Query 004910
Match_columns 724
No_of_seqs 229 out of 1727
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 09:30:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a15_A XPD helicase, ATP-depen 100.0 5.1E-87 1.8E-91 766.4 41.5 585 14-702 2-600 (620)
2 3crv_A XPD/RAD3 related DNA he 100.0 9.2E-77 3.1E-81 677.2 41.8 530 13-704 1-544 (551)
3 2vl7_A XPD; helicase, unknown 100.0 5E-70 1.7E-74 619.2 40.4 517 12-693 4-531 (540)
4 1xti_A Probable ATP-dependent 99.8 1.5E-18 5.1E-23 188.8 28.6 76 12-92 26-101 (391)
5 3pey_A ATP-dependent RNA helic 99.8 3.3E-18 1.1E-22 186.1 27.8 77 12-91 23-99 (395)
6 1s2m_A Putative ATP-dependent 99.8 5.2E-18 1.8E-22 185.3 28.7 75 12-91 39-113 (400)
7 2db3_A ATP-dependent RNA helic 99.8 7.4E-18 2.5E-22 186.2 27.2 75 12-91 74-153 (434)
8 2i4i_A ATP-dependent RNA helic 99.8 1.1E-17 3.8E-22 183.7 28.2 127 532-703 276-412 (417)
9 1hv8_A Putative ATP-dependent 99.8 9.5E-18 3.2E-22 180.6 27.1 116 523-683 229-345 (367)
10 3sqw_A ATP-dependent RNA helic 99.8 2.1E-17 7.2E-22 189.5 31.1 78 11-91 38-119 (579)
11 2j0s_A ATP-dependent RNA helic 99.8 2.4E-17 8.4E-22 180.6 26.2 75 12-91 55-129 (410)
12 3i5x_A ATP-dependent RNA helic 99.8 9.5E-17 3.3E-21 183.6 31.2 79 11-92 89-171 (563)
13 3fht_A ATP-dependent RNA helic 99.8 7.2E-17 2.5E-21 176.7 26.2 78 11-91 42-119 (412)
14 3eiq_A Eukaryotic initiation f 99.7 8E-17 2.7E-21 176.6 23.2 76 11-91 57-132 (414)
15 2v1x_A ATP-dependent DNA helic 99.7 4.5E-16 1.6E-20 177.5 30.2 70 10-90 38-107 (591)
16 2z0m_A 337AA long hypothetical 99.7 1.5E-16 5.3E-21 169.0 23.3 70 11-91 11-80 (337)
17 1fuu_A Yeast initiation factor 99.7 1.1E-17 3.8E-22 182.1 13.2 75 12-91 39-113 (394)
18 1oyw_A RECQ helicase, ATP-depe 99.7 8.6E-16 2.9E-20 173.3 27.4 71 9-90 18-88 (523)
19 3oiy_A Reverse gyrase helicase 99.7 7.3E-16 2.5E-20 169.2 25.8 72 10-90 16-87 (414)
20 3fho_A ATP-dependent RNA helic 99.7 7.3E-17 2.5E-21 181.8 14.3 76 12-90 137-212 (508)
21 1wp9_A ATP-dependent RNA helic 99.7 1.5E-14 5.2E-19 161.2 28.4 68 16-91 9-76 (494)
22 2va8_A SSO2462, SKI2-type heli 99.6 1.3E-14 4.5E-19 170.5 26.2 73 12-90 26-98 (715)
23 2eyq_A TRCF, transcription-rep 99.6 1.4E-13 4.9E-18 167.9 29.8 77 9-90 597-675 (1151)
24 2p6r_A Afuhel308 helicase; pro 99.6 3.4E-14 1.2E-18 166.5 23.4 72 11-90 20-91 (702)
25 3l9o_A ATP-dependent RNA helic 99.6 1.2E-13 4.3E-18 167.5 26.8 75 7-90 176-250 (1108)
26 4a4z_A Antiviral helicase SKI2 99.6 4.1E-14 1.4E-18 170.2 21.9 75 7-90 31-105 (997)
27 2xgj_A ATP-dependent RNA helic 99.6 1.7E-13 5.7E-18 164.9 26.8 73 9-90 80-152 (1010)
28 2zj8_A DNA helicase, putative 99.6 5.2E-14 1.8E-18 165.4 20.9 73 12-90 19-91 (720)
29 3h1t_A Type I site-specific re 99.6 4E-13 1.4E-17 154.3 26.2 129 519-683 424-558 (590)
30 2oca_A DAR protein, ATP-depend 99.5 1.6E-13 5.4E-18 154.8 21.5 70 13-90 111-180 (510)
31 4f92_B U5 small nuclear ribonu 99.5 3.7E-13 1.3E-17 169.1 26.5 72 14-90 924-995 (1724)
32 1vec_A ATP-dependent RNA helic 99.5 2.3E-14 7.9E-19 141.2 12.2 76 11-91 20-95 (206)
33 3iuy_A Probable ATP-dependent 99.5 1.8E-14 6.2E-19 144.5 11.4 74 12-90 38-117 (228)
34 1qde_A EIF4A, translation init 99.5 1.7E-14 5.7E-19 144.3 11.1 76 11-91 31-106 (224)
35 3fe2_A Probable ATP-dependent 99.5 2.7E-14 9.2E-19 144.7 12.3 77 11-92 46-127 (242)
36 1gku_B Reverse gyrase, TOP-RG; 99.5 8.1E-14 2.8E-18 169.0 18.0 71 11-91 53-123 (1054)
37 3ber_A Probable ATP-dependent 99.5 5.2E-14 1.8E-18 143.2 13.1 76 11-91 60-135 (249)
38 2oxc_A Probable ATP-dependent 99.5 3.7E-14 1.3E-18 142.5 11.6 76 11-91 41-116 (230)
39 1wrb_A DJVLGB; RNA helicase, D 99.5 6.6E-14 2.3E-18 142.8 13.6 75 12-91 41-124 (253)
40 3dkp_A Probable ATP-dependent 99.5 1.6E-14 5.4E-19 146.6 8.8 75 12-91 47-122 (245)
41 1t6n_A Probable ATP-dependent 99.5 6.4E-14 2.2E-18 139.6 11.6 75 12-91 32-106 (220)
42 4f92_B U5 small nuclear ribonu 99.5 1.1E-12 3.6E-17 165.0 25.1 77 11-91 73-158 (1724)
43 1q0u_A Bstdead; DEAD protein, 99.5 4.1E-14 1.4E-18 141.0 9.6 77 11-92 21-97 (219)
44 2gxq_A Heat resistant RNA depe 99.5 1.4E-13 4.7E-18 135.7 12.8 75 11-90 18-95 (207)
45 2pl3_A Probable ATP-dependent 99.5 1E-13 3.5E-18 139.8 11.8 76 11-91 42-121 (236)
46 4ddu_A Reverse gyrase; topoiso 99.5 2.9E-12 1E-16 155.4 24.2 71 11-90 74-144 (1104)
47 3bor_A Human initiation factor 99.5 1.2E-13 4E-18 139.5 10.1 76 11-91 47-122 (237)
48 3ly5_A ATP-dependent RNA helic 99.5 2.2E-13 7.5E-18 139.7 11.7 75 12-91 72-150 (262)
49 2jlq_A Serine protease subunit 99.4 1.4E-12 4.8E-17 144.4 14.1 118 531-681 187-308 (451)
50 3fmo_B ATP-dependent RNA helic 99.4 1.1E-12 3.9E-17 137.0 9.6 77 12-91 110-186 (300)
51 3b6e_A Interferon-induced heli 99.3 5E-12 1.7E-16 125.1 11.0 70 16-90 33-106 (216)
52 3tbk_A RIG-I helicase domain; 99.3 1.1E-11 3.8E-16 140.8 12.8 73 13-91 2-76 (555)
53 2fsf_A Preprotein translocase 99.3 1E-10 3.6E-15 133.9 20.1 67 16-92 74-140 (853)
54 2v6i_A RNA helicase; membrane, 99.3 1.2E-10 4E-15 128.1 20.0 119 531-681 170-288 (431)
55 2whx_A Serine protease/ntpase/ 99.3 1.2E-11 4.2E-16 141.4 12.0 122 531-682 354-476 (618)
56 4a2p_A RIG-I, retinoic acid in 99.3 1.4E-11 5E-16 140.0 12.4 74 12-91 4-79 (556)
57 2ykg_A Probable ATP-dependent 99.3 2.1E-11 7E-16 142.9 13.8 77 10-91 7-85 (696)
58 1tf5_A Preprotein translocase 99.3 5.8E-10 2E-14 128.1 24.9 70 12-92 80-149 (844)
59 1nkt_A Preprotein translocase 99.3 2E-09 6.9E-14 123.5 29.1 70 12-92 108-177 (922)
60 4a2q_A RIG-I, retinoic acid in 99.2 2.3E-11 7.9E-16 144.4 11.9 75 12-91 244-320 (797)
61 1gm5_A RECG; helicase, replica 99.2 5.7E-11 2E-15 138.6 14.7 90 10-112 363-454 (780)
62 3fmp_B ATP-dependent RNA helic 99.2 1.3E-11 4.3E-16 138.1 7.4 77 12-91 110-186 (479)
63 4a2w_A RIG-I, retinoic acid in 99.2 4.8E-11 1.6E-15 143.5 10.8 73 14-91 246-320 (936)
64 2xau_A PRE-mRNA-splicing facto 99.2 7.7E-10 2.6E-14 129.8 20.3 144 515-680 285-439 (773)
65 1rif_A DAR protein, DNA helica 99.1 2.1E-10 7.2E-15 118.7 12.1 68 16-90 113-180 (282)
66 4gl2_A Interferon-induced heli 99.1 4.8E-11 1.7E-15 139.8 6.8 73 13-91 5-81 (699)
67 2fz4_A DNA repair protein RAD2 99.1 3.8E-10 1.3E-14 113.6 11.2 66 12-89 90-155 (237)
68 2fwr_A DNA repair protein RAD2 99.0 4.5E-10 1.5E-14 125.1 10.6 68 10-89 88-155 (472)
69 3rc3_A ATP-dependent RNA helic 98.9 1.6E-08 5.5E-13 116.2 18.7 122 532-683 320-444 (677)
70 3jux_A Protein translocase sub 98.9 8E-07 2.7E-11 100.1 31.2 66 18-93 77-142 (822)
71 1z63_A Helicase of the SNF2/RA 98.9 8.1E-09 2.8E-13 115.8 12.9 72 16-90 37-108 (500)
72 2w00_A HSDR, R.ECOR124I; ATP-b 98.9 4.7E-09 1.6E-13 125.7 11.5 72 17-90 272-353 (1038)
73 2ipc_A Preprotein translocase 98.6 7.7E-08 2.6E-12 110.2 11.1 70 12-92 76-145 (997)
74 3mwy_W Chromo domain-containin 98.6 9.1E-08 3.1E-12 113.3 11.9 74 16-91 236-309 (800)
75 3dmq_A RNA polymerase-associat 98.6 4E-08 1.4E-12 118.3 8.8 100 530-674 501-604 (968)
76 3llm_A ATP-dependent RNA helic 98.6 6.1E-08 2.1E-12 97.2 8.1 69 17-89 62-131 (235)
77 1z3i_X Similar to RAD54-like; 98.5 4.8E-07 1.6E-11 104.4 12.4 74 16-91 55-137 (644)
78 4b3f_X DNA-binding protein smu 98.2 8.2E-06 2.8E-10 94.2 13.2 67 16-89 189-255 (646)
79 3o8b_A HCV NS3 protease/helica 98.1 1.4E-06 4.7E-11 99.2 4.9 54 29-89 226-279 (666)
80 2hjv_A ATP-dependent RNA helic 98.0 6.4E-05 2.2E-09 70.3 12.9 107 531-682 34-141 (163)
81 2z83_A Helicase/nucleoside tri 98.0 2.4E-06 8.1E-11 94.5 2.7 122 531-682 189-312 (459)
82 2p6n_A ATP-dependent RNA helic 97.9 4.4E-05 1.5E-09 73.6 11.2 115 523-682 45-160 (191)
83 2wv9_A Flavivirin protease NS2 97.9 9.4E-07 3.2E-11 101.7 -1.9 119 531-680 409-529 (673)
84 1fuk_A Eukaryotic initiation f 97.9 7.7E-05 2.6E-09 69.9 11.1 106 531-681 29-135 (165)
85 1yks_A Genome polyprotein [con 97.9 4.5E-06 1.5E-10 91.7 2.7 119 531-680 176-295 (440)
86 2gk6_A Regulator of nonsense t 97.8 9.1E-05 3.1E-09 84.9 13.6 67 16-89 180-246 (624)
87 2rb4_A ATP-dependent RNA helic 97.8 0.00021 7.2E-09 67.6 13.4 119 523-681 24-145 (175)
88 2jgn_A DBX, DDX3, ATP-dependen 97.8 0.00013 4.5E-09 69.8 11.8 106 532-682 46-152 (185)
89 1t5i_A C_terminal domain of A 97.7 0.00016 5.3E-09 68.4 10.8 107 531-682 30-137 (172)
90 3eaq_A Heat resistant RNA depe 97.7 0.00035 1.2E-08 68.4 12.7 107 531-682 30-137 (212)
91 2wjy_A Regulator of nonsense t 97.6 0.00038 1.3E-08 81.6 13.6 67 16-89 356-422 (800)
92 2xzl_A ATP-dependent helicase 97.5 0.00037 1.3E-08 81.8 11.6 67 16-89 360-426 (802)
93 2yjt_D ATP-dependent RNA helic 96.4 3.2E-05 1.1E-09 72.9 0.0 107 531-682 29-136 (170)
94 3i32_A Heat resistant RNA depe 97.1 0.0025 8.6E-08 65.7 12.0 107 531-682 27-134 (300)
95 1yks_A Genome polyprotein [con 97.1 0.0015 5.3E-08 71.4 10.8 56 31-89 4-59 (440)
96 3fmp_B ATP-dependent RNA helic 97.1 9.5E-05 3.2E-09 82.0 0.6 114 531-683 332-446 (479)
97 2wv9_A Flavivirin protease NS2 97.0 0.0015 5E-08 75.2 9.7 71 16-89 215-292 (673)
98 3upu_A ATP-dependent DNA helic 96.9 0.003 1E-07 69.5 10.5 71 11-84 20-91 (459)
99 4gl2_A Interferon-induced heli 96.8 0.0022 7.5E-08 74.5 8.9 85 532-625 400-493 (699)
100 2fwr_A DNA repair protein RAD2 96.7 0.0031 1.1E-07 69.5 8.5 94 531-673 348-441 (472)
101 2d7d_A Uvrabc system protein B 96.6 0.012 4.2E-07 67.5 13.5 76 8-91 5-81 (661)
102 2z83_A Helicase/nucleoside tri 96.5 0.0028 9.6E-08 69.7 6.5 57 29-88 15-71 (459)
103 1c4o_A DNA nucleotide excision 96.4 0.015 5.1E-07 66.9 12.2 71 13-91 6-77 (664)
104 3tbk_A RIG-I helicase domain; 96.3 0.01 3.5E-07 66.5 9.8 99 518-626 374-482 (555)
105 1w36_D RECD, exodeoxyribonucle 96.3 0.0086 3E-07 68.1 9.1 67 18-90 151-219 (608)
106 4a2p_A RIG-I, retinoic acid in 96.3 0.0073 2.5E-07 67.8 8.4 98 518-625 375-482 (556)
107 1z63_A Helicase of the SNF2/RA 96.0 0.037 1.3E-06 61.3 12.5 115 519-676 329-444 (500)
108 4a2w_A RIG-I, retinoic acid in 96.0 0.019 6.4E-07 68.9 10.5 98 518-625 616-723 (936)
109 1z5z_A Helicase of the SNF2/RA 95.9 0.032 1.1E-06 56.5 10.3 93 519-626 100-195 (271)
110 1c4o_A DNA nucleotide excision 95.8 0.022 7.6E-07 65.4 9.7 79 531-624 438-517 (664)
111 2ykg_A Probable ATP-dependent 95.7 0.025 8.4E-07 65.6 9.5 98 518-625 383-490 (696)
112 4a2q_A RIG-I, retinoic acid in 95.4 0.032 1.1E-06 65.8 9.4 101 518-625 616-723 (797)
113 3mwy_W Chromo domain-containin 95.4 0.045 1.5E-06 64.5 10.6 104 530-677 570-676 (800)
114 3dmq_A RNA polymerase-associat 95.4 0.044 1.5E-06 65.9 10.6 72 13-90 151-222 (968)
115 1z3i_X Similar to RAD54-like; 95.3 0.1 3.5E-06 59.7 13.1 80 531-625 415-498 (644)
116 1gm5_A RECG; helicase, replica 95.2 0.029 1E-06 65.4 8.0 120 520-681 567-695 (780)
117 3lfu_A DNA helicase II; SF1 he 95.0 0.041 1.4E-06 63.1 8.3 68 16-91 9-78 (647)
118 2d7d_A Uvrabc system protein B 94.2 0.13 4.3E-06 59.1 9.7 80 531-625 444-524 (661)
119 3e1s_A Exodeoxyribonuclease V, 93.3 0.16 5.6E-06 57.0 8.6 64 13-85 187-250 (574)
120 1uaa_A REP helicase, protein ( 93.3 0.12 4.1E-06 59.6 7.6 67 17-90 3-70 (673)
121 2w58_A DNAI, primosome compone 93.0 0.25 8.6E-06 47.0 8.3 34 19-52 32-71 (202)
122 3o8b_A HCV NS3 protease/helica 92.9 0.37 1.3E-05 54.7 10.7 116 531-683 395-514 (666)
123 1pjr_A PCRA; DNA repair, DNA r 92.8 0.21 7.1E-06 58.1 8.6 68 16-91 11-80 (724)
124 3ec2_A DNA replication protein 92.3 0.15 5.1E-06 47.7 5.5 35 18-52 16-55 (180)
125 2o0j_A Terminase, DNA packagin 92.2 0.47 1.6E-05 50.2 9.7 74 12-92 160-233 (385)
126 2w00_A HSDR, R.ECOR124I; ATP-b 91.7 0.9 3.1E-05 54.5 12.4 61 579-678 640-703 (1038)
127 3cpe_A Terminase, DNA packagin 91.6 0.55 1.9E-05 53.1 10.0 73 12-91 160-232 (592)
128 3n70_A Transport activator; si 91.3 0.14 4.8E-06 46.1 3.9 29 23-51 12-40 (145)
129 2r44_A Uncharacterized protein 90.6 0.13 4.5E-06 53.4 3.5 35 18-52 29-63 (331)
130 3u4q_A ATP-dependent helicase/ 90.6 0.34 1.2E-05 59.7 7.6 65 17-89 11-79 (1232)
131 3co5_A Putative two-component 90.6 0.24 8.1E-06 44.5 4.7 28 24-51 16-43 (143)
132 3nbx_X ATPase RAVA; AAA+ ATPas 90.3 0.15 5.3E-06 56.1 3.8 33 19-51 25-57 (500)
133 2qgz_A Helicase loader, putati 89.3 0.9 3.1E-05 46.6 8.4 34 19-52 131-169 (308)
134 1a5t_A Delta prime, HOLB; zinc 88.2 0.5 1.7E-05 49.1 5.7 37 17-53 3-42 (334)
135 1ofh_A ATP-dependent HSL prote 87.3 0.37 1.3E-05 49.1 4.0 34 19-52 18-67 (310)
136 3hws_A ATP-dependent CLP prote 87.2 0.36 1.2E-05 50.8 3.9 33 20-52 19-68 (363)
137 1jbk_A CLPB protein; beta barr 86.9 0.37 1.3E-05 44.8 3.4 34 19-52 25-60 (195)
138 1njg_A DNA polymerase III subu 86.4 0.44 1.5E-05 46.1 3.8 34 19-52 26-62 (250)
139 2chg_A Replication factor C sm 86.1 0.51 1.7E-05 45.0 4.0 33 20-52 21-55 (226)
140 3te6_A Regulatory protein SIR3 86.0 0.49 1.7E-05 48.7 4.0 36 18-53 25-63 (318)
141 2b8t_A Thymidine kinase; deoxy 85.9 0.66 2.3E-05 45.1 4.7 41 33-77 10-50 (223)
142 2p65_A Hypothetical protein PF 85.9 0.39 1.3E-05 44.5 2.9 35 19-53 25-61 (187)
143 1iqp_A RFCS; clamp loader, ext 85.2 0.52 1.8E-05 48.4 3.8 35 19-53 28-64 (327)
144 2bjv_A PSP operon transcriptio 85.0 0.65 2.2E-05 46.3 4.3 30 22-51 16-45 (265)
145 4fcw_A Chaperone protein CLPB; 84.9 0.4 1.4E-05 49.0 2.7 35 19-53 20-65 (311)
146 3bos_A Putative DNA replicatio 84.4 2.4 8.1E-05 40.9 8.1 33 20-52 35-69 (242)
147 1sxj_C Activator 1 40 kDa subu 83.4 0.9 3.1E-05 47.2 4.7 35 20-54 29-65 (340)
148 1l8q_A Chromosomal replication 82.3 3.8 0.00013 42.0 8.9 64 9-76 5-74 (324)
149 3pfi_A Holliday junction ATP-d 82.2 0.72 2.5E-05 47.7 3.4 35 19-53 32-73 (338)
150 3syl_A Protein CBBX; photosynt 80.9 2.3 7.8E-05 43.1 6.6 18 36-53 68-85 (309)
151 1sxj_D Activator 1 41 kDa subu 80.7 0.57 2E-05 48.7 2.0 35 19-53 40-76 (353)
152 2qby_B CDC6 homolog 3, cell di 80.4 3.6 0.00012 43.1 8.1 34 20-53 24-63 (384)
153 1ojl_A Transcriptional regulat 80.4 1.1 3.9E-05 45.7 4.0 29 23-51 13-41 (304)
154 3b9p_A CG5977-PA, isoform A; A 80.1 0.93 3.2E-05 45.9 3.2 18 35-52 54-71 (297)
155 3h4m_A Proteasome-activating n 79.7 0.81 2.8E-05 46.0 2.6 18 35-52 51-68 (285)
156 1xx6_A Thymidine kinase; NESG, 79.3 1.7 5.8E-05 41.1 4.5 39 34-76 7-45 (191)
157 1g8p_A Magnesium-chelatase 38 79.3 0.76 2.6E-05 47.7 2.3 40 12-52 21-62 (350)
158 3uk6_A RUVB-like 2; hexameric 78.8 2.3 7.8E-05 44.4 5.9 35 19-53 50-88 (368)
159 3pvs_A Replication-associated 78.6 1.1 3.7E-05 48.7 3.3 36 18-53 28-68 (447)
160 2zts_A Putative uncharacterize 78.3 1.3 4.4E-05 43.3 3.5 52 32-87 27-78 (251)
161 1um8_A ATP-dependent CLP prote 78.1 1.4 4.6E-05 46.5 3.9 18 35-52 72-89 (376)
162 1jr3_A DNA polymerase III subu 78.1 1.7 5.8E-05 45.4 4.7 35 19-53 19-56 (373)
163 1hqc_A RUVB; extended AAA-ATPa 77.3 1.2 4.1E-05 45.6 3.1 33 20-52 16-55 (324)
164 3pxi_A Negative regulator of g 77.0 2.7 9.3E-05 48.9 6.3 35 19-53 494-539 (758)
165 2chq_A Replication factor C sm 76.4 1.2 4.1E-05 45.3 2.8 34 20-53 21-56 (319)
166 1lv7_A FTSH; alpha/beta domain 75.8 2.3 7.9E-05 41.9 4.6 17 36-52 46-62 (257)
167 3cf0_A Transitional endoplasmi 75.5 1.8 6E-05 44.1 3.8 18 35-52 49-66 (301)
168 3pxg_A Negative regulator of g 75.5 1.4 4.7E-05 48.2 3.1 35 19-53 183-219 (468)
169 2qz4_A Paraplegin; AAA+, SPG7, 75.5 2.9 9.8E-05 41.2 5.2 17 36-52 40-56 (262)
170 2dr3_A UPF0273 protein PH0284; 75.3 2.9 9.8E-05 40.6 5.1 51 32-87 20-70 (247)
171 2orw_A Thymidine kinase; TMTK, 75.2 3.2 0.00011 38.8 5.2 39 35-77 3-41 (184)
172 1in4_A RUVB, holliday junction 75.1 1.6 5.6E-05 45.2 3.4 32 20-51 29-67 (334)
173 3d8b_A Fidgetin-like protein 1 75.0 1.6 5.3E-05 45.8 3.2 33 20-52 88-134 (357)
174 3k1j_A LON protease, ATP-depen 74.3 2.3 7.9E-05 48.0 4.7 35 19-53 44-78 (604)
175 3bh0_A DNAB-like replicative h 74.3 2.3 7.7E-05 43.7 4.2 54 27-85 60-113 (315)
176 3vkw_A Replicase large subunit 74.3 2.5 8.6E-05 45.4 4.6 44 36-88 162-205 (446)
177 2qen_A Walker-type ATPase; unk 73.8 1.8 6.1E-05 44.6 3.3 32 18-52 17-48 (350)
178 2c9o_A RUVB-like 1; hexameric 73.7 3.7 0.00012 44.5 5.9 34 20-53 41-81 (456)
179 3vfd_A Spastin; ATPase, microt 73.1 1.5 5.2E-05 46.4 2.6 34 19-52 118-165 (389)
180 2gno_A DNA polymerase III, gam 73.1 2.5 8.7E-05 43.1 4.2 35 20-54 1-37 (305)
181 2gza_A Type IV secretion syste 73.1 3.6 0.00012 43.1 5.5 25 26-50 166-190 (361)
182 1g41_A Heat shock protein HSLU 73.0 1.9 6.6E-05 46.4 3.4 33 20-52 19-67 (444)
183 3bgw_A DNAB-like replicative h 72.6 2.4 8.2E-05 45.8 4.1 45 28-76 190-234 (444)
184 1fnn_A CDC6P, cell division co 72.4 9.9 0.00034 39.5 8.9 35 19-53 20-62 (389)
185 3eie_A Vacuolar protein sortin 72.2 1.7 5.9E-05 44.7 2.7 34 19-52 21-68 (322)
186 1r6b_X CLPA protein; AAA+, N-t 71.7 1.6 5.4E-05 50.9 2.5 34 20-53 462-506 (758)
187 4a1f_A DNAB helicase, replicat 71.6 2.8 9.5E-05 43.4 4.1 47 26-76 37-83 (338)
188 1sxj_A Activator 1 95 kDa subu 71.5 2.8 9.7E-05 46.2 4.5 34 20-53 43-95 (516)
189 2z4s_A Chromosomal replication 70.9 9.3 0.00032 41.1 8.3 17 36-52 131-147 (440)
190 2v1u_A Cell division control p 70.9 1.5 5.2E-05 45.9 2.0 34 19-52 22-61 (387)
191 2q6t_A DNAB replication FORK h 70.7 2.7 9.2E-05 45.4 3.9 47 26-75 191-237 (444)
192 1sxj_B Activator 1 37 kDa subu 70.5 3 0.0001 42.4 4.1 34 20-53 25-60 (323)
193 2oap_1 GSPE-2, type II secreti 70.4 2.9 9.8E-05 46.1 4.1 29 23-51 248-276 (511)
194 2r6a_A DNAB helicase, replicat 69.9 3 0.0001 45.1 4.2 48 26-76 194-241 (454)
195 1tue_A Replication protein E1; 69.7 4.7 0.00016 38.5 4.8 29 25-53 45-76 (212)
196 2qp9_X Vacuolar protein sortin 69.0 2 6.9E-05 44.9 2.4 17 36-52 85-101 (355)
197 3u61_B DNA polymerase accessor 68.9 3.3 0.00011 42.4 4.0 35 19-53 29-66 (324)
198 1xwi_A SKD1 protein; VPS4B, AA 68.7 2.6 9E-05 43.3 3.2 17 36-52 46-62 (322)
199 2r62_A Cell division protease 68.5 1.3 4.5E-05 44.0 0.8 17 36-52 45-61 (268)
200 3f9v_A Minichromosome maintena 68.4 1.5 5E-05 49.5 1.2 32 20-51 299-343 (595)
201 3pxi_A Negative regulator of g 68.2 2.4 8.3E-05 49.3 3.1 35 19-53 183-219 (758)
202 1qvr_A CLPB protein; coiled co 66.8 2.2 7.5E-05 50.4 2.4 33 20-52 562-605 (854)
203 2j9r_A Thymidine kinase; TK1, 66.7 5.9 0.0002 38.0 4.9 39 35-77 28-66 (214)
204 3t15_A Ribulose bisphosphate c 66.7 4.2 0.00014 41.1 4.2 16 36-51 37-52 (293)
205 1d2n_A N-ethylmaleimide-sensit 66.5 5.2 0.00018 39.7 4.8 18 36-53 65-82 (272)
206 4b4t_M 26S protease regulatory 66.3 3 0.0001 44.7 3.1 21 36-58 216-236 (434)
207 1e9r_A Conjugal transfer prote 65.8 5.4 0.00018 42.8 5.1 39 35-79 53-93 (437)
208 2pt7_A CAG-ALFA; ATPase, prote 65.6 4.3 0.00015 41.9 4.1 27 24-50 160-186 (330)
209 1g5t_A COB(I)alamin adenosyltr 65.4 5.9 0.0002 37.4 4.6 40 31-74 24-63 (196)
210 4b4t_J 26S protease regulatory 65.3 3.5 0.00012 43.7 3.3 21 36-58 183-203 (405)
211 2qby_A CDC6 homolog 1, cell di 65.0 7.2 0.00025 40.5 5.8 35 19-53 23-63 (386)
212 1cr0_A DNA primase/helicase; R 64.8 4.4 0.00015 40.8 3.9 48 25-75 25-72 (296)
213 2kjq_A DNAA-related protein; s 64.7 5.8 0.0002 35.6 4.2 18 34-51 35-52 (149)
214 2zan_A Vacuolar protein sortin 64.5 3.4 0.00012 44.6 3.2 34 19-52 137-184 (444)
215 1q57_A DNA primase/helicase; d 64.5 3.2 0.00011 45.7 2.9 45 28-75 235-279 (503)
216 3hu3_A Transitional endoplasmi 63.9 3.1 0.00011 45.5 2.7 17 36-52 239-255 (489)
217 4b4t_K 26S protease regulatory 63.9 3.5 0.00012 44.2 3.0 22 36-59 207-228 (428)
218 1p9r_A General secretion pathw 63.3 3.6 0.00012 44.0 3.0 32 18-51 152-183 (418)
219 4b4t_L 26S protease subunit RP 63.1 3.8 0.00013 44.0 3.1 22 36-59 216-237 (437)
220 1u0j_A DNA replication protein 63.0 7.5 0.00025 38.7 5.0 17 37-53 106-122 (267)
221 2ius_A DNA translocase FTSK; n 62.8 8.4 0.00029 42.2 5.9 44 34-77 166-209 (512)
222 3b85_A Phosphate starvation-in 62.7 5.6 0.00019 38.0 4.0 34 14-51 5-38 (208)
223 2w0m_A SSO2452; RECA, SSPF, un 62.6 5.7 0.0002 37.9 4.1 40 31-74 19-58 (235)
224 1w5s_A Origin recognition comp 62.4 3.4 0.00012 43.7 2.6 35 18-52 27-69 (412)
225 4akg_A Glutathione S-transfera 61.9 6.4 0.00022 51.9 5.4 36 17-52 1249-1284(2695)
226 1w36_B RECB, exodeoxyribonucle 61.7 10 0.00035 46.3 7.0 50 36-86 17-75 (1180)
227 2cvh_A DNA repair and recombin 61.0 3.4 0.00012 39.3 2.1 24 31-54 16-39 (220)
228 1sxj_E Activator 1 40 kDa subu 60.4 3.2 0.00011 43.0 1.9 34 20-53 18-54 (354)
229 2zpa_A Uncharacterized protein 60.3 5.2 0.00018 45.3 3.7 59 16-83 175-233 (671)
230 1kgd_A CASK, peripheral plasma 59.7 3.6 0.00012 38.1 2.0 18 34-51 4-21 (180)
231 1ixz_A ATP-dependent metallopr 59.4 9.3 0.00032 37.3 5.1 15 37-51 51-65 (254)
232 4b4t_I 26S protease regulatory 59.3 4.8 0.00017 42.9 3.0 21 36-58 217-237 (437)
233 1w4r_A Thymidine kinase; type 59.3 8.7 0.0003 36.2 4.5 38 35-76 20-57 (195)
234 2r8r_A Sensor protein; KDPD, P 59.1 10 0.00034 36.7 5.0 36 37-76 8-44 (228)
235 4b4t_H 26S protease regulatory 58.9 4.3 0.00015 43.7 2.6 21 36-58 244-264 (467)
236 2px0_A Flagellar biosynthesis 58.8 9.6 0.00033 38.6 5.1 37 35-74 105-141 (296)
237 2bwj_A Adenylate kinase 5; pho 58.4 4.3 0.00015 37.9 2.3 22 30-51 7-28 (199)
238 3ney_A 55 kDa erythrocyte memb 57.7 4.1 0.00014 38.6 2.0 17 34-50 18-34 (197)
239 3tau_A Guanylate kinase, GMP k 57.6 4.1 0.00014 38.8 2.0 18 34-51 7-24 (208)
240 3vkg_A Dynein heavy chain, cyt 56.2 8.7 0.0003 51.3 5.2 35 17-51 1286-1320(3245)
241 1ry6_A Internal kinesin; kines 56.2 14 0.00049 38.3 6.0 36 18-53 61-103 (360)
242 2qor_A Guanylate kinase; phosp 55.8 3.5 0.00012 39.0 1.2 19 32-50 9-27 (204)
243 1n0w_A DNA repair protein RAD5 55.7 9.3 0.00032 36.8 4.3 24 32-55 21-44 (243)
244 2ce7_A Cell division protein F 55.6 10 0.00035 41.2 4.9 17 36-52 50-66 (476)
245 2eyu_A Twitching motility prot 55.6 3.4 0.00012 41.1 1.1 25 24-50 16-40 (261)
246 1nlf_A Regulatory protein REPA 55.6 20 0.0007 35.5 7.0 26 32-57 27-52 (279)
247 3tr0_A Guanylate kinase, GMP k 55.1 4.2 0.00014 38.2 1.6 19 33-51 5-23 (205)
248 1iy2_A ATP-dependent metallopr 55.0 12 0.00042 37.1 5.1 33 19-51 46-89 (278)
249 2r2a_A Uncharacterized protein 54.6 9 0.00031 36.2 3.8 18 37-54 7-24 (199)
250 2v9p_A Replication protein E1; 54.4 2.8 9.6E-05 42.7 0.2 27 24-50 115-141 (305)
251 1lvg_A Guanylate kinase, GMP k 54.2 5.2 0.00018 37.7 2.1 17 34-50 3-19 (198)
252 2iut_A DNA translocase FTSK; n 54.1 14 0.0005 40.8 5.8 43 35-77 214-256 (574)
253 4akg_A Glutathione S-transfera 53.7 20 0.00069 47.3 8.0 37 18-54 906-942 (2695)
254 3vaa_A Shikimate kinase, SK; s 53.7 5.2 0.00018 37.6 2.0 33 19-51 8-41 (199)
255 1u94_A RECA protein, recombina 53.7 9.7 0.00033 39.6 4.2 42 33-78 61-102 (356)
256 3a8t_A Adenylate isopentenyltr 53.7 6.3 0.00021 40.7 2.7 33 36-76 41-73 (339)
257 3hjh_A Transcription-repair-co 53.5 18 0.00062 39.3 6.5 50 34-90 13-62 (483)
258 3exa_A TRNA delta(2)-isopenten 53.4 6.4 0.00022 40.2 2.7 19 35-53 3-21 (322)
259 2fna_A Conserved hypothetical 53.2 3.3 0.00011 42.6 0.5 30 18-52 18-47 (357)
260 2z43_A DNA repair and recombin 53.2 13 0.00043 38.1 5.0 24 34-57 106-129 (324)
261 2j41_A Guanylate kinase; GMP, 52.9 4.8 0.00017 37.8 1.6 18 33-50 4-21 (207)
262 3nwj_A ATSK2; P loop, shikimat 52.7 6.4 0.00022 38.8 2.5 30 22-51 32-64 (250)
263 1ex7_A Guanylate kinase; subst 52.7 5.8 0.0002 37.2 2.1 15 36-50 2-16 (186)
264 3lw7_A Adenylate kinase relate 52.5 5.5 0.00019 36.0 1.9 16 36-51 2-17 (179)
265 2i1q_A DNA repair and recombin 52.4 9.6 0.00033 38.9 3.9 23 35-57 98-120 (322)
266 1kht_A Adenylate kinase; phosp 51.9 5.8 0.0002 36.6 2.0 17 35-51 3-19 (192)
267 1r6b_X CLPA protein; AAA+, N-t 51.9 7.7 0.00026 45.0 3.4 35 19-53 189-225 (758)
268 2qmh_A HPR kinase/phosphorylas 51.5 6.2 0.00021 37.4 2.1 17 35-51 34-50 (205)
269 2c95_A Adenylate kinase 1; tra 51.0 7.3 0.00025 36.1 2.6 20 32-51 6-25 (196)
270 1z6g_A Guanylate kinase; struc 50.3 6.7 0.00023 37.6 2.2 24 27-50 15-38 (218)
271 1v5w_A DMC1, meiotic recombina 49.6 14 0.00047 38.2 4.6 24 34-57 121-144 (343)
272 3u4q_B ATP-dependent helicase/ 49.5 14 0.00047 45.2 5.2 40 38-78 4-43 (1166)
273 1xp8_A RECA protein, recombina 49.3 11 0.00038 39.3 3.9 40 34-77 73-112 (366)
274 3trf_A Shikimate kinase, SK; a 49.3 6.9 0.00024 36.0 2.0 17 35-51 5-21 (185)
275 2orv_A Thymidine kinase; TP4A 49.1 18 0.0006 35.1 4.9 40 34-77 18-57 (234)
276 2zr9_A Protein RECA, recombina 48.8 16 0.00056 37.8 5.0 42 32-77 58-99 (349)
277 1qvr_A CLPB protein; coiled co 48.4 8.9 0.0003 45.1 3.3 35 19-53 173-209 (854)
278 3hr8_A Protein RECA; alpha and 48.2 18 0.00062 37.5 5.2 42 34-79 60-101 (356)
279 3kb2_A SPBC2 prophage-derived 48.0 7.2 0.00024 35.2 1.9 15 37-51 3-17 (173)
280 3dm5_A SRP54, signal recogniti 47.4 33 0.0011 36.7 7.3 37 36-76 101-138 (443)
281 2dhr_A FTSH; AAA+ protein, hex 47.2 17 0.0006 39.6 5.1 34 19-52 37-81 (499)
282 2ipc_A Preprotein translocase 47.1 1.4E+02 0.0047 35.0 12.5 95 442-553 369-464 (997)
283 3e2i_A Thymidine kinase; Zn-bi 46.9 18 0.00061 34.7 4.5 41 33-77 26-66 (219)
284 2v54_A DTMP kinase, thymidylat 46.3 7.9 0.00027 36.2 2.0 18 34-51 3-20 (204)
285 3foz_A TRNA delta(2)-isopenten 45.9 11 0.00038 38.3 3.0 17 36-52 11-27 (316)
286 3tlx_A Adenylate kinase 2; str 45.9 9 0.00031 37.4 2.4 16 36-51 30-45 (243)
287 3cm0_A Adenylate kinase; ATP-b 45.8 6.2 0.00021 36.4 1.1 18 34-51 3-20 (186)
288 4ag6_A VIRB4 ATPase, type IV s 45.8 21 0.00072 37.4 5.5 41 34-78 34-74 (392)
289 1zd8_A GTP:AMP phosphotransfer 45.3 7.8 0.00027 37.2 1.8 18 34-51 6-23 (227)
290 3ice_A Transcription terminati 45.3 16 0.00055 38.4 4.2 48 5-52 136-191 (422)
291 3iij_A Coilin-interacting nucl 44.9 11 0.00037 34.5 2.7 18 34-51 10-27 (180)
292 3a00_A Guanylate kinase, GMP k 44.7 9.5 0.00032 35.3 2.2 16 35-50 1-16 (186)
293 1s96_A Guanylate kinase, GMP k 44.6 8.7 0.0003 36.9 2.0 20 31-50 12-31 (219)
294 3io5_A Recombination and repai 44.6 26 0.00088 35.8 5.5 42 37-80 30-71 (333)
295 3jvv_A Twitching mobility prot 44.4 7.3 0.00025 40.6 1.5 19 33-51 121-139 (356)
296 3dc4_A Kinesin-like protein NO 44.3 24 0.00083 36.4 5.4 36 17-52 71-112 (344)
297 1f2t_A RAD50 ABC-ATPase; DNA d 44.2 13 0.00045 33.1 3.0 25 36-62 24-48 (149)
298 1f9v_A Kinesin-like protein KA 43.8 16 0.00054 37.9 3.9 36 18-53 63-103 (347)
299 1zak_A Adenylate kinase; ATP:A 43.7 8.1 0.00028 36.9 1.6 16 35-50 5-20 (222)
300 2l8b_A Protein TRAI, DNA helic 43.3 46 0.0016 30.9 6.5 70 10-83 26-96 (189)
301 1vma_A Cell division protein F 42.5 18 0.00062 36.7 4.1 35 36-74 105-139 (306)
302 1ly1_A Polynucleotide kinase; 42.3 9.4 0.00032 34.7 1.7 15 37-51 4-18 (181)
303 2jaq_A Deoxyguanosine kinase; 42.1 9.8 0.00033 35.4 1.9 14 37-50 2-15 (205)
304 1kag_A SKI, shikimate kinase I 42.1 11 0.00037 34.1 2.2 16 35-50 4-19 (173)
305 1svm_A Large T antigen; AAA+ f 41.9 11 0.00036 39.7 2.3 19 32-50 166-184 (377)
306 2plr_A DTMP kinase, probable t 41.8 8.6 0.00029 36.1 1.5 17 35-51 4-20 (213)
307 2r2a_A Uncharacterized protein 41.6 7.3 0.00025 36.9 0.9 14 227-240 87-100 (199)
308 2y65_A Kinesin, kinesin heavy 41.4 20 0.0007 37.3 4.3 37 17-53 61-103 (365)
309 1zp6_A Hypothetical protein AT 41.3 6.3 0.00022 36.5 0.4 19 32-50 6-24 (191)
310 1qhx_A CPT, protein (chloramph 41.2 11 0.00037 34.3 2.0 17 35-51 3-19 (178)
311 4gp7_A Metallophosphoesterase; 41.1 6.3 0.00022 36.1 0.3 18 34-51 8-25 (171)
312 1nks_A Adenylate kinase; therm 41.1 9.3 0.00032 35.2 1.5 14 37-50 3-16 (194)
313 1znw_A Guanylate kinase, GMP k 41.1 11 0.00037 35.6 2.0 21 31-51 16-36 (207)
314 4etp_A Kinesin-like protein KA 40.8 19 0.00064 38.2 4.0 36 18-53 119-159 (403)
315 2rhm_A Putative kinase; P-loop 40.8 8.6 0.0003 35.5 1.3 17 35-51 5-21 (193)
316 3t0q_A AGR253WP; kinesin, alph 40.7 18 0.00061 37.5 3.7 37 17-53 63-104 (349)
317 2ewv_A Twitching motility prot 40.5 7.6 0.00026 40.8 0.9 19 32-50 133-151 (372)
318 3lnc_A Guanylate kinase, GMP k 40.3 9.7 0.00033 36.6 1.6 19 33-51 25-43 (231)
319 1p5z_B DCK, deoxycytidine kina 40.2 11 0.00038 37.1 2.0 34 18-51 6-40 (263)
320 2wwf_A Thymidilate kinase, put 40.0 11 0.00036 35.5 1.8 18 34-51 9-26 (212)
321 2rep_A Kinesin-like protein KI 39.9 20 0.00067 37.6 3.9 37 17-53 93-134 (376)
322 2x8a_A Nuclear valosin-contain 39.9 13 0.00043 37.1 2.4 15 37-51 46-60 (274)
323 1aky_A Adenylate kinase; ATP:A 39.8 11 0.00039 35.8 2.0 16 35-50 4-19 (220)
324 1bg2_A Kinesin; motor protein, 39.8 23 0.00077 36.3 4.3 37 17-53 54-96 (325)
325 1tev_A UMP-CMP kinase; ploop, 39.6 10 0.00034 35.0 1.5 17 35-51 3-19 (196)
326 1nn5_A Similar to deoxythymidy 39.5 9.7 0.00033 35.9 1.4 18 34-51 8-25 (215)
327 1rz3_A Hypothetical protein rb 39.3 19 0.00064 33.7 3.4 28 24-51 6-38 (201)
328 3m6a_A ATP-dependent protease 39.2 23 0.00077 39.2 4.5 19 35-53 108-126 (543)
329 1m7g_A Adenylylsulfate kinase; 39.2 12 0.00041 35.3 2.0 19 32-50 22-40 (211)
330 2ze6_A Isopentenyl transferase 39.2 11 0.00037 37.1 1.7 15 37-51 3-17 (253)
331 3tmk_A Thymidylate kinase; pho 39.2 11 0.00038 36.1 1.7 18 34-51 4-21 (216)
332 3kta_A Chromosome segregation 39.1 18 0.00062 33.0 3.2 24 36-61 27-50 (182)
333 4eun_A Thermoresistant glucoki 39.1 12 0.00041 35.0 2.0 18 34-51 28-45 (200)
334 3c8u_A Fructokinase; YP_612366 39.0 5.6 0.00019 37.7 -0.4 28 23-50 6-37 (208)
335 3v9p_A DTMP kinase, thymidylat 39.0 8.9 0.00031 37.1 1.0 18 33-50 23-40 (227)
336 2z0h_A DTMP kinase, thymidylat 38.4 12 0.00041 34.6 1.9 15 37-51 2-16 (197)
337 2vp4_A Deoxynucleoside kinase; 38.2 11 0.00037 36.4 1.5 16 35-50 20-35 (230)
338 4tmk_A Protein (thymidylate ki 38.1 12 0.0004 35.8 1.7 18 34-51 2-19 (213)
339 1ny5_A Transcriptional regulat 38.1 21 0.00071 37.5 3.9 19 34-52 159-177 (387)
340 3eph_A TRNA isopentenyltransfe 38.0 14 0.00049 39.0 2.5 18 36-53 3-20 (409)
341 3auy_A DNA double-strand break 38.0 15 0.00052 38.3 2.8 25 36-62 26-50 (371)
342 2ehv_A Hypothetical protein PH 38.0 29 0.00099 33.3 4.7 23 31-53 26-48 (251)
343 4eaq_A DTMP kinase, thymidylat 37.9 11 0.00037 36.5 1.5 18 34-51 25-42 (229)
344 1htw_A HI0065; nucleotide-bind 37.5 13 0.00044 33.6 1.9 18 33-50 31-48 (158)
345 1rj9_A FTSY, signal recognitio 36.9 37 0.0012 34.3 5.3 37 35-75 102-138 (304)
346 4edh_A DTMP kinase, thymidylat 36.5 60 0.0021 30.7 6.6 18 34-51 5-22 (213)
347 3d3q_A TRNA delta(2)-isopenten 36.5 13 0.00043 38.4 1.8 17 36-52 8-24 (340)
348 2cdn_A Adenylate kinase; phosp 36.5 14 0.00048 34.5 2.0 16 36-51 21-36 (201)
349 3kl4_A SRP54, signal recogniti 36.3 31 0.0011 36.8 4.8 36 37-76 99-135 (433)
350 2pez_A Bifunctional 3'-phospho 36.2 12 0.00041 34.2 1.5 17 34-50 4-20 (179)
351 1y63_A LMAJ004144AAA protein; 35.9 18 0.0006 33.3 2.5 17 35-51 10-26 (184)
352 1zu4_A FTSY; GTPase, signal re 35.9 30 0.001 35.2 4.6 34 37-74 107-140 (320)
353 1e6c_A Shikimate kinase; phosp 35.8 15 0.00052 33.1 2.1 16 36-51 3-18 (173)
354 3crm_A TRNA delta(2)-isopenten 35.8 19 0.00065 36.8 3.0 17 36-52 6-22 (323)
355 1ypw_A Transitional endoplasmi 35.8 12 0.00042 43.6 1.7 17 35-51 238-254 (806)
356 3t61_A Gluconokinase; PSI-biol 35.7 15 0.00051 34.3 2.1 16 36-51 19-34 (202)
357 1knq_A Gluconate kinase; ALFA/ 35.7 13 0.00045 33.7 1.6 17 35-51 8-24 (175)
358 1ak2_A Adenylate kinase isoenz 35.5 15 0.0005 35.4 2.0 16 36-51 17-32 (233)
359 2yvu_A Probable adenylyl-sulfa 35.5 13 0.00043 34.3 1.5 17 35-51 13-29 (186)
360 1gtv_A TMK, thymidylate kinase 35.4 8.6 0.00029 36.2 0.3 14 37-50 2-15 (214)
361 3qks_A DNA double-strand break 35.2 22 0.00074 33.5 3.1 26 36-63 24-49 (203)
362 3tqc_A Pantothenate kinase; bi 34.8 31 0.0011 35.1 4.4 30 22-51 73-108 (321)
363 2pbr_A DTMP kinase, thymidylat 34.7 15 0.00052 33.7 1.9 15 37-51 2-16 (195)
364 1ukz_A Uridylate kinase; trans 34.7 15 0.0005 34.4 1.8 16 36-51 16-31 (203)
365 3lv8_A DTMP kinase, thymidylat 34.6 15 0.0005 35.8 1.8 18 34-51 26-43 (236)
366 1zuh_A Shikimate kinase; alpha 34.5 16 0.00053 33.0 1.9 16 36-51 8-23 (168)
367 3fb4_A Adenylate kinase; psych 34.5 15 0.0005 34.8 1.8 15 37-51 2-16 (216)
368 2h58_A Kinesin-like protein KI 34.5 17 0.00057 37.4 2.3 37 17-53 58-99 (330)
369 3dl0_A Adenylate kinase; phosp 34.2 15 0.00051 34.7 1.8 15 37-51 2-16 (216)
370 1qf9_A UMP/CMP kinase, protein 33.8 14 0.00049 33.8 1.5 16 36-51 7-22 (194)
371 2xb4_A Adenylate kinase; ATP-b 33.6 15 0.00052 35.1 1.7 14 37-50 2-15 (223)
372 3be4_A Adenylate kinase; malar 33.1 17 0.00057 34.6 1.9 16 36-51 6-21 (217)
373 2zfi_A Kinesin-like protein KI 33.0 26 0.00089 36.5 3.5 35 19-53 68-108 (366)
374 3a4m_A L-seryl-tRNA(SEC) kinas 32.9 14 0.00049 36.3 1.5 17 35-51 4-20 (260)
375 3nwn_A Kinesin-like protein KI 32.6 26 0.00089 36.4 3.4 34 20-53 84-123 (359)
376 1e4v_A Adenylate kinase; trans 32.5 15 0.00052 34.7 1.5 15 37-51 2-16 (214)
377 4hlc_A DTMP kinase, thymidylat 32.3 15 0.00053 34.7 1.5 16 35-50 2-17 (205)
378 3b9q_A Chloroplast SRP recepto 32.2 34 0.0012 34.5 4.1 36 36-75 101-136 (302)
379 3uie_A Adenylyl-sulfate kinase 31.9 20 0.00067 33.5 2.2 17 34-50 24-40 (200)
380 2pt5_A Shikimate kinase, SK; a 31.9 17 0.00059 32.5 1.8 15 37-51 2-16 (168)
381 3gbj_A KIF13B protein; kinesin 31.8 32 0.0011 35.7 3.9 36 18-53 70-111 (354)
382 1x88_A Kinesin-like protein KI 31.4 25 0.00084 36.6 3.0 37 17-53 65-107 (359)
383 2vhj_A Ntpase P4, P4; non- hyd 31.3 27 0.00092 35.7 3.2 20 34-53 122-141 (331)
384 3vkg_A Dynein heavy chain, cyt 31.3 71 0.0024 42.9 7.7 37 18-54 889-925 (3245)
385 2vli_A Antibiotic resistance p 31.3 14 0.00046 33.8 0.9 17 35-51 5-21 (183)
386 3cmu_A Protein RECA, recombina 31.2 30 0.001 44.2 4.2 42 33-78 1425-1466(2050)
387 4a74_A DNA repair and recombin 31.2 15 0.00053 34.8 1.3 24 31-54 21-44 (231)
388 2woo_A ATPase GET3; tail-ancho 31.2 50 0.0017 33.6 5.3 35 36-74 20-54 (329)
389 2wbe_C Bipolar kinesin KRP-130 31.2 32 0.0011 35.9 3.8 36 18-53 78-119 (373)
390 3b6u_A Kinesin-like protein KI 30.9 29 0.00098 36.2 3.4 36 18-53 79-120 (372)
391 2bdt_A BH3686; alpha-beta prot 30.7 15 0.00052 33.8 1.1 15 36-50 3-17 (189)
392 2cbz_A Multidrug resistance-as 30.7 14 0.00049 35.8 1.0 43 3-50 4-46 (237)
393 3e70_C DPA, signal recognition 30.5 41 0.0014 34.4 4.5 17 35-51 129-145 (328)
394 3cio_A ETK, tyrosine-protein k 30.4 1E+02 0.0035 30.8 7.4 49 22-74 85-140 (299)
395 2ocp_A DGK, deoxyguanosine kin 30.2 16 0.00054 35.4 1.2 16 35-50 2-17 (241)
396 3tif_A Uncharacterized ABC tra 30.2 15 0.0005 35.7 1.0 45 3-50 2-46 (235)
397 1xjc_A MOBB protein homolog; s 30.0 47 0.0016 30.3 4.3 39 36-78 5-43 (169)
398 3dzd_A Transcriptional regulat 29.8 46 0.0016 34.6 4.8 29 23-51 140-168 (368)
