230
Query: 214 DPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE-R 272
D K S ++ K +VV+FDEAHN++ +C E+ S + T L INQ +E +
Sbjct: 231 DAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEIINQVLEEQ 286
Query: 273 FKATDAGRLRAEY 285
+ T G L+ E+
Sbjct: 287 ARVTQQGELQQEF 299
Score = 105 (42.0 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLL 53
Score = 77 (32.2 bits), Expect = 5.7e-34, Sum P(3) = 5.7e-34
Identities = 29/91 (31%), Positives = 47/91 (51%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + EL+ N R P K+ +G SR+ LC++ V E+
Sbjct: 108 KIIYASRTHSQLTQVIRELR---NTAYR---P--KVCVLG--SREQLCIHPEVKKQESNH 157
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFE 159
+ CRK+ AS R+ N N+E +F E
Sbjct: 158 MQISLCRKKVAS--RSCHFYN-NVEA-KFLE 184
>UNIPROTKB|B4PZB4 [details] [associations]
symbol:GE16425 "Regulator of telomere elongation helicase 1
homolog" species:7245 "Drosophila yakuba" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CM000162 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_002099973.1
EnsemblMetazoa:FBtr0262943 GeneID:6524109 KEGG:dya:Dyak_GE16425
FlyBase:FBgn0233951 Uniprot:B4PZB4
Length = 985
Score = 341 (125.1 bits), Expect = 4.6e-49, Sum P(3) = 4.6e-49
Identities = 83/280 (29%), Positives = 148/280 (52%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 453 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 510
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 511 QVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKC 570
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+EG+
Sbjct: 571 VDAWQASGLWADISVKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGL 630
Query: 609 DFDRHYGRLVIMFGVPFQYTLS-KILLAR--LEYLRDTF-QIKEG-DFLTFDALRQAAQC 663
DF GR VI+ G+PF K++L R LE R Q+ G ++ DA R Q
Sbjct: 631 DFADRNGRAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLSGQEWYNLDATRAVNQA 690
Query: 664 VGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRD 703
+GRVIR + DYG ++ D R+ + +L WI HL D
Sbjct: 691 IGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGD 730
Score = 207 (77.9 bits), Expect = 4.6e-49, Sum P(3) = 4.6e-49
Identities = 74/306 (24%), Positives = 134/306 (43%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK +T + A + ++ L SR LC++ V+ +
Sbjct: 108 KVIYASRTHSQLTQAMRELK-----RTAY----ANMRSVVLGSRDQLCIHPEVMREQGNS 158
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP-PGVYTLQDLRAFGKQQ 187
+ C+ R S +TC F E L P + ++DL G++
Sbjct: 159 NKTNMCKLRVHS------------KTCSFQMRVESRKDHPDLRGPSIMDIEDLVKVGQRL 206
Query: 188 GWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEAL 247
CPYF +R +V A++ Y YLLDPK E+ ++V+ DEAHNI+ +C E+
Sbjct: 207 KICPYFASRELVPQADITFMPYNYLLDPKARKANKIELGN-TIVILDEAHNIEKICEESA 265
Query: 248 SVSVRRQTLEGATRNLSRINQEIERFKATDAGR-----LRAEYNRLVEGLALRGNLPIAD 302
SV ++ + A +++ I Q ++ D G + L++ + L I
Sbjct: 266 SVQIKSSDVAMAIEDVTHIMQVFASGESQDMGGDEPKDFTLDDLTLLKEMLLEFEKAIDA 325
Query: 303 AWLSNPA----LPSDILKEAV-PGNIR--RAEHFLHVLRRLVQYLRGRLETENVEKEGPV 355
+ N P+ ++ E + N + +L +LVQYL + + K G
Sbjct: 326 VVVENAVEGTTFPASMMYELLGKANFTYGNVATIVSLLDKLVQYLLVASQQMTIRKGGTF 385
Query: 356 SFVASI 361
+ ++ +
Sbjct: 386 TMLSDL 391
Score = 94 (38.1 bits), Expect = 4.6e-49, Sum P(3) = 4.6e-49
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK 63
+ V+FP++ YP Q +YM ++ + L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YPVQRAYMEKVIQCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63
Score = 48 (22.0 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 41 EMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQ 94
+M G T +LS + + V + E+ + +Y + VH L E+K H Q
Sbjct: 376 QMTIRKGGTFTMLSDLLTIVFANKEDVMSKVYASFKVHVQ---LEEVKQGHGKQ 426
>UNIPROTKB|Q6H1L8 [details] [associations]
symbol:Rtel1 "Regulator of telomere elongation helicase 1"
species:10096 "Mus spretus" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=ISS]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 MGI:MGI:2139369
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
GO:GO:0000723 GO:GO:0010569 TIGRFAMs:TIGR00604 EMBL:AY481613
EMBL:AY481614 EMBL:AY481615 EMBL:AY481616 EMBL:AY481617
EMBL:AY530632 ProteinModelPortal:Q6H1L8 Uniprot:Q6H1L8
Length = 1203
Score = 313 (115.2 bits), Expect = 1.1e-48, Sum P(3) = 1.1e-48
Identities = 83/306 (27%), Positives = 156/306 (50%)
Query: 432 VLQLSCHDASLAVKP-VFDRFQSVVITSGTLSPIDLYP--RLLNFHPVVSRSFKMSLTRD 488
VL C S +++ V +++++TSGTL+P+ + + + F PV + + + ++
Sbjct: 452 VLSYWCFSPSQSMRELVCQGVRTLILTSGTLAPLSSFALEKQIPF-PVCLENPHI-IDKN 509
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ RG D + +S+ +D R + GK L + +VP G++ FF SY M++
Sbjct: 510 QLWVGIVPRGPDGVQLSSAYDKRFSEECLSSLGKALSNIARVVPHGLLVFFPSYPVMEKS 569
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAE 606
+ W G+ +++ K +F+E ++ + +D Y + A GA F +V RGK +E
Sbjct: 570 LEFWQVQGLARKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPASNGATFLAVCRGKASE 629
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEG---------DFLTFDAL 657
G+DF GR VI+ G+P+ + ++ ++++L D + + G ++ A
Sbjct: 630 GLDFSDMNGRGVIVTGLPYPPRMDPRVVLKMQFL-DEMRGRSGVGGQCLSGQEWYQQQAS 688
Query: 658 RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIA 717
R Q +GRVIR + DYG + D R++ D R++LP W+ +L+ + N H
Sbjct: 689 RAVNQAIGRVIRHRHDYGAIFLCDHRFAYADARAQLPSWVRPYLK-VYDNFG-----HAI 742
Query: 718 REVGNF 723
R+V F
Sbjct: 743 RDVAQF 748
Score = 227 (85.0 bits), Expect = 1.1e-48, Sum P(3) = 1.1e-48
Identities = 60/193 (31%), Positives = 96/193 (49%)
Query: 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIE 153
+ R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 ELRNTAYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS------------R 170
Query: 154 TCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLL 213
+C F+ N E L + ++DL G +Q CPY+L+R+M Q A+++ Y YLL
Sbjct: 171 SCHFYNNVEAKFLEQDLATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLL 230
Query: 214 DPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE-R 272
D K S ++ K +VV+FDEAHN++ +C E+ S + T L INQ +E +
Sbjct: 231 DAKSRKAHSIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEIINQVLEEQ 286
Query: 273 FKATDAGRLRAEY 285
+ T G L+ E+
Sbjct: 287 ARVTQQGELQQEF 299
Score = 105 (42.0 bits), Expect = 1.1e-48, Sum P(3) = 1.1e-48
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLL 53
Score = 73 (30.8 bits), Expect = 1.2e-32, Sum P(3) = 1.2e-32
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT + + + EL+ N R P K+ +G SR+ LC++ V E+
Sbjct: 108 KIIYASRTHSQPTQVIRELR---NTAYR---P--KVCVLG--SREQLCIHPEVKKQESNH 157
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFE 159
+ CRK+ AS R+ N N+E +F E
Sbjct: 158 MQISLCRKKVAS--RSCHFYN-NVEA-KFLE 184
Score = 37 (18.1 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 501 QLPVSTKFDMRSDPGVARNYGK 522
+L +S D + DPG N+G+
Sbjct: 988 KLTLSEGVDRQLDPGQHLNHGQ 1009
>UNIPROTKB|B3NSW1 [details] [associations]
symbol:GG18780 "Regulator of telomere elongation helicase 1
homolog" species:7220 "Drosophila erecta" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 TIGRFAMs:TIGR00604 EMBL:CH954180
KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001977003.1
EnsemblMetazoa:FBtr0138834 GeneID:6550838 KEGG:der:Dere_GG18780
FlyBase:FBgn0110988 Uniprot:B3NSW1
Length = 985
Score = 340 (124.7 bits), Expect = 8.6e-48, Sum P(3) = 8.6e-48
Identities = 83/280 (29%), Positives = 148/280 (52%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 453 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 510
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 511 QVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKC 570
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+EG+
Sbjct: 571 VDAWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGL 630
Query: 609 DFDRHYGRLVIMFGVPFQYTLS-KILLAR--LEYLRDTF-QIKEG-DFLTFDALRQAAQC 663
DF GR VI+ G+PF K++L R LE R Q+ G ++ DA R Q
Sbjct: 631 DFADRNGRAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLSGQEWYNLDATRAVNQA 690
Query: 664 VGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRD 703
+GRVIR + DYG ++ D R+ + +L WI HL D
Sbjct: 691 IGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGD 730
Score = 196 (74.1 bits), Expect = 8.6e-48, Sum P(3) = 8.6e-48
Identities = 67/273 (24%), Positives = 121/273 (44%)
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
A + ++ L SR LC++ V+ + + C+ R S +TC F
Sbjct: 132 ANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHS------------KTCTFQMRV 179
Query: 162 EKAASAAVLP-PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
E L P + ++DL G++ CPYF +R +V A++ Y YLLDPK
Sbjct: 180 ESRKDHPDLRGPSIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKA 239
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATD-AG 279
E+ ++V+ DEAHNI+ +C E+ SV ++ + A +++ I Q ++ D AG
Sbjct: 240 NKIELGN-TIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGESQDMAG 298
Query: 280 RLRAEYN----RLVEGLALRGNLPIADAWLSNPA----LPSDILKEAV-PGNIR--RAEH 328
++ L++ + L I + N A P+ ++ E + N
Sbjct: 299 DEPKDFTLDDLTLLKEMLLELEKAIDAVVVDNAAEGTTFPASLMYELLGKANFTYGNVAT 358
Query: 329 FLHVLRRLVQYLRGRLETENVEKEGPVSFVASI 361
+ +L +LVQYL + ++ K G + ++ +
Sbjct: 359 IVSLLDKLVQYLLVASQQMSIRKGGTFTMLSDL 391
Score = 94 (38.1 bits), Expect = 8.6e-48, Sum P(3) = 8.6e-48
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK 63
+ V+FP++ YP Q +YM ++ + L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YPVQRAYMEKVIQCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63
Score = 67 (28.6 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK +T + A + ++ L SR LC++ V+ +
Sbjct: 108 KVIYASRTHSQLTQAMRELK-----RTAY----ANMRSVVLGSRDQLCIHPEVMREQGNS 158
Query: 129 SVDAACRKRTAS 140
+ C+ R S
Sbjct: 159 NKTNMCKLRVHS 170
Score = 46 (21.3 bits), Expect = 6.2e-27, Sum P(2) = 6.2e-27
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 41 EMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH-EMEKT 83
+M G T +LS + + V + ++ + +Y + VH +ME++
Sbjct: 376 QMSIRKGGTFTMLSDLLTIVFANKQDVMSKVYASFKVHVQMEES 419
>UNIPROTKB|Q7QEI1 [details] [associations]
symbol:AGAP000634 "Regulator of telomere elongation
helicase 1 homolog" species:7165 "Anopheles gambiae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:AAAB01008847 HOGENOM:HOG000007558 KO:K11136 OrthoDB:EOG4S4MX7
RefSeq:XP_311162.5 GeneID:1272449 KEGG:aga:AgaP_AGAP000634
VectorBase:AGAP000634 CTD:1272449 PhylomeDB:Q7QEI1 Uniprot:Q7QEI1
Length = 991
Score = 393 (143.4 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 90/283 (31%), Positives = 157/283 (55%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
V+ C + ++ + D +S+++TSGTL+P+ + L+ VS + R +
Sbjct: 454 VINFWCFNPGFGMRQLVDSGTRSIILTSGTLAPLKPFISELSLPVAVSLENPHIIARSQV 513
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
V+T G D++ +++ F RS+P + G+ + + I+P G++ FF SY +++
Sbjct: 514 YVKVITHGPDRVELNSSFKNRSNPEYIASLGRTALSLCPIIPGGLLIFFPSYPLLNKCSE 573
Query: 551 TWNDSGILKEIMQHKLVFIETQ--DVVETTLALDNYRKACD-CGRGAVFFSVARGKVAEG 607
W SGI +I + K +F+E + D TT+A + Y + D RGA+F +V RGKV+EG
Sbjct: 574 EWQASGIWGQISRLKQIFVEPRGKDQFTTTMA-EYYAQVRDPASRGAIFMAVCRGKVSEG 632
Query: 608 IDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLT------FDALRQAA 661
+DF GR V++ G+PF + ++ + +YL DT + +E + +T +A R
Sbjct: 633 LDFADANGRAVMITGLPFPPMMDARVVLKKQYL-DTNRTRENELITGNDWYSLEASRAVN 691
Query: 662 QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDA 704
Q +GRVIR K DYG ++ D R+ ++++L WI SHLR++
Sbjct: 692 QAIGRVIRHKDDYGAILLCDSRFQNARQQAQLSAWIHSHLRES 734
Score = 187 (70.9 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
Identities = 51/193 (26%), Positives = 95/193 (49%)
Query: 79 EMEKTLAELKLLHNYQTR-HLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKR 137
+ +K A++K+++ +T L A + L + L V S +L + ++ + K+
Sbjct: 101 QQQKANAKMKIIYASRTHSQLSQAMQ----ELKNTSYLFVRSIILGSRDQLCIHPDISKQ 156
Query: 138 TASWVRA-LAAENPNIETCEFFENYEKAAS---AAVLPPGVYTLQDLRAFGKQQGWCPYF 193
+ ++ L E+ C F+ E A A +P V ++DL G++ CPY+
Sbjct: 157 ENNAIKTVLCRESVKARNCSFYNRVETAKDRPDVATVP--VMDIEDLVTVGRKLKACPYY 214
Query: 194 LARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRR 253
L++ +V+ A+V+ Y YLLDPK +Q +V++ DEAHN++ +C E S +R
Sbjct: 215 LSKELVEQADVIFMPYNYLLDPKARKSNGLSLQN-TVIILDEAHNVEKMCEEVGSALLRS 273
Query: 254 QTLEGATRNLSRI 266
+ A + S +
Sbjct: 274 SDIALAIEDTSSV 286
Score = 98 (39.6 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 41/148 (27%), Positives = 67/148 (45%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + + V FP++ Y Q +YM ++ L K + +LE PTGTGKT++LL +++L
Sbjct: 4 YMINGIPVNFPFEP-YELQKNYMAKVIECLQNKTNGVLESPTGTGKTLSLLCSSMAWLLH 62
Query: 63 KPENPVKLIYCTRTVHEMEK--TLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
K H ME TL E L N + L P A+ L +K
Sbjct: 63 MKSKQPK--------HRMETIDTLPEPPELSNAKHAALDPEQ---ALALQQQKANAKMKI 111
Query: 121 VLAAENRDSVDAACR--KRTAS-WVRAL 145
+ A+ + A + K T+ +VR++
Sbjct: 112 IYASRTHSQLSQAMQELKNTSYLFVRSI 139
>FB|FBgn0029798 [details] [associations]
symbol:CG4078 species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 EMBL:AE014298 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 KO:K11136 OMA:PFPPLKD
OrthoDB:EOG4S4MX7 EMBL:BT021290 EMBL:EU217688 EMBL:EU217689
EMBL:EU217690 EMBL:EU217691 EMBL:EU217692 EMBL:EU217693
EMBL:EU217694 EMBL:EU217695 EMBL:EU217696 EMBL:EU217697
EMBL:EU217698 EMBL:EU217699 RefSeq:NP_572254.1 UniGene:Dm.11709
ProteinModelPortal:Q9W484 SMR:Q9W484 IntAct:Q9W484
MINT:MINT-4080348 PaxDb:Q9W484 PRIDE:Q9W484
EnsemblMetazoa:FBtr0070807 EnsemblMetazoa:FBtr0332398 GeneID:31497
KEGG:dme:Dmel_CG4078 UCSC:CG4078-RA FlyBase:FBgn0029798
InParanoid:Q9W484 PhylomeDB:Q9W484 GenomeRNAi:31497 NextBio:773915
Bgee:Q9W484 Uniprot:Q9W484
Length = 985
Score = 342 (125.4 bits), Expect = 1.7e-47, Sum P(3) = 1.7e-47
Identities = 83/280 (29%), Positives = 148/280 (52%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 453 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 510
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 511 QVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKC 570
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+EG+
Sbjct: 571 VDAWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGL 630
Query: 609 DFDRHYGRLVIMFGVPFQYTLS-KILLAR--LEYLRDTF-QIKEG-DFLTFDALRQAAQC 663
DF GR VI+ G+PF K++L R LE R Q+ G ++ DA R Q
Sbjct: 631 DFADRNGRAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLSGQEWYNLDATRAVNQA 690
Query: 664 VGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRD 703
+GRVIR + DYG ++ D R+ + +L WI HL D
Sbjct: 691 IGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGD 730
Score = 192 (72.6 bits), Expect = 1.7e-47, Sum P(3) = 1.7e-47
Identities = 66/273 (24%), Positives = 120/273 (43%)
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
A + ++ L SR LC++ V+ + + C+ R S +TC F
Sbjct: 132 ANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCKLRVHS------------KTCSFQMRV 179
Query: 162 EKAASAAVLP-PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
E L P + ++DL G++ CPYF +R +V A++ Y YLLDPK
Sbjct: 180 ESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELVPQADITFMPYNYLLDPKARKA 239
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATD-AG 279
E+ ++V+ DEAHNI+ +C E+ SV ++ + A +++ I Q ++ D AG
Sbjct: 240 NKIELGN-TIVILDEAHNIEKICEESASVQIKSSDVAMAIEDVTHIMQVFASGESQDMAG 298
Query: 280 RLRAEYN----RLVEGLALRGNLPI----ADAWLSNPALPSDILKEAV-PGNIR--RAEH 328
++ L++ + L I D + P+ ++ E + N
Sbjct: 299 DEPKDFTLDDLTLLKEMLLELEKAIDAIVVDNAVDGTTFPASMMYELLGKANFTYGNVAT 358
Query: 329 FLHVLRRLVQYLRGRLETENVEKEGPVSFVASI 361
+ +L +LVQYL + ++ K G + ++ +
Sbjct: 359 IVSLLDKLVQYLLVASQQMSIRKGGTFTLLSDL 391
Score = 93 (37.8 bits), Expect = 1.7e-47, Sum P(3) = 1.7e-47
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK 63
+ V+FP++ YP Q +YM ++ L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63
Score = 67 (28.6 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK +T + A + ++ L SR LC++ V+ +
Sbjct: 108 KVIYASRTHSQLTQAMRELK-----RTAY----ANMRSVVLGSRDQLCIHPEVMREQGNS 158
Query: 129 SVDAACRKRTAS 140
+ C+ R S
Sbjct: 159 NKTNMCKLRVHS 170
Score = 46 (21.3 bits), Expect = 3.7e-27, Sum P(2) = 3.7e-27
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 41 EMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78
+M G T LLS + + V + E+ + +Y + VH
Sbjct: 376 QMSIRKGGTFTLLSDLLTIVFANKEDVMSKVYASFKVH 413
>UNIPROTKB|D4ACH4 [details] [associations]
symbol:Rtel1 "Regulator of telomere elongation helicase 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR006935 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF04851 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
IPI:IPI00781945 Ensembl:ENSRNOT00000029336 ArrayExpress:D4ACH4
Uniprot:D4ACH4
Length = 1165
Score = 311 (114.5 bits), Expect = 3.6e-47, Sum P(3) = 3.6e-47
Identities = 79/283 (27%), Positives = 146/283 (51%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDC 489
VL C S +++ + + +++++TSGTL+P+ + + PV + + + ++
Sbjct: 452 VLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHI-IDKNQ 510
Query: 490 ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
+ V+ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 511 LWVGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSL 570
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEG 607
W G+ K++ K +F+E ++ + +D Y + A GA F +V RGK +EG
Sbjct: 571 EFWQAQGMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRGKASEG 630
Query: 608 IDFDRHYGRLVIMFGVPFQYTLSKILLARLEYL-------RDTFQIKEG-DFLTFDALRQ 659
+DF GR VI+ G+P+ + ++ ++++L R Q G ++ A R
Sbjct: 631 LDFSDMNGRGVIVTGLPYPPRMDPRVILKMQFLDEMKGRSRVGGQCLSGQEWYQQQASRA 690
Query: 660 AAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR 702
Q +GRVIR + DYG + D R++ D R+ LP W+ +L+
Sbjct: 691 VNQAIGRVIRHRHDYGAIFLCDHRFAYADARAHLPSWVRPYLK 733
Score = 214 (80.4 bits), Expect = 3.6e-47, Sum P(3) = 3.6e-47
Identities = 56/193 (29%), Positives = 96/193 (49%)
Query: 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIE 153
+ R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 ELRNTSYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS------------R 170
Query: 154 TCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLL 213
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++ Y YLL
Sbjct: 171 SCHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLL 230
Query: 214 DPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE-R 272
D K + ++ K +VV+FDEAHN++ +C E+ S + T L INQ +E +
Sbjct: 231 DAKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEVINQVLEEQ 286
Query: 273 FKATDAGRLRAEY 285
+ G L+ E+
Sbjct: 287 ARVAQHGELQQEF 299
Score = 105 (42.0 bits), Expect = 3.6e-47, Sum P(3) = 3.6e-47
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLL 53
Score = 77 (32.2 bits), Expect = 6.5e-33, Sum P(3) = 6.5e-33
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + EL+ N R P K+ +G SR+ LC++ V E+
Sbjct: 108 KIIYASRTHSQLTQVIGELR---NTSYR---P--KVCVLG--SREQLCIHPEVKKQESNH 157
Query: 129 SVDAACRKRTAS 140
+ CRK+ AS
Sbjct: 158 MQISLCRKKVAS 169
>RGD|1306721 [details] [associations]
symbol:Rtel1 "regulator of telomere elongation helicase 1"
species:10116 "Rattus norvegicus" [GO:0000723 "telomere
maintenance" evidence=ISO;ISS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA;ISO;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISO;ISS] [GO:0005634 "nucleus" evidence=IEA;ISO;ISS]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0010569 "regulation of
double-strand break repair via homologous recombination"
evidence=ISO;ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR006935
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF04851 Pfam:PF06733
Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 RGD:1306721 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0000723 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 EMBL:CH474066
HOGENOM:HOG000007558 KO:K11136 CTD:51750 OrthoDB:EOG412M4Q
EMBL:BC086436 IPI:IPI00781945 IPI:IPI00782143 RefSeq:NP_001178786.1
UniGene:Rn.98315 PRIDE:Q5RJZ1 GeneID:362288 KEGG:rno:362288
UCSC:RGD:1306721 NextBio:679364 ArrayExpress:Q5RJZ1
Genevestigator:Q5RJZ1 Uniprot:Q5RJZ1
Length = 1274
Score = 311 (114.5 bits), Expect = 5.4e-47, Sum P(3) = 5.4e-47
Identities = 79/283 (27%), Positives = 146/283 (51%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDC 489
VL C S +++ + + +++++TSGTL+P+ + + PV + + + ++
Sbjct: 452 VLSYWCFSPSHSMRELVQQGVRTLILTSGTLAPLSSFALEMQIPFPVCLENPHI-IDKNQ 510
Query: 490 ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
+ V+ RG D + +S+ +D R + GK L + +VP G++ FF SY M++ +
Sbjct: 511 LWVGVIPRGPDGVQLSSAYDKRFSEECLSSLGKALGNIARVVPHGLLVFFPSYPVMEKSL 570
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRK--ACDCGRGAVFFSVARGKVAEG 607
W G+ K++ K +F+E ++ + +D Y + A GA F +V RGK +EG
Sbjct: 571 EFWQAQGMSKKVEALKPLFVEPRNKGSFSEVIDAYYQQVASPGSNGATFLAVCRGKASEG 630
Query: 608 IDFDRHYGRLVIMFGVPFQYTLSKILLARLEYL-------RDTFQIKEG-DFLTFDALRQ 659
+DF GR VI+ G+P+ + ++ ++++L R Q G ++ A R
Sbjct: 631 LDFSDMNGRGVIVTGLPYPPRMDPRVILKMQFLDEMKGRSRVGGQCLSGQEWYQQQASRA 690
Query: 660 AAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR 702
Q +GRVIR + DYG + D R++ D R+ LP W+ +L+
Sbjct: 691 VNQAIGRVIRHRHDYGAIFLCDHRFAYADARAHLPSWVRPYLK 733
Score = 214 (80.4 bits), Expect = 5.4e-47, Sum P(3) = 5.4e-47
Identities = 56/193 (29%), Positives = 96/193 (49%)
Query: 94 QTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIE 153
+ R+ K+ +G SR+ LC++ V E+ + CRK+ AS
Sbjct: 125 ELRNTSYRPKVCVLG--SREQLCIHPEVKKQESNHMQISLCRKKVAS------------R 170
Query: 154 TCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLL 213
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++ Y YLL
Sbjct: 171 SCHFYNNVEEKSLEQELATPILDIEDLVKNGSKHKVCPYYLSRNLKQQADIIFMPYNYLL 230
Query: 214 DPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE-R 272
D K + ++ K +VV+FDEAHN++ +C E+ S + T L INQ +E +
Sbjct: 231 DAKSRKAHNIDL-KGTVVIFDEAHNVEKICEESASFDL---TPRDVASGLEVINQVLEEQ 286
Query: 273 FKATDAGRLRAEY 285
+ G L+ E+
Sbjct: 287 ARVAQHGELQQEF 299
Score = 105 (42.0 bits), Expect = 5.4e-47, Sum P(3) = 5.4e-47
Identities = 24/49 (48%), Positives = 30/49 (61%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
L VTV FP+ YP Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLL 53
Score = 77 (32.2 bits), Expect = 9.8e-33, Sum P(3) = 9.8e-33
Identities = 23/72 (31%), Positives = 38/72 (52%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + EL+ N R P K+ +G SR+ LC++ V E+
Sbjct: 108 KIIYASRTHSQLTQVIGELR---NTSYR---P--KVCVLG--SREQLCIHPEVKKQESNH 157
Query: 129 SVDAACRKRTAS 140
+ CRK+ AS
Sbjct: 158 MQISLCRKKVAS 169
>UNIPROTKB|E1BTS7 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AADN02019151 EMBL:AADN02019152
EMBL:AADN02019153 IPI:IPI00819960 Ensembl:ENSGALT00000039433
ArrayExpress:E1BTS7 Uniprot:E1BTS7
Length = 1085
Score = 314 (115.6 bits), Expect = 1.7e-46, Sum P(3) = 1.7e-46
Identities = 78/283 (27%), Positives = 141/283 (49%)
Query: 452 QSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
+++++TSGTLSP+ + + PV+ + + R + ++ +G D +++ ++
Sbjct: 475 RTIILTSGTLSPLSSFTMEMQIPFPVLLENPHVIDKRQ-LWVGIIPKGPDGTVLNSAYER 533
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE 570
R + GK + +V +VP G++ FF SY MD+ + W + K I + K +F+E
Sbjct: 534 RFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLEYWREHDFAKRIEEVKPMFVE 593
Query: 571 TQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
++ +D Y + AC GA F +V RGK +EG+DF GR VI+ G+PF
Sbjct: 594 PRNKGSFAEVMDAYYSKIACPKSNGAAFLAVCRGKASEGLDFADMNGRGVIITGLPFPPR 653
Query: 629 LSKILLARLEYLRDTFQIKEG-------DFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681
++ ++++L + + G + A R Q +GRVIR + DYG + D
Sbjct: 654 WEPRVVLKMQFLNEMKKSNMGAQCLSGHQWYNQQASRAVNQAIGRVIRHRQDYGAIFLCD 713
Query: 682 KRYSRHDKRSKLPGWILSHLR--D--AHLNLSTDMALHIAREV 720
R++ + R KLP W+ ++ D H S + +A+E+
Sbjct: 714 DRFTTDNVRGKLPSWVRPYVNVYDNFGHAVRSVSVFFRVAQEI 756
Score = 210 (79.0 bits), Expect = 1.7e-46, Sum P(3) = 1.7e-46
Identities = 59/201 (29%), Positives = 100/201 (49%)
Query: 103 KILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE 162
KI +G SR+ LC+N V E+ CRK+ + RA C F+ N E
Sbjct: 134 KICVLG--SREQLCINPEVKRQESNHMQIYMCRKKVMA--RA----------CHFYNNVE 179
Query: 163 KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS 222
+ ++ L + ++DL G + CPY+L+R + Q A+++ Y YLLD K +
Sbjct: 180 EKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLDAKSRRAHN 239
Query: 223 KEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
E+ K +VV+ DEAHN++ +C E+ S + L A ++ + +E + K +
Sbjct: 240 IEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEE--QAKVVQQNEVN 296
Query: 283 AEYNRLVEGLALRG-NLPIAD 302
AE+N +E ++ G N+ + D
Sbjct: 297 AEFN--MESISSAGLNMELED 315
Score = 98 (39.6 bits), Expect = 1.7e-46, Sum P(3) = 1.7e-46
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
L VTV FP+ Y Q +YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LRGVTVDFPFQP-YECQETYMAKVLECLQTKVNGILESPTGTGKTLCLL 53
Score = 73 (30.8 bits), Expect = 3.0e-32, Sum P(3) = 3.0e-32
Identities = 29/85 (34%), Positives = 42/85 (49%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK N R P KI +G SR+ LC+N V E+
Sbjct: 108 KIIYASRTHSQLTQVINELK---NTVYR---P--KICVLG--SREQLCINPEVKRQESNH 157
Query: 129 SVDAACRKRTASWVRALAAENPNIE 153
CRK+ + RA N N+E
Sbjct: 158 MQIYMCRKKVMA--RACHFYN-NVE 179
Score = 38 (18.4 bits), Expect = 3.5e-17, Sum P(3) = 3.5e-17
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVET-TLALDNYRKACD--CGRGAVFFSV 599
S +D + NDSG+ K+ +F + Q +T T L++ + GR +F +
Sbjct: 328 SAIDAVELPPNDSGVTKDGSYIFELFAQAQITFQTKTSLLESLDQILQFLSGRTGIFINT 387
Query: 600 A 600
+
Sbjct: 388 S 388
>UNIPROTKB|E1BTS6 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AADN02019151 EMBL:AADN02019152
EMBL:AADN02019153 IPI:IPI00822587 Ensembl:ENSGALT00000039434
ArrayExpress:E1BTS6 Uniprot:E1BTS6
Length = 1124
Score = 314 (115.6 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 78/283 (27%), Positives = 141/283 (49%)
Query: 452 QSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
+++++TSGTLSP+ + + PV+ + + R + ++ +G D +++ ++
Sbjct: 475 RTIILTSGTLSPLSSFTMEMQIPFPVLLENPHVIDKRQ-LWVGIIPKGPDGTVLNSAYER 533
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE 570
R + GK + +V +VP G++ FF SY MD+ + W + K I + K +F+E
Sbjct: 534 RFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLEYWREHDFAKRIEEVKPMFVE 593
Query: 571 TQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
++ +D Y + AC GA F +V RGK +EG+DF GR VI+ G+PF
Sbjct: 594 PRNKGSFAEVMDAYYSKIACPKSNGAAFLAVCRGKASEGLDFADMNGRGVIITGLPFPPR 653
Query: 629 LSKILLARLEYLRDTFQIKEG-------DFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681
++ ++++L + + G + A R Q +GRVIR + DYG + D
Sbjct: 654 WEPRVVLKMQFLNEMKKSNMGAQCLSGHQWYNQQASRAVNQAIGRVIRHRQDYGAIFLCD 713
Query: 682 KRYSRHDKRSKLPGWILSHLR--D--AHLNLSTDMALHIAREV 720
R++ + R KLP W+ ++ D H S + +A+E+
Sbjct: 714 DRFTTDNVRGKLPSWVRPYVNVYDNFGHAVRSVSVFFRVAQEI 756
Score = 210 (79.0 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 59/201 (29%), Positives = 100/201 (49%)
Query: 103 KILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE 162
KI +G SR+ LC+N V E+ CRK+ + RA C F+ N E
Sbjct: 134 KICVLG--SREQLCINPEVKRQESNHMQIYMCRKKVMA--RA----------CHFYNNVE 179
Query: 163 KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS 222
+ ++ L + ++DL G + CPY+L+R + Q A+++ Y YLLD K +
Sbjct: 180 EKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLDAKSRRAHN 239
Query: 223 KEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
E+ K +VV+ DEAHN++ +C E+ S + L A ++ + +E + K +
Sbjct: 240 IEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEE--QAKVVQQNEVN 296
Query: 283 AEYNRLVEGLALRG-NLPIAD 302
AE+N +E ++ G N+ + D
Sbjct: 297 AEFN--MESISSAGLNMELED 315
Score = 98 (39.6 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
L VTV FP+ Y Q +YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LRGVTVDFPFQP-YECQETYMAKVLECLQTKVNGILESPTGTGKTLCLL 53
Score = 73 (30.8 bits), Expect = 3.5e-32, Sum P(3) = 3.5e-32
Identities = 29/85 (34%), Positives = 42/85 (49%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK N R P KI +G SR+ LC+N V E+
Sbjct: 108 KIIYASRTHSQLTQVINELK---NTVYR---P--KICVLG--SREQLCINPEVKRQESNH 157
Query: 129 SVDAACRKRTASWVRALAAENPNIE 153
CRK+ + RA N N+E
Sbjct: 158 MQIYMCRKKVMA--RACHFYN-NVE 179
Score = 38 (18.4 bits), Expect = 4.1e-17, Sum P(3) = 4.1e-17
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVET-TLALDNYRKACD--CGRGAVFFSV 599
S +D + NDSG+ K+ +F + Q +T T L++ + GR +F +
Sbjct: 328 SAIDAVELPPNDSGVTKDGSYIFELFAQAQITFQTKTSLLESLDQILQFLSGRTGIFINT 387
Query: 600 A 600
+
Sbjct: 388 S 388
>UNIPROTKB|F1NE49 [details] [associations]
symbol:Gga.49055 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 GO:GO:0000723
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 OMA:VLKMQFL
EMBL:AADN02019151 EMBL:AADN02019152 EMBL:AADN02019153
IPI:IPI00597328 Ensembl:ENSGALT00000009881 ArrayExpress:F1NE49
Uniprot:F1NE49
Length = 1127
Score = 314 (115.6 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 78/283 (27%), Positives = 141/283 (49%)
Query: 452 QSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
+++++TSGTLSP+ + + PV+ + + R + ++ +G D +++ ++
Sbjct: 477 RTIILTSGTLSPLSSFTMEMQIPFPVLLENPHVIDKRQ-LWVGIIPKGPDGTVLNSAYER 535
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE 570
R + GK + +V +VP G++ FF SY MD+ + W + K I + K +F+E
Sbjct: 536 RFSEDYLSSLGKTIGNLVRVVPHGLLVFFPSYPVMDKSLEYWREHDFAKRIEEVKPMFVE 595
Query: 571 TQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
++ +D Y + AC GA F +V RGK +EG+DF GR VI+ G+PF
Sbjct: 596 PRNKGSFAEVMDAYYSKIACPKSNGAAFLAVCRGKASEGLDFADMNGRGVIITGLPFPPR 655
Query: 629 LSKILLARLEYLRDTFQIKEG-------DFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681
++ ++++L + + G + A R Q +GRVIR + DYG + D
Sbjct: 656 WEPRVVLKMQFLNEMKKSNMGAQCLSGHQWYNQQASRAVNQAIGRVIRHRQDYGAIFLCD 715
