BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004911
(724 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 52/140 (37%), Positives = 73/140 (52%), Gaps = 24/140 (17%)
Query: 30 MLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV-------------- 70
++E A N + + K +LE DP++ D G L Y NG K++V
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
S+ RTPL AA G +++KL LL AD N SD T LH AA G ++V+LL
Sbjct: 68 SDGRTPLHYAAENGHKEIVKL-LLSKGADPNAK-DSDGRTPLHYAAENGHK---EIVKLL 122
Query: 131 LSAGADPDCVDANGHHPIDV 150
LS GADP+ D++G P+D+
Sbjct: 123 LSKGADPNTSDSDGRTPLDL 142
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 19/94 (20%)
Query: 18 NSTAETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV-- 70
+ A+ D T + A N E K +L + DP++ D G L Y NG K++V
Sbjct: 62 DPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKL 121
Query: 71 ------------SEHRTPLMVAATYGSVDVLKLI 92
S+ RTPL +A +G+ +++KL+
Sbjct: 122 LLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
RTPL +AA G ++V+KL LL + ADVN + RT LH AA G ++VV+LLL A
Sbjct: 3 RTPLHLAARNGHLEVVKL-LLEAGADVNAKDKNGRT-PLHLAARNGH---LEVVKLLLEA 57
Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
GAD + D NG P+ + L+ ++ +LE
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
RTPL +AA G ++V+KL LL + ADVN + RT LH AA G ++VV+LLL A
Sbjct: 36 RTPLHLAARNGHLEVVKL-LLEAGADVNAKDKNGRT-PLHLAARNGH---LEVVKLLLEA 90
Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
GAD + D NG P+ + L+ ++ +LE
Sbjct: 91 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 59.7 bits (143), Expect = 6e-09, Method: Composition-based stats.
Identities = 39/92 (42%), Positives = 55/92 (59%), Gaps = 5/92 (5%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
RTPL +AA G ++V+KL LL + ADVN + RT LH AA G ++VV+LLL A
Sbjct: 3 RTPLHLAARNGHLEVVKL-LLEAGADVNAKDKNGRT-PLHLAARNGH---LEVVKLLLEA 57
Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
GAD + D NG P+ + L+ ++ +LE
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 72/140 (51%), Gaps = 24/140 (17%)
Query: 30 MLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV-------------- 70
++E A N + + K +LE D ++ D G L NG K++V
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKD 67
Query: 71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
S+ +TPL +AA G +V+KL LL AD N SD T LH AA G +VV+LL
Sbjct: 68 SDGKTPLHLAAENGHKEVVKL-LLSQGADPNAK-DSDGKTPLHLAAENGHK---EVVKLL 122
Query: 131 LSAGADPDCVDANGHHPIDV 150
LS GADP+ D++G P+D+
Sbjct: 123 LSQGADPNTSDSDGRTPLDL 142
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 24/140 (17%)
Query: 30 MLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV-------------- 70
++E A N + + K ++E D ++ D G L Y G K++V
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKD 67
Query: 71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
S+ RTPL AA G +++KL L+ ADVN SD T LH AA G ++V+LL
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKL-LISKGADVNAK-DSDGRTPLHYAAKEGHK---EIVKLL 122
Query: 131 LSAGADPDCVDANGHHPIDV 150
+S GAD + D++G P+D+
Sbjct: 123 ISKGADVNTSDSDGRTPLDL 142
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 72/140 (51%), Gaps = 24/140 (17%)
Query: 30 MLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVNGSKQMV-------------- 70
++E A N + + K ++E D ++ D G L + NG K++V
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130
S+ RTPL AA G +V+KL L+ ADVN SD T LH AA G +VV+LL
Sbjct: 68 SDGRTPLHHAAENGHKEVVKL-LISKGADVNAK-DSDGRTPLHHAAENGHK---EVVKLL 122
Query: 131 LSAGADPDCVDANGHHPIDV 150
+S GAD + D++G P+D+
Sbjct: 123 ISKGADVNTSDSDGRTPLDL 142
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS 85
FT+ +E A V+ K + +R + V L +++ T LM AA G
Sbjct: 125 GFTAFMEAAVYGKVKALKFLYKRGAN----VNLRRKTKEDQERLRKGGATALMDAAEKGH 180
Query: 86 VDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH 145
V+VLK++L ADVN R +H S ++V + LLL GAD + G
Sbjct: 181 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 240
Query: 146 HPIDVIVLPPKLDSMRAILEE 166
P+ + V L ++ +LE+
Sbjct: 241 TPLILAVEKKHLGLVQRLLEQ 261
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
TPL +AA G +V K LL + A VN D+T LHCAA G N+V +LLL
Sbjct: 48 ETPLHMAARAGHTEVAK-YLLQNKAKVNAKAKDDQT-PLHCAARIGHTNMV---KLLLEN 102
Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILEE 166
A+P+ GH P+ + ++++ A+LE+
Sbjct: 103 NANPNLATTAGHTPLHIAAREGHVETVLALLEK 135
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 6/108 (5%)
Query: 69 MVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVR 128
