Query 004911
Match_columns 724
No_of_seqs 588 out of 2830
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 09:32:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/004911.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/004911hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oy3_D Transcription factor in 100.0 1.6E-32 5.5E-37 282.7 12.5 209 19-265 2-265 (282)
2 3b7b_A Euchromatic histone-lys 100.0 1.6E-31 5.5E-36 269.4 14.7 211 17-265 2-217 (237)
3 1yyh_A HN1;, notch 1, ankyrin 100.0 2.4E-32 8.2E-37 280.4 7.1 211 18-265 2-230 (253)
4 1k1a_A B-cell lymphoma 3-encod 100.0 2.3E-31 8E-36 268.1 12.7 210 19-265 2-223 (241)
5 2xai_A ASB-9, ankyrin repeat a 100.0 3.7E-31 1.3E-35 273.1 12.3 202 25-266 2-207 (261)
6 3utm_A Tankyrase-1; tankyrase, 100.0 9.7E-31 3.3E-35 277.0 14.9 213 15-265 47-320 (351)
7 3d9h_A CDNA FLJ77766, highly s 100.0 7.7E-31 2.6E-35 275.0 13.8 212 16-266 49-263 (285)
8 3aji_A 26S proteasome non-ATPa 100.0 1.5E-30 5.2E-35 261.2 11.9 205 24-265 4-212 (231)
9 2f8y_A Notch homolog 1, transl 100.0 5.2E-30 1.8E-34 256.0 15.0 204 11-251 9-217 (223)
10 1s70_B 130 kDa myosin-binding 100.0 1.1E-30 3.8E-35 272.4 10.5 222 22-265 36-272 (299)
11 2dzn_A Probable 26S proteasome 100.0 3.2E-30 1.1E-34 258.0 12.5 204 26-265 2-215 (228)
12 4g8k_A 2-5A-dependent ribonucl 100.0 4E-30 1.4E-34 274.2 13.2 224 12-255 44-303 (337)
13 2rfa_A Transient receptor pote 100.0 2.8E-30 9.6E-35 259.9 10.8 192 25-253 2-225 (232)
14 2xai_A ASB-9, ankyrin repeat a 100.0 1.1E-29 3.8E-34 262.0 15.4 211 13-265 23-245 (261)
15 1k1a_A B-cell lymphoma 3-encod 100.0 1.7E-29 5.9E-34 254.4 16.4 197 15-249 35-240 (241)
16 1wdy_A 2-5A-dependent ribonucl 100.0 8.9E-30 3.1E-34 261.2 14.5 215 14-265 26-260 (285)
17 3ljn_A Hypothetical protein; a 100.0 1.2E-30 4E-35 281.3 8.1 210 16-265 10-251 (364)
18 3aji_A 26S proteasome non-ATPa 100.0 3.5E-30 1.2E-34 258.6 10.9 194 19-250 33-230 (231)
19 3kea_A K1L; tropism, ANK repea 100.0 1.2E-30 4E-35 273.9 7.2 198 17-256 22-226 (285)
20 4b93_B Ankyrin repeat domain-c 100.0 2E-30 6.7E-35 271.0 8.8 215 21-265 6-225 (269)
21 4gpm_A Engineered protein OR26 100.0 5.6E-29 1.9E-33 242.9 18.4 157 28-222 6-162 (169)
22 1wdy_A 2-5A-dependent ribonucl 100.0 1.5E-29 5E-34 259.6 14.0 211 12-255 58-283 (285)
23 1ikn_D Protein (I-kappa-B-alph 100.0 1.8E-30 6.1E-35 262.7 6.6 209 20-265 2-226 (236)
24 4b93_B Ankyrin repeat domain-c 100.0 2.1E-29 7E-34 263.3 14.8 211 17-265 43-262 (269)
25 1yyh_A HN1;, notch 1, ankyrin 100.0 1.3E-29 4.3E-34 260.1 12.4 196 14-247 44-245 (253)
26 1n11_A Ankyrin; clathrin, BAND 100.0 1.1E-29 3.6E-34 280.2 11.7 212 16-265 4-219 (437)
27 3hra_A Ankyrin repeat family p 100.0 3.6E-29 1.2E-33 245.8 13.7 189 24-248 3-201 (201)
28 2fo1_E LIN-12 protein; beta-ba 100.0 3.5E-30 1.2E-34 280.4 7.0 221 16-265 114-353 (373)
29 1n11_A Ankyrin; clathrin, BAND 100.0 2.9E-29 1E-33 276.7 14.2 233 14-265 134-384 (437)
30 3ljn_A Hypothetical protein; a 100.0 1.1E-29 3.9E-34 273.5 10.1 208 12-253 39-272 (364)
31 4g8k_A 2-5A-dependent ribonucl 100.0 5.8E-29 2E-33 265.2 13.4 216 14-253 113-329 (337)
32 3utm_A Tankyrase-1; tankyrase, 100.0 6.4E-29 2.2E-33 263.0 13.5 225 19-265 17-287 (351)
33 3b7b_A Euchromatic histone-lys 100.0 5.3E-28 1.8E-32 243.6 19.1 189 13-238 31-223 (237)
34 3eu9_A Huntingtin-interacting 100.0 7.8E-29 2.7E-33 248.2 12.7 210 19-265 2-217 (240)
35 2dzn_A Probable 26S proteasome 100.0 7.7E-28 2.6E-32 240.6 19.3 182 19-236 29-219 (228)
36 2fo1_E LIN-12 protein; beta-ba 100.0 6.1E-29 2.1E-33 270.6 12.0 203 14-250 154-371 (373)
37 1oy3_D Transcription factor in 100.0 2.5E-28 8.6E-33 251.3 15.6 181 19-237 38-270 (282)
38 2rfa_A Transient receptor pote 100.0 4.1E-28 1.4E-32 244.0 16.5 184 15-221 26-222 (232)
39 3d9h_A CDNA FLJ77766, highly s 100.0 1.5E-28 5.1E-33 257.6 13.6 197 13-251 79-280 (285)
40 2pnn_A Transient receptor pote 99.9 3.2E-29 1.1E-33 259.3 5.3 208 17-254 4-263 (273)
41 2etb_A Transient receptor pote 99.9 3.8E-29 1.3E-33 256.0 5.2 197 26-252 2-248 (256)
42 3eu9_A Huntingtin-interacting 99.9 5.8E-28 2E-32 241.8 11.8 203 12-251 28-236 (240)
43 1ikn_D Protein (I-kappa-B-alph 99.9 4.3E-27 1.5E-31 237.8 17.5 181 17-235 36-229 (236)
44 1sw6_A Regulatory protein SWI6 99.9 1.9E-27 6.5E-32 254.5 13.8 178 14-236 118-327 (327)
45 2vge_A RELA-associated inhibit 99.9 5.4E-28 1.9E-32 246.5 9.0 187 20-244 15-207 (229)
46 2rfm_A Putative ankyrin repeat 99.9 2.1E-27 7.2E-32 232.9 12.6 162 19-218 28-189 (192)
47 3hra_A Ankyrin repeat family p 99.9 1.2E-26 4.3E-31 227.7 17.6 169 14-219 27-201 (201)
48 1ihb_A P18-INK4C(INK6), cyclin 99.9 7.3E-27 2.5E-31 221.9 14.8 159 24-220 3-161 (162)
49 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.8E-26 6E-31 222.3 16.9 160 22-219 10-169 (169)
50 3twr_A Tankyrase-2; ankyrin re 99.9 1.3E-26 4.5E-31 221.4 15.3 161 22-220 4-164 (165)
51 1s70_B 130 kDa myosin-binding 99.9 6.3E-27 2.1E-31 244.0 13.6 183 14-234 61-274 (299)
52 3v30_A DNA-binding protein rfx 99.9 1.8E-26 6.3E-31 221.9 15.3 157 26-219 2-158 (172)
53 3jxi_A Vanilloid receptor-rela 99.9 4.4E-28 1.5E-32 248.4 4.1 199 23-251 2-251 (260)
54 3v31_A Ankyrin repeat family A 99.9 1.8E-26 6.2E-31 220.9 14.9 157 25-219 2-158 (167)
55 2f8y_A Notch homolog 1, transl 99.9 5E-26 1.7E-30 227.0 18.7 173 13-222 45-217 (223)
56 2etb_A Transient receptor pote 99.9 1.4E-26 4.7E-31 237.0 14.0 188 14-221 27-246 (256)
57 4gpm_A Engineered protein OR26 99.9 3.7E-26 1.3E-30 222.9 15.9 135 12-165 23-157 (169)
58 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.7E-26 9.1E-31 216.9 14.4 153 26-217 2-154 (156)
59 2pnn_A Transient receptor pote 99.9 1.2E-26 4E-31 240.1 12.8 184 21-224 49-261 (273)
60 1awc_B Protein (GA binding pro 99.9 4E-26 1.4E-30 215.9 15.2 151 26-215 2-152 (153)
61 3f6q_A Integrin-linked protein 99.9 4.3E-26 1.5E-30 221.3 14.9 161 24-221 3-163 (179)
62 3jxi_A Vanilloid receptor-rela 99.9 3.9E-26 1.3E-30 233.9 13.3 188 15-222 31-251 (260)
63 1sw6_A Regulatory protein SWI6 99.9 1.1E-27 3.8E-32 256.3 1.0 226 11-265 37-323 (327)
64 3kea_A K1L; tropism, ANK repea 99.9 1.3E-26 4.4E-31 243.1 8.9 195 15-253 53-249 (285)
65 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.5E-26 8.6E-31 234.3 10.1 175 24-237 3-193 (239)
66 4hbd_A KN motif and ankyrin re 99.9 1.4E-25 4.9E-30 234.3 13.7 163 19-218 104-272 (276)
67 1d9s_A Cyclin-dependent kinase 99.9 5.2E-25 1.8E-29 204.6 12.2 132 16-167 2-134 (136)
68 4hbd_A KN motif and ankyrin re 99.9 6.1E-26 2.1E-30 237.1 2.3 184 26-247 76-272 (276)
69 1bi7_B P16INK4A, MTS1, multipl 99.9 1.6E-24 5.4E-29 206.1 10.0 148 16-202 2-150 (156)
70 2vge_A RELA-associated inhibit 99.9 3.9E-24 1.3E-28 217.9 13.1 186 42-265 1-195 (229)
71 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.7E-23 5.6E-28 201.4 15.9 135 12-165 33-167 (169)
72 2jab_A H10-2-G3; HER2, darpin, 99.9 1.2E-23 4E-28 195.5 13.6 126 22-166 10-135 (136)
73 3v31_A Ankyrin repeat family A 99.9 3.6E-23 1.2E-27 197.9 16.7 137 14-169 24-160 (167)
74 1ycs_B 53BP2, P53BP2; ankyrin 99.9 8.5E-24 2.9E-28 215.6 13.0 168 11-208 23-193 (239)
75 3f6q_A Integrin-linked protein 99.9 3E-24 1E-28 208.3 9.2 165 71-258 3-171 (179)
76 3t8k_A Uncharacterized protein 99.9 4E-24 1.4E-28 211.6 9.7 162 26-219 6-177 (186)
77 3v30_A DNA-binding protein rfx 99.9 2.8E-23 9.7E-28 199.5 15.2 132 19-169 29-160 (172)
78 1awc_B Protein (GA binding pro 99.9 7.9E-23 2.7E-27 193.2 16.5 128 16-163 25-152 (153)
79 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.3E-23 1.1E-27 196.5 13.5 133 14-166 26-159 (162)
80 2rfm_A Putative ankyrin repeat 99.9 6.1E-23 2.1E-27 201.0 15.7 134 14-166 56-189 (192)
81 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8E-23 2.7E-27 184.5 14.7 123 25-166 1-123 (126)
82 3c5r_A BARD-1, BRCA1-associate 99.9 1.2E-23 4E-28 195.2 8.5 125 17-161 2-126 (137)
83 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5.8E-23 2E-27 193.9 13.4 130 16-166 26-155 (156)
84 3twr_A Tankyrase-2; ankyrin re 99.9 8.2E-23 2.8E-27 195.0 14.3 131 15-165 31-161 (165)