Query: 682 KRYSRHDKRSKLPGWILSHLR--D--AHLNLSTDMALHIAREV 720
R++ + R KLP W+ ++ D H S + +A+E+
Sbjct: 716 DRFTTDNVRGKLPSWVRPYVNVYDNFGHAVRSVSVFFRVAQEI 758
Score = 210 (79.0 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 59/201 (29%), Positives = 100/201 (49%)
Query: 103 KILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE 162
KI +G SR+ LC+N V E+ CRK+ + RA C F+ N E
Sbjct: 136 KICVLG--SREQLCINPEVKRQESNHMQIYMCRKKVMA--RA----------CHFYNNVE 181
Query: 163 KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS 222
+ ++ L + ++DL G + CPY+L+R + Q A+++ Y YLLD K +
Sbjct: 182 EKSTEKGLMDSIMDIEDLVKNGSKHRACPYYLSRSLKQQADIIFMPYNYLLDAKSRRAHN 241
Query: 223 KEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLR 282
E+ K +VV+ DEAHN++ +C E+ S + L A ++ + +E + K +
Sbjct: 242 IEL-KGTVVILDEAHNVERLCEESSSFDLTAYDLASAIDVINLVLEE--QAKVVQQNEVN 298
Query: 283 AEYNRLVEGLALRG-NLPIAD 302
AE+N +E ++ G N+ + D
Sbjct: 299 AEFN--MESISSAGLNMELED 317
Score = 98 (39.6 bits), Expect = 2.0e-46, Sum P(3) = 2.0e-46
Identities = 23/49 (46%), Positives = 30/49 (61%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
L VTV FP+ Y Q +YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 8 LRGVTVDFPFQP-YECQETYMAKVLECLQTKVNGILESPTGTGKTLCLL 55
Score = 73 (30.8 bits), Expect = 3.6e-32, Sum P(3) = 3.6e-32
Identities = 29/85 (34%), Positives = 42/85 (49%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK N R P KI +G SR+ LC+N V E+
Sbjct: 110 KIIYASRTHSQLTQVINELK---NTVYR---P--KICVLG--SREQLCINPEVKRQESNH 159
Query: 129 SVDAACRKRTASWVRALAAENPNIE 153
CRK+ + RA N N+E
Sbjct: 160 MQIYMCRKKVMA--RACHFYN-NVE 181
Score = 38 (18.4 bits), Expect = 4.1e-17, Sum P(3) = 4.1e-17
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 543 SYMDEIIATWNDSGILKEIMQHKLVFIETQDVVET-TLALDNYRKACD--CGRGAVFFSV 599
S +D + NDSG+ K+ +F + Q +T T L++ + GR +F +
Sbjct: 330 SAIDAVELPPNDSGVTKDGSYIFELFAQAQITFQTKTSLLESLDQILQFLSGRTGIFINT 389
Query: 600 A 600
+
Sbjct: 390 S 390
>UNIPROTKB|B4GU19 [details] [associations]
symbol:GL14463 "Regulator of telomere elongation helicase 1
homolog" species:7234 "Drosophila persimilis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 TIGRFAMs:TIGR00604 KO:K11136
OrthoDB:EOG4S4MX7 EMBL:CH479190 RefSeq:XP_002022098.1
EnsemblMetazoa:FBtr0180078 GeneID:6596883 KEGG:dpe:Dper_GL14463
FlyBase:FBgn0152068 Uniprot:B4GU19
Length = 1009
Score = 346 (126.9 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 84/280 (30%), Positives = 148/280 (52%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 454 IVNFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 511
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + F R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 512 QVYVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKC 571
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+EG+
Sbjct: 572 VDAWQASGLWADISCKKPIFVEPRGKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGL 631
Query: 609 DFDRHYGRLVIMFGVPFQYTLS-KILLARLEYLRDTFQIKEGDFLT------FDALRQAA 661
DF GR VI+ G+PF K++L R YL +T + KE L+ DA R
Sbjct: 632 DFADRNGRAVIITGLPFPPLKDPKVILKR-RYL-ETNRTKENQLLSGQEWYNLDATRAVN 689
Query: 662 QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHL 701
Q +GRVIR + DYG ++ D R+ + +L WI HL
Sbjct: 690 QAIGRVIRHRNDYGAILLCDSRFQDASQVQQLSKWIRGHL 729
Score = 185 (70.2 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 63/273 (23%), Positives = 119/273 (43%)
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
A + ++ L SR LC++ V+ + + C+ R S +TC F
Sbjct: 132 ANMRSVVLGSRDQLCIHPEVMKEQGNSNKVNLCKLRVHS------------KTCTFQLRV 179
Query: 162 E-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
E K P + ++DL G++ CPY+ ++ +V A++ Y YLLDPK
Sbjct: 180 ESKKDHPDFRGPSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKA 239
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGR 280
E+ ++++ DEAHNI+ +C E+ SV +R + A +++ I + ++ +AG
Sbjct: 240 NKIELGN-TIIILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKVFTSGESQEAGG 298
Query: 281 -----LRAEYNRLVEGLALRGNLPIADAWLSNPA----LPSDILKEAV-PGNIR--RAEH 328
+ L++ + L I + NP P+ ++ E + N
Sbjct: 299 DEPKDFTLDDLTLLKEMLLELEKAIDAVVVDNPTDGTTYPASLMYELLGKANFTYGNCAT 358
Query: 329 FLHVLRRLVQYLRGRLETENVEKEGPVSFVASI 361
+ +L +LVQYL + + K G + ++ +
Sbjct: 359 IVALLDKLVQYLMVASQHMTIRKGGTFTMLSDL 391
Score = 83 (34.3 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-EN 66
+ V+FP++ Y Q YM ++ L + +LE PTGTGKT++LL +++ ++ E+
Sbjct: 9 IPVHFPFEP-YNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWIRTRQSEH 67
Query: 67 PVKLIYCTRTVHE 79
++I T E
Sbjct: 68 QQQMIKLKATSKE 80
Score = 66 (28.3 bits), Expect = 1.6e-33, Sum P(4) = 1.6e-33
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK +T + A + ++ L SR LC++ V+ +
Sbjct: 108 KVIYASRTHSQLNQAMRELK-----RTAY----ANMRSVVLGSRDQLCIHPEVMKEQGNS 158
Query: 129 SVDAACRKRTAS 140
+ C+ R S
Sbjct: 159 NKVNLCKLRVHS 170
Score = 48 (22.0 bits), Expect = 4.1e-27, Sum P(3) = 4.1e-27
Identities = 20/76 (26%), Positives = 31/76 (40%)
Query: 47 GKTIALLSLITSYVLSKPENPVKLIYCTRTVH----EMEKTLAELKLLHNYQTRHLGPAA 102
G T +LS + + V + EN + ++ + VH E K + + Q LG
Sbjct: 382 GGTFTMLSDLLTIVFANKENIMSKVHLSFKVHVQVEESNKQQGKSGAIQGKQQGWLGKG- 440
Query: 103 KILAIGLSSRKNLCVN 118
I G SS+ VN
Sbjct: 441 NITTTGTSSKAAKIVN 456
Score = 38 (18.4 bits), Expect = 1.6e-33, Sum P(4) = 1.6e-33
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 184 GKQQGW 189
GKQQGW
Sbjct: 431 GKQQGW 436
Score = 38 (18.4 bits), Expect = 7.6e-31, Sum P(3) = 7.6e-31
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 259 ATRNLSRINQEIERFKATDAGRLRA 283
A+R S++NQ + K T +R+
Sbjct: 112 ASRTHSQLNQAMRELKRTAYANMRS 136
Score = 37 (18.1 bits), Expect = 4.1e-27, Sum P(3) = 4.1e-27
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 25 MLELKRALDAKGHCLLEMPT-GTGKTIALL 53
+LEL++A+DA +++ PT GT +L+
Sbjct: 316 LLELEKAIDA---VVVDNPTDGTTYPASLM 342
>UNIPROTKB|Q29FS3 [details] [associations]
symbol:GA17940 "Regulator of telomere elongation helicase 1
homolog" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH379065 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001354453.2
GeneID:4814338 KEGG:dpo:Dpse_GA17940 FlyBase:FBgn0077949
InParanoid:Q29FS3 Uniprot:Q29FS3
Length = 1009
Score = 346 (126.9 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 84/280 (30%), Positives = 148/280 (52%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 454 IVNFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 511
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + F R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 512 QVYVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPMLNKC 571
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+EG+
Sbjct: 572 VDAWQASGLWADISCKKPIFVEPRGKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGL 631
Query: 609 DFDRHYGRLVIMFGVPFQYTLS-KILLARLEYLRDTFQIKEGDFLT------FDALRQAA 661
DF GR VI+ G+PF K++L R YL +T + KE L+ DA R
Sbjct: 632 DFADRNGRAVIITGLPFPPLKDPKVILKR-RYL-ETNRTKENQLLSGQEWYNLDATRAVN 689
Query: 662 QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHL 701
Q +GRVIR + DYG ++ D R+ + +L WI HL
Sbjct: 690 QAIGRVIRHRNDYGAILLCDSRFQDASQVQQLSKWIRGHL 729
Score = 185 (70.2 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 63/273 (23%), Positives = 119/273 (43%)
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
A + ++ L SR LC++ V+ + + C+ R S +TC F
Sbjct: 132 ANMRSVVLGSRDQLCIHPEVMKEQGNSNKVNLCKLRVHS------------KTCTFQLRV 179
Query: 162 E-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
E K P + ++DL G++ CPY+ ++ +V A++ Y YLLDPK
Sbjct: 180 ESKKDHPDFRGPSIMDIEDLVRVGQKLKMCPYYASKELVAQADITFMPYNYLLDPKARKA 239
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGR 280
E+ ++++ DEAHNI+ +C E+ SV +R + A +++ I + ++ +AG
Sbjct: 240 NKIELGN-TIIILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKVFTSGESQEAGG 298
Query: 281 -----LRAEYNRLVEGLALRGNLPIADAWLSNPA----LPSDILKEAV-PGNIR--RAEH 328
+ L++ + L I + NP P+ ++ E + N
Sbjct: 299 DEPKDFTLDDLTLLKEMLLELEKAIDAVVVDNPTDGTTYPASLMYELLGKANFTYGNCAT 358
Query: 329 FLHVLRRLVQYLRGRLETENVEKEGPVSFVASI 361
+ +L +LVQYL + + K G + ++ +
Sbjct: 359 IVALLDKLVQYLMVASQHMTIRKGGTFTMLSDL 391
Score = 83 (34.3 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 23/73 (31%), Positives = 41/73 (56%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-EN 66
+ V+FP++ Y Q YM ++ L + +LE PTGTGKT++LL +++ ++ E+
Sbjct: 9 IPVHFPFEP-YNVQRDYMEKVIICLRDGTNGVLESPTGTGKTLSLLCASLAWIRTRQSEH 67
Query: 67 PVKLIYCTRTVHE 79
++I T E
Sbjct: 68 QQQMIKLKATSKE 80
Score = 66 (28.3 bits), Expect = 1.6e-33, Sum P(4) = 1.6e-33
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK +T + A + ++ L SR LC++ V+ +
Sbjct: 108 KVIYASRTHSQLNQAMRELK-----RTAY----ANMRSVVLGSRDQLCIHPEVMKEQGNS 158
Query: 129 SVDAACRKRTAS 140
+ C+ R S
Sbjct: 159 NKVNLCKLRVHS 170
Score = 45 (20.9 bits), Expect = 8.3e-27, Sum P(3) = 8.3e-27
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 47 GKTIALLSLITSYVLSKPENPVKLIYCTRTVH----EMEKTLAELKLLHNYQTRHLGPAA 102
G T +LS + + V + EN + ++ + VH E K + Q LG
Sbjct: 382 GGTFTMLSDLLTIVFANKENIMSKVHLSFKVHVQVEESNKQQGKSGATQGKQQGWLGKG- 440
Query: 103 KILAIGLSSRKNLCVN 118
I G SS+ VN
Sbjct: 441 NITTTGTSSKAAKIVN 456
Score = 38 (18.4 bits), Expect = 1.6e-33, Sum P(4) = 1.6e-33
Identities = 6/6 (100%), Positives = 6/6 (100%)
Query: 184 GKQQGW 189
GKQQGW
Sbjct: 431 GKQQGW 436
Score = 38 (18.4 bits), Expect = 7.6e-31, Sum P(3) = 7.6e-31
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 259 ATRNLSRINQEIERFKATDAGRLRA 283
A+R S++NQ + K T +R+
Sbjct: 112 ASRTHSQLNQAMRELKRTAYANMRS 136
Score = 37 (18.1 bits), Expect = 8.3e-27, Sum P(3) = 8.3e-27
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 25 MLELKRALDAKGHCLLEMPT-GTGKTIALL 53
+LEL++A+DA +++ PT GT +L+
Sbjct: 316 LLELEKAIDA---VVVDNPTDGTTYPASLM 342
>UNIPROTKB|B4M891 [details] [associations]
symbol:GJ16649 "Regulator of telomere elongation helicase 1
homolog" species:7244 "Drosophila virilis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 EMBL:CH940653 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
RefSeq:XP_002056881.1 EnsemblMetazoa:FBtr0232574 GeneID:6633257
KEGG:dvi:Dvir_GJ16649 FlyBase:FBgn0203833 InParanoid:B4M891
Uniprot:B4M891
Length = 1005
Score = 338 (124.0 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 83/280 (29%), Positives = 146/280 (52%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + +SV++TSGTL+P L P + V++ + + R
Sbjct: 453 IINFWCFNPGFGMEQLLNAHVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDRS 510
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 511 QVYVKIIGTGPDREQLISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQC 570
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GA F +V RGKV+EG+
Sbjct: 571 VDAWQASGLWADISCRKPIFLEPRGKDQFTSTMEEFYQAIRDSKGACFMAVCRGKVSEGL 630
Query: 609 DFDRHYGRLVIMFGVPFQYTLS-KILLARLEYLRDTFQIKEGDFLT------FDALRQAA 661
DF GR VI+ G+PF K++L R YL +T + KE L+ DA R
Sbjct: 631 DFADRNGRAVIITGLPFPPLKDPKVVLKR-RYL-ETNRTKENQLLSGQEWYNLDATRAVN 688
Query: 662 QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHL 701
Q +GRVIR + DYG ++ D R+ + +L WI HL
Sbjct: 689 QAIGRVIRHRNDYGAILLCDARFQDMSQVQQLSKWIRGHL 728
Score = 187 (70.9 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 50/179 (27%), Positives = 84/179 (46%)
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
A + ++ L SR LC++ V+ + + C+ + V A +TC F
Sbjct: 131 ANMKSVVLGSRDQLCIHPDVMREQGNSNKVNMCKLK----VHA--------KTCSFQLRV 178
Query: 162 E-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
E K P + ++DL G++ CPYF ++ +V A++ Y YLLDPK
Sbjct: 179 ESKKDHPDFRGPSIMDIEDLVKVGQRLKMCPYFASKELVNGADITFMPYNYLLDPKARKA 238
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAG 279
E+ ++V+ DEAHNI+ +C E+ SV +R + A +++ I + A D G
Sbjct: 239 NKIELSN-TIVILDEAHNIEKICEESASVQIRSSDVAMAIEDITHIMKIFTSGDAQDTG 296
Score = 85 (35.0 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 19/56 (33%), Positives = 35/56 (62%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK 63
+ V+FP++ Y Q +YM ++ L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YEVQRAYMEKVIMCLRDGTNGVLESPTGTGKTLSLLCASLAWIRTR 63
Score = 66 (28.3 bits), Expect = 8.9e-29, Sum P(2) = 8.9e-29
Identities = 32/119 (26%), Positives = 56/119 (47%)
Query: 20 EQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPEN---PVKLIYCTRT 76
EQ YM +L+ LD + + G G +A L+ V+ K N P K+IY +RT
Sbjct: 66 EQQQYMQKLQ--LDQQK----QATGGAGAGVADLNA----VMGKANNWGVP-KVIYASRT 114
Query: 77 VHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACR 135
++ + + ELK +T + A + ++ L SR LC++ V+ + + C+
Sbjct: 115 HSQLSQAMRELK-----RTAY----ANMKSVVLGSRDQLCIHPDVMREQGNSNKVNMCK 164
>DICTYBASE|DDB_G0286621 [details] [associations]
symbol:fncJ "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR002464
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 dictyBase:DDB_G0286621 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677
EMBL:AAFI02000089 GO:GO:0004003 GO:GO:0006302 InterPro:IPR014001
SMART:SM00487 eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K15362
RefSeq:XP_637574.1 ProteinModelPortal:Q54LI7
EnsemblProtists:DDB0232367 GeneID:8625714 KEGG:ddi:DDB_G0286621
InParanoid:Q54LI7 Uniprot:Q54LI7
Length = 1078
Score = 349 (127.9 bits), Expect = 1.4e-45, Sum P(3) = 1.4e-45
Identities = 86/281 (30%), Positives = 150/281 (53%)
Query: 442 LAVKPVFDRFQSVVITSGTLSPIDLYP-RLLNFHPVVSRSFKMSLTRDCICPMVLTRGSD 500
+A + +SVV+TSGTLSP+ +P L P+ + + L+ G
Sbjct: 792 IAFSSLVQATRSVVLTSGTLSPLYSFPMELAAKFPISAEMGNLPDIAQRAWIGTLSHGVK 851
Query: 501 QLPVSTKFDMRSDPGVARNY----GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
TK P ++ G+ +++ + ++P G++CFF SY +++++++ W+++G
Sbjct: 852 ----GTKLICTHGPSEGLDFQDSLGETILQHIELIPSGVLCFFPSYGFLEKLLSRWDETG 907
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNYRKACDC--GRGAVFFSVARGKVAEGIDFDRHY 614
ILK+I K F E ++ E LDNYR+ +GA+ F+V RGKV+EGIDF Y
Sbjct: 908 ILKKINAKKRYFYEPKNQREFIETLDNYREEIKQRPNKGAILFAVCRGKVSEGIDFSDEY 967
Query: 615 GRLVIMFGVPFQYTLSKILLARLEYLRDTFQ--IKEGDFLTFDALRQAAQCVGRVIRSKA 672
R VI+ G+P+ + ++ + E+ DT + I GD+ A R Q +GR IR K
Sbjct: 968 ARGVIVVGIPYPSLVDLRIVLKKEH-NDTNKKGISGGDWYKLQAYRALNQALGRCIRHKN 1026
Query: 673 DYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMA 713
DYG ++ D+R+++ + L W S +++ + NL+T ++
Sbjct: 1027 DYGSILLIDERFTQMGNWNSLSKWTRSCIKN-NRNLNTSLS 1066
Score = 148 (57.2 bits), Expect = 1.4e-45, Sum P(3) = 1.4e-45
Identities = 27/75 (36%), Positives = 48/75 (64%)
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
V+ ++DL G+ CPYF +R M++ A+++ Y YL+DP++ + ++ S+V+F
Sbjct: 514 VWDIEDLMEAGQAHSECPYFASRDMIEKADLIFCPYNYLIDPQIRKSFADKVAG-SIVIF 572
Query: 234 DEAHNIDNVCIEALS 248
DEAHNI++ +E S
Sbjct: 573 DEAHNIEDALMETSS 587
Score = 113 (44.8 bits), Expect = 1.4e-45, Sum P(3) = 1.4e-45
Identities = 37/114 (32%), Positives = 56/114 (49%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVL 61
++K+ + V FP+ Y Q S M + LD+K +C+LE PTGTGKT LSL+ S +
Sbjct: 190 VYKIGNYKVKFPFKP-YACQASMMSRILEGLDSKENCILESPTGTGKT---LSLLCSSLA 245
Query: 62 SKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNL 115
+ EN K R + E K + K + + L AA + ++ NL
Sbjct: 246 WQEENKKKN---QRDLEEKRKLALDSKQ-RMIEKKQLIDAAAAASAASNTTSNL 295
Score = 43 (20.2 bits), Expect = 2.7e-38, Sum P(3) = 2.7e-38
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVN 118
K ++P + +C+RT ++++ ELK +T + P +LA SR C+N
Sbjct: 423 KKKSPT-IFFCSRTHSQIKQLTGELK-----KTPYR-PNMVVLA----SRDQYCIN 467
Score = 41 (19.5 bits), Expect = 4.3e-38, Sum P(3) = 4.3e-38
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACRKRTAS 140
L ++ L ++S+ E + +DAA AS
Sbjct: 258 LEEKRKLALDSKQRMIEKKQLIDAAAAASAAS 289
>UNIPROTKB|B0W9F4 [details] [associations]
symbol:CPIJ003765 "Regulator of telomere elongation
helicase 1 homolog" species:7176 "Culex quinquefasciatus"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010569 "regulation of double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000007558 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
EMBL:DS231864 RefSeq:XP_001845338.1 ProteinModelPortal:B0W9F4
EnsemblMetazoa:CPIJ003765-RA GeneID:6035102
KEGG:cqu:CpipJ_CPIJ003765 VectorBase:CPIJ003765 PhylomeDB:B0W9F4
Uniprot:B0W9F4
Length = 978
Score = 348 (127.6 bits), Expect = 1.7e-45, Sum P(4) = 1.7e-45
Identities = 87/303 (28%), Positives = 154/303 (50%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCI 490
V+ C + ++ + R +S+++TSGTL+P+ L+ V + +
Sbjct: 463 VINFWCFNPGFGMRQLLGRNARSIILTSGTLAPLKPLISELDIPIAVKLENPHIIDGSQV 522
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
C ++ +G D+ +++ + R +P + G+ ++ I+P G++ FF SY +++
Sbjct: 523 CVKIVGQGPDKESLNSSYGNRDNPKYISSLGRTILSFCPIIPGGLLVFFPSYPLLNKCQE 582
Query: 551 TWNDSGILKEIMQHKLVFIETQ--DVVETTLALDNYRKACDC-GRGAVFFSVARGKVAEG 607
W ++GI +I + K +F+E + D T+ + Y K D G+GAVF +V RGKV+EG
Sbjct: 583 AWQETGIWAQISRTKPIFVEPRGKDQFLNTMT-EYYAKINDPDGKGAVFMAVCRGKVSEG 641
Query: 608 IDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTF----QIKEGD-FLTFDALRQAAQ 662
+DF GR I+ G+PF ++ + YL++ +I GD + + +A R Q
Sbjct: 642 LDFADMNGRACIITGLPFPPLKDARVILKKRYLQEVRTRENEIISGDEWYSLEAARAVNQ 701
Query: 663 CVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDA-HLNLSTDMALHIAREVG 721
+GRVIR K DYG ++ D R+ ++++L WI HL A H I RE+
Sbjct: 702 AIGRVIRHKNDYGAILLCDNRFHNPRQKAQLSSWIQKHLNTAQHPTFGP-----IVRELS 756
Query: 722 NFY 724
F+
Sbjct: 757 QFF 759
Score = 166 (63.5 bits), Expect = 1.7e-45, Sum P(4) = 1.7e-45
Identities = 41/147 (27%), Positives = 75/147 (51%)
Query: 106 AIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAA 165
A+ L SR LC++ V E C+ + + RA + + +E C+ E E
Sbjct: 149 AVILGSRDQLCIHPEVAKEEGNAVKTNLCKAKIQA--RACSFYS-RVEACK--ERPEITG 203
Query: 166 SAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEM 225
S + ++DL + CP+F+++ +++ A+V+ Y YLLDPK + E+
Sbjct: 204 ST------IMDIEDLVRVSTKLKACPFFMSKELIENADVLFMPYNYLLDPKARKANNLEL 257
Query: 226 QKESVVVFDEAHNIDNVCIEALSVSVR 252
++++ DEAHN+D +C E+ S+ +R
Sbjct: 258 AN-TIIILDEAHNVDKMCEESASMQIR 283
Score = 96 (38.9 bits), Expect = 1.7e-45, Sum P(4) = 1.7e-45
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + + V FP++ Y Q YM + L + +LE PTGTGKT++LL +++L
Sbjct: 4 YLINGIPVNFPFEP-YQVQRDYMARVIECLQNSSNGVLESPTGTGKTLSLLCSSLAWILH 62
Query: 63 K 63
K
Sbjct: 63 K 63
Score = 54 (24.1 bits), Expect = 6.0e-34, Sum P(4) = 6.0e-34
Identities = 21/88 (23%), Positives = 40/88 (45%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + E+K T + + A+ L SR LC++ V E
Sbjct: 121 KIIYASRTHSQLTQAMQEMK-----NTSY----GFMRAVILGSRDQLCIHPEVAKEEGNA 171
Query: 129 SVDAACRKRTASWVRALAAENPNIETCE 156
C+ + + RA + + +E C+
Sbjct: 172 VKTNLCKAKIQA--RACSFYS-RVEACK 196
Score = 41 (19.5 bits), Expect = 1.3e-32, Sum P(4) = 1.3e-32
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 259 ATRNLSRINQEIERFKATDAGRLRA 283
A+R S++ Q ++ K T G +RA
Sbjct: 125 ASRTHSQLTQAMQEMKNTSYGFMRA 149
Score = 38 (18.4 bits), Expect = 1.7e-45, Sum P(4) = 1.7e-45
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 294 LRGNLPIADAWLSNPAL-PS 312
+RGN AD W + L PS
Sbjct: 437 VRGNTKQADGWTATKQLVPS 456
>UNIPROTKB|Q9NZ71 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IMP] [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IMP] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=IMP]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 EMBL:CH471077 GO:GO:0046872
GO:GO:0003677 GO:GO:0006281 GO:GO:0051539 GO:GO:0004003
EMBL:AF217796 GO:GO:0000723 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 EMBL:AL353715 KO:K11136 CTD:51750
OrthoDB:EOG412M4Q EMBL:AF217795 EMBL:AB029011 EMBL:AK000485
EMBL:AK302508 EMBL:AK299332 EMBL:AK304798 EMBL:AL080127
IPI:IPI00219849 IPI:IPI00413900 IPI:IPI00718800 IPI:IPI00745153
IPI:IPI00929254 IPI:IPI00929311 IPI:IPI00929712 IPI:IPI00929751
PIR:T12516 PIR:T45294 RefSeq:NP_057518.1 RefSeq:NP_116575.3
UniGene:Hs.434878 ProteinModelPortal:Q9NZ71 SMR:Q9NZ71
IntAct:Q9NZ71 STRING:Q9NZ71 PhosphoSite:Q9NZ71 DMDM:229462743
PaxDb:Q9NZ71 PRIDE:Q9NZ71 GeneID:51750 KEGG:hsa:51750
UCSC:uc002yfu.2 UCSC:uc002yfx.1 UCSC:uc011abd.2 UCSC:uc021wge.1
GeneCards:GC20P062289 HGNC:HGNC:15888 MIM:608833 neXtProt:NX_Q9NZ71
PharmGKB:PA134915625 HOVERGEN:HBG108423 InParanoid:Q9NZ71
GenomeRNAi:51750 NextBio:55835 ArrayExpress:Q9NZ71 Bgee:Q9NZ71
Genevestigator:Q9NZ71 GermOnline:ENSG00000026036 Uniprot:Q9NZ71
Length = 1219
Score = 309 (113.8 bits), Expect = 2.7e-45, Sum P(3) = 2.7e-45
Identities = 84/285 (29%), Positives = 145/285 (50%)
Query: 452 QSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
+S+++TSGTL+P+ + + PV + + + + I V+ RG D +S+ FD
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHI-IDKHQIWVGVVPRGPDGAQLSSAFDR 531
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE 570
R + GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 532 RFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVE 591
Query: 571 TQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 592 PRSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPR 651
Query: 629 LSKILLARLEYLRDTFQIKEG---DFLTFDA-LRQAA-----QCVGRVIRSKADYGMMIF 679
+ ++ ++++L D + + G FL+ RQ A Q +GRVIR + DYG +
Sbjct: 652 MDPRVVLKMQFL-DEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFL 710
Query: 680 ADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREVGNFY 724
D R++ D R++LP W+ H+R + N H+ R+V F+
Sbjct: 711 CDHRFAFADARAQLPSWVRPHVR-VYDNFG-----HVIRDVAQFF 749
Score = 207 (77.9 bits), Expect = 2.7e-45, Sum P(3) = 2.7e-45
Identities = 59/206 (28%), Positives = 102/206 (49%)
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+T ++L + N + R+ K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 114 RTHSQLTQVIN-ELRNTSYRPKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS- 169
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q
Sbjct: 170 -----------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQ 218
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
A+++ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L
Sbjct: 219 ADIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASG-- 275
Query: 262 NLSRINQEIE-RFKATDAGRLRAEYN 286
L I+Q +E + KA G E++
Sbjct: 276 -LDVIDQVLEEQTKAAQQGEPHPEFS 300
Score = 97 (39.2 bits), Expect = 2.7e-45, Sum P(3) = 2.7e-45
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLL 53
Score = 71 (30.1 bits), Expect = 3.8e-31, Sum P(3) = 3.8e-31
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + EL+ N R P K+ +G SR+ LC++ V E+
Sbjct: 108 KIIYASRTHSQLTQVINELR---NTSYR---P--KVCVLG--SREQLCIHPEVKKQESNH 157
Query: 129 SVDAACRKRTAS 140
CRK+ AS
Sbjct: 158 LQIHLCRKKVAS 169
Score = 40 (19.1 bits), Expect = 9.2e-17, Sum P(3) = 9.2e-17
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 322 NIRRAEHFLHVLRRLVQYLR 341
++R ++F HV+R + Q+ R
Sbjct: 731 HVRVYDNFGHVIRDVAQFFR 750
>UNIPROTKB|F6WH68 [details] [associations]
symbol:RTEL1 "Protein RTEL1-TNFRSF6B" species:9606 "Homo
sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 EMBL:AL121845
TIGRFAMs:TIGR00604 EMBL:AL353715 HGNC:HGNC:15888 OMA:VLKMQFL
HGNC:HGNC:44095 IPI:IPI01021192 SMR:F6WH68 Ensembl:ENST00000318100
Ensembl:ENST00000482936 Uniprot:F6WH68
Length = 1400
Score = 309 (113.8 bits), Expect = 5.0e-45, Sum P(3) = 5.0e-45
Identities = 84/285 (29%), Positives = 145/285 (50%)
Query: 452 QSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
+S+++TSGTL+P+ + + PV + + + + I V+ RG D +S+ FD
Sbjct: 473 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHI-IDKHQIWVGVVPRGPDGAQLSSAFDR 531
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE 570
R + GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 532 RFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVE 591
Query: 571 TQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 592 PRSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPR 651
Query: 629 LSKILLARLEYLRDTFQIKEG---DFLTFDA-LRQAA-----QCVGRVIRSKADYGMMIF 679
+ ++ ++++L D + + G FL+ RQ A Q +GRVIR + DYG +
Sbjct: 652 MDPRVVLKMQFL-DEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFL 710
Query: 680 ADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREVGNFY 724
D R++ D R++LP W+ H+R + N H+ R+V F+
Sbjct: 711 CDHRFAFADARAQLPSWVRPHVR-VYDNFG-----HVIRDVAQFF 749
Score = 207 (77.9 bits), Expect = 5.0e-45, Sum P(3) = 5.0e-45
Identities = 59/206 (28%), Positives = 102/206 (49%)
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+T ++L + N + R+ K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 114 RTHSQLTQVIN-ELRNTSYRPKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS- 169
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q
Sbjct: 170 -----------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQ 218
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
A+++ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L
Sbjct: 219 ADIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASG-- 275
Query: 262 NLSRINQEIE-RFKATDAGRLRAEYN 286
L I+Q +E + KA G E++
Sbjct: 276 -LDVIDQVLEEQTKAAQQGEPHPEFS 300
Score = 97 (39.2 bits), Expect = 5.0e-45, Sum P(3) = 5.0e-45
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLL 53
Score = 71 (30.1 bits), Expect = 6.9e-31, Sum P(3) = 6.9e-31
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + EL+ N R P K+ +G SR+ LC++ V E+
Sbjct: 108 KIIYASRTHSQLTQVINELR---NTSYR---P--KVCVLG--SREQLCIHPEVKKQESNH 157
Query: 129 SVDAACRKRTAS 140
CRK+ AS
Sbjct: 158 LQIHLCRKKVAS 169
Score = 40 (19.1 bits), Expect = 1.5e-16, Sum P(3) = 1.5e-16
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 322 NIRRAEHFLHVLRRLVQYLR 341
++R ++F HV+R + Q+ R
Sbjct: 731 HVRVYDNFGHVIRDVAQFFR 750
>UNIPROTKB|B4NDG5 [details] [associations]
symbol:GK24923 "Regulator of telomere elongation helicase 1
homolog" species:7260 "Drosophila willistoni" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 EMBL:CH964239 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD OrthoDB:EOG4S4MX7
RefSeq:XP_002071885.1 STRING:B4NDG5 EnsemblMetazoa:FBtr0255574
GeneID:6648559 KEGG:dwi:Dwil_GK24923 FlyBase:FBgn0226882
InParanoid:B4NDG5 Uniprot:B4NDG5
Length = 998
Score = 343 (125.8 bits), Expect = 5.6e-45, Sum P(3) = 5.6e-45
Identities = 83/280 (29%), Positives = 147/280 (52%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
V+ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 459 VINFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 516
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + F R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 517 QVYVKIIGTGPDRQQLISNFKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNKC 576
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GA F +V RGKV+EG+
Sbjct: 577 VDAWQTSGLWADIAAKKPIFLEPRGKDQFTTTMEEFYQAIRDSKGACFMAVCRGKVSEGL 636
Query: 609 DFDRHYGRLVIMFGVPFQYTLS-KILLARLEYLRDTFQIKEGDFLT------FDALRQAA 661
DF GR VI+ G+P+ K++L R YL + + KE LT DA R
Sbjct: 637 DFADRNGRAVIITGLPYPPLKDPKVILKR-RYL-EANRTKENQLLTGQEWYNLDATRAVN 694
Query: 662 QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHL 701
Q +GRVIR + DYG ++ D R+ + + +L WI HL
Sbjct: 695 QAIGRVIRHRHDYGAILLCDSRFQDNSQVQQLSKWIRGHL 734
Score = 179 (68.1 bits), Expect = 5.6e-45, Sum P(3) = 5.6e-45
Identities = 46/166 (27%), Positives = 80/166 (48%)
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
A + ++ L SR LC++ V+ + + C+ R S +TC F
Sbjct: 134 AGMRSVVLGSRDQLCIHPEVMREQGNSNKVNMCKMRVHS------------KTCSFQLRV 181
Query: 162 E-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
E K P + ++DL G++ CPYF ++ +V A++ Y YLLDP +A
Sbjct: 182 ESKKDHPDFRGPSIMDIEDLVKVGQKLKMCPYFASKELVNDADITFMPYNYLLDP-MARK 240
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
+K ++V+ DEAHNI+ +C E+ SV ++ + A +++ I
Sbjct: 241 ANKIELSNTIVILDEAHNIEKICEESASVQIKSSDVAVAIEDVTHI 286
Score = 81 (33.6 bits), Expect = 5.6e-45, Sum P(3) = 5.6e-45
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENP 67
+ V+FP++ Y Q ++M ++ L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YEVQRAFMEKVIICLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQSEQ 67
Query: 68 VKLI 71
K I
Sbjct: 68 QKQI 71
Score = 63 (27.2 bits), Expect = 6.6e-33, Sum P(3) = 6.6e-33
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK ++ + G + ++ L SR LC++ V+ +
Sbjct: 110 KVIYASRTHSQLTQAMRELK-----RSAYAG----MRSVVLGSRDQLCIHPEVMREQGNS 160
Query: 129 SVDAACRKRTAS 140
+ C+ R S
Sbjct: 161 NKVNMCKMRVHS 172
>UNIPROTKB|B4L1Z2 [details] [associations]
symbol:GI15901 "Regulator of telomere elongation helicase 1
homolog" species:7230 "Drosophila mojavensis" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 TIGRFAMs:TIGR00604
EMBL:CH933810 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_002010396.1
EnsemblMetazoa:FBtr0166626 GeneID:6584754 KEGG:dmo:Dmoj_GI15901
FlyBase:FBgn0138650 InParanoid:B4L1Z2 Uniprot:B4L1Z2
Length = 1014
Score = 337 (123.7 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
Identities = 81/280 (28%), Positives = 147/280 (52%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 454 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 511
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 512 QVYVKIIGTGPDREQLISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQC 571
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ ++ K +F+E + + T ++ + +A +GA F +V RGKV+EG+
Sbjct: 572 VDAWQASGLWADLSSRKPIFLEPRGKDQFTSTMEEFYQAIRDSKGACFMAVCRGKVSEGL 631
Query: 609 DFDRHYGRLVIMFGVPFQYTLS-KILLARLEYLRDTFQIKEGDFLT------FDALRQAA 661
DF GR VI+ G+PF K++L R YL +T + KE L+ DA R
Sbjct: 632 DFADRNGRAVIITGLPFPPLKDPKVILKR-RYL-ETNRTKENQLLSGQEWYNLDATRAVN 689
Query: 662 QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHL 701
Q +GRVIR + DYG ++ D R+ + +L WI HL
Sbjct: 690 QAIGRVIRHRHDYGAILLCDARFQDASQVQQLSKWIRGHL 729
Score = 184 (69.8 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
Identities = 56/233 (24%), Positives = 103/233 (44%)