399 4a14_A Kinesin, kinesin-like p 29.8 33 0.0011 35.3 3.6 36 17-52 60-101 (344)
400 2bbw_A Adenylate kinase 4, AK4 29.5 21 0.00072 34.6 2.0 16 35-50 27-42 (246)
401 1tf7_A KAIC; homohexamer, hexa 29.5 52 0.0018 36.0 5.4 50 32-86 278-327 (525)
402 3asz_A Uridine kinase; cytidin 29.5 17 0.00058 34.1 1.3 17 34-50 5-21 (211)
403 3bfv_A CAPA1, CAPB2, membrane 29.4 1.2E+02 0.004 29.8 7.6 49 21-73 62-117 (271)
404 3lda_A DNA repair protein RAD5 29.2 39 0.0013 35.7 4.1 21 34-54 177-197 (400)
405 3cf2_A TER ATPase, transitiona 29.2 22 0.00077 41.1 2.4 16 36-51 239-254 (806)
406 1v8k_A Kinesin-like protein KI 29.1 29 0.00099 36.7 3.1 37 17-53 131-173 (410)
407 1ihu_A Arsenical pump-driving 28.8 50 0.0017 36.7 5.2 36 35-74 8-43 (589)
408 1sgw_A Putative ABC transporte 28.8 17 0.00057 34.8 1.1 42 2-51 10-51 (214)
409 1odf_A YGR205W, hypothetical 3 28.8 34 0.0012 34.3 3.4 14 37-50 33-46 (290)
410 2xxa_A Signal recognition part 28.7 48 0.0016 35.4 4.8 35 37-74 102-136 (433)
411 3qf7_A RAD50; ABC-ATPase, ATPa 28.6 32 0.0011 35.7 3.3 24 37-62 25-48 (365)
412 2owm_A Nckin3-434, related to 28.6 41 0.0014 36.0 4.2 36 18-53 114-155 (443)
413 2nr8_A Kinesin-like protein KI 28.5 34 0.0011 35.5 3.4 35 19-53 82-122 (358)
414 1tq4_A IIGP1, interferon-induc 28.2 38 0.0013 35.8 3.9 29 22-50 36-84 (413)
415 3p32_A Probable GTPase RV1496/ 28.2 1.1E+02 0.0036 31.5 7.3 34 19-52 59-96 (355)
416 1t5c_A CENP-E protein, centrom 28.2 29 0.001 35.8 2.9 36 18-53 55-96 (349)
417 2vvg_A Kinesin-2; motor protei 28.1 32 0.0011 35.6 3.1 37 17-53 66-108 (350)
418 2pze_A Cystic fibrosis transme 28.1 16 0.00056 35.2 0.9 44 2-50 6-49 (229)
419 3cmw_A Protein RECA, recombina 28.0 37 0.0012 42.8 4.1 42 32-77 31-72 (1706)
420 3u06_A Protein claret segregat 27.8 25 0.00084 37.3 2.3 36 18-53 117-157 (412)
421 1gvn_B Zeta; postsegregational 27.8 19 0.00064 36.1 1.3 16 36-51 34-49 (287)
422 3ld9_A DTMP kinase, thymidylat 27.8 20 0.0007 34.4 1.5 17 35-51 21-37 (223)
423 1ls1_A Signal recognition part 27.7 53 0.0018 32.9 4.7 35 36-74 99-133 (295)
424 1goj_A Kinesin, kinesin heavy 27.7 29 0.00098 36.0 2.7 36 18-53 58-99 (355)
425 3bfn_A Kinesin-like protein KI 27.6 29 0.00099 36.4 2.7 37 17-53 75-117 (388)
426 2ffh_A Protein (FFH); SRP54, s 27.5 53 0.0018 34.9 4.8 33 37-73 100-132 (425)
427 1pzn_A RAD51, DNA repair and r 27.5 23 0.0008 36.6 2.0 24 34-57 130-153 (349)
428 2og2_A Putative signal recogni 27.4 44 0.0015 34.7 4.1 16 36-51 158-173 (359)
429 2ff7_A Alpha-hemolysin translo 27.3 17 0.00059 35.5 0.9 44 3-51 8-51 (247)
430 3cob_A Kinesin heavy chain-lik 27.3 21 0.00073 37.2 1.6 37 17-53 57-98 (369)
431 2pcj_A ABC transporter, lipopr 27.3 16 0.00055 35.1 0.7 41 3-50 5-45 (224)
432 3lre_A Kinesin-like protein KI 27.1 25 0.00087 36.4 2.2 36 18-53 83-124 (355)
433 2oze_A ORF delta'; para, walke 27.1 91 0.0031 30.8 6.4 47 23-73 21-71 (298)
434 2i3b_A HCR-ntpase, human cance 27.0 28 0.00095 32.4 2.3 16 35-50 1-16 (189)
435 2ghi_A Transport protein; mult 27.0 18 0.00062 35.7 1.0 46 2-51 17-62 (260)
436 2jeo_A Uridine-cytidine kinase 26.9 19 0.00065 34.9 1.1 29 23-51 13-41 (245)
437 3b5x_A Lipid A export ATP-bind 26.7 17 0.00058 40.6 0.8 43 3-50 342-384 (582)
438 1ye8_A Protein THEP1, hypothet 26.7 25 0.00087 32.3 1.9 15 37-51 2-16 (178)
439 3cf2_A TER ATPase, transitiona 26.4 25 0.00086 40.7 2.1 21 36-58 512-532 (806)
440 2qt1_A Nicotinamide riboside k 26.3 16 0.00053 34.3 0.4 16 35-50 21-36 (207)
441 2v3c_C SRP54, signal recogniti 26.2 44 0.0015 35.6 3.9 34 37-74 101-134 (432)
442 2heh_A KIF2C protein; kinesin, 26.0 36 0.0012 35.7 3.1 37 17-53 111-153 (387)
443 1j8m_F SRP54, signal recogniti 26.0 49 0.0017 33.2 4.1 34 37-74 100-133 (297)
444 1g6h_A High-affinity branched- 26.0 19 0.00065 35.4 0.9 41 3-50 8-48 (257)
445 1mv5_A LMRA, multidrug resista 25.7 17 0.00057 35.5 0.4 43 3-51 2-44 (243)
446 1via_A Shikimate kinase; struc 25.7 29 0.00098 31.4 2.1 15 37-51 6-20 (175)
447 1sq5_A Pantothenate kinase; P- 25.6 38 0.0013 34.1 3.2 18 34-51 79-96 (308)
448 2wsm_A Hydrogenase expression/ 25.6 47 0.0016 31.0 3.7 32 19-50 12-45 (221)
449 2iyv_A Shikimate kinase, SK; t 25.4 30 0.001 31.4 2.2 16 36-51 3-18 (184)
450 1vht_A Dephospho-COA kinase; s 25.4 25 0.00084 33.2 1.6 16 36-51 5-20 (218)
451 1ji0_A ABC transporter; ATP bi 25.3 20 0.00068 34.8 0.9 41 3-50 7-47 (240)
452 1vpl_A ABC transporter, ATP-bi 25.3 20 0.00069 35.3 0.9 42 3-51 16-57 (256)
453 2qi9_C Vitamin B12 import ATP- 25.0 20 0.00069 35.1 0.9 19 32-50 23-41 (249)
454 2d2e_A SUFC protein; ABC-ATPas 24.9 20 0.0007 35.0 0.9 42 3-51 4-45 (250)
455 1byi_A Dethiobiotin synthase; 24.8 69 0.0024 30.0 4.8 33 37-73 4-36 (224)
456 3la6_A Tyrosine-protein kinase 24.8 1.4E+02 0.0048 29.5 7.2 51 19-73 70-127 (286)
457 3cmu_A Protein RECA, recombina 24.7 63 0.0021 41.4 5.4 42 33-78 1079-1120(2050)
458 2zu0_C Probable ATP-dependent 24.6 21 0.00072 35.3 0.9 41 3-50 21-61 (267)
459 2yz2_A Putative ABC transporte 24.5 21 0.00073 35.2 1.0 48 1-50 1-48 (266)
460 2nq2_C Hypothetical ABC transp 24.5 21 0.00071 35.0 0.9 42 3-50 5-46 (253)
461 3gfo_A Cobalt import ATP-bindi 24.4 21 0.0007 35.6 0.8 42 3-50 8-49 (275)
462 1cke_A CK, MSSA, protein (cyti 24.4 30 0.001 32.7 2.0 16 35-50 5-20 (227)
463 2ixe_A Antigen peptide transpo 24.1 22 0.00075 35.3 1.0 44 3-50 17-60 (271)
464 1z6t_A APAF-1, apoptotic prote 23.9 40 0.0014 37.4 3.2 29 24-52 132-164 (591)
465 3umf_A Adenylate kinase; rossm 23.9 22 0.00077 34.0 1.0 17 34-50 28-44 (217)
466 1b0u_A Histidine permease; ABC 23.8 22 0.00076 35.0 0.9 41 3-50 7-47 (262)
467 3qkt_A DNA double-strand break 23.6 41 0.0014 34.4 3.0 25 36-62 24-48 (339)
468 3l0o_A Transcription terminati 23.4 65 0.0022 33.9 4.3 44 9-52 144-192 (427)
469 4g1u_C Hemin import ATP-bindin 23.2 23 0.00078 35.1 0.9 41 3-50 12-52 (266)
470 3nh6_A ATP-binding cassette SU 22.9 20 0.00069 36.3 0.4 43 3-51 54-96 (306)
471 3ug7_A Arsenical pump-driving 22.9 70 0.0024 32.8 4.6 36 36-75 27-62 (349)
472 3bs4_A Uncharacterized protein 22.8 57 0.002 32.1 3.7 49 35-89 21-70 (260)
473 2olj_A Amino acid ABC transpor 22.8 24 0.00082 34.9 0.9 42 3-51 25-66 (263)
474 3zq6_A Putative arsenical pump 22.7 75 0.0026 32.2 4.8 36 36-75 15-50 (324)
475 2ihy_A ABC transporter, ATP-bi 22.6 24 0.00081 35.2 0.9 42 2-50 21-62 (279)
476 3iqw_A Tail-anchored protein t 22.4 78 0.0027 32.3 4.8 35 36-74 17-51 (334)
477 2if2_A Dephospho-COA kinase; a 22.2 32 0.0011 31.9 1.7 15 37-51 3-17 (204)
478 3f8t_A Predicted ATPase involv 22.1 37 0.0013 36.7 2.2 31 20-51 217-254 (506)
479 3cmw_A Protein RECA, recombina 21.8 56 0.0019 41.1 4.1 38 35-76 732-769 (1706)
480 2bbs_A Cystic fibrosis transme 21.8 24 0.00083 35.4 0.7 18 34-51 63-80 (290)
481 2vt1_A Surface presentation of 21.5 42 0.0014 24.0 1.7 14 195-208 39-52 (52)
482 2yhs_A FTSY, cell division pro 21.3 52 0.0018 35.7 3.3 34 36-73 294-327 (503)
483 1ko7_A HPR kinase/phosphatase; 21.0 68 0.0023 32.5 3.9 32 22-53 115-162 (314)
484 3c01_A Surface presentation of 21.0 38 0.0013 23.8 1.4 13 196-208 36-48 (48)
485 4e22_A Cytidylate kinase; P-lo 20.9 39 0.0013 32.9 2.1 18 34-51 26-43 (252)
486 3hjn_A DTMP kinase, thymidylat 20.5 39 0.0013 31.6 1.9 13 38-50 3-15 (197)
487 1e69_A Chromosome segregation 20.3 43 0.0015 34.0 2.3 24 36-61 25-48 (322)
488 2f1r_A Molybdopterin-guanine d 20.2 28 0.00094 31.9 0.7 16 36-51 3-18 (171)
489 2eyq_A TRCF, transcription-rep 20.1 65 0.0022 39.1 4.2 107 531-680 811-918 (1151)
490 1vt4_I APAF-1 related killer D 20.0 1.8E+02 0.006 35.0 7.5 35 16-53 131-168 (1221)
No 1
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=100.00 E-value=5.1e-87 Score=766.43 Aligned_cols=585 Identities=21% Similarity=0.326 Sum_probs=407.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhhhh
Q 004910 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93 (724)
Q Consensus 14 ~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~~~ 93 (724)
|+ |||+|++||.+|++++.+++++++|||||||||++||+|++.++... ++ +|+|+|||++|++|++++++++...
T Consensus 2 ~~-~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~-kvli~t~T~~l~~Qi~~el~~l~~~ 77 (620)
T 4a15_A 2 YE-NRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KL-KVLYLVRTNSQEEQVIKELRSLSST 77 (620)
T ss_dssp ----CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TC-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CC-eEEEECCCHHHHHHHHHHHHHHhhc
Confidence 55 59999999999999999999999999999999999999999998654 46 9999999999999999999998642
Q ss_pred cccCCCCCCceEEEEecCcccccc-chHhhhccCchhHHH---HHHHhhhhHHHhhhhcCCCCCCCcCcccchhhhhc-C
Q 004910 94 QTRHLGPAAKILAIGLSSRKNLCV-NSRVLAAENRDSVDA---ACRKRTASWVRALAAENPNIETCEFFENYEKAASA-A 168 (724)
Q Consensus 94 ~~~~~~~~~~~~~~~l~gr~~~C~-~~~~~~~~~~~~~~~---~c~~l~~~w~~~~~~~~~d~~~c~~~~~~~~~~~~-~ 168 (724)
.+++++.++||.|+|+ ++.+....+ ..+++ .|..+...|.. + +...|+||.+.....+. .
T Consensus 78 --------~~~~~~~l~gr~~lC~~~~~~~~~~~-~~~~~~~~~C~~l~~~~~~----~--~~~~C~~~~~~~~~gd~~~ 142 (620)
T 4a15_A 78 --------MKIRAIPMQGRVNMCILYRMVDDLHE-INAESLAKFCNMKKREVMA----G--NEAACPYFNFKIRSDETKR 142 (620)
T ss_dssp --------SCCCEEECCCHHHHCSSHHHHCCCSS-CCHHHHHHHHHHHHHHHHT----T--CTTSSTTCSGGGGCHHHHH
T ss_pred --------cCeEEEEEECCCcccccChhhhhccc-chhhhHHHHHHHHHhcccc----C--CCCCCCcccccCcccchhH
Confidence 3688999999999999 988765433 23333 78776544421 1 23679999876421110 0
Q ss_pred CCCCCCCCHHHHHHhcccCCCCchHHHHhhhccCcEEEEcCccccCHHHHhHhhh---cCCCCcEEEEeCCCCchHHhhh
Q 004910 169 VLPPGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISK---EMQKESVVVFDEAHNIDNVCIE 245 (724)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adivv~n~~~ll~~~~~~~~~~---~l~~~~~lIiDEAHnL~~~~~~ 245 (724)
.+..+.++++++.+.|+.++.||||.+|+.+..|||||+||+|||++.++..... ..++..++||||||||+|+|++
T Consensus 143 ~l~~~~~die~l~~~~~~~~~CPy~~aR~~~~~ADvVV~ny~ylld~~~r~~~~~~~~i~p~~~ivI~DEAHNL~d~a~~ 222 (620)
T 4a15_A 143 FLFDELPTAEEFYDYGERNNVCPYESMKAALPDADIVIAPYAYFLNRSVAEKFLSHWGVSRNQIVIILDEAHNLPDIGRS 222 (620)
T ss_dssp HHHHHCCCHHHHHHHHHHTTCCHHHHHHHHGGGCSEEEEEHHHHTCHHHHHHHHHHHTCCGGGEEEEETTGGGHHHHHHH
T ss_pred HhccCCCCHHHHHHHhhhcCCCccHHHHHHhhcCCEEEeCchhhcCHHHHHHHHHhhccCcCCeEEEEECCCchHHHHHH
Confidence 1123578999999999999999999999999999999999999999987754221 2468899999999999999999
Q ss_pred hcceeecHHHHHHHHHHHHHHHHHHHHhhh-cchhHHHHHHHHHHHHH-HhcCCCccccccccCCCCCchhhhhccCcch
Q 004910 246 ALSVSVRRQTLEGATRNLSRINQEIERFKA-TDAGRLRAEYNRLVEGL-ALRGNLPIADAWLSNPALPSDILKEAVPGNI 323 (724)
Q Consensus 246 ~~s~~ls~~~l~~~~~~l~~~~~~~~~~~~-~~~~~l~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 323 (724)
++|.++|...|..+.+++..+... .+.. .....+.+.+...++.+ .... . . ....+ .+
T Consensus 223 ~~S~~ls~~~l~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~-~-~~~~~----~~--- 282 (620)
T 4a15_A 223 IGSFRISVESLNRADREAQAYGDP--ELSQKIHVSDLIEMIRSALQSMVSERC---------G-K-GDVRI----RF--- 282 (620)
T ss_dssp HHCEEEEHHHHHHHHHHHHHTTCC--EEETTEEHHHHHHHHHHHHHHHHHHHC---------S-S-SCEEE----CT---
T ss_pred hhcceeCHHHHHHHHHHHHHHHhh--hhhhhHHHHHHHHHHHHHHHHHHHHhh---------c-c-cccCC----Ch---
Confidence 999999999999988776653110 0000 00111111111111111 0000 0 0 00000 01
Q ss_pred hchHHHHHHHHHHHHHHHhhhccccccccChhHHHHHHHhhhcccchhhhhhHHHHHHHHHHhhhcCCCccchhHHHHHH
Q 004910 324 RRAEHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDF 403 (724)
Q Consensus 324 ~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~l~~l~~f 403 (724)
..+...+..+. .. ..+....++..+.. ..+.+.. ............+..+.+|
T Consensus 283 ---~~l~~~~~~~~----~~------~~~~l~~~~~~l~~-----------~~~~~~~---~~~~~~~~~~~~~~~~~~f 335 (620)
T 4a15_A 283 ---QEFMEYMRIMN----KR------SEREIRSLLNYLYL-----------FGEYVEN---EKEKVGKVPFSYCSSVASR 335 (620)
T ss_dssp ---HHHHHHHHHHH----TC------CHHHHHHHHHHHHH-----------HHHHHHH---HHHHTTSCCCCHHHHHHHH
T ss_pred ---HHHHHHHHHhh----cc------cHHHHHHHHHHHHH-----------HHHHHHh---hccccccccccHHHHHHHH
Confidence 11111111110 00 00000000000100 0000000 0000011112334566666
Q ss_pred HHHhcccC-CCeEEEEecCCCCCCCCCCCeEEEEecCccccchHHhhccCeEEEecCCCCCccchhhhhCCCCccccccc
Q 004910 404 ATLVGTYT-RGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRSFK 482 (724)
Q Consensus 404 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~l~~s~~l~~l~~~~~s~Il~SaTL~~~~~~~~~lg~~~~~~~~~~ 482 (724)
+..+.... +++..|++..+ +..|+++|+||+..|+ +| +++++|||||||+|.++|.+.||++ ....+++
T Consensus 336 l~~~~~~~~~~~~~~~~~~~-------~~~l~~~~l~~~~~l~-~~-~~~~~il~SaTL~p~~~~~~~lGl~-~~~~~~~ 405 (620)
T 4a15_A 336 IIAFSDQDEEKYAAILSPED-------GGYMQAACLDPSGILE-VL-KESKTIHMSGTLDPFDFYSDITGFE-IPFKKIG 405 (620)
T ss_dssp HHHHHTSCTTTEEEEEECGG-------GCEEEEEECCTHHHHG-GG-GGSEEEEEESSCCSHHHHHHHHCCC-CCEEECC
T ss_pred HHHHhhcCCCCEEEEEEeCC-------CcEEEEEECCHHHHHH-HH-hCCeEEEEccCCCcHHHHHHHhCCC-ceeeecC
Confidence 66653333 37888887543 3689999999999999 99 9999999999999999999999998 6566778
Q ss_pred eeecCCceeeEEeecCCCCcceeecccCCCChHHHHHHHHHHHHHhcccCCcEEEEecChHHHHHHHHHHhhcccHHHHh
Q 004910 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562 (724)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~l~s~f~~~~~~~~~~~~~~~i~~~~~~~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~ 562 (724)
++++.++...++++ .++++|+.++ +.+.+.+++.|.++++.++||+|||||||..|+++++.|+. +
T Consensus 406 spf~~~~~~~~~~~------~~~~~~~~r~-~~~~~~~~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~l~~------~- 471 (620)
T 4a15_A 406 EIFPPENRYIAYYD------GVSSKYDTLD-EKELDRMATVIEDIILKVKKNTIVYFPSYSLMDRVENRVSF------E- 471 (620)
T ss_dssp CCSCGGGEEEEEEC------CC-------C-HHHHHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHTSSCCS------C-
T ss_pred CCCCHHHeEEEEeC------CCCCcCCCCC-HHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHh------c-
Confidence 88887776655432 4667787765 45678899999999999999999999999999999999872 1
Q ss_pred cCcceEEeCCCc--hhHHHHHHHHHHhccCCCCeEEEEeecCcccccccCCCCCceEEEEEccCCCCCccHHHHHHHHHH
Q 004910 563 QHKLVFIETQDV--VETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYL 640 (724)
Q Consensus 563 ~~~~i~~e~~~~--~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~~~~~l 640 (724)
. .+ |.++. .+...++++|+ ++++|||||+||+|||||||+|+.|++|||+|||||+| ||.+++|++|+
T Consensus 472 ~-~~---~~q~~~~~~~~~ll~~f~-----~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~-~p~~~ar~~~~ 541 (620)
T 4a15_A 472 H-MK---EYRGIDQKELYSMLKKFR-----RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRP-DAINRSLFDYY 541 (620)
T ss_dssp C-EE---CCTTCCSHHHHHHHHHHT-----TSCCEEEEETTSCC--------CCCCEEEESSCCCCCC-CHHHHHHHHHH
T ss_pred c-hh---ccCCCChhHHHHHHHHhc-----cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCC-CHHHHHHHHHH
Confidence 1 12 55553 46778899997 47899999999999999999999999999999999999 69999999999
Q ss_pred HHhcCCCCCcc-cHHHHHHHHHHhhcccccCCCCeEEEEEEecccCCCcccCCCchHHHhhcc
Q 004910 641 RDTFQIKEGDF-LTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLR 702 (724)
Q Consensus 641 ~~~~~~~~~~~-~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~R~~~~~~~~~lp~w~~~~~~ 702 (724)
+++++++ +.| |..+|+++++||+||+|||++|+|+|+|+|+|| +.|++.||+ ++..+.
T Consensus 542 ~~~~g~~-~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~--~~~~~~LP~-~~~~~~ 600 (620)
T 4a15_A 542 ERKYGKG-WEYSVVYPTAIKIRQEIGRLIRSAEDTGACVILDKRA--GQFRKFIPD-MKKTSD 600 (620)
T ss_dssp HHHHSCH-HHHHTHHHHHHHHHHHHHTTCCSTTCCEEEEEECGGG--GGGGGGSTT-CEEESC
T ss_pred HHhhCCC-chHHhHHHHHHHHHHHhCccccCCCceEEEEEEccch--HHHHHhCCc-hhhhcC
Confidence 9988633 222 444499999999999999999999999999999 669999999 665544
No 2
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=100.00 E-value=9.2e-77 Score=677.15 Aligned_cols=530 Identities=20% Similarity=0.280 Sum_probs=380.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhhh
Q 004910 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHN 92 (724)
Q Consensus 13 p~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~~ 92 (724)
+|+ +||+|.+||.+|.+++.+++++++|||||||||++||+|++.. +. +|+|+|||++|++|+.++++.+.+
T Consensus 1 ~~~-~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~-~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 1 MVK-LRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KP-KVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CCS-CCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CS-EEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CC-eEEEEcCCHHHHHHHHHHHHHHhh
Confidence 355 5999999999999999999999999999999999999999872 35 999999999999999999998743
Q ss_pred hcccCCCCCCceEEEEecCccccccchHhhhccCchhHHHHHHHhhhhHHHhhhhcCCCCCCCcCcccchhhhhcCCCCC
Q 004910 93 YQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLPP 172 (724)
Q Consensus 93 ~~~~~~~~~~~~~~~~l~gr~~~C~~~~~~~~~~~~~~~~~c~~l~~~w~~~~~~~~~d~~~c~~~~~~~~~~~~~~~~~ 172 (724)
..+++++.++||+|+|+++.+. .. ++.. .|. .|+||.+.....
T Consensus 73 --------~~~~~~~~l~gr~~~c~~~~~~-~~-~~~~--~c~------------------~c~~~~~~~~~g------- 115 (551)
T 3crv_A 73 --------KRNITFSFLVGKPSSCLYAEKG-AE-SEDI--PCK------------------YCELKGSIVEVK------- 115 (551)
T ss_dssp --------SSCCCEEECCCHHHHCTTBCTT-CC-GGGC--CGG------------------GCTTTTCCCCCC-------
T ss_pred --------hcCccEEEEccccccCcCchhc-CC-Cccc--ccC------------------CCCCcccccccc-------
Confidence 2367889999999999998765 32 1111 341 477776542210
Q ss_pred CCCCHHHHHHh----cccCCCCchHHHHhhhccCcEEEEcCccccCHHHHhHhhhcCCCCcEEEEeCCCCchHHhhhhcc
Q 004910 173 GVYTLQDLRAF----GKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIISKEMQKESVVVFDEAHNIDNVCIEALS 248 (724)
Q Consensus 173 ~~~~~~~~~~~----~~~~~~Cpy~~~r~~~~~adivv~n~~~ll~~~~~~~~~~~l~~~~~lIiDEAHnL~~~~~~~~s 248 (724)
...+++++.+. |..++.|||+.+|+.+..|||||+||+||+++..+..+. ..++..++||||||||++ |++++|
T Consensus 116 ~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l~~~~~~~~~~-~~~~~~~vIiDEAHnl~d-~~~~~s 193 (551)
T 3crv_A 116 TDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYFFIDRYREFID-IDLREYMIVIDEAHNLDK-VNELEE 193 (551)
T ss_dssp CCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHHHCHHHHTTSC-CCSTTEEEEETTGGGGGG-GGGGGC
T ss_pred ccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHhcCHHHHHhcC-CCcCCeEEEEecccchHH-HHHhhc
Confidence 12334443332 346789999999999999999999999999997665432 236888999999999999 999999
Q ss_pred eeecHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHhcCCCccccccccCCCCCchhhhhccCcchhchHH
Q 004910 249 VSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRAEH 328 (724)
Q Consensus 249 ~~ls~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~ 328 (724)
.+++..++..+.+.+..... . +.+..+...+..... ....+...+..+ . .
T Consensus 194 ~~ls~~~l~~~~~~l~~~~~----------~---~~l~~l~~~l~~~~~--~~~~~~~~~~~~---------~------~ 243 (551)
T 3crv_A 194 RSLSEITIQMAIKQSKSEES----------R---RILSKLLNQLREVVL--PDEKYIKVENVP---------K------L 243 (551)
T ss_dssp EEEEHHHHHHHHHHCSCHHH----------H---HHHHHHHHHHTTSCC--SCSSCEECSCCC---------C------C
T ss_pred eecCHHHHHHHHHHHHHHHH----------H---HHHHHHHHHHHHHhh--ccccccccccCh---------H------H
Confidence 99999999988776543311 0 112222233322100 000000000000 0 0
Q ss_pred HHHHHHHHHHHHHhhhccccccccChhHHHHHHHhhhcccchhhhhhHHHHHHHHHHhhhcCCCccchhHHHHHHHHHhc
Q 004910 329 FLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATLVG 408 (724)
Q Consensus 329 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~l~~l~~f~~~~~ 408 (724)
+...+..+.+.+....+ ...+. .......+..+.+|+..+.
T Consensus 244 ~~~~l~~l~~~l~~~~~--------------~~~~~-------------------------~~~~~~~~~~l~~~~~~~~ 284 (551)
T 3crv_A 244 SKEELEILADDYEDIRK--------------DSLKQ-------------------------GKVNKIHIGSILRFFSLLS 284 (551)
T ss_dssp CHHHHHHHHHHHHHHHH--------------HHHHT-------------------------TCBCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------------hhhhc-------------------------CCcccchHHHHHHHHHHHh
Confidence 11112222221111000 00000 0000111223333332221
Q ss_pred ccCCCeEEEEecCCCCCCCCCCCeEEEEecCccccchHHhhcc-CeEEEecCCCCCccchhhhhCCC-Ccc----ccccc
Q 004910 409 TYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRF-QSVVITSGTLSPIDLYPRLLNFH-PVV----SRSFK 482 (724)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~s~~l~~l~~~~-~s~Il~SaTL~~~~~~~~~lg~~-~~~----~~~~~ 482 (724)
. .++++ .+. + + .++++|+||+..|+ +|+++ +++|||||||+|.++|.+.||++ +.. ...++
T Consensus 285 ~-~~~~v--~~~-~-------~-~l~~~pl~~~~~l~-~~~~~~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~ 351 (551)
T 3crv_A 285 I-GSFIP--FSY-S-------K-RLVIKNPEISYYLN-LLNDNELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQ 351 (551)
T ss_dssp H-SSCEE--EEE-T-------T-EEEEECCCTHHHHG-GGGCTTCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTT
T ss_pred c-cCCeE--ecc-C-------C-EEEEEECCHHHHHH-HHhccCceEEEEeeCCCcHHHHHHHhCCCCccccccceeecC
Confidence 1 23442 221 1 2 79999999999999 99998 99999999999999999999998 332 34567
Q ss_pred eeecCCceeeEEeecCCCCcceeecccCCCChHHHHHHHHHHHHHhcccCCcEEEEecChHHHHHHHHHHhhcccHHHHh
Q 004910 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562 (724)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~l~s~f~~~~~~~~~~~~~~~i~~~~~~~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~ 562 (724)
+++ +++.. ++++. .++++|+.|+ +.+.+.+++.|.+++..++||+|||||||+.|+++++.
T Consensus 352 spf-~~~~~-l~v~~-----~~~~~~~~r~-~~~~~~l~~~i~~l~~~~~g~~lvlF~Sy~~l~~v~~~----------- 412 (551)
T 3crv_A 352 KRV-SGSYE-CYIGV-----DVTSKYDMRS-DNMWKRYADYLLKIYFQAKANVLVVFPSYEIMDRVMSR----------- 412 (551)
T ss_dssp SCC-SCEEE-EEEEC-----SCCCCTTTCC-HHHHHHHHHHHHHHHHHCSSEEEEEESCHHHHHHHHTT-----------
T ss_pred CcC-CCceE-EEEeC-----CCCCccccCC-HHHHHHHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHh-----------
Confidence 777 55554 34443 4667887776 56778999999999999999999999999999999862
Q ss_pred cCcceEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccCC---CCCceEEEEEccCCCCCccHHHHHHHHH
Q 004910 563 QHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFD---RHYGRLVIMFGVPFQYTLSKILLARLEY 639 (724)
Q Consensus 563 ~~~~i~~e~~~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~~---~~~~r~vii~glPfp~~~dp~~~~~~~~ 639 (724)
..++||+|+++. +...+++.|++ .+++|||||+||+|||||||+ |+.||+|||+|||||+| ||.+++|++|
T Consensus 413 ~~~~v~~q~~~~-~~~~~~~~~~~----~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~ 486 (551)
T 3crv_A 413 ISLPKYVESEDS-SVEDLYSAISA----NNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQR 486 (551)
T ss_dssp CCSSEEECCSSC-CHHHHHHHTTS----SSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHH
T ss_pred cCCcEEEcCCCC-CHHHHHHHHHh----cCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHH
Confidence 136799998763 45667888863 356999999999999999999 99999999999999999 9999999999
Q ss_pred HHHhcCCCCC-cccHHHHHHHHHHhhcccccCCCCeEEEEEEecccCCCcccCCCchHHHhhcccc
Q 004910 640 LRDTFQIKEG-DFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDA 704 (724)
Q Consensus 640 l~~~~~~~~~-~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~R~~~~~~~~~lp~w~~~~~~~~ 704 (724)
++++.|.+++ .+|..+|+++++||+||+|||++|+|+|+|+|+||.+ +|++.+++..
T Consensus 487 ~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~D~G~v~llD~R~~~--------~~~~~~~~~~ 544 (551)
T 3crv_A 487 VSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVNDKCNVWLLDKRFES--------LYWKKNLKCL 544 (551)
T ss_dssp TTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTTCEEEEEEESGGGGS--------HHHHHHTTCT
T ss_pred HHHhhCCchhHHHHHHHHHHHHHHHhccCccCCCccEEEEEeehhccc--------chhhhhceeC
Confidence 9966543222 2154449999999999999999999999999999975 7888877763
No 3
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=100.00 E-value=5e-70 Score=619.21 Aligned_cols=517 Identities=18% Similarity=0.249 Sum_probs=315.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
.+|+ +||+|.+||.+|.+++.+++++++|||||||||++||+|++.+ ++ +|+|+|||++|++|++++++++
T Consensus 4 ~~~~-~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~-~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKLQ-LRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KK-KVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TC-EEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CC-cEEEEcCCHHHHHHHHHHHHhc-
Confidence 4575 6999999999999999999999999999999999999999764 35 9999999999999999998874
Q ss_pred hhcccCCCCCCceEEEEecCccccccchHhhhccCchhHHHHHHHhhhhHHHhhhhcCCCCCCCcCcccchhhhhcCCCC
Q 004910 92 NYQTRHLGPAAKILAIGLSSRKNLCVNSRVLAAENRDSVDAACRKRTASWVRALAAENPNIETCEFFENYEKAASAAVLP 171 (724)
Q Consensus 92 ~~~~~~~~~~~~~~~~~l~gr~~~C~~~~~~~~~~~~~~~~~c~~l~~~w~~~~~~~~~d~~~c~~~~~~~~~~~~~~~~ 171 (724)
+++++.++||+++|+++...... + +..| ..|++++......+ .
T Consensus 75 -----------~~~~~~l~gr~~lC~~~~~~~~~--~--~~~c------------------~~c~~~~~~~~~gd--~-- 117 (540)
T 2vl7_A 75 -----------GLKTGFLIGKSASCIYAQGDEEP--D--EINC------------------SKCRLKDKIKTIED--K-- 117 (540)
T ss_dssp -----------TCCEEEC--------------------------------------------------------------
T ss_pred -----------CCcEEEecCCccccCCchhcccc--c--ccCC------------------CCCCchhccccccc--C--
Confidence 35688999999999998754211 0 0123 13555543221110 0
Q ss_pred CCCCCHHHHHHhcccCCCCchHHHHhhhccCcEEEEcCccccCHHHHhHhh-----hcCCCCcEEEEeCCCCchHHhhhh
Q 004910 172 PGVYTLQDLRAFGKQQGWCPYFLARHMVQFANVVVYSYQYLLDPKVAGIIS-----KEMQKESVVVFDEAHNIDNVCIEA 246 (724)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adivv~n~~~ll~~~~~~~~~-----~~l~~~~~lIiDEAHnL~~~~~~~ 246 (724)
++.+.+.+.+..++.|||+.+|+.+..|||||+||+||+++..++.+. ..+++.+++||||||||++ ++++
T Consensus 118 ---~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~-a~~~ 193 (540)
T 2vl7_A 118 ---EPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE-ADKW 193 (540)
T ss_dssp ------------------------CTTGGGCSEEEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG-GGGG
T ss_pred ---CcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH-HHHH
Confidence 111122334567899999999999999999999999999988765543 1357889999999999966 8999
Q ss_pred cceeecHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHhcCCCccccccccCCCCCchhhhhccCcchhch
Q 004910 247 LSVSVRRQTLEGATRNLSRINQEIERFKATDAGRLRAEYNRLVEGLALRGNLPIADAWLSNPALPSDILKEAVPGNIRRA 326 (724)
Q Consensus 247 ~s~~ls~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~ 326 (724)
+|.+++..++..+.+++..... ........+.+.+..+.+.+..... ...+..... .+.. .
T Consensus 194 ~s~~ls~~~l~~~~~~l~~~~~----~~~~~~~~l~~~~~~l~~~l~~~~~---~~~~~~~~~---------~~~~---~ 254 (540)
T 2vl7_A 194 FTRKISRKMLERALKEIEIVER----LNRIDAKKVKDYINLLIDYMSKLIK---DGRCHELSL---------MPLP---D 254 (540)
T ss_dssp GCEEECHHHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHHHHHHTSCC---SSSEEEESC---------CCCC---C
T ss_pred hccccCHHHHHHHHHHHHHHHh----cchhhHHHHHHHHHHHHHHHHHhhc---cccccchhh---------cccc---c
Confidence 9999999999998887765321 0111223333334444444432110 000000000 0100 0
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccChhHHHHHHHhhhcccchhhhhhHHHHHHHHHHhhhcCCCccchhHHHHHHHHH
Q 004910 327 EHFLHVLRRLVQYLRGRLETENVEKEGPVSFVASITAHAGIDQKTLRFCYERLHSLMLTLEITDTDEFLHIQTICDFATL 406 (724)
Q Consensus 327 ~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~l~~l~~f~~~ 406 (724)
.+.+..+..+.+.+.+. . + ... ....+..+.+|+.
T Consensus 255 ~~~l~~l~~~~~~~~~~---~----~-----------------~~~--------------------~~~~l~~~l~~~~- 289 (540)
T 2vl7_A 255 RETNGELIVVTRAYLNI---D----E-----------------GPV--------------------KKSSLKSLLKFVE- 289 (540)
T ss_dssp HHHHHHHHHHHHHHHTT---C----C-----------------SSS--------------------CCCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHh---h----c-----------------cCc--------------------cHHHHHHHHHHHH-
Confidence 11111111111111100 0 0 000 0011122222221
Q ss_pred hcccCCCeEEEEecCCCCCCCCCCCeEEEEecCccccchHHhhccCeEEEecCCCCCc----cchhhhhCCCCccccccc
Q 004910 407 VGTYTRGFSIIIEPFDERMPHIPDPVLQLSCHDASLAVKPVFDRFQSVVITSGTLSPI----DLYPRLLNFHPVVSRSFK 482 (724)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~s~~l~~l~~~~~s~Il~SaTL~~~----~~~~~~lg~~~~~~~~~~ 482 (724)
. ++.++|. . ..+.+.|.++...+.+.++...++|||||||+|. +.|. ..+.
T Consensus 290 --~--~~~~~~~---~--------~~l~~~P~~~~~~l~~~~~~~~~~IltSATL~p~~~~~~~f~----------~~~~ 344 (540)
T 2vl7_A 290 --M--KGDLYNC---N--------GSLVKVPSDVNQLIEDALNVKTFKVLMSGTLPESLTLTNSYK----------IVVN 344 (540)
T ss_dssp --S--CCEEEEE---T--------TEEEEECSCHHHHHHHHTCCSSCEEEEESSCCTTCCCTTEEE----------EECC
T ss_pred --h--CCCEEEE---C--------CeEEEehHHHHHHHHHhcCccCCeEEEcccCCCCcccchhcC----------Cchh
Confidence 1 2344554 1 1567777777666654455556689999999993 2220 0001
Q ss_pred eeecCCceeeEEeecCCCCcceeecccCCCChHHHHHHHHHHHHHhcccCCcEEEEecChHHHHHHHHHHhhcccHHHHh
Q 004910 483 MSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM 562 (724)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~l~s~f~~~~~~~~~~~~~~~i~~~~~~~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~ 562 (724)
..+.... .++ ...++|+|++++++ + +.+++.|.+++...+||+|||||||..|+.+++.|..
T Consensus 345 ~~~g~~~---~~~-----~~~l~s~f~~r~~~-~-~~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~-------- 406 (540)
T 2vl7_A 345 ESYGRGE---YYY-----CPNVTSELRKRNSN-I-PIYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG-------- 406 (540)
T ss_dssp CC-CCCE---EEE-----CTTCCCCGGGHHHH-H-HHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--------
T ss_pred heecCCc---cee-----ccccCCCcccccCH-H-HHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--------
Confidence 1110010 111 13678999988764 5 8899999999999999999999999999999988753
Q ss_pred cCcceEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccCCCC--CceEEEEEccCCCCCccHHHHHHHHHH
Q 004910 563 QHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRH--YGRLVIMFGVPFQYTLSKILLARLEYL 640 (724)
Q Consensus 563 ~~~~i~~e~~~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~~~~--~~r~vii~glPfp~~~dp~~~~~~~~l 640 (724)
+++++|+.+ .+...++++|++ +++|||||++|+|||||||||+ .|++|||+|||||+|.||.+++|++|+
T Consensus 407 --~~~~~q~~~-~~~~~~l~~f~~-----~~~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~ 478 (540)
T 2vl7_A 407 --IPVIEENKK-TRHEEVLELMKT-----GKYLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERL 478 (540)
T ss_dssp --SCEEESTTT-CCHHHHHHHHHT-----SCCEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHH
T ss_pred --CceEecCCC-CcHHHHHHHHhc-----CCeEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHH
Confidence 468998875 467889999975 3589999999999999999998 899999999999999999999999999
Q ss_pred HHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEecccCCCcccCCC
Q 004910 641 RDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKL 693 (724)
Q Consensus 641 ~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~R~~~~~~~~~l 693 (724)
++++++++.+|..+.++++++||+||+|||++|+|+|+|+|+|+.+..|+..|
T Consensus 479 ~~~~~~~~~~~~~~~~~~~~~Q~~GR~iR~~~D~g~v~llD~R~~~~~yg~~l 531 (540)
T 2vl7_A 479 SKLTGKDEDSIIHDLTAIVIKQTIGRAFRDPNDYVKIYLCDSRYREYFADLGI 531 (540)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHHHHHCCSTTCCCEEEEESGGGGGGTTTTTC
T ss_pred HHhhCCChhHHHHHHHHHHHHHHhCCcccCCCccEEEEEEccccCcchhhccc
Confidence 99998777778788889999999999999999999999999999998887666
No 4
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.83 E-value=1.5e-18 Score=188.84 Aligned_cols=76 Identities=11% Similarity=0.037 Sum_probs=64.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++........+. +++|.+||+++..|+.++++++.
T Consensus 26 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 100 (391)
T 1xti_A 26 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV-SVLVMCHTRELAFQISKEYERFS 100 (391)
T ss_dssp HSCCSCCHHHHHHHHHHT----TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCC-CEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCe-eEEEECCCHHHHHHHHHHHHHHH
Confidence 578888999999887665 5789999999999999999999887654433345 89999999999999999998875
Q ss_pred h
Q 004910 92 N 92 (724)
Q Consensus 92 ~ 92 (724)
.
T Consensus 101 ~ 101 (391)
T 1xti_A 101 K 101 (391)
T ss_dssp T
T ss_pred h
Confidence 3
No 5
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.81 E-value=3.3e-18 Score=186.14 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=63.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
++|..|||.|.+.+..+... +++.+++.||||+|||++|++|++........++ +++|.+||+++..|+.++++.+.
T Consensus 23 ~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 99 (395)
T 3pey_A 23 MKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASP-QAICLAPSRELARQTLEVVQEMG 99 (395)
T ss_dssp TTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCc-cEEEECCCHHHHHHHHHHHHHHh
Confidence 57888999999988776532 2389999999999999999999887655433455 89999999999999999888763
No 6
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.81 E-value=5.2e-18 Score=185.30 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=63.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++........+. +++|.+||+++..|+.++++.+.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 113 (400)
T 1s2m_A 39 AGFEKPSPIQEEAIPVAI----TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKI-QALIMVPTRELALQTSQVVRTLG 113 (400)
T ss_dssp TTCCSCCHHHHHHHHHHH----HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCc-cEEEEcCCHHHHHHHHHHHHHHh
Confidence 578888999999987765 5688999999999999999999987754433345 89999999999999999988764
No 7
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.80 E-value=7.4e-18 Score=186.24 Aligned_cols=75 Identities=23% Similarity=0.246 Sum_probs=64.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCC-----CCCceEEEEccchhhHHHHHHH
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-----ENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~-----~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
++|..|+|.|.+.+..+. +++.+++.||||+|||++|++|++......+ .+. +++|.+||++|..|+.++
T Consensus 74 ~g~~~pt~iQ~~ai~~i~----~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~-~~lil~PtreLa~Q~~~~ 148 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVIS----SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRP-QVVIVSPTRELAIQIFNE 148 (434)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCC-SEEEECSSHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHh----cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCc-cEEEEecCHHHHHHHHHH
Confidence 678889999999887654 6899999999999999999999998765432 134 899999999999999999
Q ss_pred HHhhh
Q 004910 87 LKLLH 91 (724)
Q Consensus 87 l~~l~ 91 (724)
++++.