M + TPL VAA YG V V +L LL A N + G + T LH A N +D+V+
Sbjct: 142 MTKKGFTPLHVAAKYGKVRVAEL-LLERDAHPN-AAGKNGLTPLHVAVH---HNNLDIVK 196
Query: 129 LLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVV 176
LLL G P NG+ P+ + +++ R++L + GS N+ V
Sbjct: 197 LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL-QYGGSANAESV 243
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
TPL VA+ YG++ ++K +L H ADVN + LH AA G D+V LLL G
Sbjct: 313 TPLHVASHYGNIKLVKFLLQH-QADVNAKTKLGY-SPLHQAAQQGH---TDIVTLLLKNG 367
Query: 135 ADPDCVDANGHHPIDV 150
A P+ V ++G P+ +
Sbjct: 368 ASPNEVSSDGTTPLAI 383
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
+TPL AA G +++KL LL ++A+ N++ + T LH AA G V+ V LL
Sbjct: 81 QTPLHCAARIGHTNMVKL-LLENNANPNLATTAGH-TPLHIAAREGH---VETVLALLEK 135
Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
A C+ G P+ V K+ +LE
Sbjct: 136 EASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 13/116 (11%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
TPL +AATYG +++++++L H ADVN + +T LH AA G +V+V LL G
Sbjct: 49 TPLHLAATYGHLEIVEVLLKH-GADVN-AIDIXGSTPLHLAALIGHLEIVEV---LLKHG 103
Query: 135 ADPDCVDANGHHPIDVIVLPPKLDSMRAIL--------EEVFGSKNSSVVVASGAE 182
AD + VD G P+ + + L+ + +L ++ FG + + +G E
Sbjct: 104 ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Score = 30.4 bits (67), Expect = 3.9, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL 164
GSD L AA G D VR+L++ GAD + DA+G P+ + L+ + +L
Sbjct: 11 GSDLGKKLLEAARAGQD---DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL 67
Query: 165 EEVFGSKNSSVVVASGAEHNLTVSIG 190
+ G+ +++ + +L IG
Sbjct: 68 KH--GADVNAIDIXGSTPLHLAALIG 91
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 17/118 (14%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRT--TALHCAASGGSANVVDVVRLLLS 132
TPL +AA+ G +++++ +LL + ADVN SD T T LH AA+ G +V+V LL
Sbjct: 49 TPLHLAASNGHLEIVE-VLLKNGADVN---ASDLTGITPLHLAAATGHLEIVEV---LLK 101
Query: 133 AGADPDCVDANGHHPIDVIVLPPKLDSMRAIL--------EEVFGSKNSSVVVASGAE 182
GAD + D +GH P+ + L+ + +L ++ FG + + +G E
Sbjct: 102 HGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 29/140 (20%)
Query: 10 SNTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLER--DPSSVDEVG---LWYGRVN 64
+N D+N A D +T + ASN +E + +L+ D ++ D G L
Sbjct: 35 ANGADVN----ATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAAT 90
Query: 65 GSKQMV--------------SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDR-- 108
G ++V ++ TPL +AA YG +++++++L H ADVN D+
Sbjct: 91 GHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH-GADVN---AQDKFG 146
Query: 109 TTALHCAASGGSANVVDVVR 128
TA + G+ ++ ++++
Sbjct: 147 KTAFDISIDNGNEDLAEILQ 166
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 63/141 (44%), Gaps = 4/141 (2%)
Query: 26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS 85
FT+ +E A V+ K + +R + V L +++ T LM AA G
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGAN----VNLRRKTKEDQERLRKGGATALMDAAEKGH 160
Query: 86 VDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH 145
V+VLK++L ADVN R +H S ++V + LLL GAD + G
Sbjct: 161 VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK 220
Query: 146 HPIDVIVLPPKLDSMRAILEE 166
P+ + V L ++ +LE+
Sbjct: 221 TPLILAVEKKHLGLVQRLLEQ 241
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 13/116 (11%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
TPL +AATYG +++++++L H ADVN + +T LH AA G +V+V LL G
Sbjct: 49 TPLHLAATYGHLEIVEVLLKH-GADVN-AIDIMGSTPLHLAALIGHLEIVEV---LLKHG 103
Query: 135 ADPDCVDANGHHPIDVIVLPPKLDSMRAIL--------EEVFGSKNSSVVVASGAE 182
AD + VD G P+ + + L+ + +L ++ FG + + +G E
Sbjct: 104 ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL 164
GSD L AA G D VR+L++ GAD + DA+G P+ + L+ + +L
Sbjct: 11 GSDLGKKLLEAARAGQD---DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL 67
Query: 165 EEVFGSKNSSVVVASGAEHNLTVSIG 190
+ G+ +++ + +L IG
Sbjct: 68 KH--GADVNAIDIMGSTPLHLAALIG 91
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 49/87 (56%), Gaps = 7/87 (8%)
Query: 64 NGSKQMVSEHR--TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA 121
NG+ S+H TPL +AA +G +++++ +LL + ADVN S T LH AA G
Sbjct: 36 NGADVNASDHVGWTPLHLAAYFGHLEIVE-VLLKNGADVNAD-DSLGVTPLHLAADRGHL 93
Query: 122 NVVDVVRLLLSAGADPDCVDANGHHPI 148
VV+V LL GAD + D NG P+
Sbjct: 94 EVVEV---LLKNGADVNANDHNGFTPL 117
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 16/110 (14%)
Query: 64 NGSKQMVSEHR--TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA 121
NGS V +H TPL A +G + V++L+L H A VN + G + LH AA G