85 2b0o_E UPLC1; arfgap, structur 99.9 3.2E-22 1.1E-26 212.5 16.4 149 23-209 148-299 (301)
86 3deo_A Signal recognition part 99.9 4.9E-23 1.7E-27 201.2 8.6 140 23-217 41-180 (183)
87 3ui2_A Signal recognition part 99.9 5.4E-23 1.8E-27 210.9 8.9 142 23-219 42-183 (244)
88 1d9s_A Cyclin-dependent kinase 99.9 5.9E-23 2E-27 190.7 8.2 125 70-219 9-134 (136)
89 3aaa_C Myotrophin, protein V-1 99.9 1.8E-22 6.1E-27 184.0 11.2 112 23-153 4-115 (123)
90 3t8k_A Uncharacterized protein 99.9 1E-22 3.4E-27 201.5 7.5 139 17-171 28-181 (186)
91 1bi7_B P16INK4A, MTS1, multipl 99.9 3.8E-22 1.3E-26 189.6 9.1 136 70-230 9-149 (156)
92 2aja_A Ankyrin repeat family p 99.9 7.8E-24 2.7E-28 232.2 -3.3 178 22-242 88-271 (376)
93 2jab_A H10-2-G3; HER2, darpin, 99.9 8.7E-22 3E-26 182.8 10.5 125 70-218 11-135 (136)
94 3ehr_A Osteoclast-stimulating 99.9 4.4E-22 1.5E-26 199.7 8.2 127 22-166 69-195 (222)
95 3c5r_A BARD-1, BRCA1-associate 99.8 1.7E-21 5.7E-26 180.7 10.4 124 70-217 7-130 (137)
96 1n0r_A 4ANK, 4 ankyrin repeats 99.8 3.3E-21 1.1E-25 173.8 11.9 125 72-220 1-125 (126)
97 3jue_A Arfgap with coiled-coil 99.8 1.4E-20 4.9E-25 205.7 14.5 131 20-167 193-324 (368)
98 3aaa_C Myotrophin, protein V-1 99.8 7.6E-21 2.6E-25 173.2 8.9 116 70-209 4-119 (123)
99 1dcq_A PYK2-associated protein 99.8 4.4E-20 1.5E-24 193.8 15.4 132 23-167 127-261 (278)
100 3lvq_E ARF-GAP with SH3 domain 99.8 3.9E-20 1.3E-24 209.3 14.9 130 24-166 130-262 (497)
101 3deo_A Signal recognition part 99.8 2.4E-21 8.2E-26 189.2 3.4 171 33-244 7-178 (183)
102 3ehr_A Osteoclast-stimulating 99.8 1.6E-20 5.5E-25 188.2 8.3 167 22-220 21-197 (222)
103 3ui2_A Signal recognition part 99.8 2E-21 7E-26 199.1 1.0 141 71-249 43-184 (244)
104 2aja_A Ankyrin repeat family p 99.8 1.6E-21 5.4E-26 213.9 -0.2 199 21-243 123-367 (376)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.4E-19 4.9E-24 156.9 11.9 88 73-165 2-89 (93)
106 2b0o_E UPLC1; arfgap, structur 99.8 6.8E-20 2.3E-24 194.6 11.0 141 73-238 151-299 (301)
107 2l6b_A NR1C; ankyrin, consensu 99.8 3.8E-20 1.3E-24 166.3 7.6 110 20-148 3-112 (115)
108 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.3E-19 7.8E-24 155.6 11.7 75 57-136 19-93 (93)
109 1dcq_A PYK2-associated protein 99.8 2.8E-18 9.7E-23 179.9 13.5 187 22-235 62-273 (278)
110 2l6b_A NR1C; ankyrin, consensu 99.7 2.2E-18 7.6E-23 154.7 8.3 92 69-165 5-96 (115)
111 3lvq_E ARF-GAP with SH3 domain 99.7 6.2E-18 2.1E-22 191.3 13.1 136 73-233 132-275 (497)
112 3jue_A Arfgap with coiled-coil 99.7 3.5E-18 1.2E-22 186.8 10.4 124 72-219 198-324 (368)
113 2zgd_A 3 repeat synthetic anky 99.7 1.5E-17 5.1E-22 149.2 9.8 92 67-163 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 2E-16 7E-21 141.7 10.9 93 19-130 17-109 (110)
115 1m9o_A Tristetraproline; Cys3H 98.7 3.9E-09 1.3E-13 89.3 3.0 61 295-356 8-76 (77)
116 3d2q_A Muscleblind-like protei 98.4 2.7E-08 9.1E-13 82.8 -0.1 60 300-359 7-69 (70)
117 2e5s_A Otthump00000018578; ZF- 97.8 1.4E-06 4.7E-11 77.2 -1.7 61 299-359 20-83 (98)
118 2cqe_A KIAA1064 protein; CCCH 97.7 1.6E-05 5.4E-10 70.4 3.6 49 296-356 10-62 (98)
119 2d9n_A Cleavage and polyadenyl 97.5 5.2E-05 1.8E-09 64.1 2.8 58 294-358 5-65 (77)
120 2d9m_A Zinc finger CCCH-type d 97.2 3.6E-05 1.2E-09 63.1 -0.7 27 333-359 19-48 (69)
121 2rhk_C Cleavage and polyadenyl 97.2 7.4E-05 2.5E-09 62.3 1.2 56 296-358 13-71 (72)
122 3d2n_A Muscleblind-like protei 97.1 0.00012 4.2E-09 62.6 1.1 66 298-365 8-76 (83)
123 2rpp_A Muscleblind-like protei 96.7 0.00024 8.2E-09 61.6 -0.3 59 299-359 17-78 (89)
124 2d9m_A Zinc finger CCCH-type d 96.7 0.0002 7E-09 58.6 -0.9 40 300-339 21-63 (69)
125 1m9o_A Tristetraproline; Cys3H 96.3 0.0017 5.7E-08 54.4 2.5 32 329-360 7-42 (77)
126 2lhn_A Nuclear polyadenylated 88.6 0.077 2.6E-06 44.8 0.0 41 299-353 31-71 (80)
127 2cqe_A KIAA1064 protein; CCCH 88.6 0.23 7.8E-06 43.6 2.8 33 275-322 27-60 (98)
128 2d9n_A Cleavage and polyadenyl 88.6 0.26 9E-06 41.1 3.1 53 270-340 19-72 (77)
129 2lhn_A Nuclear polyadenylated 88.2 0.086 2.9E-06 44.5 0.0 41 300-353 10-50 (80)
130 2rhk_C Cleavage and polyadenyl 84.4 0.31 1.1E-05 40.3 1.2 31 328-358 10-43 (72)
131 3d2q_A Muscleblind-like protei 82.8 0.49 1.7E-05 38.7 1.8 45 277-325 23-67 (70)
132 2e5s_A Otthump00000018578; ZF- 78.4 0.66 2.2E-05 40.6 1.2 45 277-325 37-81 (98)
133 2fc6_A Nuclear, target of EGR1 76.8 1.3 4.3E-05 33.7 2.2 24 332-355 18-45 (50)
134 3d2n_A Muscleblind-like protei 68.3 2.3 7.8E-05 36.0 2.1 26 332-357 7-36 (83)
135 2rpp_A Muscleblind-like protei 66.9 0.96 3.3E-05 38.9 -0.5 40 277-322 34-73 (89)
136 3u1l_A PRE-mRNA-splicing facto 36.3 7.3 0.00025 39.4 -0.1 24 299-322 70-93 (240)
137 3v33_A Ribonuclease ZC3H12A; r 36.0 7.6 0.00026 38.9 0.0 23 333-355 191-214 (223)
138 4g26_A Pentatricopeptide repea 24.5 64 0.0022 35.7 5.0 122 30-173 33-172 (501)
139 1rpb_A Tricyclic peptide RP 71 23.0 29 0.00098 22.1 1.0 18 335-352 5-23 (26)
140 4g26_A Pentatricopeptide repea 20.7 1.3E+02 0.0044 33.2 6.5 92 75-172 110-206 (501)
No 1
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.97 E-value=1.6e-32 Score=282.67 Aligned_cols=209 Identities=16% Similarity=0.121 Sum_probs=178.7
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC---ccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911 19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSS---VDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 95 (724)
Q Consensus 19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gad---In~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 95 (724)
++..|.+|.||||+||..|++++|++||+ .+.+ ++.. +..|+||||+||..|+.++|++||++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~ 67 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQ-------------NDLGQTALHLAAILGEASTVEKLYAA 67 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHH-HHTTSGGGGCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCccccccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 46789999999999999999999999999 5666 5544 68899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC---------------------------------------
Q 004911 96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD--------------------------------------- 136 (724)
Q Consensus 96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd--------------------------------------- 136 (724)
|++++.. +..|.||||+|+..|+ .+++++|+++|++
T Consensus 68 -ga~~~~~-~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (282)
T 1oy3_D 68 -GAGVLVA-ERGGHTALHLACRVRA---HTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP 142 (282)
T ss_dssp -TCCSSCC-CTTSCCHHHHHTTTTC---HHHHHHHSSSCCSSCCCC----------------------------------
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCC---cchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhh
Confidence 9999998 9999999999999999 9999999998865
Q ss_pred --------CCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCC-CCCChhchhHhcC
Q 004911 137 --------PDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNS-DYSSPLLTASASG 207 (724)
Q Consensus 137 --------~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~-~G~TPLh~Aa~~G 207 (724)
++.+|..|.||||+|+..|+.++++.|++. |+ +++..+. .|.||||+|+..|
T Consensus 143 ~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----g~---------------~~~~~~~~~g~tpL~~A~~~~ 203 (282)
T 1oy3_D 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA----GA---------------DLNKPEPTCGRTPLHLAVEAQ 203 (282)
T ss_dssp -CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----TC---------------CTTCCCTTTCCCHHHHHHHTT
T ss_pred hhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc----CC---------------CCCCCCCCCCcCHHHHHHHcC
Confidence 778899999999999999999999988875 32 3445554 4999999999999
Q ss_pred CCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911 208 SPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR 265 (724)
Q Consensus 208 ~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~ 265 (724)
+.+++++| ++.+.++..|.||||+|+..++.++++.|++.|++++..|..|.+++...