T Consensus 149 ~~~~~ 153 (434)
T 2db3_A 149 ARKFA 153 (434)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 98863
No 8
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.80 E-value=1.1e-17 Score=183.66 Aligned_cols=127 Identities=17% Similarity=0.273 Sum_probs=86.0
Q ss_pred CCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCC-chhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004910 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (724)
Q Consensus 532 ~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~ 610 (724)
++.+|||+++.+..+.+++.+.+.++ ....+.+.- ..++...+++|++ ++..||+++ ..+++|||+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~~~-------~~~~~h~~~~~~~r~~~~~~f~~----g~~~vlvaT--~~~~~Gidi 342 (417)
T 2i4i_A 276 DSLTLVFVETKKGADSLEDFLYHEGY-------ACTSIHGDRSQRDREEALHQFRS----GKSPILVAT--AVAARGLDI 342 (417)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHH----TSSCEEEEC--HHHHTTSCC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCC-------CeeEecCCCCHHHHHHHHHHHHc----CCCCEEEEC--ChhhcCCCc
Confidence 56899999999999999999876532 233343322 2356678889976 567799987 589999999
Q ss_pred CCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEecccCCC---
Q 004910 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRH--- 687 (724)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~R~~~~--- 687 (724)
|+ ++.||..++|.. .....|.+||.-|..+.--+++++++.=...
T Consensus 343 p~--v~~Vi~~~~p~s------------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~ 390 (417)
T 2i4i_A 343 SN--VKHVINFDLPSD------------------------------IEEYVHRIGRTGRVGNLGLATSFFNERNINITKD 390 (417)
T ss_dssp CC--EEEEEESSCCSS------------------------------HHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHH
T ss_pred cc--CCEEEEEcCCCC------------------------------HHHHHHhcCccccCCCCceEEEEEccccHHHHHH
Confidence 98 788998887642 1334599999999876644556666542221
Q ss_pred ------cccCCCchHHHhhccc
Q 004910 688 ------DKRSKLPGWILSHLRD 703 (724)
Q Consensus 688 ------~~~~~lp~w~~~~~~~ 703 (724)
.....+|.|+......
T Consensus 391 l~~~~~~~~~~~~~~l~~~~~~ 412 (417)
T 2i4i_A 391 LLDLLVEAKQEVPSWLENMAYE 412 (417)
T ss_dssp HHHHHHHTTCCCCHHHHHHHTC
T ss_pred HHHHHHHhcCcCCHHHHHHHHh
Confidence 0136677777654433
No 9
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.80 E-value=9.5e-18 Score=180.58 Aligned_cols=116 Identities=15% Similarity=0.182 Sum_probs=84.6
Q ss_pred HHHHHhcccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeec
Q 004910 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVAR 601 (724)
Q Consensus 523 ~i~~~~~~~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~~ 601 (724)
.+.+++...++.+|||++|.+..+.+++.+++.+. +...+.+. ...++...++.|++ ++..||+++
T Consensus 229 ~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----~~~~vlv~T-- 295 (367)
T 1hv8_A 229 ALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGF-------KAGAIHGDLSQSQREKVIRLFKQ----KKIRILIAT-- 295 (367)
T ss_dssp HHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTC-------CEEEECSSSCHHHHHHHHHHHHT----TSSSEEEEC--
T ss_pred HHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCC-------CeEEeeCCCCHHHHHHHHHHHHc----CCCeEEEEC--
Confidence 34555556778999999999999999999876532 23334332 22456667888875 567799987
Q ss_pred CcccccccCCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEe
Q 004910 602 GKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (724)
Q Consensus 602 g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD 681 (724)
..+++|+|+|+ ++.||..+.|.. .....|++||+-|...+--++++++
T Consensus 296 ~~~~~Gid~~~--~~~Vi~~~~~~s------------------------------~~~~~Q~~GR~~R~g~~g~~~~~~~ 343 (367)
T 1hv8_A 296 DVMSRGIDVND--LNCVINYHLPQN------------------------------PESYMHRIGRTGRAGKKGKAISIIN 343 (367)
T ss_dssp TTHHHHCCCSC--CSEEEESSCCSC------------------------------HHHHHHHSTTTCCSSSCCEEEEEEC
T ss_pred ChhhcCCCccc--CCEEEEecCCCC------------------------------HHHhhhcccccccCCCccEEEEEEc
Confidence 68999999998 778998887642 1234799999999877666677776
Q ss_pred cc
Q 004910 682 KR 683 (724)
Q Consensus 682 ~R 683 (724)
+.
T Consensus 344 ~~ 345 (367)
T 1hv8_A 344 RR 345 (367)
T ss_dssp TT
T ss_pred HH
Confidence 54
No 10
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=2.1e-17 Score=189.48 Aligned_cols=78 Identities=22% Similarity=0.230 Sum_probs=65.2
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCC----CCCceEEEEccchhhHHHHHHH
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~----~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
.++|..|||.|.+.+..+... +++.+++.||||+|||++|++|++....... .+. +++|.+||++|..|+.++
T Consensus 38 ~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~-~~lvl~Ptr~La~Q~~~~ 114 (579)
T 3sqw_A 38 RMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAE 114 (579)
T ss_dssp TTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC-CEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC-eEEEEcchHHHHHHHHHH
Confidence 579998999999988776521 4678999999999999999999998765542 123 899999999999999999
Q ss_pred HHhhh
Q 004910 87 LKLLH 91 (724)
Q Consensus 87 l~~l~ 91 (724)
++.+.
T Consensus 115 ~~~~~ 119 (579)
T 3sqw_A 115 VKKIH 119 (579)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88864
No 11
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.78 E-value=2.4e-17 Score=180.63 Aligned_cols=75 Identities=12% Similarity=0.096 Sum_probs=63.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++........+. +++|.+||+++..|+.++++.+.
T Consensus 55 ~g~~~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 129 (410)
T 2j0s_A 55 YGFEKPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRET-QALILAPTRELAVQIQKGLLALG 129 (410)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCc-eEEEEcCcHHHHHHHHHHHHHHh
Confidence 688889999999887765 5789999999999999999999887654333345 89999999999999999988863
No 12
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.77 E-value=9.5e-17 Score=183.56 Aligned_cols=79 Identities=22% Similarity=0.236 Sum_probs=65.1
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCC----CCCceEEEEccchhhHHHHHHH
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~----~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
.++|..+||.|.+.+..+... +++.+++.||||+|||++|++|++....... .+. +++|.+||++|..|+.++
T Consensus 89 ~~g~~~~~~~Q~~~i~~~l~~--~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~-~~lil~Ptr~La~Q~~~~ 165 (563)
T 3i5x_A 89 RMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV-KAVIVAPTRDLALQIEAE 165 (563)
T ss_dssp TTCCSSCCHHHHHHHHHHHSS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC-CEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCe-eEEEEcCcHHHHHHHHHH
Confidence 378998999999988766521 4579999999999999999999998876542 123 899999999999999999
Q ss_pred HHhhhh
Q 004910 87 LKLLHN 92 (724)
Q Consensus 87 l~~l~~ 92 (724)
++.+..
T Consensus 166 ~~~~~~ 171 (563)
T 3i5x_A 166 VKKIHD 171 (563)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888643
No 13
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.76 E-value=7.2e-17 Score=176.74 Aligned_cols=78 Identities=15% Similarity=0.113 Sum_probs=64.5
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.++|..|||.|.+.+..+... .++++++.||||+|||++|++|++........+. +++|.+||+++..|+.+.++.+
T Consensus 42 ~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 118 (412)
T 3fht_A 42 AMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQM 118 (412)
T ss_dssp HTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCC-CEEEECCCHHHHHHHHHHHHHH
Confidence 368888999999988776632 2489999999999999999999887665444445 8999999999999999888876
Q ss_pred h
Q 004910 91 H 91 (724)
Q Consensus 91 ~ 91 (724)
.
T Consensus 119 ~ 119 (412)
T 3fht_A 119 G 119 (412)
T ss_dssp T
T ss_pred H
Confidence 4
No 14
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.74 E-value=8e-17 Score=176.58 Aligned_cols=76 Identities=13% Similarity=0.079 Sum_probs=64.7
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++........+. +++|.+||+++..|+.++++.+
T Consensus 57 ~~~~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 131 (414)
T 3eiq_A 57 AYGFEKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDLKAT-QALVLAPTRELAQQIQKVVMAL 131 (414)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCce-eEEEEeChHHHHHHHHHHHHHH
Confidence 3788889999999887665 5788999999999999999999987765443455 8999999999999999998886
Q ss_pred h
Q 004910 91 H 91 (724)
Q Consensus 91 ~ 91 (724)
.
T Consensus 132 ~ 132 (414)
T 3eiq_A 132 G 132 (414)
T ss_dssp G
T ss_pred h
Confidence 4
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.74 E-value=4.5e-16 Score=177.48 Aligned_cols=70 Identities=24% Similarity=0.246 Sum_probs=61.7
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHh
Q 004910 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 10 ~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
-.|+|..+||.|.+.+..+. +++.+++.||||+|||++|++|++. .++ +++|.+||++|..|.++.++.
T Consensus 38 ~~fg~~~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpal~------~~g-~~lVisP~~~L~~q~~~~l~~ 106 (591)
T 2v1x_A 38 NVFKLEKFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPALC------SDG-FTLVICPLISLMEDQLMVLKQ 106 (591)
T ss_dssp HTSCCCSCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHHHT------SSS-EEEEECSCHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHHHH------cCC-cEEEEeCHHHHHHHHHHHHHh
Confidence 45999999999999988765 5789999999999999999999874 135 899999999999999998887
Q ss_pred h
Q 004910 90 L 90 (724)
Q Consensus 90 l 90 (724)
+
T Consensus 107 ~ 107 (591)
T 2v1x_A 107 L 107 (591)
T ss_dssp H
T ss_pred c
Confidence 5
No 16
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.74 E-value=1.5e-16 Score=169.04 Aligned_cols=70 Identities=17% Similarity=0.141 Sum_probs=61.1
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.++|..+||.|.+.+..+. +++.+++.||||+|||++|+.|++.. +. +++|.+||+++..|+.++++.+
T Consensus 11 ~~g~~~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~------~~-~~liv~P~~~L~~q~~~~~~~~ 79 (337)
T 2z0m_A 11 EMGFKNFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL------GM-KSLVVTPTRELTRQVASHIRDI 79 (337)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH------TC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh------cC-CEEEEeCCHHHHHHHHHHHHHH
Confidence 4789989999999887655 67899999999999999999997652 35 8999999999999999998876
Q ss_pred h
Q 004910 91 H 91 (724)
Q Consensus 91 ~ 91 (724)
.
T Consensus 80 ~ 80 (337)
T 2z0m_A 80 G 80 (337)
T ss_dssp T
T ss_pred h
Confidence 3
No 17
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.73 E-value=1.1e-17 Score=182.06 Aligned_cols=75 Identities=13% Similarity=0.116 Sum_probs=64.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++........++ +++|.+||+++..|+.+++..+.
T Consensus 39 ~g~~~~~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~-~~lil~P~~~L~~q~~~~~~~~~ 113 (394)
T 1fuu_A 39 YGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP-QALMLAPTRELALQIQKVVMALA 113 (394)
T ss_dssp HTCCSCCHHHHHHHHHHH----HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCC-CEEEEcCCHHHHHHHHHHHHHHh
Confidence 578889999999887765 5688999999999999999999987765443455 89999999999999999988764
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.72 E-value=8.6e-16 Score=173.27 Aligned_cols=71 Identities=21% Similarity=0.305 Sum_probs=61.7
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHH
Q 004910 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (724)
Q Consensus 9 ~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~ 88 (724)
.-.|+|..+||.|.+.+..+. +++.+++.||||+|||++|++|++.. .+ +++|.+||++|..|.++.++
T Consensus 18 ~~~~g~~~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l~~------~g-~~lvi~P~~aL~~q~~~~l~ 86 (523)
T 1oyw_A 18 QETFGYQQFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPALLL------NG-LTVVVSPLISLMKDQVDQLQ 86 (523)
T ss_dssp HHTTCCSSCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHS------SS-EEEEECSCHHHHHHHHHHHH
T ss_pred HHHhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHHHHh------CC-CEEEECChHHHHHHHHHHHH
Confidence 346999999999999887765 67899999999999999999998742 35 89999999999999999887
Q ss_pred hh
Q 004910 89 LL 90 (724)
Q Consensus 89 ~l 90 (724)
.+
T Consensus 87 ~~ 88 (523)
T 1oyw_A 87 AN 88 (523)
T ss_dssp HT
T ss_pred Hc
Confidence 64
No 19
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.72 E-value=7.3e-16 Score=169.22 Aligned_cols=72 Identities=22% Similarity=0.149 Sum_probs=61.7
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHh
Q 004910 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 10 ~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
-.|||+ |+|.|.+.+..+. +++++++.||||+|||++|+.|++.... .++ +++|.+||++|..|+.++++.
T Consensus 16 ~~~~~~-~~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~l~~~~~~~~---~~~-~~lil~Pt~~L~~q~~~~~~~ 86 (414)
T 3oiy_A 16 KKFGKD-LTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLAR---KGK-KSALVFPTVTLVKQTLERLQK 86 (414)
T ss_dssp HHHSSC-CCHHHHHHHHHHT----TTCCEECCSCSSSSHHHHHHHHHHHHHT---TTC-CEEEEESSHHHHHHHHHHHHH
T ss_pred HhcCCC-CCHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHhc---CCC-EEEEEECCHHHHHHHHHHHHH
Confidence 347886 5999999887765 5789999999999999999999877652 245 899999999999999999988
Q ss_pred h
Q 004910 90 L 90 (724)
Q Consensus 90 l 90 (724)
+
T Consensus 87 ~ 87 (414)
T 3oiy_A 87 L 87 (414)
T ss_dssp H
T ss_pred H
Confidence 6
No 20
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.69 E-value=7.3e-17 Score=181.83 Aligned_cols=76 Identities=16% Similarity=0.108 Sum_probs=61.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.+|..|||.|.+.+..+.+. .++++++.||||+|||++|+.|++........++ +++|.+||+++..|+.++++.+
T Consensus 137 ~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~-~vLvl~P~~~L~~Q~~~~~~~~ 212 (508)
T 3fho_A 137 XXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKP-QAICLAPSRELARQIMDVVTEM 212 (508)
T ss_dssp --CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCc-eEEEEECcHHHHHHHHHHHHHh
Confidence 35666899999988766532 2489999999999999999999887655443345 8999999999999999988876
No 21
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.67 E-value=1.5e-14 Score=161.24 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
.+||.|.+.+..+.+ + .+++.+|||+|||++++.+++..... .++ +++|.+||+++..|+.+++.++.
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~-~~liv~P~~~L~~q~~~~~~~~~ 76 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGG-KVLMLAPTKPLVLQHAESFRRLF 76 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH--SCS-CEEEECSSHHHHHHHHHHHHHHB
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCC-eEEEEECCHHHHHHHHHHHHHHh
Confidence 369999998877653 3 99999999999999999998776552 245 89999999999999999998863
No 22
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.65 E-value=1.3e-14 Score=170.47 Aligned_cols=73 Identities=26% Similarity=0.241 Sum_probs=61.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
+||..++|.|.+.+..+ +.+++++++.||||+|||+++..|++...... ++ +++|.+||+++..|+.++++++
T Consensus 26 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~-~il~i~P~r~La~q~~~~~~~~ 98 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKG---LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GG-KAIYVTPLRALTNEKYLTFKDW 98 (715)
T ss_dssp TSCCBCCHHHHHHHHTT---TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CS-EEEEECSCHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CC-eEEEEeCcHHHHHHHHHHHHHh
Confidence 78988899999988752 34688999999999999999999988765433 46 9999999999999999988654
No 23
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.60 E-value=1.4e-13 Score=167.92 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=67.8
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhCC--cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHH
Q 004910 9 TVYFPYDNIYPEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 9 ~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~--~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
...|||+. ||.|.+.+..+.+.+.+++ ..++.||||+|||++++.+++.... .++ +++|.+||.++..|+.++
T Consensus 597 ~~~f~~~~-t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~-~vlvlvPt~~La~Q~~~~ 671 (1151)
T 2eyq_A 597 CDSFPFET-TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHK-QVAVLVPTTLLAQQHYDN 671 (1151)
T ss_dssp HHTCCSCC-CHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTC-EEEEECSSHHHHHHHHHH
T ss_pred HHhCCCCC-CHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCC-eEEEEechHHHHHHHHHH
Confidence 45699985 9999999999999998886 8999999999999999988876553 256 999999999999999999
Q ss_pred HHhh
Q 004910 87 LKLL 90 (724)
Q Consensus 87 l~~l 90 (724)
+...
T Consensus 672 ~~~~ 675 (1151)
T 2eyq_A 672 FRDR 675 (1151)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8865
No 24
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.60 E-value=3.4e-14 Score=166.51 Aligned_cols=72 Identities=18% Similarity=0.205 Sum_probs=58.8
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.+||..+||.|.+.+..+. +++++++.||||+|||+++..|++..... ++ +++|.+||+++..|+.++++++
T Consensus 20 ~~g~~~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~---~~-~~l~i~P~r~La~q~~~~~~~~ 91 (702)
T 2p6r_A 20 EEGIEELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK---GG-KSLYVVPLRALAGEKYESFKKW 91 (702)
T ss_dssp CC---CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT---TC-CEEEEESSHHHHHHHHHHHTTT
T ss_pred hCCCCCCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh---CC-cEEEEeCcHHHHHHHHHHHHHH
Confidence 3789888999999887743 58899999999999999999998866532 45 8999999999999999988654
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.59 E-value=1.2e-13 Score=167.46 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=63.7
Q ss_pred ceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHH
Q 004910 7 DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 7 ~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
++...|||+ ++|.|.+.+..+ .+++.+++.||||+|||++|++|++..... ++ +++|.+||++|..|+.++
T Consensus 176 ~~~~~~~f~-ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~-rvlvl~PtraLa~Q~~~~ 246 (1108)
T 3l9o_A 176 NEARTYPFT-LDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQ-RVIYTSPIKALSNQKYRE 246 (1108)
T ss_dssp SCSSCCSSC-CCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TC-EEEEEESSHHHHHHHHHH
T ss_pred HHHHhCCCC-CCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHhc---CC-eEEEEcCcHHHHHHHHHH
Confidence 345678998 599999987765 578899999999999999999998876532 46 999999999999999999
Q ss_pred HHhh
Q 004910 87 LKLL 90 (724)
Q Consensus 87 l~~l 90 (724)
+..+
T Consensus 247 l~~~ 250 (1108)
T 3l9o_A 247 LLAE 250 (1108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 26
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.58 E-value=4.1e-14 Score=170.19 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=62.3
Q ss_pred ceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHH
Q 004910 7 DVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 7 ~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
.....|||+ ++|.|.+.+..+ .+++.+++.||||+|||++|++|+..... .+. +++|.+||++|..|+.++
T Consensus 31 ~~~~~~~f~-l~~~Q~~aI~~i----l~g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~-~vlvl~PtraLa~Q~~~~ 101 (997)
T 4a4z_A 31 NPARSWPFE-LDTFQKEAVYHL----EQGDSVFVAAHTSAGKTVVAEYAIAMAHR---NMT-KTIYTSPIKALSNQKFRD 101 (997)
T ss_dssp SCSCCCSSC-CCHHHHHHHHHH----HTTCEEEEECCTTSCSHHHHHHHHHHHHH---TTC-EEEEEESCGGGHHHHHHH
T ss_pred hHHHhCCCC-CCHHHHHHHHHH----HcCCCEEEEECCCCcHHHHHHHHHHHHHh---cCC-eEEEEeCCHHHHHHHHHH
Confidence 345679998 499999887655 46789999999999999999998766543 245 899999999999999998
Q ss_pred HHhh
Q 004910 87 LKLL 90 (724)
Q Consensus 87 l~~l 90 (724)
+...
T Consensus 102 l~~~ 105 (997)
T 4a4z_A 102 FKET 105 (997)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 8864
No 27
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.7e-13 Score=164.93 Aligned_cols=73 Identities=19% Similarity=0.241 Sum_probs=62.2
Q ss_pred eeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHH
Q 004910 9 TVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (724)
Q Consensus 9 ~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~ 88 (724)
...|||+ ++|.|.+.+..+ .+++.+++.||||+|||++|++|++.... .++ +++|.+||++|..|+.+++.
T Consensus 80 ~~~~~f~-L~~~Q~eai~~l----~~g~~vLV~apTGSGKTlva~lai~~~l~---~g~-rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPFT-LDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLK---NKQ-RVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSSC-CCHHHHHHHHHH----HHTCEEEEECCTTSCHHHHHHHHHHHHHH---TTC-EEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCCC-CCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHhc---cCC-eEEEECChHHHHHHHHHHHH
Confidence 4568998 699999988765 46789999999999999999988776553 246 99999999999999999988
Q ss_pred hh
Q 004910 89 LL 90 (724)
Q Consensus 89 ~l 90 (724)
..
T Consensus 151 ~~ 152 (1010)
T 2xgj_A 151 AE 152 (1010)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 28
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.57 E-value=5.2e-14 Score=165.39 Aligned_cols=73 Identities=19% Similarity=0.268 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
+||..+||.|.+.+..+ +.+++++++.||||+|||+++.+|++...... ++ +++|.+||+++..|+.++++++
T Consensus 19 ~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~-~~l~i~P~raLa~q~~~~~~~l 91 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ--GG-KAVYIVPLKALAEEKFQEFQDW 91 (720)
T ss_dssp TTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CS-EEEEECSSGGGHHHHHHHTGGG
T ss_pred CCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CC-EEEEEcCcHHHHHHHHHHHHHH
Confidence 78988899999988752 34589999999999999999999988665432 46 9999999999999999988654
No 29
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.56 E-value=4e-13 Score=154.33 Aligned_cols=129 Identities=14% Similarity=0.139 Sum_probs=83.6
Q ss_pred HHHHHHHHHhcc--cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCc-ceEEeCCCchh-HHHHHHHHHHhccCCCCe
Q 004910 519 NYGKLLVEMVSI--VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHK-LVFIETQDVVE-TTLALDNYRKACDCGRGA 594 (724)
Q Consensus 519 ~~~~~i~~~~~~--~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~-~i~~e~~~~~~-~~~~~~~f~~~~~~~~~~ 594 (724)
.+++.+.+.+.. ..+.+|||+++....+.+++.+.+.+....-.... ...+.+. ..+ ...++++|++. +..-..
T Consensus 424 ~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~-~~~~r~~~l~~F~~~-~~~~~~ 501 (590)
T 3h1t_A 424 AFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSE-EGKIGKGHLSRFQEL-ETSTPV 501 (590)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSST-THHHHHHHHHHHHCT-TCCCCC
T ss_pred HHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCC-ChHHHHHHHHHHhCC-CCCCCE
Confidence 344455444443 23689999999999999999987643211000011 1223333 333 67789999862 011223
Q ss_pred EEEEeecCcccccccCCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCC--
Q 004910 595 VFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKA-- 672 (724)
Q Consensus 595 vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~-- 672 (724)
||+++ ..+.+|||+|+ ++.||+.+.|.. .....|++||.-|...
T Consensus 502 ilvtt--~~l~~GiDip~--v~~Vi~~~~~~s------------------------------~~~~~Q~iGR~~R~~~~~ 547 (590)
T 3h1t_A 502 ILTTS--QLLTTGVDAPT--CKNVVLARVVNS------------------------------MSEFKQIVGRGTRLREDY 547 (590)
T ss_dssp EEEES--STTTTTCCCTT--EEEEEEESCCCC------------------------------HHHHHHHHTTSCCCBGGG
T ss_pred EEEEC--ChhhcCccchh--eeEEEEEecCCC------------------------------hHHHHHHHhhhcccCccC
Confidence 77765 57899999997 788998886642 2346799999999876
Q ss_pred CeEEEEEEecc
Q 004910 673 DYGMMIFADKR 683 (724)
Q Consensus 673 D~g~vvllD~R 683 (724)
+...++++|-.
T Consensus 548 ~k~~~~I~D~~ 558 (590)
T 3h1t_A 548 GKLWFNIIDYT 558 (590)
T ss_dssp TBSCEEEEECS
T ss_pred CCCEEEEEecC
Confidence 56678888865
No 30
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.55 E-value=1.6e-13 Score=154.80 Aligned_cols=70 Identities=14% Similarity=0.110 Sum_probs=58.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 13 p~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
+++ +||.|.+.+..+.+ ++.+++.+|||+|||++++.++....... +. +++|.+||++|..|+.+++.++
T Consensus 111 ~~~-l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~-~vlvl~P~~~L~~Q~~~~~~~~ 180 (510)
T 2oca_A 111 RIE-PHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EG-KILIIVPTTALTTQMADDFVDY 180 (510)
T ss_dssp EEC-CCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC--SS-EEEEEESSHHHHHHHHHHHHHT
T ss_pred CCC-CCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CC-eEEEEECcHHHHHHHHHHHHHh
Confidence 455 69999999887764 47899999999999999999887665432 34 8999999999999999998875
No 31
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.54 E-value=3.7e-13 Score=169.13 Aligned_cols=72 Identities=19% Similarity=0.241 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 14 ~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
|..+.|.|.+....++ ..++++++.||||+|||+++.+|++......+ +. +++|.+||++|..|..+++...
T Consensus 924 f~~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~-kavyi~P~raLa~q~~~~~~~~ 995 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EG-RCVYITPMEALAEQVYMDWYEK 995 (1724)
T ss_dssp CSBCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CC-EEEEEcChHHHHHHHHHHHHHH
Confidence 5557899999776654 56789999999999999999999887765543 45 8999999999999999998753
No 32
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.54 E-value=2.3e-14 Score=141.20 Aligned_cols=76 Identities=16% Similarity=0.029 Sum_probs=64.5
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.++|..|||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||+++..|+.++++.+
T Consensus 20 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 94 (206)
T 1vec_A 20 EMGWEKPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNI-QAMVIVPTRELALQVSQICIQV 94 (206)
T ss_dssp TTTCCSCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSC-CEEEECSCHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCe-eEEEEeCcHHHHHHHHHHHHHH
Confidence 3788889999999887665 6789999999999999999999987654433345 8999999999999999998876
Q ss_pred h
Q 004910 91 H 91 (724)
Q Consensus 91 ~ 91 (724)
.
T Consensus 95 ~ 95 (206)
T 1vec_A 95 S 95 (206)
T ss_dssp T
T ss_pred H
Confidence 4
No 33
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.54 E-value=1.8e-14 Score=144.50 Aligned_cols=74 Identities=20% Similarity=0.042 Sum_probs=61.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhC------CCCCceEEEEccchhhHHHHHH
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK------PENPVKLIYCTRTVHEMEKTLA 85 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~------~~~~~~vvi~T~T~~l~~Q~~~ 85 (724)
++|..|||.|.+.+..+. +++++++.||||+|||++|++|++...... ..+. +++|.+||+++..|+.+
T Consensus 38 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~ 112 (228)
T 3iuy_A 38 VGILKPTPIQSQAWPIIL----QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGP-GMLVLTPTRELALHVEA 112 (228)
T ss_dssp HTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCC-SEEEECSSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCC-cEEEEeCCHHHHHHHHH
Confidence 578888999999886655 678999999999999999999988765421 1245 89999999999999999
Q ss_pred HHHhh
Q 004910 86 ELKLL 90 (724)
Q Consensus 86 el~~l 90 (724)
+++.+
T Consensus 113 ~~~~~ 117 (228)
T 3iuy_A 113 ECSKY 117 (228)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98886
No 34
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.54 E-value=1.7e-14 Score=144.25 Aligned_cols=76 Identities=13% Similarity=0.097 Sum_probs=64.6
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.++|..+||.|.+.+..+. +++++++.||||+|||++|++|++.+......+. +++|.+||+++..|+.++++.+
T Consensus 31 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 105 (224)
T 1qde_A 31 GYGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAP-QALMLAPTRELALQIQKVVMAL 105 (224)
T ss_dssp HHTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCc-eEEEEECCHHHHHHHHHHHHHH
Confidence 3578888999999887665 5789999999999999999999988765444445 8999999999999999998876
Q ss_pred h
Q 004910 91 H 91 (724)
Q Consensus 91 ~ 91 (724)
.
T Consensus 106 ~ 106 (224)
T 1qde_A 106 A 106 (224)
T ss_dssp T
T ss_pred h
Confidence 4
No 35
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.53 E-value=2.7e-14 Score=144.70 Aligned_cols=77 Identities=13% Similarity=0.007 Sum_probs=64.9
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCC-----CCCceEEEEccchhhHHHHHH
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-----ENPVKLIYCTRTVHEMEKTLA 85 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~-----~~~~~vvi~T~T~~l~~Q~~~ 85 (724)
.++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++......+ .+. +++|.+||+++..|+.+
T Consensus 46 ~~g~~~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~-~~lil~Pt~~L~~Q~~~ 120 (242)
T 3fe2_A 46 RQNFTEPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP-ICLVLAPTRELAQQVQQ 120 (242)
T ss_dssp TTTCCSCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC-SEEEECSSHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC-EEEEEeCcHHHHHHHHH
Confidence 3688889999999987765 6789999999999999999999998765421 244 89999999999999999
Q ss_pred HHHhhhh
Q 004910 86 ELKLLHN 92 (724)
Q Consensus 86 el~~l~~ 92 (724)
.++.+..
T Consensus 121 ~~~~~~~ 127 (242)
T 3fe2_A 121 VAAEYCR 127 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8887643
No 36
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.53 E-value=8.1e-14 Score=169.03 Aligned_cols=71 Identities=14% Similarity=0.065 Sum_probs=61.3
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.|+|. | |.|.+.+..+. +++++++.||||+|||+ |++|++...... +. +++|.+||++|..|+.+.++.+
T Consensus 53 ~~g~~-p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl-~~lp~l~~~~~~--~~-~~lil~PtreLa~Q~~~~l~~l 122 (1054)
T 1gku_B 53 CVGEP-R-AIQKMWAKRIL----RKESFAATAPTGVGKTS-FGLAMSLFLALK--GK-RCYVIFPTSLLVIQAAETIRKY 122 (1054)
T ss_dssp TTCSC-C-HHHHHHHHHHH----TTCCEECCCCBTSCSHH-HHHHHHHHHHTT--SC-CEEEEESCHHHHHHHHHHHHHH
T ss_pred hcCCC-H-HHHHHHHHHHH----hCCCEEEEcCCCCCHHH-HHHHHHHHHhhc--CC-eEEEEeccHHHHHHHHHHHHHH
Confidence 58898 8 99999887766 67899999999999998 888888776543 45 8999999999999999998887
Q ss_pred h
Q 004910 91 H 91 (724)
Q Consensus 91 ~ 91 (724)
.
T Consensus 123 ~ 123 (1054)
T 1gku_B 123 A 123 (1054)
T ss_dssp H
T ss_pred H
Confidence 4
No 37
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.52 E-value=5.2e-14 Score=143.20 Aligned_cols=76 Identities=17% Similarity=0.043 Sum_probs=65.6
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.++|..+||.|.+.+..+. +++.+++.||||+|||++|++|++......+.+. +++|.+||+++..|+.++++++
T Consensus 60 ~~g~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~-~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 60 QLGWTKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRL-FALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSS-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 4788889999999887665 6789999999999999999999988766554445 8999999999999999998886
Q ss_pred h
Q 004910 91 H 91 (724)
Q Consensus 91 ~ 91 (724)
.
T Consensus 135 ~ 135 (249)
T 3ber_A 135 G 135 (249)
T ss_dssp H
T ss_pred h
Confidence 4
No 38
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.52 E-value=3.7e-14 Score=142.53 Aligned_cols=76 Identities=11% Similarity=0.101 Sum_probs=64.2
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.++|..|||.|.+.+..+. +++++++.||||+|||++|++|++........+. +++|.+||+++..|+.++++.+
T Consensus 41 ~~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 115 (230)
T 2oxc_A 41 AAGFERPSPVQLKAIPLGR----CGLDLIVQAKSGTGKTCVFSTIALDSLVLENLST-QILILAPTREIAVQIHSVITAI 115 (230)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 3678888999999887654 5789999999999999999999887654433345 8999999999999999998876
Q ss_pred h
Q 004910 91 H 91 (724)
Q Consensus 91 ~ 91 (724)
.
T Consensus 116 ~ 116 (230)
T 2oxc_A 116 G 116 (230)
T ss_dssp T
T ss_pred h
Confidence 3
No 39
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.52 E-value=6.6e-14 Score=142.77 Aligned_cols=75 Identities=21% Similarity=0.219 Sum_probs=63.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCC---------CCCceEEEEccchhhHHH
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP---------ENPVKLIYCTRTVHEMEK 82 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~---------~~~~~vvi~T~T~~l~~Q 82 (724)
++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++....... .+. +++|.+||+++..|
T Consensus 41 ~g~~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q 115 (253)
T 1wrb_A 41 ASYQRPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP-KCLILAPTRELAIQ 115 (253)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC-SEEEECSSHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc-eEEEEECCHHHHHH
Confidence 578889999999987765 5789999999999999999999988764321 124 89999999999999
Q ss_pred HHHHHHhhh
Q 004910 83 TLAELKLLH 91 (724)
Q Consensus 83 ~~~el~~l~ 91 (724)
+.++++.+.
T Consensus 116 ~~~~~~~~~ 124 (253)
T 1wrb_A 116 ILSESQKFS 124 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999988864
No 40
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.52 E-value=1.6e-14 Score=146.65 Aligned_cols=75 Identities=19% Similarity=0.143 Sum_probs=63.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCC-CCCceEEEEccchhhHHHHHHHHHhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP-ENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~-~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.+|..|||.|.+.+..+. +++.+++.||||+|||++|++|++....... .+. +++|.+||+++..|+.++++.+
T Consensus 47 ~g~~~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 121 (245)
T 3dkp_A 47 AGFQMPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGF-RALIISPTRELASQIHRELIKI 121 (245)
T ss_dssp TTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCc-eEEEEeCCHHHHHHHHHHHHHH
Confidence 578888999999887655 5788999999999999999999988765322 234 8999999999999999998886
Q ss_pred h
Q 004910 91 H 91 (724)
Q Consensus 91 ~ 91 (724)
.
T Consensus 122 ~ 122 (245)
T 3dkp_A 122 S 122 (245)
T ss_dssp T
T ss_pred h
Confidence 4
No 41
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.50 E-value=6.4e-14 Score=139.63 Aligned_cols=75 Identities=11% Similarity=0.034 Sum_probs=63.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++........+. +++|.+||+++..|+.++++++.
T Consensus 32 ~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~~ 106 (220)
T 1t6n_A 32 CGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV-SVLVMCHTRELAFQISKEYERFS 106 (220)
T ss_dssp TTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCC-CEEEECSCHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCE-EEEEEeCCHHHHHHHHHHHHHHH
Confidence 688888999999987765 4688999999999999999999987754433334 89999999999999999998874
No 42
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.50 E-value=1.1e-12 Score=165.00 Aligned_cols=77 Identities=21% Similarity=0.235 Sum_probs=63.1
Q ss_pred eCC-CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhC--------CCCCceEEEEccchhhHH
Q 004910 11 YFP-YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK--------PENPVKLIYCTRTVHEME 81 (724)
Q Consensus 11 ~Fp-~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~--------~~~~~~vvi~T~T~~l~~ 81 (724)
.|| |+.+.|.|.+.... ++.+++++++.||||+|||+++.+|++...... ..+. +++|.+||++|..
T Consensus 73 ~f~g~~~ln~iQs~~~~~---al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~-k~lyiaP~kALa~ 148 (1724)
T 4f92_B 73 GFEGFKTLNRIQSKLYRA---ALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDF-KIIYIAPMRSLVQ 148 (1724)
T ss_dssp TCTTCSBCCHHHHHTHHH---HHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSC-EEEEECSSHHHHH
T ss_pred hcCCCCCCCHHHHHHHHH---HHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCC-EEEEECCHHHHHH
Confidence 365 88899999996654 567789999999999999999999988765432 1245 8999999999999
Q ss_pred HHHHHHHhhh
Q 004910 82 KTLAELKLLH 91 (724)
Q Consensus 82 Q~~~el~~l~ 91 (724)
|..+++....
T Consensus 149 e~~~~l~~~~ 158 (1724)
T 4f92_B 149 EMVGSFGKRL 158 (1724)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987653
No 43
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.49 E-value=4.1e-14 Score=140.96 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=65.2
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++........+. +++|.+||+++..|+.++++++
T Consensus 21 ~~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 95 (219)
T 1q0u_A 21 TLRFYKPTEIQERIIPGAL----RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEV-QAVITAPTRELATQIYHETLKI 95 (219)
T ss_dssp HTTCCSCCHHHHHHHHHHH----HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCc-eEEEEcCcHHHHHHHHHHHHHH
Confidence 3678888999999987665 5689999999999999999999988765433345 8999999999999999998887
Q ss_pred hh
Q 004910 91 HN 92 (724)
Q Consensus 91 ~~ 92 (724)
..
T Consensus 96 ~~ 97 (219)
T 1q0u_A 96 TK 97 (219)
T ss_dssp HT
T ss_pred hh
Confidence 53
No 44
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.49 E-value=1.4e-13 Score=135.70 Aligned_cols=75 Identities=20% Similarity=0.115 Sum_probs=62.9
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhC---CCCCceEEEEccchhhHHHHHHHH
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---PENPVKLIYCTRTVHEMEKTLAEL 87 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~---~~~~~~vvi~T~T~~l~~Q~~~el 87 (724)
.++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++...... ..+. +++|.+||+++..|+.+++
T Consensus 18 ~~~~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~-~~lil~P~~~L~~q~~~~~ 92 (207)
T 2gxq_A 18 GRGLTTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKP-RALVLTPTRELALQVASEL 92 (207)
T ss_dssp HTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCC-SEEEECSSHHHHHHHHHHH
T ss_pred HcCCCCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCC-cEEEEECCHHHHHHHHHHH
Confidence 3678888999999887655 578999999999999999999988765421 1244 8999999999999999998
Q ss_pred Hhh
Q 004910 88 KLL 90 (724)
Q Consensus 88 ~~l 90 (724)
+.+
T Consensus 93 ~~~ 95 (207)
T 2gxq_A 93 TAV 95 (207)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 45
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.48 E-value=1e-13 Score=139.76 Aligned_cols=76 Identities=17% Similarity=0.097 Sum_probs=63.5
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhC----CCCCceEEEEccchhhHHHHHHH
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK----PENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~----~~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
.++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++...... ..+. +++|.+||+++..|+.++
T Consensus 42 ~~~~~~~~~~Q~~~i~~~~----~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~-~~lil~Pt~~L~~q~~~~ 116 (236)
T 2pl3_A 42 EAQYRLVTEIQKQTIGLAL----QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGL-GVLIISPTRELAYQTFEV 116 (236)
T ss_dssp HTTCCBCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCC-CEEEECSSHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCc-eEEEEeCCHHHHHHHHHH
Confidence 3678889999999887654 678999999999999999999998775432 1235 899999999999999999
Q ss_pred HHhhh
Q 004910 87 LKLLH 91 (724)
Q Consensus 87 l~~l~ 91 (724)
++.+.
T Consensus 117 ~~~~~ 121 (236)
T 2pl3_A 117 LRKVG 121 (236)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 88763
No 46
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.46 E-value=2.9e-12 Score=155.44 Aligned_cols=71 Identities=23% Similarity=0.165 Sum_probs=60.6
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.+||+ |+|.|.+.+..+. +++.+++.||||+|||++||.|++..+ ..+. +++|.+||++|..|+.+.++.+
T Consensus 74 ~~gf~-pt~iQ~~ai~~il----~g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~-~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGKD-LTGYQRLWAKRIV----QGKSFTMVAPTGVGKTTFGMMTALWLA---RKGK-KSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSSC-CCHHHHHHHHHHT----TTCCEEECCSTTCCHHHHHHHHHHHHH---TTTC-CEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCCC-CCHHHHHHHHHHH----cCCCEEEEeCCCCcHHHHHHHHHHHHH---hcCC-eEEEEechHHHHHHHHHHHHHh
Confidence 47886 6999999887765 578999999999999999998877655 2245 8999999999999999998885
No 47
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.46 E-value=1.2e-13 Score=139.53 Aligned_cols=76 Identities=12% Similarity=0.073 Sum_probs=64.2
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.++|..|||.|.+.+..+. +++.+++.||||+|||++|++|++........+. +++|.+||+++..|+.++++.+
T Consensus 47 ~~g~~~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~-~~lil~Pt~~L~~q~~~~~~~~ 121 (237)
T 3bor_A 47 AYGFEKPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEFKET-QALVLAPTRELAQQIQKVILAL 121 (237)
T ss_dssp HHTCCSCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCc-eEEEEECcHHHHHHHHHHHHHH
Confidence 3678888999999887765 5789999999999999999999987654333345 8999999999999999998886
Q ss_pred h
Q 004910 91 H 91 (724)
Q Consensus 91 ~ 91 (724)
.
T Consensus 122 ~ 122 (237)
T 3bor_A 122 G 122 (237)
T ss_dssp T
T ss_pred h
Confidence 4
No 48
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.45 E-value=2.2e-13 Score=139.66 Aligned_cols=75 Identities=21% Similarity=0.210 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCC----CCCceEEEEccchhhHHHHHHHH
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAEL 87 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~----~~~~~vvi~T~T~~l~~Q~~~el 87 (724)
++|..+||.|.+++..+. +++.+++.||||+|||++|++|++....... .+. +++|.+||++|..|+.+++
T Consensus 72 ~g~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~-~~lil~Pt~~La~q~~~~~ 146 (262)
T 3ly5_A 72 MGFTNMTEIQHKSIRPLL----EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGT-GVLILSPTRELAMQTFGVL 146 (262)
T ss_dssp TTCCBCCHHHHHHHHHHH----HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCC-CEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHh----CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCc-eEEEEeCCHHHHHHHHHHH
Confidence 578888999999987765 4688999999999999999999987765421 244 8999999999999999999
Q ss_pred Hhhh
Q 004910 88 KLLH 91 (724)
Q Consensus 88 ~~l~ 91 (724)
+.+.
T Consensus 147 ~~~~ 150 (262)
T 3ly5_A 147 KELM 150 (262)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8864
No 49
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.40 E-value=1.4e-12 Score=144.39 Aligned_cols=118 Identities=14% Similarity=0.053 Sum_probs=78.2
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~ 610 (724)
.++.+|||++|....+.+++.+++.++ ....+.+ + .....++.|++ |+..||+++ ..+.+|||+
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~-------~~~~lh~-~--~~~~~~~~f~~----g~~~vLVaT--~v~~~GiDi 250 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGK-------RVIQLSR-K--TFDTEYPKTKL----TDWDFVVTT--DISEMGANF 250 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC-------CEEEECT-T--THHHHGGGGGS----SCCSEEEEC--GGGGSSCCC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCC-------eEEECCH-H--HHHHHHHhhcc----CCceEEEEC--CHHHhCcCC
Confidence 478999999999999999999986532 2222323 2 23456666653 677899987 589999999
Q ss_pred CCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCccc----HHHHHHHHHHhhcccccCCCCeEEEEEEe
Q 004910 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFL----TFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (724)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~----~~~a~~~v~Q~~GR~iR~~~D~g~vvllD 681 (724)
|+ +.||-.|+++....| +. ...... .|.......|.+||.=|...+.|..+++.
T Consensus 251 p~---~~VI~~~~~~~~~~d-------------~~-~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~ 308 (451)
T 2jlq_A 251 RA---GRVIDPRRCLKPVIL-------------TD-GPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 308 (451)
T ss_dssp CC---SEEEECCEEEEEEEE-------------CS-SSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred CC---CEEEECCCccccccc-------------cc-ccceeeecccccCCHHHHHHhccccCCCCCCCccEEEEe
Confidence 98 788877755432111 00 001110 23335667899999999988566556654
No 50
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=137.02 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=63.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
++|..|+|.|.+.+..+... .++++++.||||+|||++|++|++........+. +++|.+||++|..|+.+.++.+.
T Consensus 110 ~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~-~~lil~PtreLa~Q~~~~~~~l~ 186 (300)
T 3fmo_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQMG 186 (300)
T ss_dssp TTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhccCCCc-eEEEEcCcHHHHHHHHHHHHHHH
Confidence 57888999999988665421 1389999999999999999999998765444344 89999999999999999888764
No 51
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.32 E-value=5e-12 Score=125.10 Aligned_cols=70 Identities=21% Similarity=0.237 Sum_probs=56.1
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhC---CCCCceEEEEccchhhHHH-HHHHHHhh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK---PENPVKLIYCTRTVHEMEK-TLAELKLL 90 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~---~~~~~~vvi~T~T~~l~~Q-~~~el~~l 90 (724)
.+||.|.+.+..+. +++++++.||||+|||++++.+++...... ..+. +++|.+||+++.+| +.+++..+
T Consensus 33 ~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~-~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 33 QLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPG-KVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCC-CEEEEESSHHHHHHHHHHTHHHH
T ss_pred CchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCC-cEEEEECHHHHHHHHHHHHHHHH
Confidence 47999999987765 568999999999999999999987664431 1235 89999999999999 55566665
No 52
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.28 E-value=1.1e-11 Score=140.81 Aligned_cols=73 Identities=19% Similarity=0.240 Sum_probs=62.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCC--CCceEEEEccchhhHHHHHHHHHhh
Q 004910 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 13 p~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~--~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
||. |||.|.+.+..+. +++++++.||||+|||++|++|++......+. ++ +++|.+||+++..|+.++++++
T Consensus 2 ~~~-~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 2 PLK-PRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKG-KVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCC-CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHHH
T ss_pred CCC-CcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCC-EEEEEeCCHHHHHHHHHHHHHH
Confidence 566 5999999988764 67899999999999999999999887765431 45 8999999999999999999887
Q ss_pred h
Q 004910 91 H 91 (724)
Q Consensus 91 ~ 91 (724)
.
T Consensus 76 ~ 76 (555)
T 3tbk_A 76 F 76 (555)
T ss_dssp H
T ss_pred h
Confidence 5
No 53
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.27 E-value=1e-10 Score=133.87 Aligned_cols=67 Identities=18% Similarity=0.103 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhhh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHN 92 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~~ 92 (724)
.|+|.|..-+-.+. +|+ +.||+||+|||+++++|++..+. .++ +++|.|||..|..|..+.+..+..
T Consensus 74 ~p~~VQ~~~i~~ll----~G~--Iaem~TGsGKTlaf~LP~l~~~l---~g~-~vlVltPTreLA~Q~~e~~~~l~~ 140 (853)
T 2fsf_A 74 RHFDVQLLGGMVLN----ERC--IAEMRTGEGKTLTATLPAYLNAL---TGK-GVHVVTVNDYLAQRDAENNRPLFE 140 (853)
T ss_dssp CCCHHHHHHHHHHH----SSE--EEECCTTSCHHHHHHHHHHHHHT---TSS-CCEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCChHHHhhccccc----CCe--eeeecCCchHHHHHHHHHHHHHH---cCC-cEEEEcCCHHHHHHHHHHHHHHHH
Confidence 35899988765443 455 99999999999999999986543 245 899999999999999998888754
No 54
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.27 E-value=1.2e-10 Score=128.07 Aligned_cols=119 Identities=16% Similarity=0.106 Sum_probs=80.2
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~ 610 (724)
.++.++||+++....+.+++.+++.+ .+...+.++ ....+++.|++ |+-.||+++ ..+.+|||+
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~-------~~v~~lhg~---~r~~~~~~f~~----g~~~vLVaT--~v~e~GiDi 233 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAG-------KKVLYLNRK---TFESEYPKCKS----EKWDFVITT--DISEMGANF 233 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTT-------CCEEEESTT---THHHHTTHHHH----SCCSEEEEC--GGGGTSCCC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcC-------CeEEEeCCc---cHHHHHHhhcC----CCCeEEEEC--chHHcCccc
Confidence 47899999999999999999987642 133344442 45678899986 677899987 589999999
Q ss_pred CCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEe
Q 004910 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (724)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD 681 (724)
| ...||..|.++.+.-| +..+ --.+-.|.....+.|.+||.=|.....|++++++
T Consensus 234 p---~~~VI~~g~~~~~v~d----------~~~~---vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 234 K---ADRVIDPRKTIKPILL----------DGRV---SMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp C---CSEEEECCEEEEEEEE----------TTEE---EEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred C---CcEEEecCccccceec----------ccce---eecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 8 4667777655532211 0000 0011122334667899999999986666666665
No 55
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.26 E-value=1.2e-11 Score=141.38 Aligned_cols=122 Identities=14% Similarity=0.011 Sum_probs=82.4
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~ 610 (724)
.++.+|||++|....+.+++.+++.+. +...+.+ ..+...+++|++ ++-.||+++ ..+.+|||+
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~-------~v~~lhg---~~R~~~l~~F~~----g~~~VLVaT--dv~~rGiDi 417 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGK-------RVIQLSR---KTFDTEYPKTKL----TDWDFVVTT--DISEMGANF 417 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTC-------CEEEECT---TTHHHHTTHHHH----SCCSEEEEC--GGGGTTCCC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCC-------cEEEECh---HHHHHHHHhhcC----CCcEEEEEC--cHHHcCccc
Confidence 478999999999999999999986532 2233433 245678899986 577899987 589999999
Q ss_pred CCCCceEEEEEccCCCCCc-cHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEec
Q 004910 611 DRHYGRLVIMFGVPFQYTL-SKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADK 682 (724)
Q Consensus 611 ~~~~~r~vii~glPfp~~~-dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~ 682 (724)
+ ++.||..|+++-+-. +.. +... .-.|-.|.......|.+||.=|.....|..+++..