Sbjct: 32 NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTT-GYQNDSPLHDAAKNGH- 88
Query: 122 NVVDVVRLLLSAGADPDCVDANGHHPID---------VIVLPPKLDSMRA 162
VD+V+LLLS GA + V+ G P+D +++LP K +S A
Sbjct: 89 --VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSA 136
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
TPL +AA G +++++ +LL + ADVN D T LH AA G +V+V LL AG
Sbjct: 70 TPLHLAAREGHLEIVE-VLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEV---LLKAG 124
Query: 135 ADPDCVDANGHHPIDVIV 152
AD + D G P D+ +
Sbjct: 125 ADVNAQDKFGKTPFDLAI 142
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
TPL +AA G +++++ +LL + ADVN D T LH AA G +V+V LL AG
Sbjct: 70 TPLHLAAREGHLEIVE-VLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEV---LLKAG 124
Query: 135 ADPDCVDANGHHPIDVIV 152
AD + D G P D+ +
Sbjct: 125 ADVNAQDKFGKTPFDLAI 142
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 72 EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
E TPLM AA +G + V++ LL + AD + G R +AL A S G D+V++LL
Sbjct: 35 EGFTPLMWAAAHGQIAVVEF-LLQNGADPQL-LGKGRESALSLACSKG---YTDIVKMLL 89
Query: 132 SAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
G D + D NG P+ V + ++ +LE
Sbjct: 90 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 123
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 72 EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
E TPLM AA +G + V++ LL + AD + G R +AL A S G D+V++LL
Sbjct: 51 EGFTPLMWAAAHGQIAVVEF-LLQNGADPQL-LGKGRESALSLACSKG---YTDIVKMLL 105
Query: 132 SAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
G D + D NG P+ V + ++ +LE
Sbjct: 106 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 139
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/94 (35%), Positives = 49/94 (52%), Gaps = 5/94 (5%)
Query: 72 EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
E TPLM AA +G + V++ LL + AD + G R +AL A S G D+V++LL
Sbjct: 33 EGFTPLMWAAAHGQIAVVEF-LLQNGADPQL-LGKGRESALSLACSKG---YTDIVKMLL 87
Query: 132 SAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
G D + D NG P+ V + ++ +LE
Sbjct: 88 DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE 121
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 36/99 (36%), Positives = 54/99 (54%), Gaps = 9/99 (9%)
Query: 55 EVGLWYGR-VNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALH 113
EV L +G VN + +M TPL +AA YG +++++ +LL + ADVN + + T LH
Sbjct: 64 EVLLKHGADVNAADKMGD---TPLHLAALYGHLEIVE-VLLKNGADVNAT-DTYGFTPLH 118
Query: 114 CAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIV 152
AA G +V+V LL GAD + D G D+ +
Sbjct: 119 LAADAGHLEIVEV---LLKYGADVNAQDKFGKTAFDISI 154
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 32/176 (18%)
Query: 23 TEDSFTSMLELASNNDVEGFKRMLER----DPSSVD--------------EVGLWYGRVN 64
+ED T ++E A NN +E K +++ DP + EV + Y N
Sbjct: 41 SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEV-VQYLLSN 99
Query: 65 GSKQMVSEHR---TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA 121
G + + TP++ A Y VD++KL LL +D+N+ ++ LH AA G
Sbjct: 100 GQMDVNCQDDGGWTPMIWATEYKHVDLVKL-LLSKGSDINIR-DNEENICLHWAAFSG-- 155
Query: 122 NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVV 177
VD+ +LL+A D V+ +G P+ + + D + +F S++S V +
Sbjct: 156 -CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV-----VLFLSRDSDVTL 205
Score = 37.4 bits (85), Expect = 0.033, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
R+PL AA G VD+ + L+ + A+++ +C D+ T L AA N ++ V+ L+ A
Sbjct: 12 RSPLHAAAEAGHVDICHM-LVQAGANID-TCSEDQRTPLMEAAEN---NHLEAVKYLIKA 66
Query: 134 GADPDCVDANG 144
GA D DA G
Sbjct: 67 GALVDPKDAEG 77
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 76 PLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGA 135
PL A +YG +V +L++ H + VNV+ + T LH AA+ G ++ +LLL GA
Sbjct: 82 PLHNACSYGHYEVAELLVKHGAV-VNVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGA 136
Query: 136 DPDCVDANGHHPIDVI 151
DP + +G+ P+D++
Sbjct: 137 DPTKKNRDGNTPLDLV 152
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 76 PLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGA 135
PL A +YG +V +L++ H + VNV+ + T LH AA+ G ++ +LLL GA
Sbjct: 78 PLHNACSYGHYEVAELLVKHGAV-VNVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGA 132
Query: 136 DPDCVDANGHHPIDVI 151
DP + +G+ P+D++
Sbjct: 133 DPTKKNRDGNTPLDLV 148
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 76 PLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGA 135
PL A +YG +V +L++ H + VNV+ + T LH AA+ G ++ +LLL GA