T Consensus 204 ~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a 265 (282)
T 1oy3_D 204 AASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSS 265 (282)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC----------
T ss_pred CHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCccccccccc
Confidence 99996555 56678889999999999999999999999999999999999999998876
No 2
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=1.6e-31 Score=269.43 Aligned_cols=211 Identities=20% Similarity=0.253 Sum_probs=193.8
Q ss_pred CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911 17 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS 96 (724)
Q Consensus 17 ~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~ 96 (724)
.+++..|.+|.||||+||..|++++|++|++ .|++++.. +.+|+||||+|+..|+.++|++|+++
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~- 66 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQ-AGANIDTC-------------SEDQRTPLMEAAENNHLEAVKYLIKA- 66 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHTT-
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHH-cCCCcCcc-------------CCCCCCHHHHHHHhCCHHHHHHHHhC-
Confidence 4678899999999999999999999999999 78888876 57899999999999999999999999
Q ss_pred CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC-CCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911 97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG-ADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 175 (724)
Q Consensus 97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G-Ad~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 175 (724)
|++++.. +..|.||||+|+..|+ .+++++|++.| ++++..|..|.||||+|+..|+.++++.|++ .|+
T Consensus 67 g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~--- 135 (237)
T 3b7b_A 67 GALVDPK-DAEGSTCLHLAAKKGH---YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS----KGS--- 135 (237)
T ss_dssp TCCCCCC-CTTSCCHHHHHHHTTC---HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC---
T ss_pred CCCCCCC-CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH----CCC---
Confidence 9999998 9999999999999999 99999999998 8999999999999999999999998887776 342
Q ss_pred hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCcccccc
Q 004911 176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSI 251 (724)
Q Consensus 176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i 251 (724)
+++..+..|.||||+|+..|+.+++++|+ +.+..+..|.||||+|+..++.+++..|++.|+++
T Consensus 136 ------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~ 203 (237)
T 3b7b_A 136 ------------DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203 (237)
T ss_dssp ------------CTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT
T ss_pred ------------CCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCC
Confidence 45667889999999999999999966665 55677888999999999999999999999999999
Q ss_pred ccccccccccceee
Q 004911 252 YATDEFRMFSFKIR 265 (724)
Q Consensus 252 ~~~D~~g~~~fkV~ 265 (724)
...|..|.++++++
T Consensus 204 ~~~d~~g~t~l~~A 217 (237)
T 3b7b_A 204 TLKNKEGETPLQCA 217 (237)
T ss_dssp TCCCTTSCCHHHHS
T ss_pred CccCCCCCCHHHHH
Confidence 99999999999887
No 3
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=2.4e-32 Score=280.39 Aligned_cols=211 Identities=20% Similarity=0.204 Sum_probs=159.0
Q ss_pred CCCCCCCCCchHHHHHHHcC-------------CHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcC
Q 004911 18 NSTAETEDSFTSMLELASNN-------------DVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG 84 (724)
Q Consensus 18 di~~~d~~g~TpLh~AA~~G-------------~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G 84 (724)
|++..|.+|.||||+|+..| +.++|+.||+ .|.+++... +..|+||||+||..|
T Consensus 2 dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~-~g~~~~~~~------------d~~g~t~L~~A~~~g 68 (253)
T 1yyh_A 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY-QGASLHNQT------------DRTGETALHLAARYS 68 (253)
T ss_dssp ---------------------------------------------------CC------------CTTSCCHHHHHHHTT
T ss_pred CCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH-ccCCccccc------------CCCCCcHHHHHHHcC
Confidence 57889999999999999987 9999999999 677775432 688999999999999
Q ss_pred CHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCC-CCCCCCCCCCcHHHHHhcCCCHHHHHHH
Q 004911 85 SVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGA-DPDCVDANGHHPIDVIVLPPKLDSMRAI 163 (724)
Q Consensus 85 ~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GA-d~n~~D~~G~TPLhlAa~~G~~eivk~L 163 (724)
+.++|++||++ |++++.. +..|+||||+|+..|+ .+++++|+++|+ +++..|..|.||||+|+..|+.++++.|
T Consensus 69 ~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 143 (253)
T 1yyh_A 69 RSDAAKRLLEA-SADANIQ-DNMGRTPLHAAVSADA---QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143 (253)
T ss_dssp CHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHH
T ss_pred CHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHH
Confidence 99999999999 9999999 9999999999999999 999999999987 9999999999999999999999888877
Q ss_pred HHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCC
Q 004911 164 LEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYP 239 (724)
Q Consensus 164 Le~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~ 239 (724)
++ .|+ +++..|..|.||||+|+..|+.+++++| ++.+..+..|.||||+|+..++.+
T Consensus 144 l~----~g~---------------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~ 204 (253)
T 1yyh_A 144 IN----SHA---------------DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYE 204 (253)
T ss_dssp HH----TTC---------------CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred HH----cCC---------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHH
Confidence 76 342 4567788999999999999999996655 566688889999999999999999
Q ss_pred CCCCCCccccccccccccccccceee
Q 004911 240 IDPSLPDIKNSIYATDEFRMFSFKIR 265 (724)
Q Consensus 240 i~~~L~d~ga~i~~~D~~g~~~fkV~ 265 (724)
+++.|++.|++++..|..|.++++++
T Consensus 205 ~v~~Ll~~ga~~~~~d~~g~tpl~~A 230 (253)
T 1yyh_A 205 TAKVLLDHFANRDITDHMDRLPRDIA 230 (253)
T ss_dssp HHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHcCCCccccccCCCCHHHHH
Confidence 99999999999999999999999886
No 4
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=2.3e-31 Score=268.07 Aligned_cols=210 Identities=18% Similarity=0.191 Sum_probs=185.0
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHh---cCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911 19 STAETEDSFTSMLELASNNDVEGFKRMLE---RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 95 (724)
Q Consensus 19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe---~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 95 (724)
++..|.+|.||||+||..|++++|++|++ ..+.+++.. +..|+||||+|+..|+.++|++|+++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 68 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIY-------------NNLRQTPLHLAVITTLPSVVRLLVTA 68 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcc-------------cccCCCHHHHHHHcCCHHHHHHHHHc
Confidence 35678999999999999999999999997 378888876 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCC----CCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCC
Q 004911 96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGA----DPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK 171 (724)
Q Consensus 96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GA----d~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g 171 (724)
|++++.. +..|.||||+|+..|+ .+++++|+++++ +++..|..|.||||+|+..|+.++++.|++. |
T Consensus 69 -g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g 139 (241)
T 1k1a_A 69 -GASPMAL-DRHGQTAAHLACEHRS---PTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER----G 139 (241)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT----T
T ss_pred -CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc----C
Confidence 9999998 9999999999999999 999999999987 8999999999999999999999888877763 3
Q ss_pred CCchhhhcccccccccccCCCC-CCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCc
Q 004911 172 NSSVVVASGAEHNLTVSIGSSN-SDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPD 246 (724)
Q Consensus 172 a~~~~~aa~~~~~l~~~in~~d-~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d 246 (724)
+ +++..+ ..|.||||+|+..|+.++++.| ++.+..+..|.||||+|+..++.++++.|++
T Consensus 140 ~---------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 140 A---------------DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp C---------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred C---------------CcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 2 344455 7899999999999999996655 4666788889999999999999999999999
Q ss_pred cccccccccccccccceee
Q 004911 247 IKNSIYATDEFRMFSFKIR 265 (724)
Q Consensus 247 ~ga~i~~~D~~g~~~fkV~ 265 (724)
.|++++..|..|.++++++
T Consensus 205 ~ga~~~~~~~~g~tpl~~A 223 (241)
T 1k1a_A 205 SGADSSLKNCHNDTPLMVA 223 (241)
T ss_dssp TTCCTTCCCTTSCCTTTTC
T ss_pred cCCCCCCcCCCCCCHHHHH
Confidence 9999999999999999886
No 5
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=3.7e-31 Score=273.10 Aligned_cols=202 Identities=21% Similarity=0.259 Sum_probs=182.3
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 004911 25 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC 104 (724)
Q Consensus 25 ~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~ 104 (724)
+|+||||+||..|++++|++||+ .|++++.. +.+|+||||+||..|+.++|++||++ |+++|..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~- 65 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLIS-QGWAVNII-------------TADHVSPLHEACLGGHLSCVKILLKH-GAQVNGV- 65 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH-TTCCSSCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCC-
Confidence 58999999999999999999999 78898877 58999999999999999999999999 9999999
Q ss_pred CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccc
Q 004911 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHN 184 (724)
Q Consensus 105 d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~ 184 (724)
+.+|.||||+|+..|+ .++|++|+++|++++. +.+|.||||+|+..|+.++++.|++. |+
T Consensus 66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~------------ 125 (261)
T 2xai_A 66 TADWHTPLFNACVSGS---WDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAY----GG------------ 125 (261)
T ss_dssp CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHT----TC------------
T ss_pred CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHc----CC------------
Confidence 9999999999999999 9999999999999986 45699999999999999988877763 32
Q ss_pred cccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCccccccccccccccc
Q 004911 185 LTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMF 260 (724)
Q Consensus 185 l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~ 260 (724)
+++..|..|.||||+|+..|+.++++.|+ +.+. +..|.||||+|+..++.++++.|++.|++++..|..|.+
T Consensus 126 ---~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t 201 (261)
T 2xai_A 126 ---NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKR 201 (261)
T ss_dssp ---CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred ---CCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 46677889999999999999999966665 4443 678999999999999999999999999999999999999
Q ss_pred cceeec
Q 004911 261 SFKIRP 266 (724)
Q Consensus 261 ~fkV~p 266 (724)
+++++.