T Consensus 418 ~---v~~VId~g~~~~P~~~~~~--------~~~~---~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 418 R---AGRVIDPRRCLKPVILTDG--------PERV---ILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp C---CSEEEECCEEEEEEEECSS--------SCEE---EEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred C---ceEEEECcceecceecccC--------CCce---EEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 4 799999998654210 000 0000 01222344456778999999999765555555543
No 56
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.26 E-value=1.4e-11 Score=140.02 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=60.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCC--CCceEEEEccchhhHHHHHHHHHh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~--~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
.+++ |||.|.+.+..+. +++++++.||||+|||++|++|++......+. ++ +++|.+||+++..|+.+++++
T Consensus 4 ~~~~-~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~-~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 4 ETKK-ARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp -----CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 4565 6999999887765 57899999999999999999998877665431 45 899999999999999999988
Q ss_pred hh
Q 004910 90 LH 91 (724)
Q Consensus 90 l~ 91 (724)
+.
T Consensus 78 ~~ 79 (556)
T 4a2p_A 78 HF 79 (556)
T ss_dssp HH
T ss_pred Hh
Confidence 74
No 57
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.26 E-value=2.1e-11 Score=142.90 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=63.8
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCC--CCceEEEEccchhhHHHHHHHH
Q 004910 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAEL 87 (724)
Q Consensus 10 ~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~--~~~~vvi~T~T~~l~~Q~~~el 87 (724)
-.|+|..|||.|.+.+..+. +++++++.||||+|||++|++|++......+. ++ +++|.+||.+|..|+.+++
T Consensus 7 ~~~g~~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~-~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 7 NLYSPFKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG-KVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp CTTC--CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCC-CEEEECSSHHHHHHHHHHH
T ss_pred cccCCCCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCC-eEEEEECCHHHHHHHHHHH
Confidence 35888889999999987765 57899999999999999999999877655432 25 8999999999999999999
Q ss_pred Hhhh
Q 004910 88 KLLH 91 (724)
Q Consensus 88 ~~l~ 91 (724)
+++.
T Consensus 82 ~~~~ 85 (696)
T 2ykg_A 82 SKYF 85 (696)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8874
No 58
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.25 E-value=5.8e-10 Score=128.12 Aligned_cols=70 Identities=16% Similarity=0.082 Sum_probs=57.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
.+| .|+|.|...+-.+. +|+ +.||+||+|||++|++|++..+. .++ .|+|.|+|..|..|..+++..+.
T Consensus 80 lG~-~pt~VQ~~~ip~ll----~G~--Iaea~TGeGKTlaf~LP~~l~aL---~g~-~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALH----DGN--IAEMKTGEGKTLTSTLPVYLNAL---TGK-GVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HSC-CCCHHHHHHHHHHH----TTS--EEECCTTSCHHHHHHHHHHHHHT---TSS-CEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCcHHHHHhhHHHh----CCC--EEEccCCcHHHHHHHHHHHHHHH---cCC-CEEEEeCCHHHHHHHHHHHHHHH
Confidence 467 57999999776554 555 99999999999999999986553 246 89999999999999999888875
Q ss_pred h
Q 004910 92 N 92 (724)
Q Consensus 92 ~ 92 (724)
.
T Consensus 149 ~ 149 (844)
T 1tf5_A 149 E 149 (844)
T ss_dssp H
T ss_pred h
Confidence 4
No 59
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.25 E-value=2e-09 Score=123.52 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=56.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
.++ .|+|.|..-+-.+. +|+ +.||+||+|||+++++|++..+.. ++ .|.|.|+|..|..|..+++..+.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll----~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~-~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALH----LGN--VAEMKTGEGKTLTCVLPAYLNALA---GN-GVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSC-CCCHHHHHHHHHHH----TTE--EEECCTTSCHHHHTHHHHHHHHTT---TS-CEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHh----cCC--EEEecCCCccHHHHHHHHHHHHHh---CC-CeEEEeCCHHHHHHHHHHHHHHH
Confidence 456 46899998775443 454 999999999999999999765542 46 89999999999999999888875
Q ss_pred h
Q 004910 92 N 92 (724)
Q Consensus 92 ~ 92 (724)
.
T Consensus 177 ~ 177 (922)
T 1nkt_A 177 R 177 (922)
T ss_dssp H
T ss_pred h
Confidence 4
No 60
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.22 E-value=2.3e-11 Score=144.37 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=61.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCC--CCceEEEEccchhhHHHHHHHHHh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~--~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
|++..|||.|.+.+..+. +++++++.||||+|||++|++|++......+. ++ +++|.+||+++..|+.+++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l----~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~-~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp ----CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCC-CEEEECSSHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHH----hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 347778999999887664 57899999999999999999998877665421 45 899999999999999999988
Q ss_pred hh
Q 004910 90 LH 91 (724)
Q Consensus 90 l~ 91 (724)
+.
T Consensus 319 ~~ 320 (797)
T 4a2q_A 319 HF 320 (797)
T ss_dssp HH
T ss_pred hc
Confidence 74
No 61
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.22 E-value=5.7e-11 Score=138.58 Aligned_cols=90 Identities=14% Similarity=0.079 Sum_probs=74.3
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCC--cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHH
Q 004910 10 VYFPYDNIYPEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (724)
Q Consensus 10 ~~Fp~~~~r~~Q~e~~~~v~~~l~~~~--~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el 87 (724)
..+||+ ++|.|.+.+..|.+.+..+. +.++.||||+|||++|+.|++..... +. +++|.+||.+|..|+.+++
T Consensus 363 ~~lpf~-lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~-qvlvlaPtr~La~Q~~~~l 437 (780)
T 1gm5_A 363 KSLPFK-LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GF-QTAFMVPTSILAIQHYRRT 437 (780)
T ss_dssp HHSSSC-CCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TS-CEEEECSCHHHHHHHHHHH
T ss_pred HhCCCC-CCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CC-eEEEEeCcHHHHHHHHHHH
Confidence 468995 79999999999999988764 89999999999999999998876543 45 8999999999999999998
Q ss_pred HhhhhhcccCCCCCCceEEEEecCc
Q 004910 88 KLLHNYQTRHLGPAAKILAIGLSSR 112 (724)
Q Consensus 88 ~~l~~~~~~~~~~~~~~~~~~l~gr 112 (724)
..+.. ..+++++.+.|.
T Consensus 438 ~~~~~--------~~gi~v~~l~G~ 454 (780)
T 1gm5_A 438 VESFS--------KFNIHVALLIGA 454 (780)
T ss_dssp HHHHT--------CSSCCEEECCSS
T ss_pred HHHhh--------hcCceEEEEeCC
Confidence 88642 234556666554
No 62
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.20 E-value=1.3e-11 Score=138.08 Aligned_cols=77 Identities=16% Similarity=0.124 Sum_probs=63.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
++|..|+|.|.+.+..+... .++++++.||||+|||++|++|++........+. +++|.+||++|..|+.+.++.+.
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~-~~lil~Pt~~La~Q~~~~~~~~~ 186 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYP-QCLCLSPTYELALQTGKVIEQMG 186 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCC-cEEEEeChHHHHHHHHHHHHHHH
Confidence 67888999999988776531 2489999999999999999999887654443344 89999999999999998888764
No 63
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.16 E-value=4.8e-11 Score=143.47 Aligned_cols=73 Identities=18% Similarity=0.200 Sum_probs=60.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCC--CCceEEEEccchhhHHHHHHHHHhhh
Q 004910 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE--NPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 14 ~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~--~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
+..|||.|.+.+..+. +++.+++.||||+|||++|++|++......+. ++ +++|.+||+++..|+.++++++.
T Consensus 246 ~~~~r~~Q~~ai~~il----~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~-~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKA-KVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp --CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCC-CEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCC-eEEEEeCCHHHHHHHHHHHHHHh
Confidence 6678999999887764 57899999999999999999998766544321 45 89999999999999999998875
No 64
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.16 E-value=7.7e-10 Score=129.79 Aligned_cols=144 Identities=11% Similarity=0.046 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHhcc-cCCcEEEEecChHHHHHHHHHHhhcccHHHH----h-cCcceEEeCCCc--hhHHHHHHHHHH
Q 004910 515 GVARNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEI----M-QHKLVFIETQDV--VETTLALDNYRK 586 (724)
Q Consensus 515 ~~~~~~~~~i~~~~~~-~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~----~-~~~~i~~e~~~~--~~~~~~~~~f~~ 586 (724)
++.......+.++... .+|.+|||+++....+.++..+.+.. ..+ . ....+..-..+. .+...+++.|+.
T Consensus 285 ~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~--~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~ 362 (773)
T 2xau_A 285 DYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEG--DQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPE 362 (773)
T ss_dssp CHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHH--HHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCC
T ss_pred hHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHH--HhhcccccCCCeEEEEeCCCCCHHHHHHHHhhccc
Confidence 3445555556665543 57899999999999999999887420 001 0 111222222232 222334444430
Q ss_pred h-ccCCCCeEEEEeecCcccccccCCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHHh
Q 004910 587 A-CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDF--LTFDALRQAAQC 663 (724)
Q Consensus 587 ~-~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~--~~~~a~~~v~Q~ 663 (724)
. -..|...|++++ ..+..|||+|+ ++.||-.|+|-..-.||. .+.+. ..|.......|.
T Consensus 363 ~~~~~g~~kVlVAT--~iae~GidIp~--v~~VId~g~~k~~~yd~~--------------~g~~~L~~~p~S~~s~~QR 424 (773)
T 2xau_A 363 SHNGRPGRKVVIST--NIAETSLTIDG--IVYVVDPGFSKQKVYNPR--------------IRVESLLVSPISKASAQQR 424 (773)
T ss_dssp CSSSSCCEEEEEEC--THHHHTCCCTT--EEEEEECSEEEEEEEETT--------------TTEEEEEEEECCHHHHHHH
T ss_pred ccCCCCceEEEEeC--cHHHhCcCcCC--eEEEEeCCCccceeeccc--------------cCccccccccCCHHHHHhh
Confidence 0 003566788877 58999999995 788998888632211211 01110 112334567899
Q ss_pred hcccccCCCCeEEEEEE
Q 004910 664 VGRVIRSKADYGMMIFA 680 (724)
Q Consensus 664 ~GR~iR~~~D~g~vvll 680 (724)
+||.=|. ..|..+.+
T Consensus 425 ~GRaGR~--~~G~~~~l 439 (773)
T 2xau_A 425 AGRAGRT--RPGKCFRL 439 (773)
T ss_dssp HHGGGSS--SSEEEEES
T ss_pred ccccCCC--CCCEEEEE
Confidence 9999997 45766554
No 65
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.13 E-value=2.1e-10 Score=118.72 Aligned_cols=68 Identities=15% Similarity=0.112 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.+||.|.+.+..+.+ ++..++.||||+|||++++.++....... +. +++|.+||+++.+|+.+++.++
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~-~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY--EG-KILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC--SS-EEEEECSSHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CC-eEEEEECCHHHHHHHHHHHHHh
Confidence 469999998876654 36678899999999999988876655432 34 8999999999999999998875
No 66
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.10 E-value=4.8e-11 Score=139.81 Aligned_cols=73 Identities=21% Similarity=0.200 Sum_probs=59.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCC---CCCceEEEEccchhhHHHH-HHHHH
Q 004910 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP---ENPVKLIYCTRTVHEMEKT-LAELK 88 (724)
Q Consensus 13 p~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~---~~~~~vvi~T~T~~l~~Q~-~~el~ 88 (724)
+|+ +||.|.+.+..+. +++.+++.||||+|||++|++|++....... .++ +++|.+||++|..|+ .++++
T Consensus 5 ~~~-l~~~Q~~~i~~il----~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~-~vlvl~P~~~L~~Q~~~~~l~ 78 (699)
T 4gl2_A 5 MLQ-LRPYQMEVAQPAL----EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPG-KVIVLVNKVLLVEQLFRKEFQ 78 (699)
T ss_dssp --C-CCHHHHHHHHHHH----SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCC-CBCCEESCSHHHHHHHHHTHH
T ss_pred CCC-ccHHHHHHHHHHH----hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCC-eEEEEECCHHHHHHHHHHHHH
Confidence 454 6999999888776 4789999999999999999999887654321 125 899999999999999 99988
Q ss_pred hhh
Q 004910 89 LLH 91 (724)
Q Consensus 89 ~l~ 91 (724)
.+.
T Consensus 79 ~~~ 81 (699)
T 4gl2_A 79 PFL 81 (699)
T ss_dssp HHH
T ss_pred HHc
Confidence 864
No 67
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.08 E-value=3.8e-10 Score=113.56 Aligned_cols=66 Identities=17% Similarity=0.158 Sum_probs=53.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
|+++ +||.|.+.+..+. +++.+++.+|||+|||+.++.++... ++ +++|.+||.++..|+.+++.+
T Consensus 90 ~~~~-l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~------~~-~~liv~P~~~L~~q~~~~~~~ 155 (237)
T 2fz4_A 90 AEIS-LRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------ST-PTLIVVPTLALAEQWKERLGI 155 (237)
T ss_dssp CCCC-CCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS------CS-CEEEEESSHHHHHHHHHHHGG
T ss_pred CCCC-cCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc------CC-CEEEEeCCHHHHHHHHHHHHh
Confidence 4454 6999999877644 45679999999999999988765432 35 899999999999999988776
No 68
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.03 E-value=4.5e-10 Score=125.14 Aligned_cols=68 Identities=16% Similarity=0.140 Sum_probs=56.2
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHh
Q 004910 10 VYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 10 ~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
..||++ +||.|.+.+..+. +++.+++.+|||+|||++|+.++... ++ +++|.+||+++..|+.+++..
T Consensus 88 ~~~~~~-l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~------~~-~~Lvl~P~~~L~~Q~~~~~~~ 155 (472)
T 2fwr_A 88 FDAEIS-LRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL------ST-PTLIVVPTLALAEQWKERLGI 155 (472)
T ss_dssp CCCCCC-BCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH------CS-CEEEEESSHHHHHHHHHHGGG
T ss_pred ccCCCC-cCHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHHc------CC-CEEEEECCHHHHHHHHHHHHh
Confidence 345666 6999999887654 45679999999999999999886543 35 899999999999999998776
No 69
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.94 E-value=1.6e-08 Score=116.18 Aligned_cols=122 Identities=12% Similarity=0.079 Sum_probs=80.9
Q ss_pred CCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCC-chhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004910 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (724)
Q Consensus 532 ~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~ 610 (724)
.+|.+|||.|.+..+.+++.+.+.+ .+...+.+.- ...+...++.|+. ..|+-.||+++ ..+..|||+
T Consensus 320 ~~g~iIf~~s~~~ie~la~~L~~~g-------~~v~~lHG~L~~~~R~~~~~~F~~--~~g~~~VLVAT--di~e~GlDi 388 (677)
T 3rc3_A 320 RPGDCIVCFSKNDIYSVSRQIEIRG-------LESAVIYGSLPPGTKLAQAKKFND--PNDPCKILVAT--DAIGMGLNL 388 (677)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHTT-------CCCEEECTTSCHHHHHHHHHHHHC--TTSSCCEEEEC--GGGGSSCCC
T ss_pred CCCCEEEEcCHHHHHHHHHHHHhcC-------CCeeeeeccCCHHHHHHHHHHHHc--cCCCeEEEEeC--cHHHCCcCc
Confidence 4666888999999999999887643 1333343322 1234567888874 12455799987 589999999
Q ss_pred CCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCC--eEEEEEEecc
Q 004910 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKAD--YGMMIFADKR 683 (724)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D--~g~vvllD~R 683 (724)
+ ++.||..|+|... .||. ++ .. +.|.....+.|.+||.=|...+ .|.++++...
T Consensus 389 -~--v~~VI~~~~~k~~-~~~~-----------G~---~~-~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 389 -S--IRRIIFYSLIKPS-INEK-----------GE---RE-LEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp -C--BSEEEESCSBC---------------------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred -C--ccEEEECCccccc-cccC-----------Cc---cc-cccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 4 8999999998652 2322 11 00 1223356788999999999876 6898888654
No 70
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.93 E-value=8e-07 Score=100.14 Aligned_cols=66 Identities=23% Similarity=0.143 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhhhh
Q 004910 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLHNY 93 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~~~ 93 (724)
|+.|. |-.+ +|..|+ +.|..||.|||+++.+|++..|.. ++ .|.|.|+|.-|..|-.+.+..+-++
T Consensus 77 ~dvQl--igg~--~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---G~-~vhVvT~ndyLA~rdae~m~~l~~~ 142 (822)
T 3jux_A 77 FDVQV--MGGI--ALHEGK--VAEMKTGEGKTLAATMPIYLNALI---GK-GVHLVTVNDYLARRDALWMGPVYLF 142 (822)
T ss_dssp CHHHH--HHHH--HHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---SS-CEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cHHHH--HHHH--HHhCCC--hhhccCCCCccHHHHHHHHHHHhc---CC-ceEEEeccHHHHHhHHHHHHHHHHH
Confidence 55554 4443 445565 899999999999999999877653 56 8999999999999988888777654
No 71
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.87 E-value=8.1e-09 Score=115.85 Aligned_cols=72 Identities=15% Similarity=0.077 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.+||.|.+.+..+......+..+++.+|||+|||+.++..+.. .......+ +++|.+|+ ++..|+.+|++++
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~-~~~~~~~~-~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSD-AKKENELT-PSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHH-HHHTTCCS-SEEEEECS-TTHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHH-HHhcCCCC-CEEEEccH-HHHHHHHHHHHHH
Confidence 4799999999888777778889999999999999998764433 33333345 89999995 6889999999876
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.87 E-value=4.7e-09 Score=125.75 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHHHHHhC----------CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHH
Q 004910 17 IYPEQYSYMLELKRALDAK----------GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 17 ~r~~Q~e~~~~v~~~l~~~----------~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
|||.|.+.+..+.+.+..+ +.+++.+|||||||+++ ++++..+...+... +|+|.|+|..|..|+.++
T Consensus 272 ~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~-rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 272 MRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFID-KVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCC-EEEEEECGGGCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCc-eEEEEeCcHHHHHHHHHH
Confidence 7999999999999987643 57999999999999998 45555554333335 999999999999999998
Q ss_pred HHhh
Q 004910 87 LKLL 90 (724)
Q Consensus 87 l~~l 90 (724)
+..+
T Consensus 350 f~~f 353 (1038)
T 2w00_A 350 YQRF 353 (1038)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 8764
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.64 E-value=7.7e-08 Score=110.24 Aligned_cols=70 Identities=16% Similarity=0.056 Sum_probs=57.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
.+| .|+|.|...+-.+ -+|+ +.||.||+|||+++++|++..+. .++ +|.|.|||..|..|..+.+..+.
T Consensus 76 lG~-~Pt~VQ~~~ip~L----lqG~--IaeakTGeGKTLvf~Lp~~L~aL---~G~-qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVL----HEGK--IAEMKTGEGKTLVATLAVALNAL---TGK-GVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHH----HTTS--EEECCSTHHHHHHHHHHHHHHHT---TCS-CCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccc----cCCc--eeeccCCCchHHHHHHHHHHHHH---hCC-CEEEEeCCHHHHHHHHHHHHHHH
Confidence 467 4699999977544 3455 99999999999999999875553 245 89999999999999999888875
Q ss_pred h
Q 004910 92 N 92 (724)
Q Consensus 92 ~ 92 (724)
.
T Consensus 145 ~ 145 (997)
T 2ipc_A 145 R 145 (997)
T ss_dssp H
T ss_pred H
Confidence 4
No 74
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.63 E-value=9.1e-08 Score=113.29 Aligned_cols=74 Identities=15% Similarity=0.154 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
.+||.|.+.+..+...+.++..+++-.+||.|||+..+..+..........+ +++|.+| .+++.|+.+|+.++.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~-~~LIV~P-~sll~qW~~E~~~~~ 309 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNG-PHIIVVP-LSTMPAWLDTFEKWA 309 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCS-CEEEECC-TTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCC-CEEEEEC-chHHHHHHHHHHHHC
Confidence 5799999999999988899999999999999999988765433322222345 7899999 678899999999873
No 75
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.62 E-value=4e-08 Score=118.33 Aligned_cols=100 Identities=15% Similarity=0.237 Sum_probs=73.3
Q ss_pred ccCCcEEEEecChHHHHHHHHHHhhc-ccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCC--CeEEEEeecCccc
Q 004910 530 IVPDGIVCFFVSYSYMDEIIATWNDS-GILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGR--GAVFFSVARGKVA 605 (724)
Q Consensus 530 ~~~g~~Lvlf~Sy~~l~~v~~~~~~~-~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~--~~vL~~v~~g~~~ 605 (724)
..++.++||+++....+.+...+.+. + .+...+.+. ....+..+++.|+. ++ -.||+++ ....
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~~g-------~~~~~lhG~~~~~~R~~~l~~F~~----g~~~~~vLvaT--~v~~ 567 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLREREG-------IRAAVFHEGMSIIERDRAAAWFAE----EDTGAQVLLCS--EIGS 567 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTTTC-------CCEEEECTTSCTTHHHHHHHHHHS----TTSSCEEEECS--CCTT
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHHcC-------CcEEEEeCCCCHHHHHHHHHHHhC----CCCcccEEEec--chhh
Confidence 35679999999999999999998742 2 133344433 22457788999986 44 5688866 6899
Q ss_pred ccccCCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCe
Q 004910 606 EGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADY 674 (724)
Q Consensus 606 EGiD~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~ 674 (724)
+|+|+++ +..||+..+|+. | ....|++||+-|..+..
T Consensus 568 ~GlDl~~--~~~VI~~d~p~~-~-----------------------------~~~~Q~~GR~~R~Gq~~ 604 (968)
T 3dmq_A 568 EGRNFQF--ASHMVMFDLPFN-P-----------------------------DLLEQRIGRLDRIGQAH 604 (968)
T ss_dssp CSSCCTT--CCEEECSSCCSS-H-----------------------------HHHHHHHHTTSCSSSCS
T ss_pred cCCCccc--CcEEEEecCCCC-H-----------------------------HHHHHHhhccccCCCCc
Confidence 9999997 788999888742 1 23469999999977654
No 76
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.60 E-value=6.1e-08 Score=97.19 Aligned_cols=69 Identities=9% Similarity=0.128 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCC-CCceEEEEccchhhHHHHHHHHHh
Q 004910 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPE-NPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 17 ~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~-~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
.++.|.+.+..+ .+++.+++.||||+|||..+..+++........ ...++++..||+.+..|+.+.+..
T Consensus 62 ~~~~q~~~i~~i----~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 62 VKKFESEILEAI----SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH----hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 478888877665 478999999999999999888877765443321 123899999999999998776654
No 77
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.48 E-value=4.8e-07 Score=104.40 Aligned_cols=74 Identities=20% Similarity=0.235 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHHHHHH-----hCCcEEEEcCCCcchHHHHHHHHHHHHhhCC----CCCceEEEEccchhhHHHHHHH
Q 004910 16 NIYPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~-----~~~~~~iEApTGtGKTla~L~~al~~~~~~~----~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
.+||.|++.+..+.+.+. ++..+++-.+||.|||+..+..+.......+ ..+ +++|.+|+ ++..|+.+|
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~-~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEID-KVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCS-CEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCC-cEEEEecH-HHHHHHHHH
Confidence 479999999999988774 4457899999999999998876555443332 124 68999997 889999999
Q ss_pred HHhhh
Q 004910 87 LKLLH 91 (724)
Q Consensus 87 l~~l~ 91 (724)
+.++.
T Consensus 133 ~~~~~ 137 (644)
T 1z3i_X 133 VGKWL 137 (644)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 99875
No 78
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.18 E-value=8.2e-06 Score=94.17 Aligned_cols=67 Identities=22% Similarity=0.346 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
..-+.|.+ +|..++.++...+|.+|+|||||..... ++.+.... +. +|+++|+|+.-.+++++.|..
T Consensus 189 ~LN~~Q~~---AV~~al~~~~~~lI~GPPGTGKT~ti~~-~I~~l~~~--~~-~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 189 CLDTSQKE---AVLFALSQKELAIIHGPPGTGKTTTVVE-IILQAVKQ--GL-KVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TCCHHHHH---HHHHHHHCSSEEEEECCTTSCHHHHHHH-HHHHHHHT--TC-CEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHH---HHHHHhcCCCceEEECCCCCCHHHHHHH-HHHHHHhC--CC-eEEEEcCchHHHHHHHHHHHh
Confidence 35688988 5566677777999999999999976443 34444433 46 999999999999999887654
No 79
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.11 E-value=1.4e-06 Score=99.15 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=43.8
Q ss_pred HHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHh
Q 004910 29 KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 29 ~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
..++.+++.+++.||||+|||.+++.|++. .+. +++|.+||+.+..|+.+.+..
T Consensus 226 ~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~------~g~-~vLVl~PTReLA~Qia~~l~~ 279 (666)
T 3o8b_A 226 PAVPQSFQVAHLHAPTGSGKSTKVPAAYAA------QGY-KVLVLNPSVAATLGFGAYMSK 279 (666)
T ss_dssp CCCCSSCEEEEEECCTTSCTTTHHHHHHHH------TTC-CEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHcCCeEEEEeCCchhHHHHHHHHHHH------CCC-eEEEEcchHHHHHHHHHHHHH
Confidence 344556788999999999999999988664 145 899999999999998775544
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.98 E-value=6.4e-05 Score=70.31 Aligned_cols=107 Identities=18% Similarity=0.271 Sum_probs=76.5
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD 609 (724)
.++.+|||+++....+.+++.+...++ ....+.+. ...++...++.|++ ++-.||+++ ..+++|+|
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~----g~~~vlv~T--~~~~~Gld 100 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDLGY-------PCDKIHGGMIQEDRFDVMNEFKR----GEYRYLVAT--DVAARGID 100 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEC--GGGTTTCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEC--ChhhcCCc
Confidence 457899999999999999999876532 23334332 22456678888875 566799887 68999999
Q ss_pred CCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEec
Q 004910 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADK 682 (724)
Q Consensus 610 ~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~ 682 (724)
+|+ ++.||..++|... ....|++||.-|...+--+++++.+
T Consensus 101 ~~~--~~~Vi~~~~p~~~------------------------------~~~~qr~GR~~R~g~~g~~~~~~~~ 141 (163)
T 2hjv_A 101 IEN--ISLVINYDLPLEK------------------------------ESYVHRTGRTGRAGNKGKAISFVTA 141 (163)
T ss_dssp CSC--CSEEEESSCCSSH------------------------------HHHHHHTTTSSCTTCCEEEEEEECG
T ss_pred hhc--CCEEEEeCCCCCH------------------------------HHHHHhccccCcCCCCceEEEEecH
Confidence 997 6779998877421 2235999999998665334445543
No 81
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=97.95 E-value=2.4e-06 Score=94.48 Aligned_cols=122 Identities=17% Similarity=0.106 Sum_probs=73.9
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~ 610 (724)
.++.+|||++|....+.+++.++..++ ....+.+. .+...++.|+ .|+..||+++ ..+.+|||+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~-------~v~~lh~~---~R~~~~~~f~----~g~~~iLVaT--~v~~~GiDi 252 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGK-------KVIQLNRK---SYDTEYPKCK----NGDWDFVITT--DISEMGANF 252 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTC-------CEEEESTT---CCCCCGGGSS----SCCCSEEEES--SCC---CCC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCC-------cEEecCHH---HHHHHHhhcc----CCCceEEEEC--ChHHhCeec
Confidence 478999999999999999999876532 22233332 2234556665 3677899987 589999999
Q ss_pred CCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHHhhcccccCCCCeE-EEEEEec
Q 004910 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGD-FLTFDALRQAAQCVGRVIRSKADYG-MMIFADK 682 (724)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~-~~~~~a~~~v~Q~~GR~iR~~~D~g-~vvllD~ 682 (724)
|+ +.||-.|..+.+..+ ++.. ..... |-.|.......|.+||.=|.....| +++++..
T Consensus 253 p~---~~VI~~G~~~~~~~~---------~~~~--~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~ 312 (459)
T 2z83_A 253 GA---SRVIDCRKSVKPTIL---------EEGE--GRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGA 312 (459)
T ss_dssp SC---SEEEECCEECCEEEE---------CSSS--CEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSC
T ss_pred CC---CEEEECCcccccccc---------cccc--cccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEcc
Confidence 97 789988855443211 0000 00000 1123345667899999999876333 4445544
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.94 E-value=4.4e-05 Score=73.56 Aligned_cols=115 Identities=23% Similarity=0.306 Sum_probs=79.7
Q ss_pred HHHHHhcccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeec
Q 004910 523 LLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVAR 601 (724)
Q Consensus 523 ~i~~~~~~~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~~ 601 (724)
.+.+++...++.+|||+++....+.+++.+...++ ....+.+. ...++...++.|+. ++-.||+++
T Consensus 45 ~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~-------~~~~lhg~~~~~~R~~~l~~F~~----g~~~vLvaT-- 111 (191)
T 2p6n_A 45 YLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGV-------EAVAIHGGKDQEERTKAIEAFRE----GKKDVLVAT-- 111 (191)
T ss_dssp HHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTC-------CEEEECTTSCHHHHHHHHHHHHH----TSCSEEEEC--
T ss_pred HHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHhc----CCCEEEEEc--
Confidence 35556666678999999999999999999876432 23334332 23456778999986 566799887
Q ss_pred CcccccccCCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEe
Q 004910 602 GKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (724)
Q Consensus 602 g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD 681 (724)
..+++|+|+|+ ++.||...+|.. + ....|++||.-|....--+++++.
T Consensus 112 ~~~~~Gldi~~--v~~VI~~d~p~~----~--------------------------~~~~qr~GR~gR~g~~g~~i~l~~ 159 (191)
T 2p6n_A 112 DVASKGLDFPA--IQHVINYDMPEE----I--------------------------ENYVHRIGRTGCSGNTGIATTFIN 159 (191)
T ss_dssp HHHHTTCCCCC--CSEEEESSCCSS----H--------------------------HHHHHHHTTSCC---CCEEEEEEC
T ss_pred CchhcCCCccc--CCEEEEeCCCCC----H--------------------------HHHHHHhCccccCCCCcEEEEEEc
Confidence 58999999987 678998887642 1 123499999999876544555665
Q ss_pred c
Q 004910 682 K 682 (724)
Q Consensus 682 ~ 682 (724)
+
T Consensus 160 ~ 160 (191)
T 2p6n_A 160 K 160 (191)
T ss_dssp T
T ss_pred C
Confidence 4
No 83
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.89 E-value=9.4e-07 Score=101.75 Aligned_cols=119 Identities=17% Similarity=0.138 Sum_probs=80.4
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~ 610 (724)
.++.+|||++|.+..+.+++.|++.++ +...+.+ .++..+++.|++ ++-.||+++ ..+.+|||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~-------~v~~lHg---~eR~~v~~~F~~----g~~~VLVaT--dv~e~GIDi 472 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGK-------RVIQLNR---KSYDTEYPKCKN----GDWDFVITT--DISEMGANF 472 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTC-------CEEEECS---SSHHHHGGGGGT----CCCSEEEEC--GGGGTTCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC-------eEEEeCh---HHHHHHHHHHHC----CCceEEEEC--chhhcceee
Confidence 578999999999999999999986532 3334444 245667888764 677799987 589999999
Q ss_pred CCCCceEEEEEccCCCCCc--cHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEE
Q 004910 611 DRHYGRLVIMFGVPFQYTL--SKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFA 680 (724)
Q Consensus 611 ~~~~~r~vii~glPfp~~~--dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvll 680 (724)
| ++.||..|.++.+.- |. +.+++ -.|-.|.......|.+||.=|.....|..+++
T Consensus 473 p---v~~VI~~g~~~~p~vi~da---------~~r~~---ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 473 G---ASRVIDCRKSVKPTILDEG---------EGRVI---LSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp C---CSEEEECCEECCEEEECST---------TCEEE---ECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred C---CcEEEECCCcccceeeecc---------cccce---ecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 8 688998887664210 10 00000 01223344566789999999985555665555
No 84
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.86 E-value=7.7e-05 Score=69.91 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=71.6
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD 609 (724)
.++.+|||+++....+.++..+...++ ....+.+. ...++...++.|+. ++..||+++ ..+++|+|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T--~~~~~G~d 95 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRNDKF-------TVSAIYSDLPQQERDTIMKEFRS----GSSRILIST--DLLARGID 95 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEE--GGGTTTCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCC-------CEEEEECCCCHHHHHHHHHHHHc----CCCEEEEEc--ChhhcCCC
Confidence 457899999999999999999876432 22333332 22456677888875 566799987 58999999
Q ss_pred CCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEe
Q 004910 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFAD 681 (724)
Q Consensus 610 ~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD 681 (724)
+|+ ++.||..++|.... ...|++||.-|....--+++++.
T Consensus 96 ~~~--~~~Vi~~~~p~~~~------------------------------~~~qr~GR~gR~g~~g~~~~~~~ 135 (165)
T 1fuk_A 96 VQQ--VSLVINYDLPANKE------------------------------NYIHRIGRGGRFGRKGVAINFVT 135 (165)
T ss_dssp CCS--CSEEEESSCCSSGG------------------------------GGGGSSCSCC-----CEEEEEEE
T ss_pred ccc--CCEEEEeCCCCCHH------------------------------HHHHHhcccccCCCCceEEEEEc
Confidence 996 77899988775321 12599999999764433344443
No 85
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.86 E-value=4.5e-06 Score=91.67 Aligned_cols=119 Identities=13% Similarity=0.068 Sum_probs=68.7
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~ 610 (724)
.++.++||++|.+..+.+++.+++.+. +...+.+ ..+...++.|++ |+-.||+++ ..+..|||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~-------~v~~lhg---~~R~~~~~~F~~----g~~~vLVaT--~v~e~GiDi 239 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGK-------SVVVLNR---KTFEREYPTIKQ----KKPDFILAT--DIAEMGANL 239 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTC-------CEEECCS---SSCC------------CCCSEEEES--SSTTCCTTC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCC-------CEEEecc---hhHHHHHhhhcC----CCceEEEEC--Chhheeecc
Confidence 378999999999999999999886431 2233333 234567888875 677899987 589999999
Q ss_pred CCCCceEEEEEccCCCCCc-cHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEE
Q 004910 611 DRHYGRLVIMFGVPFQYTL-SKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFA 680 (724)
Q Consensus 611 ~~~~~r~vii~glPfp~~~-dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvll 680 (724)
| ++.||..|..+.+-. ++. +. ---.|-.|.......|.+||.=|.....|..+++
T Consensus 240 p---v~~VI~~g~~~~pv~~~~~---------~~---~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 240 C---VERVLDCRTAFKPVLVDEG---------RK---VAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp C---CSEEEECCEEEEEEEETTT---------TE---EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred C---ceEEEeCCccceeeecccc---------cc---eeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 8 677887665332100 000 00 0001112233456789999999974334444444
No 86
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.85 E-value=9.1e-05 Score=84.92 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
...+.|.+.+..+. .+...+|.+|+|||||..... .+...... .+. +|+++++|+...+++.+.+..
T Consensus 180 ~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~-~i~~l~~~-~~~-~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 180 DLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNG-PVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHH-HHHHHHTS-SSC-CEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHH-HHHHHHHc-CCC-eEEEEeCcHHHHHHHHHHHHh
Confidence 45789999776554 357899999999999976443 33333322 245 899999999999999887664
No 87
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.81 E-value=0.00021 Score=67.59 Aligned_cols=119 Identities=15% Similarity=0.276 Sum_probs=77.2
Q ss_pred HHHHHhccc-CCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEee
Q 004910 523 LLVEMVSIV-PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVA 600 (724)
Q Consensus 523 ~i~~~~~~~-~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~ 600 (724)
.+.++++.. ++.+|||+++....+.++..+...++ ....+.+. ...++...++.|+. |+..||+++
T Consensus 24 ~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~R~~~~~~f~~----g~~~vLvaT- 91 (175)
T 2rb4_A 24 ALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGH-------QVSLLSGELTVEQRASIIQRFRD----GKEKVLITT- 91 (175)
T ss_dssp HHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTC-------CEEEECSSCCHHHHHHHHHHHHT----TSCSEEEEC-
T ss_pred HHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-------cEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEe-
Confidence 344555443 56899999999999999999886532 22333332 22456678888875 566799987
Q ss_pred cCcccccccCCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEE-EEE
Q 004910 601 RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGM-MIF 679 (724)
Q Consensus 601 ~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~-vvl 679 (724)
..+++|+|+|+ ++.||..++|.-+.. ++ ......|.+||.-|.... |. +++
T Consensus 92 -~~~~~Gid~~~--~~~Vi~~d~p~~~~~--------------------~~----~~~~~~qr~GR~gR~g~~-g~~~~~ 143 (175)
T 2rb4_A 92 -NVCARGIDVKQ--VTIVVNFDLPVKQGE--------------------EP----DYETYLHRIGRTGRFGKK-GLAFNM 143 (175)
T ss_dssp -CSCCTTTCCTT--EEEEEESSCCC--CC--------------------SC----CHHHHHHHHCBC----CC-EEEEEE
T ss_pred -cchhcCCCccc--CCEEEEeCCCCCccc--------------------cC----CHHHHHHHhcccccCCCC-ceEEEE
Confidence 68999999997 788999888843211 11 124456999999997544 54 444
Q ss_pred Ee
Q 004910 680 AD 681 (724)
Q Consensus 680 lD 681 (724)
++
T Consensus 144 ~~ 145 (175)
T 2rb4_A 144 IE 145 (175)
T ss_dssp EC
T ss_pred Ec
Confidence 43
No 88
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.80 E-value=0.00013 Score=69.76 Aligned_cols=106 Identities=18% Similarity=0.222 Sum_probs=66.5
Q ss_pred CCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004910 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (724)
Q Consensus 532 ~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~ 610 (724)
++.+|||+++....+.++..+...++ ....+.+. ...++...++.|+. ++-.||+++ ..+.+|+|+
T Consensus 46 ~~k~lVF~~~~~~~~~l~~~L~~~g~-------~~~~lhg~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gldi 112 (185)
T 2jgn_A 46 DSLTLVFVETKKGADSLEDFLYHEGY-------ACTSIHGDRSQRDREEALHQFRS----GKSPILVAT--AVAARGLDI 112 (185)
T ss_dssp CSCEEEEESCHHHHHHHHHHHHHTTC-------CEEEEC--------CHHHHHHHH----TSSSEEEEE--C------CC
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCC-------ceEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEc--ChhhcCCCc
Confidence 56899999999999999999876532 22333321 12345668899986 566799987 589999999
Q ss_pred CCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEec
Q 004910 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADK 682 (724)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~ 682 (724)
|+ ++.||..++|.. + ....|++||.-|....--+++++++
T Consensus 113 ~~--~~~VI~~d~p~s----~--------------------------~~~~Qr~GR~~R~g~~g~~~~~~~~ 152 (185)
T 2jgn_A 113 SN--VKHVINFDLPSD----I--------------------------EEYVHRIGRTGRVGNLGLATSFFNE 152 (185)
T ss_dssp CS--BSEEEESSCCSS----H--------------------------HHHHHHHTTBCCTTSCEEEEEEECG
T ss_pred cc--CCEEEEeCCCCC----H--------------------------HHHHHHccccCCCCCCcEEEEEEch
Confidence 96 678888776642 1 2235999999998755334445543
No 89
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.72 E-value=0.00016 Score=68.37 Aligned_cols=107 Identities=12% Similarity=0.137 Sum_probs=75.4
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD 609 (724)
.++.+|||+++....+.+++.+...++ ....+.+. ...++...++.|+. ++..||+++ ..+++|+|
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~~hg~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gld 96 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNF-------PAIAIHRGMPQEERLSRYQQFKD----FQRRILVAT--NLFGRGMD 96 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTSCHHHHHHHHHHHHT----TSCSEEEES--SCCSTTCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC-------CEEEEECCCCHHHHHHHHHHHHC----CCCcEEEEC--CchhcCcc
Confidence 456899999999999999999876532 22333332 22456678888885 566799987 68999999
Q ss_pred CCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEec
Q 004910 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADK 682 (724)
Q Consensus 610 ~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~ 682 (724)
+|+ ++.||..++|.. .....|++||.-|....--+++++++
T Consensus 97 i~~--~~~Vi~~d~p~~------------------------------~~~~~qr~GR~~R~g~~g~~~~~~~~ 137 (172)
T 1t5i_A 97 IER--VNIAFNYDMPED------------------------------SDTYLHRVARAGRFGTKGLAITFVSD 137 (172)
T ss_dssp GGG--CSEEEESSCCSS------------------------------HHHHHHHHHHHTGGGCCCEEEEEECS
T ss_pred hhh--CCEEEEECCCCC------------------------------HHHHHHHhcccccCCCCcEEEEEEcC
Confidence 986 678998887731 12345888999887655344555543
No 90
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.67 E-value=0.00035 Score=68.35 Aligned_cols=107 Identities=19% Similarity=0.238 Sum_probs=75.2
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD 609 (724)
.++.+|||+++....+.+++.+...++ ....+.+. ....+...++.|++ |+..||+++ ..+.+|||
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~-------~~~~lhg~~~~~~r~~~~~~f~~----g~~~vlvaT--~~~~~Gid 96 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLRLGH-------PAQALHGDLSQGERERVLGAFRQ----GEVRVLVAT--DVAARGLD 96 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHHTC-------CEEEECSSSCHHHHHHHHHHHHS----SSCCEEEEC--TTTTCSSS
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCC-------CEEEEECCCCHHHHHHHHHHHHC----CCCeEEEec--ChhhcCCC
Confidence 478999999999999999998876432 22333332 22456678888875 566799987 68999999
Q ss_pred CCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEec
Q 004910 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADK 682 (724)
Q Consensus 610 ~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~ 682 (724)
+|+ ++.||..++|.. .....|.+||.-|....--+++++++
T Consensus 97 i~~--v~~Vi~~~~p~~------------------------------~~~~~qr~GR~gR~g~~g~~~~l~~~ 137 (212)
T 3eaq_A 97 IPQ--VDLVVHYRLPDR------------------------------AEAYQHRSGRTGRAGRGGRVVLLYGP 137 (212)
T ss_dssp CCC--BSEEEESSCCSS------------------------------HHHHHHHHTTBCCCC--BEEEEEECG
T ss_pred Ccc--CcEEEECCCCcC------------------------------HHHHHHHhcccCCCCCCCeEEEEEch
Confidence 986 778998887742 12345999999998655334455544
No 91
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.58 E-value=0.00038 Score=81.62 Aligned_cols=67 Identities=16% Similarity=0.275 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
...+.|.+.+..+. .+...+|.+|+|||||..... .+...... .+. +|+++++|+.-.+++.+.+..
T Consensus 356 ~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~-~i~~l~~~-~~~-~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 356 DLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLARQ-GNG-PVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHH-HHHHHHTT-CSS-CEEEEESSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHH-HHHHHHHc-CCC-cEEEEcCcHHHHHHHHHHHHH
Confidence 35789998766553 357899999999999976443 33333322 245 899999999999998887654
No 92
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00037 Score=81.83 Aligned_cols=67 Identities=18% Similarity=0.297 Sum_probs=49.0
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
...+.|.+.+..+. .+...+|.||+|||||..... .+.+.... .+. +|+++|+|+...+++.+.+..
T Consensus 360 ~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-~~~-~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 360 QLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-HKD-RILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHH-HHHHHHHH-HCC-CEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHH-HHHHHHhC-CCC-eEEEEcCcHHHHHHHHHHHHh
Confidence 45699998776553 356899999999999976443 23332221 145 899999999999999887765
No 93
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.43 E-value=3.2e-05 Score=72.95 Aligned_cols=107 Identities=18% Similarity=0.239 Sum_probs=72.8
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD 609 (724)
.++.+|||+++....+.+++.++..++ ....+.+. ...++...++.|++ ++..||+++ ..+++|+|
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~-------~~~~~~g~~~~~~r~~~~~~f~~----g~~~vLvaT--~~~~~Gid 95 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGI-------NNCYLEGEMVQGKRNEAIKRLTE----GRVNVLVAT--DVAARGID 95 (170)
Confidence 346899999999999999998876532 11222221 12345667888875 566799887 68999999
Q ss_pred CCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEec
Q 004910 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADK 682 (724)
Q Consensus 610 ~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~ 682 (724)
+|+ ++.||..++|... ....|++||.-|....--++++++.
T Consensus 96 ~~~--~~~Vi~~~~p~~~------------------------------~~~~qr~GR~~R~g~~g~~~~~~~~ 136 (170)
T 2yjt_D 96 IPD--VSHVFNFDMPRSG------------------------------DTYLHRIGRTARAGRKGTAISLVEA 136 (170)
Confidence 997 7789988877421 1234899999997654333444443
No 94
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.14 E-value=0.0025 Score=65.67 Aligned_cols=107 Identities=18% Similarity=0.231 Sum_probs=72.9
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD 609 (724)
.++.+|||+++....+.+++.+...++ ....+.+. .......+++.|+. |+..||+++ ..+.+|||
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~g~-------~~~~lhg~l~~~~r~~~~~~f~~----g~~~vLVaT--~va~~Gid 93 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRLGH-------PAQALHGDMSQGERERVMGAFRQ----GEVRVLVAT--DVAARGLD 93 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTTTC-------CEEEECSCCCTHHHHHHHHHHHH----TSCCEEEEC--STTTCSTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHhhc----CCceEEEEe--chhhcCcc
Confidence 378999999999999999999876532 22333332 12456778899986 567799987 68999999
Q ss_pred CCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEec
Q 004910 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADK 682 (724)
Q Consensus 610 ~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~ 682 (724)
+++ ++.||..++|... ....|.+||.=|....--++.++.+
T Consensus 94 i~~--v~~VI~~d~p~s~------------------------------~~y~Qr~GRagR~g~~G~~i~l~~~ 134 (300)
T 3i32_A 94 IPQ--VDLVVHYRMPDRA------------------------------EAYQHRSGRTGRAGRGGRVVLLYGP 134 (300)
T ss_dssp CCC--CSEEEESSCCSST------------------------------THHHHHHTCCC-----CEEEEEECS
T ss_pred ccc--eeEEEEcCCCCCH------------------------------HHHHHHccCcCcCCCCceEEEEeCh
Confidence 996 6789988877521 1235899999997655334445543
No 95
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.12 E-value=0.0015 Score=71.35 Aligned_cols=56 Identities=16% Similarity=0.159 Sum_probs=47.4
Q ss_pred HHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHh
Q 004910 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 31 ~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
++.+++++++.||||+|||++|+.|++..+... +. +++|.+||++|..|+.+.++.
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~-~~lil~Ptr~La~Q~~~~l~~ 59 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RL-RTLVLAPTRVVLSEMKEAFHG 59 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTTT
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CC-eEEEEcchHHHHHHHHHHHhc
Confidence 355788999999999999999999988765543 45 899999999999999987664
No 96
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=97.09 E-value=9.5e-05 Score=82.03 Aligned_cols=114 Identities=17% Similarity=0.219 Sum_probs=0.0
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeC-CCchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET-QDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~-~~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD 609 (724)
..+.++||++|....+.++..+...+. ...++.+ .....+..+++.|++ |+..||+|+ ..+++|||
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~~-------~v~~lh~~~~~~~R~~~~~~f~~----g~~~iLv~T--~~~~~GlD 398 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEGH-------QVALLSGEMMVEQRAAVIERFRE----GKEKVLVTT--NVCARGID 398 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCCc-------cEEEecCCCCHHHHHHHHHHHHc----CCCcEEEEc--cccccCCc
Confidence 347899999999999999998876432 1112211 112345667888875 566799987 58999999
Q ss_pred CCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEecc
Q 004910 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKR 683 (724)
Q Consensus 610 ~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~R 683 (724)
+|+ ++.||..++|..... + .......|.+||.-|....--+++++++.
T Consensus 399 ip~--v~~VI~~d~p~~~~~---------------------~---~s~~~~~Qr~GRagR~g~~G~~i~~~~~~ 446 (479)
T 3fmp_B 399 VEQ--VSVVINFDLPVDKDG---------------------N---PDNETYLHRIGRTGRFGKRGLAVNMVDSK 446 (479)
T ss_dssp --------------------------------------------------------------------------
T ss_pred ccc--CCEEEEecCCCCCcc---------------------C---CCHHHHHHHhcccccCCCCceEEEEEcCc
Confidence 997 666887887753210 0 12345679999999976654456666654
No 97
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=97.02 E-value=0.0015 Score=75.20 Aligned_cols=71 Identities=17% Similarity=0.127 Sum_probs=54.6
Q ss_pred CCCHHHH-----HHHHHHH--HHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHH
Q 004910 16 NIYPEQY-----SYMLELK--RALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (724)
Q Consensus 16 ~~r~~Q~-----e~~~~v~--~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~ 88 (724)
.|+|.|. +.+..+. +++.+++++++.||||+|||++|+.|++..+... +. +++|.+||++|..|+.+.++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~--~~-~~lilaPTr~La~Q~~~~l~ 291 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQK--RL-RTAVLAPTRVVAAEMAEALR 291 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHT--TC-CEEEEESSHHHHHHHHHHTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CC-cEEEEccHHHHHHHHHHHHh
Confidence 4678888 5554443 3445789999999999999999999988765543 45 89999999999999988765
Q ss_pred h
Q 004910 89 L 89 (724)
Q Consensus 89 ~ 89 (724)
.