Sbjct: 80 PLHNACSYGHYEVAELLVKHGAV-VNVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGA 134
Query: 136 DPDCVDANGHHPIDVI 151
DP + +G+ P+D++
Sbjct: 135 DPTKKNRDGNTPLDLV 150
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 13/116 (11%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
TPL +AA G +++++ +LL + ADVN + T L AA G +V+V LL G
Sbjct: 49 TPLHLAAFNGHLEIVE-VLLKNGADVN-AVDHAGMTPLRLAALFGHLEIVEV---LLKNG 103
Query: 135 ADPDCVDANGHHPIDVIVLPPKLDSMRAIL--------EEVFGSKNSSVVVASGAE 182
AD + D GH P+ + + L+ + +L ++ FG + + +G E
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL 164
GSD L AA G D VR+L++ GAD + DA+G P+ + L+ + +L
Sbjct: 11 GSDLGKKLLEAARAGRD---DEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL 67
Query: 165 E 165
+
Sbjct: 68 K 68
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 9/87 (10%)
Query: 61 GRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGS 120
G + GSK + TPL AA G + +K LL ADVN D T LH AA G
Sbjct: 1 GHMWGSK----DGNTPLHNAAKNGHAEEVKK-LLSKGADVNAR-SKDGNTPLHLAAKNGH 54
Query: 121 ANVVDVVRLLLSAGADPDCVDANGHHP 147
A ++V+LLL+ GAD + +G+ P
Sbjct: 55 A---EIVKLLLAKGADVNARSKDGNTP 78
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
PL A +YG +V +L+L H + VN + + T LH AAS N V+V LLLS G
Sbjct: 93 VPLHNACSYGHYEVTELLLKHGAC-VN-AMDLWQFTPLHEAAS---KNRVEVCSLLLSHG 147
Query: 135 ADPDCVDANGHHPIDVIVLP 154
ADP V+ +G +D+ P
Sbjct: 148 ADPTLVNCHGKSAVDMAPTP 167
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
TPL VAA DV++++ H A +N + S TALH AA G + RLLLS G
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHG-AKMN-ALDSLGQTALHRAALAGH---LQTCRLLLSYG 303
Query: 135 ADPDCVDANG 144
+DP + G
Sbjct: 304 SDPSIISLQG 313
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSC-GSD--RTTALHCAASGGSANVVDVVRLL 130
+ L+ AA G+ + L +L +NV+C SD ++T LH AA N V +V+LL
Sbjct: 25 KDELLEAARSGNEEKLMALL----TPLNVNCHASDGRKSTPLHLAAG---YNRVRIVQLL 77
Query: 131 LSAGADPDCVDANGHHPI 148
L GAD D G P+
Sbjct: 78 LQHGADVHAKDKGGLVPL 95
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 39.3 bits (90), Expect = 0.008, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
TPL+ A+ +G ++ ++ LL AD ++ +R +AL A++GG D+V LLL
Sbjct: 38 TPLIWASAFGEIETVRF-LLEWGADPHI-LAKERESALSLASTGG---YTDIVGLLLERD 92
Query: 135 ADPDCVDANGHHPI 148
D + D NG P+
Sbjct: 93 VDINIYDWNGGTPL 106
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 69 MVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVR 128
+ E + L +A+T G D++ L LL D+N+ + T L+ N V V
Sbjct: 65 LAKERESALSLASTGGYTDIVGL-LLERDVDINIYDWNGGTPLLYAV----RGNHVKCVE 119
Query: 129 LLLSAGADPDCVDANGHHPIDVIV 152
LL+ GAD +G+ P+D+ V
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAV 143
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 77 LMVAATYGSVDVLKLILLHSSADVNVSCGSDRT--TALHCAASGGSANVVDVVRLLLSAG 134
L+ AA G D ++ IL+ + ADVN D+ T LH AA +V+V LL G
Sbjct: 18 LLEAARAGQDDEVR-ILMANGADVN---AEDKVGLTPLHLAAMNDHLEIVEV---LLKNG 70
Query: 135 ADPDCVDANGHHPIDVIVLPPKLDSMRAIL--------EEVFGSKNSSVVVASGAE 182
AD + +DA G P+ ++ + L+ + +L ++ FG + + +G E
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Score = 31.2 bits (69), Expect = 2.4, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 59/122 (48%), Gaps = 26/122 (21%)
Query: 15 MNNNSTAETEDSF-TSMLELASNND-VEGFKRMLER--DPSSVDEVGLWYGRVNGSKQMV 70
M N + ED + L LA+ ND +E + +L+ D +++D +G
Sbjct: 34 MANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIG------------- 80
Query: 71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDR--TTALHCAASGGSANVVDVVR 128
TPL + A YG +++++++L H ADVN D+ TA + G+ ++ ++++
Sbjct: 81 ---ETPLHLVAMYGHLEIVEVLLKH-GADVN---AQDKFGKTAFDISIDNGNEDLAEILQ 133
Query: 129 LL 130
L
Sbjct: 134 KL 135
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
+PL +AA YG + +LL + + DRT LH AAS G AN+V+V LL G
Sbjct: 36 SPLHLAAQYGHFSTTE-VLLRAGVSRDARTKVDRT-PLHMAASEGHANIVEV---LLKHG 90
Query: 135 ADPDCVD 141
AD + D
Sbjct: 91 ADVNAKD 97
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 38.5 bits (88), Expect = 0.015, Method: Composition-based stats.
Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 77 LMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD 136
L+ AA G D ++ IL+ + AD N RT LH AA+ G +V+V LL GAD
Sbjct: 6 LLEAARAGQDDEVR-ILMANGADANAYDHYGRT-PLHMAAAVGHLEIVEV---LLRNGAD 60
Query: 137 PDCVDANGHHPI 148
+ VD NG P+
Sbjct: 61 VNAVDTNGTTPL 72
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 38.1 bits (87), Expect = 0.016, Method: Composition-based stats.
Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 75 TPLMVAA-TYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
TPLM AA SVD +L LL + VN+ + TALH A G+ V+ LLL A
Sbjct: 144 TPLMWAAYRTHSVDPTRL-LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS---LLLEA 199
Query: 134 GADPDCVDANGHHPIDV 150
GA+ D + G +D+
Sbjct: 200 GANVDAQNIKGESALDL 216
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 38.1 bits (87), Expect = 0.019, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 61 GRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGS 120
G V M S+ L+ AA G D ++ IL+ + ADV + +T LH AA G
Sbjct: 12 GLVPRGSHMGSDLGKKLLEAARAGQDDEVR-ILMANGADVAAK-DKNGSTPLHLAARNGH 69
Query: 121 ANVVDVVRLLLSAGADPDCVDANGHHPIDVIV 152
++VV+LLL AGAD D G D+ +
Sbjct: 70 ---LEVVKLLLEAGADVXAQDKFGKTAFDISI 98
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL 164
GSD L AA G D VR+L++ GAD D NG P+ + L+ ++ +L
Sbjct: 21 GSDLGKKLLEAARAGQD---DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
Query: 165 E 165
E
Sbjct: 78 E 78
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 37.7 bits (86), Expect = 0.021, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 68 QMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVV 127
M S+ L+ AA G D ++ IL+ + ADV + +T LH AA G ++VV
Sbjct: 1 HMGSDLGKKLLEAARAGQDDEVR-ILMANGADVAAK-DKNGSTPLHLAARNGH---LEVV 55
Query: 128 RLLLSAGADPDCVDANGHHPIDVIV 152
+LLL AGAD + D G D+ +
Sbjct: 56 KLLLEAGADVNAQDKFGKTAFDISI 80
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL 164
GSD L AA G D VR+L++ GAD D NG P+ + L+ ++ +L
Sbjct: 3 GSDLGKKLLEAARAGQD---DEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 59
Query: 165 E 165
E
Sbjct: 60 E 60
>pdb|1D9S|A Chain A, Tumor Suppressor P15(Ink4b) Structure By Comparative
Modeling And Nmr Data
Length = 136
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 23/119 (19%)
Query: 34 ASNNDVEGFKRMLER--DPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL 91
A+ VE +++LE DP++++ G R P+ V GS V +L
Sbjct: 20 AARGQVETVRQLLEAGADPNALNRFG----------------RRPIQVMMM-GSAQVAEL 62
Query: 92 ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDV 150
+LLH A+ N + + T +H AA G +D + +L AGA D DA G P+D+
Sbjct: 63 LLLHG-AEPNCADPATLTRPVHDAAREG---FLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL 153
G L AA+ G V+ VR LL AGADP+ ++ G PI V+++
Sbjct: 9 GGSSDAGLATAAARGQ---VETVRQLLEAGADPNALNRFGRRPIQVMMM 54
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 37.0 bits (84), Expect = 0.039, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 21/135 (15%)
Query: 36 NNDVEGFKRMLERDP-----SSVDEVGLWYGRVNGSKQMVS---EHRTP----------- 76
NND+E K +++R +S+ + Y G ++++ +H TP
Sbjct: 49 NNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGN 108
Query: 77 -LMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAA-SGGSANVVDVVRLLLSAG 134
L+ AA G +D +KL+L D++ T + G+ D+V+LL+ G
Sbjct: 109 ALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENG 168
Query: 135 ADPDCVDANGHHPID 149
AD D +G +D
Sbjct: 169 ADQSIKDNSGRTAMD 183
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 14/90 (15%)
Query: 29 SMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDV 88
++LE A+ D + K +L+ VDEV +E TPL +A +++
Sbjct: 8 ALLEAANQRDTKKVKEILQDTTYQVDEVD-------------TEGNTPLNIAVHNNDIEI 54
Query: 89 LKLILLHSSADVNVSCGSDRTTALHCAASG 118
K L+ AD+N+ + L+ A G
Sbjct: 55 AK-ALIDRGADINLQNSISDSPYLYAGAQG 83
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNV---SCGSDRTTALHCAASGGSANVVDVVRLLL 131
TPL VA + ++++L L + AD+N +CG T LH A +A+V++ LLL
Sbjct: 160 TPLHVAVIHKDAEMVRL-LRDAGADLNKPEPTCGR---TPLHLAVEAQAASVLE---LLL 212
Query: 132 SAGADPDCVDANGHHPIDVIVLPP 155
AGADP G P+ +L P
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRP 236
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNV---SCGSDRTTALHCAASGGSANVVDVVRLLL 131
TPL VA + ++++L L + AD+N +CG T LH A +A+V++ LLL
Sbjct: 160 TPLHVAVIHKDAEMVRL-LRDAGADLNKPEPTCGR---TPLHLAVEAQAASVLE---LLL 212
Query: 132 SAGADPDCVDANGHHPIDVIVLPP 155
AGADP G P+ +L P
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRP 236
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
+PL +AA+ G +++K LL A VN + + T LH AAS N ++ +LL G
Sbjct: 76 SPLHIAASAGRDEIVK-ALLGKGAQVN-AVNQNGCTPLHYAAS---KNRHEIAVMLLEGG 130
Query: 135 ADPDCVD 141
A+PD D
Sbjct: 131 ANPDAKD 137
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 72 EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTA----LHCAASGGSANVVDVV 127
+ RT L A + G ++++ LL VN D+ A LH AAS G ++V
Sbjct: 40 DSRTALHWACSAGHTEIVEF-LLQLGVPVN-----DKDDAGWSPLHIAASAGRD---EIV 90