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
A + ++ L SR LC++ V+ + + C+ + V A +TC F
Sbjct: 133 ASMRSVVLGSRDQLCIHPDVMKEQGNSNKVNMCKLK----VHA--------KTCSFQLRV 180
Query: 162 E-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
E K P + ++DL G++ CPY+ ++ +V A++ Y YLLDPK
Sbjct: 181 ESKKDHPDFRGPSIMDIEDLVKVGQRLKMCPYYASKELVSSADITFMPYNYLLDPKARKA 240
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGR 280
E+ ++V+ DEAHNI+ +C E+ SV +R + A +++ I + + D+G
Sbjct: 241 NKIELSN-TIVILDEAHNIEKICEESASVQIRSSDVAMAIEDVTHIMKIFTSADSQDSGG 299
Query: 281 LRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVL 333
+ ++ L L + + A+ +++ V G A H +L
Sbjct: 300 PEEPKDFTLDDLTLLKEMLLE----LEKAIDGVVVENQVEGTTYPAAHIYELL 348
Score = 80 (33.2 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK 63
+ V+FP++ Y Q ++M ++ L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YEVQRAFMEKVIMCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63
Score = 61 (26.5 bits), Expect = 4.0e-28, Sum P(2) = 4.0e-28
Identities = 25/95 (26%), Positives = 45/95 (47%)
Query: 44 TGTGKTIALLSLITSYVLSKPEN---PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGP 100
TG T A+ L + + K N P K+IY +RT ++ + + ELK +T +
Sbjct: 84 TGGSATGAISDL--ALTMGKANNWGVP-KVIYASRTHSQLTQAMRELK-----RTAY--- 132
Query: 101 AAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACR 135
A + ++ L SR LC++ V+ + + C+
Sbjct: 133 -ASMRSVVLGSRDQLCIHPDVMKEQGNSNKVNMCK 166
Score = 40 (19.1 bits), Expect = 7.4e-13, Sum P(3) = 7.4e-13
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 624 PFQYTLSKILLARLEYLRDTFQIKEGD-FLTF 654
P +Y L + +R ++LR+ + + D F +F
Sbjct: 923 PAEYPLKEAPESRADFLREVRSVVDSDKFRSF 954
>UNIPROTKB|B3MSG8 [details] [associations]
symbol:GF20802 "Regulator of telomere elongation helicase 1
homolog" species:7217 "Drosophila ananassae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
EMBL:CH902622 KO:K11136 OrthoDB:EOG4S4MX7 RefSeq:XP_001964274.1
EnsemblMetazoa:FBtr0125502 GeneID:6503494 KEGG:dan:Dana_GF20802
FlyBase:FBgn0097808 InParanoid:B3MSG8 Uniprot:B3MSG8
Length = 994
Score = 339 (124.4 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 79/281 (28%), Positives = 147/281 (52%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 453 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 510
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ P+ + + R +P + G+ ++ + +VPDG++ FF SY +++
Sbjct: 511 QVYVKIIGTGPDRQPLISNYTNRDNPKYISSLGQTILNVSRLVPDGLLVFFPSYPMLNKC 570
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GA F +V RGKV+EG+
Sbjct: 571 VDAWQASGLWADIASKKPIFLEPRGKDQFTSTMEEFYQAIRDSKGACFMAVCRGKVSEGL 630
Query: 609 DFDRHYGRLVIMFGVPFQYTLS-KILLARLEYL-----RDTFQIKEGDFLTFDALRQAAQ 662
DF GR VI+ G+PF K++L R YL R+ + ++ +A R Q
Sbjct: 631 DFADRNGRAVIITGLPFPPLKDPKVILKR-RYLESNRTRENQLLSGNEWYNLEATRAVNQ 689
Query: 663 CVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRD 703
+GRVIR + DYG ++ D R+ + +L WI HL D
Sbjct: 690 AIGRVIRHRNDYGAILLCDSRFKDAAQVQQLSKWIRGHLGD 730
Score = 165 (63.1 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 44/162 (27%), Positives = 75/162 (46%)
Query: 106 AIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYE-KA 164
++ L SR LC++ V + C+ R S +TC F E K
Sbjct: 136 SVVLGSRDQLCIHPEVSREVGNSNKVNMCKLRVHS------------KTCTFQLRVESKK 183
Query: 165 ASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKE 224
P + ++DL G++ CPY+ ++ +V A++ Y YLLDPK E
Sbjct: 184 DHPDFRGPSIMDIEDLIKVGQKLKMCPYYASKELVPQADITFMPYNYLLDPKARKANKIE 243
Query: 225 MQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
+ ++V+ DEAHNI+ +C E+ SV ++ + A +++ I
Sbjct: 244 LGN-TIVILDEAHNIEKICEESASVQIKSSDVAIAIEDVTHI 284
Score = 95 (38.5 bits), Expect = 1.6e-44, Sum P(3) = 1.6e-44
Identities = 20/56 (35%), Positives = 37/56 (66%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK 63
+ V+FP++ YP Q +YM ++ + L + +LE PTGTGKT++LL +++ ++
Sbjct: 9 IPVHFPFEP-YPVQRAYMEKVIQCLKDGTNGVLESPTGTGKTLSLLCSSLAWIRTR 63
Score = 54 (24.1 bits), Expect = 5.5e-33, Sum P(3) = 5.5e-33
Identities = 18/72 (25%), Positives = 34/72 (47%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK +T + + + ++ L SR LC++ V
Sbjct: 108 KVIYASRTHSQLTQAMRELK-----RTAY----SNMRSVVLGSRDQLCIHPEVSREVGNS 158
Query: 129 SVDAACRKRTAS 140
+ C+ R S
Sbjct: 159 NKVNMCKLRVHS 170
>UNIPROTKB|Q5RE34 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9601 "Pongo abelii" [GO:0000723 "telomere maintenance"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0010569 "regulation of double-strand
break repair via homologous recombination" evidence=ISS]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0000723
GO:GO:0010569 TIGRFAMs:TIGR00604 KO:K11136 CTD:51750 EMBL:CR857704
RefSeq:NP_001124929.1 UniGene:Pab.2365 ProteinModelPortal:Q5RE34
GeneID:100171800 KEGG:pon:100171800 Uniprot:Q5RE34
Length = 1302
Score = 314 (115.6 bits), Expect = 2.3e-44, Sum P(3) = 2.3e-44
Identities = 88/306 (28%), Positives = 153/306 (50%)
Query: 432 VLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDC 489
VL C L+++ + + +S+++TSGTL+P+ + + PV + + + +
Sbjct: 453 VLSYWCFSPGLSMRELVRQGVRSLILTSGTLAPVSSFALEMQIPFPVCLENPHI-IDKHQ 511
Query: 490 ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
I V+ RG D +S+ FD R + GK L +VP G++ FF SY M++ +
Sbjct: 512 IWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNTARVVPCGLLIFFPSYPVMEKSL 571
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEG 607
W + +++ K +F+E + + + Y R A GA F +V RGK +EG
Sbjct: 572 EFWRARDLARKMEALKPLFVEPRSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEG 631
Query: 608 IDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEG---DFLTFDA-LRQAA-- 661
+DF GR VI+ G+P+ + ++ ++++L D + + G FL+ RQ A
Sbjct: 632 LDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFL-DEMKGQGGAGGQFLSGQEWYRQQASR 690
Query: 662 ---QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
Q +GRVIR + DYG + D R++ D R++LP W+ H+R + N H+ R
Sbjct: 691 AVNQAIGRVIRHRQDYGAVFLCDHRFAFADARAQLPSWVRPHVR-VYDNFG-----HVIR 744
Query: 719 EVGNFY 724
+V F+
Sbjct: 745 DVAQFF 750
Score = 203 (76.5 bits), Expect = 2.3e-44, Sum P(3) = 2.3e-44
Identities = 58/206 (28%), Positives = 101/206 (49%)
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+T ++L + N + R+ K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 115 RTHSQLTQVIN-ELRNTSYRPKVCVLG--SREQLCIHPEVKKQESNHIQIHLCRKKVAS- 170
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q
Sbjct: 171 -----------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQ 219
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
A+++ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L
Sbjct: 220 ADIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASG-- 276
Query: 262 NLSRINQEIE-RFKATDAGRLRAEYN 286
L I+Q +E + K G E++
Sbjct: 277 -LDIIDQVLEEQTKTAQQGEPHPEFS 301
Score = 88 (36.0 bits), Expect = 2.3e-44, Sum P(3) = 2.3e-44
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
L VTV FP+ Y Q YM ++ L K + +LE TGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESHTGTGKTLCLL 53
Score = 71 (30.1 bits), Expect = 1.2e-30, Sum P(3) = 1.2e-30
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + EL+ N R P K+ +G SR+ LC++ V E+
Sbjct: 109 KIIYASRTHSQLTQVINELR---NTSYR---P--KVCVLG--SREQLCIHPEVKKQESNH 158
Query: 129 SVDAACRKRTAS 140
CRK+ AS
Sbjct: 159 IQIHLCRKKVAS 170
Score = 40 (19.1 bits), Expect = 2.6e-15, Sum P(3) = 2.6e-15
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 322 NIRRAEHFLHVLRRLVQYLR 341
++R ++F HV+R + Q+ R
Sbjct: 732 HVRVYDNFGHVIRDVAQFFR 751
>UNIPROTKB|E2RLA6 [details] [associations]
symbol:RTEL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 OMA:VLKMQFL EMBL:AAEX03014162
EMBL:AAEX03014163 Ensembl:ENSCAFT00000020689 Uniprot:E2RLA6
Length = 1232
Score = 318 (117.0 bits), Expect = 4.2e-44, Sum P(2) = 4.2e-44
Identities = 81/286 (28%), Positives = 144/286 (50%)
Query: 429 PDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLT 486
P VL C +++ + + ++V++TSGTL+P+ + + PV + + +
Sbjct: 448 PGKVLSYWCFSPGHSMRQLVQQGVRTVILTSGTLAPVSSFALEMQIPFPVCLENPHV-IH 506
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ I +++RG D +S+ FD R + GK L + +VP G++ FF SY ++
Sbjct: 507 QQQIWVGIVSRGPDGAQLSSAFDKRFSEACLSSLGKALGNIARVVPHGLLVFFPSYPVLE 566
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKV 604
+ W ++ K VF+E ++ + +D Y R AC GA F +V RGK
Sbjct: 567 RSLQFWRTHDSAGKLEALKPVFVEPRNKGGFSEVVDAYYARVACPGSTGATFLAVCRGKA 626
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTF-------QIKEG-DFLTFDA 656
+EG+DF GR VI+ G+P+ + ++ ++++L + Q+ G ++ A
Sbjct: 627 SEGLDFADMNGRGVIITGLPYPPRMDPRVVLKMQFLDEIKNHRGPGGQLLSGHEWYRQQA 686
Query: 657 LRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR 702
R Q +GRVIR + DYG + D R++ D R++LP W+ H+R
Sbjct: 687 SRAVNQAIGRVIRHRHDYGAIFLCDHRFAHVDARAQLPSWVRPHVR 732
Score = 236 (88.1 bits), Expect = 4.2e-44, Sum P(2) = 4.2e-44
Identities = 84/311 (27%), Positives = 143/311 (45%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
L V V FP++ Y Q YM ++ L + + +LE PTGTGKT+ LL ++
Sbjct: 6 LNGVAVDFPFEP-YKCQEEYMSKVLECLQKRVNGILESPTGTGKTLCLLCSTLAWREHLR 64
Query: 60 -VLSKPENPVKL---IYCTRTVHEMEKTLAEL----------KLLHNYQT--------RH 97
+S + ++ ++ RT+ A+ K+++ +T R
Sbjct: 65 DAISAHKIAERVQGELFLDRTLSSWGDAAADAGAAACYADIPKIIYASRTHSQLTQVIRE 124
Query: 98 L-GPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCE 156
L + + L SR+ LC++ V E+ CRK+ AS +C
Sbjct: 125 LRNTSYRPRVCVLGSREQLCIHPEVKKQESNHMQIHLCRKKVAS------------RSCH 172
Query: 157 FFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK 216
F+ N E+ + L + ++DL G + CPY+L+R++ Q A+++ Y YLLD K
Sbjct: 173 FYNNVEEKSLEQELATPILDIEDLVKSGNKHKLCPYYLSRNLKQQADIIFMPYNYLLDTK 232
Query: 217 VAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE-RFKA 275
S ++ K +VV+FDEAHN++ +C E S + T L ++Q +E + KA
Sbjct: 233 SRRAHSIDL-KGTVVIFDEAHNVEKMCEETASFDL---TPHDVASGLDVLDQVLEEQTKA 288
Query: 276 TDAGRLRAEYN 286
LR+E++
Sbjct: 289 AQQDELRSEFS 299
>FB|FBgn0026876 [details] [associations]
symbol:CG11403 species:7227 "Drosophila melanogaster"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006289 "nucleotide-excision repair" evidence=ISS] [GO:0004386
"helicase activity" evidence=ISS] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
EMBL:AE014298 GO:GO:0006200 GO:GO:0004003 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199 KO:K11273
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 EMBL:AL121806 EMBL:AY058540
RefSeq:NP_569898.1 UniGene:Dm.4169 SMR:Q9XZS9 STRING:Q9XZS9
EnsemblMetazoa:FBtr0070245 GeneID:31072 KEGG:dme:Dmel_CG11403
UCSC:CG11403-RA FlyBase:FBgn0026876 InParanoid:Q9XZS9
OrthoDB:EOG4Q83CB GenomeRNAi:31072 NextBio:771801 Uniprot:Q9XZS9
Length = 861
Score = 346 (126.9 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 84/260 (32%), Positives = 131/260 (50%)
Query: 452 QSVVITSGTLSPI-DLYPRLLN-FHP-VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKF 508
+++VI GT+ P +L +L H +V R + + D I P V++ G P+S KF
Sbjct: 584 RAIVIAGGTMQPTKELKEQLFTGCHDRLVERFYNHVVANDAILPFVISNGPSGAPLSFKF 643
Query: 509 DMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVF 568
R + R +L + +VP G+VCF SY Y+D++ SG L+ I K VF
Sbjct: 644 AHRGSAEMLRELSMILRNLCQVVPGGVVCFLPSYEYLDKVYKYLEQSGTLETISGRKSVF 703
Query: 569 IETQDVVETTLALDNYRKACD--CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626
E E L DNY A GA+ SV GK++EG++F GR V++ G+P+
Sbjct: 704 REVSGSAEQLL--DNYALAIKRPASYGALLLSVVGGKLSEGLNFADDLGRAVLVVGLPYS 761
Query: 627 YTLSKILLARLEYLRDTFQIKEG-DFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYS 685
+LS L R+++L + G ++ ++ QC+GR +R DY + DKR++
Sbjct: 762 NSLSPELRQRMQHLDEKLGPGAGNEYYENLCVKAVNQCIGRAVRHIKDYACVYLLDKRFA 821
Query: 686 RHDKRSKLPGWILSHLRDAH 705
R KLP WI H+ +A+
Sbjct: 822 DPKIRGKLPKWISRHIVEAN 841
Score = 160 (61.4 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 58/215 (26%), Positives = 98/215 (45%)
Query: 67 PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRV----- 121
PV++ +C+RT ++ + +AEL+ +T H G + + +++G SR+ LC N V
Sbjct: 187 PVQIFFCSRTHSQLAQIVAELR-----KTPH-GQSVRSISLG--SRQQLCGNPAVRKLKH 238
Query: 122 LAAENRDSVDAACRKR--TASWVRALAAENPNIETCEF--FENYEKAASAAVLPPGVYTL 177
+ N +D A +K S L AE N C F E A+ P +
Sbjct: 239 VGLMNERCLDMATKKARPNPSKKSRLTAE-AN-SRCPFKAASLVESLRDLALTEP--LDI 294
Query: 178 QDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAH 237
++L G G C Y+ +R V+ A +++ YQ LL + + K S+V+ DEAH
Sbjct: 295 EELANEGTACGGCSYYASRSAVEHAQLILLPYQLLLQKSARNQLGISL-KGSIVIVDEAH 353
Query: 238 NIDNVCIEALSVSVRRQTLEGATRNLSRINQEIER 272
N+ + + + RQ LE A +S ++
Sbjct: 354 NLLDSVAQLHGSEISRQQLERAKVQISGYKDHFQK 388
Score = 80 (33.2 bits), Expect = 1.3e-43, Sum P(3) = 1.3e-43
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI 71
FPY Y Q M EL + L+ + E PTGTGK++ L ++ L++ E V+
Sbjct: 20 FPYSP-YEIQEQLMQELFQVLERGQVGIFESPTGTGKSLTLTCGALTW-LARHEELVRTE 77
Query: 72 YCTRTVHEMEKTLAELK 88
R + +E+ LA+LK
Sbjct: 78 MLAR-IRGVEQELAKLK 93
Score = 49 (22.3 bits), Expect = 4.4e-32, Sum P(3) = 4.4e-32
Identities = 30/141 (21%), Positives = 60/141 (42%)
Query: 291 GLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVE 350
G++L+G++ I D ++ L S + ++ E + + + R T+N+
Sbjct: 339 GISLKGSIVIVDE--AHNLLDSVAQLHGSEISRQQLERAKVQISGYKDHFQKRFTTKNLL 396
Query: 351 KEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTY 410
K + F+ +DQ+ + S+M T E+T +F +I +C+
Sbjct: 397 KINQIIFIIRRLLKI-LDQR--KELQSNGCSMMRTYELTAEGDFFNID-LCELLDFCAR- 451
Query: 411 TRGFSIIIEPFDERMPHIPDP 431
TR F+ ++ +RM P P
Sbjct: 452 TR-FARKVQGRADRMEREPRP 471
>UNIPROTKB|A4K436 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0000723 "telomere maintenance" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0000723
GO:GO:0010569 eggNOG:COG1199 TIGRFAMs:TIGR00604
HOGENOM:HOG000007558 KO:K11136 EMBL:DQ323152 EMBL:DQ323153
EMBL:DQ420360 EMBL:DQ420361 EMBL:DQ420362 EMBL:DQ420363
IPI:IPI00840795 IPI:IPI00905335 IPI:IPI00930023 IPI:IPI00930030
IPI:IPI00930035 RefSeq:NP_001091044.1 UniGene:Bt.6256
ProteinModelPortal:A4K436 GeneID:505721 KEGG:bta:505721 CTD:51750
InParanoid:A4K434 OrthoDB:EOG412M4Q NextBio:20867282 Uniprot:A4K436
Length = 1216
Score = 315 (115.9 bits), Expect = 1.8e-43, Sum P(2) = 1.8e-43
Identities = 86/309 (27%), Positives = 156/309 (50%)
Query: 429 PDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLT 486
P VL C +++ + + +++++TSGTL+P+ + + PV + + +
Sbjct: 447 PGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQIPFPVCLENPHV-IN 505
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ I V+ +G D +S+ FD R + GK+L + +VP G++ FF SY M+
Sbjct: 506 QHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLVFFPSYPVME 565
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKV 604
+ + W +++ K +F+E + + ++ + R A GA+F +V RGK
Sbjct: 566 KSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPESSGAIFLAVCRGKA 625
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEG---DFLT-FDALRQA 660
+EG+DF GR VI+ G+P+ + +L ++++L D + + G FL+ D RQ
Sbjct: 626 SEGLDFADVNGRGVIVTGLPYPPRMDPRVLLKMQFL-DEMKAQSGAGGQFLSGHDWYRQQ 684
Query: 661 A-----QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALH 715
A Q +GRVIR + DYG + D R++ D R++LP W+ H++ D H
Sbjct: 685 ASRAVNQAIGRVIRHRHDYGAVFLCDHRFAHADTRAQLPSWVRPHVK------VYDSFGH 738
Query: 716 IAREVGNFY 724
+ R+V F+
Sbjct: 739 VIRDVAQFF 747
Score = 233 (87.1 bits), Expect = 1.8e-43, Sum P(2) = 1.8e-43
Identities = 77/298 (25%), Positives = 135/298 (45%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSY----- 59
L+ VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL ++
Sbjct: 6 LKGVTVDFPFQP-YKCQEEYMSKVLECLQEKVNGILESPTGTGKTLCLLCSTLAWREHLR 64
Query: 60 --VLSK--PENPVKLIYCTRTVHEMEKTLAELKLLHNY----QTRHLGPAAKILAIGLSS 111
V ++ E ++ RT+ + E + Y + + L +S
Sbjct: 65 DAVSARRIAERASGELFPDRTLASWGNAIPEGDVPACYTDIPKIIYASRTHSQLTQVISE 124
Query: 112 RKNLCVNSRVLAAENRDS--VDAACRKRTASWVRA-LAAENPNIETCEFFENYEKAASAA 168
+N RV +R+ + +K+ ++ ++ L +C F+ N E+ +
Sbjct: 125 LRNTSYRPRVCVLGSREQLCIHPEVKKQESNHMQVHLCRRKVASRSCHFYNNVEEKSLEQ 184
Query: 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
L + ++DL G + CPY+L+R++ Q A+++ Y YLLD K ++ K
Sbjct: 185 ELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHGIDL-KG 243
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYN 286
+VV+FDEAHN++ +C EA S + + + R+ +E R K L E++
Sbjct: 244 TVVIFDEAHNVEKMCEEAASFDLTPHDVASELDVIDRVLEE--RTKVAQQAELHPEFS 299
Score = 37 (18.1 bits), Expect = 5.3e-14, Sum P(2) = 5.3e-14
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGI 367
+++ + F HV+R + Q+ R +T + + P + S+ GI
Sbjct: 729 HVKVYDSFGHVIRDVAQFFRVAQKT--MPEPAPRAAAPSLGEGGGI 772
>ZFIN|ZDB-GENE-041114-191 [details] [associations]
symbol:ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box
helicase 11" species:7955 "Danio rerio" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-041114-191 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199
KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 HOVERGEN:HBG058884 OrthoDB:EOG4B5P4M CTD:1663
EMBL:BC085645 IPI:IPI00501779 RefSeq:NP_001007320.1
UniGene:Dr.37620 ProteinModelPortal:Q5U399 STRING:Q5U399
GeneID:492353 KEGG:dre:492353 InParanoid:Q5U399 NextBio:20864919
ArrayExpress:Q5U399 Uniprot:Q5U399
Length = 890
Score = 325 (119.5 bits), Expect = 4.2e-43, Sum P(3) = 4.2e-43
Identities = 86/295 (29%), Positives = 136/295 (46%)
Query: 423 ERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVS--RS 480
+R + L+ +A++ + ++V+I GT+ P+ + L F V+ R
Sbjct: 568 QRQACVAQSSLKFLLLNAAVHFAQILQECRAVIIAGGTMQPVADFKEQLLFSAGVTEERI 627
Query: 481 FKMS----LTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIV 536
+ S + + I P+VL G + F R P + G++L + +IVP G+V
Sbjct: 628 LEFSCGHVIPPENILPIVLCAGPSGQQLEFTFQTRDSPQMMEETGRVLSNLCNIVPGGVV 687
Query: 537 CFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACD-CGR--- 592
CFF SY Y I+ W +GIL+ + K +F E + + L Y K C
Sbjct: 688 CFFPSYEYEKRILGHWESTGILQRLQSKKKIFQEPKKASQVEQVLSEYSKCIQRCSNIGG 747
Query: 593 ---GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYL-RDTFQI-- 646
GA+ FSV GK++EGI+F GR ++M G+P+ S L ++ YL + +
Sbjct: 748 GQTGALLFSVVGGKMSEGINFSDDLGRCIVMVGMPYPNIKSPELQEKMAYLDKHMPHVAG 807
Query: 647 -KEGDFLTFDALRQAA-QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILS 699
G L +A Q +GR IR + DY ++ D RY+R KLP WI S
Sbjct: 808 KSPGKALVESLCMKAVNQSIGRAIRHRGDYACIVLCDHRYARTGTLQKLPEWIRS 862
Score = 174 (66.3 bits), Expect = 4.2e-43, Sum P(3) = 4.2e-43
Identities = 66/233 (28%), Positives = 111/233 (47%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E+ K+ YC+RT H LA+ +H Q G A +++ +G SR+NLC+N V+
Sbjct: 203 EHVTKIYYCSRT-HSQ---LAQF--VHEVQKSPYGDAVRLVNLG--SRQNLCINPEVVRL 254
Query: 125 ENRDSVDAAC---------RKRTASWVRALAAENPNIETCEF--FENYEKAASAAVLPPG 173
N ++ C +++ AS + + TC F FEN A VL
Sbjct: 255 GNVQMMNERCLEMQKNKHEKRQKASDSESKRSRGLAKATCVFSRFENL-MAMKDEVLVK- 312
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
V ++ L G++ CPY+ R + A VVV YQ LL ++ K+ +V+
Sbjct: 313 VRDVEQLIQHGRETHTCPYYSTRMSIPAAQVVVLPYQSLLHASTRKASGIKL-KDQIVII 371
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGAT--RNLSRINQEIERFKATDAGRLRAE 284
DEAHN+ ++ +S ++ + G R S+++Q ER+++ RL+A+
Sbjct: 372 DEAHNL----MDTIS-AIHSAEISGGQLCRAHSQLSQYCERYRS----RLKAK 415
Score = 85 (35.0 bits), Expect = 4.2e-43, Sum P(3) = 4.2e-43
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
FP+ YP Q S+M L ALD + + E PTGTGK+++L+
Sbjct: 10 FPFQP-YPIQESFMEALYTALDQRKVGIFESPTGTGKSLSLI 50
>POMBASE|SPAC3G6.11 [details] [associations]
symbol:chl1 "ATP-dependent DNA helicase Chl1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006342
"chromatin silencing" evidence=NAS] [GO:0007064 "mitotic sister
chromatid cohesion" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 PomBase:SPAC3G6.11 INTERPRO:IPR013020 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0006342 GO:GO:0007064
GO:GO:0045910 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 PIR:T38730 RefSeq:NP_594977.1
ProteinModelPortal:O14147 STRING:O14147 EnsemblFungi:SPAC3G6.11.1
GeneID:2543118 KEGG:spo:SPAC3G6.11 HOGENOM:HOG000241266 OMA:NLGRCVV
OrthoDB:EOG408RH6 NextBio:20804145 Uniprot:O14147
Length = 844
Score = 340 (124.7 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 80/287 (27%), Positives = 147/287 (51%)
Query: 430 DPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTR-- 487
+P L+ D S V+ + ++ +SV + GT+SPID + LL F SR S
Sbjct: 538 NPYLKYLLLDPSKHVEILTEQCRSVNLAGGTMSPIDDFITLL-FSDEQSRILPFSCDHIV 596
Query: 488 --DCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
+ I +++++G +P + D + ++ G+ +SI+PDG+V FF S++++
Sbjct: 597 PPENITTILVSQGPAGVPFEFTHKRKDDENLLKDLGRTFQNFISIIPDGVVVFFPSFAFL 656
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETTL-ALDNYRKACDCGRGAVFFSVARGKV 604
+ + W +GI + K +FIE++D + L ++Y+++ D G + FSV G++
Sbjct: 657 QQAVKVWEMNGITNRLNAKKPLFIESKDFGDNPLDTFEHYKQSVDAGLSGMLFSVIGGRL 716
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIK-------EGDFLTFDAL 657
+EGI+F GR V++ G+PF + A++ Y+ + + K +F +
Sbjct: 717 SEGINFSDKLGRAVMVVGMPFPNSQDVEWQAKVSYVEEKAKEKGINAKQASQEFYENTCM 776
Query: 658 RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDA 704
R Q +GR IR + DY +I D RY+R + KLP W+ ++ +
Sbjct: 777 RAVNQSIGRAIRHRDDYASIILLDSRYNRSSIQRKLPNWLSKNIHSS 823
Score = 171 (65.3 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 57/230 (24%), Positives = 110/230 (47%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
KP K+ + +RT ++++ + E+K L+N QT + I + L+SRKNLC+N+ V
Sbjct: 207 KPPIVQKIYFTSRTHSQLQQLVQEIKKLNN-QTF----STPIRVVSLASRKNLCINNEVR 261
Query: 123 AAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
+++ C + S A + P ++ ++ A A ++ +++L
Sbjct: 262 KLRPTSALNEKCIELQGS-----AHKCPFLQDNTQLWDFRDEALAEIMD-----IEELVE 311
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHN-IDN 241
G++ CPY+ R V A +V Y LL ++ + K+++ + DEAHN ID
Sbjct: 312 LGQRLKVCPYYGTREAVDSAQIVTLPYPLLLQESARNALNLTL-KDNICIIDEAHNLIDA 370
Query: 242 VC-IEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVE 290
+C + + S+S R+ + +++ Q RF+ G R +L++
Sbjct: 371 ICSMHSSSISFRQVCIAE-----TQLQQYFLRFEKRLNGNNRMHIKQLIK 415
Score = 59 (25.8 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
Y PYD Q +M L ++ + E PTGTGK+++L+
Sbjct: 17 YTPYDI----QLEFMRSLYSSISDGKIGIFESPTGTGKSLSLI 55
Score = 46 (21.3 bits), Expect = 1.3e-42, Sum P(4) = 1.3e-42
Identities = 20/77 (25%), Positives = 31/77 (40%)
Query: 321 GNIR-RAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERL 379
GN R + + V+ L + LET K V V S+ G DQ L E L
Sbjct: 404 GNNRMHIKQLIKVVYNLKSFFLNCLETNTNSK---VINVDSLLVSNGADQINLHHLSEYL 460
Query: 380 HSLMLTLEITDTDEFLH 396
+ L ++ +++H
Sbjct: 461 NVSKLARKVDGYTKYMH 477
Score = 41 (19.5 bits), Expect = 9.5e-10, Sum P(3) = 9.5e-10
Identities = 15/60 (25%), Positives = 26/60 (43%)
Query: 312 SDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRL-ETENVEKEGPVSFVASITAHAGIDQK 370
S +L + G + +F L R V + +++VE + VS+V GI+ K
Sbjct: 705 SGMLFSVIGGRLSEGINFSDKLGRAVMVVGMPFPNSQDVEWQAKVSYVEEKAKEKGINAK 764
>UNIPROTKB|E2RGR5 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030496 "midbody" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0000922 "spindle
pole" evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:AAEX03015316
Ensembl:ENSCAFT00000024894 Uniprot:E2RGR5
Length = 908
Score = 315 (115.9 bits), Expect = 3.2e-42, Sum P(3) = 3.2e-42
Identities = 82/265 (30%), Positives = 128/265 (48%)
Query: 452 QSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
++VVI GT+ P+ D +LL VV S + D I P+++ G +
Sbjct: 616 RAVVIAGGTMQPVSDFREQLLACAGVEAERVVEFSCGHVIPPDNILPLIICSGPSSQQLE 675
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ R P + G++L + ++VP G+VCFF SY Y ++ A W+ SG+L + K
Sbjct: 676 FTYQKRELPQMMDETGRILCNLCTVVPGGVVCFFPSYEYQRQVYAHWDKSGLLARLAVRK 735
Query: 566 LVFIETQDVVETTLALDNYRKACDC-GR------GAVFFSVARGKVAEGIDFDRHYGRLV 618
+F E + + L Y + C G+ GA+ SV GK++EGI+F GR V
Sbjct: 736 KIFQEPKRANQVEQVLMEYSRCIKCCGQAGGTVTGALLLSVVGGKMSEGINFSDDLGRCV 795
Query: 619 IMFGVPFQYTLSKILLARLEYLRDTF-----QIKEGDFLTFDALRQAA-QCVGRVIRSKA 672
+M G+P+ S L ++ YL T Q G L + +A Q +GR IR +
Sbjct: 796 VMVGMPYPNIKSPELQEKMAYLDQTLPRVPGQPPPGKALVENLCMKAVNQSIGRAIRHQK 855
Query: 673 DYGMMIFADKRYSRHDKRSKLPGWI 697
D+ ++ D+RY+R KLP WI
Sbjct: 856 DFASIVLLDQRYARPPILEKLPAWI 880
Score = 180 (68.4 bits), Expect = 3.2e-42, Sum P(3) = 3.2e-42
Identities = 69/225 (30%), Positives = 104/225 (46%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E+ K+ YC+RT H LA+ +H Q G +++++G SR+NLCVN V
Sbjct: 224 EHVTKIYYCSRT-HSQ---LAQF--VHEVQRSPFGKDTRLVSLG--SRQNLCVNEDVKTL 275
Query: 125 ENRDSVDAAC----RKRTASWVRALAAENPNIE------TCEFFENYEKAASAA--VLPP 172
+ ++ C R + S E P C F+ NYE+ VL
Sbjct: 276 GSVQLINDRCMEMQRSKHGSHKNRAEEEKPKRRRQEHQAACPFY-NYEQLQLLRDQVLV- 333
Query: 173 GVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
GV ++ L A GK+ CPY+ +R + A +VV YQ LL +Q + VVV
Sbjct: 334 GVKDIEQLVALGKEARACPYYGSRFAIPAAQLVVLPYQMLLHAATRQAAGIRLQGQ-VVV 392
Query: 233 FDEAHN-IDNVC-IEALSVSVRRQTLEGATRNLSRINQEIERFKA 275
DEAHN ID + I ++ VS Q + ++ L + + +R KA
Sbjct: 393 IDEAHNLIDTITGIHSVEVS-GSQLCQAHSQLLQYMERYGKRLKA 436
Score = 82 (33.9 bits), Expect = 3.2e-42, Sum P(3) = 3.2e-42
Identities = 22/74 (29%), Positives = 40/74 (54%)
Query: 4 KLEDV-TVYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL----LSLIT 57
K +++ ++FP+ Y Q +M EL R L+A + E PTGTGK++++ LS +
Sbjct: 4 KTQEIGDIHFPFPFTPYSIQKDFMAELYRVLEAGKIGIFESPTGTGKSLSVICGALSWLR 63
Query: 58 SYVLSKPENPVKLI 71
+ K + +L+
Sbjct: 64 DFEQKKHQEEARLL 77
>WB|WBGene00021759 [details] [associations]
symbol:Y50D7A.11 species:6239 "Caenorhabditis elegans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] InterPro:IPR006554
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
SMART:SM00488 GO:GO:0005524 GO:GO:0002009 GO:GO:0040010
GO:GO:0003677 GO:GO:0040035 EMBL:FO081772 GO:GO:0004003
eggNOG:COG1199 GeneTree:ENSGT00550000075092 RefSeq:NP_001022900.1
UniGene:Cel.9728 ProteinModelPortal:Q7YZG6 SMR:Q7YZG6 PaxDb:Q7YZG6
EnsemblMetazoa:Y50D7A.11 GeneID:3565352 KEGG:cel:CELE_Y50D7A.11
UCSC:Y50D7A.11 CTD:3565352 WormBase:Y50D7A.11 HOGENOM:HOG000203646
InParanoid:Q7YZG6 NextBio:956143 Uniprot:Q7YZG6
Length = 197
Score = 448 (162.8 bits), Expect = 8.6e-42, P = 8.6e-42
Identities = 88/184 (47%), Positives = 129/184 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + V FPYD +YPEQ YM E+K+ALDA+GH LLEMP+GTGKT++LLSL+ +Y+
Sbjct: 1 MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDARGHGLLEMPSGTGKTVSLLSLVLAYM 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLG-PAAKILAIGLSSRKNLCVNS 119
+S P+ KL+YC+RT+ E+EK + E+K+L++Y + G P AKI + +S+RKNLCVN
Sbjct: 61 ISYPDKLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKI-TVAMSARKNLCVNE 119
Query: 120 RVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQD 179
V A ++VD+AC+K TAS R AE+P +E C++FEN+E A + + GV+ L
Sbjct: 120 PVAALRFGNTVDSACQKLTASSARQKRAEDPTLEACDYFENFE--AKSVPMQNGVWNLVK 177
Query: 180 LRAF 183
+ F
Sbjct: 178 ICEF 181
>UNIPROTKB|B4JNS2 [details] [associations]
symbol:GH24089 "Regulator of telomere elongation helicase 1
homolog" species:7222 "Drosophila grimshawi" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 EMBL:CH916371 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 KO:K11136 OMA:PFPPLKD
OrthoDB:EOG4S4MX7 RefSeq:XP_001992658.1 EnsemblMetazoa:FBtr0159503
GeneID:6565576 KEGG:dgr:Dgri_GH24089 FlyBase:FBgn0131545
InParanoid:B4JNS2 Uniprot:B4JNS2
Length = 986
Score = 336 (123.3 bits), Expect = 5.9e-41, Sum P(2) = 5.9e-41
Identities = 81/280 (28%), Positives = 145/280 (51%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFH-PVVSRSFKMSLTRDC 489
++ C + ++ + + +SV++TSGTL+P L P + PV + +
Sbjct: 454 IINFWCFNPGFGMEQLLNTHVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVNEA 511
Query: 490 -ICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 512 QVYVKIIGTGPDREQLISNYKNRDNPKYISSLGQTILNVSRIVPDGLLVFFPSYPMLNQC 571
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GA F +V RGKV+EG+
Sbjct: 572 VDAWQASGLWADISSRKPIFLEPRGKDQFTSTMEEFYQAIRDSKGACFMAVCRGKVSEGL 631
Query: 609 DFDRHYGRLVIMFGVPFQYTLS-KILLARLEYLRDTFQIKEGDFLT------FDALRQAA 661
DF GR VI+ G+PF K++L R YL +T + +E L+ +A R
Sbjct: 632 DFADRNGRAVIITGLPFPPLKDPKVILKR-RYL-ETNRTRENQLLSGNEWYNLEATRAVN 689
Query: 662 QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHL 701
Q +GRVIR + DYG ++ D R+ + +L WI +HL
Sbjct: 690 QAIGRVIRHRNDYGAILLCDARFQDASQVQQLSKWIRNHL 729
Score = 184 (69.8 bits), Expect = 5.9e-41, Sum P(2) = 5.9e-41
Identities = 79/335 (23%), Positives = 142/335 (42%)
Query: 44 TGTGKTIALLSLITSYVLSKPEN--PVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPA 101
TG A + + V+ K N K+IY +RT ++ + + ELK +T +
Sbjct: 83 TGAAGAGAAMGSEIAAVIGKSNNWGVPKVIYASRTHSQLTQAMRELK-----RTAY---- 133
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
A + A+ L SR LC++ V+ + + C+ + V A ++C F
Sbjct: 134 ANMRAVVLGSRDQLCIHPDVMREQGNSNKVNMCKLK----VHA--------KSCTFQLRV 181
Query: 162 E-KAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
E K P + ++DL G++ CPYF ++ +V A++ Y YLLDPK
Sbjct: 182 ESKKDHPDFRGPSIMDIEDLVKVGQRLKMCPYFASKELVNSADITFMPYNYLLDPKARKA 241
Query: 221 ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI------NQEIERFK 274
E+ ++V+ DE HNI+ +C E+ SV +R + A +++ I + + +
Sbjct: 242 NKIELSN-AIVILDEGHNIEKICEESASVQIRSSDVAIAIEDVTHIMKIFTSSSDSQDTA 300
Query: 275 ATDAGR-LRAEYNRLVEGLALRGNLPIADAWLSNPA----LPSDILKEAV-PGNIRRAE- 327
D + + L++ + L I + N A P+ + E + N
Sbjct: 301 GPDEPKDFTIDDLTLLKEMLLELEKAIDGVIVDNKADGATYPASYMYELLGKANFTHGNC 360
Query: 328 -HFLHVLRRLVQYLRGRLETENVEKEGPVSFVASI 361
+ +L +LVQYL + + K G +A +
Sbjct: 361 ATIVALLDKLVQYLMVASQHSMLRKGGSFMVLADL 395
Score = 89 (36.4 bits), Expect = 5.4e-31, Sum P(2) = 5.4e-31
Identities = 40/140 (28%), Positives = 66/140 (47%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENP 67
+ V+FP++ Y Q +YM ++ L + +LE PTGTGKT++LL ++ ++ ++