T Consensus 292 ~ 292 (673)
T 2wv9_A 292 G 292 (673)
T ss_dssp T
T ss_pred c
Confidence 4
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.90 E-value=0.003 Score=69.51 Aligned_cols=71 Identities=20% Similarity=0.258 Sum_probs=53.8
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHH
Q 004910 11 YFPYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTL 84 (724)
Q Consensus 11 ~Fp~~~~r~~Q~e~~~~v~~~l~~~~-~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~ 84 (724)
+.+|..+.+.|.+.+..+..++.+++ +++|.||.|||||... ...+.++.... .. +|+++|+|....+.+-
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~-~~-~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG-ET-GIILAAPTHAAKKILS 91 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT-CC-CEEEEESSHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC-Cc-eEEEecCcHHHHHHHH
Confidence 35677788999999999999998876 9999999999999643 34455554442 24 7999999987655443
No 99
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.79 E-value=0.0022 Score=74.53 Aligned_cols=85 Identities=14% Similarity=0.179 Sum_probs=57.6
Q ss_pred CCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC---------CchhHHHHHHHHHHhccCCCCeEEEEeecC
Q 004910 532 PDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ---------DVVETTLALDNYRKACDCGRGAVFFSVARG 602 (724)
Q Consensus 532 ~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~---------~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g 602 (724)
++.+|||+++....+.+++.+.....+.. .+.+...+.+. ...++..+++.|++ |+..||+|+ .
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~-~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~----g~~~VLVaT--~ 472 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAE-VGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT----GKINLLIAT--T 472 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-------CCSEEE--C
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccc-cCcceEEEECCCCccCCCCCCHHHHHHHHHHHhc----CCCcEEEEc--c
Confidence 68999999999999999999886411000 01122333332 23456678888875 566799988 5
Q ss_pred cccccccCCCCCceEEEEEccCC
Q 004910 603 KVAEGIDFDRHYGRLVIMFGVPF 625 (724)
Q Consensus 603 ~~~EGiD~~~~~~r~vii~glPf 625 (724)
.++||||+| .++.||..++|.
T Consensus 473 ~~~~GIDip--~v~~VI~~d~p~ 493 (699)
T 4gl2_A 473 VAEEGLDIK--ECNIVIRYGLVT 493 (699)
T ss_dssp SCCTTSCCC--SCCCCEEESCCC
T ss_pred ccccCCccc--cCCEEEEeCCCC
Confidence 899999999 578899988774
No 100
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.67 E-value=0.0031 Score=69.54 Aligned_cols=94 Identities=20% Similarity=0.260 Sum_probs=69.1
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~ 610 (724)
.++.+|||+++...++.+.+.+... ++.-.....++..+++.|++ ++..||+++ ..+.+|+|+
T Consensus 348 ~~~k~lvF~~~~~~~~~l~~~l~~~-----------~~~g~~~~~~R~~~~~~F~~----g~~~vLv~T--~~~~~Gldl 410 (472)
T 2fwr_A 348 RKDKIIIFTRHNELVYRISKVFLIP-----------AITHRTSREEREEILEGFRT----GRFRAIVSS--QVLDEGIDV 410 (472)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTTCC-----------BCCSSSCSHHHHTHHHHHHH----SSCSBCBCS--SCCCSSSCS
T ss_pred CCCcEEEEECCHHHHHHHHHHhCcc-----------eeeCCCCHHHHHHHHHHHhC----CCCCEEEEc--CchhcCccc
Confidence 4679999999999998888776421 11111223456778999986 566788876 689999999
Q ss_pred CCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCC
Q 004910 611 DRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKAD 673 (724)
Q Consensus 611 ~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D 673 (724)
|+ ++.||+...|.. | ..+.|++||+-|..+.
T Consensus 411 p~--~~~Vi~~~~~~s-~-----------------------------~~~~Q~~GR~~R~g~~ 441 (472)
T 2fwr_A 411 PD--ANVGVIMSGSGS-A-----------------------------REYIQRLGRILRPSKG 441 (472)
T ss_dssp CC--BSEEEEECCSSC-C-----------------------------HHHHHHHHHSBCCCTT
T ss_pred cc--CcEEEEECCCCC-H-----------------------------HHHHHHHhhccCCCCC
Confidence 86 678998886632 1 3567999999998865
No 101
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.64 E-value=0.012 Score=67.54 Aligned_cols=76 Identities=18% Similarity=0.128 Sum_probs=60.4
Q ss_pred eeeeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHH
Q 004910 8 VTVYFPYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 8 ~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~-~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
..+.=||+ |+..|.+.+.++.+.+.++. ..++.+.||+|||+.. +.+. ... ++ +++|.|++..+..|+.+|
T Consensus 5 ~~~~~~~~-p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~--a~~~-~~~---~~-~~lvv~~~~~~A~~l~~e 76 (661)
T 2d7d_A 5 FELVSKYQ-PQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTV--SNLI-KEV---NK-PTLVIAHNKTLAGQLYSE 76 (661)
T ss_dssp CCCCCSCC-CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHH--HHHH-HHH---CC-CEEEECSSHHHHHHHHHH
T ss_pred ceeecCCC-CCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHH--HHHH-HHh---CC-CEEEEECCHHHHHHHHHH
Confidence 34555887 59999999999999998885 5778899999999854 2222 221 35 799999999999999999
Q ss_pred HHhhh
Q 004910 87 LKLLH 91 (724)
Q Consensus 87 l~~l~ 91 (724)
++.+.
T Consensus 77 l~~~~ 81 (661)
T 2d7d_A 77 FKEFF 81 (661)
T ss_dssp HHHHC
T ss_pred HHHHc
Confidence 99874
No 102
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=96.48 E-value=0.0028 Score=69.68 Aligned_cols=57 Identities=18% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHH
Q 004910 29 KRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (724)
Q Consensus 29 ~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~ 88 (724)
.+++.+++++++.||||+|||++|++|++..+... +. +++|.+||+++..|+.+.+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~--~~-~~lvl~Ptr~La~Q~~~~l~ 71 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQ--RL-RTAVLAPTRVVAAEMAEALR 71 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHT--TC-CEEEEECSHHHHHHHHHHTT
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhC--CC-cEEEECchHHHHHHHHHHhc
Confidence 55677889999999999999999999998766543 45 89999999999999887654
No 103
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.41 E-value=0.015 Score=66.89 Aligned_cols=71 Identities=20% Similarity=0.073 Sum_probs=57.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCC-cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 13 PYDNIYPEQYSYMLELKRALDAKG-HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 13 p~~~~r~~Q~e~~~~v~~~l~~~~-~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
||+ |++.|.+.+.++.+.+..+. ..++.+.||+|||+.+. .+. ... ++ +++|.|++..+..|+.+|++.+.
T Consensus 6 ~~~-~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a--~~~-~~~---~~-~~lvv~~~~~~A~ql~~el~~~~ 77 (664)
T 1c4o_A 6 GPS-PKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMA--KVI-EAL---GR-PALVLAPNKILAAQLAAEFRELF 77 (664)
T ss_dssp SCC-CCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHH--HHH-HHH---TC-CEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCC-CCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHH--HHH-HHh---CC-CEEEEecCHHHHHHHHHHHHHHC
Confidence 564 69999999999999998885 57788999999999653 222 211 35 79999999999999999999873
No 104
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=96.27 E-value=0.01 Score=66.48 Aligned_cols=99 Identities=17% Similarity=0.243 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcc-cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeC---------CCchhHHHHHHHHHHh
Q 004910 518 RNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (724)
Q Consensus 518 ~~~~~~i~~~~~~-~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~---------~~~~~~~~~~~~f~~~ 587 (724)
..+.+.|.+.... .++.+|||+++....+.+++.+...+....+ +...+.+ ....++..++++|++.
T Consensus 374 ~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 450 (555)
T 3tbk_A 374 RDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFL---KPGILTGRGRTNRATGMTLPAQKCVLEAFRAS 450 (555)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTC---CEEECCC-------------------------
T ss_pred HHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCce---eeeEEEecCCcccccccCHHHHHHHHHHHhcC
Confidence 4555556555443 4589999999999999999999875421111 1111111 1113456678888751
Q ss_pred ccCCCCeEEEEeecCcccccccCCCCCceEEEEEccCCC
Q 004910 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (724)
Q Consensus 588 ~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp 626 (724)
|+-.||+++ ..+.+|||+| .++.||..++|..
T Consensus 451 ---g~~~vLvaT--~~~~~GlDlp--~v~~VI~~d~p~s 482 (555)
T 3tbk_A 451 ---GDNNILIAT--SVADEGIDIA--ECNLVILYEYVGN 482 (555)
T ss_dssp ----CCSEEEEC--CCTTCCEETT--SCSEEEEESCCSS
T ss_pred ---CCeeEEEEc--chhhcCCccc--cCCEEEEeCCCCC
Confidence 455799877 6899999999 5889999998753
No 105
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.26 E-value=0.0086 Score=68.14 Aligned_cols=67 Identities=16% Similarity=0.036 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCcchH--HHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKT--IALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKT--la~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.+.|.+.+..+. .++.+++.+|+||||| ++++++++.-... ..+. +|++++||.....|+-+.+...
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~-~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERC-RIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCC-CEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCC-eEEEEeCChhHHHHHHHHHHHH
Confidence 477988776544 5789999999999999 7777776643211 1234 8999999999999988766554
No 106
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=96.26 E-value=0.0073 Score=67.80 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhc-ccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeC---------CCchhHHHHHHHHHHh
Q 004910 518 RNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (724)
Q Consensus 518 ~~~~~~i~~~~~-~~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~---------~~~~~~~~~~~~f~~~ 587 (724)
..+.+.+.+... ..++.+|||+++....+.+.+.+.+...... .+...+-+ ....++..++++|++.
T Consensus 375 ~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~ 451 (556)
T 4a2p_A 375 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNY---IKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS 451 (556)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGS---CCEEC----------------------------
T ss_pred HHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcce---eeeeEEEccCCcccccccCHHHHHHHHHHhccc
Confidence 445555555443 3467999999999999999999876421100 01111111 1113456678888751
Q ss_pred ccCCCCeEEEEeecCcccccccCCCCCceEEEEEccCC
Q 004910 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625 (724)
Q Consensus 588 ~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 625 (724)
|+-.||+++ ..+.+|||+|+ ++.||...+|.
T Consensus 452 ---g~~~vLvaT--~~~~~GiDip~--v~~VI~~d~p~ 482 (556)
T 4a2p_A 452 ---KDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 482 (556)
T ss_dssp -----CCEEEEE--C-------------CEEEEETCCS
T ss_pred ---CceEEEEEc--CchhcCCCchh--CCEEEEeCCCC
Confidence 455699988 58999999997 88999988774
No 107
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=96.01 E-value=0.037 Score=61.31 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCC-chhHHHHHHHHHHhccCCCCeEEE
Q 004910 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGAVFF 597 (724)
Q Consensus 519 ~~~~~i~~~~~~~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~~~~f~~~~~~~~~~vL~ 597 (724)
.+.+.+.+... .+..++||+.+...++.+.+.+... .+....++.+.. ..++..++++|++. .....+|+
T Consensus 329 ~l~~~l~~~~~-~~~k~lvF~~~~~~~~~l~~~l~~~------~~~~~~~~~g~~~~~~R~~~~~~F~~~--~~~~vil~ 399 (500)
T 1z63_A 329 RTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKE------LNTEVPFLYGELSKKERDDIISKFQNN--PSVKFIVL 399 (500)
T ss_dssp HHHHHHHHHHT-TTCCEEEECSCHHHHHHHHHHHHHH------HTCCCCEEETTSCHHHHHHHHHHHHHC--TTCCCCEE
T ss_pred HHHHHHHHHHc-cCCcEEEEEehHHHHHHHHHHHHHh------hCCCeEEEECCCCHHHHHHHHHHhcCC--CCCCEEEE
Confidence 34444444432 4678999999999999988888652 012334444433 24567789999872 11223666
Q ss_pred EeecCcccccccCCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEE
Q 004910 598 SVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGM 676 (724)
Q Consensus 598 ~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~ 676 (724)
++ ....+|+|+++ +..||+...|+-+ ....|++||+.|-.+..-+
T Consensus 400 st--~~~~~Glnl~~--~~~vi~~d~~~~~------------------------------~~~~Q~~gR~~R~Gq~~~v 444 (500)
T 1z63_A 400 SV--KAGGFGINLTS--ANRVIHFDRWWNP------------------------------AVEDQATDRVYRIGQTRNV 444 (500)
T ss_dssp EC--CCC-CCCCCTT--CSEEEESSCCSCC---------------------------------CHHHHTTTTTTTTSCE
T ss_pred ec--ccccCCCchhh--CCEEEEeCCCCCc------------------------------chHHHHHHHHHHcCCCCee
Confidence 65 57999999986 7889998877532 1235999999998776554
No 108
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=95.99 E-value=0.019 Score=68.89 Aligned_cols=98 Identities=14% Similarity=0.177 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhc-ccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeC---------CCchhHHHHHHHHHHh
Q 004910 518 RNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (724)
Q Consensus 518 ~~~~~~i~~~~~-~~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~---------~~~~~~~~~~~~f~~~ 587 (724)
..+.+.|.+... ..++.+|||+++...++.+.+.+.+......+ +..++-+ ....++..++++|++
T Consensus 616 ~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~i---k~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~- 691 (936)
T 4a2w_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI---KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT- 691 (936)
T ss_dssp HHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSC---CCEEC---------------------------
T ss_pred HHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCcccccc---ceeEEecCCCcccCCCCCHHHHHHHHHHhhc-
Confidence 455555655443 34579999999999999999998864110000 1011101 111345667888875
Q ss_pred ccCCCCeEEEEeecCcccccccCCCCCceEEEEEccCC
Q 004910 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625 (724)
Q Consensus 588 ~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 625 (724)
.|+-.||+++ ..+.||||+|+ ++.||...+|.
T Consensus 692 --~g~~~VLVaT--~~~~eGIDlp~--v~~VI~yD~p~ 723 (936)
T 4a2w_A 692 --SKDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 723 (936)
T ss_dssp ----CCSEEEEE--CC------CCC--CSEEEEESCCS
T ss_pred --cCCeeEEEEe--CchhcCCcchh--CCEEEEeCCCC
Confidence 1455699988 58999999997 89999998874
No 109
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=95.88 E-value=0.032 Score=56.47 Aligned_cols=93 Identities=15% Similarity=0.126 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcccCCcEEEEecChHHHHHHHHHHhhc-ccHHHHhcCcceEEeCCC-chhHHHHHHHHHHhccCCCCe-E
Q 004910 519 NYGKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWNDS-GILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGA-V 595 (724)
Q Consensus 519 ~~~~~i~~~~~~~~g~~Lvlf~Sy~~l~~v~~~~~~~-~~~~~~~~~~~i~~e~~~-~~~~~~~~~~f~~~~~~~~~~-v 595 (724)
.+.+.|.++.. .+..+|||..+...++.+...+... ++ ....+.+.. ..++..++++|++. .+.. +
T Consensus 100 ~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~-------~~~~l~G~~~~~~R~~~i~~F~~~---~~~~v~ 168 (271)
T 1z5z_A 100 RTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNT-------EVPFLYGELSKKERDDIISKFQNN---PSVKFI 168 (271)
T ss_dssp HHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCS-------CCCEECTTSCHHHHHHHHHHHHHC---TTCCEE
T ss_pred HHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCC-------cEEEEECCCCHHHHHHHHHHhcCC---CCCCEE
Confidence 34444444432 4679999999999999998888652 21 233444432 24577789999872 1323 5
Q ss_pred EEEeecCcccccccCCCCCceEEEEEccCCC
Q 004910 596 FFSVARGKVAEGIDFDRHYGRLVIMFGVPFQ 626 (724)
Q Consensus 596 L~~v~~g~~~EGiD~~~~~~r~vii~glPfp 626 (724)
|+++ ....+|+|+++ +..||+..+|+-
T Consensus 169 L~st--~~~g~Glnl~~--a~~VI~~d~~wn 195 (271)
T 1z5z_A 169 VLSV--KAGGFGINLTS--ANRVIHFDRWWN 195 (271)
T ss_dssp EEEC--CTTCCCCCCTT--CSEEEECSCCSC
T ss_pred EEeh--hhhcCCcCccc--CCEEEEECCCCC
Confidence 6554 57899999986 789999998864
No 110
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.80 E-value=0.022 Score=65.45 Aligned_cols=79 Identities=14% Similarity=0.294 Sum_probs=59.6
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD 609 (724)
.++.+|||++|....+.+.+.+.+.++ +..++.+. +..++..+++.|+. |+-.||+|+ ..+.+|+|
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~~~~f~~----g~~~VLvaT--~~l~~GlD 504 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGI-------RARYLHHELDAFKRQALIRDLRL----GHYDCLVGI--NLLREGLD 504 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHT----TSCSEEEES--CCCCTTCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCC-------CceeecCCCCHHHHHHHHHHhhc----CCceEEEcc--ChhhcCcc
Confidence 467999999999999999999987542 22333321 22456677888875 566799987 58999999
Q ss_pred CCCCCceEEEEEccC
Q 004910 610 FDRHYGRLVIMFGVP 624 (724)
Q Consensus 610 ~~~~~~r~vii~glP 624 (724)
+|+ ++.||+...+
T Consensus 505 ip~--v~lVI~~d~d 517 (664)
T 1c4o_A 505 IPE--VSLVAILDAD 517 (664)
T ss_dssp CTT--EEEEEETTTT
T ss_pred CCC--CCEEEEeCCc
Confidence 996 8899999865
No 111
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=95.66 E-value=0.025 Score=65.58 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcc-cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeC---------CCchhHHHHHHHHHHh
Q 004910 518 RNYGKLLVEMVSI-VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIET---------QDVVETTLALDNYRKA 587 (724)
Q Consensus 518 ~~~~~~i~~~~~~-~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~---------~~~~~~~~~~~~f~~~ 587 (724)
..+.+.+.+.... .++.+|||+++....+.+++.+...+.... .+...+.+ ....++..++++|++
T Consensus 383 ~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~---~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~- 458 (696)
T 2ykg_A 383 EDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSF---LKPGILTGRGKTNQNTGMTLPAQKCILDAFKA- 458 (696)
T ss_dssp HHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCS---CCEEC----------------------------
T ss_pred HHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccc---cceeEEEccCCCccccCCCHHHHHHHHHHHHh-
Confidence 4445555544332 346899999999999999999987541100 11122211 111245567888874
Q ss_pred ccCCCCeEEEEeecCcccccccCCCCCceEEEEEccCC
Q 004910 588 CDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625 (724)
Q Consensus 588 ~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 625 (724)
.|+..||+++ ..+.+|||+|+ ++.||..++|.
T Consensus 459 --~g~~~vLVaT--~v~~~GiDip~--v~~VI~~d~p~ 490 (696)
T 2ykg_A 459 --SGDHNILIAT--SVADEGIDIAQ--CNLVILYEYVG 490 (696)
T ss_dssp ----CCSCSEEE--ESSCCC---CC--CSEEEEESCC-
T ss_pred --cCCccEEEEe--chhhcCCcCcc--CCEEEEeCCCC
Confidence 1466789988 48999999997 88999999873
No 112
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=95.41 E-value=0.032 Score=65.77 Aligned_cols=101 Identities=13% Similarity=0.135 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhc-ccCCcEEEEecChHHHHHHHHHHhhcccHHHHh-----cCcceEEe-CCCchhHHHHHHHHHHhccC
Q 004910 518 RNYGKLLVEMVS-IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIM-----QHKLVFIE-TQDVVETTLALDNYRKACDC 590 (724)
Q Consensus 518 ~~~~~~i~~~~~-~~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~-----~~~~i~~e-~~~~~~~~~~~~~f~~~~~~ 590 (724)
..+.+.|.+... ..++.+|||+++...++.+.+.++.......+. +....... +....++..++++|++.
T Consensus 616 ~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~--- 692 (797)
T 4a2q_A 616 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTS--- 692 (797)
T ss_dssp HHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------------
T ss_pred HHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhcc---
Confidence 445555555432 345799999999999999999987631100000 00000000 01113456678888751
Q ss_pred CCCeEEEEeecCcccccccCCCCCceEEEEEccCC
Q 004910 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPF 625 (724)
Q Consensus 591 ~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPf 625 (724)
|+-.||+++ ..+.+|||+|+ ++.||..++|.
T Consensus 693 g~~~vLVaT--~~~~~GIDlp~--v~~VI~yd~p~ 723 (797)
T 4a2q_A 693 KDNRLLIAT--SVADEGIDIVQ--CNLVVLYEYSG 723 (797)
T ss_dssp -CCSEEEEE--CC-------CC--CSEEEEESCCS
T ss_pred CCceEEEEc--CchhcCCCchh--CCEEEEeCCCC
Confidence 455699988 58999999997 88999988764
No 113
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.045 Score=64.47 Aligned_cols=104 Identities=13% Similarity=0.209 Sum_probs=72.4
Q ss_pred ccCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCC-chhHHHHHHHHHHhccCCCC--eEEEEeecCcccc
Q 004910 530 IVPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRG--AVFFSVARGKVAE 606 (724)
Q Consensus 530 ~~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~~~~f~~~~~~~~~--~vL~~v~~g~~~E 606 (724)
..+..+|||......++.+...+...++ ....+.+.. ...+..++++|+.. +.+ .+|+++ ....+
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~g~-------~~~~i~G~~~~~eR~~~i~~F~~~---~~~~~v~LlSt--~agg~ 637 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIKGI-------NFQRLDGTVPSAQRRISIDHFNSP---DSNDFVFLLST--RAGGL 637 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHHTC-------CCEEESTTSCHHHHHHHHHTTSST---TCSCCCEEEEH--HHHTT
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhCCC-------CEEEEeCCCCHHHHHHHHHHhhCC---CCCceEEEEec--ccccC
Confidence 3567999999999999999988875432 334454432 24566788888641 122 366655 47899
Q ss_pred cccCCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEE
Q 004910 607 GIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMM 677 (724)
Q Consensus 607 GiD~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~v 677 (724)
|||+++ +..||+...|+- | ....|++||+.|-.+..-|.
T Consensus 638 GlNL~~--a~~VI~~D~~wn-p-----------------------------~~~~Qa~gR~~RiGQ~k~V~ 676 (800)
T 3mwy_W 638 GINLMT--ADTVVIFDSDWN-P-----------------------------QADLQAMARAHRIGQKNHVM 676 (800)
T ss_dssp TCCCTT--CCEEEESSCCSC-S-----------------------------HHHHHHHTTTSCSSCCSCEE
T ss_pred CCCccc--cceEEEecCCCC-h-----------------------------hhHHHHHHHHHhcCCCceEE
Confidence 999997 889999887753 3 23469999999976655443
No 114
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=95.40 E-value=0.044 Score=65.87 Aligned_cols=72 Identities=19% Similarity=0.210 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 13 p~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
+++ +||.|.+.+..+.. ..+..+++.+|||+|||+.++..+..+... ...+ +++|.+|| ++..|+.+|+.+.
T Consensus 151 ~~~-LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~-g~~~-rvLIVvP~-sLl~Qw~~E~~~~ 222 (968)
T 3dmq_A 151 RTS-LIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLS-GAAE-RVLIIVPE-TLQHQWLVEMLRR 222 (968)
T ss_dssp SSC-CCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHT-SSCC-CEEEECCT-TTHHHHHHHHHHH
T ss_pred CCC-CcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHh-CCCC-eEEEEeCH-HHHHHHHHHHHHH
Confidence 344 69999998776553 124578999999999999998766554433 3345 89999999 9999999998764
No 115
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=95.35 E-value=0.1 Score=59.73 Aligned_cols=80 Identities=10% Similarity=0.128 Sum_probs=57.3
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCC-chhHHHHHHHHHHhccCCCC---eEEEEeecCcccc
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRG---AVFFSVARGKVAE 606 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~~~~f~~~~~~~~~---~vL~~v~~g~~~E 606 (724)
.+..+|||..+...++.+...+...++ ..+.+.+.. ...+..++++|+. ++. .+|+++ ....+
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~g~-------~~~~l~G~~~~~~R~~~i~~F~~----~~~~~~v~L~st--~a~g~ 481 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNRRY-------LYVRLDGTMSIKKRAKIVERFNN----PSSPEFIFMLSS--KAGGC 481 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHTC-------CEEEECSSCCHHHHHHHHHHHHS----TTCCCCEEEEEG--GGSCT
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHCCC-------CEEEEeCCCCHHHHHHHHHHhcC----CCCCcEEEEEec--ccccC
Confidence 467899999999999988888765432 334454432 2456778999985 332 356555 57999
Q ss_pred cccCCCCCceEEEEEccCC
Q 004910 607 GIDFDRHYGRLVIMFGVPF 625 (724)
Q Consensus 607 GiD~~~~~~r~vii~glPf 625 (724)
|+|+++ +..||+...|+
T Consensus 482 Glnl~~--a~~Vi~~d~~w 498 (644)
T 1z3i_X 482 GLNLIG--ANRLVMFDPDW 498 (644)
T ss_dssp TCCCTT--EEEEEECSCCS
T ss_pred Cccccc--CCEEEEECCCC
Confidence 999986 88999988775
No 116
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=95.20 E-value=0.029 Score=65.36 Aligned_cols=120 Identities=16% Similarity=0.144 Sum_probs=70.5
Q ss_pred HHHHHHHHhcccCCcEEEEecChH--------HHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccC
Q 004910 520 YGKLLVEMVSIVPDGIVCFFVSYS--------YMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDC 590 (724)
Q Consensus 520 ~~~~i~~~~~~~~g~~Lvlf~Sy~--------~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~ 590 (724)
+.+.+.+.+ ..++.++||+|+.+ ..+.+++.+.+.. +.+.+..++.+. ...++..+++.|++
T Consensus 567 l~~~i~~~l-~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~----~~~~~v~~lHG~m~~~eR~~v~~~F~~---- 637 (780)
T 1gm5_A 567 VYEFVRQEV-MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV----FPEFKLGLMHGRLSQEEKDRVMLEFAE---- 637 (780)
T ss_dssp HHHHHHHHT-TTSCCBCCBCCCC--------CHHHHHHHSGGGSC----C---CBCCCCSSSCCSCSHHHHHHHTT----
T ss_pred HHHHHHHHH-hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh----cCCCcEEEEeCCCCHHHHHHHHHHHHC----
Confidence 334444433 24568999998653 3455555554400 001122222222 12356778999975
Q ss_pred CCCeEEEEeecCcccccccCCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccC
Q 004910 591 GRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRS 670 (724)
Q Consensus 591 ~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~ 670 (724)
|+-.||+|+ ..+.+|||+|+ ++.||+.+.|--. ...+.|.+||+=|.
T Consensus 638 G~~~ILVaT--~vie~GIDiP~--v~~VIi~d~~r~~-----------------------------l~~l~Qr~GRaGR~ 684 (780)
T 1gm5_A 638 GRYDILVST--TVIEVGIDVPR--ANVMVIENPERFG-----------------------------LAQLHQLRGRVGRG 684 (780)
T ss_dssp TSSSBCCCS--SCCCSCSCCTT--CCEEEBCSCSSSC-----------------------------TTHHHHHHHTSCCS
T ss_pred CCCeEEEEC--CCCCccccCCC--CCEEEEeCCCCCC-----------------------------HHHHHHHhcccCcC
Confidence 566799877 58999999998 6788887755211 12456999999997
Q ss_pred CCCeEEEEEEe
Q 004910 671 KADYGMMIFAD 681 (724)
Q Consensus 671 ~~D~g~vvllD 681 (724)
...--++++.+
T Consensus 685 g~~g~~ill~~ 695 (780)
T 1gm5_A 685 GQEAYCFLVVG 695 (780)
T ss_dssp STTCEEECCCC
T ss_pred CCCCEEEEEEC
Confidence 65533344443
No 117
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=94.97 E-value=0.041 Score=63.10 Aligned_cols=68 Identities=18% Similarity=0.202 Sum_probs=50.9
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhC-C-CCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-P-ENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~-~-~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
...|.|.+.+. ..+++++|.||.|||||...+.-+ .+.... . ... +|+++|.|+...+++.+.+..+.
T Consensus 9 ~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri-~~l~~~~~~~~~-~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 9 SLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRI-AWLMSVENCSPY-SIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHH-HHHHHTSCCCGG-GEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHH-HHHHHhCCCChh-hEEEEeccHHHHHHHHHHHHHHh
Confidence 45789998775 236799999999999998866543 343332 1 124 89999999999999988877764
No 118
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.15 E-value=0.13 Score=59.11 Aligned_cols=80 Identities=15% Similarity=0.313 Sum_probs=60.5
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCC-CchhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQ-DVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~-~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD 609 (724)
.++.+|||++|....+.+++.+.+.++ +..++.+. +..++..+++.|+. |+-.||+|+ +.+.+|+|
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~gi-------~~~~lh~~~~~~~R~~~l~~f~~----g~~~VLVaT--~~l~~GlD 510 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEIGI-------KVNYLHSEIKTLERIEIIRDLRL----GKYDVLVGI--NLLREGLD 510 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTC-------CEEEECTTCCHHHHHHHHHHHHH----TSCSEEEES--CCCSTTCC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhcCC-------CeEEEeCCCCHHHHHHHHHHHhc----CCeEEEEec--chhhCCcc
Confidence 456899999999999999999987542 22333322 23456678888976 566799987 58999999
Q ss_pred CCCCCceEEEEEccCC
Q 004910 610 FDRHYGRLVIMFGVPF 625 (724)
Q Consensus 610 ~~~~~~r~vii~glPf 625 (724)
+|+ +++||+...+.
T Consensus 511 ip~--v~lVi~~d~d~ 524 (661)
T 2d7d_A 511 IPE--VSLVAILDADK 524 (661)
T ss_dssp CTT--EEEEEETTTTC
T ss_pred cCC--CCEEEEeCccc
Confidence 996 89999999753
No 119
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.34 E-value=0.16 Score=57.01 Aligned_cols=64 Identities=19% Similarity=0.145 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHH
Q 004910 13 PYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (724)
Q Consensus 13 p~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~ 85 (724)
++. ..+.|++.+..+. .++.++|.+|.|||||...- ..+..+... +. +|+++++|......+-+
T Consensus 187 ~~~-L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~--g~-~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 187 RKG-LSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTK-AVADLAESL--GL-EVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TTT-CCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHH-HHHHHHHHT--TC-CEEEEESSHHHHHHHHH
T ss_pred cCC-CCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHH-HHHHHHHhc--CC-eEEEecCcHHHHHHhHh
Confidence 444 4789998776654 56899999999999996532 223333332 45 89999999987766543
No 120
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.29 E-value=0.12 Score=59.56 Aligned_cols=67 Identities=18% Similarity=0.191 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhh-CCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLS-KPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 17 ~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~-~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
..|.|.+.+.. .+++++|.|+.|||||.+...-+...... .-... +|++.|.|+.....+-+.+..+
T Consensus 3 L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~-~IL~lTfT~~Aa~em~~Rl~~~ 70 (673)
T 1uaa_A 3 LNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQAR-HIAAVTFTNKAAREMKERVGQT 70 (673)
T ss_dssp CCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGG-GEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHH-HeEEEeccHHHHHHHHHHHHHH
Confidence 46889987753 36799999999999998766543333322 11234 8999999999988888777665
No 121
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.00 E-value=0.25 Score=47.01 Aligned_cols=34 Identities=21% Similarity=0.115 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHhC------CcEEEEcCCCcchHHHH
Q 004910 19 PEQYSYMLELKRALDAK------GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~------~~~~iEApTGtGKTla~ 52 (724)
+.|.+++..+.+.+.+. ..+++.+|+|||||...
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 47777888888887765 78999999999999753
No 122
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=92.93 E-value=0.37 Score=54.71 Aligned_cols=116 Identities=18% Similarity=0.063 Sum_probs=69.7
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCCchhHHHHHHHHHHhccCCCCeEEEEeecCcccccccC
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFFSVARGKVAEGIDF 610 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~ 610 (724)
.++.+|||+++.+..+.+++.+++.++ +...+.+ +... . +|+ .+...||+++ ..+..|||+
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~-------~v~~lHG-~l~q-~----er~----~~~~~VLVAT--dVaerGIDI 455 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGI-------NAVAYYR-GLDV-S----VIP----TIGDVVVVAT--DALMTGYTG 455 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTC-------CEEEECT-TSCG-G----GSC----SSSCEEEEEC--TTHHHHCCC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCC-------cEEEecC-CCCH-H----HHH----hCCCcEEEEC--ChHHccCCC
Confidence 578999999999999999999987532 2233333 2211 1 122 2445899987 589999997
Q ss_pred CCCCceEEEEEccCCCCC----ccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEEecc
Q 004910 611 DRHYGRLVIMFGVPFQYT----LSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKR 683 (724)
Q Consensus 611 ~~~~~r~vii~glPfp~~----~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvllD~R 683 (724)
+ .+.||..|+..... .||.. + -..-..|.......|.+||.=| .-.|.+.++++.
T Consensus 456 d---V~~VI~~Gl~~~~ViNyDydP~~-----------g--l~~~~~P~s~~syiQRiGRtGR--g~~G~i~lvt~~ 514 (666)
T 3o8b_A 456 D---FDSVIDCNTCVTQTVDFSLDPTF-----------T--IETTTVPQDAVSRSQRRGRTGR--GRRGIYRFVTPG 514 (666)
T ss_dssp C---BSEEEECCEEEEEEEECCCSSSC-----------E--EEEEEEECBHHHHHHHHTTBCS--SSCEEEEESCCC
T ss_pred C---CcEEEecCccccccccccccccc-----------c--cccccCcCCHHHHHHHhccCCC--CCCCEEEEEecc
Confidence 3 89999777432110 00000 0 0000012223456799999999 445775555543
No 123
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.76 E-value=0.21 Score=58.05 Aligned_cols=68 Identities=19% Similarity=0.220 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhC-C-CCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSK-P-ENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~-~-~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
...|.|++.+.. .+++++|.|+.|||||.+...- ++|.... . ... +|++.|-|+.....+-+.+..+.
T Consensus 11 ~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~r-i~~ll~~~~~~p~-~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 11 HLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHR-IAYLMAEKHVAPW-NILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHH-HHHHHHTTCCCGG-GEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHH-HHHHHHhcCCCHH-HeEEEeccHHHHHHHHHHHHHHh
Confidence 357899987643 3579999999999999876654 3444332 1 224 89999999998888877666654
No 124
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=92.29 E-value=0.15 Score=47.69 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHH-----hCCcEEEEcCCCcchHHHH
Q 004910 18 YPEQYSYMLELKRALD-----AKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~-----~~~~~~iEApTGtGKTla~ 52 (724)
.+.|.+....+.+.+. .++.+++-+|+|+|||...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 4688888888777664 4678999999999999643
No 125
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=92.18 E-value=0.47 Score=50.24 Aligned_cols=74 Identities=11% Similarity=0.080 Sum_probs=55.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
.||. +.|.|++++..+. ..+..+++.|-+.|||.....-++.++...+ +. +|+++.+|..|...+++.++.+.
T Consensus 160 ~p~~-L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~-g~-~v~~vA~t~~qA~~vf~~i~~mi 232 (385)
T 2o0j_A 160 IKVQ-LRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DK-AVGILAHKGSMSAEVLDRTKQAI 232 (385)
T ss_dssp EECC-CCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHSSS-SC-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHhCC-CC-eEEEEeCCHHHHHHHHHHHHHHH
Confidence 4666 4899999987663 4577999999999999865554444344432 45 89999999999998988777764
Q ss_pred h
Q 004910 92 N 92 (724)
Q Consensus 92 ~ 92 (724)
+
T Consensus 233 ~ 233 (385)
T 2o0j_A 233 E 233 (385)
T ss_dssp H
T ss_pred H
Confidence 3
No 126
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=91.67 E-value=0.9 Score=54.52 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=41.2
Q ss_pred HHHHHHHHhccCCCCeEEEEeecCcccccccCCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 004910 579 LALDNYRKACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALR 658 (724)
Q Consensus 579 ~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~ 658 (724)
.++++|++ ++--||++| +.+.+|+|.|.- ..+.+ -.|... .
T Consensus 640 ~i~~~Fk~----g~i~ILIvv--d~lltGfDiP~l--~tlyl-Dkpl~~------------------------------~ 680 (1038)
T 2w00_A 640 DLAQRVKN----QDIDLLIVV--GMFLTGFDAPTL--NTLFV-DKNLRY------------------------------H 680 (1038)
T ss_dssp HHHHHHHT----TSSSEEEES--STTSSSCCCTTE--EEEEE-ESCCCH------------------------------H
T ss_pred HHHHHHHc----CCCeEEEEc--chHHhCcCcccc--cEEEE-ccCCCc------------------------------c
Confidence 34455553 566799987 699999999984 44444 445321 2
Q ss_pred HHHHhhcccccCCC---CeEEEE
Q 004910 659 QAAQCVGRVIRSKA---DYGMMI 678 (724)
Q Consensus 659 ~v~Q~~GR~iR~~~---D~g~vv 678 (724)
.+.|++||+-|... .+|.||
T Consensus 681 ~liQaIGRtnR~~~~~K~~G~IV 703 (1038)
T 2w00_A 681 GLMQAFSRTNRIYDATKTFGNIV 703 (1038)
T ss_dssp HHHHHHHTTCCCCCTTCCSEEEE
T ss_pred ceeehhhccCcCCCCCCCcEEEE
Confidence 35699999999764 478766
No 127
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=91.56 E-value=0.55 Score=53.06 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=56.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhhh
Q 004910 12 FPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLLH 91 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l~ 91 (724)
.||. ++|.|+.++..+ ...+..++++|-|+|||.....-++.++...+ +. +|+++.+|..|...+++.++.+.
T Consensus 160 ~~~~-l~p~Q~~i~~~l----~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~-~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 160 IKVQ-LRDYQRDMLKIM----SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DK-AVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp BBCC-CCHHHHHHHHHH----HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SC-EEEEEESSHHHHHHHHHHHHHHH
T ss_pred ccCc-CCHHHHHHHHhh----ccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CC-eEEEEECCHHHHHHHHHHHHHHH
Confidence 5676 589999998876 24578999999999999865544444444333 45 89999999999999998777664
No 128
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.26 E-value=0.14 Score=46.13 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 23 e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
++...+..+...+.++++.+|+|||||..
T Consensus 12 ~~~~~~~~~a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 12 QYRRRLQQLSETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp HHHHHHHHHTTCCSCEEEESSTTSSHHHH
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCCHHHH
Confidence 34444444445667999999999999974
No 129
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=90.64 E-value=0.13 Score=53.37 Aligned_cols=35 Identities=29% Similarity=0.277 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHH
Q 004910 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~ 52 (724)
..+|.+.+..+..++..++++++.+|+|||||...
T Consensus 29 i~g~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 29 VVGQKYMINRLLIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp CCSCHHHHHHHHHHHHHTCCEEEESCCCHHHHHHH
T ss_pred eeCcHHHHHHHHHHHHcCCeEEEECCCCCcHHHHH
Confidence 35788888999999999999999999999999743
No 130
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=90.63 E-value=0.34 Score=59.75 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCC----CCCceEEEEccchhhHHHHHHHHHh
Q 004910 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKP----ENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 17 ~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~----~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
+.|.|.+.+.. .+++++|.|+.|||||.+.+--++ +..... ... +|++.|.|++....+-+.+..
T Consensus 11 ~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~-~ll~~~~~~~~~~-~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 11 WTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMI-RKITAEENPIDVD-RLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp CCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHH-HHHSCSSSCCCGG-GEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHH-HHHhcCCCCCCcc-ceEEEeccHHHHHHHHHHHHH
Confidence 57999997653 467999999999999998765433 333331 224 899999999888877765544
No 131
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.56 E-value=0.24 Score=44.50 Aligned_cols=28 Identities=14% Similarity=0.086 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 24 YMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 24 ~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
+...+..+...+.++++.+|+|||||..
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHH
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHH
Confidence 3444444445567999999999999974
No 132
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=90.34 E-value=0.15 Score=56.08 Aligned_cols=33 Identities=18% Similarity=0.065 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 19 PEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
-+|.+++..+..++..+.++++.+|+|||||..
T Consensus 25 vGq~~~i~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 25 YERSHAIRLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp SSCHHHHHHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHHHHHHHHhcCCeeEeecCchHHHHHH
Confidence 478888899999999999999999999999984
No 133
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.27 E-value=0.9 Score=46.60 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHh-----CCcEEEEcCCCcchHHHH
Q 004910 19 PEQYSYMLELKRALDA-----KGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~-----~~~~~iEApTGtGKTla~ 52 (724)
+.+.++...+.+.+.+ +..+++-+|||||||...
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 131 ASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp HHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 3566666666677775 578999999999999743
No 134
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=88.22 E-value=0.5 Score=49.09 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=32.4
Q ss_pred CCHHHHHHHHHHHHHHHhCC--c-EEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLELKRALDAKG--H-CLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v~~~l~~~~--~-~~iEApTGtGKTla~L 53 (724)
.+|.|.+....+..++.+++ + .++.+|.|+|||....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIY 42 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHH
Confidence 47999999999999999885 3 8999999999998655
No 135
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=87.29 E-value=0.37 Score=49.09 Aligned_cols=34 Identities=29% Similarity=0.197 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHh----------------CCcEEEEcCCCcchHHHH
Q 004910 19 PEQYSYMLELKRALDA----------------KGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~----------------~~~~~iEApTGtGKTla~ 52 (724)
.+|.+.+..+..++.. ..++++.+|+|||||...
T Consensus 18 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 18 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHH
Confidence 4566677777776654 468999999999999754
No 136
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.22 E-value=0.36 Score=50.83 Aligned_cols=33 Identities=36% Similarity=0.322 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHH-----------------hCCcEEEEcCCCcchHHHH
Q 004910 20 EQYSYMLELKRALD-----------------AKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~-----------------~~~~~~iEApTGtGKTla~ 52 (724)
+|.+.+..+..++. .+.++++.+|+|||||...
T Consensus 19 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 19 GQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHH
Confidence 56677777777773 3468999999999999853
No 137
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=86.92 E-value=0.37 Score=44.75 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCcchHHHH
Q 004910 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~--~~~~iEApTGtGKTla~ 52 (724)
.++.+.+..+.+.+..+ .++++.+|+|||||...
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 25 IGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred ccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 45556666777777655 57999999999999754
No 138
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.39 E-value=0.44 Score=46.06 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhCC---cEEEEcCCCcchHHHH
Q 004910 19 PEQYSYMLELKRALDAKG---HCLLEMPTGTGKTIAL 52 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~~---~~~iEApTGtGKTla~ 52 (724)
-+|.+.+..+..++..++ .++|.+|+|+|||...
T Consensus 26 ~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 26 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHH
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 346667778888888776 6899999999999743
No 139
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=86.10 E-value=0.51 Score=45.01 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEcCCCcchHHHH
Q 004910 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIAL 52 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~~~--~~~iEApTGtGKTla~ 52 (724)
+|.+.+..+.+.+..++ ++++.+|+|+|||...
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 56677778888888763 6999999999999743
No 140
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=86.05 E-value=0.49 Score=48.72 Aligned_cols=36 Identities=8% Similarity=0.074 Sum_probs=24.7
Q ss_pred CHHHHHHHH-HHHHHHHhC--CcEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYML-ELKRALDAK--GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~-~v~~~l~~~--~~~~iEApTGtGKTla~L 53 (724)
|..|.+-+. .+..++..+ .+++|-+|+|||||...-
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~ 63 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVN 63 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHH
Confidence 444554443 555566554 579999999999998654
No 141
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=85.93 E-value=0.66 Score=45.13 Aligned_cols=41 Identities=15% Similarity=0.143 Sum_probs=29.7
Q ss_pred HhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccch
Q 004910 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (724)
Q Consensus 33 ~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~ 77 (724)
..+...++-+|+|+|||.+.|-.+..++.. +. +|+|.++..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~---g~-kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYA---DV-KYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHT---TC-CEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhc---CC-EEEEEEecc
Confidence 345688889999999999888766555432 45 788887654
No 142
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.87 E-value=0.39 Score=44.49 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~--~~~~iEApTGtGKTla~L 53 (724)
.+|.+.+..+.+.+..+ .++++.+|+|||||...-
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 25 IGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHH
T ss_pred hcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHH
Confidence 45556666777777663 579999999999997543
No 143
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=85.24 E-value=0.52 Score=48.37 Aligned_cols=35 Identities=34% Similarity=0.405 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
.+|.+.+..+...+.+++ ++++.+|+|||||...-
T Consensus 28 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp CSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 468888888889998875 79999999999997543
No 144
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.03 E-value=0.65 Score=46.28 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 22 YSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 22 ~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
.++...+..+...+.++++.+|+|||||..
T Consensus 16 ~~~~~~~~~~~~~~~~vll~G~~GtGKt~l 45 (265)
T 2bjv_A 16 LEVLEQVSHLAPLDKPVLIIGERGTGKELI 45 (265)
T ss_dssp HHHHHHHHHHTTSCSCEEEECCTTSCHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEECCCCCcHHHH
Confidence 334444444445567999999999999974
No 145
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=84.86 E-value=0.4 Score=48.99 Aligned_cols=35 Identities=29% Similarity=0.265 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhC-----------CcEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~-----------~~~~iEApTGtGKTla~L 53 (724)
.+|.+.+..+..++... .++++.+|+|||||...-
T Consensus 20 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 20 VGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp CSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHH
Confidence 46777777777777664 479999999999997543
No 146
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=84.38 E-value=2.4 Score=40.89 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHh--CCcEEEEcCCCcchHHHH
Q 004910 20 EQYSYMLELKRALDA--KGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~--~~~~~iEApTGtGKTla~ 52 (724)
.+.+.+..+...... +.++++.+|+|||||...
T Consensus 35 ~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 35 GNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 446777777777664 468999999999999754
No 147
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.44 E-value=0.9 Score=47.20 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHhCCc--EEEEcCCCcchHHHHHH
Q 004910 20 EQYSYMLELKRALDAKGH--CLLEMPTGTGKTIALLS 54 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~~~~--~~iEApTGtGKTla~L~ 54 (724)
+|.+.+..+..++.+++. +++.+|+|+|||....+
T Consensus 29 g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 29 GQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 588888899999998865 99999999999976543
No 148
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=82.30 E-value=3.8 Score=41.98 Aligned_cols=64 Identities=20% Similarity=0.207 Sum_probs=34.6
Q ss_pred eeeCCCCCCC--HHHHHHHHHHHHHHHhC----CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccc
Q 004910 9 TVYFPYDNIY--PEQYSYMLELKRALDAK----GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (724)
Q Consensus 9 ~~~Fp~~~~r--~~Q~e~~~~v~~~l~~~----~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T 76 (724)
...+.|+.+. +.+......+...+... ..+++.+|+|||||...- ++....... +. ++++.+..
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~--~i~~~~~~~-~~-~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQ--AAGNEAKKR-GY-RVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHH--HHHHHHHHT-TC-CEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHH--HHHHHHHHC-CC-EEEEEEHH
Confidence 3345555443 23444444444444443 479999999999997533 222211111 34 67776543
No 149
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.24 E-value=0.72 Score=47.74 Aligned_cols=35 Identities=31% Similarity=0.268 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhC-------CcEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAK-------GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~-------~~~~iEApTGtGKTla~L 53 (724)
-+|.+.+..+...+... .++++.+|+|||||...-
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHH
Confidence 35666666666666542 489999999999998543
No 150
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=80.95 E-value=2.3 Score=43.14 Aligned_cols=18 Identities=39% Similarity=0.370 Sum_probs=15.2
Q ss_pred CcEEEEcCCCcchHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L 53 (724)
.++++.+|+|||||...-
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 369999999999997553
No 151
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=80.71 E-value=0.57 Score=48.69 Aligned_cols=35 Identities=37% Similarity=0.474 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~--~~~~iEApTGtGKTla~L 53 (724)
-+|.+.+..+..++..+ .++++.+|+|||||...-
T Consensus 40 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 40 TAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHH
T ss_pred hCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 36777788888888887 679999999999997543
No 152
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.38 E-value=3.6 Score=43.08 Aligned_cols=34 Identities=26% Similarity=0.109 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHh------CCcEEEEcCCCcchHHHHH
Q 004910 20 EQYSYMLELKRALDA------KGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~------~~~~~iEApTGtGKTla~L 53 (724)
++.+-+..+.+.+.. ...++|.+|+|||||...-
T Consensus 24 gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 24 FREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp TCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHH
Confidence 344444444444433 3569999999999997543
No 153
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=80.35 E-value=1.1 Score=45.74 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 23 e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
++...+..+...+.+++|.+|||||||..
T Consensus 13 ~~~~~~~~~a~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 13 HLLNEIAMVAPSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp HHHHHHHHHCSTTSCEEEESCTTSCHHHH
T ss_pred HHHHHHHHHhCCCCcEEEECCCCchHHHH
Confidence 34444444444567999999999999975
No 154
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=80.06 E-value=0.93 Score=45.93 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.4
Q ss_pred CCcEEEEcCCCcchHHHH
Q 004910 35 KGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~ 52 (724)
...+++.+|+|||||...
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 468999999999999854
No 155
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.72 E-value=0.81 Score=46.01 Aligned_cols=18 Identities=44% Similarity=0.503 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCcchHHHH
Q 004910 35 KGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~ 52 (724)
...+++.+|+|||||...