Query: 128 RLLLSAGADPDCVDANGHHPI 148
+ LL GA + V+ NG P+
Sbjct: 91 KALLGKGAQVNAVNQNGCTPL 111
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
+PL +AA+ G +++K LL A VN + + T LH AAS N ++ +LL G
Sbjct: 75 SPLHIAASAGRDEIVK-ALLGKGAQVN-AVNQNGCTPLHYAAS---KNRHEIAVMLLEGG 129
Query: 135 ADPDCVD 141
A+PD D
Sbjct: 130 ANPDAKD 136
Score = 30.0 bits (66), Expect = 5.2, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 72 EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTA----LHCAASGGSANVVDVV 127
+ RT L A + G ++++ LL VN D+ A LH AAS G ++V
Sbjct: 39 DSRTALHWACSAGHTEIVEF-LLQLGVPVN-----DKDDAGWSPLHIAASAGRD---EIV 89
Query: 128 RLLLSAGADPDCVDANGHHPI 148
+ LL GA + V+ NG P+
Sbjct: 90 KALLGKGAQVNAVNQNGCTPL 110
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 77 LMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD 136
L+ A G D ++ IL+ + ADVN + T LH AA G +V+V LL GAD
Sbjct: 18 LLEATRAGQDDEVR-ILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEV---LLKHGAD 72
Query: 137 PDCVDANGHHPIDVIVLPPKLDSMRAILE 165
+ D+ G P+ + L+ + +LE
Sbjct: 73 VNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDR--TTALHCAASGGSANVVDVVRLL 130
RTPL +AAT G +++++ +LL ADVN D+ TA + G+ ++ ++++ L
Sbjct: 81 RTPLHLAATVGHLEIVE-VLLEYGADVN---AQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
+PL +AA+ G +++K +L+ A VN + + T LH AAS N ++ +LL G
Sbjct: 75 SPLHIAASAGXDEIVKALLV-KGAHVN-AVNQNGCTPLHYAAS---KNRHEIAVMLLEGG 129
Query: 135 ADPDCVD 141
A+PD D
Sbjct: 130 ANPDAKD 136
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
T L VAA G +VLKL L+ + DVN+ D T LH AA G + R+L+
Sbjct: 201 TALHVAAAKGYTEVLKL-LIQARYDVNIK-DYDGWTPLHAAAHWGKE---EACRILVENL 255
Query: 135 ADPDCVDANGHHPIDV 150
D + V+ G DV
Sbjct: 256 CDMEAVNKVGQTAFDV 271
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 5/67 (7%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
+PL +AA+ G +++K +L+ A VN + + T LH AAS N ++ +LL G
Sbjct: 75 SPLHIAASAGRDEIVKALLV-KGAHVN-AVNQNGCTPLHYAAS---KNRHEIAVMLLEGG 129
Query: 135 ADPDCVD 141
A+PD D
Sbjct: 130 ANPDAKD 136
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 53 VDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTAL 112
+DEV + + + + R PL AA G +++L+ +LL AD+N T L
Sbjct: 20 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLL 78
Query: 113 HCAASGGSANVVDVVRLLLSAGAD 136
G V V+LLLS GAD
Sbjct: 79 SAVYEGH----VSCVKLLLSKGAD 98
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 53 VDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTAL 112
+DEV + + + + R PL AA G +++L+ +LL AD+N T L
Sbjct: 15 LDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL-KGADINAPDKHHITPLL 73
Query: 113 HCAASGGSANVVDVVRLLLSAGAD 136
G V V+LLLS GAD
Sbjct: 74 SAVYEGH----VSCVKLLLSKGAD 93
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 77 LMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD 136
L+ AA G D ++ IL+ + ADVN T L+ A + G +V+V LL GAD
Sbjct: 18 LLEAARAGQDDEVR-ILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEV---LLKNGAD 72
Query: 137 PDCVDANGHHPIDVIVLPPKLDSMRAIL--------EEVFGSKNSSVVVASGAE 182
+ VDA G P+ + L+ +L ++ FG + + +G E
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSC-GSDRTTALHCAASGGSANVVDVVRLLLSA 133
+PL VAA +G D++ L+L H + N +D+ LH A G VV+ LL +
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGA---NAGARNADQAVPLHLACQQGH---FQVVKCLLDS 141
Query: 134 GADPDCVDANGHHPI 148
A P+ D +G+ P+
Sbjct: 142 NAKPNKKDLSGNTPL 156
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 34.3 bits (77), Expect = 0.28, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 77 LMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD 136
L+ A G D ++ IL+ + ADVN + T LH AA G +V+V LL GAD
Sbjct: 18 LLEATRAGQDDEVR-ILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEV---LLKHGAD 72
Query: 137 PDCVDANGHHPIDVIVLPPKLDSMRAILE 165
+ D G P+ + L+ + +LE
Sbjct: 73 VNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDR--TTALHCAASGGSANVVDVVRLL 130
RTPL +AAT G +++++ +LL ADVN D+ TA + G+ ++ ++++ L
Sbjct: 81 RTPLHLAATVGHLEIVE-VLLEYGADVN---AQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
T L +A+ +G + +++L L+ ADVN + TALH A + D+V LLL G
Sbjct: 116 TCLHLASIHGYLGIVEL-LVSLGADVNAQEPCNGRTALHLAVDLQNP---DLVSLLLKCG 171
Query: 135 ADPDCVDANGHHP 147
AD + V G+ P
Sbjct: 172 ADVNRVTYQGYSP 184
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.9 bits (76), Expect = 0.36, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 77 LMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD 136