Sbjct: 9 IPVHFPFEP-YDVQRAYMEKVIICLRDGTNGVLESPTGTGKTLSLLCSTLGWIRTR-QSE 66
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIG------LSSRKNLCVNSRV 121
V+L M+K L H+ QT+ G A A+G + N V +
Sbjct: 67 VQL--------NMQK------LQHDQQTQLTGAAGAGAAMGSEIAAVIGKSNNWGVPKVI 112
Query: 122 LAAENRDSVDAACR--KRTA 139
A+ + A R KRTA
Sbjct: 113 YASRTHSQLTQAMRELKRTA 132
>UNIPROTKB|A8MPP1 [details] [associations]
symbol:DDX11L8 "Putative ATP-dependent RNA helicase
DDX11-like protein 8" species:9606 "Homo sapiens" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0003723 GO:GO:0004003 eggNOG:COG1199
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 EMBL:AC009533
IPI:IPI00872853 ProteinModelPortal:A8MPP1 SMR:A8MPP1 STRING:A8MPP1
PhosphoSite:A8MPP1 PaxDb:A8MPP1 PRIDE:A8MPP1 GeneCards:GC12M000095
HGNC:HGNC:37101 neXtProt:NX_A8MPP1 HOVERGEN:HBG058884
InParanoid:A8MPP1 OrthoDB:EOG4B5P4M Genevestigator:A8MPP1
Uniprot:A8MPP1
Length = 907
Score = 315 (115.9 bits), Expect = 9.1e-41, Sum P(3) = 9.1e-41
Identities = 86/265 (32%), Positives = 129/265 (48%)
Query: 452 QSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
++VVI GT+ P+ D +LL VV S + D I P+V+ G P+
Sbjct: 616 RAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNI-PLVICSGISNQPLE 674
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
F R P + G++L + +V G+VCFF SY Y+ ++ A W G+L + K
Sbjct: 675 FTFQKRDLPQMMDEVGRILCNLCGVVSGGVVCFFSSYEYLRQVHAHWEKGGLLGRLAARK 734
Query: 566 LVFIETQD---VVETTLALDNYRKACDCGRG----AVFFSVARGKVAEGIDFDRHYGRLV 618
+F E + V + LA +AC RG A+ SV GK++EGI+F + GR V
Sbjct: 735 KIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTEALLLSVVGGKMSEGINFSDNLGRCV 794
Query: 619 IMFGVPFQYTLSKILLARLEYLRDTF-----QIKEGDFLTFDALRQAA-QCVGRVIRSKA 672
+M G+PF S L ++ YL T Q G L + +A Q +GR IR +
Sbjct: 795 VMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQK 854
Query: 673 DYGMMIFADKRYSRHDKRSKLPGWI 697
D+ ++ D+RY+R +KLP WI
Sbjct: 855 DFASIVLLDQRYARPPVLAKLPAWI 879
Score = 159 (61.0 bits), Expect = 9.1e-41, Sum P(3) = 9.1e-41
Identities = 62/245 (25%), Positives = 108/245 (44%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E+ K+ +C+RT H LA+ +H + G +++++G SR+NLCVN V +
Sbjct: 226 EHITKIYHCSRT-HSQ---LAQF--VHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVRSL 277
Query: 125 ENRDSVDAAC---------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVY 175
+ ++ C +K+ A + C F+ + + V
Sbjct: 278 GSVQLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVK 337
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
++ L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DE
Sbjct: 338 DMEQLLALGKEARACPYYRSRLAIPAAKLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDE 396
Query: 236 AHNIDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA- 293
AHN+ + SV V Q + ++ L + + +R KA + L+ L + +A
Sbjct: 397 AHNLIDTITGMHSVEVSGSQLCQAHSQLLQYMERYGKRLKAKNLMYLKQILYLLEKFVAV 456
Query: 294 LRGNL 298
L GN+
Sbjct: 457 LGGNI 461
Score = 89 (36.4 bits), Expect = 9.1e-41, Sum P(3) = 9.1e-41
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 10 VYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL----LSLITSYVLSKP 64
++FP+ Y Q +M EL R L+A + E PTGTGK+++L LS + + K
Sbjct: 11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKKR 70
Query: 65 ENPVKLIYC-TRTVHEMEK 82
E +L+ T +H+ EK
Sbjct: 71 EEEARLLETGTGPLHD-EK 88
Score = 52 (23.4 bits), Expect = 1.7e-12, Sum P(3) = 1.7e-12
Identities = 44/198 (22%), Positives = 78/198 (39%)
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLE----TENVEKEGP-VSFVASITAHAGIDQ----KTL 372
N+ + L++L + V L G ++ T+++ + G + + + ID K
Sbjct: 439 NLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGTELKTINDFLFQSQIDNINLFKVQ 498
Query: 373 RFCYERLHSLML---TLEITDTDEFLHIQTICDFAT-LVGTYTRGFSIIIEPFDERMPHI 428
R+C + + S L T + F L R + P DE +
Sbjct: 499 RYCEKSMISRKLFGFTERYGAVFSSREQPKLAGFQQFLQSLQPRTTEALAAPADESQASV 558
Query: 429 PDPVLQLSCHDASLAVKPVFDRFQSVVIT-SGTLSPIDLYPRLLNFHPVVSRSFKMSLTR 487
P P L + LA ++ V+++ G+LS L LLN P V + + +
Sbjct: 559 PQPASPLMHIEGFLAALTTANQDGRVILSRQGSLSESTLKFLLLN--PAVHFA---QVVK 613
Query: 488 DCICPMVLTRGSDQLPVS 505
+C +V+ G+ Q PVS
Sbjct: 614 ECRA-VVIAGGTMQ-PVS 629
>UNIPROTKB|D6RA96 [details] [associations]
symbol:RTEL1-TNFRSF6B "Protein RTEL1-TNFRSF6B" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 EMBL:AL121845 EMBL:AL353715
HOGENOM:HOG000007558 ProteinModelPortal:D6RA96 SMR:D6RA96
Ensembl:ENST00000492259 HGNC:HGNC:44095 ArrayExpress:D6RA96
Bgee:D6RA96 Uniprot:D6RA96
Length = 785
Score = 257 (95.5 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 73/247 (29%), Positives = 124/247 (50%)
Query: 452 QSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
+S+++TSGTL+P+ + + PV + + + + I V+ RG D +S+ FD
Sbjct: 501 RSLILTSGTLAPVSSFALEMQIPFPVCLENPHI-IDKHQIWVGVVPRGPDGAQLSSAFDR 559
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE 570
R + GK L + +VP G++ FF SY M++ + W + +++ K +F+E
Sbjct: 560 RFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVE 619
Query: 571 TQDVVETTLALDNY--RKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT 628
+ + + Y R A GA F +V RGK +EG+DF GR VI+ G+P+
Sbjct: 620 PRSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPR 679
Query: 629 LSKILLARLEYLRDTFQIKEG---DFLTFDA-LRQAA-----QCVGRVIRSKADYGMMIF 679
+ ++ ++++L D + + G FL+ RQ A Q +GRVIR + DYG +
Sbjct: 680 MDPRVVLKMQFL-DEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFL 738
Query: 680 ADKRYSR 686
D R R
Sbjct: 739 CDHRCQR 745
Score = 210 (79.0 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 81/299 (27%), Positives = 136/299 (45%)
Query: 82 KTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASW 141
+T ++L + N + R+ K+ +G SR+ LC++ V E+ CRK+ AS
Sbjct: 114 RTHSQLTQVIN-ELRNTSYRPKVCVLG--SREQLCIHPEVKKQESNHLQIHLCRKKVAS- 169
Query: 142 VRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
+C F+ N E+ + L + ++DL G + CPY+L+R++ Q
Sbjct: 170 -----------RSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQQ 218
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
A+++ Y YLLD K + ++ K +VV+FDEAHN++ +C E+ S + L
Sbjct: 219 ADIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASG-- 275
Query: 262 NLSRINQEIE-RFKATDAGRLRAEYNRLVEGLALRGNLPIAD-AWLSNPALPSDILKEAV 319
L I+Q +E + KA G E++ L N+ + D A L + P +L A
Sbjct: 276 -LDVIDQVLEEQTKAAQQGEPHPEFSADSPSPGL--NMELEDIAKLKSKCCPPRLL--AA 330
Query: 320 PGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEG-------PVSFVASITAHAGIDQKT 371
+ A ++ R V LR + VE G P S++ + A A I +T
Sbjct: 331 GWGLLLARRWVTPPRPTVILLRLEGAIDAVELPGDDSGVTKPGSYIFELFAEAQITFQT 389
Score = 97 (39.2 bits), Expect = 1.1e-40, Sum P(3) = 1.1e-40
Identities = 23/49 (46%), Positives = 29/49 (59%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
L VTV FP+ Y Q YM ++ L K + +LE PTGTGKT+ LL
Sbjct: 6 LNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLL 53
Score = 71 (30.1 bits), Expect = 2.8e-26, Sum P(3) = 2.8e-26
Identities = 23/72 (31%), Positives = 37/72 (51%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + EL+ N R P K+ +G SR+ LC++ V E+
Sbjct: 108 KIIYASRTHSQLTQVINELR---NTSYR---P--KVCVLG--SREQLCIHPEVKKQESNH 157
Query: 129 SVDAACRKRTAS 140
CRK+ AS
Sbjct: 158 LQIHLCRKKVAS 169
>CGD|CAL0004313 [details] [associations]
symbol:orf19.2000 species:5476 "Candida albicans" [GO:0003678
"DNA helicase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0007535
"donor selection" evidence=IEA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0007064 "mitotic sister chromatid
cohesion" evidence=IEA] InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0007049
GO:GO:0004003 EMBL:AACQ01000031 EMBL:AACQ01000030
RefSeq:XP_719450.1 RefSeq:XP_719578.1 ProteinModelPortal:Q5AD67
STRING:Q5AD67 GeneID:3638692 GeneID:3638794 KEGG:cal:CaO19.2000
KEGG:cal:CaO19.9551 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 Uniprot:Q5AD67
Length = 842
Score = 299 (110.3 bits), Expect = 2.8e-40, Sum P(3) = 2.8e-40
Identities = 88/308 (28%), Positives = 148/308 (48%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRG 498
D S K + D+ + V++ GT+ P+ Y L P V + K++ C V+ +
Sbjct: 539 DPSAVFKEIVDQAKCVLLCGGTMEPMSDYMDYL--FPSVPTN-KINTFA---CGHVIPKE 592
Query: 499 SDQL-PVS----TKFDM----RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEII 549
+ Q+ P+S T F+ R+D G+ L+E+ VP G+V FF SY Y+D+++
Sbjct: 593 NLQVFPISQWNDTNFEFSYQKRNDSKQLMALGEFLIEITKRVPYGVVIFFPSYKYLDQVL 652
Query: 550 ATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGR-GAVFFSVARGKVAEGI 608
W D+ IL I K +F E +D L+ Y R GA+ FSV GK++EGI
Sbjct: 653 QFWRDTKILTSIESEKTIFREPKDPSNVEKVLNEYGYLIQTERKGAILFSVVGGKMSEGI 712
Query: 609 DFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDA------------ 656
+F R VIM G+P+ S ++ + +Y+ +T ++ G T DA
Sbjct: 713 NFSDDLARAVIMVGLPYPNAYSGEMVTKRKYI-ETSELSNGGTTT-DAKEKSRNYYENLC 770
Query: 657 LRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHI 716
+R Q +GR IR DY ++ D+R+S ++KL W+ + N + + +++I
Sbjct: 771 MRAVNQSIGRSIRHINDYSIIYLVDRRFSTPRIQNKLSQWVKERISITTTNNNNNNSIYI 830
Query: 717 AREVGNFY 724
+F+
Sbjct: 831 MESTTDFF 838
Score = 205 (77.2 bits), Expect = 2.8e-40, Sum P(3) = 2.8e-40
Identities = 68/301 (22%), Positives = 137/301 (45%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E P+K+ + +RT ++ + ++L+L N+Q + I L SRK LC+N +V +
Sbjct: 198 ECPIKIFFSSRTHSQLNQFSSQLRLT-NFQASFEDLEERTKYIPLGSRKQLCINEKVRSK 256
Query: 125 ENRDSVDAACR--KRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRA 182
N SV+ AC +R + + L + F + A + ++DL
Sbjct: 257 GNDQSVNDACLDLQRETNGCQYLPKNYMMSSVTKEFADLSLAK--------IRDIEDLNE 308
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
G + CPY+ R ++ ++ YQ + I++ ++ K+S+++ DEAHNI +V
Sbjct: 309 LGIELNICPYYSVRKGIEMTEIISLPYQMIFQDTTRKILNLDI-KDSIIIIDEAHNIIDV 367
Query: 243 CIEALSVSVRRQTLEGATRNLS-RINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIA 301
S+ + L ++L +N+ ++R + + L + ++ + L N
Sbjct: 368 ITSMYSIKITSDQLNKVIKSLKIYLNKFLKRLNSGNRINLM-KLIKICQILLKFLNTNSE 426
Query: 302 DAWLSNPALPSDILKEAVPG--NIRRAEHFL---HVLRRLVQYL-RGRLETENVEKEGPV 355
+ DI K++ NI + + FL + ++ Y+ + +ET+N EK+G +
Sbjct: 427 KVKSGDEVQIQDIFKDSTGDLVNIHKLDQFLTKSKIAYKIESYIEKTEMETDNGEKKGRI 486
Query: 356 S 356
+
Sbjct: 487 T 487
Score = 54 (24.1 bits), Expect = 2.8e-40, Sum P(3) = 2.8e-40
Identities = 9/15 (60%), Positives = 13/15 (86%)
Query: 39 LLEMPTGTGKTIALL 53
L E PTGTGKT++++
Sbjct: 39 LFESPTGTGKTLSII 53
>UNIPROTKB|Q92771 [details] [associations]
symbol:DDX12P "Putative ATP-dependent RNA helicase DDX12"
species:9606 "Homo sapiens" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0007049
GO:GO:0004003 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 HOVERGEN:HBG058884 EMBL:AC092821 EMBL:AC141557
EMBL:U33834 IPI:IPI00023299 UniGene:Hs.447869 UniGene:Hs.504688
ProteinModelPortal:Q92771 SMR:Q92771 STRING:Q92771
PhosphoSite:Q92771 DMDM:182705254 PRIDE:Q92771
GeneCards:GC12M009720 HGNC:HGNC:2737 MIM:601151 neXtProt:NX_Q92771
InParanoid:Q92771 ArrayExpress:Q92771 CleanEx:HS_DDX12
Genevestigator:Q92771 Uniprot:Q92771
Length = 950
Score = 320 (117.7 bits), Expect = 7.2e-40, Sum P(3) = 7.2e-40
Identities = 84/265 (31%), Positives = 128/265 (48%)
Query: 452 QSVVITSGTLSPIDLYPRLL------NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
++VVI GT+ P+ + + L VV S + D I P+V+ G P+
Sbjct: 633 RAVVIAGGTMQPVSNFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGVSNQPLE 692
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
F R P + G++L + +V G+VCFF SY Y+ ++ A W G+L + K
Sbjct: 693 FTFQKRDLPQMMDEVGRILCNLCGVVSGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARK 752
Query: 566 LVFIETQD---VVETTLALDNYRKACDCGRG----AVFFSVARGKVAEGIDFDRHYGRLV 618
+F E + V + LA +AC RG A+ SV GK++EGI+F + GR V
Sbjct: 753 KIFQEPKSAHQVEQVLLAYSRCLQACGQERGPVTGALLLSVVGGKMSEGINFSDNLGRCV 812
Query: 619 IMFGVPFQYTLSKILLARLEYLRDTF-----QIKEGDFLTFDALRQAA-QCVGRVIRSKA 672
+M G+PF S L ++ YL T Q G L + +A Q +GR IR +
Sbjct: 813 VMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAHPGKALVENLCMKAVNQSIGRAIRHQK 872
Query: 673 DYGMMIFADKRYSRHDKRSKLPGWI 697
D+ ++ D+RY+R +KLP WI
Sbjct: 873 DFASIVLLDQRYARPPVLAKLPAWI 897
Score = 159 (61.0 bits), Expect = 7.2e-40, Sum P(3) = 7.2e-40
Identities = 62/245 (25%), Positives = 108/245 (44%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E+ K+ +C+RT H LA+ +H + G +++++G SR+NLCVN V +
Sbjct: 243 EHITKIYHCSRT-HSQ---LAQF--VHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVRSL 294
Query: 125 ENRDSVDAAC---------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVY 175
+ ++ C +K+ A + C F+ + + V
Sbjct: 295 GSVQLINNRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVK 354
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
++ L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DE
Sbjct: 355 DMEQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDE 413
Query: 236 AHNIDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA- 293
AHN+ + SV V Q + ++ L + + +R KA + L+ L + +A
Sbjct: 414 AHNLIDTTTSMHSVEVSGSQLCQAHSQLLQYMERYGKRLKAKNLMYLKQILYLLEKFVAV 473
Query: 294 LRGNL 298
L GN+
Sbjct: 474 LGGNI 478
Score = 76 (31.8 bits), Expect = 7.2e-40, Sum P(3) = 7.2e-40
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 17 IYP-EQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL----LSLITSYVLSKPENPVKLI 71
I P ++ +M EL R L+A + E PTGTGK+++L LS + + K E +L+
Sbjct: 37 ILPAKKEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKKREEEARLL 96
Query: 72 YC-TRTVHEMEK 82
T +H+ EK
Sbjct: 97 ETGTGPLHD-EK 107
Score = 52 (23.4 bits), Expect = 4.3e-11, Sum P(3) = 4.3e-11
Identities = 44/198 (22%), Positives = 78/198 (39%)
Query: 322 NIRRAEHFLHVLRRLVQYLRGRLE----TENVEKEG-PVSFVASITAHAGIDQ----KTL 372
N+ + L++L + V L G ++ T+++ + G + + + ID K
Sbjct: 456 NLMYLKQILYLLEKFVAVLGGNIKQNPNTQSLSQTGMELKTINDFLFQSQIDNINLFKVQ 515
Query: 373 RFCYERLHSLML---TLEITDTDEFLHIQTICDFAT-LVGTYTRGFSIIIEPFDERMPHI 428
R+C + + S L T + F L R + P DE +
Sbjct: 516 RYCEKSMISRKLFGFTERYGAVFSSREQPKLAGFQQFLQSLQPRTTEALAAPADESQASV 575
Query: 429 PDPVLQLSCHDASLAVKPVFDRFQSVVIT-SGTLSPIDLYPRLLNFHPVVSRSFKMSLTR 487
P P L + LA ++ V+++ G+LS L LLN P V + + +
Sbjct: 576 PQPASPLMHIEGFLAALTTANQDGRVILSRQGSLSQSTLKFLLLN--PAVHFA---QVVK 630
Query: 488 DCICPMVLTRGSDQLPVS 505
+C +V+ G+ Q PVS
Sbjct: 631 ECRA-VVIAGGTMQ-PVS 646
>WB|WBGene00009124 [details] [associations]
symbol:rtel-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0051539 GO:GO:0004003 GO:GO:0010569
eggNOG:COG1199 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
EMBL:Z79754 KO:K11136 OMA:PFPPLKD HOGENOM:HOG000154218 EMBL:Z83224
PIR:T21356 RefSeq:NP_492769.1 ProteinModelPortal:Q93575 SMR:Q93575
IntAct:Q93575 MINT:MINT-227415 STRING:Q93575 PaxDb:Q93575
EnsemblMetazoa:F25H2.13.1 EnsemblMetazoa:F25H2.13.2 GeneID:172946
KEGG:cel:CELE_F25H2.13 UCSC:F25H2.13 CTD:172946 WormBase:F25H2.13
InParanoid:Q93575 NextBio:877635 Uniprot:Q93575
Length = 994
Score = 292 (107.8 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 85/280 (30%), Positives = 138/280 (49%)
Query: 437 CHDASLAVKPVFDR-FQSVVITSGTLSPIDL--YPRLLNFHPVVSRSFKMSLTRDCICPM 493
C AS++++ + R ++V++ SGTLSPI Y LNF ++ +L + +
Sbjct: 469 CFQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGAILENEH--ALKQVPVLTS 526
Query: 494 VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW- 552
++TRG + ++ F R + + L+ ++ ++P GI+ FF SYS MDE++ATW
Sbjct: 527 IVTRGK-RGGLAGSFQNRKNLDYVTGVAEALLRVMEVIPQGILIFFSSYSQMDELVATWK 585
Query: 553 ------NDSGILKEIMQH-KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVA 605
N + E M+ K V +E + E Y + GA +V RGKV+
Sbjct: 586 TTKWSSNSNESFWEKMEKTKRVVVEPRAKEELAAIRLRYTQGVSEQHGAALLAVCRGKVS 645
Query: 606 EGIDFDRHYGRLVIMFGVPF------QYTLSKILLARLEYLRDTFQIKEG--DFLTFDAL 657
EGIDF R VI+ G+P+ + L K+ L L +DT ++ D+ +A
Sbjct: 646 EGIDFCDAESRAVIIIGIPYPPIHDERVVLKKMYLDDLMGRKDTKSERQSSQDWYQMEAF 705
Query: 658 RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWI 697
R Q +GRV+R K D+G ++ D RY+ K P W+
Sbjct: 706 RAVNQAIGRVLRHKDDFGTVVLMDTRYASA-KPEMFPKWL 744
Score = 217 (81.4 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 68/274 (24%), Positives = 127/274 (46%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPEN- 66
++V FP++ Y Q +M + LD K LE PTGTGKT++LL ++V + E
Sbjct: 17 LSVKFPFEP-YECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWVQRQKETK 75
Query: 67 PVKLI-YCTRTVHEMEKTLAELKLLHN----YQTRHLGPAAKILAIGLSSRKNLCVNSRV 121
P+ + T EKT +LK + Y +R +++ L+ + V + +
Sbjct: 76 PLDFATWQTSGAGGAEKTDEKLKSAYVPTIFYASRTHSQLEQVVH-ELNRTEYKWVKTTI 134
Query: 122 LAAENRDSVDAACRK-----RTASWVRALAAENPNIETCEFFENYEKAASAAV---LPPG 173
L + ++ +K R A R L ++ C ++ ++ + + L G
Sbjct: 135 LGSREHFCINQKVKKIKESNRQAHVCRGLVSKR----ACHYYNKFDACTTDKMTEFLDKG 190
Query: 174 -VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
++D G Q CPYF++R + A +++ Y Y++DPK+ ++ K S+V+
Sbjct: 191 EAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPYNYIIDPKMRRRYKLDL-KNSIVI 249
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
FDEAHN++++C S + ++ L ++
Sbjct: 250 FDEAHNLESICESNASAELTSTSIALCIEELKKV 283
Score = 42 (19.8 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 35/173 (20%), Positives = 68/173 (39%)
Query: 191 PYFLARHMVQFAN-VVVYSYQYLLDPKVAGIISKEMQKESVVV-FDEAHNIDNVCIEALS 248
P R+ + N +V++ + L+ S E+ S+ + +E + + ++
Sbjct: 233 PKMRRRYKLDLKNSIVIFDEAHNLESICESNASAELTSTSIALCIEELKKVLALLVDEEE 292
Query: 249 VSVRRQTLE-GA--TRNLSRINQEIERFKATDAGRLRAEYNRLVEGL-ALRGNLPIADAW 304
+ E GA + + + IE + D + + L E + L G+ +
Sbjct: 293 TARSEADAETGAFGSAKIDLTKKLIENLRTEDLMTVLEKIFSLEEEMDKLFGSSQLKSVP 352
Query: 305 -LSNPALPSDILKE--AVPG-NIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
LS A +IL E A G + E + VLR + YL + E + ++G
Sbjct: 353 PLSGKASDGEILLETLAKAGFDANSVERLVDVLRDAISYLLSKNEEVALTEKG 405
>UNIPROTKB|Q93575 [details] [associations]
symbol:rtel-1 "Regulator of telomere elongation helicase 1
homolog" species:6239 "Caenorhabditis elegans" [GO:0005634
"nucleus" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=IGI] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 EMBL:Z79754
KO:K11136 OMA:PFPPLKD HOGENOM:HOG000154218 EMBL:Z83224 PIR:T21356
RefSeq:NP_492769.1 ProteinModelPortal:Q93575 SMR:Q93575
IntAct:Q93575 MINT:MINT-227415 STRING:Q93575 PaxDb:Q93575
EnsemblMetazoa:F25H2.13.1 EnsemblMetazoa:F25H2.13.2 GeneID:172946
KEGG:cel:CELE_F25H2.13 UCSC:F25H2.13 CTD:172946 WormBase:F25H2.13
InParanoid:Q93575 NextBio:877635 Uniprot:Q93575
Length = 994
Score = 292 (107.8 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 85/280 (30%), Positives = 138/280 (49%)
Query: 437 CHDASLAVKPVFDR-FQSVVITSGTLSPIDL--YPRLLNFHPVVSRSFKMSLTRDCICPM 493
C AS++++ + R ++V++ SGTLSPI Y LNF ++ +L + +
Sbjct: 469 CFQASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGAILENEH--ALKQVPVLTS 526
Query: 494 VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW- 552
++TRG + ++ F R + + L+ ++ ++P GI+ FF SYS MDE++ATW
Sbjct: 527 IVTRGK-RGGLAGSFQNRKNLDYVTGVAEALLRVMEVIPQGILIFFSSYSQMDELVATWK 585
Query: 553 ------NDSGILKEIMQH-KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVA 605
N + E M+ K V +E + E Y + GA +V RGKV+
Sbjct: 586 TTKWSSNSNESFWEKMEKTKRVVVEPRAKEELAAIRLRYTQGVSEQHGAALLAVCRGKVS 645
Query: 606 EGIDFDRHYGRLVIMFGVPF------QYTLSKILLARLEYLRDTFQIKEG--DFLTFDAL 657
EGIDF R VI+ G+P+ + L K+ L L +DT ++ D+ +A
Sbjct: 646 EGIDFCDAESRAVIIIGIPYPPIHDERVVLKKMYLDDLMGRKDTKSERQSSQDWYQMEAF 705
Query: 658 RQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWI 697
R Q +GRV+R K D+G ++ D RY+ K P W+
Sbjct: 706 RAVNQAIGRVLRHKDDFGTVVLMDTRYASA-KPEMFPKWL 744
Score = 217 (81.4 bits), Expect = 1.6e-39, Sum P(2) = 1.6e-39
Identities = 68/274 (24%), Positives = 127/274 (46%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPEN- 66
++V FP++ Y Q +M + LD K LE PTGTGKT++LL ++V + E
Sbjct: 17 LSVKFPFEP-YECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWVQRQKETK 75
Query: 67 PVKLI-YCTRTVHEMEKTLAELKLLHN----YQTRHLGPAAKILAIGLSSRKNLCVNSRV 121
P+ + T EKT +LK + Y +R +++ L+ + V + +
Sbjct: 76 PLDFATWQTSGAGGAEKTDEKLKSAYVPTIFYASRTHSQLEQVVH-ELNRTEYKWVKTTI 134
Query: 122 LAAENRDSVDAACRK-----RTASWVRALAAENPNIETCEFFENYEKAASAAV---LPPG 173
L + ++ +K R A R L ++ C ++ ++ + + L G
Sbjct: 135 LGSREHFCINQKVKKIKESNRQAHVCRGLVSKR----ACHYYNKFDACTTDKMTEFLDKG 190
Query: 174 -VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVV 232
++D G Q CPYF++R + A +++ Y Y++DPK+ ++ K S+V+
Sbjct: 191 EAMDIEDFVKLGTQNSLCPYFMSRQRSETAELILLPYNYIIDPKMRRRYKLDL-KNSIVI 249
Query: 233 FDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
FDEAHN++++C S + ++ L ++
Sbjct: 250 FDEAHNLESICESNASAELTSTSIALCIEELKKV 283
Score = 42 (19.8 bits), Expect = 3.3e-21, Sum P(2) = 3.3e-21
Identities = 35/173 (20%), Positives = 68/173 (39%)
Query: 191 PYFLARHMVQFAN-VVVYSYQYLLDPKVAGIISKEMQKESVVV-FDEAHNIDNVCIEALS 248
P R+ + N +V++ + L+ S E+ S+ + +E + + ++
Sbjct: 233 PKMRRRYKLDLKNSIVIFDEAHNLESICESNASAELTSTSIALCIEELKKVLALLVDEEE 292
Query: 249 VSVRRQTLE-GA--TRNLSRINQEIERFKATDAGRLRAEYNRLVEGL-ALRGNLPIADAW 304
+ E GA + + + IE + D + + L E + L G+ +
Sbjct: 293 TARSEADAETGAFGSAKIDLTKKLIENLRTEDLMTVLEKIFSLEEEMDKLFGSSQLKSVP 352
Query: 305 -LSNPALPSDILKE--AVPG-NIRRAEHFLHVLRRLVQYLRGRLETENVEKEG 353
LS A +IL E A G + E + VLR + YL + E + ++G
Sbjct: 353 PLSGKASDGEILLETLAKAGFDANSVERLVDVLRDAISYLLSKNEEVALTEKG 405
>TAIR|locus:2017894 [details] [associations]
symbol:AT1G79890 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006310 "DNA
recombination" evidence=RCA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0010332 "response to gamma
radiation" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0033044 "regulation of chromosome
organization" evidence=RCA] [GO:0042138 "meiotic DNA double-strand
break formation" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] InterPro:IPR002464
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 EMBL:AC011717
UniGene:At.18069 eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 HOGENOM:HOG000241266 OMA:NLGRCVV IPI:IPI00530666
PIR:A96830 RefSeq:NP_178107.1 UniGene:At.66890
ProteinModelPortal:Q9CA92 SMR:Q9CA92 STRING:Q9CA92 PaxDb:Q9CA92
PRIDE:Q9CA92 EnsemblPlants:AT1G79890.1 GeneID:844328
KEGG:ath:AT1G79890 TAIR:At1g79890 InParanoid:Q9CA92
PhylomeDB:Q9CA92 ProtClustDB:CLSN2681868 Genevestigator:Q9CA92
Uniprot:Q9CA92
Length = 882
Score = 272 (100.8 bits), Expect = 3.2e-39, Sum P(4) = 3.2e-39
Identities = 68/217 (31%), Positives = 113/217 (52%)
Query: 447 VFDRFQSVVITSGTLSPID-LYPRLLNFHPVVS-RSFKMS--LTRDCICPMVLTRGSDQL 502
V D +V++ GTL PI+ RL + P + F S + + I P+ ++ G
Sbjct: 553 VVDEAHAVILAGGTLQPIEETRERLFPWLPSNQLQFFSCSHIVPPESIMPIAVSHGPSGQ 612
Query: 503 PVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562
RS G+ + G L+ +V++VP+GI+ FF S+ Y ++ W++SGIL+ I+
Sbjct: 613 SFDFSHSSRSSIGMIQELGLLMSNLVAVVPEGIIVFFSSFEYETQVHTAWSNSGILRRIV 672
Query: 563 QHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
+ K VF E + E L +Y++A + RGA+ +V GKV+EGI+F R V+M G
Sbjct: 673 KKKRVFREPRKNTEVEAVLRDYKEAIESERGAIMLAVVGGKVSEGINFSDSMCRCVVMVG 732
Query: 623 VPFQYTLSKILLARLEYLR---DTFQIKEGDFLTFDA 656
+P+ LL R++++ D+ IK L D+
Sbjct: 733 LPYPSPSDIELLERIKHIEGRADSDSIKPSVTLVDDS 769
Score = 163 (62.4 bits), Expect = 3.2e-39, Sum P(4) = 3.2e-39
Identities = 54/202 (26%), Positives = 91/202 (45%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ +C+RT ++ + + EL+ +T A K+ + L SRKNLC+N VL N
Sbjct: 184 KVFFCSRTHSQLSQFVKELR-----KTVF---AKKLKVVCLGSRKNLCINEDVLKLGNVT 235
Query: 129 SVDAAC---RKRTASWV---RALAAENPNIET-----CEFFENY--EKAASAAVLPPGVY 175
++ C +K+ S V + L A + T C + ++ A
Sbjct: 236 RINERCLDLQKKKISQVSKKKNLGANVRIVRTKASCRCPMLRKHKLQREFKAESFQQEAM 295
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
++DL G++ CPY+ +R M A++V+ YQ LL + + K SVV+ DE
Sbjct: 296 DIEDLVQLGREMRTCPYYGSRRMAPAADLVILPYQSLLSKSSRESLGLSL-KNSVVIIDE 354
Query: 236 AHNIDNVCIEALSVSVRRQTLE 257
AHN+ + + + LE
Sbjct: 355 AHNLADTLLSMHDAKLTVSQLE 376
Score = 84 (34.6 bits), Expect = 3.2e-39, Sum P(4) = 3.2e-39
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE 65
FPY Y Q +M L + LD G +LE PTGTGK+++++ ++ + E
Sbjct: 10 FPYKP-YSIQIDFMNALYQFLDKGGVSMLESPTGTGKSLSIICSALQWLTDRKE 62
Score = 74 (31.1 bits), Expect = 3.2e-39, Sum P(4) = 3.2e-39
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 657 LRQAAQCVGRVIRSKADYGMMIFADKRYSRH-DKRS-------KLPGWILSHL 701
++ Q +GR IR + DY ++ D RYS KR+ KLP WI L
Sbjct: 798 MKAVNQSIGRAIRHEKDYASILLVDARYSNDPSKRTSHSHPSNKLPKWIKDRL 850
Score = 39 (18.8 bits), Expect = 1.8e-26, Sum P(4) = 1.8e-26
Identities = 17/77 (22%), Positives = 36/77 (46%)
Query: 76 TVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACR 135
++H+ + T+++L+ +H +LG +L G +R+ + +++ R +
Sbjct: 364 SMHDAKLTVSQLEDIHCSIESYLGRFQNLLGAG--NRRYI----QIMLILTRAFLKPLAS 417
Query: 136 KRTASWVRA-LAAENPN 151
R S V L ENP+
Sbjct: 418 DRNLSSVNVGLDTENPS 434
>TAIR|locus:2030497 [details] [associations]
symbol:AT1G20720 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 EMBL:CP002684 GO:GO:0005739 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 KO:K15362 OMA:EKELDDS IPI:IPI00524588
RefSeq:NP_173495.5 UniGene:At.51696 ProteinModelPortal:F4HUN4
SMR:F4HUN4 PRIDE:F4HUN4 EnsemblPlants:AT1G20720.1 GeneID:838662
KEGG:ath:AT1G20720 Uniprot:F4HUN4
Length = 1175
Score = 204 (76.9 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 81/296 (27%), Positives = 135/296 (45%)
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAEL-KLLHNYQ-TRHLGPAAKILAIGLSSRKNLCVN 118
+ K E K T++ +T +++ +++ Y+ T + P A +LA SRK+ C N
Sbjct: 135 VEKAETATKKRTKIPTIYYASRTHSQITQVIREYRKTGYRVPMA-VLA----SRKHYCTN 189
Query: 119 SRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP-G---V 174
VL +D+VD CR L + NI+ C F+N K S L P G V
Sbjct: 190 RHVLG---KDNVDDECR--------LLLKDKANIQ-CSEFKNVNKITSHPSLQPRGHNEV 237
Query: 175 YTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFD 234
+ ++DL GK CPYF + M + A +V Y Y+++P + + ++ K ++++FD
Sbjct: 238 HDIEDLVKVGKNVRGCPYFASWSMAENAQLVFCPYSYIVNPVIRAGVEVDL-KGAIIIFD 296
Query: 235 EAHNIDNVCIEALSVSVRRQTL---EGATRNLSRINQEIERFKATDAGRLRAEYNRLVEG 291
EAHN++++ EA S+++ TL + +S I + L + R +
Sbjct: 297 EAHNMEDIAREAGSINLEEDTLFKLQNELEQMSVAQPMIYQPLCEVVEGLISWIGRKKDS 356
Query: 292 LALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETE 347
LA R +W + AL +E NI R E F +L + +R E E
Sbjct: 357 LAKRDFQHYFSSWTGDKAL-----RELEESNITR-ECFPILLECFTKAIRTSKEAE 406
Score = 176 (67.0 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 41/119 (34%), Positives = 61/119 (51%)
Query: 589 DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKE 648
D +GA F +V RGKV+EGIDF R VI+ G+PF L I + + DT++ +
Sbjct: 648 DSKKGAAFLAVCRGKVSEGIDFADDNARAVIIVGIPFP-NLHDIQVGLKKKYNDTYKSSK 706
Query: 649 G-----DFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR 702
++ A R Q GR IR + DYG +IF D+RY R+ + W+ ++
Sbjct: 707 SLLGGSEWYCQQAYRALNQAAGRCIRHRFDYGAIIFLDERYKEQRNRASISKWLRQSIK 765
Score = 123 (48.4 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 34/137 (24%), Positives = 62/137 (45%)
Query: 435 LSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDC-ICPM 493
L C + ++ K + D SV++TSGTLSP++ + L S + + +
Sbjct: 466 LWCMNPAVVFKDLADISLSVILTSGTLSPMNSFSSELGMQFGTSLEAPHVIDPNMQVWAG 525
Query: 494 VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN 553
++ G P++ + GK L E+ +IVP G + FF SY M+++ W
Sbjct: 526 AISNGPSNYPLNASYKTADAYSFQDALGKSLEEICTIVPGGSLVFFPSYKLMEKLCMRWR 585
Query: 554 DSGILKEIMQHKLVFIE 570
++ + K +F+E
Sbjct: 586 ETEQWSRLCLKKDLFVE 602
Score = 96 (38.9 bits), Expect = 1.7e-38, Sum P(4) = 1.7e-38
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAK---GHC--LLEMPTGTGKTIALLSLI 56
++++ + V FPY Y Q ++M + LD GHC LLE PTGTGK+++LL +
Sbjct: 26 VYQIGGLQVEFPYQP-YGTQLAFMSRVISTLDRAQRDGHCHALLESPTGTGKSLSLLCSV 84
Query: 57 TSY 59
++
Sbjct: 85 LAW 87
>UNIPROTKB|J3QSE8 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
ProteinModelPortal:J3QSE8 Ensembl:ENST00000577598 Uniprot:J3QSE8
Length = 994
Score = 227 (85.0 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 72/282 (25%), Positives = 120/282 (42%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
VL C + ++A + + Q++V+TSGTLSP+ + L + + +
Sbjct: 588 VLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVW 647
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+ G + F G LL+ + V GI+CF SY ++++
Sbjct: 648 VGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKER 707
Query: 552 WNDSGILKEIMQHKLVFIETQDVVETTL--ALDNYRKACDC-GR--GAVFFSVARGKVAE 606
W +G+ + K V +E Q +T L Y A G GA+ +V RGKV+E
Sbjct: 708 WLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSE 767
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIK---EG-DFLTFDALRQAAQ 662
G+DF R VI G+PF + + +Y +++ G + A R Q
Sbjct: 768 GLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQ 827
Query: 663 CVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWILSHLR 702
+GR IR + D+G +I D R+ + R S L W+ ++
Sbjct: 828 ALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQ 869
Score = 182 (69.1 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 60/210 (28%), Positives = 101/210 (48%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP--GV---YTLQDLRAF 183
C + + N ++C F+ K + L G+ + +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 344 GKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIER 272
E+ S SV L A L S +N I +
Sbjct: 403 RESASYSVTEVQLRFARDELDSMVNNNIRK 432
Score = 132 (51.5 bits), Expect = 1.4e-37, Sum P(3) = 1.4e-37
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V +YFPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKIYFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALL 57
>SGD|S000005929 [details] [associations]
symbol:CHL1 "Probable DNA helicase" species:4932
"Saccharomyces cerevisiae" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007059 "chromosome segregation"
evidence=IDA] [GO:0003678 "DNA helicase activity" evidence=ISS;IMP]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0007064