T Consensus 51 ~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CSEEEEESSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 357999999999999753
No 156
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=79.32 E-value=1.7 Score=41.09 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=29.6
Q ss_pred hCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccc
Q 004910 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T 76 (724)
.++..++.+|+|+|||.+.|--+..+.. .+. +|++.+++
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~---~g~-kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI---AKQ-KIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH---TTC-CEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH---CCC-EEEEEEec
Confidence 3567899999999999988866555542 245 89998877
No 157
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.28 E-value=0.76 Score=47.72 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=26.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEcCCCcchHHHH
Q 004910 12 FPYDNIYPEQYSYMLELKRALD--AKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 12 Fp~~~~r~~Q~e~~~~v~~~l~--~~~~~~iEApTGtGKTla~ 52 (724)
++|.. -.+|.++...+..+.. ...++++.+|+|||||...
T Consensus 21 ~~f~~-i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 21 FPFSA-IVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCGGG-SCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCchh-ccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHH
Confidence 44554 2456666555444443 3468999999999999743
No 158
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.77 E-value=2.3 Score=44.41 Aligned_cols=35 Identities=17% Similarity=0.096 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHhCC----cEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAKG----HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~~----~~~iEApTGtGKTla~L 53 (724)
+.+.+.+..+.+.+..+. .+++.+|+|||||...-
T Consensus 50 ~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 50 LAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 444454555677776653 69999999999998644
No 159
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=78.57 E-value=1.1 Score=48.65 Aligned_cols=36 Identities=36% Similarity=0.395 Sum_probs=29.3
Q ss_pred CHHHHHHH---HHHHHHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYM---LELKRALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~---~~v~~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
.-+|.+.+ ..+..++..++ .+++.+|+|||||...-
T Consensus 28 ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 28 YIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHH
T ss_pred hCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHH
Confidence 35788888 78888888886 49999999999997543
No 160
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=78.25 E-value=1.3 Score=43.28 Aligned_cols=52 Identities=21% Similarity=0.133 Sum_probs=30.9
Q ss_pred HHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHH
Q 004910 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el 87 (724)
+..|...+|.|++|+|||.-.+--+...+... ++ +++|.|-..+ .+|+.+.+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~-~v~~~s~E~~-~~~~~~~~ 78 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GE-PGVFVTLEER-ARDLRREM 78 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CC-CEEEEESSSC-HHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CC-CceeecccCC-HHHHHHHH
Confidence 34457899999999999976654333333322 34 6777654433 33444433
No 161
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=78.14 E-value=1.4 Score=46.54 Aligned_cols=18 Identities=50% Similarity=0.684 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCcchHHHH
Q 004910 35 KGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~ 52 (724)
..++++.+|+|||||...
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 357999999999999754
No 162
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=78.12 E-value=1.7 Score=45.40 Aligned_cols=35 Identities=26% Similarity=0.232 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhCC--c-EEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAKG--H-CLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~~--~-~~iEApTGtGKTla~L 53 (724)
-+|.+.+..+..++.+++ + +++.+|+|||||...-
T Consensus 19 vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHH
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHH
Confidence 467888888888998875 2 7899999999997543
No 163
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=77.25 E-value=1.2 Score=45.59 Aligned_cols=33 Identities=33% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHH-------hCCcEEEEcCCCcchHHHH
Q 004910 20 EQYSYMLELKRALD-------AKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~-------~~~~~~iEApTGtGKTla~ 52 (724)
+|.+.+..+...+. ...++++.+|+|||||...
T Consensus 16 g~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred CHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 44445555555443 1268999999999999754
No 164
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=76.98 E-value=2.7 Score=48.86 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHhCC-----------cEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAKG-----------HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~~-----------~~~iEApTGtGKTla~L 53 (724)
.+|.+.+..+.+++.... ++++.+|||||||...-
T Consensus 494 iGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 494 IGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELAR 539 (758)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHH
Confidence 357888888888887532 59999999999997543
No 165
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=76.41 E-value=1.2 Score=45.31 Aligned_cols=34 Identities=35% Similarity=0.478 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
+|.+.+..+.+.+.+++ ++++.+|+|||||...-
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAI 56 (319)
T ss_dssp SCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHH
Confidence 57788888888887775 79999999999997543
No 166
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.78 E-value=2.3 Score=41.92 Aligned_cols=17 Identities=41% Similarity=0.557 Sum_probs=14.5
Q ss_pred CcEEEEcCCCcchHHHH
Q 004910 36 GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~ 52 (724)
+.+++.+|+|||||...
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 46899999999999743
No 167
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=75.53 E-value=1.8 Score=44.11 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.2
Q ss_pred CCcEEEEcCCCcchHHHH
Q 004910 35 KGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~ 52 (724)
++.+++.+|+|||||...
T Consensus 49 ~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCcCHHHHH
Confidence 357999999999999853
No 168
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=75.53 E-value=1.4 Score=48.15 Aligned_cols=35 Identities=20% Similarity=0.128 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~--~~~~~iEApTGtGKTla~L 53 (724)
-+|.+.+..+.+.+.. ..++++.+|+|||||...-
T Consensus 183 iGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred cCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHH
Confidence 4667777788888854 3589999999999998544
No 169
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.47 E-value=2.9 Score=41.15 Aligned_cols=17 Identities=41% Similarity=0.514 Sum_probs=14.4
Q ss_pred CcEEEEcCCCcchHHHH
Q 004910 36 GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~ 52 (724)
..+++.+|+|||||...
T Consensus 40 ~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45899999999999753
No 170
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=75.32 E-value=2.9 Score=40.63 Aligned_cols=51 Identities=22% Similarity=0.199 Sum_probs=30.4
Q ss_pred HHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHH
Q 004910 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAEL 87 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el 87 (724)
+..|...++.+|+|+|||.-.+.-+...+.. +. +++|.+-..+ ..++.+.+
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~---~~-~v~~~~~e~~-~~~~~~~~ 70 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM---GE-PGIYVALEEH-PVQVRQNM 70 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSSC-HHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc---CC-eEEEEEccCC-HHHHHHHH
Confidence 4556789999999999998655433443332 34 5666553322 34444433
No 171
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=75.20 E-value=3.2 Score=38.79 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=27.9
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccch
Q 004910 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~ 77 (724)
+...++-+|.|+|||..++--+..+... +. ++++.++..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~---g~-~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG---KK-KVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT---TC-EEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEEeecc
Confidence 5678899999999999876544444322 45 888887763
No 172
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=75.13 E-value=1.6 Score=45.15 Aligned_cols=32 Identities=41% Similarity=0.457 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHhC-------CcEEEEcCCCcchHHH
Q 004910 20 EQYSYMLELKRALDAK-------GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~~-------~~~~iEApTGtGKTla 51 (724)
+|......+..++..+ .++++.+|+|+|||..
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTL 67 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHH
Confidence 5666777777777654 6899999999999964
No 173
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=74.97 E-value=1.6 Score=45.78 Aligned_cols=33 Identities=27% Similarity=0.116 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHh--------------CCcEEEEcCCCcchHHHH
Q 004910 20 EQYSYMLELKRALDA--------------KGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~--------------~~~~~iEApTGtGKTla~ 52 (724)
+|.+.+..+.+.+.. .+.+++.+|+|||||..+
T Consensus 88 G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 88 GVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred ChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 455555566655532 357999999999999854
No 174
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=74.32 E-value=2.3 Score=47.98 Aligned_cols=35 Identities=31% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L 53 (724)
-+|.+.+..+..++..+.++++.+|+|||||...-
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHH
Confidence 46788899999999999999999999999997543
No 175
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=74.27 E-value=2.3 Score=43.69 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=33.1
Q ss_pred HHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHH
Q 004910 27 ELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLA 85 (724)
Q Consensus 27 ~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~ 85 (724)
.+...|..|...+|.|++|+|||.-.+.-+...+.. +. +|+|.+-- .-.+|+..
T Consensus 60 ~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~-~vl~~slE-~s~~~l~~ 113 (315)
T 3bh0_A 60 RMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD-VVNLHSLE-MGKKENIK 113 (315)
T ss_dssp HHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TC-EEEEEESS-SCHHHHHH
T ss_pred hhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CC-eEEEEECC-CCHHHHHH
Confidence 333345556789999999999997666555554432 35 77766633 22334444
No 176
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=74.25 E-value=2.5 Score=45.37 Aligned_cols=44 Identities=20% Similarity=0.134 Sum_probs=33.1
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELK 88 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~ 88 (724)
+..++.||.|+|||....- .+ . .+ +++|+|+|+++.+.+.+.++
T Consensus 162 ~v~~I~G~aGsGKTt~I~~----~~--~--~~-~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILS----RV--N--FE-EDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEEECTTSCHHHHHHH----HC--C--TT-TCEEEESCHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHH----Hh--c--cC-CeEEEeCCHHHHHHHHHHhh
Confidence 4678999999999996542 11 1 24 78999999999887776654
No 177
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=73.76 E-value=1.8 Score=44.58 Aligned_cols=32 Identities=25% Similarity=0.203 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHH
Q 004910 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~ 52 (724)
|+.+.+ .+.+++..+..++|.+|.|+|||...
T Consensus 17 R~~el~---~L~~~l~~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 17 REEESR---KLEESLENYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp CHHHHH---HHHHHHHHCSEEEEECCTTSSHHHHH
T ss_pred hHHHHH---HHHHHHhcCCeEEEECCCcCCHHHHH
Confidence 444444 55666666789999999999999743
No 178
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=73.72 E-value=3.7 Score=44.53 Aligned_cols=34 Identities=32% Similarity=0.315 Sum_probs=23.2
Q ss_pred HHHHHHH---HHHHHHHhC----CcEEEEcCCCcchHHHHH
Q 004910 20 EQYSYML---ELKRALDAK----GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 20 ~Q~e~~~---~v~~~l~~~----~~~~iEApTGtGKTla~L 53 (724)
+|.+... .+.+.+..+ +++++.+|+|||||...-
T Consensus 41 G~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 41 GQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp SCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 4444443 445555554 479999999999998544
No 179
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=73.11 E-value=1.5 Score=46.41 Aligned_cols=34 Identities=26% Similarity=0.188 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHH--------------hCCcEEEEcCCCcchHHHH
Q 004910 19 PEQYSYMLELKRALD--------------AKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~--------------~~~~~~iEApTGtGKTla~ 52 (724)
-+|.+.+..+.+.+. ...+++|.+|+|||||...
T Consensus 118 iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 118 AGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 466666667766652 1368999999999999854
No 180
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=73.09 E-value=2.5 Score=43.10 Aligned_cols=35 Identities=14% Similarity=0.053 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEcCCCcchHHHHHH
Q 004910 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALLS 54 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~~~--~~~iEApTGtGKTla~L~ 54 (724)
+|.+.+..+..++++++ +.++.+|.|+|||-....
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLE 37 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHH
Confidence 58888999999999886 689999999999876553
No 181
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=73.09 E-value=3.6 Score=43.08 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 26 LELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 26 ~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
..+.-.+..|+.++|-+|||+|||-
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHH
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHH
Confidence 6777788899999999999999996
No 182
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=72.96 E-value=1.9 Score=46.36 Aligned_cols=33 Identities=30% Similarity=0.229 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHh----------------CCcEEEEcCCCcchHHHH
Q 004910 20 EQYSYMLELKRALDA----------------KGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~----------------~~~~~iEApTGtGKTla~ 52 (724)
+|.++...+..++.+ .+++++.+|+|||||...
T Consensus 19 Gqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 19 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHH
Confidence 566666666666632 368999999999999853
No 183
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=72.64 E-value=2.4 Score=45.85 Aligned_cols=45 Identities=11% Similarity=0.096 Sum_probs=31.7
Q ss_pred HHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccc
Q 004910 28 LKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (724)
Q Consensus 28 v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T 76 (724)
+...|..|...+|-|++|+|||.-.|--+...+.. +. +|+|.+--
T Consensus 190 ~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~-~vl~fSlE 234 (444)
T 3bgw_A 190 MTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DD-VVNLHSLE 234 (444)
T ss_dssp HHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TC-EEEEECSS
T ss_pred hcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CC-EEEEEECC
Confidence 33345556789999999999998777666665543 45 77777643
No 184
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=72.37 E-value=9.9 Score=39.54 Aligned_cols=35 Identities=29% Similarity=0.343 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHh---C---C--cEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDA---K---G--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~---~---~--~~~iEApTGtGKTla~L 53 (724)
.++.+-+..+.+++.. + . +++|.+|+|||||...-
T Consensus 20 ~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 20 PHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLR 62 (389)
T ss_dssp TTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHH
Confidence 3444444455555543 2 4 79999999999998543
No 185
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=72.22 E-value=1.7 Score=44.68 Aligned_cols=34 Identities=29% Similarity=0.222 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHH----------h----CCcEEEEcCCCcchHHHH
Q 004910 19 PEQYSYMLELKRALD----------A----KGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~----------~----~~~~~iEApTGtGKTla~ 52 (724)
.+|.+.+..+.+++. . ...+++.+|+|||||...
T Consensus 21 ~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 21 AGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred cChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 566666667766662 1 246999999999999854
No 186
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=71.68 E-value=1.6 Score=50.88 Aligned_cols=34 Identities=32% Similarity=0.401 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHhC-----------CcEEEEcCCCcchHHHHH
Q 004910 20 EQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~~-----------~~~~iEApTGtGKTla~L 53 (724)
+|.+.+..+..++... .++++.+|||||||...-
T Consensus 462 g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 462 GQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp SCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHH
Confidence 6777777777777542 168999999999997543
No 187
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=71.57 E-value=2.8 Score=43.44 Aligned_cols=47 Identities=9% Similarity=0.158 Sum_probs=32.8
Q ss_pred HHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccc
Q 004910 26 LELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (724)
Q Consensus 26 ~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T 76 (724)
..+...|..|...+|-|++|+|||.-.+--+...+. .+. +|+|.+--
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~-~Vl~fSlE 83 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDR-GVAVFSLE 83 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTC-EEEEEESS
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCC-eEEEEeCC
Confidence 344445666778999999999999877766655554 245 77776643
No 188
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.54 E-value=2.8 Score=46.22 Aligned_cols=34 Identities=29% Similarity=0.295 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHh-------------------CCcEEEEcCCCcchHHHHH
Q 004910 20 EQYSYMLELKRALDA-------------------KGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~-------------------~~~~~iEApTGtGKTla~L 53 (724)
+|.+.+..+.+++.. .+.+++.+|+|||||...-
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHH
Confidence 455666666666654 2579999999999998644
No 189
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=70.94 E-value=9.3 Score=41.06 Aligned_cols=17 Identities=29% Similarity=0.257 Sum_probs=14.8
Q ss_pred CcEEEEcCCCcchHHHH
Q 004910 36 GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~ 52 (724)
.++++.+|+|+|||..+
T Consensus 131 ~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCEEEECSSSSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 48999999999999743
No 190
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=70.87 E-value=1.5 Score=45.91 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHH------hCCcEEEEcCCCcchHHHH
Q 004910 19 PEQYSYMLELKRALD------AKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~------~~~~~~iEApTGtGKTla~ 52 (724)
.++.+.+..+...+. .+.+++|.+|+|||||...
T Consensus 22 ~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 22 PHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp TTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 455566666666662 2368999999999999753
No 191
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=70.66 E-value=2.7 Score=45.43 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEcc
Q 004910 26 LELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (724)
Q Consensus 26 ~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~ 75 (724)
..+...|..|...+|-|++|+|||.-.+.-+...+... +. +|+|.+-
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~-~vl~~sl 237 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKE--GV-GVGIYSL 237 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CC-CEEEEES
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CC-eEEEEEC
Confidence 34444455667899999999999987776555555422 44 6766554
No 192
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.48 E-value=3 Score=42.37 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 20 EQYSYMLELKRALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
+|.+.+..+..++.+++ ++++.+|+|+|||...-
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHH
Confidence 47777888888888764 69999999999997543
No 193
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=70.45 E-value=2.9 Score=46.09 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 23 e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
+++..+.-++..+.+++|-+|||+|||-.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34556666778888999999999999963
No 194
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=69.91 E-value=3 Score=45.15 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccc
Q 004910 26 LELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (724)
Q Consensus 26 ~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T 76 (724)
..+...+..|...+|-||+|+|||.-.+.-+...+... +. +|+|.+--
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~--g~-~Vl~~s~E 241 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT--NE-NVAIFSLE 241 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS--SC-CEEEEESS
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC--CC-cEEEEECC
Confidence 33333455567899999999999987666555555432 44 67776644
No 195
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=69.71 E-value=4.7 Score=38.48 Aligned_cols=29 Identities=28% Similarity=0.277 Sum_probs=19.8
Q ss_pred HHHHHHHHHh---CCcEEEEcCCCcchHHHHH
Q 004910 25 MLELKRALDA---KGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 25 ~~~v~~~l~~---~~~~~iEApTGtGKTla~L 53 (724)
+..+...+.+ ++++++-+|+|||||...+
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ 76 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGM 76 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHH
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHH
Confidence 4444444443 1369999999999998654
No 196
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=68.95 E-value=2 Score=44.91 Aligned_cols=17 Identities=41% Similarity=0.485 Sum_probs=14.6
Q ss_pred CcEEEEcCCCcchHHHH
Q 004910 36 GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~ 52 (724)
..+++.+|+|||||...
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46899999999999854
No 197
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=68.93 E-value=3.3 Score=42.36 Aligned_cols=35 Identities=23% Similarity=0.060 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhCC--c-EEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAKG--H-CLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~~--~-~~iEApTGtGKTla~L 53 (724)
-+|.+.+..+..++..++ + +++.+|+|||||...-
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 477788888888888775 3 5667779999998644
No 198
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=68.66 E-value=2.6 Score=43.31 Aligned_cols=17 Identities=41% Similarity=0.434 Sum_probs=14.6
Q ss_pred CcEEEEcCCCcchHHHH
Q 004910 36 GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~ 52 (724)
+.+++.+|+|||||...
T Consensus 46 ~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLA 62 (322)
T ss_dssp SEEEEESSSSSCHHHHH
T ss_pred ceEEEECCCCccHHHHH
Confidence 56899999999999853
No 199
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=68.53 E-value=1.3 Score=44.00 Aligned_cols=17 Identities=47% Similarity=0.581 Sum_probs=14.4
Q ss_pred CcEEEEcCCCcchHHHH
Q 004910 36 GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~ 52 (724)
+.+++.+|+|||||...
T Consensus 45 ~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp SCCCCBCSSCSSHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 46889999999999854
No 200
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=68.42 E-value=1.5 Score=49.48 Aligned_cols=32 Identities=25% Similarity=0.174 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhCC-------------cEEEEcCCCcchHHH
Q 004910 20 EQYSYMLELKRALDAKG-------------HCLLEMPTGTGKTIA 51 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~~~-------------~~~iEApTGtGKTla 51 (724)
+|.++-..+.-++..+. ++++.+|+|||||..
T Consensus 299 G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 299 GHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQM 343 (595)
T ss_dssp CCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHH
T ss_pred ChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHH
Confidence 45555555555555554 899999999999983
No 201
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=68.19 E-value=2.4 Score=49.27 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~--~~~~iEApTGtGKTla~L 53 (724)
-+|.+.+..+...+..+ .++++.+|+|||||...-
T Consensus 183 iG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 183 IGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp CCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred cCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 56777888888888654 589999999999998544
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=66.77 E-value=2.2 Score=50.37 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhC-----------CcEEEEcCCCcchHHHH
Q 004910 20 EQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~~-----------~~~~iEApTGtGKTla~ 52 (724)
+|.+.+..+..++... .++++.+|||||||...
T Consensus 562 G~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 562 GQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp SCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 5677777777777542 36899999999999754
No 203
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=66.69 E-value=5.9 Score=37.97 Aligned_cols=39 Identities=10% Similarity=0.030 Sum_probs=28.9
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccch
Q 004910 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~ 77 (724)
|...++.+|.|+|||.++|--+..+..+ +. +|++.++.+
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~---g~-kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA---KQ-HAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT---TC-CEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC---CC-EEEEEEecc
Confidence 4567789999999999888766665532 45 899888764
No 204
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=66.68 E-value=4.2 Score=41.11 Aligned_cols=16 Identities=19% Similarity=-0.004 Sum_probs=13.5
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..+++.+|+|||||..
T Consensus 37 ~~lLl~GppGtGKT~l 52 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQ 52 (293)
T ss_dssp SEEEEEECTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3578899999999984
No 205
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=66.48 E-value=5.2 Score=39.67 Aligned_cols=18 Identities=39% Similarity=0.377 Sum_probs=15.1
Q ss_pred CcEEEEcCCCcchHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L 53 (724)
..+++.+|+|||||...-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998543
No 206
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.28 E-value=3 Score=44.71 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=16.5
Q ss_pred CcEEEEcCCCcchHHHHHHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALLSLITS 58 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~ 58 (724)
+-+++-+|+|||||+. +-|++
T Consensus 216 rGvLLyGPPGTGKTll--AkAiA 236 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLL--ARACA 236 (434)
T ss_dssp CEEEEESCTTSSHHHH--HHHHH
T ss_pred CeeEEECcCCCCHHHH--HHHHH
Confidence 4689999999999984 44454
No 207
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=65.81 E-value=5.4 Score=42.81 Aligned_cols=39 Identities=26% Similarity=0.390 Sum_probs=26.7
Q ss_pred CCcEEEEcCCCcchHHHH--HHHHHHHHhhCCCCCceEEEEccchhh
Q 004910 35 KGHCLLEMPTGTGKTIAL--LSLITSYVLSKPENPVKLIYCTRTVHE 79 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~--L~~al~~~~~~~~~~~~vvi~T~T~~l 79 (724)
..|++|-||||+|||.++ +++.+ ... +. +++|.=+.-..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~---~~~--g~-~viv~Dpkge~ 93 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTG---LLR--GD-RMVIVDPNGDM 93 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHH---HHT--TC-EEEEEEETTHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHH---HHC--CC-cEEEEeCCCch
Confidence 469999999999999975 43322 222 34 77777665544
No 208
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=65.62 E-value=4.3 Score=41.85 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 24 YMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 24 ~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+...+.-.+..|+.++|-+|||+|||-
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHH
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHH
Confidence 566777788889999999999999996
No 209
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=65.42 E-value=5.9 Score=37.41 Aligned_cols=40 Identities=20% Similarity=0.192 Sum_probs=29.2
Q ss_pred HHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 31 ~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
+=.+++.+++-.|+|.|||-+.+--++..+. .+. ||.|..
T Consensus 24 ~~~~~g~i~v~tG~GkGKTTaA~GlalRA~g---~G~-rV~~vQ 63 (196)
T 1g5t_A 24 AQEERGIIIVFTGNGKGKTTAAFGTAARAVG---HGK-NVGVVQ 63 (196)
T ss_dssp ---CCCCEEEEESSSSCHHHHHHHHHHHHHH---TTC-CEEEEE
T ss_pred ccccCceEEEECCCCCCHHHHHHHHHHHHHH---CCC-eEEEEE
Confidence 3345578999999999999999877776553 245 888874
No 210
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.32 E-value=3.5 Score=43.69 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=16.6
Q ss_pred CcEEEEcCCCcchHHHHHHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALLSLITS 58 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~ 58 (724)
+-+++-+|+|||||+. +-|++
T Consensus 183 rGvLL~GPPGTGKTll--AkAiA 203 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLL--ARAVA 203 (405)
T ss_dssp CCEEEESCSSSSHHHH--HHHHH
T ss_pred CceEEeCCCCCCHHHH--HHHHH
Confidence 5699999999999984 44454
No 211
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=64.97 E-value=7.2 Score=40.48 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHh------CCcEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDA------KGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~------~~~~~iEApTGtGKTla~L 53 (724)
.++.+-+..+.+.+.. +..++|.+|+|+|||...-
T Consensus 23 ~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 23 PHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp TTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHH
Confidence 3444445555555553 4589999999999997543
No 212
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=64.77 E-value=4.4 Score=40.82 Aligned_cols=48 Identities=8% Similarity=0.022 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEcc
Q 004910 25 MLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (724)
Q Consensus 25 ~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~ 75 (724)
+..+.-.+..|...+|-+|+|+|||.-.+.-+...+.. .+. +|+|.+.
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~--~G~-~v~~~~~ 72 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--MGK-KVGLAML 72 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT--SCC-CEEEEES
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH--cCC-eEEEEeC
Confidence 44555556778899999999999997655444333322 244 6766543
No 213
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=64.66 E-value=5.8 Score=35.56 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=15.8
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.++.+++-+|+|+|||.-
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 678899999999999863
No 214
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=64.52 E-value=3.4 Score=44.61 Aligned_cols=34 Identities=29% Similarity=0.160 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHH--------------hCCcEEEEcCCCcchHHHH
Q 004910 19 PEQYSYMLELKRALD--------------AKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~--------------~~~~~~iEApTGtGKTla~ 52 (724)
.+|.+....+.+++. ..+.+++.+|+|||||...
T Consensus 137 ~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 137 AGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred cCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 355666666666552 1256899999999999854
No 215
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=64.46 E-value=3.2 Score=45.66 Aligned_cols=45 Identities=4% Similarity=-0.096 Sum_probs=29.8
Q ss_pred HHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEcc
Q 004910 28 LKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (724)
Q Consensus 28 v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~ 75 (724)
+...+..|...+|.|++|+|||.-.+--+...+... +. +|+|.+-
T Consensus 235 ~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~--g~-~vl~~s~ 279 (503)
T 1q57_A 235 KTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAM--GK-KVGLAML 279 (503)
T ss_dssp HHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTS--CC-CEEEEES
T ss_pred hhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhc--CC-cEEEEec
Confidence 333455667899999999999987776555544321 44 6666553
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=63.94 E-value=3.1 Score=45.53 Aligned_cols=17 Identities=47% Similarity=0.554 Sum_probs=14.9
Q ss_pred CcEEEEcCCCcchHHHH
Q 004910 36 GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~ 52 (724)
..+++.+|+|||||+..
T Consensus 239 ~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CcEEEECcCCCCHHHHH
Confidence 57999999999999854
No 217
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.88 E-value=3.5 Score=44.16 Aligned_cols=22 Identities=36% Similarity=0.389 Sum_probs=16.6
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSY 59 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~ 59 (724)
+-+++.+|+|||||+. +-|++.
T Consensus 207 rGiLL~GPPGtGKT~l--akAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTML--VKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHH--HHHHHH
T ss_pred ceEEEECCCCCCHHHH--HHHHHH
Confidence 3489999999999984 445543
No 218
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=63.34 E-value=3.6 Score=43.99 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
.+.+.+.+..+. ...++.++|-+|||+|||-.
T Consensus 152 ~~~~~~~L~~l~--~~~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 152 TAHNHDNFRRLI--KRPHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp CHHHHHHHHHHH--TSSSEEEEEECSTTSCHHHH
T ss_pred CHHHHHHHHHHH--HhcCCeEEEECCCCCCHHHH
Confidence 356666666662 24556889999999999963
No 219
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.12 E-value=3.8 Score=44.01 Aligned_cols=22 Identities=36% Similarity=0.412 Sum_probs=16.8
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSY 59 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~ 59 (724)
+-+++-+|+|||||+. +-|++.
T Consensus 216 rGvLL~GPPGtGKTll--AkAiA~ 237 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLL--AKAVAA 237 (437)
T ss_dssp CEEEEESCTTSSHHHH--HHHHHH
T ss_pred CeEEEECCCCCcHHHH--HHHHHH
Confidence 5689999999999985 334443
No 220
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=63.04 E-value=7.5 Score=38.65 Aligned_cols=17 Identities=35% Similarity=0.175 Sum_probs=15.0
Q ss_pred cEEEEcCCCcchHHHHH
Q 004910 37 HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L 53 (724)
.+++-+|+|||||+.+.
T Consensus 106 ~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 69999999999998655
No 221
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=62.79 E-value=8.4 Score=42.19 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=27.1
Q ss_pred hCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccch
Q 004910 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~ 77 (724)
++.|++|-++||+|||...-.-+++.+.....+.+++++.=+..
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 35689999999999998754333333322222344666665553
No 222
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=62.66 E-value=5.6 Score=37.96 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 14 YDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 14 ~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
..+.+.+|....+. +..|..+.|-+|.|+|||.-
T Consensus 5 i~pk~~g~~~~l~~----i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 5 IRPKTLGQKHYVDA----IDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp CCCCSHHHHHHHHH----HHHCSEEEEECCTTSSTTHH
T ss_pred cccCCHhHHHHHHh----ccCCCEEEEECCCCCCHHHH
Confidence 34445667665544 57899999999999999953
No 223
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=62.61 E-value=5.7 Score=37.92 Aligned_cols=40 Identities=30% Similarity=0.278 Sum_probs=24.7
Q ss_pred HHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 31 ALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 31 ~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
.+..|...++-+|+|+|||.-...-+...+.. +. +|+|.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~-~v~~~~ 58 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD---GD-PCIYVT 58 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHH---TC-CEEEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC---CC-eEEEEE
Confidence 34556789999999999996444333222222 34 566554
No 224
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=62.36 E-value=3.4 Score=43.65 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=22.4
Q ss_pred CHHHHHHHHHHH-HHH-Hh----CCcEEE--EcCCCcchHHHH
Q 004910 18 YPEQYSYMLELK-RAL-DA----KGHCLL--EMPTGTGKTIAL 52 (724)
Q Consensus 18 r~~Q~e~~~~v~-~~l-~~----~~~~~i--EApTGtGKTla~ 52 (724)
|..+.+.+.... ... .. +..++| .+|+|+|||...
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 555555554443 333 22 347888 999999999754
No 225
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=61.86 E-value=6.4 Score=51.87 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHH
Q 004910 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 17 ~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~ 52 (724)
|++.-..+..-+..++..++++++.+|||||||+..
T Consensus 1249 pT~DT~R~~~ll~~~l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1249 PTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHHTCEEEEECSTTSSHHHHH
T ss_pred eccchHHHHHHHHHHHHCCCeEEEECCCCCCHHHHH
Confidence 455556666667778889999999999999999843
No 226
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=61.72 E-value=10 Score=46.34 Aligned_cols=50 Identities=28% Similarity=0.374 Sum_probs=33.7
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhC--------C-CCCceEEEEccchhhHHHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSK--------P-ENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~--------~-~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
+..+|+|+-|||||.+.-.-.+...... + ... +|++.|=|+.-...+-+.
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~-~ILvvTFT~aAA~EMr~R 75 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVE-ELLVVTFTEAATAELRGR 75 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGG-GEEEEESCHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHH-HEEEEeccHHHHHHHHHH
Confidence 4569999999999987554444443321 1 123 899999998766655443
No 227
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=61.04 E-value=3.4 Score=39.30 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=18.6
Q ss_pred HHHhCCcEEEEcCCCcchHHHHHH
Q 004910 31 ALDAKGHCLLEMPTGTGKTIALLS 54 (724)
Q Consensus 31 ~l~~~~~~~iEApTGtGKTla~L~ 54 (724)
.+..|...++-+|+|+|||.-.+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQ 39 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHH
Confidence 344567899999999999975443
No 228
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=60.41 E-value=3.2 Score=42.99 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHH-HhC--CcEEEEcCCCcchHHHHH
Q 004910 20 EQYSYMLELKRAL-DAK--GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 20 ~Q~e~~~~v~~~l-~~~--~~~~iEApTGtGKTla~L 53 (724)
+|.+.+..+..++ ..+ .++++.+|+|+|||...-
T Consensus 18 g~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 18 HNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp SCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHH
Confidence 5778888888877 555 369999999999997543
No 229
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=60.28 E-value=5.2 Score=45.26 Aligned_cols=59 Identities=17% Similarity=0.183 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHH
Q 004910 16 NIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKT 83 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~ 83 (724)
.+++.|.+.+..+.++. .++.++.|+-|.|||.+ +--+++.+ . . +++|+.||+.-...+
T Consensus 175 ~~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKSa~-lG~~~a~~--~---~-~~~vtAP~~~a~~~l 233 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP--PGVAAVTAARGRGKSAL-AGQLISRI--A---G-RAIVTAPAKASTDVL 233 (671)
T ss_dssp SCCHHHHHHHHHHTTCC--SEEEEEEECTTSSHHHH-HHHHHHHS--S---S-CEEEECSSCCSCHHH
T ss_pred CCCHHHHHHHHHHHHhh--hCeEEEecCCCCCHHHH-HHHHHHHH--H---h-CcEEECCCHHHHHHH
Confidence 35678998887776654 35789999999999943 33333332 1 3 579999998765543
No 230
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=59.70 E-value=3.6 Score=38.09 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=15.3
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.|+.++|.+|+|+|||-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL 21 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHI 21 (180)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 367889999999999963
No 231
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=59.37 E-value=9.3 Score=37.31 Aligned_cols=15 Identities=47% Similarity=0.543 Sum_probs=13.2
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.+++.+|+|+|||..
T Consensus 51 g~ll~G~~G~GKTtl 65 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHL 65 (254)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 489999999999974
No 232
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.33 E-value=4.8 Score=42.91 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=16.3
Q ss_pred CcEEEEcCCCcchHHHHHHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALLSLITS 58 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~ 58 (724)
+-+++-+|+|||||+. +-|++
T Consensus 217 rGvLLyGPPGTGKTlL--AkAiA 237 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLL--AKAVA 237 (437)
T ss_dssp SEEEEESSTTTTHHHH--HHHHH
T ss_pred CCCceECCCCchHHHH--HHHHH
Confidence 4589999999999984 33444
No 233
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=59.32 E-value=8.7 Score=36.20 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=28.0
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccc
Q 004910 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T 76 (724)
++..++-+|.|+|||.-.|-.+-.|..+ +. +|+|.|+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~---~~-kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIA---QY-KCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHT---TC-CEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHc---CC-eEEEEccc
Confidence 5688999999999997766554444332 35 89988866
No 234
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=59.12 E-value=10 Score=36.71 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=24.4
Q ss_pred cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceE-EEEccc
Q 004910 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKL-IYCTRT 76 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~v-vi~T~T 76 (724)
++++-++.|+|||...+.-+...+.. +. +| ++.+-+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~---G~-~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ---GV-RVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT---TC-CEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC---CC-CEEEEEeCC
Confidence 58899999999999887655554432 34 55 444444
No 235
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=58.94 E-value=4.3 Score=43.71 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=16.5
Q ss_pred CcEEEEcCCCcchHHHHHHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALLSLITS 58 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~ 58 (724)
+-+++.+|+|||||+. +-|++
T Consensus 244 rGILLyGPPGTGKTlL--AkAiA 264 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLC--ARAVA 264 (467)
T ss_dssp SEEEECSCTTSSHHHH--HHHHH
T ss_pred CceEeeCCCCCcHHHH--HHHHH
Confidence 5689999999999984 44554
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=58.83 E-value=9.6 Score=38.55 Aligned_cols=37 Identities=30% Similarity=0.351 Sum_probs=22.8
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
++.+++-+|+|+|||-....-|..++.. .++ +|.+..
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~--~G~-~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLE--KHK-KIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHT--TCC-CEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh--cCC-EEEEEe
Confidence 4578889999999996544333333321 245 666654
No 237
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=58.39 E-value=4.3 Score=37.90 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=17.7
Q ss_pred HHHHhCCcEEEEcCCCcchHHH
Q 004910 30 RALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 30 ~~l~~~~~~~iEApTGtGKTla 51 (724)
..+..+..+++++|+|+|||-.
T Consensus 7 ~~~~~~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 7 EDLRKCKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp HHHHHSCEEEEEECTTSSHHHH
T ss_pred cccCCCCEEEEECCCCCCHHHH
Confidence 3445677899999999999963
No 238
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=57.72 E-value=4.1 Score=38.59 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=15.0
Q ss_pred hCCcEEEEcCCCcchHH
Q 004910 34 AKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTl 50 (724)
.++.++|.+|+|+|||-
T Consensus 18 ~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSH 34 (197)
T ss_dssp SCCEEEEECCTTSSHHH
T ss_pred CCCEEEEECcCCCCHHH
Confidence 46789999999999996
No 239
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=57.57 E-value=4.1 Score=38.76 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.4
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.+..+++.+|+|+|||-.
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 467899999999999963
No 240
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=56.19 E-value=8.7 Score=51.28 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 17 IYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 17 ~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
|+..=..+..-+...+..++++++.+|||||||..
T Consensus 1286 PT~DTvR~~~ll~~ll~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1286 PTVDTTRHVDVLHAWLSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCCEEESSTTSSHHHH
T ss_pred cchHHHHHHHHHHHHHHCCCcEEEECCCCCCHHHH
Confidence 34555555656667788899999999999999953
No 241
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=56.17 E-value=14 Score=38.35 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=26.6
Q ss_pred CHHHHHHHHHH-----HHHHHhCCc--EEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYMLEL-----KRALDAKGH--CLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~~v-----~~~l~~~~~--~~iEApTGtGKTla~L 53 (724)
...|.++-+.+ .+++.+|.+ ++.=+.||+|||..+.
T Consensus 61 ~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 61 TVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp TCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 45788877653 345666654 6889999999999865
No 242
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=55.78 E-value=3.5 Score=38.98 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=16.4
Q ss_pred HHhCCcEEEEcCCCcchHH
Q 004910 32 LDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTl 50 (724)
+..+..+++.+|+|+|||-
T Consensus 9 ~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp CCCCCCEEEECCTTSCHHH
T ss_pred cccCCEEEEECCCCCCHHH
Confidence 4467889999999999986
No 243
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=55.66 E-value=9.3 Score=36.76 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=18.8
Q ss_pred HHhCCcEEEEcCCCcchHHHHHHH
Q 004910 32 LDAKGHCLLEMPTGTGKTIALLSL 55 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTla~L~~ 55 (724)
+..|...+|-+|+|+|||.-.+.-
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHH
Confidence 345678999999999999765543
No 244
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=55.63 E-value=10 Score=41.19 Aligned_cols=17 Identities=47% Similarity=0.559 Sum_probs=14.5
Q ss_pred CcEEEEcCCCcchHHHH
Q 004910 36 GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~ 52 (724)
+.+++.+|+|||||+..
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999853
No 245
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=55.60 E-value=3.4 Score=41.05 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 24 YMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 24 ~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
.+..+. +..|+.++|-+|||+|||-
T Consensus 16 vl~~i~--i~~g~~v~i~Gp~GsGKST 40 (261)
T 2eyu_A 16 KVLELC--HRKMGLILVTGPTGSGKST 40 (261)
T ss_dssp HHHHGG--GCSSEEEEEECSTTCSHHH
T ss_pred HHHHHh--hCCCCEEEEECCCCccHHH
Confidence 344444 5677899999999999995
No 246
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=55.60 E-value=20 Score=35.47 Aligned_cols=26 Identities=31% Similarity=0.369 Sum_probs=20.0
Q ss_pred HHhCCcEEEEcCCCcchHHHHHHHHH
Q 004910 32 LDAKGHCLLEMPTGTGKTIALLSLIT 57 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTla~L~~al 57 (724)
+..|...+|-+|+|+|||.-.+.-+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 44567899999999999976655443
No 247
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=55.09 E-value=4.2 Score=38.19 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=16.1
Q ss_pred HhCCcEEEEcCCCcchHHH
Q 004910 33 DAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 33 ~~~~~~~iEApTGtGKTla 51 (724)
..|..+.+.+|+|+|||-.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl 23 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSL 23 (205)
T ss_dssp CCCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECcCCCCHHHH
Confidence 3577899999999999963
No 248
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=54.98 E-value=12 Score=37.12 Aligned_cols=33 Identities=30% Similarity=0.291 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHh-----------CCcEEEEcCCCcchHHH
Q 004910 19 PEQYSYMLELKRALDA-----------KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~-----------~~~~~iEApTGtGKTla 51 (724)
+.+.+-+..+...+.. .+.+++.+|+|||||..
T Consensus 46 ~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl 89 (278)
T 1iy2_A 46 EEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHL 89 (278)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHH
Confidence 4455555555555432 13489999999999974
No 249
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=54.58 E-value=9 Score=36.24 Aligned_cols=18 Identities=39% Similarity=0.783 Sum_probs=15.1
Q ss_pred cEEEEcCCCcchHHHHHH
Q 004910 37 HCLLEMPTGTGKTIALLS 54 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L~ 54 (724)
..++.+|.|+|||.....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 578999999999996544
No 250
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=54.40 E-value=2.8 Score=42.73 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 24 YMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 24 ~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
.+..|.-.+..|+.+.|-+|+|+|||-
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKST 141 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSM 141 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHH
T ss_pred hhccceEEecCCCEEEEECCCCCcHHH
Confidence 455555566778899999999999984
No 251
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=54.19 E-value=5.2 Score=37.71 Aligned_cols=17 Identities=29% Similarity=0.536 Sum_probs=14.0
Q ss_pred hCCcEEEEcCCCcchHH
Q 004910 34 AKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTl 50 (724)
.++.++|-+|+|+|||-
T Consensus 3 ~g~~i~lvGpsGaGKST 19 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST 19 (198)
T ss_dssp --CCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 56789999999999995
No 252
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=54.08 E-value=14 Score=40.80 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccch
Q 004910 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~ 77 (724)
..|++|-+.||+|||.+.-.-+++.+.......+++++.=+..
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4689999999999997755444443332221234777776664
No 253
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=53.72 E-value=20 Score=47.29 Aligned_cols=37 Identities=16% Similarity=0.125 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHH
Q 004910 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS 54 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~ 54 (724)
.+.+..-+..+.+.+..+..+++.+|||+|||.++=+
T Consensus 906 ~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 906 SEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp CHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 5667676777778888888899999999999987543
No 254
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=53.68 E-value=5.2 Score=37.62 Aligned_cols=33 Identities=24% Similarity=0.103 Sum_probs=16.0
Q ss_pred HHHHHHHHH-HHHHHHhCCcEEEEcCCCcchHHH
Q 004910 19 PEQYSYMLE-LKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 19 ~~Q~e~~~~-v~~~l~~~~~~~iEApTGtGKTla 51 (724)
|++..+... |.-.+..++.+++.+|+|+|||-.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 8 SSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp ----------------CCCEEEEECCTTSCHHHH
T ss_pred CCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHH
Confidence 444444432 222345667899999999999974
No 255
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=53.67 E-value=9.7 Score=39.65 Aligned_cols=42 Identities=14% Similarity=0.088 Sum_probs=28.2
Q ss_pred HhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchh
Q 004910 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (724)
Q Consensus 33 ~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~ 78 (724)
..+...+|.+|+|+|||.-.+.-+...+.. +. +|+|.+--++
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~---g~-~vlyid~E~s 102 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDAEHA 102 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEEeCCCC
Confidence 345789999999999998777655444432 34 5666655444
No 256
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=53.66 E-value=6.3 Score=40.67 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=21.6
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccc
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T 76 (724)
+.++|-+|||+|||-..+ ..|+.. . -.||++-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~----~LA~~l---~-~eiIs~Ds 73 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSI----DLAAHF---P-LEVINSDK 73 (339)
T ss_dssp EEEEEECSTTSSHHHHHH----HHHTTS---C-EEEEECCS
T ss_pred ceEEEECCCCCCHHHHHH----HHHHHC---C-CcEEcccc
Confidence 478999999999997533 233332 2 35666644
No 257
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=53.53 E-value=18 Score=39.30 Aligned_cols=50 Identities=12% Similarity=0.069 Sum_probs=39.2
Q ss_pred hCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHhh
Q 004910 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKLL 90 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~l 90 (724)
.+....+.+-||+|||+. ++.+. . .. ++ +++|.|++..+..|+.++|+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~-~-~~--~~-p~lvv~~~~~~A~~l~~~l~~~ 62 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIA-E-RH--AG-PVVLIAPDMQNALRLHDEISQF 62 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHH-H-HS--SS-CEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCeEEEeCCCchHHHHH--HHHHH-H-Hh--CC-CEEEEeCCHHHHHHHHHHHHhh
Confidence 356789999999999985 33332 1 22 35 7999999999999999999986
No 258
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=53.41 E-value=6.4 Score=40.17 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.1
Q ss_pred CCcEEEEcCCCcchHHHHH
Q 004910 35 KGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~L 53 (724)
+..++|-+|||+|||-...
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 3467899999999997533
No 259
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=53.21 E-value=3.3 Score=42.61 Aligned_cols=30 Identities=27% Similarity=0.180 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHH
Q 004910 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~ 52 (724)
|..+.+. +.+ +.. ..++|.+|.|+|||...
T Consensus 18 R~~el~~---L~~-l~~-~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 18 REKEIEK---LKG-LRA-PITLVLGLRRTGKSSII 47 (357)
T ss_dssp CHHHHHH---HHH-TCS-SEEEEEESTTSSHHHHH
T ss_pred hHHHHHH---HHH-hcC-CcEEEECCCCCCHHHHH
Confidence 5555543 444 444 68999999999999753
No 260
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=53.18 E-value=13 Score=38.13 Aligned_cols=24 Identities=21% Similarity=0.083 Sum_probs=18.5
Q ss_pred hCCcEEEEcCCCcchHHHHHHHHH
Q 004910 34 AKGHCLLEMPTGTGKTIALLSLIT 57 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L~~al 57 (724)
.|...+|.+|+|+|||.-.+.-+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~ 129 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSV 129 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHH
Confidence 356789999999999986665443
No 261
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=52.85 E-value=4.8 Score=37.78 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.7
Q ss_pred HhCCcEEEEcCCCcchHH
Q 004910 33 DAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 33 ~~~~~~~iEApTGtGKTl 50 (724)
..+..+++.+|+|+|||-
T Consensus 4 ~~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp CCCCEEEEECSTTSCHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457789999999999986
No 262
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=52.74 E-value=6.4 Score=38.81 Aligned_cols=30 Identities=17% Similarity=0.141 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHh---CCcEEEEcCCCcchHHH
Q 004910 22 YSYMLELKRALDA---KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 22 ~e~~~~v~~~l~~---~~~~~iEApTGtGKTla 51 (724)
...+..+.-.+.. +..++|-+|.|+|||-.
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHH
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHH
Confidence 3467777777777 89999999999999964
No 263
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=52.68 E-value=5.8 Score=37.18 Aligned_cols=15 Identities=33% Similarity=0.601 Sum_probs=13.6
Q ss_pred CcEEEEcCCCcchHH
Q 004910 36 GHCLLEMPTGTGKTI 50 (724)
Q Consensus 36 ~~~~iEApTGtGKTl 50 (724)
+.++|.||+|+|||-
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 578999999999996
No 264
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=52.47 E-value=5.5 Score=35.97 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=13.5
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..+++.+|+|+|||-.
T Consensus 2 ~~I~l~G~~GsGKsT~ 17 (179)
T 3lw7_A 2 KVILITGMPGSGKSEF 17 (179)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3578999999999973
No 265
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=52.36 E-value=9.6 Score=38.88 Aligned_cols=23 Identities=17% Similarity=0.099 Sum_probs=18.0
Q ss_pred CCcEEEEcCCCcchHHHHHHHHH
Q 004910 35 KGHCLLEMPTGTGKTIALLSLIT 57 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~L~~al 57 (724)
+...+|-+|+|+|||.-.+.-+.
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999986665443
No 266
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=51.94 E-value=5.8 Score=36.58 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..+++++|.|+|||-.
T Consensus 3 ~~~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTS 19 (192)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 56789999999999963
No 267
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=51.86 E-value=7.7 Score=44.98 Aligned_cols=35 Identities=23% Similarity=0.100 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHh--CCcEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDA--KGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~--~~~~~iEApTGtGKTla~L 53 (724)
-+|.+.+..+.+.+.. +.++++.+|+|||||...-
T Consensus 189 iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 189 IGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 3456667777877765 3689999999999997543
No 268
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=51.52 E-value=6.2 Score=37.38 Aligned_cols=17 Identities=24% Similarity=0.255 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
++.++|-+|||+|||-.
T Consensus 34 g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSET 50 (205)
T ss_dssp TEEEEEECCCTTTTHHH
T ss_pred CEEEEEECCCCCCHHHH
Confidence 34588999999999864
No 269
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=50.98 E-value=7.3 Score=36.11 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=16.5
Q ss_pred HHhCCcEEEEcCCCcchHHH
Q 004910 32 LDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTla 51 (724)
+..+..+++++|.|+|||-.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHH
T ss_pred CcCCCEEEEECCCCCCHHHH
Confidence 34567899999999999973
No 270
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=50.28 E-value=6.7 Score=37.60 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=15.8
Q ss_pred HHHHHHHhCCcEEEEcCCCcchHH
Q 004910 27 ELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 27 ~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
.|--.+..|+.+.|-+|+|+|||-
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp -------CCCCEEEECSTTSSHHH
T ss_pred CCceecCCCCEEEEECCCCCCHHH
Confidence 444456678899999999999995
No 271
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=49.58 E-value=14 Score=38.20 Aligned_cols=24 Identities=21% Similarity=-0.074 Sum_probs=18.4
Q ss_pred hCCcEEEEcCCCcchHHHHHHHHH
Q 004910 34 AKGHCLLEMPTGTGKTIALLSLIT 57 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L~~al 57 (724)
.|...+|-+|+|+|||.-.+.-+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999986665443
No 272
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=49.48 E-value=14 Score=45.24 Aligned_cols=40 Identities=20% Similarity=0.252 Sum_probs=28.2
Q ss_pred EEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchh
Q 004910 38 CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (724)
Q Consensus 38 ~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~ 78 (724)
-+|-|+.|||||...+.-+.........+. +|++.+|++.