T Consensus 202 pl~~A~ 207 (261)
T 2xai_A 202 PVELVP 207 (261)
T ss_dssp GGGGSC
T ss_pred hhhhcc
Confidence 999873
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=9.7e-31 Score=276.97 Aligned_cols=213 Identities=23% Similarity=0.224 Sum_probs=145.7
Q ss_pred cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911 15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL 94 (724)
Q Consensus 15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe 94 (724)
.+.+++..|..|.||||+||..|++++|++||+ .|++++.. +..|+||||+||..|+.++|++||+
T Consensus 47 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~iv~~Ll~ 112 (351)
T 3utm_A 47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQ-HGADVHAK-------------DKGGLVPLHNACSYGHYEVTELLLK 112 (351)
T ss_dssp TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCcHHHHHHHCCCHHHHHHHHH
Confidence 344555566666666666666666666666666 55665554 3556666666666666666666666
Q ss_pred cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCC------------------------------
Q 004911 95 HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG------------------------------ 144 (724)
Q Consensus 95 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G------------------------------ 144 (724)
+ |++++.. +..|.||||+|+..|+ .++|++|+++|++++..+..|
T Consensus 113 ~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 187 (351)
T 3utm_A 113 H-GACVNAM-DLWQFTPLHEAASKNR---VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAR 187 (351)
T ss_dssp T-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHH
Confidence 6 6666665 6666666666666666 666666666666665544333
Q ss_pred ------------------------CcHHHHHhcCCC---HHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCC
Q 004911 145 ------------------------HHPIDVIVLPPK---LDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYS 197 (724)
Q Consensus 145 ------------------------~TPLhlAa~~G~---~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~ 197 (724)
.||||+|+..++ .++++.| +..| .+++..|..|.
T Consensus 188 ~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~L----l~~g---------------~~~~~~~~~g~ 248 (351)
T 3utm_A 188 EADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELL----LRKG---------------ANVNEKNKDFM 248 (351)
T ss_dssp TTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHH----HHTT---------------CCTTCCCTTCC
T ss_pred hccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHH----HHcC---------------CCcCCcCCCCC
Confidence 333444443321 2222222 2222 25677899999
Q ss_pred ChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911 198 SPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR 265 (724)
Q Consensus 198 TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~ 265 (724)
||||+|+..|+.+++++| ++.+..+..|.||||+|+..++.++++.|++.|++++..|..|.++++++
T Consensus 249 t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a 320 (351)
T 3utm_A 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHS
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhh
Confidence 999999999999996665 46778889999999999999999999999999999999999999988875
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=7.7e-31 Score=275.01 Aligned_cols=212 Identities=21% Similarity=0.243 Sum_probs=191.8
Q ss_pred CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911 16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 95 (724)
Q Consensus 16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 95 (724)
...++..|.+|.||||+||..|++++|++||+ .|++++.. +.+|+||||+||..|+.++|++||++
T Consensus 49 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~ 114 (285)
T 3d9h_A 49 SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS-QGWAVNII-------------TADHVSPLHEACLGGHLSCVKILLKH 114 (285)
T ss_dssp CCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHH-TTCCSCEE-------------CTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred hCcccCCCccCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHCCcHHHHHHHHHC
Confidence 44567889999999999999999999999999 78888876 58999999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911 96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 175 (724)
Q Consensus 96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 175 (724)
|++++.. +..|.||||+|+..|+ .++|++|+++|++++..+ .|.||||+|+..|+.++++.|++. |+
T Consensus 115 -ga~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~----g~--- 181 (285)
T 3d9h_A 115 -GAQVNGV-TADWHTPLFNACVSGS---WDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY----GG--- 181 (285)
T ss_dssp -TCCSSCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHT----TC---
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCH---HHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC----CC---
Confidence 9999999 9999999999999999 999999999999998655 599999999999999988877763 32
Q ss_pred hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc---cccCCCCccccccccCCCCCCCCCCccccccc
Q 004911 176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM---ALKFNDVSFGTGAEKREYPIDPSLPDIKNSIY 252 (724)
Q Consensus 176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a---~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~ 252 (724)
+++..|..|.||||+|+..|+.+++++|++.++ .+..|.||||+|+..++.++++.|++.|++++
T Consensus 182 ------------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~ 249 (285)
T 3d9h_A 182 ------------NIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFGADTQ 249 (285)
T ss_dssp ------------CTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred ------------CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 456778899999999999999999777765442 36789999999999999999999999999999
Q ss_pred cccccccccceeec
Q 004911 253 ATDEFRMFSFKIRP 266 (724)
Q Consensus 253 ~~D~~g~~~fkV~p 266 (724)
..|..|.++++++.
T Consensus 250 ~~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 250 AKNAEGKRPVELVP 263 (285)
T ss_dssp CCCTTSCCGGGGSC
T ss_pred CcCCCCCCHHHHhc
Confidence 99999999999874
No 8
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.96 E-value=1.5e-30 Score=261.21 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=177.7
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911 24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS 103 (724)
Q Consensus 24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~ 103 (724)
..+.|+||.||..|+++.|+.|++..+..++.. +..|+||||+||..|+.++|++|+++ |++++..
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~ 69 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLATRT-------------DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDK 69 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhhhcC-------------CCCCCCHHHHHHHcCcHHHHHHHHHh-CCCCCCc
Confidence 456789999999999999999998665555554 57899999999999999999999998 9999998
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccc
Q 004911 104 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEH 183 (724)
Q Consensus 104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~ 183 (724)
+..|+||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ .|+
T Consensus 70 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~----------- 130 (231)
T 3aji_A 70 -DDAGWSPLHIAASAGX---DEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE----GGA----------- 130 (231)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC-----------
T ss_pred -CCCCCCHHHHHHHcCH---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC-----------
Confidence 8999999999999999 999999999999999999999999999999999888887766 332
Q ss_pred ccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCcccccccccccccc
Q 004911 184 NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRM 259 (724)
Q Consensus 184 ~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~ 259 (724)
+++..+..|.||||+|+..|+.+++++++ +.+..+..|.||||+|+..++.++++.|++.|++++..|..+.
T Consensus 131 ----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 206 (231)
T 3aji_A 131 ----NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEK 206 (231)
T ss_dssp ----CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSC
T ss_pred ----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 45567788999999999999998866654 5667788899999999999999999999999999999999999
Q ss_pred ccceee
Q 004911 260 FSFKIR 265 (724)
Q Consensus 260 ~~fkV~ 265 (724)
++++++
T Consensus 207 t~l~~A 212 (231)
T 3aji_A 207 TPLQVA 212 (231)
T ss_dssp CHHHHS
T ss_pred CHHHHH
Confidence 888876
No 9
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.96 E-value=5.2e-30 Score=255.96 Aligned_cols=204 Identities=18% Similarity=0.195 Sum_probs=180.0
Q ss_pred cccccCCCCCCC-CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHH
Q 004911 11 NTEDMNNNSTAE-TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVL 89 (724)
Q Consensus 11 ~~~~m~~di~~~-d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evV 89 (724)
...+.+.+++.. |.+|.||||+||..|++++|++||+ .|++++.. +..|+||||+|+..|+.++|
T Consensus 9 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v 74 (223)
T 2f8y_A 9 DFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQ-------------DNMGRTPLHAAVSADAQGVF 74 (223)
T ss_dssp TTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHH
Confidence 344456666654 8899999999999999999999999 78888876 58899999999999999999
Q ss_pred HHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911 90 KLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG 169 (724)
Q Consensus 90 klLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~ 169 (724)
++|++++..+++.. +..|.||||+|+..|+ .+++++|+++|++++..|..|+||||+|+..|+.++++.|++.
T Consensus 75 ~~Ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--- 147 (223)
T 2f8y_A 75 QILIRNRATDLDAR-MHDGTTPLILAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--- 147 (223)
T ss_dssp HHHHHBTTSCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT---
T ss_pred HHHHHcCCCCcccC-CCCCCcHHHHHHHhCc---HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc---
Confidence 99999933489988 9999999999999999 9999999999999999999999999999999999988877763
Q ss_pred CCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCC
Q 004911 170 SKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLP 245 (724)
Q Consensus 170 ~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~ 245 (724)
|+ +++..|..|.||||+|+..|+.++++.|+ +.+..+..|.||+++|+..++.++++.|+
T Consensus 148 -g~---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~ 211 (223)
T 2f8y_A 148 -GA---------------NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 211 (223)
T ss_dssp -TC---------------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred -CC---------------CCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHH
Confidence 32 45677899999999999999999966654 66678889999999999999999999998
Q ss_pred cccccc
Q 004911 246 DIKNSI 251 (724)
Q Consensus 246 d~ga~i 251 (724)
+.|+..