"mitotic sister chromatid cohesion" evidence=IGI;IMP;IPI]
[GO:0032508 "DNA duplex unwinding" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0036297 "interstrand cross-link repair" evidence=IGI]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IGI;IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0007535 "donor selection"
evidence=IGI;IMP] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] InterPro:IPR002464 InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 SGD:S000005929
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006270 EMBL:Z71255 EMBL:BK006949 GO:GO:0004003 EMBL:Z48483
EMBL:U33335 GO:GO:0003678 GO:GO:0007064 GO:GO:0045910
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 OMA:NLGRCVV OrthoDB:EOG408RH6 EMBL:X56584
PIR:S12499 RefSeq:NP_015317.1 ProteinModelPortal:P22516 SMR:P22516
DIP:DIP-4044N IntAct:P22516 MINT:MINT-526050 STRING:P22516
PaxDb:P22516 PeptideAtlas:P22516 EnsemblFungi:YPL008W GeneID:856099
KEGG:sce:YPL008W CYGD:YPL008w GeneTree:ENSGT00530000063199
NextBio:981143 Genevestigator:P22516 GermOnline:YPL008W
GO:GO:0007535 GO:GO:0036297 Uniprot:P22516
Length = 861
Score = 250 (93.1 bits), Expect = 3.3e-37, Sum P(3) = 3.3e-37
Identities = 73/282 (25%), Positives = 128/282 (45%)
Query: 439 DASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPM--VLT 496
+ S + + ++ + VV+ GT+ P+ + L N P V +L+ + + P + T
Sbjct: 564 EPSKPFESILNQAKCVVLAGGTMEPMSEF--LSNLLPEVPSEDITTLSCNHVIPKENLQT 621
Query: 497 RGSDQLPVSTKFDMRSDPGVARNY-GKLLVEMVSIVPD--GIVCFFVSYSYMDEIIATWN 553
++Q + F+ R P + N+ + V++ VP GIV FF SY Y+ +I W
Sbjct: 622 YITNQPELEFTFEKRMSPSLVNNHLFQFFVDLSKAVPKKGGIVAFFPSYQYLAHVIQCWK 681
Query: 554 DSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRH 613
+ + + +F E +D + L Y + GRG++ ++ GK++EGI+F
Sbjct: 682 QNDRFATLNNVRKIFYEAKDGDDI---LSGYSDSVAEGRGSLLLAIVGGKLSEGINFQDD 738
Query: 614 YGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEG----------DFLTFDALRQAAQC 663
R V+M G+PF S L+ + ++L G +F+ ++ Q
Sbjct: 739 LCRAVVMVGLPFPNIFSGELIVKRKHLAAKIMKSGGTEEEASRATKEFMENICMKAVNQS 798
Query: 664 VGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAH 705
VGR IR DY + D RY+R + R KL W+ + H
Sbjct: 799 VGRAIRHANDYANIYLLDVRYNRPNFRKKLSRWVQDSINSEH 840
Score = 205 (77.2 bits), Expect = 3.3e-37, Sum P(3) = 3.3e-37
Identities = 52/200 (26%), Positives = 97/200 (48%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQT-RHLGPAAKILAIGLSSRKNLCVNSRVLA 123
+NPVK+ Y +RT ++ + ++L+L + R P K+ + L+S+K LC+N +V+
Sbjct: 228 QNPVKIYYASRTYSQLGQFTSQLRLPSFPSSFRDKVPDEKVKYLPLASKKQLCINPKVMK 287
Query: 124 AENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAF 183
+ ++++ AC S + +N N E+ + A ++ + ++DL
Sbjct: 288 WKTLEAINDACADLRHSKEGCIFYQNTN----EWRHCPDTLALRDMIFSEIQDIEDLVPL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK G CPY+ +R + A VV YQYLL + ++ S+V+ DEAHN+
Sbjct: 344 GKSLGICPYYASREALPIAEVVTLPYQYLLSESTRSSLQINLEN-SIVIIDEAHNLIETI 402
Query: 244 IEALSVSVRRQTLEGATRNL 263
S + + L+ + +
Sbjct: 403 NSIYSSQISLEDLKNCHKGI 422
Score = 78 (32.5 bits), Expect = 3.3e-37, Sum P(3) = 3.3e-37
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 9 TVYFPYDNIYPEQYSYMLELKRAL-DAKGHCLLEMPTGTGKTIALL 53
T Y PY Y Q M + R L + K +LE PTGTGKT++L+
Sbjct: 9 TFYHPYKP-YDIQVQLMETVYRVLSEGKKIAILESPTGTGKTLSLI 53
>UNIPROTKB|Q9BX63 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=NAS] [GO:0003677 "DNA binding" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0000077 "DNA damage checkpoint"
evidence=NAS] [GO:0006302 "double-strand break repair"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=IDA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005737
GO:GO:0000077 GO:GO:0046872 GO:GO:0003677 GO:GO:0031965
GO:GO:0006357 GO:GO:0051539 GO:GO:0004003 GO:GO:0006302 MIM:114480
InterPro:IPR014001 SMART:SM00487 CleanEx:HS_BACH1 Orphanet:145
PDB:1T29 PDBsum:1T29 MIM:227650 Orphanet:84 eggNOG:COG1199
TIGRFAMs:TIGR00604 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:AF360549
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 EMBL:BC101472
EMBL:BC101474 EMBL:AK074713 IPI:IPI00012500 IPI:IPI00514398
RefSeq:NP_114432.2 UniGene:Hs.128903 PDB:3AL3 PDBsum:3AL3
ProteinModelPortal:Q9BX63 SMR:Q9BX63 DIP:DIP-41787N IntAct:Q9BX63
MINT:MINT-275883 STRING:Q9BX63 PhosphoSite:Q9BX63 DMDM:57012613
PaxDb:Q9BX63 PRIDE:Q9BX63 DNASU:83990 Ensembl:ENST00000259008
GeneID:83990 KEGG:hsa:83990 UCSC:uc002izk.2 GeneCards:GC17M059759
H-InvDB:HIX0202529 HGNC:HGNC:20473 HPA:HPA005474 MIM:605882
MIM:609054 neXtProt:NX_Q9BX63 PharmGKB:PA134906421
InParanoid:Q9BX63 EvolutionaryTrace:Q9BX63 GenomeRNAi:83990
NextBio:73148 ArrayExpress:Q9BX63 Bgee:Q9BX63 CleanEx:HS_BRIP1
Genevestigator:Q9BX63 GermOnline:ENSG00000136492 Uniprot:Q9BX63
Length = 1249
Score = 227 (85.0 bits), Expect = 3.5e-37, Sum P(3) = 3.5e-37
Identities = 72/282 (25%), Positives = 120/282 (42%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
VL C + ++A + + Q++V+TSGTLSP+ + L + + +
Sbjct: 588 VLNFWCLNPAVAFSDINGKVQTIVLTSGTLSPMKSFSSELGVTFTIQLEANHIIKNSQVW 647
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+ G + F G LL+ + V GI+CF SY ++++
Sbjct: 648 VGTIGSGPKGRNLCATFQNTETFEFQDEVGALLLSVCQTVSQGILCFLPSYKLLEKLKER 707
Query: 552 WNDSGILKEIMQHKLVFIETQDVVETTL--ALDNYRKACDC-GR--GAVFFSVARGKVAE 606
W +G+ + K V +E Q +T L Y A G GA+ +V RGKV+E
Sbjct: 708 WLSTGLWHNLELVKTVIVEPQGGEKTNFDELLQVYYDAIKYKGEKDGALLVAVCRGKVSE 767
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIK---EG-DFLTFDALRQAAQ 662
G+DF R VI G+PF + + +Y +++ G + A R Q
Sbjct: 768 GLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQ 827
Query: 663 CVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWILSHLR 702
+GR IR + D+G +I D R+ + R S L W+ ++
Sbjct: 828 ALGRCIRHRNDWGALILVDDRFRNNPSRYISGLSKWVRQQIQ 869
Score = 182 (69.1 bits), Expect = 3.5e-37, Sum P(3) = 3.5e-37
Identities = 60/210 (28%), Positives = 101/210 (48%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP--GV---YTLQDLRAF 183
C + + N ++C F+ K + L G+ + +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 344 GKKLKACPYYTARELIQDADIIFCPYNYLLDAQIRESMDLNL-KEQVVILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIER 272
E+ S SV L A L S +N I +
Sbjct: 403 RESASYSVTEVQLRFARDELDSMVNNNIRK 432
Score = 132 (51.5 bits), Expect = 3.5e-37, Sum P(3) = 3.5e-37
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V +YFPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKIYFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALL 57
Score = 38 (18.4 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 491 CPMVLTRGSDQLPVST-KFDMRSDPGVARNYGK 522
CP ++T+ S LP S ++DP GK
Sbjct: 948 CPKIITKNSP-LPSSIISRKEKNDPVFLEEAGK 979
>MGI|MGI:2443590 [details] [associations]
symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0000922 "spindle pole" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0030496 "midbody" evidence=ISO] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster
binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 MGI:MGI:2443590 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005730 GO:GO:0046872 GO:GO:0003677
GO:GO:0051539 GO:GO:0003723 GO:GO:0000790 GO:GO:0004003
GO:GO:0004386 GO:GO:0030496 GO:GO:0000922 GO:GO:0008094
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
HOGENOM:HOG000241266 OMA:NLGRCVV GeneTree:ENSGT00530000063199
GO:GO:0007062 HOVERGEN:HBG058884 OrthoDB:EOG4B5P4M CTD:1663
EMBL:BC079656 IPI:IPI00460651 RefSeq:NP_001003919.1
UniGene:Mm.259605 ProteinModelPortal:Q6AXC6 SMR:Q6AXC6
STRING:Q6AXC6 PhosphoSite:Q6AXC6 PRIDE:Q6AXC6
Ensembl:ENSMUST00000163605 GeneID:320209 KEGG:mmu:320209
UCSC:uc008dha.1 InParanoid:Q6AXC6 NextBio:396263 Bgee:Q6AXC6
Genevestigator:Q6AXC6 GermOnline:ENSMUSG00000035842 Uniprot:Q6AXC6
Length = 880
Score = 305 (112.4 bits), Expect = 4.2e-37, Sum P(3) = 4.2e-37
Identities = 79/265 (29%), Positives = 126/265 (47%)
Query: 452 QSVVITSGTLSPI-DLYPRLLNFHPV-VSRSFKMS----LTRDCICPMVLTRGSDQLPVS 505
++VVI GT+ P+ D +LL V R + S + D I P+++ G +
Sbjct: 586 RAVVIAGGTMQPMSDFREQLLACSGVEAGRVVEFSCGHVIPPDNILPLIICSGPSNQQLE 645
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ R P + G++L + ++VP G+VCF SY Y+ ++ A W+ +G+L + K
Sbjct: 646 FTYQRRELPQMVEETGRILCNLCNVVPGGVVCFLPSYEYLRQVHAHWDKTGLLTRLSVRK 705
Query: 566 LVFIETQDVVETTLALDNYRKAC-DCGR------GAVFFSVARGKVAEGIDFDRHYGRLV 618
+F E + + L Y K C GA+ SV GK++EGI+F GR V
Sbjct: 706 KIFQEPKRASQVEQVLMAYSKCIMSCSHSEGHLTGALLLSVVGGKMSEGINFSDDLGRCV 765
Query: 619 IMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDAL------RQAAQCVGRVIRSKA 672
+M G+P+ S L ++ YL T +G L L + Q +GR IR +
Sbjct: 766 VMVGMPYPNIKSPELQEKMAYLNQTLPRTQGQPLPGTVLIENLCMKAINQSIGRAIRHQR 825
Query: 673 DYGMMIFADKRYSRHDKRSKLPGWI 697
D+ ++ D RY+R +KLP WI
Sbjct: 826 DFASIVLLDHRYARPSILAKLPAWI 850
Score = 141 (54.7 bits), Expect = 4.2e-37, Sum P(3) = 4.2e-37
Identities = 57/219 (26%), Positives = 95/219 (43%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAE-LKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA 123
E+ K+ YC+RT ++ + + E LK +TR + L SR+ LCVN V
Sbjct: 196 EHITKIYYCSRTHSQLAQFVREVLKSPFGKETR---------LVSLGSRQTLCVNEDVKN 246
Query: 124 AENRDSVDAAC--RKRTASWVRALAAENPN-----IET-CEFFENYEKAASAAVLPPGVY 175
+ ++ C +R+ + P I+T C F+ + + + V
Sbjct: 247 LGSVQLMNDRCVDMQRSKREKNGTGEDKPKRKRQKIQTSCPFYNHEQMELLRDEILLEVK 306
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
++ L A GK+ CPY+ +R + A +VV Y LL +Q + VV+ DE
Sbjct: 307 DMEQLVALGKEARACPYYGSRFAIPAAQLVVLPYPMLLHAATRQAAGIRLQGQ-VVIIDE 365
Query: 236 AHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFK 274
AHN+ + S V L A S++ Q +ER++
Sbjct: 366 AHNLIDTITNIHSTEVNGSQLCQAH---SQLLQYMERYR 401
Score = 82 (33.9 bits), Expect = 4.2e-37, Sum P(3) = 4.2e-37
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 10 VYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
++FP+ YP Q +M EL + L+ + E PTGTGK+++L+
Sbjct: 11 IHFPFPFPPYPIQKDFMAELYKVLEGGKIGIFESPTGTGKSLSLI 55
Score = 48 (22.0 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 19/72 (26%), Positives = 27/72 (37%)
Query: 29 KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88
K +L C + PT T + +T +V K E + HE E+T A L+
Sbjct: 88 KNSLLTSSSC--QEPTDTPRPAGEPDWVTEFVQKKEERDLVERLREEQKHEEEETEALLR 145
Query: 89 LLHNYQTRHLGP 100
L GP
Sbjct: 146 LSREMLDAGTGP 157
>UNIPROTKB|B4I0K4 [details] [associations]
symbol:GM12432 "Regulator of telomere elongation helicase 1
homolog" species:7238 "Drosophila sechellia" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 EMBL:CH480819 GO:GO:0010569
TIGRFAMs:TIGR00604 KO:K11136 OrthoDB:EOG4S4MX7
RefSeq:XP_002036876.1 EnsemblMetazoa:FBtr0195417 GeneID:6612367
KEGG:dse:Dsec_GM12432 FlyBase:FBgn0167369 Uniprot:B4I0K4
Length = 966
Score = 343 (125.8 bits), Expect = 6.2e-37, Sum P(3) = 6.2e-37
Identities = 83/280 (29%), Positives = 148/280 (52%)
Query: 432 VLQLSCHDASLAVKPVFD-RFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMS--LTRD 488
++ C + ++ + + + +SV++TSGTL+P L P + V++ + + +
Sbjct: 434 IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAP--LKPLIAELAIPVAQHLENPHIVDQS 491
Query: 489 CICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEI 548
+ ++ G D+ + + + R +P + G+ ++ + IVPDG++ FF SY +++
Sbjct: 492 QVYVKIIGTGPDRQQLISNYANRDNPKYVSSLGQTILNVARIVPDGLLVFFPSYPMLNKC 551
Query: 549 IATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGI 608
+ W SG+ +I K +F+E + + T ++ + +A +GAVF +V RGKV+EG+
Sbjct: 552 VDAWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVSEGL 611
Query: 609 DFDRHYGRLVIMFGVPFQYTLS-KILLAR--LEYLRDTF-QIKEG-DFLTFDALRQAAQC 663
DF GR VI+ G+PF K++L R LE R Q+ G ++ DA R Q
Sbjct: 612 DFADRNGRAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLSGQEWYNLDATRAVNQA 671
Query: 664 VGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRD 703
+GRVIR + DYG ++ D R+ + +L WI HL D
Sbjct: 672 IGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGD 711
Score = 95 (38.5 bits), Expect = 6.2e-37, Sum P(3) = 6.2e-37
Identities = 21/65 (32%), Positives = 42/65 (64%)
Query: 8 VTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-EN 66
+ V+FP++ YP Q +YM ++ L + +LE PTGTGKT++LL +++ ++ E+
Sbjct: 9 IPVHFPFEP-YPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQSEH 67
Query: 67 PVKLI 71
++++
Sbjct: 68 QMQMV 72
Score = 87 (35.7 bits), Expect = 6.2e-37, Sum P(3) = 6.2e-37
Identities = 51/266 (19%), Positives = 106/266 (39%)
Query: 102 AKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENY 161
A + ++ L SR LC++ V+ + C+ R S +TC F
Sbjct: 132 ANMRSVVLGSRDQLCIHPEVMRELGNSNKTNMCKLRVHS------------KTCSFQMRV 179
Query: 162 EKAASAAVLP-PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGI 220
E L P + ++DL G++ CPYF +R + + + + + +LD + I
Sbjct: 180 ESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELARANKIELGNTIVILD-EAHNI 238
Query: 221 --ISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIERFKATDA 278
I +E + D A I+++ +R+ G +++++ E + F D
Sbjct: 239 EKICEEYASVQIKSSDVAMTIEDI------THIRQVFASGESQDMA--GDEPKDFTLDDL 290
Query: 279 GRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAV-PGNIR--RAEHFLHVLRR 335
L+ L + + + + D + P+ ++ E + N + +L +
Sbjct: 291 TLLKEMLLELEKAI----DAVVVDNAVDGTTFPASMMYELLGKANFTYGNVASIISLLDK 346
Query: 336 LVQYLRGRLETENVEKEGPVSFVASI 361
LVQYL + ++ K G + ++ +
Sbjct: 347 LVQYLLVASQQMSIRKGGTFTLLSDL 372
Score = 62 (26.9 bits), Expect = 2.5e-34, Sum P(3) = 2.5e-34
Identities = 19/72 (26%), Positives = 35/72 (48%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+IY +RT ++ + + ELK +T + A + ++ L SR LC++ V+
Sbjct: 108 KVIYASRTHSQLTQAMRELK-----RTAY----ANMRSVVLGSRDQLCIHPEVMRELGNS 158
Query: 129 SVDAACRKRTAS 140
+ C+ R S
Sbjct: 159 NKTNMCKLRVHS 170
Score = 46 (21.3 bits), Expect = 2.7e-27, Sum P(2) = 2.7e-27
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 41 EMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78
+M G T LLS + + V + E+ + +Y + VH
Sbjct: 357 QMSIRKGGTFTLLSDLLTIVFANKEDVMSKVYASFKVH 394
>UNIPROTKB|F1NN99 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0000922 "spindle pole" evidence=IEA] [GO:0007062
"sister chromatid cohesion" evidence=IEA] [GO:0030496 "midbody"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:AADN02006472
EMBL:AADN02006473 IPI:IPI00575083 IntAct:F1NN99
Ensembl:ENSGALT00000021158 Uniprot:F1NN99
Length = 908
Score = 308 (113.5 bits), Expect = 7.1e-36, Sum P(2) = 7.1e-36
Identities = 79/269 (29%), Positives = 131/269 (48%)
Query: 452 QSVVITSGTLSPI-DLYPRLLNFHPV-VSRSFKMS----LTRDCICPMVLTRGSDQLPVS 505
++V+I GT+ P+ D +LL++ V +R + S + + I P++L G +
Sbjct: 619 RAVIIAGGTMQPVADFREQLLSYAGVDPARIVEFSCGHVIPPENILPIILCSGPSNQQLE 678
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ R P + G++L + ++VP G+VCFF SY Y ++ A W +G+L + K
Sbjct: 679 FTYQTRDLPQMMDETGRILCNLCNVVPGGVVCFFPSYDYEKQVYAHWEKTGLLTRLATKK 738
Query: 566 LVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRHYGRLV 618
+F E + + L Y K CG+ GA+ SV GK++EGI+F GR V
Sbjct: 739 KIFQEPKKANQVEQVLAEYAKCIKRCGQAGGQMTGALLLSVVGGKMSEGINFSDDLGRCV 798
Query: 619 IMFGVPFQYTLSKILLARLEYL-----RDTFQIKEGDFLTFDALRQAAQCVGRVIRSKAD 673
IM G+P+ S L ++ +L R Q + ++ Q +GR IR + D
Sbjct: 799 IMVGMPYPNIKSPELQEKMTWLDKTMPRSASQAPSRVLIENLCMKAVNQSIGRAIRHQKD 858
Query: 674 YGMMIFADKRYSRHDKRSKLPGWILSHLR 702
Y ++ D RY+R +KLP WI ++
Sbjct: 859 YASILLLDHRYARPAILNKLPQWIRERIQ 887
Score = 164 (62.8 bits), Expect = 7.1e-36, Sum P(2) = 7.1e-36
Identities = 59/200 (29%), Positives = 92/200 (46%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E+ K+ YC+RT ++ + +H Q G +++++G SR+NLCVN V
Sbjct: 225 EHVTKIYYCSRTHSQLSQ------FVHEVQKSPFGKDTRLVSLG--SRQNLCVNEEVRRL 276
Query: 125 ENRDSVDAAC-----RKRTASWVRALAAENPNIE--TCEFFENYEKAASAA--VLPPGVY 175
++ C K + + + C F+ +YE+ VL V
Sbjct: 277 GALQLINDRCTEMQKNKHEKKSDAEVEGKKRRVSRTVCPFY-SYEQMQFLRDEVLVE-VK 334
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDP---KVAGIISKEMQKESVVV 232
++ L GK+ CPY+ +R+ + A +VV YQ LL AGII K+ VV+
Sbjct: 335 DIEQLVTLGKETKACPYYGSRYAIPAAQLVVLPYQMLLHEATRSAAGIILKDQ----VVI 390
Query: 233 FDEAHN-IDNV-CIEALSVS 250
DEAHN ID + CI + VS
Sbjct: 391 IDEAHNLIDTITCIYSAEVS 410
Score = 38 (18.4 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 239 IDNVCIEALSVSVRR 253
I+N+C++A++ S+ R
Sbjct: 837 IENLCMKAVNQSIGR 851
>UNIPROTKB|F1SK84 [details] [associations]
symbol:DDX11 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030496 "midbody" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000922 "spindle pole"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677
GO:GO:0000790 GO:GO:0004003 GO:GO:0030496 GO:GO:0000922
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:CU861969
Ensembl:ENSSSCT00000000809 OMA:HQISKRD Uniprot:F1SK84
Length = 682
Score = 316 (116.3 bits), Expect = 7.6e-36, Sum P(2) = 7.6e-36
Identities = 83/265 (31%), Positives = 129/265 (48%)
Query: 452 QSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
++VVI GT+ P+ D +LL VV S + D I P+V+ G +
Sbjct: 384 RAVVIAGGTMQPVSDFREQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGPANQQLE 443
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ R P + G++L + ++VP G+VCFF SY Y ++ A W+ SG+L + K
Sbjct: 444 FTYQKRELPQMMDETGRILCNLCNVVPGGVVCFFPSYEYQRQVHAHWDRSGLLARLAVRK 503
Query: 566 LVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRHYGRLV 618
+F E + + L Y + CG+ GA+ SV GK++EGI+F GR V
Sbjct: 504 KIFQEPKRANQVEQVLKEYSRCIKHCGQAEGMVTGALLLSVVGGKMSEGINFSDSLGRCV 563
Query: 619 IMFGVPFQYTLSKILLARLEYLRDTF-----QIKEGDFLTFDALRQAA-QCVGRVIRSKA 672
+M G+P+ S L ++ YL T Q G L + +A Q +GR IR +
Sbjct: 564 VMVGMPYPNIRSAELQEKMAYLDQTLPRAPGQAAPGKALVENLCMKAVNQSIGRAIRHQK 623
Query: 673 DYGMMIFADKRYSRHDKRSKLPGWI 697
D+ ++ D+RY+R +KLP WI
Sbjct: 624 DFASIVLLDQRYARPPILAKLPAWI 648
Score = 150 (57.9 bits), Expect = 7.6e-36, Sum P(2) = 7.6e-36
Identities = 56/217 (25%), Positives = 96/217 (44%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
++ YC+RT H LA+ +H Q G +++++G SR+NLCVN V +
Sbjct: 1 QIYYCSRT-HSQ---LAQF--VHEVQRSPFGKDTRLVSLG--SRQNLCVNDDVRKLGSVQ 52
Query: 129 SVDAAC--------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDL 180
++ C K A + + C F+ + + G ++ L
Sbjct: 53 LINDRCVDMQRSRREKSIAEEAKPRRRKQEQRTACPFYSHERLQLLRDEVLVGAKDIEQL 112
Query: 181 RAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI- 239
A GK+ CPY+ +R + A +VV YQ +L +Q + VV+ DEAHN+
Sbjct: 113 VALGKEARACPYYGSRFAIPAAQLVVLPYQMVLHAATRQAAGIRLQGQ-VVLVDEAHNLM 171
Query: 240 DNVC-IEALSVSVRRQTLEGATRNLSRINQEIERFKA 275
D + I ++ VS Q + ++ L + + +R KA
Sbjct: 172 DTITGIHSVEVS-GSQLCQAHSQLLQYMERYGKRLKA 207
>UNIPROTKB|Q96FC9 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IDA] [GO:0000790 "nuclear chromatin"
evidence=IDA] [GO:0030496 "midbody" evidence=IDA] [GO:0000922
"spindle pole" evidence=IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0004386 "helicase activity"
evidence=IDA] [GO:0000086 "G2/M transition of mitotic cell cycle"
evidence=TAS] [GO:0000070 "mitotic sister chromatid segregation"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0003678 "DNA helicase activity" evidence=TAS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006987
"activation of signaling protein activity involved in unfolded
protein response" evidence=TAS] [GO:0030968 "endoplasmic reticulum
unfolded protein response" evidence=TAS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 Reactome:REACT_116125 GO:GO:0000086 GO:GO:0019048
GO:GO:0005654 GO:GO:0006987 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008284 GO:GO:0051539 GO:GO:0003723
GO:GO:0000790 GO:GO:0000070 GO:GO:0004003 GO:GO:0030496
GO:GO:0000922 GO:GO:0000084 GO:GO:0003678 GO:GO:0008094
eggNOG:COG1199 KO:K11273 PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604
CleanEx:HS_CHL1 OMA:NLGRCVV GO:GO:0007062 HOVERGEN:HBG058884
OrthoDB:EOG4B5P4M EMBL:X99583 EMBL:U33833 EMBL:U75967 EMBL:U75968
EMBL:BC050069 EMBL:BC050522 IPI:IPI00012188 IPI:IPI00332293
IPI:IPI00657836 IPI:IPI00658184 IPI:IPI00942296 PIR:G02071
RefSeq:NP_001244073.1 RefSeq:NP_001244074.1 RefSeq:NP_004390.3
RefSeq:NP_689651.1 UniGene:Hs.443960 ProteinModelPortal:Q96FC9
SMR:Q96FC9 IntAct:Q96FC9 MINT:MINT-1371028 STRING:Q96FC9
PhosphoSite:Q96FC9 DMDM:74731686 PaxDb:Q96FC9 PRIDE:Q96FC9
DNASU:1663 Ensembl:ENST00000228264 Ensembl:ENST00000251758
Ensembl:ENST00000350437 Ensembl:ENST00000407793
Ensembl:ENST00000435753 Ensembl:ENST00000542838
Ensembl:ENST00000545668 GeneID:1663 KEGG:hsa:1663 UCSC:uc001rjr.1
UCSC:uc001rjs.1 UCSC:uc001rjt.1 UCSC:uc001rju.1 CTD:1663
GeneCards:GC12P031226 HGNC:HGNC:2736 MIM:601150 MIM:613398
neXtProt:NX_Q96FC9 Orphanet:280558 PharmGKB:PA27201
InParanoid:Q96FC9 PhylomeDB:Q96FC9 GenomeRNAi:1663 NextBio:6842
ArrayExpress:Q96FC9 Bgee:Q96FC9 CleanEx:HS_DDX11
Genevestigator:Q96FC9 GermOnline:ENSG00000013573 Uniprot:Q96FC9
Length = 970
Score = 265 (98.3 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 69/211 (32%), Positives = 103/211 (48%)
Query: 452 QSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
++VVI GT+ P+ D +LL VV S + D I P+V+ G P+
Sbjct: 614 RAVVIAGGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGISNQPLE 673
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
F R P + G++L + +VP G+VCFF SY Y+ ++ A W G+L + K
Sbjct: 674 FTFQKRELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARK 733
Query: 566 LVFIETQD---VVETTLALDNYRKACDCGRG----AVFFSVARGKVAEGIDFDRHYGRLV 618
+F E + V + LA +AC RG A+ SV GK++EGI+F + GR V
Sbjct: 734 KIFQEPKSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDNLGRCV 793
Query: 619 IMFGVPFQYTLSKILLARLEYLRDTFQIKEG 649
+M G+PF S L ++ YL T + G
Sbjct: 794 VMVGMPFPNIRSAELQEKMAYLDQTLSPRPG 824
Score = 164 (62.8 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 63/245 (25%), Positives = 108/245 (44%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E+ K+ YC+RT H LA+ +H + G +++++G SR+NLCVN V +
Sbjct: 224 EHITKIYYCSRT-HSQ---LAQF--VHEVKKSPFGKDVRLVSLG--SRQNLCVNEDVKSL 275
Query: 125 ENRDSVDAAC---------RKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPGVY 175
+ ++ C +K+ A + C F+ + + V
Sbjct: 276 GSVQLINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAEVK 335
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDE 235
++ L A GK+ CPY+ +R + A +VV YQ LL +Q + VV+ DE
Sbjct: 336 DMEQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRLQ-DQVVIIDE 394
Query: 236 AHNIDNVCIEALSVSVR-RQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLA- 293
AHN+ + SV V Q + ++ L + + +R KA + L+ L + +A
Sbjct: 395 AHNLIDTITGMHSVEVSGSQLCQAHSQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAV 454
Query: 294 LRGNL 298
L GN+
Sbjct: 455 LGGNI 459
Score = 89 (36.4 bits), Expect = 1.6e-35, Sum P(3) = 1.6e-35
Identities = 27/79 (34%), Positives = 42/79 (53%)
Query: 10 VYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL----LSLITSYVLSKP 64
++FP+ Y Q +M EL R L+A + E PTGTGK+++L LS + + K
Sbjct: 11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKKR 70
Query: 65 ENPVKLIYC-TRTVHEMEK 82
E +L+ T +H+ EK
Sbjct: 71 EEEARLLETGTGPLHD-EK 88
>UNIPROTKB|J9NVZ8 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:AAEX03006594 EMBL:AAEX03006595
EMBL:AAEX03006596 Ensembl:ENSCAFT00000045493 Uniprot:J9NVZ8
Length = 1214
Score = 220 (82.5 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 73/282 (25%), Positives = 119/282 (42%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
VL C + ++A + + ++V+TSGTLSP+ + L + + +
Sbjct: 587 VLNFWCLNPAVAFSDINGKVLTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVW 646
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+ G + F G LL+ + V GI+CF SY ++++
Sbjct: 647 VGTIGSGPKGRNLCATFQHTETFEFQDEVGALLLSVCQTVNQGILCFLPSYKLLEKLKER 706
Query: 552 WNDSGILKEIMQHKLVFIETQDVVETTL--ALDNYRKACDC-GR--GAVFFSVARGKVAE 606
W +G+ + K V +E Q +T L Y A G GA+ +V RGKV+E
Sbjct: 707 WLYTGLWHNLELVKTVIVEPQGGEKTDFNELLQVYYDAIKYKGEKDGALLVAVCRGKVSE 766
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIK---EG-DFLTFDALRQAAQ 662
G+DF R VI G+PF + + +Y +++ G + A R Q
Sbjct: 767 GLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDQHSKLRGLLPGRQWYEIQAYRALNQ 826
Query: 663 CVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWILSHLR 702
+GR IR K D+G +I D R+ + R S L WI ++
Sbjct: 827 ALGRCIRHKNDWGALILVDDRFRSNPSRYISGLSKWIRQQIQ 868
Score = 179 (68.1 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 59/210 (28%), Positives = 102/210 (48%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 244 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 294
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP--GV---YTLQDLRAF 183
C + + N ++C F+ K ++ L G+ + +++L +
Sbjct: 295 E---KCME---------LLDGKNGKSCYFYHGVHKISNQHTLQTLQGMCKAWDIEELVSL 342
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR +++ A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 343 GKKLKACPYYTARELIEDAHIIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCA 401
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIER 272
E+ S SV L A L S +N I +
Sbjct: 402 RESASYSVTEVQLRFARDELDSMVNNNIRK 431
Score = 123 (48.4 bits), Expect = 3.2e-35, Sum P(3) = 3.2e-35
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V + FPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKITFPY-KAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALL 57
Score = 41 (19.5 bits), Expect = 1.6e-16, Sum P(3) = 1.6e-16
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKE 352
+ D + SNP+ L + + I+ F L L + R + NV KE
Sbjct: 844 VDDRFRSNPSRYISGLSKWIRQQIQHHSTFESALESLSDFSRKHQKVINVSKE 896
>UNIPROTKB|E2RHN5 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0031965 "nuclear membrane" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 OMA:GVHKISD EMBL:AAEX03006594
EMBL:AAEX03006595 EMBL:AAEX03006596 Ensembl:ENSCAFT00000028135
Uniprot:E2RHN5
Length = 1244
Score = 220 (82.5 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 73/282 (25%), Positives = 119/282 (42%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
VL C + ++A + + ++V+TSGTLSP+ + L + + +
Sbjct: 588 VLNFWCLNPAVAFSDINGKVLTIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVW 647
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+ G + F G LL+ + V GI+CF SY ++++
Sbjct: 648 VGTIGSGPKGRNLCATFQHTETFEFQDEVGALLLSVCQTVNQGILCFLPSYKLLEKLKER 707
Query: 552 WNDSGILKEIMQHKLVFIETQDVVETTL--ALDNYRKACDC-GR--GAVFFSVARGKVAE 606
W +G+ + K V +E Q +T L Y A G GA+ +V RGKV+E
Sbjct: 708 WLYTGLWHNLELVKTVIVEPQGGEKTDFNELLQVYYDAIKYKGEKDGALLVAVCRGKVSE 767
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIK---EG-DFLTFDALRQAAQ 662
G+DF R VI G+PF + + +Y +++ G + A R Q
Sbjct: 768 GLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDQHSKLRGLLPGRQWYEIQAYRALNQ 827
Query: 663 CVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWILSHLR 702
+GR IR K D+G +I D R+ + R S L WI ++
Sbjct: 828 ALGRCIRHKNDWGALILVDDRFRSNPSRYISGLSKWIRQQIQ 869
Score = 179 (68.1 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 59/210 (28%), Positives = 102/210 (48%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 245 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 295
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP--GV---YTLQDLRAF 183
C + + N ++C F+ K ++ L G+ + +++L +
Sbjct: 296 E---KCME---------LLDGKNGKSCYFYHGVHKISNQHTLQTLQGMCKAWDIEELVSL 343
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR +++ A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 344 GKKLKACPYYTARELIEDAHIIFCPYNYLLDAQIRESMDINL-KEQVVILDEAHNIEDCA 402
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIER 272
E+ S SV L A L S +N I +
Sbjct: 403 RESASYSVTEVQLRFARDELDSMVNNNIRK 432
Score = 123 (48.4 bits), Expect = 3.5e-35, Sum P(3) = 3.5e-35
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V + FPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKITFPY-KAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALL 57
Score = 41 (19.5 bits), Expect = 1.8e-16, Sum P(3) = 1.8e-16
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 300 IADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKE 352
+ D + SNP+ L + + I+ F L L + R + NV KE
Sbjct: 845 VDDRFRSNPSRYISGLSKWIRQQIQHHSTFESALESLSDFSRKHQKVINVSKE 897
>UNIPROTKB|E1C1X9 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 EMBL:AADN02025783
IPI:IPI00820128 Ensembl:ENSGALT00000008466 ArrayExpress:E1C1X9
Uniprot:E1C1X9
Length = 1249
Score = 225 (84.3 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 78/301 (25%), Positives = 130/301 (43%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
+L C + ++A + D ++VV+TSGTLSP+D + L + + +
Sbjct: 599 MLNFWCLNPAVAFSDLND-VRTVVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQVW 657
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+ G + + F G LL+ + V GI+CF SY +D++
Sbjct: 658 VGTIGTGPNGRKLCATFQHTETFEFQDEVGALLLSVCQKVGQGILCFLPSYKLLDKLKDR 717
Query: 552 WNDSGILKEIMQHKLVFIETQDVVETTL--ALDNYRKACDC-GR--GAVFFSVARGKVAE 606
W +G+ + + K V E Q ++ L Y A G GA+ +V RGKV+E
Sbjct: 718 WIHTGLWRNLELVKTVIAEPQGGAKSDFDELLKIYYDAIKFKGEKDGALLIAVCRGKVSE 777
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEG-----DFLTFDALRQAA 661
G+DF R VI G+PF + + +Y D + G + A R
Sbjct: 778 GLDFCDENARAVITIGIPFPNVKDLQVELKRKY-NDQHKTTRGLLPGSQWYEIQAYRALN 836
Query: 662 QCVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWILSHLRDAHLNLSTDM-ALHIAR 718
Q +GR IR ++D+G +I D R+ + + + L WI ++ H N + + +LH
Sbjct: 837 QALGRCIRHRSDWGALILVDDRFRNNPNKYITGLSKWIRQQVQH-HENFGSALESLHAFA 895
Query: 719 E 719
E
Sbjct: 896 E 896
Score = 179 (68.1 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 65/221 (29%), Positives = 105/221 (47%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + ELK +T + G IL SSR C++ V+++ N +
Sbjct: 254 KIFFGTRTHKQIAQITRELK-----RTAYSGVPMTIL----SSRDYTCIHP-VVSSSNSN 303
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG-----VYTLQDLRAF 183
+ C V L E + ++C ++ K + L + ++DL +