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~-~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGK-PIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSS-CEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCC-cEEEEecCcc
Confidence 478999999999987765443333444345 8999966654
No 273
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=49.32 E-value=11 Score=39.34 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=26.3
Q ss_pred hCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccch
Q 004910 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~ 77 (724)
.+...+|-+|+|+|||.-.+.-+...+.. +. +|+|.+.-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~---g~-~vlyi~~E~ 112 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA---GG-TCAFIDAEH 112 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC---CC-eEEEEECCC
Confidence 45678999999999998766544444432 34 566555443
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=49.25 E-value=6.9 Score=36.03 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
..++++.+|+|+|||-.
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 46789999999999964
No 275
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=49.06 E-value=18 Score=35.11 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=30.0
Q ss_pred hCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccch
Q 004910 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~ 77 (724)
.+...++-+|.|+|||-++|=-+..+.. .+. +|++.++.+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~---~g~-kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQI---AQY-KCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT---TTC-CEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH---CCC-eEEEEeecC
Confidence 3678888999999999988866665542 245 888888664
No 276
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=48.76 E-value=16 Score=37.76 Aligned_cols=42 Identities=14% Similarity=0.087 Sum_probs=27.5
Q ss_pred HHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccch
Q 004910 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~ 77 (724)
+..+...+|.+|+|+|||.-.+.-+...+.. +. +++|.+--.
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~~~~~---g~-~vlyi~~E~ 99 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVANAQAA---GG-IAAFIDAEH 99 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhC---CC-eEEEEECCC
Confidence 3356789999999999998766554444432 34 566555433
No 277
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=48.42 E-value=8.9 Score=45.14 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~--~~~~iEApTGtGKTla~L 53 (724)
-+|.+.+..+.+.+..+ .++++.+|+|||||...-
T Consensus 173 iGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 173 IGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHH
T ss_pred CCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHH
Confidence 46667778888888765 479999999999997543
No 278
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=48.22 E-value=18 Score=37.53 Aligned_cols=42 Identities=12% Similarity=-0.069 Sum_probs=27.5
Q ss_pred hCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhh
Q 004910 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHE 79 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l 79 (724)
.|...+|-+|+|+|||.-.+.-+...+. .+. +|+|.+.-.+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~---~gg-~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK---MGG-VAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH---TTC-CEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh---cCC-eEEEEeccccc
Confidence 4567899999999999866655444432 234 67666554443
No 279
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=48.04 E-value=7.2 Score=35.22 Aligned_cols=15 Identities=27% Similarity=0.180 Sum_probs=13.1
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.++|.+|.|+|||-.
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578999999999963
No 280
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=47.42 E-value=33 Score=36.65 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=22.5
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEE-EEccc
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI-YCTRT 76 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vv-i~T~T 76 (724)
..+++-+|+|+|||-...--|..++ . .++ +|+ +++-|
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~--~-~G~-kVllv~~D~ 138 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQ--K-RGY-KVGVVCSDT 138 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH--T-TTC-CEEEEECCC
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHH--H-CCC-eEEEEeCCC
Confidence 3678899999999986554333332 2 244 554 44443
No 281
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=47.18 E-value=17 Score=39.60 Aligned_cols=34 Identities=29% Similarity=0.271 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHhC-----------CcEEEEcCCCcchHHHH
Q 004910 19 PEQYSYMLELKRALDAK-----------GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~-----------~~~~iEApTGtGKTla~ 52 (724)
..+.+-+..+...+.+. +.+++.+|+|||||...
T Consensus 37 ~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 37 EEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred HHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 44445555555555431 34899999999999843
No 282
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=47.10 E-value=1.4e+02 Score=34.97 Aligned_cols=95 Identities=9% Similarity=0.045 Sum_probs=60.3
Q ss_pred ccchHHhhccCeEEEecCCCCCc-cchhhhhCCCCccccccceeecCCceeeEEeecCCCCcceeecccCCCChHHHHHH
Q 004910 442 LAVKPVFDRFQSVVITSGTLSPI-DLYPRLLNFHPVVSRSFKMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVARNY 520 (724)
Q Consensus 442 ~~l~~l~~~~~s~Il~SaTL~~~-~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~f~~~~~~~~~~~~ 520 (724)
-.++.+|.....+--|+||.... ..|.+..|++-+. +|-..|... .+.+.. =++...+-+..+
T Consensus 369 IT~QnyFr~Y~kLsGMTGTA~tE~~Ef~~iY~l~Vv~---IPTn~p~~R------------~D~~d~-vy~t~~~K~~AI 432 (997)
T 2ipc_A 369 ITYQNFFRLYEKRAGMTGTAKTEEKEFQEIYGMDVVV---VPTNRPVIR------------KDFPDV-VYRTEKGKFYAV 432 (997)
T ss_dssp ECHHHHHTTSSEEEEEESSCGGGHHHHHHHHCCCEEE---CCCSSCCCC------------EEEEEE-EESSHHHHHHHH
T ss_pred eeHHHHHHhChHheecCCCchHHHHHHHHHhCCCEEE---cCCCCCccc------------ccCCCe-EEcCHHHHHHHH
Confidence 34578899999999999999775 3677777876321 111111100 111111 123334445666
Q ss_pred HHHHHHHhcccCCcEEEEecChHHHHHHHHHHh
Q 004910 521 GKLLVEMVSIVPDGIVCFFVSYSYMDEIIATWN 553 (724)
Q Consensus 521 ~~~i~~~~~~~~g~~Lvlf~Sy~~l~~v~~~~~ 553 (724)
++.|.+.. ..+..|||.++|-+.-+.+...++
T Consensus 433 v~eI~~~~-~~GqPVLVgT~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 433 VEEIAEKY-ERGQPVLVGTISIEKSERLSQMLK 464 (997)
T ss_dssp HHHHHHHH-HHTCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHHHH-HCCCCEEEEeCCHHHHHHHHHHHh
Confidence 66666655 356799999999999998888887
No 283
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=46.86 E-value=18 Score=34.67 Aligned_cols=41 Identities=10% Similarity=0.086 Sum_probs=28.8
Q ss_pred HhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccch
Q 004910 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (724)
Q Consensus 33 ~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~ 77 (724)
..|..-++-+|.|+|||..+|--+..+..+ +. ++++.++.+
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~---g~-kvli~kp~~ 66 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYA---KQ-KVVVFKPAI 66 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHT---TC-CEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHc---CC-ceEEEEecc
Confidence 356788999999999998776555444432 35 788888764
No 284
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=46.25 E-value=7.9 Score=36.18 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=15.3
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.+..+++++|.|+|||-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~ 20 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQ 20 (204)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456889999999999963
No 285
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=45.90 E-value=11 Score=38.30 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=14.1
Q ss_pred CcEEEEcCCCcchHHHH
Q 004910 36 GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~ 52 (724)
..++|.+|||+|||-..
T Consensus 11 ~~i~i~GptgsGKt~la 27 (316)
T 3foz_A 11 KAIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCccCHHHHH
Confidence 35788999999999743
No 286
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=45.87 E-value=9 Score=37.37 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=13.8
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..+++.+|.|+|||-.
T Consensus 30 ~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 4689999999999963
No 287
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=45.84 E-value=6.2 Score=36.36 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=15.0
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.+..+++++|.|+|||-.
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455789999999999963
No 288
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=45.81 E-value=21 Score=37.41 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=26.5
Q ss_pred hCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchh
Q 004910 34 AKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~ 78 (724)
.+.|.+|-+|||+|||...-.-+... . ..+. +|++.=+..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~--~~~~-~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-Y--MQGS-RVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-H--TTTC-CEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-H--HCCC-EEEEEeCCcC
Confidence 45799999999999997543322222 2 2245 7888766544
No 289
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=45.28 E-value=7.8 Score=37.19 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=14.8
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
....+++++|+|+|||-.
T Consensus 6 ~~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp -CCEEEEEECTTSSHHHH
T ss_pred cCcEEEEECCCCCCHHHH
Confidence 456799999999999974
No 290
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=45.26 E-value=16 Score=38.43 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=30.6
Q ss_pred EcceeeeCCCCCCCHH-----HHHHHHHHHHHH---HhCCcEEEEcCCCcchHHHH
Q 004910 5 LEDVTVYFPYDNIYPE-----QYSYMLELKRAL---DAKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 5 i~~~~~~Fp~~~~r~~-----Q~e~~~~v~~~l---~~~~~~~iEApTGtGKTla~ 52 (724)
.++++..||-+.++.. -.+.--.+.+.+ ..|+.+.|-+|+|+|||.-.
T Consensus 136 Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 136 FENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp TTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHH
T ss_pred eccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHH
Confidence 4667777777643333 122333444443 45789999999999999644
No 291
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=44.94 E-value=11 Score=34.49 Aligned_cols=18 Identities=33% Similarity=0.314 Sum_probs=15.5
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.+..+++.+|+|+|||..
T Consensus 10 ~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp CCCCEEEECSTTSSHHHH
T ss_pred cCCeEEEEeCCCCCHHHH
Confidence 456899999999999974
No 292
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=44.73 E-value=9.5 Score=35.31 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCcchHH
Q 004910 35 KGHCLLEMPTGTGKTI 50 (724)
Q Consensus 35 ~~~~~iEApTGtGKTl 50 (724)
++.+++-+|+|+|||-
T Consensus 1 ~~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 1 SRPIVISGPSGTGKST 16 (186)
T ss_dssp CCCEEEESSSSSSHHH
T ss_pred CCEEEEECCCCCCHHH
Confidence 3578899999999996
No 293
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=44.60 E-value=8.7 Score=36.92 Aligned_cols=20 Identities=20% Similarity=0.448 Sum_probs=15.8
Q ss_pred HHHhCCcEEEEcCCCcchHH
Q 004910 31 ALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 31 ~l~~~~~~~iEApTGtGKTl 50 (724)
.+..|..++|-+|.|+|||-
T Consensus 12 ~~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp ---CCCEEEEECCTTSCHHH
T ss_pred cCCCCcEEEEECCCCCCHHH
Confidence 45578899999999999996
No 294
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=44.60 E-value=26 Score=35.79 Aligned_cols=42 Identities=17% Similarity=0.233 Sum_probs=29.4
Q ss_pred cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhH
Q 004910 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEM 80 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~ 80 (724)
...|.+|+|+|||.-.|-.+...++... +. +++|.+.-++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~-g~-~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYP-DA-VCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCT-TC-EEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC-Cc-eEEEEeccchhh
Confidence 6788999999999877766555554321 45 787777666553
No 295
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=44.44 E-value=7.3 Score=40.59 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=15.5
Q ss_pred HhCCcEEEEcCCCcchHHH
Q 004910 33 DAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 33 ~~~~~~~iEApTGtGKTla 51 (724)
..++.++|-+|||+|||-.
T Consensus 121 ~~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp CSSEEEEEECSTTSCHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3456899999999999953
No 296
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=44.27 E-value=24 Score=36.35 Aligned_cols=36 Identities=25% Similarity=0.100 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHH----HHHHhCC--cEEEEcCCCcchHHHH
Q 004910 17 IYPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIAL 52 (724)
Q Consensus 17 ~r~~Q~e~~~~v~----~~l~~~~--~~~iEApTGtGKTla~ 52 (724)
+...|.++-+.+. +.+-+|. .++.=+.||+|||..+
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 3567888776633 3333453 4677999999999986
No 297
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=44.17 E-value=13 Score=33.08 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=19.0
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhh
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLS 62 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~ 62 (724)
+..+|-+|+|+|||-. +-|+.|+..
T Consensus 24 g~~~I~G~NGsGKSti--l~Ai~~~l~ 48 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSL--LDAILVGLY 48 (149)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEECCCCCCHHHH--HHHHHHHHc
Confidence 4788999999999974 456666543
No 298
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=43.79 E-value=16 Score=37.85 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHHHHh---CC--cEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYMLELKRALDA---KG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~~---~~--~~~iEApTGtGKTla~L 53 (724)
...|.++-+.|...++. |. .++.=+.||+|||..++
T Consensus 63 ~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp TCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 46788888887664432 43 46779999999999874
No 299
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=43.74 E-value=8.1 Score=36.91 Aligned_cols=16 Identities=13% Similarity=0.177 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCcchHH
Q 004910 35 KGHCLLEMPTGTGKTI 50 (724)
Q Consensus 35 ~~~~~iEApTGtGKTl 50 (724)
...+++++|.|+|||-
T Consensus 5 ~~~I~l~G~~GsGKsT 20 (222)
T 1zak_A 5 PLKVMISGAPASGKGT 20 (222)
T ss_dssp SCCEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4578999999999996
No 300
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=43.27 E-value=46 Score=30.87 Aligned_cols=70 Identities=6% Similarity=0.051 Sum_probs=45.7
Q ss_pred eeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHH
Q 004910 10 VYFPYDNIYPEQYSYMLELKRALDAK-GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKT 83 (724)
Q Consensus 10 ~~Fp~~~~r~~Q~e~~~~v~~~l~~~-~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~ 83 (724)
+.||-.+ -|-+.....++...+... ...+|.++-|++|+-..+...+..+... |+ +|.+.++|..-...+
T Consensus 26 ~~~~~~~-~~~~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~~--Gr-~V~vLAp~~~s~~~l 96 (189)
T 2l8b_A 26 TVHPEKS-VPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAREQ--GR-EVQIIAADRRSQMNM 96 (189)
T ss_dssp CCCGGGC-CCCHHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHHT--TC-CEEEECSTTHHHHHH
T ss_pred ccCCcCc-cccCccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHhc--Ce-EEEEEcCchHHHHHH
Confidence 3455532 233344444555555444 5889999999999988665555555544 67 999999998765543
No 301
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=42.55 E-value=18 Score=36.67 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=21.2
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
+.+++-+|+|+|||-..-.-|-.++. .++ +|++..
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~---~g~-kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVD---EGK-SVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH---TTC-CEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHh---cCC-EEEEEc
Confidence 35788999999999644433333332 244 665544
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=42.26 E-value=9.4 Score=34.72 Aligned_cols=15 Identities=27% Similarity=0.122 Sum_probs=13.1
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.+++.+|+|+|||-.
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 578999999999973
No 303
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=42.14 E-value=9.8 Score=35.42 Aligned_cols=14 Identities=21% Similarity=0.280 Sum_probs=12.6
Q ss_pred cEEEEcCCCcchHH
Q 004910 37 HCLLEMPTGTGKTI 50 (724)
Q Consensus 37 ~~~iEApTGtGKTl 50 (724)
.++|++|.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (205)
T 2jaq_A 2 KIAIFGTVGAGKST 15 (205)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCccCHHH
Confidence 47899999999996
No 304
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=42.12 E-value=11 Score=34.13 Aligned_cols=16 Identities=38% Similarity=0.580 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCcchHH
Q 004910 35 KGHCLLEMPTGTGKTI 50 (724)
Q Consensus 35 ~~~~~iEApTGtGKTl 50 (724)
+..+++-+|.|+|||-
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5689999999999996
No 305
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=41.90 E-value=11 Score=39.68 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.9
Q ss_pred HHhCCcEEEEcCCCcchHH
Q 004910 32 LDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTl 50 (724)
+..++.+++.+|+|+|||.
T Consensus 166 i~~~~~i~l~G~~GsGKST 184 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTT 184 (377)
T ss_dssp CTTCCEEEEECSTTSSHHH
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3456789999999999986
No 306
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=41.82 E-value=8.6 Score=36.07 Aligned_cols=17 Identities=24% Similarity=0.165 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..+++++|.|+|||-.
T Consensus 4 ~~~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQ 20 (213)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CeEEEEEcCCCCCHHHH
Confidence 45789999999999963
No 307
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=41.56 E-value=7.3 Score=36.88 Aligned_cols=14 Identities=36% Similarity=0.501 Sum_probs=12.3
Q ss_pred CCcEEEEeCCCCch
Q 004910 227 KESVVVFDEAHNID 240 (724)
Q Consensus 227 ~~~~lIiDEAHnL~ 240 (724)
...+|||||||++.
T Consensus 87 ~~~vliIDEAq~l~ 100 (199)
T 2r2a_A 87 IGSIVIVDEAQDVW 100 (199)
T ss_dssp TTCEEEETTGGGTS
T ss_pred CceEEEEEChhhhc
Confidence 48899999999994
No 308
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=41.37 E-value=20 Score=37.28 Aligned_cols=37 Identities=19% Similarity=-0.024 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHH----HHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v~----~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
+...|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 3567888776653 2333453 56779999999999863
No 309
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=41.29 E-value=6.3 Score=36.48 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=16.1
Q ss_pred HHhCCcEEEEcCCCcchHH
Q 004910 32 LDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTl 50 (724)
+..|..+++-+|.|+|||-
T Consensus 6 i~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CCTTEEEEEEECTTSCHHH
T ss_pred CCCCeEEEEECCCCCCHHH
Confidence 3467789999999999996
No 310
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=41.23 E-value=11 Score=34.32 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..+++.+|.|+|||-.
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45789999999999974
No 311
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=41.11 E-value=6.3 Score=36.08 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=15.6
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.|..+.+-+|+|+|||--
T Consensus 8 ~gei~~l~G~nGsGKSTl 25 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTF 25 (171)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 567899999999999974
No 312
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=41.08 E-value=9.3 Score=35.17 Aligned_cols=14 Identities=21% Similarity=0.278 Sum_probs=12.6
Q ss_pred cEEEEcCCCcchHH
Q 004910 37 HCLLEMPTGTGKTI 50 (724)
Q Consensus 37 ~~~iEApTGtGKTl 50 (724)
.+++++|.|+|||-
T Consensus 3 ~I~i~G~~GsGKsT 16 (194)
T 1nks_A 3 IGIVTGIPGVGKST 16 (194)
T ss_dssp EEEEEECTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57899999999995
No 313
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=41.07 E-value=11 Score=35.64 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=16.2
Q ss_pred HHHhCCcEEEEcCCCcchHHH
Q 004910 31 ALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 31 ~l~~~~~~~iEApTGtGKTla 51 (724)
.+..|+.+.|-+|+|+|||-.
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTL 36 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTV 36 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHH
Confidence 456788999999999999963
No 314
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=40.83 E-value=19 Score=38.16 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHHHHHH---hCC--cEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYMLELKRALD---AKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~---~~~--~~~iEApTGtGKTla~L 53 (724)
-..|.++-+.|...++ +|. .++.=+.||+|||..++
T Consensus 119 ~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 119 QDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 5667777666554332 343 46779999999999875
No 315
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=40.78 E-value=8.6 Score=35.49 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..+++++|.|+|||-.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999973
No 316
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=40.65 E-value=18 Score=37.51 Aligned_cols=37 Identities=19% Similarity=0.190 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHHHHHh---CC--cEEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLELKRALDA---KG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v~~~l~~---~~--~~~iEApTGtGKTla~L 53 (724)
+-..|.++-+.|...++. |. .++.=+.||+|||..+.
T Consensus 63 ~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 63 PSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp TTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 356788888877665543 43 46779999999999874
No 317
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=40.51 E-value=7.6 Score=40.76 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=16.0
Q ss_pred HHhCCcEEEEcCCCcchHH
Q 004910 32 LDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTl 50 (724)
+..++.++|-+|||+|||-
T Consensus 133 ~~~g~~i~ivG~~GsGKTT 151 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKST 151 (372)
T ss_dssp TSSSEEEEEECSSSSSHHH
T ss_pred hcCCCEEEEECCCCCCHHH
Confidence 3456789999999999995
No 318
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=40.31 E-value=9.7 Score=36.60 Aligned_cols=19 Identities=32% Similarity=0.424 Sum_probs=11.8
Q ss_pred HhCCcEEEEcCCCcchHHH
Q 004910 33 DAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 33 ~~~~~~~iEApTGtGKTla 51 (724)
..|..+.|-+|+|+|||-.
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl 43 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTV 43 (231)
T ss_dssp ECCCEEEEECSCC----CH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4567889999999999953
No 319
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=40.21 E-value=11 Score=37.07 Aligned_cols=34 Identities=15% Similarity=-0.013 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHHHHH-hCCcEEEEcCCCcchHHH
Q 004910 18 YPEQYSYMLELKRALD-AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~-~~~~~~iEApTGtGKTla 51 (724)
+|.+............ .+..+++|++.|+|||-.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~I~ieG~~GsGKST~ 40 (263)
T 1p5z_B 6 TPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTF 40 (263)
T ss_dssp -----------------CCEEEEEECSTTSSHHHH
T ss_pred cchhccCCCCcccccccCceEEEEECCCCCCHHHH
Confidence 3444444444443332 335789999999999973
No 320
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=40.04 E-value=11 Score=35.51 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.+..+++++|.|+|||-.
T Consensus 9 ~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp CSCEEEEEESTTSSHHHH
T ss_pred cCCEEEEEcCCCCCHHHH
Confidence 356899999999999963
No 321
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=39.92 E-value=20 Score=37.57 Aligned_cols=37 Identities=19% Similarity=0.084 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHHHh---CC--cEEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLELKRALDA---KG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v~~~l~~---~~--~~~iEApTGtGKTla~L 53 (724)
+...|.++.+.|...++. |. .++.=+.||+|||..+.
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 356798888887654432 43 57779999999999864
No 322
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=39.92 E-value=13 Score=37.11 Aligned_cols=15 Identities=47% Similarity=0.685 Sum_probs=13.3
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.+++.+|+|+|||..
T Consensus 46 GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLL 60 (274)
T ss_dssp EEEEESSTTSCHHHH
T ss_pred eEEEECCCCCcHHHH
Confidence 489999999999974
No 323
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=39.82 E-value=11 Score=35.77 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCcchHH
Q 004910 35 KGHCLLEMPTGTGKTI 50 (724)
Q Consensus 35 ~~~~~iEApTGtGKTl 50 (724)
+..+++++|.|+|||-
T Consensus 4 ~~~I~l~G~~GsGKsT 19 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGT 19 (220)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4578999999999996
No 324
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=39.81 E-value=23 Score=36.29 Aligned_cols=37 Identities=14% Similarity=-0.029 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHH----HHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v~----~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
+...|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 54 ~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 3567888776643 3333454 46779999999999864
No 325
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=39.59 E-value=10 Score=35.00 Aligned_cols=17 Identities=18% Similarity=0.083 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..+++++|+|+|||-.
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 35689999999999964
No 326
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=39.46 E-value=9.7 Score=35.86 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=15.4
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.+..+++++|.|+|||-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999963
No 327
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=39.27 E-value=19 Score=33.74 Aligned_cols=28 Identities=18% Similarity=0.016 Sum_probs=19.8
Q ss_pred HHHHHHHHHHh-----CCcEEEEcCCCcchHHH
Q 004910 24 YMLELKRALDA-----KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 24 ~~~~v~~~l~~-----~~~~~iEApTGtGKTla 51 (724)
.+.++.+.+.+ +..+.|.+|+|+|||-.
T Consensus 6 ~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHH
T ss_pred HHHHHHHHHHHhccCCCeEEEEECCCCCCHHHH
Confidence 44556665543 34688999999999963
No 328
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=39.20 E-value=23 Score=39.19 Aligned_cols=19 Identities=32% Similarity=0.228 Sum_probs=15.8
Q ss_pred CCcEEEEcCCCcchHHHHH
Q 004910 35 KGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~L 53 (724)
+.++++.+|+|||||...-
T Consensus 108 g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp SCEEEEESSSSSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999997543
No 329
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=39.18 E-value=12 Score=35.35 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=15.6
Q ss_pred HHhCCcEEEEcCCCcchHH
Q 004910 32 LDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTl 50 (724)
+..+..++++++.|+|||-
T Consensus 22 ~~~~~~i~~~G~~GsGKsT 40 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKST 40 (211)
T ss_dssp TSSCEEEEEECSTTSSHHH
T ss_pred CCCCCEEEEECCCCCCHHH
Confidence 3456688999999999985
No 330
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=39.16 E-value=11 Score=37.06 Aligned_cols=15 Identities=40% Similarity=0.330 Sum_probs=12.9
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.++|-+|||+|||-.
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 578899999999963
No 331
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=39.15 E-value=11 Score=36.12 Aligned_cols=18 Identities=33% Similarity=0.220 Sum_probs=15.5
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.|..+++|+|.|+|||-.
T Consensus 4 ~g~~i~~eG~~g~GKst~ 21 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQ 21 (216)
T ss_dssp CCCEEEEEECSSSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467899999999999953
No 332
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=39.15 E-value=18 Score=32.97 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=18.7
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHh
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVL 61 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~ 61 (724)
+..+|-+|+|+|||- |+-||.++.
T Consensus 27 g~~~i~G~NGsGKSt--ll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSN--IGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHH--HHHHHHHHT
T ss_pred CcEEEECCCCCCHHH--HHHHHHHHH
Confidence 478999999999997 445676654
No 333
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=39.09 E-value=12 Score=35.04 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.4
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.+..++|.+|.|+|||-.
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467899999999999963
No 334
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=38.98 E-value=5.6 Score=37.72 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=19.6
Q ss_pred HHHHHHHHHHH----hCCcEEEEcCCCcchHH
Q 004910 23 SYMLELKRALD----AKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 23 e~~~~v~~~l~----~~~~~~iEApTGtGKTl 50 (724)
+++.++.+.+. .+..+.|-+|+|+|||-
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKST 37 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHH
Confidence 45555555543 34578899999999984
No 335
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=38.95 E-value=8.9 Score=37.11 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=12.5
Q ss_pred HhCCcEEEEcCCCcchHH
Q 004910 33 DAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 33 ~~~~~~~iEApTGtGKTl 50 (724)
..|..+++|+|.|+|||-
T Consensus 23 ~~g~~I~~eG~~GsGKsT 40 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTT 40 (227)
T ss_dssp CCCCEEEEECCC---CHH
T ss_pred cCCeEEEEECCCCCCHHH
Confidence 356789999999999985
No 336
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=38.43 E-value=12 Score=34.61 Aligned_cols=15 Identities=27% Similarity=0.348 Sum_probs=12.7
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.+++++|.|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999853
No 337
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=38.20 E-value=11 Score=36.39 Aligned_cols=16 Identities=38% Similarity=0.399 Sum_probs=13.9
Q ss_pred CCcEEEEcCCCcchHH
Q 004910 35 KGHCLLEMPTGTGKTI 50 (724)
Q Consensus 35 ~~~~~iEApTGtGKTl 50 (724)
|..+.|++|.|+|||-
T Consensus 20 g~~i~i~G~~GsGKST 35 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTT 35 (230)
T ss_dssp CEEEEEECSTTSCHHH
T ss_pred ceEEEEECCCCCCHHH
Confidence 4568999999999996
No 338
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=38.15 E-value=12 Score=35.83 Aligned_cols=18 Identities=33% Similarity=0.348 Sum_probs=15.3
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.|..+++|+|.|+|||-.
T Consensus 2 ~g~~i~~eG~~gsGKsT~ 19 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTA 19 (213)
T ss_dssp CCCEEEEEECTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 367899999999999953
No 339
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=38.13 E-value=21 Score=37.54 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=15.7
Q ss_pred hCCcEEEEcCCCcchHHHH
Q 004910 34 AKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~ 52 (724)
.+..+++.+++|||||..+
T Consensus 159 ~~~~vli~Ge~GtGK~~lA 177 (387)
T 1ny5_A 159 AECPVLITGESGVGKEVVA 177 (387)
T ss_dssp CCSCEEEECSTTSSHHHHH
T ss_pred CCCCeEEecCCCcCHHHHH
Confidence 3467999999999999743
No 340
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=38.04 E-value=14 Score=38.98 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.3
Q ss_pred CcEEEEcCCCcchHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L 53 (724)
..++|-+|||+|||-...
T Consensus 3 ~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEEECSSSSHHHHHH
T ss_pred cEEEEECcchhhHHHHHH
Confidence 357899999999996433
No 341
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=38.03 E-value=15 Score=38.30 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=20.1
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhh
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLS 62 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~ 62 (724)
+..+|-+|||+|||. |+=|+.|+..
T Consensus 26 gl~vi~G~NGaGKT~--ileAI~~~l~ 50 (371)
T 3auy_A 26 GIVAIIGENGSGKSS--IFEAVFFALF 50 (371)
T ss_dssp EEEEEEECTTSSHHH--HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHH--HHHHHHHHHc
Confidence 578999999999998 4567777554
No 342
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=37.95 E-value=29 Score=33.27 Aligned_cols=23 Identities=35% Similarity=0.302 Sum_probs=18.9
Q ss_pred HHHhCCcEEEEcCCCcchHHHHH
Q 004910 31 ALDAKGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 31 ~l~~~~~~~iEApTGtGKTla~L 53 (724)
.+..|..+.|-+|+|+|||.-..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 45677899999999999996544
No 343
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=37.93 E-value=11 Score=36.48 Aligned_cols=18 Identities=33% Similarity=0.499 Sum_probs=15.1
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.+..+++|+|.|+|||-.
T Consensus 25 ~g~~i~i~G~~GsGKsT~ 42 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTV 42 (229)
T ss_dssp CCEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCCCHHHH
Confidence 456899999999999863
No 344
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=37.54 E-value=13 Score=33.62 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.8
Q ss_pred HhCCcEEEEcCCCcchHH
Q 004910 33 DAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 33 ~~~~~~~iEApTGtGKTl 50 (724)
..|..+.+.+|.|+|||-
T Consensus 31 ~~Ge~v~L~G~nGaGKTT 48 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTT 48 (158)
T ss_dssp SSCEEEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 566789999999999995
No 345
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=36.94 E-value=37 Score=34.32 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=22.0
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEcc
Q 004910 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~ 75 (724)
+..+.+-+|+|+|||-..-+ ++.... +.++ +|.+...
T Consensus 102 g~vi~lvG~nGsGKTTll~~--Lagll~-~~~g-~V~l~g~ 138 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAK--LGRYYQ-NLGK-KVMFCAG 138 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHH--HHHHHH-TTTC-CEEEECC
T ss_pred CeEEEEECCCCCcHHHHHHH--HHHHHH-hcCC-EEEEEee
Confidence 45788889999999953322 222222 2345 6766543
No 346
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=36.55 E-value=60 Score=30.71 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.|..+++|+|.|+|||-.
T Consensus 5 ~g~~i~~eG~~gsGKsT~ 22 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTN 22 (213)
T ss_dssp CCEEEEEECSTTSSHHHH
T ss_pred CceEEEEEcCCCCCHHHH
Confidence 466889999999999853
No 347
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=36.53 E-value=13 Score=38.43 Aligned_cols=17 Identities=29% Similarity=0.186 Sum_probs=14.3
Q ss_pred CcEEEEcCCCcchHHHH
Q 004910 36 GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~ 52 (724)
..++|.+|||+|||-..
T Consensus 8 ~lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCcCcHHHHH
Confidence 46889999999999743
No 348
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=36.46 E-value=14 Score=34.46 Aligned_cols=16 Identities=38% Similarity=0.451 Sum_probs=13.8
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..+++++|.|+|||-.
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3688999999999974
No 349
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=36.31 E-value=31 Score=36.81 Aligned_cols=36 Identities=22% Similarity=0.110 Sum_probs=22.1
Q ss_pred cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEE-EEccc
Q 004910 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLI-YCTRT 76 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vv-i~T~T 76 (724)
.+++-+|+|+|||-....-|..++. .++ +|+ +++.|
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~---~G~-kVllv~~D~ 135 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKK---RGY-KVGLVAADV 135 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH---TTC-CEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---cCC-eEEEEecCc
Confidence 5788899999999755443333332 244 564 45444
No 350
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=36.24 E-value=12 Score=34.18 Aligned_cols=17 Identities=29% Similarity=0.272 Sum_probs=14.4
Q ss_pred hCCcEEEEcCCCcchHH
Q 004910 34 AKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTl 50 (724)
.+..++++++.|+|||-
T Consensus 4 ~g~~i~l~G~~GsGKST 20 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTT 20 (179)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 35678899999999985
No 351
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=35.87 E-value=18 Score=33.34 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..+++.+|+|+|||-.
T Consensus 10 ~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 10 GINILITGTPGTGKTSM 26 (184)
T ss_dssp SCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56799999999999974
No 352
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=35.85 E-value=30 Score=35.21 Aligned_cols=34 Identities=26% Similarity=0.299 Sum_probs=20.8
Q ss_pred cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
.+.+-+|+|+|||-....-|..++. .++ +|++..
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~---~g~-kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAE---LGY-KVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH---TTC-CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---CCC-eEEEEe
Confidence 5777899999999654433333332 245 665543
No 353
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=35.80 E-value=15 Score=33.05 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.8
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..+++.++.|+|||-.
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4689999999999964
No 354
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=35.78 E-value=19 Score=36.80 Aligned_cols=17 Identities=35% Similarity=0.282 Sum_probs=14.2
Q ss_pred CcEEEEcCCCcchHHHH
Q 004910 36 GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~ 52 (724)
..++|.+|||+|||-..
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36889999999999743
No 355
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=35.76 E-value=12 Score=43.56 Aligned_cols=17 Identities=47% Similarity=0.565 Sum_probs=14.8
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..+++.+|+|||||..
T Consensus 238 ~~~vLL~Gp~GtGKTtL 254 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLI 254 (806)
T ss_dssp CCEEEECSCTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 46799999999999974
No 356
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=35.69 E-value=15 Score=34.31 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=14.1
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..++|.+|.|+|||-.
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4799999999999964
No 357
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=35.67 E-value=13 Score=33.71 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..+++.+|.|+|||-.
T Consensus 8 g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp SEEEEEECSTTSCHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45789999999999963
No 358
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=35.51 E-value=15 Score=35.44 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=14.0
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..+++++|+|+|||-.
T Consensus 17 ~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5789999999999963
No 359
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=35.45 E-value=13 Score=34.30 Aligned_cols=17 Identities=29% Similarity=0.176 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..++++++.|+|||-.
T Consensus 13 ~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CcEEEEEcCCCCCHHHH
Confidence 45789999999999963
No 360
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=35.37 E-value=8.6 Score=36.23 Aligned_cols=14 Identities=29% Similarity=0.313 Sum_probs=12.4
Q ss_pred cEEEEcCCCcchHH
Q 004910 37 HCLLEMPTGTGKTI 50 (724)
Q Consensus 37 ~~~iEApTGtGKTl 50 (724)
.++|++|.|+|||-
T Consensus 2 ~I~i~G~~GsGKsT 15 (214)
T 1gtv_A 2 LIAIEGVDGAGKRT 15 (214)
T ss_dssp EEEEEEEEEEEHHH
T ss_pred EEEEEcCCCCCHHH
Confidence 57899999999995
No 361
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=35.21 E-value=22 Score=33.50 Aligned_cols=26 Identities=23% Similarity=0.060 Sum_probs=20.3
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhC
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSK 63 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~ 63 (724)
+..+|-+|+|+|||-. +-|+.|+...
T Consensus 24 ~~~~I~G~NgsGKSti--l~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSL--LDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHH--HHHHHHHhcC
Confidence 5788999999999973 5567777653
No 362
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=34.79 E-value=31 Score=35.15 Aligned_cols=30 Identities=10% Similarity=0.005 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCC------cEEEEcCCCcchHHH
Q 004910 22 YSYMLELKRALDAKG------HCLLEMPTGTGKTIA 51 (724)
Q Consensus 22 ~e~~~~v~~~l~~~~------~~~iEApTGtGKTla 51 (724)
.+....+...+-++. .+.|-+|+|+|||-.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl 108 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTT 108 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHH
Confidence 344455555555543 578899999999963
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=34.68 E-value=15 Score=33.69 Aligned_cols=15 Identities=33% Similarity=0.333 Sum_probs=12.8
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.++++++.|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999963
No 364
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=34.65 E-value=15 Score=34.37 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=13.7
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..+++++|.|+|||-.
T Consensus 16 ~~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999964
No 365
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=34.56 E-value=15 Score=35.83 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.3
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.+..+++|+|.|+|||-.
T Consensus 26 ~~~~i~~eG~~GsGKsT~ 43 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTA 43 (236)
T ss_dssp CCCEEEEEESTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 467899999999999953
No 366
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=34.55 E-value=16 Score=32.96 Aligned_cols=16 Identities=31% Similarity=0.316 Sum_probs=14.2
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
++++|.++.|+|||-.
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5789999999999964
No 367
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=34.55 E-value=15 Score=34.77 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=12.8
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.++|.+|.|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999963
No 368
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=34.45 E-value=17 Score=37.40 Aligned_cols=37 Identities=19% Similarity=0.036 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHH---HHhCC--cEEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLELKRA---LDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v~~~---l~~~~--~~~iEApTGtGKTla~L 53 (724)
+...|.++-+.|... +-+|. .++.=+.||+|||..+.
T Consensus 58 ~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 58 PQASQQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp TTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCCcHhHHHHHHHHHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 356788776654332 23443 46779999999999864
No 369
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=34.16 E-value=15 Score=34.73 Aligned_cols=15 Identities=27% Similarity=0.288 Sum_probs=12.8
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.++|.+|.|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478899999999974
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=33.79 E-value=14 Score=33.83 Aligned_cols=16 Identities=19% Similarity=0.218 Sum_probs=13.7
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..+++++|+|+|||-.
T Consensus 7 ~~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEEESTTSSHHHH
T ss_pred cEEEEECCCCCCHHHH
Confidence 3688999999999974
No 371
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=33.64 E-value=15 Score=35.07 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=12.5
Q ss_pred cEEEEcCCCcchHH
Q 004910 37 HCLLEMPTGTGKTI 50 (724)
Q Consensus 37 ~~~iEApTGtGKTl 50 (724)
.+++++|.|+|||-
T Consensus 2 ~I~l~G~~GsGKsT 15 (223)
T 2xb4_A 2 NILIFGPNGSGKGT 15 (223)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47899999999996
No 372
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=33.11 E-value=17 Score=34.56 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=13.8
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..+++++|.|+|||-.
T Consensus 6 ~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CEEEEEECTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4689999999999963
No 373
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=33.04 E-value=26 Score=36.49 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHH----HHHhCC--cEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~~----~l~~~~--~~~iEApTGtGKTla~L 53 (724)
..|.++-+.+.. .+-+|. .++.-+.||+|||..+.
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 568888766543 333453 56779999999998764
No 374
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=32.95 E-value=14 Score=36.28 Aligned_cols=17 Identities=24% Similarity=0.147 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
...+++++++|+|||-.
T Consensus 4 ~~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTF 20 (260)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred CEEEEEEcCCCCCHHHH
Confidence 34789999999999963
No 375
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=32.57 E-value=26 Score=36.37 Aligned_cols=34 Identities=18% Similarity=0.053 Sum_probs=23.5
Q ss_pred HHHHHHHHHH----HHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 20 EQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 20 ~Q~e~~~~v~----~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
.|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 5877766553 3333453 57779999999999864
No 376
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=32.47 E-value=15 Score=34.67 Aligned_cols=15 Identities=20% Similarity=0.127 Sum_probs=12.8
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.+++++|.|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999963
No 377
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=32.27 E-value=15 Score=34.71 Aligned_cols=16 Identities=38% Similarity=0.574 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCcchHH
Q 004910 35 KGHCLLEMPTGTGKTI 50 (724)
Q Consensus 35 ~~~~~iEApTGtGKTl 50 (724)
++.+++|++-|+|||-
T Consensus 2 ~kFI~~EG~dGsGKsT 17 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTT 17 (205)
T ss_dssp CEEEEEECCTTSCHHH
T ss_pred CCEEEEECCCCCcHHH
Confidence 4578999999999995
No 378
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=32.16 E-value=34 Score=34.54 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=21.3
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEcc
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~ 75 (724)
..+.+-+|+|+|||-..-. ++.... +.++ +|.+...
T Consensus 101 ~vi~lvG~nGsGKTTll~~--Lag~l~-~~~g-~V~l~g~ 136 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGK--LAHRLK-NEGT-KVLMAAG 136 (302)
T ss_dssp EEEEEECCTTSCHHHHHHH--HHHHHH-HTTC-CEEEECC
T ss_pred cEEEEEcCCCCCHHHHHHH--HHHHHH-HcCC-eEEEEee
Confidence 4678899999999963322 222111 2245 6777653
No 379
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=31.93 E-value=20 Score=33.48 Aligned_cols=17 Identities=18% Similarity=0.177 Sum_probs=14.7
Q ss_pred hCCcEEEEcCCCcchHH
Q 004910 34 AKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTl 50 (724)
.+..+++-+|.|+|||-
T Consensus 24 ~g~~i~l~G~sGsGKST 40 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKST 40 (200)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45688999999999995
No 380
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=31.90 E-value=17 Score=32.50 Aligned_cols=15 Identities=20% Similarity=0.073 Sum_probs=12.9
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.++++++.|+|||-.
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 478999999999963
No 381
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=31.79 E-value=32 Score=35.66 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~~v~----~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
...|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 70 ~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 70 YAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred cccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 456887765543 3333454 46778999999999864
No 382
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=31.41 E-value=25 Score=36.58 Aligned_cols=37 Identities=19% Similarity=0.060 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHHH----HHHhCC--cEEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v~~----~l~~~~--~~~iEApTGtGKTla~L 53 (724)
+...|.++-+.+.. .+-+|. .++.=+.||+|||..+.
T Consensus 65 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 65 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred ccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 35678887776543 333453 56779999999999764
No 383
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=31.33 E-value=27 Score=35.71 Aligned_cols=20 Identities=25% Similarity=0.292 Sum_probs=15.8
Q ss_pred hCCcEEEEcCCCcchHHHHH
Q 004910 34 AKGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L 53 (724)
.+...++.+|+|+|||.-.+
T Consensus 122 ~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 34567999999999997554
No 384
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=31.31 E-value=71 Score=42.93 Aligned_cols=37 Identities=24% Similarity=0.322 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHHHHH
Q 004910 18 YPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIALLS 54 (724)
Q Consensus 18 r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla~L~ 54 (724)
.|.|.+-+-.+++.+....-+++-+|||+|||-++=+
T Consensus 889 ~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 889 KQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 4556665566666666555688999999999988654
No 385
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=31.27 E-value=14 Score=33.78 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=10.5
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..++++++.|+|||-.
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999964
No 386
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=31.25 E-value=30 Score=44.20 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=28.4
Q ss_pred HhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchh
Q 004910 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (724)
Q Consensus 33 ~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~ 78 (724)
..+..+++-+|+|||||.-.+.-+...+ . .+. +++|.+..++
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~-~--~G~-~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQ-R--EGK-TCAFIDAEHA 1466 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHH-T--TTC-CEEEECTTSC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-H--cCC-cEEEEEcccc
Confidence 3567899999999999986654433322 2 245 6777765554
No 387
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=31.21 E-value=15 Score=34.78 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=18.4
Q ss_pred HHHhCCcEEEEcCCCcchHHHHHH
Q 004910 31 ALDAKGHCLLEMPTGTGKTIALLS 54 (724)
Q Consensus 31 ~l~~~~~~~iEApTGtGKTla~L~ 54 (724)
.+..|....|-+|+|+|||.-..+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHH
Confidence 344567899999999999975443
No 388
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=31.17 E-value=50 Score=33.65 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=24.1
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
..+++-+..|+|||.....-|...+. .++ ||++..
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~---~G~-rVllvD 54 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSK---VRS-SVLLIS 54 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHT---SSS-CEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH---CCC-eEEEEE
Confidence 46788999999999876655555553 245 666554
No 389
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=31.16 E-value=32 Score=35.94 Aligned_cols=36 Identities=19% Similarity=0.091 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~~v~~----~l~~~~--~~~iEApTGtGKTla~L 53 (724)
-..|.++-+.+.. .+-+|. .++.=+.||+|||..+.
T Consensus 78 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 78 ESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 4568877665432 333453 56779999999999864
No 390
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=30.91 E-value=29 Score=36.22 Aligned_cols=36 Identities=22% Similarity=0.111 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~~v~----~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
...|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 79 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp TCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 567888776643 3333453 56779999999999864
No 391
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=30.70 E-value=15 Score=33.79 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=13.1
Q ss_pred CcEEEEcCCCcchHH
Q 004910 36 GHCLLEMPTGTGKTI 50 (724)
Q Consensus 36 ~~~~iEApTGtGKTl 50 (724)
..+++-+|.|+|||-
T Consensus 3 ~ii~l~G~~GaGKST 17 (189)
T 2bdt_A 3 KLYIITGPAGVGKST 17 (189)
T ss_dssp EEEEEECSTTSSHHH
T ss_pred eEEEEECCCCCcHHH
Confidence 467889999999996
No 392
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=30.69 E-value=14 Score=35.84 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=28.3
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.++++...|+-.. ++ ....|-=.+..|+...|-+|.|+|||-
T Consensus 4 l~~~~l~~~y~~~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 4 ITVRNATFTWARSD-PP----TLNGITFSIPEGALVAVVGQVGCGKSS 46 (237)
T ss_dssp EEEEEEEEESCTTS-CC----SEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred EEEEEEEEEeCCCC-Cc----eeeeeEEEECCCCEEEEECCCCCCHHH
Confidence 67888888886311 11 122222234567899999999999986
No 393
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=30.55 E-value=41 Score=34.41 Aligned_cols=17 Identities=24% Similarity=0.174 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..+.+-+|+|+|||-.
T Consensus 129 g~vi~lvG~nGaGKTTl 145 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTT 145 (328)
T ss_dssp SEEEEEECCTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45788999999999963
No 394
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=30.41 E-value=1e+02 Score=30.78 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHh------CCcEEEEcC-CCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 22 YSYMLELKRALDA------KGHCLLEMP-TGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 22 ~e~~~~v~~~l~~------~~~~~iEAp-TGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
.|.+..+...+.- .+.++|-++ .|+|||.....-|..++.. ++ ||++.-
T Consensus 85 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~---G~-rVLLID 140 (299)
T 3cio_A 85 VEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQS---DQ-KVLFID 140 (299)
T ss_dssp HHHHHHHHHHHHHHTSSCSCCEEEEEESSSSSCHHHHHHHHHHHHHHT---TC-CEEEEE
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEECCCCCCChHHHHHHHHHHHHhC---CC-cEEEEE
Confidence 4555555544431 244555554 7999998777666666642 45 676653
No 395
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=30.24 E-value=16 Score=35.35 Aligned_cols=16 Identities=19% Similarity=0.169 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCcchHH
Q 004910 35 KGHCLLEMPTGTGKTI 50 (724)
Q Consensus 35 ~~~~~iEApTGtGKTl 50 (724)
+..+++|++.|+|||-
T Consensus 2 ~~~i~~~G~~g~GKtt 17 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKST 17 (241)
T ss_dssp CEEEEEEECTTSSHHH
T ss_pred CeEEEEEcCCCCCHHH
Confidence 3468899999999996
No 396
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=30.19 E-value=15 Score=35.69 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=26.2
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.++++.+.|+-.. ........|--.+..|+.+.|-+|.|+|||-
T Consensus 2 l~~~~l~~~y~~~~---~~~~~L~~isl~i~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 2 VKLKNVTKTYKMGE---EIIYALKNVNLNIKEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp EEEEEEEEEEEETT---EEEEEEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred EEEEEEEEEeCCCC---cceeeEEeeeEEEcCCCEEEEECCCCCcHHH
Confidence 45667776665321 0001111222234567899999999999995
No 397
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=30.02 E-value=47 Score=30.29 Aligned_cols=39 Identities=10% Similarity=-0.046 Sum_probs=22.4
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchh
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~ 78 (724)
..+.+-++.|+|||-... ..+.+.... +. +|.+....+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~-~L~~~l~~~--g~-~v~~ik~~~~ 43 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLME-KWVAAAVRE--GW-RVGTVKHHGH 43 (169)
T ss_dssp CEEEEECCTTSSHHHHHH-HHHHHHHHT--TC-CEEEEECCC-
T ss_pred EEEEEECCCCCCHHHHHH-HHHHhhHhc--CC-eeeEEEeCCC
Confidence 357788999999996322 122222222 33 6766665543
No 398
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=29.81 E-value=46 Score=34.57 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 23 e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
++...+...-.....+++.+++||||++.
T Consensus 140 ~~~~~~~~~a~~~~~vli~GesGtGKe~l 168 (368)
T 3dzd_A 140 EIKRLIPKIAKSKAPVLITGESGTGKEIV 168 (368)
T ss_dssp HHHHHHHHHHTSCSCEEEECCTTSSHHHH
T ss_pred HHHhhhhhhhccchhheEEeCCCchHHHH
Confidence 33333333334456788999999999864
No 399
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=29.79 E-value=33 Score=35.35 Aligned_cols=36 Identities=19% Similarity=0.024 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHH----HHHHHhCC--cEEEEcCCCcchHHHH
Q 004910 17 IYPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIAL 52 (724)
Q Consensus 17 ~r~~Q~e~~~~v----~~~l~~~~--~~~iEApTGtGKTla~ 52 (724)
+...|.++-+.+ .+.+-+|. .++.-+.||+|||..+
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 356788777663 33333454 4677999999999986
No 400
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=29.50 E-value=21 Score=34.55 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCcchHH
Q 004910 35 KGHCLLEMPTGTGKTI 50 (724)
Q Consensus 35 ~~~~~iEApTGtGKTl 50 (724)
...++|.+|.|+|||-
T Consensus 27 ~~~i~l~G~~GsGKST 42 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT 42 (246)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 3689999999999996
No 401
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=29.46 E-value=52 Score=36.00 Aligned_cols=50 Identities=18% Similarity=0.192 Sum_probs=29.3
Q ss_pred HHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHH
Q 004910 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAE 86 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~e 86 (724)
+..|...+|-+|+|+|||.-...-+-... +.+. +++|.+...+ ..|+...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~~G~-~vi~~~~ee~-~~~l~~~ 327 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENAC---ANKE-RAILFAYEES-RAQLLRN 327 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHH---TTTC-CEEEEESSSC-HHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHH---hCCC-CEEEEEEeCC-HHHHHHH
Confidence 45567899999999999975443222222 2355 6666554333 2354443
No 402
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=29.45 E-value=17 Score=34.14 Aligned_cols=17 Identities=24% Similarity=0.006 Sum_probs=14.2
Q ss_pred hCCcEEEEcCCCcchHH
Q 004910 34 AKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTl 50 (724)
.+..+.|-+|+|+|||-
T Consensus 5 ~~~~i~i~G~~GsGKST 21 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTT 21 (211)
T ss_dssp CCEEEEEEESTTSSHHH
T ss_pred CcEEEEEECCCCCCHHH
Confidence 44578899999999995
No 403
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=29.40 E-value=1.2e+02 Score=29.80 Aligned_cols=49 Identities=12% Similarity=0.156 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHh------CCcEEEEcC-CCcchHHHHHHHHHHHHhhCCCCCceEEEE
Q 004910 21 QYSYMLELKRALDA------KGHCLLEMP-TGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (724)
Q Consensus 21 Q~e~~~~v~~~l~~------~~~~~iEAp-TGtGKTla~L~~al~~~~~~~~~~~~vvi~ 73 (724)
-.|....+...+.- .+.++|-++ .|+|||.....-|..++.. ++ ||++.