T Consensus 212 ~~g~~~ 217 (223)
T 2f8y_A 212 EYNLVR 217 (223)
T ss_dssp HTTCSS
T ss_pred HcCCCc
Confidence 887643
No 10
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.96 E-value=1.1e-30 Score=272.43 Aligned_cols=222 Identities=18% Similarity=0.183 Sum_probs=188.2
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911 22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN 101 (724)
Q Consensus 22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN 101 (724)
.+.+|.|+||.||..|++++|++||+ .|+++|.. +.+|+||||+||..|+.++|++||++ |+++|
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~ 100 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLE-RGADINYA-------------NVDGLTALHQACIDDNVDMVKFLVEN-GANIN 100 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHH-HCCCTTCB-------------CTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCC
Confidence 45578899999999999999999999 78888876 58899999999999999999999999 99999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccc
Q 004911 102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA 181 (724)
Q Consensus 102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~ 181 (724)
.. +..|+||||+|+..|+ .++|++||++|++++..|..|.||||+|+..++.++++.++.. .+.+........
T Consensus 101 ~~-~~~g~tpL~~A~~~g~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~---~~~~~~~~~~~~ 173 (299)
T 1s70_B 101 QP-DNEGWIPLHAAASCGY---LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR---QGVDIEAARKEE 173 (299)
T ss_dssp CC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH---HTCCHHHHHHHH
T ss_pred CC-CCCCCcHHHHHHHcCC---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhh---cCCCchhhhhhh
Confidence 99 9999999999999999 9999999999999999999999999999999988888776653 111111000000
Q ss_pred cc-----------ccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCc
Q 004911 182 EH-----------NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPD 246 (724)
Q Consensus 182 ~~-----------~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d 246 (724)
.. .-.......+..|.||||+|+..|+.++++.|+ +.+..+..|.||||+|+..|+.+++..|++
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 253 (299)
T 1s70_B 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253 (299)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHH
Confidence 00 000122345678999999999999999966665 566788899999999999999999999999
Q ss_pred cccccccccccccccceee
Q 004911 247 IKNSIYATDEFRMFSFKIR 265 (724)
Q Consensus 247 ~ga~i~~~D~~g~~~fkV~ 265 (724)
.|++++..|..|.++++++
T Consensus 254 ~gad~~~~d~~g~t~l~~A 272 (299)
T 1s70_B 254 NLCDMEAVNKVGQTAFDVA 272 (299)
T ss_dssp TTCCTTCCCTTSCCTTTSC
T ss_pred cCCCCCCcCCCCCCHHHHH
Confidence 9999999999999999987
No 11
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.96 E-value=3.2e-30 Score=257.97 Aligned_cols=204 Identities=15% Similarity=0.116 Sum_probs=180.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC--CCcccc
Q 004911 26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS--ADVNVS 103 (724)
Q Consensus 26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G--ADVN~~ 103 (724)
|.||||.||..|++++|+.||+..+..++.. +..|+||||+|+..|+.++|++|+++ | ++++..
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~ 67 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQK-------------DQDGRIPLHWSVSFQAHEITSFLLSK-MENVNLDDY 67 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-CTTCCGGGC
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccC-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-ccccccccc
Confidence 6799999999999999999999543333323 68899999999999999999999999 8 666662
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC--CCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccc
Q 004911 104 CGSDRTTALHCAASGGSANVVDVVRLLLSAG--ADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA 181 (724)
Q Consensus 104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G--Ad~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~ 181 (724)
.+..|.||||+|+..|+ .+++++|+++| ++++..|..|.||||+|+..|+.++++.|++. |+
T Consensus 68 ~~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~----g~--------- 131 (228)
T 2dzn_A 68 PDDSGWTPFHIACSVGN---LEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN----GA--------- 131 (228)
T ss_dssp CCTTSCCHHHHHHHHCC---HHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TC---------
T ss_pred CCCCCCCHHHHHHHcCC---HHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc----CC---------
Confidence 28899999999999999 99999999998 99999999999999999999999988877763 42
Q ss_pred ccccccccCCCCCCCCChhchhHhcCCCchhhhhcC-----CCccccCCCCccccccccCCCCCCCCCC-cccccccccc
Q 004911 182 EHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS-----SPMALKFNDVSFGTGAEKREYPIDPSLP-DIKNSIYATD 255 (724)
Q Consensus 182 ~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad-----~~a~~~~g~TpLh~Aa~~g~~~i~~~L~-d~ga~i~~~D 255 (724)
+++..|..|.||||+|+..|+.++++.|++ .+..+..|.||||+|+..++.+++..|+ +.|++++..|
T Consensus 132 ------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~ 205 (228)
T 2dzn_A 132 ------SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD 205 (228)
T ss_dssp ------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred ------CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence 456778899999999999999999777754 4567888999999999999999999999 8899999999
Q ss_pred ccccccceee
Q 004911 256 EFRMFSFKIR 265 (724)
Q Consensus 256 ~~g~~~fkV~ 265 (724)
..|.++++++
T Consensus 206 ~~g~t~l~~A 215 (228)
T 2dzn_A 206 NKGAKAEDVA 215 (228)
T ss_dssp TTSCBGGGGC
T ss_pred CCCCcHHHHH
Confidence 9999999887
No 12
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.96 E-value=4e-30 Score=274.25 Aligned_cols=224 Identities=20% Similarity=0.183 Sum_probs=182.6
Q ss_pred ccccCCCCCCCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCccccc--------------------cccccccCCcccC
Q 004911 12 TEDMNNNSTAETE-DSFTSMLELASNNDVEGFKRMLERDPSSVDEVG--------------------LWYGRVNGSKQMV 70 (724)
Q Consensus 12 ~~~m~~di~~~d~-~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~g--------------------l~~a~~~g~~~~d 70 (724)
..+.+++++..+. .|+||||+||..|+.++|++||+ .|++++..+ +........+..|
T Consensus 44 LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 122 (337)
T 4g8k_A 44 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECD 122 (337)
T ss_dssp HHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBC
T ss_pred HHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH-cCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhc
Confidence 3446888888775 49999999999999999999999 888887654 2223344566778
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc---------cCCCCCcHHHHHHhCCCCCHHHHHHHHHH-CCCCCCCC
Q 004911 71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVS---------CGSDRTTALHCAASGGSANVVDVVRLLLS-AGADPDCV 140 (724)
Q Consensus 71 ~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~---------~d~~G~TPLH~Aa~~G~~~~~eiVklLLe-~GAd~n~~ 140 (724)
..|+||||+|+..|+.+++++|+++ |++++.. .+..|.||||+|+..|+ .++|++||+ .|++++.+
T Consensus 123 ~~g~t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~---~~~v~~LL~~~gad~n~~ 198 (337)
T 4g8k_A 123 FYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNAC 198 (337)
T ss_dssp TTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHHHTC---HHHHHHHHHHSCCCTTCC
T ss_pred cCCCCHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHHCCC---HHHHHHHHhccCCCcCcc
Confidence 8999999999999999999999998 9988764 14568999999999999 999999996 59999999
Q ss_pred CCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc----
Q 004911 141 DANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV---- 216 (724)
Q Consensus 141 D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La---- 216 (724)
|..|.|+||.++..+....++.++++|++.|+ +++.+|..|.||||+|+..|+.++++.|+
T Consensus 199 d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~ga---------------d~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~ 263 (337)
T 4g8k_A 199 DNMGRNALIHALLSSDDSDVEAITHLLLDHGA---------------DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 263 (337)
T ss_dssp CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTC---------------CTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTT
T ss_pred CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCC---------------CCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcC
Confidence 99999999988876665555666777777775 45667888888888888888888866554
Q ss_pred -CCCccccCCCCccccccccCCCCCCCCCCcccccccccc
Q 004911 217 -SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATD 255 (724)
Q Consensus 217 -d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D 255 (724)
+++.++..|.||||+|+..|+.++++.|++.|++++..|
T Consensus 264 ~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~ 303 (337)
T 4g8k_A 264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 303 (337)
T ss_dssp CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence 556778888888888888888888888888888887654
No 13
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=2.8e-30 Score=259.85 Aligned_cols=192 Identities=20% Similarity=0.215 Sum_probs=170.0
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc----
Q 004911 25 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADV---- 100 (724)
Q Consensus 25 ~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADV---- 100 (724)
.|.||||+||..|++++|+.||+..|++++.. +..|+||||+||..|+.++|++||++ |+++
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~ 67 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-------------GAMGETALHIAALYDNLEAAMVLMEA-APELVFEP 67 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-Cchhcccc
Confidence 47899999999999999999999669999887 68999999999999999999999999 9987
Q ss_pred -ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC-------------CCCcHHHHHhcCCCHHHHHHHHHH
Q 004911 101 -NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA-------------NGHHPIDVIVLPPKLDSMRAILEE 166 (724)
Q Consensus 101 -N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~-------------~G~TPLhlAa~~G~~eivk~LLe~ 166 (724)
+.. +..|.||||+|+..|+ .++|++||++|++++..+. .|.||||+|+..|+.++++.|++.
T Consensus 68 ~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 143 (232)
T 2rfa_A 68 MTSE-LYEGQTALHIAVINQN---VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH 143 (232)
T ss_dssp CCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHT
T ss_pred cccc-CCCCcCHHHHHHHcCC---HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 555 7799999999999999 9999999999999999876 799999999999999988877763
Q ss_pred HHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchh----hhhcCCC----------ccccCCCCccccc
Q 004911 167 VFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSP----SRLVSSP----------MALKFNDVSFGTG 232 (724)
Q Consensus 167 Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiV----e~Lad~~----------a~~~~g~TpLh~A 232 (724)
|+ +++..|..|.||||+|+..|+.+++ +.|+..+ ..+..|.||||+|
T Consensus 144 ----ga---------------~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A 204 (232)
T 2rfa_A 144 ----GA---------------DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLA 204 (232)
T ss_dssp ----TC---------------CTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHH
T ss_pred ----CC---------------CCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHH
Confidence 43 5677899999999999999999876 6666543 5678899999999
Q ss_pred cccCCCCCCCCCCcccccccc
Q 004911 233 AEKREYPIDPSLPDIKNSIYA 253 (724)
Q Consensus 233 a~~g~~~i~~~L~d~ga~i~~ 253 (724)
+..|+.++++.|++.|.....