L+ A G D ++ IL+ + ADVN + T LH AA G +V+V LL GAD
Sbjct: 18 LLEATRAGQDDEVR-ILMANGADVN-AMDDAGVTPLHLAAKRGHLEIVEV---LLKHGAD 72
Query: 137 PDCVDANGHHPIDVIVLPPKLDSMRAILE 165
+ D G P+ + L+ + +LE
Sbjct: 73 VNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDR--TTALHCAASGGSANVVDVVRLL 130
RTPL +AAT G +++++ +LL ADVN D+ TA + G+ ++ ++++ L
Sbjct: 81 RTPLHLAATVGHLEIVE-VLLEYGADVN---AQDKFGKTAFDISIDNGNEDLAEILQKL 135
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 75 TPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG 134
T L +A+ +G + +++L L+ ADVN + TALH A + D+V LLL G
Sbjct: 119 TCLHLASIHGYLGIVEL-LVSLGADVNAQEPCNGRTALHLAVDLQNP---DLVSLLLKCG 174
Query: 135 ADPDCVDANGHHP 147
AD + V G+ P
Sbjct: 175 ADVNRVTYQGYSP 187
>pdb|1RGO|A Chain A, Structural Basis For Recognition Of The Mrna Class Ii Au-
Rich Element By The Tandem Zinc Finger Domain Of Tis11d
Length = 70
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 297 YSCVPCPDFRK-GACRRGDMCEYAHGVFE---CWLHPAQYRTRLCKD----GTSCDRRVC 348
Y C F + G C+ G+ C++AHG E HP +Y+T LC+ G C
Sbjct: 4 YKTELCRPFEESGTCKYGEKCQFAHGFHELRSLTRHP-KYKTELCRTFHTIGFCPYGPRC 62
Query: 349 FFAHTAEE 356
F H A+E
Sbjct: 63 HFIHNADE 70
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 69 MVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVR 128
+ E + L +A+T G D++ L LL D+N+ + T L+ N V V
Sbjct: 65 LAKERESALSLASTGGYTDIVGL-LLERDVDINIYDWNGGTPLLYAV----HGNHVKCVE 119
Query: 129 LLLSAGADPDCVDANGHHPIDVIV 152
LL+ GAD +G+ P+D+ V
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAV 143
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 32.3 bits (72), Expect = 0.87, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
R P+ V GS V +L+LLH A+ N + + T +H AA G +D + +L A
Sbjct: 46 RRPIQVMMM-GSARVAELLLLHG-AEPNCADPATLTRPVHDAAREG---FLDTLVVLHRA 100
Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE 182
GA D DA G P+D+ D R + G++ S+ AE
Sbjct: 101 GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 103 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL 153
+ GS + A+ + V+ VR LL AGA P+ ++ G PI V+++
Sbjct: 4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGALPNAPNSYGRRPIQVMMM 54
>pdb|1BI7|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structure Of The Cdk6-P16ink4a Tumor Suppressor
Complex
Length = 156
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 74 RTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA 133
R P+ V GS V +L+LLH A+ N + + T +H AA G +D + +L A
Sbjct: 46 RRPIQVMMM-GSARVAELLLLHG-AEPNCADPATLTRPVHDAAREG---FLDTLVVLHRA 100
Query: 134 GADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE 182
GA D DA G P+D+ D R + G++ S+ AE
Sbjct: 101 GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 103 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL 153
+ GS + A+ + V+ VR LL AGA+P+ ++ G PI V+++
Sbjct: 4 AAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM 54
>pdb|4II1|A Chain A, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|B Chain B, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|C Chain C, Crystal Structure Of The Zinc Finger Of Zgpat
pdb|4II1|D Chain D, Crystal Structure Of The Zinc Finger Of Zgpat
Length = 167
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 296 HYSCVPCPDFRKGACRRGDMCEYAHG 321
H S PCP F +G CR + C ++HG
Sbjct: 73 HKSLKPCPFFLEGKCRFKENCRFSHG 98
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 66 SKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVD 125
+ +VSE+ TP AA L +L DV+ + RT L A G
Sbjct: 37 AADVVSEYETPWWTAARKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSD----K 90
Query: 126 VVRLLLSAGADPDCVDANG 144
VRLL AGAD D D G
Sbjct: 91 CVRLLAEAGADLDHRDMRG 109
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 72 EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
E T L A G +++K L+ +VN + SD T LHCAA S N V V + L+
Sbjct: 69 EGITALHNAVCAGHTEIVKF-LVQFGVNVNAA-DSDGWTPLHCAA---SCNNVQVCKFLV 123
Query: 132 SAGA 135
+GA
Sbjct: 124 ESGA 127
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 72 EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131
E T L A G +++K L+ +VN + SD T LHCAA S N V V + L+
Sbjct: 69 EGITALHNAVCAGHTEIVKF-LVQFGVNVNAA-DSDGWTPLHCAA---SCNNVQVCKFLV 123
Query: 132 SAGA 135
+GA
Sbjct: 124 ESGA 127
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRL 129
+S TPL +A +K LL S ADVN G D + LH A S ++ L
Sbjct: 131 ISHLGTPLYLACENQQRACVK-KLLESGADVNQGKGQD--SPLHAVARTASE---ELACL 184
Query: 130 LLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
L+ GAD +A G P++++ PP+ + LE