T Consensus 62 ~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~---G~-rVLLI 117 (271)
T 3bfv_A 62 ISEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQA---GY-KTLIV 117 (271)
T ss_dssp HHHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred HHHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhC---CC-eEEEE
Confidence 34555555555532 134555544 7999998777666666642 45 67664
No 404
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=29.24 E-value=39 Score=35.66 Aligned_cols=21 Identities=19% Similarity=-0.059 Sum_probs=17.1
Q ss_pred hCCcEEEEcCCCcchHHHHHH
Q 004910 34 AKGHCLLEMPTGTGKTIALLS 54 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L~ 54 (724)
.|....|-+|+|+|||.-.+.
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~ 197 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHT 197 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHH
Confidence 356899999999999976553
No 405
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=29.22 E-value=22 Score=41.13 Aligned_cols=16 Identities=50% Similarity=0.613 Sum_probs=14.0
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
+.+++.+|+|||||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4589999999999984
No 406
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=29.10 E-value=29 Score=36.69 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=25.3
Q ss_pred CCHHHHHHHHHH----HHHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v----~~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
+...|.++-+.+ .+.+-+|. .++.=+.||+|||..+.
T Consensus 131 ~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHH
T ss_pred cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEee
Confidence 356788876654 33333453 56779999999999864
No 407
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=28.83 E-value=50 Score=36.71 Aligned_cols=36 Identities=11% Similarity=0.093 Sum_probs=25.4
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
.+.+++.+..|+|||.....-|...+.. ++ ||++..
T Consensus 8 ~~i~~~sgkGGvGKTT~a~~lA~~lA~~---G~-rVLlvd 43 (589)
T 1ihu_A 8 PPYLFFTGKGGVGKTSISCATAIRLAEQ---GK-RVLLVS 43 (589)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEEE
T ss_pred CEEEEEeCCCcCHHHHHHHHHHHHHHHC---CC-cEEEEE
Confidence 3578889999999998777666666643 44 555543
No 408
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=28.79 E-value=17 Score=34.78 Aligned_cols=42 Identities=17% Similarity=0.306 Sum_probs=27.0
Q ss_pred eEEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 2 ~~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
.+.++++...|+- .....|.-.+..|+...|-+|.|+|||--
T Consensus 10 ~l~~~~ls~~y~~--------~il~~vsl~i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 10 KLEIRDLSVGYDK--------PVLERITMTIEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EEEEEEEEEESSS--------EEEEEEEEEEETTCCEEEECCTTSSHHHH
T ss_pred eEEEEEEEEEeCC--------eEEeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 3566777766631 12222222345678999999999999963
No 409
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=28.78 E-value=34 Score=34.32 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=12.2
Q ss_pred cEEEEcCCCcchHH
Q 004910 37 HCLLEMPTGTGKTI 50 (724)
Q Consensus 37 ~~~iEApTGtGKTl 50 (724)
.+.|.+|+|+|||-
T Consensus 33 ii~I~G~sGsGKST 46 (290)
T 1odf_A 33 FIFFSGPQGSGKSF 46 (290)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 57789999999985
No 410
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=28.69 E-value=48 Score=35.36 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=21.2
Q ss_pred cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
.+++-+++|+|||-...--|..++.. .++ +|++..
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~--~G~-kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREK--HKK-KVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHT--SCC-CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHh--cCC-eEEEEe
Confidence 46667999999997655444444432 134 565543
No 411
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=28.62 E-value=32 Score=35.73 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=18.4
Q ss_pred cEEEEcCCCcchHHHHHHHHHHHHhh
Q 004910 37 HCLLEMPTGTGKTIALLSLITSYVLS 62 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L~~al~~~~~ 62 (724)
..+|-+|||+|||- |+=|+.|+..
T Consensus 25 ~~~i~G~NGaGKTT--ll~ai~~al~ 48 (365)
T 3qf7_A 25 ITVVEGPNGAGKSS--LFEAISFALF 48 (365)
T ss_dssp EEEEECCTTSSHHH--HHHHHHHHHH
T ss_pred eEEEECCCCCCHHH--HHHHHHHHhc
Confidence 67899999999995 3456666654
No 412
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=28.58 E-value=41 Score=35.99 Aligned_cols=36 Identities=19% Similarity=0.113 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHH----HHHhCC--cEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYMLELKR----ALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~~v~~----~l~~~~--~~~iEApTGtGKTla~L 53 (724)
...|.++-+.+.. .+-+|. .++.=+.||+|||..+.
T Consensus 114 ~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 114 YATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 3578887766543 333453 56779999999999864
No 413
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=28.51 E-value=34 Score=35.51 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=23.7
Q ss_pred HHHHHHHHHHH----HHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 19 PEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 19 ~~Q~e~~~~v~----~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
..|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 46777766553 2333454 46678999999999864
No 414
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=28.24 E-value=38 Score=35.84 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCC--------------------cEEEEcCCCcchHH
Q 004910 22 YSYMLELKRALDAKG--------------------HCLLEMPTGTGKTI 50 (724)
Q Consensus 22 ~e~~~~v~~~l~~~~--------------------~~~iEApTGtGKTl 50 (724)
.+.+..|.-.+..|. .+.+-+|+|+|||-
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKST 84 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSS 84 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHH
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHH
Confidence 345666666777777 89999999999996
No 415
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=28.20 E-value=1.1e+02 Score=31.51 Aligned_cols=34 Identities=21% Similarity=0.205 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHh--C--CcEEEEcCCCcchHHHH
Q 004910 19 PEQYSYMLELKRALDA--K--GHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~--~--~~~~iEApTGtGKTla~ 52 (724)
+...+.+..+.+.+.. + ..+++-+++|+|||-..
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 59 PDHREQAQQLLLRLLPDSGNAHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp HHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSSHHHHH
T ss_pred hhhHHHHHHHHHHhHhhcCCceEEEEECCCCCCHHHHH
Confidence 4444555566666642 2 25788999999999743
No 416
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=28.16 E-value=29 Score=35.82 Aligned_cols=36 Identities=14% Similarity=0.044 Sum_probs=25.3
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~~v~----~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
...|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 55 ~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 55 NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp TSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 557888876653 3333454 56779999999999863
No 417
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=28.10 E-value=32 Score=35.58 Aligned_cols=37 Identities=19% Similarity=0.033 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHH----HHHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v----~~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
+...|.++-+.+ .+.+-+|. .++.=+.||+|||..+.
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEee
Confidence 356788776653 33333453 56779999999999863
No 418
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=28.09 E-value=16 Score=35.17 Aligned_cols=44 Identities=20% Similarity=0.315 Sum_probs=27.3
Q ss_pred eEEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 2 ~~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
.+.++++...|+-.. ++ ....|.=.+..|+...|-+|.|+|||-
T Consensus 6 ~l~~~~l~~~y~~~~-~~----il~~vsl~i~~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 6 EVVMENVTAFWEEGG-TP----VLKDINFKIERGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp EEEEEEEEECSSTTS-CC----SEEEEEEEEETTCEEEEECCTTSSHHH
T ss_pred eEEEEEEEEEeCCCC-ce----eeeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 356777777764211 11 122222234567899999999999996
No 419
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=28.03 E-value=37 Score=42.78 Aligned_cols=42 Identities=17% Similarity=0.126 Sum_probs=28.2
Q ss_pred HHhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccch
Q 004910 32 LDAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTV 77 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~ 77 (724)
+..+...+|.+|+|||||.-.+.-+...+.. +. +++|.|-..
T Consensus 31 i~~G~i~lI~G~pGsGKT~LAlqla~~~~~~---G~-~vlYI~te~ 72 (1706)
T 3cmw_A 31 LPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDAEH 72 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEECTTS
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhC---CC-ceEEEEecC
Confidence 4456789999999999998666555544432 34 566655443
No 420
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=27.83 E-value=25 Score=37.30 Aligned_cols=36 Identities=17% Similarity=0.010 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHHH---HHhCC--cEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYMLELKRA---LDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~~v~~~---l~~~~--~~~iEApTGtGKTla~L 53 (724)
-..|.++-+.|... +-+|. .++.-+.||+|||..+.
T Consensus 117 ~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 117 LSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp TCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 45677766554432 22343 56779999999999863
No 421
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=27.82 E-value=19 Score=36.10 Aligned_cols=16 Identities=38% Similarity=0.382 Sum_probs=13.5
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..+++-+|+|+|||-.
T Consensus 34 ~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSL 49 (287)
T ss_dssp EEEEEECCTTSCTHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3588999999999963
No 422
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=27.76 E-value=20 Score=34.44 Aligned_cols=17 Identities=29% Similarity=0.260 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCcchHHH
Q 004910 35 KGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla 51 (724)
+..+++|++.|+|||-.
T Consensus 21 ~~~i~~~G~~g~GKst~ 37 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQ 37 (223)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45789999999999953
No 423
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=27.72 E-value=53 Score=32.89 Aligned_cols=35 Identities=20% Similarity=0.183 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
+.+.+-+|+|+|||-....-|..++.. ++ +|.+..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~---~~-~v~l~~ 133 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGK---GR-RPLLVA 133 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHT---TC-CEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc---CC-eEEEec
Confidence 356666999999996544333333322 34 565554
No 424
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=27.70 E-value=29 Score=35.99 Aligned_cols=36 Identities=14% Similarity=-0.000 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~~v~----~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
...|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 58 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 58 SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp TCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 456887776433 3333453 56779999999999764
No 425
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=27.64 E-value=29 Score=36.40 Aligned_cols=37 Identities=30% Similarity=0.214 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHH----HHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v~----~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
+...|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 3567888776532 3333453 46779999999999864
No 426
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=27.51 E-value=53 Score=34.90 Aligned_cols=33 Identities=21% Similarity=0.228 Sum_probs=19.9
Q ss_pred cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEE
Q 004910 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~ 73 (724)
.+++-+|+|+|||.....-|..++ . .++ +|++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~--~-~g~-~Vllv 132 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYK--G-KGR-RPLLV 132 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH--T-TTC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH--H-cCC-eEEEe
Confidence 466679999999975544333333 2 244 55544
No 427
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=27.48 E-value=23 Score=36.55 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=18.0
Q ss_pred hCCcEEEEcCCCcchHHHHHHHHH
Q 004910 34 AKGHCLLEMPTGTGKTIALLSLIT 57 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla~L~~al 57 (724)
.|....|.+|+|+|||--.+.-+.
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999976554333
No 428
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=27.42 E-value=44 Score=34.67 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=13.5
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..+.+-+|+|+|||-.
T Consensus 158 ~vi~lvG~nGsGKTTl 173 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTS 173 (359)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEEcCCCChHHHH
Confidence 4688999999999963
No 429
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=27.33 E-value=17 Score=35.49 Aligned_cols=44 Identities=9% Similarity=0.152 Sum_probs=27.7
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
+.++++...||-.. ++ .+..|-=.+..|+.+.|-+|.|+|||--
T Consensus 8 ~~~~~l~~~y~~~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 8 ITFRNIRFRYKPDS-PV----ILDNINLSIKQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp EEEEEEEEESSTTS-CE----EEEEEEEEEETTCEEEEECSTTSSHHHH
T ss_pred eeEEEEEEEeCCCC-cc----eeeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 56777877774111 11 2222222345678999999999999973
No 430
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=27.32 E-value=21 Score=37.18 Aligned_cols=37 Identities=19% Similarity=0.087 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHH---HHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLELK---RALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v~---~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
+...|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 57 ~~~~Q~~Vy~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 57 GNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp TTCCHHHHHHTTTHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred CCCCcceehhhhhhhhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 3567887766542 2333454 46778999999999863
No 431
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=27.31 E-value=16 Score=35.09 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=26.8
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.++++...|+- ++ ....|.=.+..|+...|-+|.|+|||-
T Consensus 5 l~~~~l~~~y~~---~~----~l~~vsl~i~~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 5 LRAENIKKVIRG---YE----ILKGISLSVKKGEFVSIIGASGSGKST 45 (224)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEEECTTSCHHH
T ss_pred EEEEeEEEEECC---Ee----eEeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 567777776642 11 222222234567889999999999995
No 432
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=27.06 E-value=25 Score=36.40 Aligned_cols=36 Identities=25% Similarity=0.173 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHH----HHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 18 YPEQYSYMLELK----RALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 18 r~~Q~e~~~~v~----~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
...|.++-+.+. +.+-+|. .++.=+.||+|||..+.
T Consensus 83 ~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 83 TSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp TCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred CCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 456888776543 3333453 56779999999999864
No 433
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=27.05 E-value=91 Score=30.78 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHh-CCcEEE-E--cCCCcchHHHHHHHHHHHHhhCCCCCceEEEE
Q 004910 23 SYMLELKRALDA-KGHCLL-E--MPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (724)
Q Consensus 23 e~~~~v~~~l~~-~~~~~i-E--ApTGtGKTla~L~~al~~~~~~~~~~~~vvi~ 73 (724)
+.+..+.+.+.. ++.+.| - +--|+|||.....-|...+.. ++ ||++.
T Consensus 21 ~~~~~~~r~~~~~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~---G~-rVlli 71 (298)
T 2oze_A 21 KILEELRRILSNKNEAIVILNNYFKGGVGKSKLSTMFAYLTDKL---NL-KVLMI 71 (298)
T ss_dssp HHHHHHHHHHHHHCSCEEEEECCSSSSSSHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCchHHHHHHHHHHHHHhC---CC-eEEEE
Confidence 334444444443 344444 4 478999997666545444432 45 67653
No 434
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=27.03 E-value=28 Score=32.42 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=13.6
Q ss_pred CCcEEEEcCCCcchHH
Q 004910 35 KGHCLLEMPTGTGKTI 50 (724)
Q Consensus 35 ~~~~~iEApTGtGKTl 50 (724)
|..+.+-+|+|+|||-
T Consensus 1 G~~i~i~G~nG~GKTT 16 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTT 16 (189)
T ss_dssp CCCEEEESCCSSCHHH
T ss_pred CCEEEEECCCCChHHH
Confidence 4567899999999995
No 435
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=26.97 E-value=18 Score=35.67 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=28.7
Q ss_pred eEEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 2 ~~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
.+.++++...|+-...++ ....|.-.+..|+.+.|-+|.|+|||--
T Consensus 17 ~l~i~~l~~~y~~~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQTNHR----TLKSINFFIPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CEEEEEEEECCTTCCSSC----SEEEEEEEECTTCEEEEECSTTSSHHHH
T ss_pred eEEEEEEEEEeCCCCcCc----eeEeeEEEECCCCEEEEECCCCCCHHHH
Confidence 366788887775321011 1222222345678999999999999963
No 436
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=26.90 E-value=19 Score=34.91 Aligned_cols=29 Identities=14% Similarity=-0.190 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 23 SYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 23 e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
.....|.-.+..+..+.|-+|.|+|||-.
T Consensus 13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl 41 (245)
T 2jeo_A 13 LGTENLYFQSMRPFLIGVSGGTASGKSTV 41 (245)
T ss_dssp ----------CCSEEEEEECSTTSSHHHH
T ss_pred eeecceeccCCCCEEEEEECCCCCCHHHH
Confidence 34555555566677888999999999953
No 437
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=26.73 E-value=17 Score=40.58 Aligned_cols=43 Identities=16% Similarity=0.218 Sum_probs=29.0
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.++++...||-.. ....+.+.-.+..|+...+-+|+|+|||-
T Consensus 342 i~~~~v~~~y~~~~-----~~~l~~i~l~i~~G~~~~ivG~sGsGKST 384 (582)
T 3b5x_A 342 VDVKDVTFTYQGKE-----KPALSHVSFSIPQGKTVALVGRSGSGKST 384 (582)
T ss_pred EEEEEEEEEcCCCC-----ccccccceEEECCCCEEEEECCCCCCHHH
Confidence 45666766665211 12344555556778999999999999995
No 438
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=26.68 E-value=25 Score=32.29 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.6
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
++.+-+|.|+|||--
T Consensus 2 ~i~l~G~nGsGKTTL 16 (178)
T 1ye8_A 2 KIIITGEPGVGKTTL 16 (178)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467899999999963
No 439
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=26.37 E-value=25 Score=40.74 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=16.1
Q ss_pred CcEEEEcCCCcchHHHHHHHHHH
Q 004910 36 GHCLLEMPTGTGKTIALLSLITS 58 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~ 58 (724)
+.+++.+|+|||||+. .-|++
T Consensus 512 ~gvLl~GPPGtGKT~l--AkaiA 532 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLL--AKAIA 532 (806)
T ss_dssp SCCEEESSTTSSHHHH--HHHHH
T ss_pred ceEEEecCCCCCchHH--HHHHH
Confidence 4589999999999974 44444
No 440
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=26.31 E-value=16 Score=34.33 Aligned_cols=16 Identities=25% Similarity=0.023 Sum_probs=13.6
Q ss_pred CCcEEEEcCCCcchHH
Q 004910 35 KGHCLLEMPTGTGKTI 50 (724)
Q Consensus 35 ~~~~~iEApTGtGKTl 50 (724)
+..+.|.+|+|+|||-
T Consensus 21 ~~~i~i~G~~GsGKST 36 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTT 36 (207)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 4567899999999996
No 441
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=26.21 E-value=44 Score=35.60 Aligned_cols=34 Identities=24% Similarity=0.093 Sum_probs=20.8
Q ss_pred cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
.+++-+|+|+|||-....-|..++.. ++ +|++.+
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~---G~-kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKR---GL-KPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHH---HC-CEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc---CC-eEEEEe
Confidence 68889999999996544333333322 34 565554
No 442
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=26.04 E-value=36 Score=35.67 Aligned_cols=37 Identities=19% Similarity=0.126 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHH----HHHHHhCC--cEEEEcCCCcchHHHHH
Q 004910 17 IYPEQYSYMLEL----KRALDAKG--HCLLEMPTGTGKTIALL 53 (724)
Q Consensus 17 ~r~~Q~e~~~~v----~~~l~~~~--~~~iEApTGtGKTla~L 53 (724)
+...|.++-+.+ .+.+-+|. .++.=+.||+|||..+.
T Consensus 111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~ 153 (387)
T 2heh_A 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMG 153 (387)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC
T ss_pred cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEec
Confidence 356788877654 33333453 56779999999999864
No 443
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=26.02 E-value=49 Score=33.21 Aligned_cols=34 Identities=26% Similarity=0.110 Sum_probs=20.4
Q ss_pred cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
.+++-+|+|+|||-....-|..++.. ++ +|++..
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~---g~-~v~l~~ 133 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKK---GF-KVGLVG 133 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHT---TC-CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CC-eEEEEe
Confidence 46677999999996544433333322 34 565543
No 444
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=25.95 E-value=19 Score=35.42 Aligned_cols=41 Identities=20% Similarity=0.404 Sum_probs=27.2
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.++++...|+- ++ ....|.=.+..|+...|-+|.|+|||-
T Consensus 8 l~i~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 8 LRTENIVKYFGE---FK----ALDGVSISVNKGDVTLIIGPNGSGKST 48 (257)
T ss_dssp EEEEEEEEEETT---EE----EEEEECCEEETTCEEEEECSTTSSHHH
T ss_pred EEEeeeEEEECC---Ee----eEeeeEEEEeCCCEEEEECCCCCCHHH
Confidence 567777777642 11 222233344567899999999999996
No 445
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=25.70 E-value=17 Score=35.47 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=27.4
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
+.++++...|+ .. ++ ....|.-.+..|+.+.|-+|.|+|||--
T Consensus 2 l~~~~l~~~y~-~~-~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 2 LSARHVDFAYD-DS-EQ----ILRDISFEAQPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp EEEEEEEECSS-SS-SC----SEEEEEEEECTTEEEEEECCTTSSHHHH
T ss_pred EEEEEEEEEeC-CC-Cc----eEEEeEEEEcCCCEEEEECCCCCCHHHH
Confidence 56778877774 11 11 1222222345678899999999999963
No 446
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=25.69 E-value=29 Score=31.39 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=13.1
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.++|.+|.|+|||-.
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 688999999999863
No 447
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=25.60 E-value=38 Score=34.11 Aligned_cols=18 Identities=11% Similarity=0.015 Sum_probs=14.4
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.+..+.|-+|+|+|||-.
T Consensus 79 ~g~iigI~G~~GsGKSTl 96 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTT 96 (308)
T ss_dssp CCEEEEEEECTTSSHHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 345788899999999953
No 448
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=25.57 E-value=47 Score=31.05 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEcCCCcchHH
Q 004910 19 PEQYSYMLELKRALDAK--GHCLLEMPTGTGKTI 50 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~~--~~~~iEApTGtGKTl 50 (724)
+...+.+..+...+..+ ..+++-+++|+|||-
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTT 45 (221)
T 2wsm_A 12 AENKRLAEKNREALRESGTVAVNIMGAIGSGKTL 45 (221)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHH
T ss_pred hhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHH
Confidence 45556666666666543 367888999999995
No 449
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=25.43 E-value=30 Score=31.44 Aligned_cols=16 Identities=25% Similarity=0.328 Sum_probs=13.7
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..++|.+|+|+|||-.
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 4688999999999964
No 450
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=25.41 E-value=25 Score=33.22 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=13.8
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
..++|.+|.|+|||-.
T Consensus 5 ~~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 5 YIVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEEECCTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688999999999963
No 451
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.30 E-value=20 Score=34.85 Aligned_cols=41 Identities=17% Similarity=0.245 Sum_probs=26.6
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.++++...|+- ++ ....|.=.+..|+...|-+|.|+|||-
T Consensus 7 l~~~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 7 LEVQSLHVYYGA---IH----AIKGIDLKVPRGQIVTLIGANGAGKTT 47 (240)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEECSTTSSHHH
T ss_pred EEEEeEEEEECC---ee----EEeeeEEEEcCCCEEEEECCCCCCHHH
Confidence 567777777642 11 122222234567899999999999996
No 452
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=25.27 E-value=20 Score=35.26 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=26.3
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
+.++++...|+- ++ ....|--.+..|....|-+|.|+|||--
T Consensus 16 l~i~~l~~~y~~---~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 16 VVVKDLRKRIGK---KE----ILKGISFEIEEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEECTTCEEEEECCTTSSHHHH
T ss_pred EEEEEEEEEECC---EE----EEEeeEEEEcCCcEEEEECCCCCCHHHH
Confidence 456777766641 11 1222222345678999999999999963
No 453
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=24.98 E-value=20 Score=35.09 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=16.5
Q ss_pred HHhCCcEEEEcCCCcchHH
Q 004910 32 LDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 32 l~~~~~~~iEApTGtGKTl 50 (724)
+..|+.+.|-+|.|+|||-
T Consensus 23 i~~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKST 41 (249)
T ss_dssp EETTCEEEEECCTTSSHHH
T ss_pred EcCCCEEEEECCCCCcHHH
Confidence 3467889999999999996
No 454
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=24.86 E-value=20 Score=35.00 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=27.5
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
+.++++...|+- ++ ....|.=.+..|+...|-+|.|+|||--
T Consensus 4 l~~~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 4 LEIRDLWASIDG---ET----ILKGVNLVVPKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEECSTTSSHHHH
T ss_pred EEEEeEEEEECC---EE----EEeceEEEEcCCCEEEEECCCCCCHHHH
Confidence 667788777641 11 1222222345678999999999999963
No 455
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=24.82 E-value=69 Score=29.99 Aligned_cols=33 Identities=18% Similarity=0.100 Sum_probs=21.7
Q ss_pred cEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEE
Q 004910 37 HCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (724)
Q Consensus 37 ~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~ 73 (724)
.++.-.-+|+|||...+.-|..+++. ++ ||++.
T Consensus 4 I~v~s~kgGvGKTt~a~nLa~~la~~---G~-rVll~ 36 (224)
T 1byi_A 4 YFVTGTDTEVGKTVASCALLQAAKAA---GY-RTAGY 36 (224)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHHHHT---TC-CEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC---CC-CEEEE
Confidence 34556668999998776555555532 45 78774
No 456
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=24.80 E-value=1.4e+02 Score=29.52 Aligned_cols=51 Identities=12% Similarity=0.146 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHh------CCc-EEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEE
Q 004910 19 PEQYSYMLELKRALDA------KGH-CLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (724)
Q Consensus 19 ~~Q~e~~~~v~~~l~~------~~~-~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~ 73 (724)
..-.|....+...+.- .+. ++.-+-.|+|||.....-|..++.. ++ ||++.
T Consensus 70 ~~~~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~---G~-rVLLI 127 (286)
T 3la6_A 70 DLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQT---NK-RVLLI 127 (286)
T ss_dssp CHHHHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTT---TC-CEEEE
T ss_pred CHHHHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhC---CC-CEEEE
Confidence 3345666666655532 133 4445567999998777666666632 45 67665
No 457
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=24.74 E-value=63 Score=41.41 Aligned_cols=42 Identities=17% Similarity=0.115 Sum_probs=29.2
Q ss_pred HhCCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccchh
Q 004910 33 DAKGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRTVH 78 (724)
Q Consensus 33 ~~~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T~~ 78 (724)
..+.++++.+|+|||||.-.+.-+...++ .+. +++|.|-.++
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k---~Ge-~~~Fit~ee~ 1120 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGK-TCAFIDAEHA 1120 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTC-CEEEECTTSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHH---cCC-eEEEEEcccc
Confidence 35578999999999999866644333332 256 7888876654
No 458
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=24.64 E-value=21 Score=35.35 Aligned_cols=41 Identities=17% Similarity=0.244 Sum_probs=26.3
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.++++...|+- ++ ....|.=.+..|+.+.|-+|.|+|||-
T Consensus 21 l~~~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 21 LSIKDLHVSVED---KA----ILRGLSLDVHPGEVHAIMGPNGSGKST 61 (267)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEECTTCEEEEECCTTSSHHH
T ss_pred EEEEeEEEEECC---EE----EEEeeEEEEcCCCEEEEECCCCCCHHH
Confidence 566777766631 11 122222234567899999999999996
No 459
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=24.48 E-value=21 Score=35.25 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=29.7
Q ss_pred CeEEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 1 MIFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 1 ~~~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
|.+.++++...|+..... +......|.-.+..|..+.|-+|.|+|||-
T Consensus 1 ~~l~~~~l~~~y~~~~~~--~~~vl~~vsl~i~~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 1 MRIEVVNVSHIFHRGTPL--EKKALENVSLVINEGECLLVAGNTGSGKST 48 (266)
T ss_dssp CCEEEEEEEEEESTTSTT--CEEEEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred CEEEEEEEEEEecCCCcc--ccceeeeeEEEEcCCCEEEEECCCCCcHHH
Confidence 557788888887521100 001122222234567889999999999996
No 460
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=24.47 E-value=21 Score=35.05 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=27.6
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.++++...|+- . ++ ....|.-.+..|+.+.|-+|.|+|||-
T Consensus 5 l~i~~l~~~y~~-~-~~----vl~~isl~i~~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 5 LSVENLGFYYQA-E-NF----LFQQLNFDLNKGDILAVLGQNGCGKST 46 (253)
T ss_dssp EEEEEEEEEETT-T-TE----EEEEEEEEEETTCEEEEECCSSSSHHH
T ss_pred EEEeeEEEEeCC-C-Ce----EEEEEEEEECCCCEEEEECCCCCCHHH
Confidence 677888877751 1 11 122222234567889999999999996
No 461
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=24.41 E-value=21 Score=35.63 Aligned_cols=42 Identities=12% Similarity=0.196 Sum_probs=29.0
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.+++++..|+-.. + ....|.=.+..|..+.|-+|.|+|||-
T Consensus 8 l~i~~ls~~y~~~~--~----~L~~isl~i~~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 8 LKVEELNYNYSDGT--H----ALKGINMNIKRGEVTAILGGNGVGKST 49 (275)
T ss_dssp EEEEEEEEECTTSC--E----EEEEEEEEEETTSEEEEECCTTSSHHH
T ss_pred EEEEEEEEEECCCC--e----EEEeeEEEEcCCCEEEEECCCCCCHHH
Confidence 67888888886432 1 222222244567899999999999996
No 462
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=24.36 E-value=30 Score=32.68 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=13.6
Q ss_pred CCcEEEEcCCCcchHH
Q 004910 35 KGHCLLEMPTGTGKTI 50 (724)
Q Consensus 35 ~~~~~iEApTGtGKTl 50 (724)
+..+.|-+|+|+|||-
T Consensus 5 ~~~i~i~G~~GsGKST 20 (227)
T 1cke_A 5 APVITIDGPSGAGKGT 20 (227)
T ss_dssp SCEEEEECCTTSSHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3578899999999985
No 463
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=24.13 E-value=22 Score=35.31 Aligned_cols=44 Identities=25% Similarity=0.331 Sum_probs=27.5
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.++++.+.|+-...+ ..+..|.=.+..|+.+.|-+|.|+|||-
T Consensus 17 l~~~~l~~~y~~~~~~----~vl~~vsl~i~~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 17 VKFQDVSFAYPNHPNV----QVLQGLTFTLYPGKVTALVGPNGSGKST 60 (271)
T ss_dssp EEEEEEEECCTTCTTS----CCEEEEEEEECTTCEEEEECSTTSSHHH
T ss_pred EEEEEEEEEeCCCCCc----eeeEeeEEEECCCCEEEEECCCCCCHHH
Confidence 5677777776531001 1122222234567899999999999996
No 464
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=23.94 E-value=40 Score=37.37 Aligned_cols=29 Identities=17% Similarity=0.323 Sum_probs=20.6
Q ss_pred HHHHHHHHHHh----CCcEEEEcCCCcchHHHH
Q 004910 24 YMLELKRALDA----KGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 24 ~~~~v~~~l~~----~~~~~iEApTGtGKTla~ 52 (724)
.+..+.+.+.. .+.++|.+|.|+|||-.+
T Consensus 132 ~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa 164 (591)
T 1z6t_A 132 LVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLA 164 (591)
T ss_dssp HHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHHHhcccCCCceEEEEcCCCCCHHHHH
Confidence 33456666652 357899999999999743
No 465
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=23.91 E-value=22 Score=33.97 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=13.7
Q ss_pred hCCcEEEEcCCCcchHH
Q 004910 34 AKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTl 50 (724)
+.+.++|-+|+|+|||-
T Consensus 28 k~kiI~llGpPGsGKgT 44 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGT 44 (217)
T ss_dssp SCEEEEEECCTTCCHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 34578889999999964
No 466
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=23.79 E-value=22 Score=35.04 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=27.1
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.++++...|+- ++ ....|.=.+..|+.+.|-+|.|+|||-
T Consensus 7 l~i~~l~~~y~~---~~----vl~~vsl~i~~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 7 LHVIDLHKRYGG---HE----VLKGVSLQARAGDVISIIGSSGSGKST 47 (262)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEECTTCEEEEECCTTSSHHH
T ss_pred EEEeeEEEEECC---EE----EEEeeEEEEcCCCEEEEECCCCCCHHH
Confidence 667788777642 11 222222234567889999999999996
No 467
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=23.65 E-value=41 Score=34.43 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=18.8
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhh
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLS 62 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~ 62 (724)
+..+|-+|+|+|||-. +=|+.|+..
T Consensus 24 ~~~~i~G~NGsGKS~l--leAi~~~l~ 48 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSL--LDAILVGLY 48 (339)
T ss_dssp EEEEEECCTTSSHHHH--HHHHHHHHH
T ss_pred CeEEEECCCCCCHHHH--HHHHHHHhc
Confidence 5678999999999973 445666554
No 468
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=23.43 E-value=65 Score=33.85 Aligned_cols=44 Identities=23% Similarity=0.290 Sum_probs=28.5
Q ss_pred eeeCCCCCCCHH--HHHHHHHHHHHHH---hCCcEEEEcCCCcchHHHH
Q 004910 9 TVYFPYDNIYPE--QYSYMLELKRALD---AKGHCLLEMPTGTGKTIAL 52 (724)
Q Consensus 9 ~~~Fp~~~~r~~--Q~e~~~~v~~~l~---~~~~~~iEApTGtGKTla~ 52 (724)
+-.+|.+..++. ..+.--.+.+++. .|+...|-||.|+|||.-.
T Consensus 144 ~Pi~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 144 TPDYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp CEECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHH
T ss_pred CCCCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHH
Confidence 334666544443 2233335666663 4789999999999999854
No 469
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=23.20 E-value=23 Score=35.07 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=26.0
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
+.+.+++..|+-. + ....|.=.+..|+.+.|-+|.|+|||-
T Consensus 12 l~~~~l~~~~~~~---~----vL~~vsl~i~~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 12 LEASHLHYHVQQQ---A----LINDVSLHIASGEMVAIIGPNGAGKST 52 (266)
T ss_dssp EEEEEEEEEETTE---E----EEEEEEEEEETTCEEEEECCTTSCHHH
T ss_pred EEEEeEEEEeCCe---e----EEEeeEEEEcCCCEEEEECCCCCcHHH
Confidence 5566766665321 1 222222234567899999999999996
No 470
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=22.91 E-value=20 Score=36.34 Aligned_cols=43 Identities=16% Similarity=0.248 Sum_probs=27.5
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
+.+++|.+.||-. ++ ....|.=.+..|+.+.|-+|+|+|||--
T Consensus 54 i~~~~vs~~y~~~--~~----vL~~isl~i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 54 IEFENVHFSYADG--RE----TLQDVSFTVMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp EEEEEEEEESSTT--CE----EEEEEEEEECTTCEEEEESSSCHHHHHH
T ss_pred EEEEEEEEEcCCC--Cc----eeeeeeEEEcCCCEEEEECCCCchHHHH
Confidence 5667777777522 11 1222222345678999999999999963
No 471
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=22.86 E-value=70 Score=32.83 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=24.8
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEcc
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~ 75 (724)
..+++-+..|+|||.....-|...+.. ++ ||++..-
T Consensus 27 ~i~v~sgKGGvGKTTvA~~LA~~lA~~---G~-rVLlvD~ 62 (349)
T 3ug7_A 27 KYIMFGGKGGVGKTTMSAATGVYLAEK---GL-KVVIVST 62 (349)
T ss_dssp EEEEEECSSSTTHHHHHHHHHHHHHHS---SC-CEEEEEC
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHC---CC-eEEEEeC
Confidence 367788999999998776656666543 45 6655553
No 472
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=22.82 E-value=57 Score=32.07 Aligned_cols=49 Identities=6% Similarity=-0.008 Sum_probs=25.0
Q ss_pred CCcEEEEcCCCcchH-HHHHHHHHHHHhhCCCCCceEEEEccchhhHHHHHHHHHh
Q 004910 35 KGHCLLEMPTGTGKT-IALLSLITSYVLSKPENPVKLIYCTRTVHEMEKTLAELKL 89 (724)
Q Consensus 35 ~~~~~iEApTGtGKT-la~L~~al~~~~~~~~~~~~vvi~T~T~~l~~Q~~~el~~ 89 (724)
+...++.+++|+||| +++-. +..-+ .. +. +++|.|-..+ .+|+++.++.
T Consensus 21 gs~~li~g~p~~~~~~l~~qf-l~~g~-~~--Ge-~~~~~~~~e~-~~~l~~~~~~ 70 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYI-LSRKL-KS--DN-LVGMFSISYP-LQLIIRILSR 70 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHH-HHHHH-HT--TC-EEEEEECSSC-HHHHHHHHHH
T ss_pred CcEEEEEeCCCccHHHHHHHH-HHHHH-HC--CC-cEEEEEEeCC-HHHHHHHHHH
Confidence 346777856666666 33322 12222 22 45 7777775433 3455555444
No 473
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=22.77 E-value=24 Score=34.86 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=27.0
Q ss_pred EEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHHH
Q 004910 3 FKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 3 ~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTla 51 (724)
+.++++...|+- ++ ....|-=.+..|+...|-+|.|+|||--
T Consensus 25 l~i~~l~~~y~~---~~----vL~~vsl~i~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 25 IDVHQLKKSFGS---LE----VLKGINVHIREGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp EEEEEEEEEETT---EE----EEEEEEEEECTTCEEEEECCTTSSHHHH
T ss_pred EEEEeEEEEECC---EE----EEEeeEEEEcCCCEEEEEcCCCCcHHHH
Confidence 567777776641 11 1222222345678899999999999963
No 474
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.68 E-value=75 Score=32.16 Aligned_cols=36 Identities=17% Similarity=0.092 Sum_probs=25.2
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEcc
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTR 75 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~ 75 (724)
..+++-+..|+|||.....-|...+.. ++ ||++...
T Consensus 15 ~i~v~sgKGGvGKTTvA~~LA~~lA~~---G~-rVLlvD~ 50 (324)
T 3zq6_A 15 TFVFIGGKGGVGKTTISAATALWMARS---GK-KTLVIST 50 (324)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT---TC-CEEEEEC
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHC---CC-cEEEEeC
Confidence 467889999999998776666666643 45 6655543
No 475
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=22.57 E-value=24 Score=35.22 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=27.7
Q ss_pred eEEEcceeeeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEcCCCcchHH
Q 004910 2 IFKLEDVTVYFPYDNIYPEQYSYMLELKRALDAKGHCLLEMPTGTGKTI 50 (724)
Q Consensus 2 ~~~i~~~~~~Fp~~~~r~~Q~e~~~~v~~~l~~~~~~~iEApTGtGKTl 50 (724)
.+.++++...|+- ++ ....|-=.+..|+...|-+|.|+|||-
T Consensus 21 ~l~~~~l~~~y~~---~~----vL~~isl~i~~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KT----ILKKISWQIAKGDKWILYGLNGAGKTT 62 (279)
T ss_dssp EEEEEEEEEEETT---EE----EEEEEEEEEETTCEEEEECCTTSSHHH
T ss_pred eEEEEeEEEEECC---EE----EEEeeeEEEcCCCEEEEECCCCCcHHH
Confidence 4667788777642 11 222232234567899999999999996
No 476
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=22.40 E-value=78 Score=32.32 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=23.9
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEc
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCT 74 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T 74 (724)
+.+++-+--|+|||.....-|..++. .++ ||++..
T Consensus 17 ~i~~~sgkGGvGKTt~a~~lA~~la~---~g~-~vllid 51 (334)
T 3iqw_A 17 RWIFVGGKGGVGKTTTSCSLAIQLAK---VRR-SVLLLS 51 (334)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHTT---SSS-CEEEEE
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHh---CCC-cEEEEE
Confidence 57888999999999876655555553 245 565444
No 477
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=22.17 E-value=32 Score=31.94 Aligned_cols=15 Identities=27% Similarity=0.244 Sum_probs=12.9
Q ss_pred cEEEEcCCCcchHHH
Q 004910 37 HCLLEMPTGTGKTIA 51 (724)
Q Consensus 37 ~~~iEApTGtGKTla 51 (724)
.+.|.+|.|+|||-.
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 578899999999973
No 478
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=22.07 E-value=37 Score=36.68 Aligned_cols=31 Identities=16% Similarity=-0.181 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhCC-------cEEEEcCCCcchHHH
Q 004910 20 EQYSYMLELKRALDAKG-------HCLLEMPTGTGKTIA 51 (724)
Q Consensus 20 ~Q~e~~~~v~~~l~~~~-------~~~iEApTGtGKTla 51 (724)
+|.+.-..+.-++..|. |+++++++|| ||..
T Consensus 217 G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~L 254 (506)
T 3f8t_A 217 GAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEI 254 (506)
T ss_dssp TCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHH
T ss_pred CCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHH
Confidence 45555455555555665 8999999999 9984
No 479
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=21.82 E-value=56 Score=41.12 Aligned_cols=38 Identities=16% Similarity=0.134 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEEccc
Q 004910 35 KGHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYCTRT 76 (724)
Q Consensus 35 ~~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~T~T 76 (724)
+..++|-+|+|+|||.-.+.-+...+.. +. +|+|.+--
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~---g~-~VlyiS~E 769 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQRE---GK-TCAFIDAE 769 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT---TC-CEEEECTT
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHc---CC-CeEEEecc
Confidence 4578999999999998776655544432 34 56665433
No 480
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=21.79 E-value=24 Score=35.41 Aligned_cols=18 Identities=28% Similarity=0.195 Sum_probs=15.3
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.|+...|-+|.|+|||--
T Consensus 63 ~Ge~~~i~G~NGsGKSTL 80 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSL 80 (290)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 456789999999999973
No 481
>2vt1_A Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=21.50 E-value=42 Score=24.04 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=11.4
Q ss_pred HHhhhccCcEEEEc
Q 004910 195 ARHMVQFANVVVYS 208 (724)
Q Consensus 195 ~r~~~~~adivv~n 208 (724)
+...+.+|||||+|
T Consensus 39 m~~~Vp~AdvVItN 52 (52)
T 2vt1_A 39 TKSDIRNSKLVVMN 52 (52)
T ss_dssp HHHHHHTCSEEEEC
T ss_pred HHhcCCCCCEeecC
Confidence 34568899999998
No 482
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=21.32 E-value=52 Score=35.71 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=20.7
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHhhCCCCCceEEEE
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVLSKPENPVKLIYC 73 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~~~~~~~~~vvi~ 73 (724)
..+.|-+|+|+|||-..-+ |+.... +.++ +|.+.
T Consensus 294 eVI~LVGpNGSGKTTLl~~--LAgll~-~~~G-~V~l~ 327 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGK--LARQFE-QQGK-SVMLA 327 (503)
T ss_dssp EEEEEECCTTSSHHHHHHH--HHHHHH-HTTC-CEEEE
T ss_pred eEEEEECCCcccHHHHHHH--HHHHhh-hcCC-eEEEe
Confidence 4678899999999964332 222111 2245 67775
No 483
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=21.03 E-value=68 Score=32.50 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHh----------------CCcEEEEcCCCcchHHHHH
Q 004910 22 YSYMLELKRALDA----------------KGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 22 ~e~~~~v~~~l~~----------------~~~~~iEApTGtGKTla~L 53 (724)
-+.+..+...+.+ |.-+++-++.|+|||-..+
T Consensus 115 s~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~ 162 (314)
T 1ko7_A 115 TQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETAL 162 (314)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHH
T ss_pred hHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHH
Confidence 4556677777776 6779999999999975433
No 484
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=20.97 E-value=38 Score=23.84 Aligned_cols=13 Identities=8% Similarity=0.248 Sum_probs=10.6
Q ss_pred HhhhccCcEEEEc
Q 004910 196 RHMVQFANVVVYS 208 (724)
Q Consensus 196 r~~~~~adivv~n 208 (724)
...+.+|||||+|
T Consensus 36 ~~~Vp~AdvVitN 48 (48)
T 3c01_A 36 KSDIENSRLIVAN 48 (48)
T ss_pred HhcCCCCCEeecC
Confidence 3457899999998
No 485
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=20.91 E-value=39 Score=32.85 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.2
Q ss_pred hCCcEEEEcCCCcchHHH
Q 004910 34 AKGHCLLEMPTGTGKTIA 51 (724)
Q Consensus 34 ~~~~~~iEApTGtGKTla 51 (724)
.+..+.|-+|+|+|||-.
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456889999999999963
No 486
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=20.47 E-value=39 Score=31.58 Aligned_cols=13 Identities=31% Similarity=0.409 Sum_probs=11.7
Q ss_pred EEEEcCCCcchHH
Q 004910 38 CLLEMPTGTGKTI 50 (724)
Q Consensus 38 ~~iEApTGtGKTl 50 (724)
+++|++-|+|||-
T Consensus 3 I~~EG~DGsGKsT 15 (197)
T 3hjn_A 3 ITFEGIDGSGKST 15 (197)
T ss_dssp EEEECSTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 6789999999995
No 487
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.33 E-value=43 Score=33.96 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=19.3
Q ss_pred CcEEEEcCCCcchHHHHHHHHHHHHh
Q 004910 36 GHCLLEMPTGTGKTIALLSLITSYVL 61 (724)
Q Consensus 36 ~~~~iEApTGtGKTla~L~~al~~~~ 61 (724)
+..+|-+|+|+|||- |+-|+.|+.
T Consensus 25 g~~~i~G~NGsGKS~--ll~ai~~ll 48 (322)
T 1e69_A 25 RVTAIVGPNGSGKSN--IIDAIKWVF 48 (322)
T ss_dssp SEEEEECCTTTCSTH--HHHHHHHTS
T ss_pred CcEEEECCCCCcHHH--HHHHHHHHh
Confidence 488999999999997 456677763
No 488
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=20.23 E-value=28 Score=31.87 Aligned_cols=16 Identities=19% Similarity=0.021 Sum_probs=12.7
Q ss_pred CcEEEEcCCCcchHHH
Q 004910 36 GHCLLEMPTGTGKTIA 51 (724)
Q Consensus 36 ~~~~iEApTGtGKTla 51 (724)
+.+.|.+|+|+|||-.
T Consensus 3 ~~v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTL 18 (171)
T ss_dssp CEEEEEESCHHHHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3567888999999953
No 489
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=20.07 E-value=65 Score=39.08 Aligned_cols=107 Identities=15% Similarity=0.139 Sum_probs=72.6
Q ss_pred cCCcEEEEecChHHHHHHHHHHhhcccHHHHhcCcceEEeCCC-chhHHHHHHHHHHhccCCCCeEEEEeecCccccccc
Q 004910 531 VPDGIVCFFVSYSYMDEIIATWNDSGILKEIMQHKLVFIETQD-VVETTLALDNYRKACDCGRGAVFFSVARGKVAEGID 609 (724)
Q Consensus 531 ~~g~~Lvlf~Sy~~l~~v~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~~~~~f~~~~~~~~~~vL~~v~~g~~~EGiD 609 (724)
.++.++||+++.+..+.+++.+++.. .+.+..++.++- ..++..+++.|++ |+..||+|+ ..+.+|||
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~-----p~~~v~~lhg~~~~~eR~~il~~F~~----g~~~VLVaT--~v~e~GiD 879 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELV-----PEARIAIGHGQMRERELERVMNDFHH----QRFNVLVCT--TIIETGID 879 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHC-----TTSCEEECCSSCCHHHHHHHHHHHHT----TSCCEEEES--STTGGGSC
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhC-----CCCeEEEEeCCCCHHHHHHHHHHHHc----CCCcEEEEC--Ccceeeec
Confidence 46889999999999999999887531 111223333322 2346678888875 566799987 58999999
Q ss_pred CCCCCceEEEEEccCCCCCccHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHHhhcccccCCCCeEEEEEE
Q 004910 610 FDRHYGRLVIMFGVPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFA 680 (724)
Q Consensus 610 ~~~~~~r~vii~glPfp~~~dp~~~~~~~~l~~~~~~~~~~~~~~~a~~~v~Q~~GR~iR~~~D~g~vvll 680 (724)
+|+ ++.||+.+.+... +..+.|.+||+-|.... |.++++
T Consensus 880 ip~--v~~VIi~~~~~~~-----------------------------l~~l~Qr~GRvgR~g~~-g~~~ll 918 (1151)
T 2eyq_A 880 IPT--ANTIIIERADHFG-----------------------------LAQLHQLRGRVGRSHHQ-AYAWLL 918 (1151)
T ss_dssp CTT--EEEEEETTTTSSC-----------------------------HHHHHHHHTTCCBTTBC-EEEEEE
T ss_pred ccC--CcEEEEeCCCCCC-----------------------------HHHHHHHHhccCcCCCc-eEEEEE
Confidence 997 6778876542111 12356999999998654 544444
No 490
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=20.02 E-value=1.8e+02 Score=35.00 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHHHHHHHh---CCcEEEEcCCCcchHHHHH
Q 004910 16 NIYPEQYSYMLELKRALDA---KGHCLLEMPTGTGKTIALL 53 (724)
Q Consensus 16 ~~r~~Q~e~~~~v~~~l~~---~~~~~iEApTGtGKTla~L 53 (724)
..|+...+ .+.+.+.. .+.+.|.+|.|+|||-.+.
T Consensus 131 VGRe~eLe---eL~elL~~~d~~RVV~IvGmGGIGKTTLAk 168 (1221)
T 1vt4_I 131 VSRLQPYL---KLRQALLELRPAKNVLIDGVLGSGKTWVAL 168 (1221)
T ss_dssp CCCHHHHH---HHHHHHHHCCSSCEEEECCSTTSSHHHHHH
T ss_pred CCcHHHHH---HHHHHHhccCCCeEEEEEcCCCccHHHHHH
Confidence 34665555 44455544 3688999999999997443
Done!