T Consensus 205 ~~~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 205 GVEGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp HHHTCHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHhcCccchh
Confidence 999999999999988766544
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.96 E-value=1.1e-29 Score=261.99 Aligned_cols=211 Identities=18% Similarity=0.214 Sum_probs=178.8
Q ss_pred cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911 13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI 92 (724)
Q Consensus 13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL 92 (724)
.+.+.+++..|.+|.||||+|+..|+.++|++|++ .|++++.. +.+|+||||+|+..|+.++|++|
T Consensus 23 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~L 88 (261)
T 2xai_A 23 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-------------TADWHTPLFNACVSGSWDCVNLL 88 (261)
T ss_dssp HHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHH
Confidence 34577889999999999999999999999999999 78999877 58999999999999999999999
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911 93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN 172 (724)
Q Consensus 93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga 172 (724)
|++ |++++.. .+|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..|+.++++.|++. |+
T Consensus 89 l~~-g~~~~~~--~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~ 158 (261)
T 2xai_A 89 LQH-GASVQPE--SDLASPIHEAARRGH---VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES----GA 158 (261)
T ss_dssp HHT-TCCSSCS--CTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHH----TC
T ss_pred HHC-CCCCCCC--CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHc----CC
Confidence 999 9999864 679999999999999 9999999999999999999999999999999999999988875 32
Q ss_pred CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh----hcCCCccccCCCCccccccccCCCCCCCCCCccc
Q 004911 173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIK 248 (724)
Q Consensus 173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~g 248 (724)
+++ .+..|.||||+|+..|+.++++. +++.+.++..|.||+|+|+..+ +++..|++.+
T Consensus 159 ---------------~~~-~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~~~~--~~~~~ll~~~ 220 (261)
T 2xai_A 159 ---------------DVN-QGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVPPES--PLAQLFLERE 220 (261)
T ss_dssp ---------------CTT-CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTTC--THHHHHHHC-
T ss_pred ---------------CCC-CCCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhccccc--cHHHHHHhcc
Confidence 223 26789999999999999998554 5677788999999999999654 4566665554
Q ss_pred cc--------cccccccccccceee
Q 004911 249 NS--------IYATDEFRMFSFKIR 265 (724)
Q Consensus 249 a~--------i~~~D~~g~~~fkV~ 265 (724)
.. +...|.+|.+.++..
T Consensus 221 ~~~~l~~~~~~~~r~~~g~t~l~~~ 245 (261)
T 2xai_A 221 GPPSLMQLCRLRIRKCFGIQQHHKI 245 (261)
T ss_dssp CCCCHHHHHHHHHHTTSCTTCGGGG
T ss_pred CCccHHHHHHHHHHHHhchhccccC
Confidence 42 334566666655543
No 15
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.96 E-value=1.7e-29 Score=254.38 Aligned_cols=197 Identities=22% Similarity=0.185 Sum_probs=174.1
Q ss_pred cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911 15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL 94 (724)
Q Consensus 15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe 94 (724)
.+.+++..|..|.||||+|+..|+.++|++|++ .|++++.. +..|+||||+|+..|+.+++++|++
T Consensus 35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~Ll~ 100 (241)
T 1k1a_A 35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT-AGASPMAL-------------DRHGQTAAHLACEHRSPTCLRALLD 100 (241)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 567888999999999999999999999999999 88888876 5889999999999999999999999
Q ss_pred cCCC----CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911 95 HSSA----DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVIVLPPKLDSMRAILEEVFG 169 (724)
Q Consensus 95 ~~GA----DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlAa~~G~~eivk~LLe~Ll~ 169 (724)
. ++ +++.. +..|.||||+|+..|+ .+++++|+++|++++..+ ..|.||||+|+..|+.++++.|++.
T Consensus 101 ~-~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--- 172 (241)
T 1k1a_A 101 S-AAPGTLDLEAR-NYDGLTALHVAVNTEC---QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH--- 172 (241)
T ss_dssp H-SCTTSCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT---
T ss_pred c-CCCcccccccc-CcCCCcHHHHHHHcCC---HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc---
Confidence 9 76 88888 9999999999999999 999999999999999999 8999999999999999998877763
Q ss_pred CCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCC
Q 004911 170 SKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLP 245 (724)
Q Consensus 170 ~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~ 245 (724)
|+ +++..|..|.||||+|+..|+.++++.| ++.+.++..|.|||++|+..++.++++.|.
T Consensus 173 -g~---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~ 236 (241)
T 1k1a_A 173 -GA---------------NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA 236 (241)
T ss_dssp -TC---------------CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC--
T ss_pred -CC---------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhc
Confidence 42 4567788999999999999999995555 566778899999999999999999999887
Q ss_pred cccc
Q 004911 246 DIKN 249 (724)
Q Consensus 246 d~ga 249 (724)
+.++
T Consensus 237 ~~~a 240 (241)
T 1k1a_A 237 TRPA 240 (241)
T ss_dssp ----
T ss_pred cCCC
Confidence 7543
No 16
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=8.9e-30 Score=261.21 Aligned_cols=215 Identities=19% Similarity=0.169 Sum_probs=161.4
Q ss_pred ccCCCCCCC-CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911 14 DMNNNSTAE-TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI 92 (724)
Q Consensus 14 ~m~~di~~~-d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL 92 (724)
+.+.+++.. +..|.||||+|+..|+.++|++||+ .|++++.. +..|.||||+|+..|+.++|++|
T Consensus 26 ~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~L 91 (285)
T 1wdy_A 26 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR-HGADPVLR-------------KKNGATPFLLAAIAGSVKLLKLF 91 (285)
T ss_dssp HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCccc-------------CCCCCCHHHHHHHcCCHHHHHHH
Confidence 345666665 7778899999999999999999998 78887765 57888999999999999999999
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCC----------CCCCCcHHHHHhcCCCHHHHHH
Q 004911 93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCV----------DANGHHPIDVIVLPPKLDSMRA 162 (724)
Q Consensus 93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~----------D~~G~TPLhlAa~~G~~eivk~ 162 (724)
+++ |++++.. +..|.||||+|+..|+ .+++++|+++|++++.. +..|.||||+|+..|+.++++.
T Consensus 92 l~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 166 (285)
T 1wdy_A 92 LSK-GADVNEC-DFYGFTAFMEAAVYGK---VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166 (285)
T ss_dssp HHT-TCCTTCB-CTTCCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHH
T ss_pred HHc-CCCCCcc-CcccCCHHHHHHHhCC---HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHH
Confidence 988 8999888 8889999999999998 89999999999888877 7788899999999888888887
Q ss_pred HHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCC----Cch----hhhhcCCCccccCCCCccccccc
Q 004911 163 ILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS----PPS----PSRLVSSPMALKFNDVSFGTGAE 234 (724)
Q Consensus 163 LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~----~ei----Ve~Lad~~a~~~~g~TpLh~Aa~ 234 (724)
|++. .++ +++..|..|.||||+|+..++ .++ ++.+++.+..+..|.||||+|+.
T Consensus 167 Ll~~---~~~---------------~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~ 228 (285)
T 1wdy_A 167 LLDE---MGA---------------DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228 (285)
T ss_dssp HHHT---SCC---------------CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHH
T ss_pred HHHh---cCC---------------CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 7763 121 344556666666666666666 333 33334555556666666666666
Q ss_pred cCCCCCCCCCCc-cccccccccccccccceee
Q 004911 235 KREYPIDPSLPD-IKNSIYATDEFRMFSFKIR 265 (724)
Q Consensus 235 ~g~~~i~~~L~d-~ga~i~~~D~~g~~~fkV~ 265 (724)
.++.++++.|++ .|.+++..|..|.++++++
T Consensus 229 ~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A 260 (285)
T 1wdy_A 229 KKHLGLVQRLLEQEHIEINDTDSDGKTALLLA 260 (285)
T ss_dssp TTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHH
T ss_pred cCCHHHHHHHHhccCCCccccCCCCCcHHHHH
Confidence 666666666665 5666666666666666654
No 17
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=1.2e-30 Score=281.29 Aligned_cols=210 Identities=14% Similarity=0.144 Sum_probs=187.4
Q ss_pred CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911 16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 95 (724)
Q Consensus 16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 95 (724)
+.+++..|.+|.||||+||..|++++|++||+ .|++++.. +..|+||||+||..|+.++|++||++
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~ 75 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIE-TGVSPTIQ-------------NRFGCTALHLACKFGCVDTAKYLASV 75 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHCCHHHHHHHHHH
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCcccc-------------CCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence 34566788899999999999999999999999 78999877 68999999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC----CCCCCC-----------------CCCCCCcHHHHHhcC
Q 004911 96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA----GADPDC-----------------VDANGHHPIDVIVLP 154 (724)
Q Consensus 96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~----GAd~n~-----------------~D~~G~TPLhlAa~~ 154 (724)
|++++. .+|.||||+|+..|+ .++|++||++ |++++. .|..|.||||+|+..
T Consensus 76 -g~~~~~---~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 148 (364)
T 3ljn_A 76 -GEVHSL---WHGQKPIHLAVMANK---TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL 148 (364)
T ss_dssp -CCCCCC---BTTBCHHHHHHHTTC---HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS
T ss_pred -CCCccc---cCCCCHHHHHHHcCC---HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc
Confidence 997764 479999999999999 9999999999 888887 889999999999999
Q ss_pred C--CHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcC---------CCcccc
Q 004911 155 P--KLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS---------SPMALK 223 (724)
Q Consensus 155 G--~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad---------~~a~~~ 223 (724)
| +.++++.|++. |+ +++..|..|.||||+|+..|+.+++++|++ .+..+.