Sbjct: 185 LMDFGADTQAKNAEGKRPVELV--PPESPLAQLFLE 218
>pdb|2CQE|A Chain A, Solution Structure Of The Zinc-Finger Domain In Kiaa1064
Protein
Length = 98
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 19/79 (24%)
Query: 284 GENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSC 343
GE ++R+ KF+ + G C R + C Y HG F C L+ + T C +G
Sbjct: 7 GELPKKRELCKFYIT---------GFCARAENCPYMHGDFPCKLY---HTTGNCINGDD- 53
Query: 344 DRRVCFFAHT--AEELRPL 360
C F+H EE R L
Sbjct: 54 ----CMFSHDPLTEETREL 68
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 32/76 (42%), Gaps = 6/76 (7%)
Query: 69 MVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVR 128
+VSE+ TP AA L +L DV+ + RT L A G VR
Sbjct: 41 VVSEYETPWWTAARKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDK----CVR 94
Query: 129 LLLSAGADPDCVDANG 144
LL AGAD D D G
Sbjct: 95 LLAEAGADLDHRDMRG 110
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 30.4 bits (67), Expect = 3.7, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL 164
GSD L AA G D VR+L++ GAD + VD G P+ + + L+ + +L
Sbjct: 11 GSDLGKKLLEAARAGQD---DEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLL 67
Query: 165 E 165
+
Sbjct: 68 K 68
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL 164
GSD L AA G D VR+L + GAD + D GH P+ + + L+ + +L
Sbjct: 11 GSDLGKKLLEAARAGQD---DEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLL 67
Query: 165 EEVFGSKNSSVVVASG 180
KN + V A+G
Sbjct: 68 ------KNGADVNATG 77
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL 164
GSD L AA G D VR+L++ GAD + D GH P+ + L+ + +L
Sbjct: 11 GSDLGKKLLEAARAGQD---DEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLL 67
Query: 165 E 165
+
Sbjct: 68 K 68
>pdb|2RHK|C Chain C, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
pdb|2RHK|D Chain D, Crystal Structure Of Influenza A Ns1a Protein In Complex
With F2f3 Fragment Of Human Cellular Factor Cpsf30,
Northeast Structural Genomics Targets Or8c And Hr6309a
Length = 72
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 14/62 (22%)
Query: 300 VPCPDFRKGACRRGDMCEYAH-----GVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHTA 354
V C + +G C++GD CE+ H + EC+ + K G C + C F H
Sbjct: 17 VVCKHWLRGLCKKGDQCEFLHEYDMTKMSECYFYS--------KFG-ECSNKECPFLHID 67
Query: 355 EE 356
E
Sbjct: 68 PE 69
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 9/75 (12%)
Query: 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAIL 164
G D L AA+ G D VR+L++ GAD + D NG P+ + +L+ + +L
Sbjct: 3 GQDLGKKLLEAAAAGQD---DEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL 59
Query: 165 EEVFGSKNSSVVVAS 179
KN + V AS
Sbjct: 60 ------KNGADVNAS 68
>pdb|1M9O|A Chain A, Nmr Structure Of The First Zinc Binding Domain Of
Nup475TTPTIS11
Length = 77
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 308 GACRRGDMCEYAHGVFECWL---HPAQYRTRLC 337
G CR G C++AHG+ E HP +Y+T LC
Sbjct: 22 GRCRYGAKCQFAHGLGELRQANRHP-KYKTELC 53
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 8/96 (8%)
Query: 70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRL 129
+S TPL +A +K LL S ADVN G D + LH S ++ L
Sbjct: 187 ISHLGTPLYLACENQQRACVK-KLLESGADVNQGKGQD--SPLHAVVRTASE---ELACL 240
Query: 130 LLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165
L+ GAD +A G P++++ PP+ + LE
Sbjct: 241 LMDFGADTQAKNAEGKRPVELV--PPESPLAQLFLE 274
>pdb|2E5S|A Chain A, Solution Structure Of The Zf-Ccchx2 Domain Of Muscleblind-
Like 2, Isoform 1 [homo Sapiens]
Length = 98
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 302 CPDFRKGACRRGDM-CEYAHGVFECWLHPAQYRTRLCKD--GTSCDRRVCFFAHTAEELR 358
C +F++G C RG+ C +AH + + +C D C R C + H L+
Sbjct: 23 CREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQ 82
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.3 bits (64), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 106 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID 149
S+ T L+ AA G+ ++VD LL GADP + +G P+D
Sbjct: 281 SNGDTCLNIAARLGNISIVDA---LLDYGADPFIANKSGLRPVD 321
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,804,047
Number of Sequences: 62578
Number of extensions: 682653
Number of successful extensions: 1704
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 1573
Number of HSP's gapped (non-prelim): 144
length of query: 724
length of database: 14,973,337
effective HSP length: 106
effective length of query: 618
effective length of database: 8,340,069
effective search space: 5154162642
effective search space used: 5154162642
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)