Sbjct: 304 R-NELC-------VELL--EGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIEDLVSL 353
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPYF AR ++ A++V Y YLLDP++ + + K VV+ DEAHNI++
Sbjct: 354 GKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINL-KGQVVILDEAHNIEDSA 412
Query: 244 IEALSVSVRRQTLEGATRNLS-RINQEIERFKATDAGRLRA 283
EA+S SV L A L +N I + D +LRA
Sbjct: 413 REAVSYSVTESQLNAAREELDFMVNNNIRQ---KDHEQLRA 450
Score = 110 (43.8 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V + FP YP Q + M + + L+ + HCLLE PTG+GK++ALL S+ S
Sbjct: 8 YTIGGVKIMFPC-KAYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSALSWQQS 66
Query: 63 KPENPVKLIYCTRTVHEMEKTL 84
E + C + E +L
Sbjct: 67 LYEKSLLKSSCEKEDREPAASL 88
>UNIPROTKB|Q3YK19 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein homolog"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0031965 "nuclear
membrane" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005737 GO:GO:0005654 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0006357 GO:GO:0051539 GO:GO:0004003
Reactome:REACT_115612 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:DQ109581 IPI:IPI00593256
RefSeq:NP_001028230.1 UniGene:Gga.17801 ProteinModelPortal:Q3YK19
STRING:Q3YK19 Ensembl:ENSGALT00000039225 GeneID:417642
KEGG:gga:417642 CTD:83990 HOGENOM:HOG000068083 HOVERGEN:HBG081519
InParanoid:Q3YK19 KO:K15362 OMA:GYETSCK OrthoDB:EOG4J6RQ8
NextBio:20820915 ArrayExpress:Q3YK19 Uniprot:Q3YK19
Length = 1252
Score = 225 (84.3 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 78/301 (25%), Positives = 130/301 (43%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
+L C + ++A + D ++VV+TSGTLSP+D + L + + +
Sbjct: 599 MLNFWCLNPAVAFSDLND-VRTVVLTSGTLSPMDSFSSELGVKFSIQLEANHVIRNSQVW 657
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+ G + + F G LL+ + V GI+CF SY +D++
Sbjct: 658 VGTIGTGPNGRKLCATFQHTETFEFQDEVGALLLSVCQKVGQGILCFLPSYKLLDKLKDR 717
Query: 552 WNDSGILKEIMQHKLVFIETQDVVETTL--ALDNYRKACDC-GR--GAVFFSVARGKVAE 606
W +G+ + + K V E Q ++ L Y A G GA+ +V RGKV+E
Sbjct: 718 WIHTGLWRNLELVKTVIAEPQGGAKSDFDELLKIYYDAIKFKGEKDGALLIAVCRGKVSE 777
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEG-----DFLTFDALRQAA 661
G+DF R VI G+PF + + +Y D + G + A R
Sbjct: 778 GLDFCDENARAVITIGIPFPNVKDLQVELKRKY-NDQHKTTRGLLPGSQWYEIQAYRALN 836
Query: 662 QCVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWILSHLRDAHLNLSTDM-ALHIAR 718
Q +GR IR ++D+G +I D R+ + + + L WI ++ H N + + +LH
Sbjct: 837 QALGRCIRHRSDWGALILVDDRFRNNPNKYITGLSKWIRQQVQH-HENFGSALESLHAFA 895
Query: 719 E 719
E
Sbjct: 896 E 896
Score = 179 (68.1 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 65/221 (29%), Positives = 105/221 (47%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + ELK +T + G IL SSR C++ V+++ N +
Sbjct: 254 KIFFGTRTHKQIAQITRELK-----RTAYSGVPMTIL----SSRDYTCIHP-VVSSSNSN 303
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPPG-----VYTLQDLRAF 183
+ C V L E + ++C ++ K + L + ++DL +
Sbjct: 304 R-NELC-------VELL--EGKHGKSCLYYHGVHKLSEHYALQSAHNTYQAWDIEDLVSL 353
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPYF AR ++ A++V Y YLLDP++ + + K VV+ DEAHNI++
Sbjct: 354 GKKLRACPYFAARELMVGADIVFCPYNYLLDPQIRESMEINL-KGQVVILDEAHNIEDSA 412
Query: 244 IEALSVSVRRQTLEGATRNLS-RINQEIERFKATDAGRLRA 283
EA+S SV L A L +N I + D +LRA
Sbjct: 413 REAVSYSVTESQLNAAREELDFMVNNNIRQ---KDHEQLRA 450
Score = 110 (43.8 bits), Expect = 2.3e-34, Sum P(3) = 2.3e-34
Identities = 27/82 (32%), Positives = 42/82 (51%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V + FP YP Q + M + + L+ + HCLLE PTG+GK++ALL S+ S
Sbjct: 8 YTIGGVKIMFPC-KAYPSQLAMMNAIVKGLNNRQHCLLESPTGSGKSLALLCSALSWQQS 66
Query: 63 KPENPVKLIYCTRTVHEMEKTL 84
E + C + E +L
Sbjct: 67 LYEKSLLKSSCEKEDREPAASL 88
>UNIPROTKB|D4ACW5 [details] [associations]
symbol:Brip1 "Protein Brip1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 RGD:1307659
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 InterPro:IPR014001
SMART:SM00487 TIGRFAMs:TIGR00604 OrthoDB:EOG4J6RQ8 IPI:IPI00372668
Ensembl:ENSRNOT00000038829 ArrayExpress:D4ACW5 Uniprot:D4ACW5
Length = 1170
Score = 228 (85.3 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 73/282 (25%), Positives = 122/282 (43%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
VL C + ++A + D+ +++V+TSGTLSP+ + L + ++ +
Sbjct: 589 VLNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSELGVTFNIQLEANHVISNSQVW 648
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+ G + F G LL+ + V GI+CF SY ++++
Sbjct: 649 VGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKLRER 708
Query: 552 WNDSGILKEIMQHKLVFIETQDVVETTL--ALDNYRKACDC-GR--GAVFFSVARGKVAE 606
W +G+ + K V E Q +T L Y A G GA+ +V RGKV+E
Sbjct: 709 WIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVCRGKVSE 768
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIK---EG-DFLTFDALRQAAQ 662
G+DF R VI G+PF + + +Y +++ G + A R Q
Sbjct: 769 GLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQ 828
Query: 663 CVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWILSHLR 702
+GR IR K D+G +I D R++ + R S L W+ ++
Sbjct: 829 ALGRCIRHKNDWGALILVDDRFNNNPDRYISGLSKWVRQQIQ 870
Score = 168 (64.2 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 57/210 (27%), Positives = 100/210 (47%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 246 KIYFGTRTHKQIAQITRELR-----KTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 296
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP--PGV---YTLQDLRAF 183
C + + + ++C F+ + ++ L G+ + +++L +
Sbjct: 297 E---KCME---------LLDGKHGKSCYFYHGVHRISNQQTLQFLHGISKAWDIEELVSL 344
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ AR ++ A+++ Y YLLD ++ + ++ KE VV+ DEAHNI+
Sbjct: 345 GRKLKACPYYTARELIDSADIIFCPYNYLLDSQIRESMDIKL-KEQVVILDEAHNIEECA 403
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIER 272
E S SV L A L S IN I +
Sbjct: 404 RETASYSVTEVQLRFARDELDSLINSNIRK 433
Score = 116 (45.9 bits), Expect = 2.7e-34, Sum P(3) = 2.7e-34
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V ++FP YP Q + M + R L++ HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKIHFPC-RAYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 KPENPV 68
PV
Sbjct: 67 LTGKPV 72
>ASPGD|ASPL0000038959 [details] [associations]
symbol:AN10414 species:162425 "Emericella nidulans"
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 EMBL:BN001306 GO:GO:0004003
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
EnsemblFungi:CADANIAT00009590 Uniprot:C8VHC2
Length = 841
Score = 291 (107.5 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
Identities = 77/285 (27%), Positives = 133/285 (46%)
Query: 445 KPVFDRFQSVVITSGTLSPI-DLYPRLLNFHP---VVSRSFKMSLTRDCICPMVLTRGSD 500
+ + + ++V++ GT+SP+ D L ++ P + + S+ + + + L RG
Sbjct: 530 REIVEDARAVILAGGTMSPMSDYLNHLFSYVPKDRLNTFSYGHVIPSENLTAHTLARGVT 589
Query: 501 QLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-------N 553
+ R + + G+ ++ +PDGIV FF SY Y+ ++ W N
Sbjct: 590 GCEFDFTYAGRDAEKMILDLGRTFTQLCRAIPDGIVAFFPSYEYLSRVLNIWKNAVVREN 649
Query: 554 DSGILKEIMQHKLVFIETQDVVETTL-ALDNYRKACDCGRGAVFFSVARGKVAEGIDFDR 612
+ + + + K + E+++ TT L+NY + GRGA+ SV GK++EGI+F
Sbjct: 650 KQTLYETVEKEKQILYESRETELTTDDLLNNYANTINKGRGALLLSVVGGKLSEGINFSD 709
Query: 613 HYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEG----------------DFLTFDA 656
GR V++ G+PF S + A+++Y+ G DF
Sbjct: 710 KLGRGVLIVGLPFPNIRSPVWQAKIKYIEQKAYRNVGSGSEESRRLSAKAAGRDFYENAC 769
Query: 657 LRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHL 701
+R QC+GR IR + DY ++ DKRY + +KLPGWI L
Sbjct: 770 MRAVNQCIGRAIRHRNDYAAIVLIDKRYGKTSIEAKLPGWIKQSL 814
Score = 165 (63.1 bits), Expect = 3.2e-34, Sum P(2) = 3.2e-34
Identities = 77/273 (28%), Positives = 120/273 (43%)
Query: 44 TG-TGKTIALLSLITSYVLS-KPE----NPVKLIYCTRTVHEMEKTLAELKL-------- 89
TG + T+ LL + Y KPE N +K+ YC+RT ++ + +EL+
Sbjct: 165 TGLSSSTLELLERLRKYGSKIKPEEDDENDIKIFYCSRTHSQLMQFASELRRVTMPSTLP 224
Query: 90 --LHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAAC----RKRTASWVR 143
L T +I I L SRKNLC+NSRV A N +++ C + T + +R
Sbjct: 225 ESLRQGLTDEEEQGERIKHISLGSRKNLCINSRVAALGNPTAINERCLELQQPNTPAPLR 284
Query: 144 A--LAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQF 201
L E +T F ++ A A V ++DL GK+ G CPY+ +R
Sbjct: 285 CSYLPTEEDEAKTLSFRDH----ALATVKD-----IEDLGKLGKKLGLCPYYASR----- 330
Query: 202 ANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATR 261
VV +S + D I K VV+ DEAHN+ + SV+V L +
Sbjct: 331 -GVVSHSERSARDALNLSI------KGHVVIIDEAHNLMDAISNIHSVTVTLSQLRTSIF 383
Query: 262 NLSRINQEIE-RFKATDAGRLRAEYNRLVEGLA 293
L+ ++ + R K + + A+ RL+ +A
Sbjct: 384 QLTTYARKFKTRLKGKNRNYI-AQVIRLISSIA 415
Score = 55 (24.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 30/124 (24%), Positives = 52/124 (41%)
Query: 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSL-ITSYVLSKPEN-PV 68
Y PYD Q +M L L+ + E PTG+G + ++ L T + ++ ++ P
Sbjct: 21 YTPYDI----QVRFMQSLYECLEEGKVAIFESPTGSGPRLQIIELSCTDWTRNRDDDEPE 76
Query: 69 KLI-YCTRTVHEM--EKTLA-ELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
++ + R EK + E +L + AA + G R+ + V SR
Sbjct: 77 WMVEFAKREASRAVTEKRIEFESRLARIKREEEQQRAALESSEGSRKRQRVSVVSRDQDT 136
Query: 125 ENRD 128
E+ D
Sbjct: 137 EDDD 140
Score = 37 (18.1 bits), Expect = 3.9e-07, Sum P(2) = 3.9e-07
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 533 DGIVCFFVSYSY 544
DG+ CFF S ++
Sbjct: 828 DGLACFFRSKNH 839
>MGI|MGI:2442836 [details] [associations]
symbol:Brip1 "BRCA1 interacting protein C-terminal helicase
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS00690 PROSITE:PS51193 SMART:SM00491 MGI:MGI:2442836
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006357
GO:GO:0051539 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
CleanEx:MM_BACH1 eggNOG:COG1199 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:AL592465
EMBL:AL592065 EMBL:AL645690 EMBL:BC094252 EMBL:AK051878
EMBL:AK080771 IPI:IPI00319607 RefSeq:NP_840094.1 UniGene:Mm.186143
ProteinModelPortal:Q5SXJ3 SMR:Q5SXJ3 STRING:Q5SXJ3
PhosphoSite:Q5SXJ3 PRIDE:Q5SXJ3 Ensembl:ENSMUST00000044423
GeneID:237911 KEGG:mmu:237911 UCSC:uc007ksf.2 InParanoid:Q5SXJ3
OMA:GVHKISD ChiTaRS:BRIP1 NextBio:383570 Bgee:Q5SXJ3
CleanEx:MM_BRIP1 Genevestigator:Q5SXJ3
GermOnline:ENSMUSG00000034329 Uniprot:Q5SXJ3
Length = 1174
Score = 227 (85.0 bits), Expect = 6.0e-34, Sum P(4) = 6.0e-34
Identities = 73/282 (25%), Positives = 119/282 (42%)
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
L C + ++A + D+ +++V+TSGTLSP+ + L + ++ +
Sbjct: 592 LNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSELGVTFSIQLEANHVISNSQVWV 651
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW 552
+ G + F G LL+ + V GI+CF SY ++++ W
Sbjct: 652 GTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKLRERW 711
Query: 553 NDSGILKEIMQHKLVFIETQDVVETTL--ALDNYRKACDC-GR--GAVFFSVARGKVAEG 607
+G+ + K V E Q +T L Y A G GA+ +V RGKV+EG
Sbjct: 712 IFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVCRGKVSEG 771
Query: 608 IDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEG-----DFLTFDALRQAAQ 662
+DF R VI G+PF + + +Y D G + A R Q
Sbjct: 772 LDFSDDNARAVITVGIPFPNVKDLQVELKRQY-NDHHSKSRGLLPGRQWYEIQAYRALNQ 830
Query: 663 CVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWILSHLR 702
+GR IR K D+G +I D R++ + R S L W+ ++
Sbjct: 831 ALGRCIRHKNDWGALILVDDRFNNNPNRYISGLSKWVRQQIQ 872
Score = 163 (62.4 bits), Expect = 6.0e-34, Sum P(4) = 6.0e-34
Identities = 58/210 (27%), Positives = 101/210 (48%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR
Sbjct: 248 KIYFGTRTHKQIAQITRELR-----KTAYSGVPMTIL----SSRDHSCVHPEVVGNFNRK 298
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP--PGV---YTLQDLRAF 183
C + + + ++C F+ K ++ L G+ + +++L +
Sbjct: 299 E---KCME---------LLDGKHGKSCYFYHGVHKISNQQTLQHLQGMSRAWDIEELVSL 346
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ AR +++ A++V Y YLLD ++ + ++ K VV+ DEAHNI++
Sbjct: 347 GRKLKACPYYTARELIEDADIVFCPYNYLLDSQIRETMDIKL-KGQVVILDEAHNIEDCA 405
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIER 272
E+ S SV L A L S IN I +
Sbjct: 406 RESASYSVTEVQLRFARDELDSLINGNIRK 435
Score = 123 (48.4 bits), Expect = 6.0e-34, Sum P(4) = 6.0e-34
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V ++FP YP Q + M + R L++ HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKIHFPC-RAYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 KPENPV 68
E PV
Sbjct: 67 LSEKPV 72
Score = 40 (19.1 bits), Expect = 6.0e-34, Sum P(4) = 6.0e-34
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 313 DILKEAVPGNIRRAEHFLHVLRRLVQYLRGRLETEN 348
D L + GNIR+ H LR + L LET +
Sbjct: 423 DELDSLINGNIRKKSH--EPLRDVCYNLINWLETNS 456
Score = 38 (18.4 bits), Expect = 3.0e-14, Sum P(4) = 3.0e-14
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 491 CPMVLTRGSDQLPVSTKFDMRSDPGV 516
CP V T+ +SDPG+
Sbjct: 949 CPQVATKSPSVASHGVSRRKKSDPGL 974
>RGD|1306675 [details] [associations]
symbol:Ddx11 "DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000922 "spindle pole" evidence=ISO] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0007062 "sister chromatid cohesion"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] [GO:0030496 "midbody" evidence=ISO]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 RGD:1306675
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0003677 GO:GO:0000790
GO:GO:0004003 GO:GO:0030496 GO:GO:0000922 PANTHER:PTHR11472:SF5
TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199 GO:GO:0007062
OrthoDB:EOG4B5P4M IPI:IPI00765140 Ensembl:ENSRNOT00000016536
UCSC:RGD:1306675 Uniprot:D3ZT96
Length = 882
Score = 299 (110.3 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 79/265 (29%), Positives = 127/265 (47%)
Query: 452 QSVVITSGTLSPI-DLYPRLLNFHPV-VSRSFKMS----LTRDCICPMVLTRGSDQLPVS 505
+++VI GT+ P+ D +LL V SR + S + D I P+++ G +
Sbjct: 588 RALVIAGGTMQPVSDFREQLLACSGVEASRVVEFSCGHVIPPDNILPLIICSGPSNQQLE 647
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ R P + G++L + ++VP G+VCF SY Y+ ++ A W+ +G+L + K
Sbjct: 648 FTYQRRELPQMMEETGRILCNLCNVVPGGMVCFLPSYEYLRQVHAHWDKTGLLARLSVRK 707
Query: 566 LVFIETQDVVETTLALDNYRKA-CDCGR------GAVFFSVARGKVAEGIDFDRHYGRLV 618
+F E + + L Y C GA+ SV GK++EGI+F GR V
Sbjct: 708 KIFQEPKRASQVEQVLTAYSTCIASCSHSEGHLTGALLLSVVGGKMSEGINFSDDLGRCV 767
Query: 619 IMFGVPFQYTLSKILLARLEYLRDTF-----QIKEGDFLTFDALRQAA-QCVGRVIRSKA 672
+M G+P+ S L ++ YL T Q G L + +A Q +GR IR +
Sbjct: 768 VMVGMPYPNIKSPELQEKMAYLDQTIPRTHGQPPPGTVLIENLCMKAINQSIGRAIRHQK 827
Query: 673 DYGMMIFADKRYSRHDKRSKLPGWI 697
D+ ++ D RY+R +KLP WI
Sbjct: 828 DFASIVLLDHRYARPSILAKLPAWI 852
Score = 91 (37.1 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 34/151 (22%), Positives = 70/151 (46%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E+ K+ YC+RT ++ + + E+ Q G +++++G SR++LCVN V +
Sbjct: 196 EHITKIYYCSRTHSQLAQFVREV------QKSPFGKETRLVSLG--SRQSLCVNEDVKSL 247
Query: 125 ENRDSVDAAC---RKRTASWVRALAAENPNIE------TCEFFENYEKAASAAVLPPGVY 175
+ ++ C ++R +R + + P +C F+ + + + V
Sbjct: 248 GSVHLMNDRCVDMQRRKHKKMR-IGEDKPKRRRQKMQASCPFYNHEQMELLRDEILLEVK 306
Query: 176 TLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
++ L A GK+ CPY+ +R + A V+
Sbjct: 307 DMEQLVALGKEAQACPYYGSRFAIPAAQQVL 337
Score = 86 (35.3 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 10 VYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
++FP+ YP Q +M EL + L+A + E PTGTGK+++L+
Sbjct: 11 IHFPFPFPPYPIQKDFMAELYKVLEAGKIGIFESPTGTGKSLSLI 55
Score = 39 (18.8 bits), Expect = 0.00090, Sum P(3) = 0.00090
Identities = 6/15 (40%), Positives = 13/15 (86%)
Query: 239 IDNVCIEALSVSVRR 253
I+N+C++A++ S+ R
Sbjct: 807 IENLCMKAINQSIGR 821
>UNIPROTKB|F1MWN6 [details] [associations]
symbol:RTEL1 "Regulator of telomere elongation helicase 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 IPI:IPI00905335 EMBL:DAAA02036222
Ensembl:ENSBTAT00000052120 OMA:THEKEDE Uniprot:F1MWN6
Length = 564
Score = 222 (83.2 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 66/249 (26%), Positives = 126/249 (50%)
Query: 429 PDPVLQLSCHDASLAVKPVFDR-FQSVVITSGTLSPIDLYPRLLNF-HPVVSRSFKMSLT 486
P VL C +++ + + +++++TSGTL+P+ + + PV + + +
Sbjct: 316 PGKVLSYWCFSPGHSMRELVRQGVRTLILTSGTLAPMASFSLEMQIPFPVCLENPHV-IN 374
Query: 487 RDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
+ I V+ +G D +S+ FD R + GK+L + +VP G++ FF SY M+
Sbjct: 375 QHQIWVGVIPKGPDGAQLSSAFDRRFSDECLSSLGKVLSNISRVVPHGLLVFFPSYPVME 434
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNY--RKACDCGRGAVFFSVARGKV 604
+ + W +++ K +F+E + + ++ + R A GA+F +V RGK
Sbjct: 435 KSLEFWRARDFTRKLEVRKPLFVEPRSKGGFSEVMEAFYARVAAPESSGAIFLAVCRGKA 494
Query: 605 AEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEG---DFLT-FDALRQ- 659
+EG+DF GR VI+ G+P+ + +L ++++L D + + G FL+ D RQ
Sbjct: 495 SEGLDFADVNGRGVIVTGLPYPPRMDPRVLLKMQFL-DEMKAQSGAGGQFLSGHDWYRQQ 553
Query: 660 AAQCVGRVI 668
A++ V + I
Sbjct: 554 ASRAVNQAI 562
Score = 205 (77.2 bits), Expect = 2.1e-31, Sum P(2) = 2.1e-31
Identities = 54/179 (30%), Positives = 87/179 (48%)
Query: 109 LSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAA 168
L SR+ LC++ V E+ CR++ AS +C F+ N E+ +
Sbjct: 6 LGSREQLCIHPEVKKQESNHMQVHLCRRKVAS------------RSCHFYNNVEEKSLEQ 53
Query: 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKE 228
L + ++DL G + CPY+L+R++ Q A+++ Y YLLD K ++ K
Sbjct: 54 ELATPILDIEDLVRSGTKHKLCPYYLSRNLKQQADIIFMPYNYLLDAKSRRAHGIDL-KG 112
Query: 229 SVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEIE-RFKATDAGRLRAEYN 286
+VV+FDEAHN++ +C EA S + T L I+Q +E R K L E++
Sbjct: 113 TVVIFDEAHNVEKMCEEAASFDL---TPHDVASGLDVIDQVLEERTKVAQQAELHPEFS 168
>ZFIN|ZDB-GENE-081107-11 [details] [associations]
symbol:brip1 "BRCA1 interacting protein C-terminal
helicase 1" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020
ZFIN:ZDB-GENE-081107-11 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199
TIGRFAMs:TIGR00604 CTD:83990 HOGENOM:HOG000068083
HOVERGEN:HBG081519 KO:K15362 OrthoDB:EOG4J6RQ8 EMBL:EF088194
IPI:IPI00877443 RefSeq:NP_001103766.1 UniGene:Dr.85128
ProteinModelPortal:A8QLH7 STRING:A8QLH7 GeneID:794038
KEGG:dre:794038 NextBio:20931680 ArrayExpress:A8QLH7 Uniprot:A8QLH7
Length = 1217
Score = 213 (80.0 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 65/285 (22%), Positives = 124/285 (43%)
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
L C + ++A + +S+V+TSGTLSP+ + L + + + +
Sbjct: 618 LSFWCLNPAVAFSDLSSTVRSIVLTSGTLSPMGSFSSELGIKFSIQLEANHVINKSQVWV 677
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW 552
+ G + F G LL+++ V G++CF SY +D++ W
Sbjct: 678 GTIGAGPQGRKLCATFQHAETFAFQDEVGALLLKVCHTVSRGVLCFLPSYKMLDKLRDRW 737
Query: 553 NDSGILKEIMQHKLVFIETQ--------DVVETTL-ALDNYRKACDCGRGAVFFSVARGK 603
++G+ ++ + K V E + ++++T A+ + GA+ +V RGK
Sbjct: 738 TNTGLWDKLEECKTVITEPRGGGKGDFDELLQTYYEAIRGTAAKGEKRDGALLVAVCRGK 797
Query: 604 VAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEY----LRDTFQIKEGDFLTFDALRQ 659
V+EG+DF R V+ G+PF + +++Y + + G + A R
Sbjct: 798 VSEGLDFTDDNARAVVTIGIPFPNIKDLQVELKMKYNDKHAKSRGLLPGGRWYEIQAYRA 857
Query: 660 AAQCVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWILSHLR 702
Q +GR IR + D+G +I D R+ + + + L W+ +R
Sbjct: 858 LNQALGRCIRHRNDWGALILVDDRFRTNPNKYITGLSKWVRQLVR 902
Score = 157 (60.3 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 59/194 (30%), Positives = 94/194 (48%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + ELK Y T P + I LSSR + CV+ V+ NR+
Sbjct: 273 KIFFGTRTHKQITQIARELKRTL-YSTV---P----MTI-LSSRDHTCVHPEVVPHANRN 323
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP--PGVYTLQDL----RA 182
C++ L A+N +C ++ N K + L G++ D+ R
Sbjct: 324 E---RCKE-------FLEAKNGR--SCRYYHNVHKMRDQSTLQWVHGLHQAWDIEELVRL 371
Query: 183 FGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNV 242
GK + C Y+ AR ++Q A +V Y YLLDP + + + KE +VV DEAHNI++
Sbjct: 372 GGKLRS-CAYYAARELMQEACIVFCPYNYLLDPLIRESMEINL-KEQIVVLDEAHNIEDC 429
Query: 243 CIEALSVSVRRQTL 256
E+ S ++ + L
Sbjct: 430 ARESASFTLNQAQL 443
Score = 103 (41.3 bits), Expect = 4.3e-30, Sum P(3) = 4.3e-30
Identities = 22/51 (43%), Positives = 31/51 (60%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V + FP YP Q + M + R L+ HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKINFPC-KAYPSQLAMMNSIIRGLNNGQHCLLESPTGSGKSLALL 57
Score = 38 (18.4 bits), Expect = 8.2e-12, Sum P(3) = 8.2e-12
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 502 LPVSTKFDMRSDPGVARNYGKLLVEMVSIVPD 533
+PV+ K + DP + +E + ++P+
Sbjct: 1046 IPVTPKHQINGDPDQNETSFEPQLEQIFVIPN 1077
>WB|WBGene00010839 [details] [associations]
symbol:chl-1 species:6239 "Caenorhabditis elegans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0003677 GO:GO:0004003 eggNOG:COG1199
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 HOGENOM:HOG000241266
OMA:NLGRCVV GeneTree:ENSGT00530000063199 EMBL:Z49128
RefSeq:NP_499295.2 ProteinModelPortal:Q21489 SMR:Q21489
STRING:Q21489 PaxDb:Q21489 EnsemblMetazoa:M03C11.2 GeneID:176457
KEGG:cel:CELE_M03C11.2 UCSC:M03C11.2 CTD:176457 WormBase:M03C11.2
InParanoid:Q21489 NextBio:892664 Uniprot:Q21489
Length = 830
Score = 275 (101.9 bits), Expect = 6.0e-30, Sum P(2) = 6.0e-30
Identities = 72/253 (28%), Positives = 123/253 (48%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHPVVSRSFKM----SLTRDC-ICPMVLTRGSDQLPVST 506
++ ++ GT+ P L L+ + + S + + D + + + R D P
Sbjct: 555 RATILVGGTMEPAQLLVETLSRGSIGADSIRRFSCCHVIDDSQLLAVTVERTVDGKPFQL 614
Query: 507 KFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKL 566
+ R R+ + ++ +P+G+V F SY ++ + GILK I + K
Sbjct: 615 TYQTRGADTTLRSLATSIQALIPHIPNGVVIFVPSYDFLFNFQKKMKEFGILKRIEEKKA 674
Query: 567 VFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626
VF E++ T+ D + +A +GA+ F+V GK++EGI+F GR VI+ G+P+
Sbjct: 675 VFTESRQ--PTSDVWDRFSRAAKTSKGAILFAVVGGKMSEGINFCDELGRAVIVIGLPYP 732
Query: 627 YTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAA--QCVGRVIRSKADYGMMIFADKRY 684
S L R+++L DT Q+ G L +++L A Q +GR IR + DY + D RY
Sbjct: 733 NKTSVELRERMKFL-DT-QMPNGGNLLYESLCMHAVNQAIGRAIRHRRDYAAVYLFDDRY 790
Query: 685 SRHDKRSKLPGWI 697
++ R KL WI
Sbjct: 791 AKESTRRKLSTWI 803
Score = 141 (54.7 bits), Expect = 6.0e-30, Sum P(2) = 6.0e-30
Identities = 59/217 (27%), Positives = 92/217 (42%)
Query: 63 KPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
KP +K+ Y +RT ++E+ LAE +Q R + +SR LCVN V
Sbjct: 179 KPLKCLKIFYASRTHSQLEQ-LAEELAKTRFQPR---------IVTCASRGTLCVNEEVK 228
Query: 123 AAENRDSVDAAC---RKRTASW---VRALA-AENPNIETC----EFFENYE-KAASAAVL 170
+ ++ C RK S V+ L +TC EF+ + + + VL
Sbjct: 229 KLKLNHLINEKCMELRKNGMSEKEKVQKLEKGTTKKTKTCATSCEFYNSTQIEDVVNGVL 288
Query: 171 PPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESV 230
+ + ++ GK CPYF R V +V+ YQ LL E+ K++V
Sbjct: 289 SNKLKSTLEVSKQGKLSNGCPYFATRKSVPQCQLVLLPYQVLLHDGTRKAWGIEL-KDNV 347
Query: 231 VVFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRIN 267
+V DEAHN+ N S + ++L A R + N
Sbjct: 348 IVLDEAHNVLNTISSLYSAEISTKSLTLALRLIREYN 384
Score = 74 (31.1 bits), Expect = 6.1e-23, Sum P(2) = 6.1e-23
Identities = 36/135 (26%), Positives = 63/135 (46%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI 71
FP+ Y Q + M E+++ ++ + + E PTGTGK++++L ++ L E +
Sbjct: 6 FPFQP-YDIQLNLMREIRQCIEQRKIGIFESPTGTGKSLSVLCSTMTW-LEAEELRISTD 63
Query: 72 YCTRT--VHEMEKTLAELKLLHNYQT--RHLGPAAKI---LAIGLSSRKNLCVNSRVLAA 124
TR VH ++ N++T R A + + + SR+ L SR+ A
Sbjct: 64 LSTRLGEVHTKITECDKITTADNWETAVREKMRAQDVETEILEQIQSRERL--QSRIDQA 121
Query: 125 ENRDSVDAACRKRTA 139
R V+ + RKR A
Sbjct: 122 R-RGMVEVS-RKRKA 134
>UNIPROTKB|B4E0F6 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
GO:GO:0005524 GO:GO:0003677 GO:GO:0004003 EMBL:L47234
UniGene:Hs.487294 HGNC:HGNC:3434 ChiTaRS:ERCC2 EMBL:AK303358
IPI:IPI01014366 SMR:B4E0F6 STRING:B4E0F6 Ensembl:ENST00000221481
Ensembl:ENST00000591309 Uniprot:B4E0F6
Length = 127
Score = 339 (124.4 bits), Expect = 7.0e-30, P = 7.0e-30
Identities = 66/124 (53%), Positives = 87/124 (70%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYM ELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSR 120
+ P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 121 VLAA 124
+A
Sbjct: 121 TTSA 124
>WB|WBGene00001049 [details] [associations]
symbol:dog-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0000723 "telomere maintenance"
evidence=IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI;IMP] [GO:0090329 "regulation of DNA-dependent DNA
replication" evidence=IGI;IMP] InterPro:IPR002464
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690
PROSITE:PS51193 SMART:SM00488 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0000003 GO:GO:0004003 GO:GO:0000723
GO:GO:0006289 GO:GO:0043570 eggNOG:COG1199
GeneTree:ENSGT00530000063199 GO:GO:0090329 KO:K15362 EMBL:Z81526
PIR:T21711 RefSeq:NP_493618.1 ProteinModelPortal:O62217 SMR:O62217
STRING:O62217 PaxDb:O62217 EnsemblMetazoa:F33H2.1.1
EnsemblMetazoa:F33H2.1.2 GeneID:173370 KEGG:cel:CELE_F33H2.1
UCSC:F33H2.1 CTD:173370 WormBase:F33H2.1 HOGENOM:HOG000021716
InParanoid:O62217 OMA:EKELDDS NextBio:879367 Uniprot:O62217
Length = 983
Score = 249 (92.7 bits), Expect = 7.1e-30, Sum P(3) = 7.1e-30
Identities = 78/267 (29%), Positives = 123/267 (46%)
Query: 433 LQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICP 492
+ L C +L+ F+ +S+V+ SGTL P+D L + +D I
Sbjct: 662 ISLWCMSPALSFFDAFNETRSIVLASGTLCPMDTLKTELGMEFKQQVEGDQVINKDNIFA 721
Query: 493 MVLTRGSDQLPVSTKFDMRSDPGVAR--NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIA 550
VL G + + SDP + G ++ + S VP GI+CF SY +D++
Sbjct: 722 AVLPIGPFGNRIQCTYRNTSDPESSFYCELGAIIKYVCSNVPAGILCFLPSYRVLDQLKQ 781
Query: 551 TWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKAC-DCGR------GAVFFSVARGK 603
+ +++I K+V E + E T +D + A D R G++ F+V RGK
Sbjct: 782 CMIRNSTMRQIEMKKVVLYEPRRSSELTSVMDQFDAAIFDPSRFGANINGSLMFAVFRGK 841
Query: 604 VAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIK---EGD-FLTFDALRQ 659
V+EGIDF R+VI G+P+ + + A+ Y + K GD + T A R
Sbjct: 842 VSEGIDFADDRARVVISVGIPYPNAMDDQVNAKKLYNDQNSKEKGILTGDEWYTTQAYRA 901
Query: 660 AAQCVGRVIRSKADYGMMIFADKRYSR 686
Q +GR +R K D+G M+ D+R R
Sbjct: 902 LNQALGRCLRHKNDWGAMLMIDERLER 928
Score = 150 (57.9 bits), Expect = 7.1e-30, Sum P(3) = 7.1e-30
Identities = 57/208 (27%), Positives = 98/208 (47%)
Query: 68 VKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIG-LSSRKNLCVNSRVLAAEN 126
V++ Y TRT ++ + + E L P AKIL L+SR+ C+N AA
Sbjct: 238 VRIYYGTRTHKQIAQVVKEFSRL---------PYAKILKHTILASREQSCINP---AARK 285
Query: 127 RDSVDAACRK-RTASWVRAL--AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAF 183
+ C++ +A + +A P E ++ + V + + + A
Sbjct: 286 HADISQYCKEVNSAHSIGCSFKSAMKPRFEKALPLRDHLERNGTVVFD--MEKIVETLAI 343
Query: 184 GKQQGWCPYFLA-RHMVQFANVVVYSYQYLLDPKVAGIISKEMQ-KESVVVFDEAHNIDN 241
Q CPYF R + Q A+++ + YL+DP + S ++Q + S+V+ DEAHNI++
Sbjct: 344 SYPQ-LCPYFSTNRILTQDADIIFCPFSYLVDPLIRN--SSDVQIRNSIVILDEAHNIED 400
Query: 242 VCIEALSVSVRRQTLEGATRNLSRINQE 269
C EA S S + L+ + +L RI ++
Sbjct: 401 TCREAASFSFTEKELDDSILSL-RIKRK 427
Score = 66 (28.3 bits), Expect = 7.1e-30, Sum P(3) = 7.1e-30
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSL----ITSYVLSKPENPVK 69
++Y Q ++ + AL + L E PTG+GKT+ALL+ + Y+ K E+ K
Sbjct: 89 SLYSTQKLMIVRILTALKNSQNVLGESPTGSGKTMALLASTCAWLKQYIDEKRESKEK 146
Score = 37 (18.1 bits), Expect = 3.2e-18, Sum P(3) = 3.2e-18
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 79 EMEKTLAELKLLH 91
E++KT E KLLH
Sbjct: 432 ELDKTGIEEKLLH 444
>UNIPROTKB|E1BNG9 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
GeneTree:ENSGT00530000063199 EMBL:DAAA02048371 IPI:IPI00923893
Ensembl:ENSBTAT00000048969 Uniprot:E1BNG9
Length = 1098
Score = 353 (129.3 bits), Expect = 1.3e-28, P = 1.3e-28
Identities = 163/656 (24%), Positives = 270/656 (41%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 181 KIYFGTRTHKQIAQITRELQ-----RTAYSGVPMTIL----SSRDHTCVHPEVMGNFNRN 231
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP--GVYT---LQDLRAF 183
C + + N ++C F+ K + L G++ +++L +
Sbjct: 232 E---KCME---------LLDGKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSL 279
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 280 GRKLKACPYYTARELMQNADIIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCA 338
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
E+ S SV L A L S IN I + D LRA L+ L +
Sbjct: 339 RESASYSVTEVQLRFARDELDSMINYNIRK---KDHEPLRAVCCSLINWLEASSEHLVER 395
Query: 303 AWLSNPAL--PSDILKEAVPGNIRRAE------HFLHVLRR--LVQYLRGRLETENVEKE 352
+ S+ + S++L I A HF VL+R V + G+ E +
Sbjct: 396 NYESSCKVWSGSEMLLNLHKMGITTATFPILQGHFSAVLQREEKVPSIHGKEEAREI--- 452
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
PV I+A I K L + L D D + IQ + T
Sbjct: 453 -PV-----ISASTQIMLKGLFMVLDYL--FRQNSRFAD-DYKVAIQQTYSWINQSDTTDH 503
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
G I+ + VL C + ++A + + ++V+TSGTLSP+ + L
Sbjct: 504 GLLILSKNKKRLRQKAAVRVLNFWCLNPAVAFSDINGKVWAIVLTSGTLSPMKSFSSELG 563
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
+ + + + G + F G LL+ + +
Sbjct: 564 VTFTIQLEANHVINNSQVWVGTIGSGPKGRSLCATFQHTETFEFQDEVGALLLSVCQTIS 623
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--DVVETTLALDNYRKACDC 590
GI+CF SY ++++ W +G+ + K V +E Q + ++ L Y A
Sbjct: 624 QGILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGGEKIDFDELLQMYYDAIKY 683
Query: 591 -GR--GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIK 647
G GA+ +V RGKV+EG+DF R V+ G+PF + + +Y +++
Sbjct: 684 KGEKDGALLVAVCRGKVSEGLDFSDDNARAVVTIGIPFPNVKDLQVELKRQYNDQHSKLR 743
Query: 648 ---EG-DFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWI 697
G + A R Q +GR IR K D+G +I D R+ + R S L W+
Sbjct: 744 GLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRYISGLSKWV 799
>UNIPROTKB|F1MMS0 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006554 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006357