T Consensus 149 g~~~~~~v~~Ll~~----ga---------------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~ 209 (364)
T 3ljn_A 149 GPEYLEMIKILVQL----GA---------------SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209 (364)
T ss_dssp CGGGHHHHHHHHHH----TC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCT
T ss_pred CCchHHHHHHHHHc----CC---------------CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCC
Confidence 9 99999988875 32 456778899999999999999999877774 677788
Q ss_pred CCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911 224 FNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR 265 (724)
Q Consensus 224 ~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~ 265 (724)
.|.||||+|+..|+.++++.|++.|++++..|..+.++++++
T Consensus 210 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 210 QGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp TCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999999999999999999886
No 18
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.96 E-value=3.5e-30 Score=258.62 Aligned_cols=194 Identities=22% Similarity=0.227 Sum_probs=174.4
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911 19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 98 (724)
Q Consensus 19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 98 (724)
++..+.+|.||||+|+..|++++|++|++ .|++++.. +..|+||||+|+..|+.++|++|+++ |+
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~ 97 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDK-------------DDAGWSPLHIAASAGXDEIVKALLVK-GA 97 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TC
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHH-hCCCCCCc-------------CCCCCCHHHHHHHcCHHHHHHHHHHc-CC
Confidence 56778999999999999999999999999 78888876 58899999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhh
Q 004911 99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA 178 (724)
Q Consensus 99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~a 178 (724)
+++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ .|+
T Consensus 98 ~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~------ 163 (231)
T 3aji_A 98 HVNAV-NQNGCTPLHYAASKNR---HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF----YKA------ 163 (231)
T ss_dssp CTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH----TTC------
T ss_pred CCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh----cCC------
Confidence 99999 9999999999999999 999999999999999999999999999999999998887776 332
Q ss_pred cccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCccccc
Q 004911 179 SGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNS 250 (724)
Q Consensus 179 a~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~ 250 (724)
+++..|..|.||||+|+..|+.+++++| ++.+.++..|.||+++|...++..+.+.|.+.+++
T Consensus 164 ---------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 164 ---------STNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp ---------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred ---------CccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 4567789999999999999999996555 56667888999999999998888887777666554
No 19
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=1.2e-30 Score=273.90 Aligned_cols=198 Identities=16% Similarity=0.148 Sum_probs=178.9
Q ss_pred CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911 17 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS 96 (724)
Q Consensus 17 ~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~ 96 (724)
.+++..|.+|.||||+||..|++++|++||+ .|++++.. +|+||||+||..|+.++|++||++
T Consensus 22 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~---------------~g~t~L~~A~~~g~~~~v~~Ll~~- 84 (285)
T 3kea_A 22 KDTFKADVHGHSASYYAIADNNVRLVCTLLN-AGALKNLL---------------ENEFPLHQAATLEDTKIVKILLFS- 84 (285)
T ss_dssp TTTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTGGGSCC---------------TTCCHHHHHTTSSSCHHHHHHHHT-
T ss_pred CCCCccCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCC---------------CCCCHHHHHHHcCCHHHHHHHHHC-
Confidence 3688999999999999999999999999999 78888864 489999999999999999999999
Q ss_pred CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCC-CcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911 97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANG-HHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 175 (724)
Q Consensus 97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G-~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 175 (724)
|+++|.. +..|+||||+|+..|+ .++|++|+++|++++.+|..| .||||+|+..|+.++++.|++. |+.
T Consensus 85 ga~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~----g~~-- 154 (285)
T 3kea_A 85 GLDDSQF-DDKGNTALYYAVDSGN---MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE----IPS-- 154 (285)
T ss_dssp TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT----SCT--
T ss_pred CCCCCCc-CCCCCcHHHHHHHcCC---HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC----CCc--
Confidence 9999998 9999999999999999 999999999999999999999 7999999999999888877663 321
Q ss_pred hhhcccccccccccCCCCC-CCCChhchhHhcCCCchhhhh----cCCCccccCCCCc-cccccccCCCCCCCCCCcccc
Q 004911 176 VVASGAEHNLTVSIGSSNS-DYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVS-FGTGAEKREYPIDPSLPDIKN 249 (724)
Q Consensus 176 ~~aa~~~~~l~~~in~~d~-~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~Tp-Lh~Aa~~g~~~i~~~L~d~ga 249 (724)
..+. .|.||||+|+..|+.+++++| ++.+..+..|.|| ||+|+..++.++++.|++.|+
T Consensus 155 ---------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ga 219 (285)
T 3kea_A 155 ---------------TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI 219 (285)
T ss_dssp ---------------TCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCB
T ss_pred ---------------cccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCC
Confidence 1122 789999999999999995555 5778889999998 999999999999999999999
Q ss_pred ccccccc
Q 004911 250 SIYATDE 256 (724)
Q Consensus 250 ~i~~~D~ 256 (724)
+++..|.
T Consensus 220 d~~~~~~ 226 (285)
T 3kea_A 220 NIYSANL 226 (285)
T ss_dssp CSTTTTG
T ss_pred CCCCCCh
Confidence 9998885
No 20
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=2e-30 Score=271.03 Aligned_cols=215 Identities=17% Similarity=0.195 Sum_probs=116.5
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCH-HHHHHHHhcCCCC
Q 004911 21 AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSV-DVLKLILLHSSAD 99 (724)
Q Consensus 21 ~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~-evVklLLe~~GAD 99 (724)
.+|..+.++|+.||..|++++|++||+ .+.+..... .......+..|.||||.|+..+.. .++++|++. |+|
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~-~~~~~~~~~-----~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~-Gad 78 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLE-WTEEDLEDA-----EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS-GLG 78 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHT-CC---------------------------------------------C-CCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHH-CCCcccccc-----cccccccCccCCCHHHHHHHhCCHHHHHHHHHHC-CCC
Confidence 356678899999999999999999999 444321110 111122345566666666665554 355666666 666
Q ss_pred cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhc
Q 004911 100 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVAS 179 (724)
Q Consensus 100 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa 179 (724)
||.. |.+|+||||+||..|+ .++|++||+.|++++..+..|.||+|+|+..++.++++.|++ .|+
T Consensus 79 vn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~----~g~------- 143 (269)
T 4b93_B 79 VNVT-SQDGSSPLHVAALHGR---ADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLD----SNA------- 143 (269)
T ss_dssp TTCC-CTTSCCHHHHHHHTTC---TTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH----TTC-------
T ss_pred CCCc-CCCCCCHHHHHHHcCc---HHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHH----CCC-------
Confidence 6666 6666666666666666 666666666666666666666666666666666665555444 221
Q ss_pred ccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCcccccccccc
Q 004911 180 GAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATD 255 (724)
Q Consensus 180 ~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D 255 (724)
+++..|..|.||||+|+..|+.++|++| ++++..+..|.||||+|+..|+.++++.|++.|++++..|
T Consensus 144 --------~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d 215 (269)
T 4b93_B 144 --------KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN 215 (269)
T ss_dssp --------CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred --------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence 3445566666666666666666664333 3445556666666666666666666666666666666666
Q ss_pred ccccccceee
Q 004911 256 EFRMFSFKIR 265 (724)
Q Consensus 256 ~~g~~~fkV~ 265 (724)
..|.++++++
T Consensus 216 ~~G~TpL~~A 225 (269)
T 4b93_B 216 KRQRTAVDCA 225 (269)
T ss_dssp TTSCCSGGGS
T ss_pred CCCCCHHHHH
Confidence 6666666655
No 21
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=5.6e-29 Score=242.93 Aligned_cols=157 Identities=31% Similarity=0.439 Sum_probs=143.9
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCC
Q 004911 28 TSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSD 107 (724)
Q Consensus 28 TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~ 107 (724)
+.|+.||..|++++|+.||+ .|+++|.. |.+|+||||+|+..|+.+++++||+. |+|++.+ +.+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~-~Gadvn~~-------------d~~g~t~l~~a~~~~~~~~~~~ll~~-gad~~~~-d~~ 69 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE-NGADVNAS-------------DSDGRTPLHHAAENGHKEVVKLLISK-GADVNAK-DSD 69 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTT
T ss_pred HHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-ccchhhh-ccC
Confidence 57999999999999999999 89999987 68999999999999999999999999 9999999 999
Q ss_pred CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccccc
Q 004911 108 RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTV 187 (724)
Q Consensus 108 G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~ 187 (724)
|+||||+|+..|+ .++|++||++|+|+|.+|.+|+||||+|+..|+.++++.|++ .|+
T Consensus 70 g~TpLh~A~~~g~---~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~----~ga--------------- 127 (169)
T 4gpm_A 70 GRTPLHHAAENGH---KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS----KGA--------------- 127 (169)
T ss_dssp SCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC---------------
T ss_pred CCCHHHHHHHcCC---HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC---------------
Confidence 9999999999999 999999999999999999999999999999999998887766 343
Q ss_pred ccCCCCCCCCChhchhHhcCCCchhhhhcCCCccc
Q 004911 188 SIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL 222 (724)
Q Consensus 188 ~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~ 222 (724)
+++.+|.+|.||||+|+..|+.+++++|++.++..
T Consensus 128 d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 128 DVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred CccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 56678999999999999999999999999888643
No 22
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=1.5e-29 Score=259.63 Aligned_cols=211 Identities=23% Similarity=0.217 Sum_probs=187.6
Q ss_pred ccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHH
Q 004911 12 TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL 91 (724)
Q Consensus 12 ~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVkl 91 (724)
..+.+.+++..+.+|.||||+|+..|+.++|++|++ .|++++.. +..|+||||+|+..|+.+++++
T Consensus 58 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~ 123 (285)
T 1wdy_A 58 LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS-KGADVNEC-------------DFYGFTAFMEAAVYGKVKALKF 123 (285)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCTTCB-------------CTTCCBHHHHHHHTTCHHHHHH
T ss_pred HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CcccCCHHHHHHHhCCHHHHHH
Confidence 344677888999999999999999999999999999 78888876 5889999999999999999999
Q ss_pred HHhcCCCCccccc---------CCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHhcCCCHHHHH
Q 004911 92 ILLHSSADVNVSC---------GSDRTTALHCAASGGSANVVDVVRLLLSA-GADPDCVDANGHHPIDVIVLPPKLDSMR 161 (724)
Q Consensus 92 LLe~~GADVN~~~---------d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~n~~D~~G~TPLhlAa~~G~~eivk 161 (724)
|+++ |++++... +..|.||||+|+..|+ .+++++|++. |++++..|..|+||||+|+..++.+.+.