GO:GO:0004003 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
OMA:GVHKISD EMBL:DAAA02048371 IPI:IPI00923893
Ensembl:ENSBTAT00000061499 Uniprot:F1MMS0
Length = 1164
Score = 353 (129.3 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 163/656 (24%), Positives = 270/656 (41%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 181 KIYFGTRTHKQIAQITRELQ-----RTAYSGVPMTIL----SSRDHTCVHPEVMGNFNRN 231
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP--GVYT---LQDLRAF 183
C + + N ++C F+ K + L G++ +++L +
Sbjct: 232 E---KCME---------LLDGKNGKSCYFYHGVHKMSDQHTLQTFQGMHKAWDIEELVSL 279
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
G++ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 280 GRKLKACPYYTARELMQNADIIFCPYNYLLDAQIRETMDINL-KEQVVILDEAHNIEDCA 338
Query: 244 IEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIAD 302
E+ S SV L A L S IN I + D LRA L+ L +
Sbjct: 339 RESASYSVTEVQLRFARDELDSMINYNIRK---KDHEPLRAVCCSLINWLEASSEHLVER 395
Query: 303 AWLSNPAL--PSDILKEAVPGNIRRAE------HFLHVLRR--LVQYLRGRLETENVEKE 352
+ S+ + S++L I A HF VL+R V + G+ E +
Sbjct: 396 NYESSCKVWSGSEMLLNLHKMGITTATFPILQGHFSAVLQREEKVPSIHGKEEAREI--- 452
Query: 353 GPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTR 412
PV I+A I K L + L D D + IQ + T
Sbjct: 453 -PV-----ISASTQIMLKGLFMVLDYL--FRQNSRFAD-DYKVAIQQTYSWINQSDTTDH 503
Query: 413 GFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLN 472
G I+ + VL C + ++A + + ++V+TSGTLSP+ + L
Sbjct: 504 GLLILSKNKKRLRQKAAVRVLNFWCLNPAVAFSDINGKVWAIVLTSGTLSPMKSFSSELG 563
Query: 473 FHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVP 532
+ + + + G + F G LL+ + +
Sbjct: 564 VTFTIQLEANHVINNSQVWVGTIGSGPKGRSLCATFQHTETFEFQDEVGALLLSVCQTIS 623
Query: 533 DGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--DVVETTLALDNYRKACDC 590
GI+CF SY ++++ W +G+ + K V +E Q + ++ L Y A
Sbjct: 624 QGILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGGEKIDFDELLQMYYDAIKY 683
Query: 591 -GR--GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIK 647
G GA+ +V RGKV+EG+DF R V+ G+PF + + +Y +++
Sbjct: 684 KGEKDGALLVAVCRGKVSEGLDFSDDNARAVVTIGIPFPNVKDLQVELKRQYNDQHSKLR 743
Query: 648 ---EG-DFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWI 697
G + A R Q +GR IR K D+G +I D R+ + R S L W+
Sbjct: 744 GLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRSNPSRYISGLSKWV 799
>UNIPROTKB|E1BL06 [details] [associations]
symbol:E1BL06 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030496 "midbody" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000922 "spindle pole"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 InterPro:IPR027076 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0003677 GO:GO:0000790 GO:GO:0004003 GO:GO:0030496
GO:GO:0000922 InterPro:IPR014001 SMART:SM00487
PANTHER:PTHR11472:SF5 TIGRFAMs:TIGR00604 OMA:NLGRCVV
GeneTree:ENSGT00530000063199 GO:GO:0007062 EMBL:DAAA02014574
EMBL:DAAA02014575 EMBL:DAAA02014576 EMBL:DAAA02014577
IPI:IPI00707607 Ensembl:ENSBTAT00000009329 Uniprot:E1BL06
Length = 913
Score = 202 (76.2 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 53/178 (29%), Positives = 83/178 (46%)
Query: 452 QSVVITSGTLSPI-DLYPRLL-----NFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVS 505
++VVI GT+ P+ D +LL VV S + D I P+++ G +
Sbjct: 613 RAVVIAGGTMQPVSDFREQLLAGAGVEAERVVEFSCGHVIPPDHILPLIICSGPSNQMLD 672
Query: 506 TKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK 565
+ R P + G++L + ++VP G+VCFF SY Y ++ W SG+L + K
Sbjct: 673 FTYQKRGLPQMMDETGRILCNLCNVVPGGVVCFFPSYEYQHQVCTHWEKSGLLARLTIRK 732
Query: 566 LVFIETQDVVETTLALDNYRKACD-CGR------GAVFFSVARGKVAEGIDFDRHYGR 616
+F E + L Y + CG+ GA+ SV GK++EGI+F GR
Sbjct: 733 KIFQEPRKANRVEQVLLEYSRCIKHCGQAQGTETGALLLSVVGGKMSEGINFSDDLGR 790
Score = 168 (64.2 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 73/249 (29%), Positives = 110/249 (44%)
Query: 65 ENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAA 124
E+ K+ YC+RT H LA+ +H Q G +++++G SR+NLCVN V
Sbjct: 221 EHVTKIYYCSRT-HSQ---LAQF--VHEVQKSPFGQDTRLVSLG--SRQNLCVNGDVRKG 272
Query: 125 E----NRDSVDAACRKRTASWV-------RALAAENPNIETCEFFENYEKAASAA--VLP 171
N V+ K + R + P TC F+ +YE+ VL
Sbjct: 273 SVQLINDRCVEMQRSKHERKSITEEEEPTRRRRRQEPRA-TCPFY-SYERLQLLRDEVLV 330
Query: 172 PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVV 231
GV ++ L A G++ CPY+ R + A +VV YQ LL +Q + VV
Sbjct: 331 -GVKDVEQLVALGEEAQACPYYGGRFAIPAAQLVVLPYQMLLHAPTRQAAGIRLQGQ-VV 388
Query: 232 VFDEAHNIDNVCIEALSVSVRRQTLEGATRNLSRINQEI-ERFKATDAGRLRAEYNRLVE 290
V DEAHN+ + SV VR L A L + + +R KA + ++ L +
Sbjct: 389 VIDEAHNLIDTITNIHSVEVRGSQLCQAHSQLLQYTERYGKRLKAKNLMYIKQLLYLLEK 448
Query: 291 GLA-LRGNL 298
+A L GN+
Sbjct: 449 FVAVLGGNI 457
Score = 107 (42.7 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
Identities = 43/157 (27%), Positives = 72/157 (45%)
Query: 557 ILKEIMQH--KLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFD--- 611
I K+I Q K +E Q ++E + + + +A GA+ SV GK++EGI+F
Sbjct: 730 IRKKIFQEPRKANRVE-QVLLEYSRCIKHCGQAQGTETGALLLSVVGGKMSEGINFSDDL 788
Query: 612 ---RHYGRLVIMFGVPFQYTLSKILLARLEYL-------RDTFQIKEGDFLTFDALRQAA 661
+ GR ++ GV + A + R Q + G L + +A
Sbjct: 789 GRPQRDGRASVLLGVFVPSPVVSAAGAHEAHWSRPRASPRGPGQARPGKVLVENLCMKAV 848
Query: 662 -QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWI 697
Q +GR IR + D+ ++ D+RY+ ++KLP WI
Sbjct: 849 NQSIGRAIRHQKDFASIVLLDQRYASPAIQAKLPAWI 885
Score = 73 (30.8 bits), Expect = 2.0e-27, Sum P(3) = 2.0e-27
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 10 VYFPYD-NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
++FP+ Y Q +M L + L+A + E PTGTGK+++L+
Sbjct: 11 IHFPFPFTPYAIQKDFMAALYQVLEAGKIGIFESPTGTGKSLSLI 55
>RGD|1307659 [details] [associations]
symbol:Brip1 "BRCA1 interacting protein C-terminal helicase 1"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IDA] [GO:0031965 "nuclear membrane" evidence=ISO]
[GO:0071295 "cellular response to vitamin" evidence=IEP]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 RGD:1307659
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0008285 GO:GO:0003677 GO:GO:0004003 TIGRFAMs:TIGR00604
IPI:IPI00781914 Ensembl:ENSRNOT00000055817 ArrayExpress:D4AD12
GO:GO:0071295 Uniprot:D4AD12
Length = 818
Score = 228 (85.3 bits), Expect = 3.1e-26, Sum P(4) = 3.1e-26
Identities = 73/282 (25%), Positives = 122/282 (43%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
VL C + ++A + D+ +++V+TSGTLSP+ + L + ++ +
Sbjct: 511 VLNFWCLNPAVAFSDINDKVRTIVLTSGTLSPLKSFSSELGVTFNIQLEANHVISNSQVW 570
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIAT 551
+ G + F G LL+ + V GI+CF SY ++++
Sbjct: 571 VGTVGSGPKGRNLCATFQHTETFEFQDEVGMLLLSVCQTVSQGILCFLPSYKLLEKLRER 630
Query: 552 WNDSGILKEIMQHKLVFIETQDVVETTL--ALDNYRKACDC-GR--GAVFFSVARGKVAE 606
W +G+ + K V E Q +T L Y A G GA+ +V RGKV+E
Sbjct: 631 WIFTGLWHSLESVKTVIAEPQGGEKTDFDELLQVYYDAIKFKGEKDGALLIAVCRGKVSE 690
Query: 607 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIK---EG-DFLTFDALRQAAQ 662
G+DF R VI G+PF + + +Y +++ G + A R Q
Sbjct: 691 GLDFSDDNARAVITIGIPFPNVKDLQVELKRQYNDHHSKLRGLLPGRQWYEIQAYRALNQ 750
Query: 663 CVGRVIRSKADYGMMIFADKRYSRHDKR--SKLPGWILSHLR 702
+GR IR K D+G +I D R++ + R S L W+ ++
Sbjct: 751 ALGRCIRHKNDWGALILVDDRFNNNPDRYISGLSKWVRQQIQ 792
Score = 116 (45.9 bits), Expect = 3.1e-26, Sum P(4) = 3.1e-26
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V ++FP YP Q + M + R L++ HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKIHFPC-RAYPAQLAMMNSIVRGLNSSQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 KPENPV 68
PV
Sbjct: 67 LTGKPV 72
Score = 78 (32.5 bits), Expect = 3.1e-26, Sum P(4) = 3.1e-26
Identities = 21/47 (44%), Positives = 24/47 (51%)
Query: 227 KESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL-SRINQEIER 272
KE VV+ DEAHNI+ E S SV L A L S IN I +
Sbjct: 309 KEQVVILDEAHNIEECARETASYSVTEVQLRFARDELDSLINSNIRK 355
Score = 47 (21.6 bits), Expect = 3.1e-26, Sum P(4) = 3.1e-26
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 242 KIYFGTRTHKQIAQITRELR-----KTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRN 292
Score = 42 (19.8 bits), Expect = 1.4e-22, Sum P(4) = 1.4e-22
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 319 VPGNIRRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYER 378
V GN R E + +L ++ + + +++ + A TA + + LRF +
Sbjct: 285 VVGNFNRNEKCMELLDGKHMDIKLKEQVVILDEAHNIEECARETASYSVTEVQLRFARDE 344
Query: 379 LHSLM 383
L SL+
Sbjct: 345 LDSLI 349
>TAIR|locus:2016209 [details] [associations]
symbol:AT1G79950 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009616 "virus
induced gene silencing" evidence=RCA] [GO:0009855 "determination of
bilateral symmetry" evidence=RCA] [GO:0010014 "meristem initiation"
evidence=RCA] [GO:0010073 "meristem maintenance" evidence=RCA]
[GO:0010267 "production of ta-siRNAs involved in RNA interference"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR003822 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 SMART:SM00491 INTERPRO:IPR013020 EMBL:CP002684
GO:GO:0005739 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
TIGRFAMs:TIGR00604 Gene3D:1.20.1160.11 SUPFAM:SSF47762 KO:K11136
OMA:PFPPLKD IPI:IPI00530732 RefSeq:NP_178113.3 UniGene:At.34013
ProteinModelPortal:F4HQE2 SMR:F4HQE2 PRIDE:F4HQE2
EnsemblPlants:AT1G79950.1 GeneID:844335 KEGG:ath:AT1G79950
ArrayExpress:F4HQE2 Uniprot:F4HQE2
Length = 1040
Score = 211 (79.3 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 60/205 (29%), Positives = 103/205 (50%)
Query: 453 SVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRS 512
S+++TSGTLSP+D + L + ++ + + V++ G +++ + R
Sbjct: 484 SIILTSGTLSPMDSLAQELKLDFPIRLENPHVISSNQLWAGVVSTGPSGYVLNSSYRNRD 543
Query: 513 DPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW------NDSGILKEIMQHKL 566
P + G +V +VP+G++ FF SY MD I W N + + I + K
Sbjct: 544 VPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFWKNGCYRNSMTVWERICKLKK 603
Query: 567 VFIETQDVVETTLALDNY-RKACD-CGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVP 624
IE +D A+ ++ K D G VFF+V RGKV+EG+DF GR V++ G+P
Sbjct: 604 PVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVCRGKVSEGLDFADGAGRAVVITGLP 663
Query: 625 F-QYTLSKILLARLEYLRDTFQIKE 648
+ + T ++ L R E+L + Q+ +
Sbjct: 664 YARVTDPRVKLKR-EFLDEQSQLAD 687
Score = 190 (71.9 bits), Expect = 3.5e-23, Sum P(2) = 3.5e-23
Identities = 58/187 (31%), Positives = 97/187 (51%)
Query: 553 NDSGILKEIMQHKLVFIETQDVVETTLALDNY-RKACD-CGRGAVFFSVARGKVAEGIDF 610
N + + I + K IE +D A+ ++ K D G VFF+V RGKV+EG+DF
Sbjct: 590 NSMTVWERICKLKKPVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVCRGKVSEGLDF 649
Query: 611 DRHYGRLVIMFGVPF-QYTLSKILLARLEYLRDTFQIKE----------GD-FLTFDALR 658
GR V++ G+P+ + T ++ L R E+L + Q+ + G + + +A R
Sbjct: 650 ADGAGRAVVITGLPYARVTDPRVKLKR-EFLDEQSQLADVKLPRSTLLSGSMWYSQEAAR 708
Query: 659 QAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR--DAHLNLSTDMALHI 716
Q +GRVIR + DYG +IF D R+ + ++SK+ WI +++ + + +D+A
Sbjct: 709 AVNQAIGRVIRHRHDYGAIIFCDDRFEQPSQQSKISLWIRPNVKCYSRYGEVISDLARFF 768
Query: 717 AREVGNF 723
E NF
Sbjct: 769 RTERSNF 775
Score = 168 (64.2 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 67/270 (24%), Positives = 116/270 (42%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + + V FP++ Y Q YM + +L K H LLE PTGTGKT+ LL ++ S
Sbjct: 49 YSIRGINVEFPFE-AYQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAWRKS 107
Query: 63 ------KPENPVKLIYCTRTVHEMEK----------TLAELKLLHNYQTRHLGPAAKILA 106
+ + I + + + + T+ H+ Q R + K +
Sbjct: 108 LGSFSTRKDRKNSAIPWSDSDEPLSQSGGGGGGAFPTIVYASRTHS-QLRQVIKELKRSS 166
Query: 107 -----IGLSSRKNLCVNSRVLAAENRDSVDAA---CRKRTASWVRALAAENPNIETCEFF 158
+ L SR+ LCVN V + + +A C+KR R N ++
Sbjct: 167 YRPKMVVLGSREQLCVNEEVNSLRGKALTNACQYLCKKRGK---RQCNHFN---RLPDYL 220
Query: 159 ENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVA 218
++ V ++DL GK G CPY++ R + + +++ Y YL+
Sbjct: 221 KHNPHIGDEPV------DIEDLVNIGKDSGPCPYYITRELHKDVDIIFAPYNYLISNGYR 274
Query: 219 GIISKEMQKESVVVFDEAHNIDNVCIEALS 248
+ K SV++FDEAHN++++C ++ S
Sbjct: 275 KFL-KVNWTNSVLIFDEAHNLESLCADSAS 303
Score = 41 (19.5 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 400 ICDFATLVGTYTRGFSIIIEPFDERMPH 427
+C F L+ RGF ++ D +MP+
Sbjct: 22 VC-FRLLLRLLRRGFVVLSAESDPKMPN 48
>UNIPROTKB|I3LAE6 [details] [associations]
symbol:I3LAE6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006289 "nucleotide-excision repair" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001945 InterPro:IPR010643 Pfam:PF06777 PRINTS:PR00852
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004003
GO:GO:0006289 GeneTree:ENSGT00550000075092
Ensembl:ENSSSCT00000025749 Uniprot:I3LAE6
Length = 111
Score = 282 (104.3 bits), Expect = 9.9e-24, P = 9.9e-24
Identities = 56/93 (60%), Positives = 71/93 (76%)
Query: 375 CYERLHSLMLTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQ 434
C ERL SL+ TLEI D +F + + +FATLV TY +GF+IIIEPFD+R P I +PVL
Sbjct: 14 CAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPVLH 73
Query: 435 LSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
SC DASLA+KPVF+RFQSV+ITSG + P+ L+
Sbjct: 74 FSCMDASLAIKPVFERFQSVIITSG-VRPLALH 105
>UNIPROTKB|I3LHB7 [details] [associations]
symbol:ERCC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR006555 Pfam:PF13307
GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
GeneTree:ENSGT00550000075092 Ensembl:ENSSSCT00000032501 OMA:GGEGREM
Uniprot:I3LHB7
Length = 138
Score = 282 (104.3 bits), Expect = 9.9e-24, P = 9.9e-24
Identities = 56/121 (46%), Positives = 80/121 (66%)
Query: 488 DCICPM-VLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMD 546
D C + ++ RG+DQ+ +S+KF+ R D V RNYG LL+EM ++VPDGIV FF SY YM+
Sbjct: 12 DLSCSLQIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYME 71
Query: 547 EIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCG-RGAVFFSVARGKVA 605
+A W + GIL+ I ++KL+FIETQD ET++AL+ Y++ G G V G+
Sbjct: 72 STVAAWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEVGIIGGEGREMLRVQGGEGP 131
Query: 606 E 606
E
Sbjct: 132 E 132
>UNIPROTKB|I3LNA6 [details] [associations]
symbol:I3LNA6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] InterPro:IPR014013 PROSITE:PS51193 GO:GO:0005634
GO:GO:0006915 GO:GO:0043066 GO:GO:0043588 GO:GO:0006979
GO:GO:0008283 GO:GO:0007568 GO:GO:0001701 GO:GO:0030198
GO:GO:0040016 GO:GO:0009791 GO:GO:0060218 GO:GO:0035264
GO:GO:0021510 GO:GO:0030282 GO:GO:0006289 GO:GO:0043388
GO:GO:0009650 GO:GO:0035315 GO:GO:0043249 GO:GO:0032289
GO:GO:0048820 GeneTree:ENSGT00550000075092 GO:GO:0016817
Ensembl:ENSSSCT00000028846 OMA:QAYPLEV Uniprot:I3LNA6
Length = 90
Score = 274 (101.5 bits), Expect = 7.2e-23, P = 7.2e-23
Identities = 53/86 (61%), Positives = 66/86 (76%)
Query: 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYV 60
M ++ + VYFPYD IYPEQ+SYMLELKR LDAKGH +LEMP+GTGKT++LL+LI +Y
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 61 LSKPENPVKLIYCTRTVHEMEKTLAE 86
+ P KLIYC+RTV E+EK E
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVSLE 86
>UNIPROTKB|A8WS58 [details] [associations]
symbol:rtel-1 "Regulator of telomere elongation helicase 1
homolog" species:6238 "Caenorhabditis briggsae" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0010569 "regulation of double-strand break repair via
homologous recombination" evidence=ISS] InterPro:IPR006554
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS00690 PROSITE:PS51193
SMART:SM00488 SMART:SM00491 INTERPRO:IPR013020 GO:GO:0005524
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
GO:GO:0051539 GO:GO:0004003 GO:GO:0010569 eggNOG:COG1199
TIGRFAMs:TIGR00604 KO:K11136 EMBL:HE601486 RefSeq:XP_002639805.1
EnsemblMetazoa:CBG02256 GeneID:8581799 KEGG:cbr:CBG02256
CTD:8581799 WormBase:CBG02256 HOGENOM:HOG000154218 OMA:ENDIENQ
Uniprot:A8WS58
Length = 994
Score = 298 (110.0 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 161/701 (22%), Positives = 295/701 (42%)
Query: 70 LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDS 129
+ Y +RT ++E+ + EL +T + IL SR++ C+N +V + +
Sbjct: 105 IFYASRTHSQLEQVVHELN-----RTEYKWVKTTILG----SREHFCINQKVKKIKESNR 155
Query: 130 VDAACR----KRTASWVR---ALAAENPN--IETCEFF--ENYEKAASAAVLPPGVYTLQ 178
CR KR+ + AL + N +E E E++ K + + P Y +
Sbjct: 156 QAHVCRGLVSKRSCHYYNKFDALTTDKANEILEKGEAMDIEDFVKIGTQNSICP--YFMS 213
Query: 179 DLRAFGKQQGWCPY-FLA------RHMVQFAN-VVVYSYQYLLDPKVAGIISKEMQKESV 230
R+ + PY ++ R+ + N +V++ + L+ S E+ S+
Sbjct: 214 RQRSETAELILLPYNYIIDPKMRRRYKLDLKNSIVIFDEAHNLESICESNASAELSSTSI 273
Query: 231 VV-FDEAHNIDNVCIEA---LSVSVRRQTLEGATRNLSRINQEIERFKATD-------AG 279
+ +E + + +E +T T+ + + IE + D
Sbjct: 274 ALCIEELKKVLALLVEEEENAREEADNETEAFGTQKIDLTKKLIENLRTEDLMALLEKVF 333
Query: 280 RLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEA-VPGNIRRAEHFLHVLRRLVQ 338
L +++L E L+ ++P D S+ A+ + L + GN E F+ VLR +
Sbjct: 334 TLEENFDKLFESDQLK-SVPPLDGKASDGAILLETLANSGCDGN--SVERFVDVLRDAIS 390
Query: 339 YLRGRLETENVEKEGP-VSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHI 397
YL + E ++ ++G + VA L Y H+ + + D E + +
Sbjct: 391 YLLSKNEEVSLTEKGDGMESVADF----------LLSIYST-HAQEVAAAVGD--EHIKL 437
Query: 398 QTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDR-FQSVVI 456
D AT+ R + I ++ V++ C AS++++ + R ++V++
Sbjct: 438 ADRVDPATVA----RNCKLYIRKDSGKL------VIKYFCFQASISMRMLKMRGVRNVLL 487
Query: 457 TSGTLSPIDL--YPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDP 514
SGTLSPI Y LNF ++ +L + + ++TRG V + F R +
Sbjct: 488 ASGTLSPIQAFTYNMGLNFGAILENEH--ALKQVPVLTSIVTRGKHGGLVGS-FQNRKNI 544
Query: 515 GVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATW-------NDSG--ILKEIMQHK 565
+ G+ L+ ++ P G++ FF SYS MDE++ W +DS +++ + K
Sbjct: 545 EYVSDVGESLIRVMETTPQGVLVFFSSYSQMDELVEVWKKTKRGASDSPETFWEKMEKTK 604
Query: 566 LVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
+ +E + + Y + GA +V RGKV+EGIDF R VI+ G+P+
Sbjct: 605 KIAVEPRAKEQLAAVRLRYTQGVSEPHGAALLAVCRGKVSEGIDFCDAESRAVIIVGIPY 664
Query: 626 QYTLSKILLARLEYLRDTFQIKE--------GDFLTFDALRQAAQCVGRVIRSKADYGMM 677
+ ++ + YL D K+ D+ +A R Q +GRV+R K D+G +
Sbjct: 665 PPIHDERVVLKKMYLDDLMGRKDLTNEPQSSRDWYQMEAFRAVNQAIGRVLRHKNDFGTV 724
Query: 678 IFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAR 718
+ D RY+ K P W+ + + N + AL AR
Sbjct: 725 VLIDTRYASA-KPEMFPKWLRNTISRCDSN---NCALKTAR 761
Score = 208 (78.3 bits), Expect = 6.3e-13, P = 6.3e-13
Identities = 66/273 (24%), Positives = 126/273 (46%)
Query: 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS-KPENP 67
++ FP++ Y Q +M + LD K LE PTGTGKT++LL ++V K P
Sbjct: 18 SIKFPFEP-YECQRIFMKNVIDVLDMKLDAALESPTGTGKTLSLLCSTLAWVQKLKESKP 76
Query: 68 VKLI-YCTRTVHEMEKTLAELK--LLHN--YQTRHLGPAAKILAIGLSSRKNLCVNSRVL 122
+ + + EKT +LK + Y +R +++ L+ + V + +L
Sbjct: 77 MDFATWQSSGAGGAEKTEDKLKNSFIPTIFYASRTHSQLEQVVH-ELNRTEYKWVKTTIL 135
Query: 123 AAENRDSVDAACRK-----RTASWVRALAAENPNIETCEFFENYEKAASAA---VLPPG- 173
+ ++ +K R A R L ++ +C ++ ++ + +L G
Sbjct: 136 GSREHFCINQKVKKIKESNRQAHVCRGLVSKR----SCHYYNKFDALTTDKANEILEKGE 191
Query: 174 VYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVF 233
++D G Q CPYF++R + A +++ Y Y++DPK+ ++ K S+V+F
Sbjct: 192 AMDIEDFVKIGTQNSICPYFMSRQRSETAELILLPYNYIIDPKMRRRYKLDL-KNSIVIF 250
Query: 234 DEAHNIDNVCIEALSVSVRRQTLEGATRNLSRI 266
DEAHN++++C S + ++ L ++
Sbjct: 251 DEAHNLESICESNASAELSSTSIALCIEELKKV 283
>UNIPROTKB|I3LBL1 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031965 "nuclear membrane" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
GO:GO:0005524 GO:GO:0005737 GO:GO:0003677 GO:GO:0006357
GO:GO:0004003 InterPro:IPR014001 SMART:SM00487
GeneTree:ENSGT00530000063199 EMBL:CU914462 EMBL:CU694840
Ensembl:ENSSSCT00000025154 OMA:TEAWDIE Uniprot:I3LBL1
Length = 709
Score = 163 (62.4 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 62/229 (27%), Positives = 103/229 (44%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR
Sbjct: 250 KIYFGTRTHKQIAQITRELR-----RTAYSGVPMTIL----SSRDHTCVHPEVVGNFNRK 300
Query: 129 SVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP--GV---YTLQDLRAF 183
C + + N ++C + K + L G+ + +++L
Sbjct: 301 E---NCME---------LLDGRNGKSCYLYHGIHKISDQRTLQTLHGMCKAWDIEELVTL 348
Query: 184 GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC 243
GK+ CPY+ AR ++Q A+++ Y YLLD ++ + + KE VV+ DEAHNI++
Sbjct: 349 GKKIKACPYYTARELMQDADIIFCPYNYLLDVQIRESMEINL-KEQVVILDEAHNIEDCA 407
Query: 244 IEALSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGL 292
E+ S SV L A L + I + D +RA L+ L
Sbjct: 408 RESASYSVTEVQLRFARDELD--SMVINNIRKKDHEPIRAVCYSLINWL 454
Score = 126 (49.4 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 27/66 (40%), Positives = 39/66 (59%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS 62
+ + V + FPY YP Q + M + R L++K HCLLE PTG+GK++ALL ++ S
Sbjct: 8 YTIGGVKIDFPY-KAYPSQLAMMNSIVRGLNSKQHCLLESPTGSGKSLALLCSALAWQQS 66
Query: 63 KPENPV 68
PV
Sbjct: 67 LSGKPV 72
Score = 82 (33.9 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 25/111 (22%), Positives = 43/111 (38%)
Query: 432 VLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCIC 491
VL C + ++A + + ++V+TSGTLSP+ + L + + +
Sbjct: 593 VLNFWCLNPAVAFSDINGKVWNIVLTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVW 652
Query: 492 PMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSY 542
+ G + F G LL+ + V GI+CF SY
Sbjct: 653 VGTIGSGPQGRNLCATFQHTETFAFQDEVGALLLSVCQTVSQGILCFLPSY 703
>UNIPROTKB|G3N0I3 [details] [associations]
symbol:BRIP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00491
INTERPRO:IPR013020 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004003 TIGRFAMs:TIGR00604 GeneTree:ENSGT00530000063199
EMBL:DAAA02048371 Ensembl:ENSBTAT00000065712 Uniprot:G3N0I3
Length = 756
Score = 256 (95.2 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 124/493 (25%), Positives = 195/493 (39%)
Query: 227 KESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL-SRINQEIERFKATDAGRLRAEY 285
KE VV+ DEAHNI++ E+ S SV L A L S IN I + D LRA
Sbjct: 248 KEQVVILDEAHNIEDCARESASYSVTEVQLRFARDELDSMINYNIRK---KDHEPLRAVC 304
Query: 286 NRLVEGLALRGNLPIADAWLSNPAL--PSDILKEAVPGNIRRAE------HFLHVLRR-- 335
L+ L + + S+ + S++L I A HF VL+R
Sbjct: 305 CSLINWLEASSEHLVERNYESSCKVWSGSEMLLNLHKMGITTATFPILQGHFSAVLQREE 364
Query: 336 LVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFL 395
V + G+ E + PV I+A I K L + L D D +
Sbjct: 365 KVPSIHGKEEAREI----PV-----ISASTQIMLKGLFMVLDYL--FRQNSRFAD-DYKV 412
Query: 396 HIQTICDFATLVGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVV 455
IQ + T G I+ + VL C + ++A + + ++V
Sbjct: 413 AIQQTYSWINQSDTTDHGLLILSKNKKRLRQKAAVRVLNFWCLNPAVAFSDINGKVWAIV 472
Query: 456 ITSGTLSPIDLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPG 515
+TSGTLSP+ + L + + + + G + F
Sbjct: 473 LTSGTLSPMKSFSSELGVTFTIQLEANHVINNSQVWVGTIGSGPKGRSLCATFQHTETFE 532
Query: 516 VARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ--D 573
G LL+ + + GI+CF SY ++++ W +G+ + K V +E Q +
Sbjct: 533 FQDEVGALLLSVCQTISQGILCFLPSYKLLEKLKERWLSTGLWYNLELVKTVIVEPQGGE 592
Query: 574 VVETTLALDNYRKACDC-GR--GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLS 630
++ L Y A G GA+ +V RGKV+EG+DF R V+ G+PF
Sbjct: 593 KIDFDELLQMYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVVTIGIPFPNVKD 652
Query: 631 KILLARLEYLRDTFQIK---EG-DFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSR 686
+ + +Y +++ G + A R Q +GR IR K D+G +I D R+
Sbjct: 653 LQVELKRQYNDQHSKLRGLLPGRQWYEIQAYRALNQALGRCIRHKNDWGALILVDDRFRS 712
Query: 687 HDKR--SKLPGWI 697
+ R S L W+
Sbjct: 713 NPSRYISGLSKWV 725
Score = 47 (21.6 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 69 KLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRD 128
K+ + TRT ++ + EL+ +T + G IL SSR + CV+ V+ NR+
Sbjct: 181 KIYFGTRTHKQIAQITRELQ-----RTAYSGVPMTIL----SSRDHTCVHPEVMGNFNRN 231
>UNIPROTKB|K7ENL1 [details] [associations]
symbol:ERCC2 "TFIIH basal transcription factor complex
helicase XPD subunit" species:9606 "Homo sapiens" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 PROSITE:PS51193
EMBL:L47234 HGNC:HGNC:3434 Ensembl:ENST00000586856 Uniprot:K7ENL1
Length = 109
Score = 186 (70.5 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 39/96 (40%), Positives = 53/96 (55%)
Query: 64 PENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLA 123
P KLIYC+RTV E+EK + EL+ L N+ + G L + LSSRKNLC++ V
Sbjct: 14 PLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTP 73
Query: 124 AENRDSVDAACRKRTASWVRALAAENPNIETCEFFE 159
VD C TAS+VRA + ++ C F+E
Sbjct: 74 LRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYE 109
Score = 44 (20.5 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 10/15 (66%), Positives = 11/15 (73%)
Query: 25 MLELKRALDAKGHCL 39
M ELKR LDAK + L
Sbjct: 1 MRELKRTLDAKAYPL 15
>GENEDB_PFALCIPARUM|MAL13P1.134 [details] [associations]
symbol:MAL13P1.134 "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0016020 "membrane"
evidence=ISS] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 GO:GO:0005524 GO:GO:0016020 GO:GO:0003677
GO:GO:0004003 EMBL:AL844509 KO:K11273 PANTHER:PTHR11472:SF5
RefSeq:XP_001349985.1 ProteinModelPortal:Q8IE72
EnsemblProtists:MAL13P1.134:mRNA GeneID:813685 KEGG:pfa:MAL13P1.134
EuPathDB:PlasmoDB:PF3D7_1324500 HOGENOM:HOG000281821
ProtClustDB:CLSZ2500734 Uniprot:Q8IE72
Length = 1099
Score = 117 (46.2 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 53/209 (25%), Positives = 100/209 (47%)
Query: 453 SVVITSGTLSPIDLYPRL-LNFHPVVSRSFKMS--LTRDCICPMVLTRG---SDQLPVST 506
+V++ GTL P++ + L LN++ + F + I + + SD + +
Sbjct: 741 NVILIGGTLYPMEEFLLLFLNYNKNKIKLFSSDYIFKKQNIFARIFSTNLISSDFIDNTY 800
Query: 507 KFDMRSDPGVARNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSG--ILKEIMQ 563
K ++ D + N + + M++ + G + FF SY+++++ N G I I +
Sbjct: 801 KNRLKKDHLL--NLA-IYIYMITFNILYGNIIFFPSYNFLNDFYNFLNKEGEYIFNRIKK 857
Query: 564 HKLVFIETQD---VVETTLA-LDNYRKACDCGR---GAVFFSVARGKVAEGIDFDRHYGR 616
K VF E ++ +V+ + ++N + R G + F V GK++EGI+F R
Sbjct: 858 KKFVFFEKKNDDTIVKNYMNNIENIKNIDPNLRIQNGCILFCVMNGKLSEGINFYDDLCR 917
Query: 617 LVIMFGVPF---QYTLSKILLARLEYLRD 642
V++ G+PF + K LL RL+Y R+
Sbjct: 918 NVVVVGIPFIKHDSVVDKNLL-RLKYYRE 945
Score = 93 (37.8 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 26/109 (23%), Positives = 60/109 (55%)
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGW--CPYFLARHMVQFAN 203
++EN +IET +NY ++ ++D++ K + CPY+L++ ++ A+
Sbjct: 324 SSENEDIET---IDNY--ILITKLINNRNVDIEDIKDICKNEHIEICPYYLSKENIKNAD 378
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI-DNV-CIEALSVS 250
+++ Y +L+ + + + K ++V+FDE+ NI +N+ ++S+S
Sbjct: 379 IILLPYICILNENIRNNLKINI-KNNIVIFDESQNIIENINSCNSVSIS 426
Score = 87 (35.7 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 656 ALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRD 703
A++ QC+GR +R D+ F D R+S+ + LP +I +H+ D
Sbjct: 980 AMKIINQCIGRSLRHVNDFSSFFFLDYRFSKKEIFQNLPSFIKTHIND 1027
Score = 74 (31.1 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 57 TSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLC 116
+ Y + + ++ C+RT ++ + ELK + + +G I I + SRK+LC
Sbjct: 211 SDYSIDDKDKKKQIFICSRTQSQLNQYFHELKKIE----KKMGEDFSINMIIIGSRKHLC 266
Query: 117 VNSRVLAA-ENRDSVDAACR 135
+N L +N + ++ C+
Sbjct: 267 INEAFLKKYKNINELNDCCK 286
Score = 55 (24.4 bits), Expect = 7.0e-13, Sum P(4) = 7.0e-13
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 37 HCLLEMPTGTGKTIALL-SLITSYVLSKPENPVKLIYCTRTVHEMEKT 83
H + EM TG+GK++ LL SLI Y L K + + L + + E++ T
Sbjct: 87 HIICEMKTGSGKSLTLLTSLI--YWLWK--HKMNLFFIKENI-ELKST 129
Score = 42 (19.8 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 263 LSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+ R N+EI+RF + +++ + RL + N+
Sbjct: 2 VERFNEEIKRFFPFEPYKIQLNFMRLFYQVLTSSNI 37
Score = 37 (18.1 bits), Expect = 9.9e-07, Sum P(4) = 9.9e-07
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 618 VIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFL 652
VI+ G Y + + LL L Y ++ ++ D++
Sbjct: 742 VILIGGTL-YPMEEFLLLFLNYNKNKIKLFSSDYI 775
>UNIPROTKB|Q8IE72 [details] [associations]
symbol:MAL13P1.134 "DEAD box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0016020 "membrane"
evidence=ISS] InterPro:IPR006554 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 InterPro:IPR027076
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 SMART:SM00488
SMART:SM00491 GO:GO:0005524 GO:GO:0016020 GO:GO:0003677
GO:GO:0004003 EMBL:AL844509 KO:K11273 PANTHER:PTHR11472:SF5
RefSeq:XP_001349985.1 ProteinModelPortal:Q8IE72
EnsemblProtists:MAL13P1.134:mRNA GeneID:813685 KEGG:pfa:MAL13P1.134
EuPathDB:PlasmoDB:PF3D7_1324500 HOGENOM:HOG000281821
ProtClustDB:CLSZ2500734 Uniprot:Q8IE72
Length = 1099
Score = 117 (46.2 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 53/209 (25%), Positives = 100/209 (47%)
Query: 453 SVVITSGTLSPIDLYPRL-LNFHPVVSRSFKMS--LTRDCICPMVLTRG---SDQLPVST 506
+V++ GTL P++ + L LN++ + F + I + + SD + +
Sbjct: 741 NVILIGGTLYPMEEFLLLFLNYNKNKIKLFSSDYIFKKQNIFARIFSTNLISSDFIDNTY 800
Query: 507 KFDMRSDPGVARNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSG--ILKEIMQ 563
K ++ D + N + + M++ + G + FF SY+++++ N G I I +
Sbjct: 801 KNRLKKDHLL--NLA-IYIYMITFNILYGNIIFFPSYNFLNDFYNFLNKEGEYIFNRIKK 857
Query: 564 HKLVFIETQD---VVETTLA-LDNYRKACDCGR---GAVFFSVARGKVAEGIDFDRHYGR 616
K VF E ++ +V+ + ++N + R G + F V GK++EGI+F R
Sbjct: 858 KKFVFFEKKNDDTIVKNYMNNIENIKNIDPNLRIQNGCILFCVMNGKLSEGINFYDDLCR 917
Query: 617 LVIMFGVPF---QYTLSKILLARLEYLRD 642
V++ G+PF + K LL RL+Y R+
Sbjct: 918 NVVVVGIPFIKHDSVVDKNLL-RLKYYRE 945
Score = 93 (37.8 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 26/109 (23%), Positives = 60/109 (55%)
Query: 146 AAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGW--CPYFLARHMVQFAN 203
++EN +IET +NY ++ ++D++ K + CPY+L++ ++ A+
Sbjct: 324 SSENEDIET---IDNY--ILITKLINNRNVDIEDIKDICKNEHIEICPYYLSKENIKNAD 378
Query: 204 VVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNI-DNV-CIEALSVS 250
+++ Y +L+ + + + K ++V+FDE+ NI +N+ ++S+S
Sbjct: 379 IILLPYICILNENIRNNLKINI-KNNIVIFDESQNIIENINSCNSVSIS 426
Score = 87 (35.7 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 656 ALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRD 703
A++ QC+GR +R D+ F D R+S+ + LP +I +H+ D
Sbjct: 980 AMKIINQCIGRSLRHVNDFSSFFFLDYRFSKKEIFQNLPSFIKTHIND 1027
Score = 74 (31.1 bits), Expect = 8.9e-15, Sum P(4) = 8.9e-15
Identities = 19/80 (23%), Positives = 39/80 (48%)
Query: 57 TSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLC 116
+ Y + + ++ C+RT ++ + ELK + + +G I I + SRK+LC
Sbjct: 211 SDYSIDDKDKKKQIFICSRTQSQLNQYFHELKKIE----KKMGEDFSINMIIIGSRKHLC 266
Query: 117 VNSRVLAA-ENRDSVDAACR 135
+N L +N + ++ C+
Sbjct: 267 INEAFLKKYKNINELNDCCK 286
Score = 55 (24.4 bits), Expect = 7.0e-13, Sum P(4) = 7.0e-13
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 37 HCLLEMPTGTGKTIALL-SLITSYVLSKPENPVKLIYCTRTVHEMEKT 83
H + EM TG+GK++ LL SLI Y L K + + L + + E++ T
Sbjct: 87 HIICEMKTGSGKSLTLLTSLI--YWLWK--HKMNLFFIKENI-ELKST 129
Score = 42 (19.8 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 9/36 (25%), Positives = 19/36 (52%)
Query: 263 LSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNL 298
+ R N+EI+RF + +++ + RL + N+
Sbjct: 2 VERFNEEIKRFFPFEPYKIQLNFMRLFYQVLTSSNI 37
Score = 37 (18.1 bits), Expect = 9.9e-07, Sum P(4) = 9.9e-07
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 618 VIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFL 652
VI+ G Y + + LL L Y ++ ++ D++
Sbjct: 742 VILIGGTL-YPMEEFLLLFLNYNKNKIKLFSSDYI 775
>UNIPROTKB|Q724Q2 [details] [associations]
symbol:LMOf2365_0172 "Putative uncharacterized protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 PROSITE:PS51194 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0004003 EMBL:AE017262 GenomeReviews:AE017262_GR
eggNOG:COG1199 HOGENOM:HOG000183657 OMA:YLAFFSS RefSeq:YP_012782.1
ProteinModelPortal:Q724Q2 STRING:Q724Q2 GeneID:2798762
KEGG:lmf:LMOf2365_0172 PATRIC:20321523 ProtClustDB:CLSK2518435
Uniprot:Q724Q2
Length = 779
Score = 141 (54.7 bits), Expect = 7.4e-14, Sum P(3) = 7.4e-14
Identities = 83/321 (25%), Positives = 137/321 (42%)
Query: 414 FSIIIEPFDERMP------HIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLY 467
++ I E +DER H + QL C D + + S V+ S TL PID Y
Sbjct: 482 YTAIAEFYDERYVTQVTRNHRDLEIKQL-CLDPAFLLSERLKLGSSSVLFSATLRPIDYY 540
Query: 468 PRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEM 527
+L SR S + +++ +D +STK+ MR + A L +
Sbjct: 541 TNVLGGQEDTSRMIFSSPFKQKNMHLLV---ADY--ISTKYQMRENSMEA--VVDALYAL 593
Query: 528 VSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKA 587
VS + FF S+ Y+ ++ + + + + + E Q E L D + +
Sbjct: 594 VSGKNGNYIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQR--EHFLE-DFHAEN 650
Query: 588 CDCGRGAVFFSVARGKVAEGIDF--DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQ 645
+ G F V G +EG+D +R G V+ G+ Q L+ +Y +T
Sbjct: 651 VETLIG---FCVLGGVFSEGVDLRGNRLVGAAVVGVGLA-QLNHESDLIK--DYYNET-- 702
Query: 646 IKEG-DFL-TFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRD 703
I +G D+ + + Q VGRVIR ++D G+++ ++R+S R+ P +H
Sbjct: 703 IGQGFDYAYQIPGMNKVLQAVGRVIRGESDRGVVLLIEERFSADRYRALFP----THWNH 758
Query: 704 AHLNLSTDMALHIAREVGNFY 724
A STD I+REV F+
Sbjct: 759 AKTVKSTD---DISREVAGFW 776
Score = 96 (38.9 bits), Expect = 7.4e-14, Sum P(3) = 7.4e-14
Identities = 30/123 (24%), Positives = 56/123 (45%)
Query: 155 CEFFENYEKAASAAVLP----PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQ 210
C+F Y + A+ T Q + + ++ CP+ L+ + F +V+V Y
Sbjct: 289 CQFARGYYDRLNEALFDMLQSEEAITRQVVEGYARKYTLCPFELSLDVALFCDVIVCDYN 348
Query: 211 YLLDPKV--AGIISKEMQKESVVVFDEAHNIDNVCIEALSVSVRRQTLEGATRNL-SRIN 267
YL DP V ++ K + +V DE HN+ + S ++++ T+ R L S+ N
Sbjct: 349 YLFDPVVYLKRFFAEGPGKYTFLV-DEVHNLVDRARSMYSATLKKSTVMQVKRGLDSKKN 407
Query: 268 QEI 270
+ +
Sbjct: 408 KRL 410
Score = 75 (31.5 bits), Expect = 7.4e-14, Sum P(3) = 7.4e-14
Identities = 30/113 (26%), Positives = 55/113 (48%)
Query: 5 LEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA-LLSLITSYVLSK 63
++++T FPYDN Q + + R + ++ E PTG GKT++ L I + K
Sbjct: 177 IQELT--FPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGK 234
Query: 64 PENPVKLIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLC 116
+ KL Y T + + +AE L + R G AA+ ++ ++++ +C
Sbjct: 235 TD---KLFYFTAKT--ITRQVAEDAL---DEMRRKGLAAR--SVTITAKDKIC 277
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 8/31 (25%), Positives = 19/31 (61%)
Query: 264 SRINQEIERFKATD-AGRLRAEYNRLVEGLA 293
++I+Q +++ + A +R R+V+G+A
Sbjct: 35 TKIHQLLQKEAGEEYAAEVRLNLERIVDGIA 65
>UNIPROTKB|H0YFY8 [details] [associations]
symbol:DDX11 "Probable ATP-dependent RNA helicase DDX11"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0032508 "DNA
duplex unwinding" evidence=IEA] InterPro:IPR006555
InterPro:IPR027076 Pfam:PF13307 SMART:SM00491 GO:GO:0005524
GO:GO:0003676 GO:GO:0008026 PANTHER:PTHR11472:SF5 HGNC:HGNC:2736
EMBL:AC008013 Ensembl:ENST00000539702 Uniprot:H0YFY8
Length = 172
Score = 173 (66.0 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 41/111 (36%), Positives = 60/111 (54%)
Query: 593 GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTF-----QIK 647
GA+ SV GK++EGI+F + GR V+M G+PF S L ++ YL T Q
Sbjct: 34 GALLLSVVGGKMSEGINFSDNLGRCVVMVGMPFPNIRSAELQEKMAYLDQTLPRAPGQAP 93
Query: 648 EGDFLTFDALRQAA-QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWI 697
G L + +A Q +GR IR + D+ ++ D+RY+R +KLP WI
Sbjct: 94 PGKALVENLCMKAVNQSIGRAIRHQKDFASVVLLDQRYARPPVLAKLPAWI 144
>UNIPROTKB|Q4KBT0 [details] [associations]
symbol:PFL_3198 "DEAD 2 domain protein" species:220664
"Pseudomonas protegens Pf-5" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 PROSITE:PS51194
SMART:SM00491 GO:GO:0005524 GO:GO:0003677 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0004003 eggNOG:COG1199
RefSeq:YP_260303.1 ProteinModelPortal:Q4KBT0 STRING:Q4KBT0
GeneID:3478111 KEGG:pfl:PFL_3198 PATRIC:19875717
HOGENOM:HOG000183657 OMA:YLAFFSS ProtClustDB:CLSK866841
BioCyc:PFLU220664:GIX8-3213-MONOMER Uniprot:Q4KBT0
Length = 758
Score = 128 (50.1 bits), Expect = 8.9e-11, Sum P(3) = 8.9e-11
Identities = 58/250 (23%), Positives = 111/250 (44%)
Query: 452 QSVVITSGTLSPIDLYPRLLNFHP-VVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDM 510
+S V+ S TL+P Y LL V + + +++R +ST++
Sbjct: 520 RSTVLFSATLNPRGYYADLLGLPDNTVWLDVESPFDAGQLEVQIVSR------ISTRYAH 573
Query: 511 RSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIE 570
R +A +L+ + P + FF S+ Y+ ++ +G+L +++ +
Sbjct: 574 RQ-ASLAPIV-ELMARQFAARPGNYLAFFSSFDYLQQV------AGLLAREHPDIVLWCQ 625
Query: 571 TQDVVETTLA--LDNYRKACDCGRGAVFFSVARGKVAEGIDF--DRHYGRLVIMFGVPFQ 626
++ + E + L +R G+G + F+V G EGID + G V G+P
Sbjct: 626 SRGMDEASRQDFLQQFRPE---GQG-IGFAVLGGAFGEGIDLPGSKLIGAFVATLGLPQL 681
Query: 627 YTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSR 686
L++ + R+ L + + +L + L++ Q GRVIR ++D G+++ D R++
Sbjct: 682 NPLNEQMKQRMAALFGSGY--DYTYL-YPGLQKVVQAAGRVIRGQSDRGVLVLIDDRFAE 738
Query: 687 HDKRSKLPGW 696
R LP W
Sbjct: 739 PRVRQLLPSW 748
Score = 100 (40.3 bits), Expect = 8.9e-11, Sum P(3) = 8.9e-11
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 157 FFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPK 216
F++ A AA P + Q LR + CPY+L++ M +++++VV Y Y D
Sbjct: 293 FYDRLPAARQAASQVP-LLDRQALREVALEHQVCPYYLSQEMARWSDLVVADYNYYFDFS 351
Query: 217 VAGI-ISKEMQKESVVVFDEAHNI 239
+++ Q + V+ DEAHN+
Sbjct: 352 ALLFGLAQANQWQVAVLVDEAHNL 375
Score = 54 (24.1 bits), Expect = 8.9e-11, Sum P(3) = 8.9e-11
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLL-EMPTGTGKTIALL 53
FP+ Q + + +A+ G CLL + PTG GKT+ +
Sbjct: 178 FPHAEFRRGQRALAESVYKAVST-GRCLLAQAPTGIGKTLGTI 219
>UNIPROTKB|Q880W4 [details] [associations]
symbol:PSPTO_3036 "Uncharacterized protein" species:223283
"Pseudomonas syringae pv. tomato str. DC3000" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
PROSITE:PS51194 SMART:SM00491 GO:GO:0005524 GO:GO:0003677
GO:GO:0004003 EMBL:AE016853 GenomeReviews:AE016853_GR
eggNOG:COG1199 HOGENOM:HOG000183657 OMA:YLAFFSS
ProtClustDB:CLSK866841 RefSeq:NP_792831.1 GeneID:1184693
KEGG:pst:PSPTO_3036 PATRIC:19997439
BioCyc:PSYR223283:GJIX-3084-MONOMER Uniprot:Q880W4
Length = 761
Score = 108 (43.1 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 81/335 (24%), Positives = 138/335 (41%)
Query: 379 LHSLMLTLEITDTDEFL-HIQTICDFATLVGTYTR--GFSIIIEPFDE-------RMPHI 428
L+SL L + T D F H Q + D TL G Y GF+ I E FDE R
Sbjct: 442 LNSLNLCIS-TIGDHFNEHPQAV-D-GTLQGFYLEAIGFARIAELFDEHFIFDITRRDAG 498
Query: 429 PDPVL-QLSCHDASLA--VKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFKMSL 485
VL +LS + A ++P +S V+ S TL+P Y L P + + + +
Sbjct: 499 GKRVLSRLSLRNVVPARFIRPRLSAARSTVLFSATLNPRHYYTDWLGL-P--ANTAWIDV 555
Query: 486 TRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYM 545
+ R + +ST+F R +A +L+ + P + FF S+ Y+
Sbjct: 556 ESPFHHDQLDVRIVSR--ISTRFTHRQ-ASLAPIV-ELMATQFAARPGNYLAFFSSFDYL 611
Query: 546 DEIIATWNDSGILKEIMQHKLVFIETQDVVETT--LALDNYRKACDCGRGAVFFSVARGK 603
++ + ++ H ++ + + + E L+ + + G G F+V G
Sbjct: 612 LQV------AELMARTHPHITLWQQARGMAEGERHAFLERFTLSSQ-GIG---FAVLGGA 661
Query: 604 VAEGIDFD--RHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAA 661
EGID R G + G+P +++ R+ L F + +++
Sbjct: 662 FGEGIDLPGARLIGAFIATLGLPQLNPVNEQFKQRMAAL---FGAGYDYTYLYPGVQKVV 718
Query: 662 QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGW 696
Q GRVIRS++D G+++ D R++ P W
Sbjct: 719 QAAGRVIRSQSDSGVVMLIDDRFAERKVAQLFPAW 753
Score = 104 (41.7 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 35/130 (26%), Positives = 61/130 (46%)
Query: 143 RALAAENP----NIETCE----FFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFL 194
R A E+P N ++C F++ A SAA+ P + +R CPY+L
Sbjct: 277 RDKACEHPDKACNADSCPLARGFYDRLPAARSAALESPWL-NQAGVREAALLHQVCPYYL 335
Query: 195 ARHMVQFANVVVYSYQYLLDPKVA--GIISKEMQKESVVVFDEAHNIDNVCIEALSVSVR 252
++ + ++A+VV+ Y Y D G+ + +V+V DEAHN+ + S S+
Sbjct: 336 SQELARWADVVIADYNYYFDLSALLFGLGQLNQWRVAVLV-DEAHNMVERARQMYSASLD 394
Query: 253 RQTLEGATRN 262
+ L+ +N
Sbjct: 395 QSQLKALIQN 404
Score = 69 (29.3 bits), Expect = 1.5e-10, Sum P(3) = 1.5e-10
Identities = 26/107 (24%), Positives = 48/107 (44%)
Query: 12 FPYDNIYPEQYSYMLELKRALDAKGHCLL-EMPTGTGKTIA-LLSLITSYVLSKPENPVK 69
FP+ + Q + + +A+ G CL+ + PTG GKT+ L L+ + + K + K
Sbjct: 184 FPHASFRTGQRALAESVYKAVST-GCCLMAQAPTGIGKTVGTLFPLLKAAPVQKLD---K 239
Query: 70 LIYCTRTVHEMEKTLAELKLLHNYQTRHLGPAAKILAIGLSSRKNLC 116
+ + T L L+++ RH P ++ + L +R C
Sbjct: 240 IFFLTAKTPGRRLALDALEVI-----RHSAPELRLRVLELVARDKAC 281
Score = 42 (19.8 bits), Expect = 7.7e-08, Sum P(3) = 7.7e-08
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 4 KLEDVTVYFPYDNIYPEQYSYMLE 27
+LE+VT+ Y NI EQ + + E
Sbjct: 120 QLEEVTLALVYFNIVSEQETLIRE 143
>UNIPROTKB|J3QKX0 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR006555 Pfam:PF13307
SMART:SM00491 GO:GO:0005524 GO:GO:0003676 GO:GO:0008026
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
Ensembl:ENST00000584322 Uniprot:J3QKX0
Length = 180
Score = 149 (57.5 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 38/110 (34%), Positives = 55/110 (50%)
Query: 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTL- 579
G LL+ + V GI+CF SY ++++ W +G+ + K V +E Q +T
Sbjct: 5 GALLLSVCQTVSQGILCFLPSYKLLEKLKERWLSTGLWHNLELVKTVIVEPQGGEKTNFD 64
Query: 580 -ALDNYRKACDC-GR--GAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625
L Y A G GA+ +V RGKV+EG+DF R VI G+PF
Sbjct: 65 ELLQVYYDAIKYKGEKDGALLVAVCRGKVSEGLDFSDDNARAVITIGIPF 114
>UNIPROTKB|Q9KQZ2 [details] [associations]
symbol:VC1855 "ATP-dependent helicase, DinG family"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0006259 "DNA
metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR006555 InterPro:IPR010614 InterPro:IPR014013
Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193 PROSITE:PS51194
SMART:SM00491 GO:GO:0005524 GO:GO:0003677 GO:GO:0006259
GenomeReviews:AE003852_GR GO:GO:0004003 GO:GO:0004386 KO:K03722
ProtClustDB:PRK11747 EMBL:AE004261 PIR:B82148 RefSeq:NP_231489.2
DNASU:2613609 GeneID:2613609 KEGG:vch:VC1855 PATRIC:20082752
OMA:CPYKLYQ Uniprot:Q9KQZ2
Length = 703
Score = 120 (47.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 39/140 (27%), Positives = 67/140 (47%)
Query: 190 CPYFLARHMVQFANVVVYSYQYLL-DPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
CP+ AR + A+V++ ++ ++ D + G + +E++ VFDEAH++ V E S
Sbjct: 213 CPFQKARSELDKADVIIANHSLVMADADLGGGVILPAPEETIYVFDEAHHLPTVAREHAS 272
Query: 249 VSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNP 308
+ TL+GA L ++NQ + +F A + RAE A++ +P +
Sbjct: 273 AAA---TLKGAASWLEKLNQSLSKFTALGDEK-RAERFAEEARTAIQYLIPTLNQ----- 323
Query: 309 ALPSDILKEAVPGNIRRAEH 328
LP + E I R EH
Sbjct: 324 -LPKQFMAEQFVEGIYRFEH 342
Score = 94 (38.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 25/103 (24%), Positives = 49/103 (47%)
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYL 640
L+ ++K + + +V F G +EG+D +I+ +PF S + A EY+
Sbjct: 580 LNKHKKLIEKQKTSVLFGT--GSFSEGLDLPGELLENLIITKIPFAVPTSPVEQAHAEYI 637
Query: 641 RDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKR 683
++ +A ++ Q VGR++R + D G ++ D+R
Sbjct: 638 QELGGNPFMQITVPEASKKLIQSVGRLLRKERDSGRVVILDRR 680
>TIGR_CMR|VC_1855 [details] [associations]
symbol:VC_1855 "ATP-dependent helicase, putative"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004386
"helicase activity" evidence=ISS] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR001650 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 PROSITE:PS51194 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GenomeReviews:AE003852_GR GO:GO:0004003
GO:GO:0004386 KO:K03722 ProtClustDB:PRK11747 EMBL:AE004261
PIR:B82148 RefSeq:NP_231489.2 DNASU:2613609 GeneID:2613609
KEGG:vch:VC1855 PATRIC:20082752 OMA:CPYKLYQ Uniprot:Q9KQZ2
Length = 703
Score = 120 (47.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 39/140 (27%), Positives = 67/140 (47%)
Query: 190 CPYFLARHMVQFANVVVYSYQYLL-DPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
CP+ AR + A+V++ ++ ++ D + G + +E++ VFDEAH++ V E S
Sbjct: 213 CPFQKARSELDKADVIIANHSLVMADADLGGGVILPAPEETIYVFDEAHHLPTVAREHAS 272
Query: 249 VSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNP 308
+ TL+GA L ++NQ + +F A + RAE A++ +P +
Sbjct: 273 AAA---TLKGAASWLEKLNQSLSKFTALGDEK-RAERFAEEARTAIQYLIPTLNQ----- 323
Query: 309 ALPSDILKEAVPGNIRRAEH 328
LP + E I R EH
Sbjct: 324 -LPKQFMAEQFVEGIYRFEH 342
Score = 94 (38.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 25/103 (24%), Positives = 49/103 (47%)
Query: 581 LDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYL 640
L+ ++K + + +V F G +EG+D +I+ +PF S + A EY+
Sbjct: 580 LNKHKKLIEKQKTSVLFGT--GSFSEGLDLPGELLENLIITKIPFAVPTSPVEQAHAEYI 637
Query: 641 RDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKR 683
++ +A ++ Q VGR++R + D G ++ D+R
Sbjct: 638 QELGGNPFMQITVPEASKKLIQSVGRLLRKERDSGRVVILDRR 680
>UNIPROTKB|Q4JC68 [details] [associations]
symbol:Saci_0192 "ATP-dependent DNA helicase Saci_0192"
species:330779 "Sulfolobus acidocaldarius DSM 639" [GO:0032508 "DNA
duplex unwinding" evidence=IDA] [GO:0043139 "5'-3' DNA helicase
activity" evidence=IDA] [GO:0051539 "4 iron, 4 sulfur cluster
binding" evidence=IDA] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 GO:GO:0005524 GO:GO:0046872 GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0051539 GO:GO:0004003
EMBL:CP000077 GenomeReviews:CP000077_GR eggNOG:COG1199
GO:GO:0043139 KO:K10844 RefSeq:YP_254904.1 PDB:3CRV PDB:3CRW
PDBsum:3CRV PDBsum:3CRW ProteinModelPortal:Q4JC68 GeneID:3474005
KEGG:sai:Saci_0192 HOGENOM:HOG000271001 OMA:CPYEYAK
ProtClustDB:CLSK802665 BioCyc:SACI330779:GH9J-270-MONOMER
EvolutionaryTrace:Q4JC68 Uniprot:Q4JC68
Length = 551
Score = 105 (42.0 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 34/146 (23%), Positives = 68/146 (46%)
Query: 147 AENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVV 206
AE+ +I C++ E + ++ L+ G Q +CPY+ + + A+V+
Sbjct: 95 AESEDIP-CKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIA 153
Query: 207 YSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVC-IEALSVS-------VRRQTLEG 258
+Y Y + I ++ +E ++V DEAHN+D V +E S+S +++ E
Sbjct: 154 LTYPYFFIDRYREFIDIDL-REYMIVIDEAHNLDKVNELEERSLSEITIQMAIKQSKSEE 212
Query: 259 ATRNLSRINQEIERFKATDAGRLRAE 284
+ R LS++ ++ D ++ E
Sbjct: 213 SRRILSKLLNQLREVVLPDEKYIKVE 238
Score = 92 (37.4 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 70/288 (24%), Positives = 119/288 (41%)
Query: 407 VGTYTRGFSII-IEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPID 465
+G+ R FS++ I F +P L + + S + + D S+++ SGTL P +
Sbjct: 273 IGSILRFFSLLSIGSF---IPFSYSKRLVIKNPEISYYLNLLNDNELSIILMSGTLPPRE 329
Query: 466 LYPRLLNF-----HPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNY 520
++ + V R + ++ C + G D V++K+DMRSD + + Y
Sbjct: 330 YMEKVWGIKRNMLYLDVEREIQKRVSGSYECYI----GVD---VTSKYDMRSD-NMWKRY 381
Query: 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLA 580
L+++ ++ F SY MD +++ I K V E V + A
Sbjct: 382 ADYLLKIYFQAKANVLVVFPSYEIMDRVMS---------RISLPKYVESEDSSVEDLYSA 432
Query: 581 LDNYRKAC--DCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYT--LSKILLAR 636
+ K G+G +A G E + DR V++ G+P+ KIL R
Sbjct: 433 ISANNKVLIGSVGKG----KLAEG--IELRNNDRSLISDVVIVGIPYPPPDDYLKILAQR 486
Query: 637 LEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRY 684
+ L+ + +E F AL Q +GR IR D + DKR+
Sbjct: 487 VS-LKMNRENEEFLF-KIPALVTIKQAIGRAIRDVNDKCNVWLLDKRF 532
Score = 54 (24.1 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 40 LEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHE 79
L PTG+GKT L SL+ S + KP K+++ RT +E
Sbjct: 27 LNAPTGSGKT--LFSLLVSLEV-KP----KVLFVVRTHNE 59
>UNIPROTKB|J3KS24 [details] [associations]
symbol:BRIP1 "Fanconi anemia group J protein" species:9606
"Homo sapiens" [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR014013 PROSITE:PS51193
EMBL:AC002994 EMBL:AC005969 EMBL:AC060798 HGNC:HGNC:20473
GO:GO:0016817 Ensembl:ENST00000577913 Uniprot:J3KS24
Length = 69
Score = 132 (51.5 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53
+ + V +YFPY YP Q + M + R L++K HCLLE PTG+GK++ALL
Sbjct: 8 YTIGGVKIYFPY-KAYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALL 57
>TIGR_CMR|CPS_3886 [details] [associations]
symbol:CPS_3886 "ATP-dependent helicase" species:167879
"Colwellia psychrerythraea 34H" [GO:0004386 "helicase activity"
evidence=ISS] InterPro:IPR006555 InterPro:IPR010614
InterPro:IPR011545 InterPro:IPR014013 Pfam:PF00270 Pfam:PF06733
Pfam:PF13307 PROSITE:PS51193 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004003
InterPro:IPR014001 SMART:SM00487 eggNOG:COG1199 KO:K03722
OMA:KDTGFAE HOGENOM:HOG000242574 ProtClustDB:CLSK870213
RefSeq:YP_270548.1 ProteinModelPortal:Q47XC2 STRING:Q47XC2
GeneID:3520331 KEGG:cps:CPS_3886 PATRIC:21470671
BioCyc:CPSY167879:GI48-3903-MONOMER Uniprot:Q47XC2
Length = 647
Score = 128 (50.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 56/229 (24%), Positives = 102/229 (44%)
Query: 21 QYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEM 80
Q L++ A+D + ++E TGTGKT A L I +++ P+NP K++ T T +
Sbjct: 32 QTDMALDVAHAIDKQSSLIVEAGTGTGKTFAYL--IPAFLSLNPKNPKKIVVSTGTKNLQ 89
Query: 81 EKTL-AELKLLHNYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTA 139
E+ ++ L+ + L A++ A+ L R N N R+ A+ +DS +
Sbjct: 90 EQLFHKDIPLIK----KALASNAQV-AL-LKGRANYLCNYRL--AQYQDSRGQLDAQMLQ 141
Query: 140 SWVRALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFG-KQQGWCPYFLARHM 198
V+ N ++ + E + +++ P TL + A C AR
Sbjct: 142 DLVKVKTWAN-GTQSGDIGELVNVSEDSSIFPFVTSTLDNCLARDCPDYEACHLVRARQK 200
Query: 199 VQFANVVVYSYQ-YLLDPKVAGIISKEM-QKESVVVFDEAHNIDNVCIE 245
A+++V ++ + D + E+ K V++FDEAH I ++ E
Sbjct: 201 ASDADIIVVNHHLFFADMALKDTGFGELIPKAQVMIFDEAHQIGDIASE 249
Score = 68 (29.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 43/187 (22%), Positives = 70/187 (37%)
Query: 497 RGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSG 556
+ QL V +D A +L ++ F SY M ++ +
Sbjct: 442 QAQSQLVVPRYLPQANDKNRALKLAELAEPLIKASKGACFMLFTSYRVMHQV------AE 495
Query: 557 ILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGR 616
+L E + + L+ Q + L+ + + D AV + A EGID
Sbjct: 496 VLAESIDNPLL---VQGKMAKRKLLEQFVEQDD----AVLLATA--SFWEGIDVRGDKLT 546
Query: 617 LVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGM 676
VI+ +PF +L AR E +R A+ Q VGR+IR +D G+
Sbjct: 547 CVIIDKLPFASPDDPLLQARCEDVRRQGGEPFSQIQLPQAVIALKQGVGRLIRDVSDRGV 606
Query: 677 MIFADKR 683
++ D R
Sbjct: 607 LVICDDR 613
Score = 42 (19.8 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 18/58 (31%), Positives = 26/58 (44%)
Query: 281 LRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPG-----NIRRAEHFLHVL 333
L+ RL+ ++ RG L I D L N LK ++P +I +A FL L
Sbjct: 590 LKQGVGRLIRDVSDRGVLVICDDRLVNKPYGETFLK-SLPDMKRSRDINKAAKFLETL 646
>TIGR_CMR|SO_1819 [details] [associations]
symbol:SO_1819 "ATP-dependent helicase DinG" species:211586
"Shewanella oneidensis MR-1" [GO:0003678 "DNA helicase activity"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR001650 InterPro:IPR006555 InterPro:IPR014013
Pfam:PF13307 PROSITE:PS51193 PROSITE:PS51194 SMART:SM00491
GO:GO:0005524 GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0008026 HOGENOM:HOG000242573 KO:K03722 OMA:HCAGIRV
ProtClustDB:PRK11747 RefSeq:NP_717427.1 ProteinModelPortal:Q8EFZ5
GeneID:1169592 KEGG:son:SO_1819 PATRIC:23523261 Uniprot:Q8EFZ5
Length = 690
Score = 128 (50.1 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 39/129 (30%), Positives = 62/129 (48%)
Query: 560 EIMQHKLVF-IETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLV 618
E+++ KL I Q L+ ++ CD G ++ F G +EG+D Y +
Sbjct: 546 ELLEGKLALEILIQGNAPRQQLLETHKAKCDKGEPSILFGT--GSFSEGLDLPGDYLTNL 603
Query: 619 IMFGVPFQYTLSKILLARLEYLRDTFQIKEGD-FLTF---DALRQAAQCVGRVIRSKADY 674
I+ +PF S + A EY++ IK G+ FL DA R+ Q GR++R + DY
Sbjct: 604 IVTKLPFAVPTSPVEQAHAEYVK----IKGGNPFLQLTIPDASRKLIQSCGRLLRKEQDY 659
Query: 675 GMMIFADKR 683
G + D+R
Sbjct: 660 GRVTILDRR 668
Score = 69 (29.3 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 22/80 (27%), Positives = 39/80 (48%)
Query: 190 CPYFLARHMVQFANVVVYSYQYLL-DPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
CP+ AR V +V++ ++ L D ++ G + ++ V DEAH++ I A
Sbjct: 202 CPFHKAREDVDTWDVLIANHSLLFADLELGGGVILPNPEDVFYVIDEAHHLP---IVARD 258
Query: 249 VSVRRQTLEGATRNLSRINQ 268
S + TL GA L ++ +
Sbjct: 259 FSSAQATLRGAADWLEKVGK 278
Score = 37 (18.1 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 5/23 (21%), Positives = 15/23 (65%)
Query: 105 LAIGLSSRKNLCVNSRVLAAENR 127
+ + L+S+K +C+ + +A + +
Sbjct: 71 IPLALASKKKVCIATATVALQEQ 93
>TIGR_CMR|CPS_2272 [details] [associations]
symbol:CPS_2272 "ATP-dependent helicase DinG"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] InterPro:IPR001650 InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR014013 Pfam:PF06733 Pfam:PF13307
PROSITE:PS51193 PROSITE:PS51194 SMART:SM00491 GO:GO:0005524
GO:GO:0003677 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0004003
eggNOG:COG1199 HOGENOM:HOG000242573 KO:K03722 OMA:HCAGIRV
ProtClustDB:PRK11747 RefSeq:YP_268992.1 ProteinModelPortal:Q482M5
STRING:Q482M5 GeneID:3521323 KEGG:cps:CPS_2272 PATRIC:21467647
BioCyc:CPSY167879:GI48-2337-MONOMER Uniprot:Q482M5
Length = 712
Score = 110 (43.8 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 34/125 (27%), Positives = 63/125 (50%)
Query: 564 HKL-VFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFG 622
HKL + ++ + + +AL ++K CD + ++ F +EG+D Y +I+
Sbjct: 573 HKLEIMVQGELSRQQIIAL--HKKRCDDNKESIIFGTQ--SFSEGLDLPGDYLNNLIITK 628
Query: 623 VPFQYTLSKILLARLEYLRDTFQIKEGD-FLTF---DALRQAAQCVGRVIRSKADYGMMI 678
+PF S + A+ EY+ K G+ F+T D ++ Q GR++R++ D G++
Sbjct: 629 LPFSVPTSPVEQAQAEYVT----AKGGNPFMTLSVPDTSKKLVQACGRLLRNEMDEGVIT 684
Query: 679 FADKR 683
DKR
Sbjct: 685 LLDKR 689
Score = 80 (33.2 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 22/78 (28%), Positives = 43/78 (55%)
Query: 190 CPYFLARHMVQFANVVVYSYQYLL-DPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248
CP+ AR + A+V+V ++ LL D ++ G +++ + DEAH++ V + S
Sbjct: 206 CPFHKARETMDQAHVLVVNHSLLLADLELGGGKILSPPEDTFYIIDEAHHLPKVTRDFSS 265
Query: 249 VSVRRQTLEGATRNLSRI 266
S+ TL+G+ L+++
Sbjct: 266 ASI---TLKGSIEWLTKL 280
Score = 41 (19.5 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 40 LEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL-AELKLLHNY 93
+E TGTGK++A L++ + K+ T TV E+ + +L L Y
Sbjct: 54 IEAGTGTGKSLAYSLGAIPLALARDK---KVCISTATVALQEQLVDKDLPFLKKY 105
>TIGR_CMR|BA_1565 [details] [associations]
symbol:BA_1565 "DnaQ family exonuclease/DinG family
helicase, putative" species:198094 "Bacillus anthracis str. Ames"
[GO:0003678 "DNA helicase activity" evidence=ISS] [GO:0004527
"exonuclease activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR001650 InterPro:IPR006054 InterPro:IPR006055
InterPro:IPR006310 InterPro:IPR006555 InterPro:IPR006935
InterPro:IPR012337 InterPro:IPR014013 Pfam:PF04851 Pfam:PF13307
PROSITE:PS51193 PROSITE:PS51194 SMART:SM00479 SMART:SM00491
Pfam:PF00929 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
GO:GO:0005622 GO:GO:0006310 GO:GO:0004527 InterPro:IPR013520
SUPFAM:SSF53098 InterPro:IPR014001 SMART:SM00487 GO:GO:0008026
GO:GO:0003887 KO:K03722 TIGRFAMs:TIGR00573 RefSeq:NP_844015.1
RefSeq:YP_018187.1 RefSeq:YP_027721.1 ProteinModelPortal:Q81ST0
IntAct:Q81ST0 DNASU:1086736 EnsemblBacteria:EBBACT00000010766
EnsemblBacteria:EBBACT00000017129 EnsemblBacteria:EBBACT00000022124
GeneID:1086736 GeneID:2815613 GeneID:2849564 KEGG:ban:BA_1565
KEGG:bar:GBAA_1565 KEGG:bat:BAS1452 HOGENOM:HOG000041588
OMA:YLFAYAY ProtClustDB:PRK08074
BioCyc:BANT260799:GJAJ-1526-MONOMER
BioCyc:BANT261594:GJ7F-1589-MONOMER TIGRFAMs:TIGR01407
Uniprot:Q81ST0
Length = 934
Score = 120 (47.3 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 65/237 (27%), Positives = 101/237 (42%)
Query: 21 QYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEM 80
Q M E+ AL L+E TGTGKT+A L L + Y K E PV I T+TV
Sbjct: 263 QQIMMKEIYTALRDSRFSLIEAGTGTGKTLAYL-LPSIYFAKKKEEPV--IISTQTVQLQ 319
Query: 81 EKTLA-ELKLLHNYQTRHLGPAAKILAIGLSSRKN-LCVNSRVLAAENRD-SVDAACRK- 136
++ L E+ LL P + +A+ L RK+ LC++ A + + + D A K
Sbjct: 320 QQILEKEIPLLQKIM-----PFSFEIAL-LKGRKHYLCLHKFEYALQEEEKNYDMALTKA 373
Query: 137 RTASWV-RALAAENPNIETCEFFENYEKAASAAVLPPGVYTLQDLRAFGKQQGW---CPY 192
+ W+ + + + E + + V PG G Q W C Y
Sbjct: 374 KILVWLLQTETGDRDELNIPEGGKLLWNRICSDVHSPG----------GMQSNWFSRCFY 423
Query: 193 FLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESV--VVFDEAHNIDNVCIEAL 247
A++ FA++V+ ++ L S+E S ++FDEAH+I+ L
Sbjct: 424 QRAKNKALFADIVITNHALLFQD----FSSEEPLLASCEHIIFDEAHHIEEAASRTL 476
Score = 63 (27.2 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 606 EGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVG 665
EGID +++ +PF ++ A+ E+L++ + A+ + Q G
Sbjct: 820 EGIDIPGDALSCLVIVRLPFTPPYQPMIEAKGEWLKNQGEDVFAKLALPQAILRFKQGFG 879
Query: 666 RVIRSKADYGMMIFADKR 683
R+IR+ D G + D+R
Sbjct: 880 RLIRTSTDTGTVFVLDRR 897
>UNIPROTKB|Q606M5 [details] [associations]
symbol:MCA1991 "Putative ATP-dependent helicase"
species:243233 "Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR006555
InterPro:IPR010614 InterPro:IPR011545 InterPro:IPR014013
Pfam:PF00270 Pfam:PF06733 Pfam:PF13307 PROSITE:PS51193
SMART:SM00491 GO:GO:0005524 GO:GO:0003677 GO:GO:0004003
EMBL:AE017282 GenomeReviews:AE017282_GR InterPro:IPR014001
SMART:SM00487 KO:K03722 HOGENOM:HOG000242574 RefSeq:YP_114423.1
ProteinModelPortal:Q606M5 GeneID:3104260 KEGG:mca:MCA1991
PATRIC:22607828 OMA:QFGLHIT Uniprot:Q606M5
Length = 645
Score = 84 (34.6 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 63/215 (29%), Positives = 90/215 (41%)
Query: 190 CPYFLARHMVQFANVVVYSYQYL-LD--PKVAGIISKEMQKESVVVFDEAHNIDNVCIEA 246
CP AR Q A + V ++ L D K G + + V++ DEAH +
Sbjct: 184 CPVVQARKAAQEAQITVINHHLLWADWAVKTDGF-GELLPVADVIIVDEAHQFAETATQF 242
Query: 247 LSVSVR-RQTLEGATRNLSRINQEIERFK-ATDAGRLRAEYNRL-VEGLALR---GNLPI 300
L VS+ RQ E A L IER K A D G L L VE A+R G P
Sbjct: 243 LGVSLSSRQLAELADDTL------IERAKDAPDMGGLADAATLLKVELTAMRAALGEEPR 296
Query: 301 ADAWLSNPALPSDILKEAVPGNIRRAEHFLHVLRRLVQY--LRGRLETENVEKEGPVSFV 358
DAW A+ KE V + R E L L ++ +RG+ E+ K F+
Sbjct: 297 RDAW---HAVAG---KEEVNAGLGRMEEALLALAAQLKIAAVRGK-GLESCWKRCD-EFI 348
Query: 359 ASITAHAGID-QKTLRFCYERLHSLMLTLEITDTD 392
+ A D ++++R+ +E +H +L T D
Sbjct: 349 QRLEAFLAEDTEESVRW-FE-IHRRGFSLSRTPLD 381
Score = 81 (33.6 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 34/124 (27%), Positives = 54/124 (43%)
Query: 561 IMQHKLVF-IETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVI 619
I++ K F + Q T LD++R + G G + + EG+D V+
Sbjct: 489 ILEGKTEFPLFVQGSRPKTRLLDDFRAS---GNGLL---LGTASFWEGVDVRGEALSCVV 542
Query: 620 MFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIF 679
+ +PF ++ ARLE +R G F A+ Q GR+IR D G+++
Sbjct: 543 IDKLPFASPGDPVVSARLEAIRKRGHSPFGVFQLPAAVIALKQGAGRLIRDVDDRGVLVL 602
Query: 680 ADKR 683
AD R
Sbjct: 603 ADPR 606
Score = 53 (23.7 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 36 GHCLL-EMPTGTGKTIALL 53
G CL+ E TGTGKT A L
Sbjct: 41 GRCLIAEAGTGTGKTFAYL 59
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.138 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 724 724 0.00086 121 3 11 22 0.47 33
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 112
No. of states in DFA: 623 (66 KB)
Total size of DFA: 364 KB (2181 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 64.61u 0.11s 64.72t Elapsed: 00:00:03
Total cpu time: 64.65u 0.11s 64.76t Elapsed: 00:00:03
Start: Fri May 10 13:08:53 2013 End: Fri May 10 13:08:56 2013
WARNINGS ISSUED: 1