T Consensus 124 Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~ 199 (285)
T 1wdy_A 124 LYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKGH---VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVE 199 (285)
T ss_dssp HHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTC---HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHH
T ss_pred HHHh-CCCcccccccHHHHHhhccCCCcHHHHHHHcCC---HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHH
Confidence 9999 99998762 5679999999999999 9999999998 9999999999999999999999954444
Q ss_pred HHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc-----CCCccccCCCCccccccccC
Q 004911 162 AILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV-----SSPMALKFNDVSFGTGAEKR 236 (724)
Q Consensus 162 ~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La-----d~~a~~~~g~TpLh~Aa~~g 236 (724)
.+++.|++.|+ +++..|..|.||||+|+..|+.+++++|+ +.+..+..|.||||+|+..+
T Consensus 200 ~i~~~Ll~~g~---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~ 264 (285)
T 1wdy_A 200 AITHLLLDHGA---------------DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 264 (285)
T ss_dssp HHHHHHHHTTC---------------CSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCC---------------CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence 55555666664 56677899999999999999999977665 45788889999999999999
Q ss_pred CCCCCCCCCcccccccccc
Q 004911 237 EYPIDPSLPDIKNSIYATD 255 (724)
Q Consensus 237 ~~~i~~~L~d~ga~i~~~D 255 (724)
+.++++.|++.|++++..|
T Consensus 265 ~~~i~~~Ll~~Ga~~~~~d 283 (285)
T 1wdy_A 265 LKKIAELLCKRGASTDCGD 283 (285)
T ss_dssp CHHHHHHHHHHSSCSCCSS
T ss_pred cHHHHHHHHHcCCCCCccc
Confidence 9999999999999998877
No 23
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=1.8e-30 Score=262.69 Aligned_cols=209 Identities=13% Similarity=0.100 Sum_probs=174.6
Q ss_pred CCCCCCCchHHHHHHHcCCHHHHHHHHhcCC---CCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911 20 TAETEDSFTSMLELASNNDVEGFKRMLERDP---SSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS 96 (724)
Q Consensus 20 ~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~g---adIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~ 96 (724)
+..|.+|.||||+||..|+.++|+.||+... ++++.. +..|+||||+||..|+.++|++||++
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~- 67 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQ-------------NNLQQTPLHLAVITNQPEIAEALLGA- 67 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCC-------------CTTCCCHHHHHHHTTCHHHHHCCCSC-
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-
Confidence 3568899999999999999999999998432 256655 57899999999999999999999999
Q ss_pred CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC------CCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcC
Q 004911 97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD------PDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGS 170 (724)
Q Consensus 97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd------~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ 170 (724)
|++++.. +..|.||||+|+..|+ .+++++|+++|++ ++..|..|.||||+|+..|+.++++.|++.
T Consensus 68 g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---- 139 (236)
T 1ikn_D 68 GCDPELR-DFRGNTPLHLACEQGC---LASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSL---- 139 (236)
T ss_dssp CCCSCCC-CTTCCCHHHHHHHHTC---HHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHH----
T ss_pred CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc----
Confidence 9999998 9999999999999999 9999999999986 467888999999999999999999888775
Q ss_pred CCCchhhhcccccccccccCCCCC-CCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCC
Q 004911 171 KNSSVVVASGAEHNLTVSIGSSNS-DYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLP 245 (724)
Q Consensus 171 ga~~~~~aa~~~~~l~~~in~~d~-~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~ 245 (724)
|+ +++..+. .|.||||+|+..|+.+++++|+ +.+..+..|.||||+|+..++.++++.|+
T Consensus 140 g~---------------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll 204 (236)
T 1ikn_D 140 GA---------------DVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 204 (236)
T ss_dssp TC---------------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred CC---------------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHH
Confidence 32 4556676 8999999999999999966655 55677888999999999999999999999
Q ss_pred ccccccc--cccccccccceee
Q 004911 246 DIKNSIY--ATDEFRMFSFKIR 265 (724)
Q Consensus 246 d~ga~i~--~~D~~g~~~fkV~ 265 (724)
+.|++.. ..+..+.+++...
T Consensus 205 ~~ga~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 205 QLTLENLQMLPESEDEESYDTE 226 (236)
T ss_dssp TTSCGGGSSCCCCCTTTCCCCC
T ss_pred HcchhhhhcCCccchHHHHhhh
Confidence 9998765 5666666666554
No 24
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=2.1e-29 Score=263.28 Aligned_cols=211 Identities=21% Similarity=0.267 Sum_probs=142.5
Q ss_pred CCCCCCCCCCchHHHHHHHcCCHH-HHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911 17 NNSTAETEDSFTSMLELASNNDVE-GFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 95 (724)
Q Consensus 17 ~di~~~d~~g~TpLh~AA~~G~le-~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 95 (724)
..++..+..+.||||.|+..++.+ +++.|++ .|+++|.. |.+|+||||+||..|+.++|++||+.
T Consensus 43 ~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~-~Gadvn~~-------------d~~G~TpLh~A~~~g~~~~v~~Ll~~ 108 (269)
T 4b93_B 43 DTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA-SGLGVNVT-------------SQDGSSPLHVAALHGRADLIPLLLKH 108 (269)
T ss_dssp ---------------------------------CCCCTTCC-------------CTTSCCHHHHHHHTTCTTHHHHHHHT
T ss_pred ccccccCccCCCHHHHHHHhCCHHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHhc
Confidence 346678889999999999988765 7788888 89999987 68999999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911 96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 175 (724)
Q Consensus 96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 175 (724)
|++++.. +.+|.||||+|+..++ .+++++||++|++++.+|..|+||||+|+..|+.++++.|++ .|+
T Consensus 109 -~a~~~~~-~~~g~t~l~~a~~~~~---~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~----~ga--- 176 (269)
T 4b93_B 109 -GANAGAR-NADQAVPLHLACQQGH---FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ----HGA--- 176 (269)
T ss_dssp -TCCTTCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHH----TTC---
T ss_pred -CCCcCcc-CCCCCCccccccccCh---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHH----CCC---
Confidence 9999999 9999999999999999 999999999999999999999999999999999998887776 343
Q ss_pred hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCC-CCCCCCCCccccc
Q 004911 176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKRE-YPIDPSLPDIKNS 250 (724)
Q Consensus 176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~-~~i~~~L~d~ga~ 250 (724)
+++..+..|.||||+|+..|+.++|+.| +++++++..|.||||+|+..++ .++.+.|...++.
T Consensus 177 ------------dvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~~ 244 (269)
T 4b93_B 177 ------------SINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVAS 244 (269)
T ss_dssp ------------CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCHHHHHTTC-------
T ss_pred ------------CCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhchh
Confidence 5677889999999999999999995554 5777889999999999998876 3445555554443
Q ss_pred c---ccccccccccceee
Q 004911 251 I---YATDEFRMFSFKIR 265 (724)
Q Consensus 251 i---~~~D~~g~~~fkV~ 265 (724)
+ ..+|......++++
T Consensus 245 ~~~~~~td~~~~~~~~ir 262 (269)
T 4b93_B 245 LDDVAETDRKEYVTVKIR 262 (269)
T ss_dssp ------------------
T ss_pred hhhccCCChhhhHHHHHh
Confidence 3 33444444344443
No 25
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.96 E-value=1.3e-29 Score=260.12 Aligned_cols=196 Identities=19% Similarity=0.197 Sum_probs=169.5
Q ss_pred ccCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911 14 DMNNNSTA-ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI 92 (724)
Q Consensus 14 ~m~~di~~-~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL 92 (724)
+.+.+++. .|.+|.||||+||..|+.++|++||+ .|++++.. +..|+||||+|+..|+.++|++|
T Consensus 44 ~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~L 109 (253)
T 1yyh_A 44 YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE-ASADANIQ-------------DNMGRTPLHAAVSADAQGVFQIL 109 (253)
T ss_dssp --------CCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHH
Confidence 34555543 58899999999999999999999999 78998876 58899999999999999999999
Q ss_pred HhcCCC-CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCC
Q 004911 93 LLHSSA-DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK 171 (724)
Q Consensus 93 Le~~GA-DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g 171 (724)
|++ |+ +++.. +..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++. |
T Consensus 110 l~~-~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----g 180 (253)
T 1yyh_A 110 IRN-RATDLDAR-MHDGTTPLILAARLAV---EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN----G 180 (253)
T ss_dssp HHS-TTSCTTCC-CTTCCCHHHHHHHHTC---SSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT----T
T ss_pred HHc-CCCCcccc-CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc----C
Confidence 999 65 99998 9999999999999999 9999999999999999999999999999999999988877763 4
Q ss_pred CCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCcc
Q 004911 172 NSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDI 247 (724)
Q Consensus 172 a~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ 247 (724)
+ +++..|..|.||||+|+..|+.++++.| ++.+..+..|.||+++|+..|+.+++..|...
T Consensus 181 a---------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 181 A---------------NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp C---------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC-
T ss_pred C---------------CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 3 4567789999999999999999996555 46667889999999999999999988766443
No 26
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=1.1e-29 Score=280.17 Aligned_cols=212 Identities=23% Similarity=0.263 Sum_probs=171.4
Q ss_pred CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911 16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 95 (724)
Q Consensus 16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 95 (724)
+++++..+..|.||||+||..|++++|++||+ .|++++.. +..|.||||+||..|+.++|++||++
T Consensus 4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~-------------~~~~~t~L~~A~~~g~~~~v~~Ll~~ 69 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQ-RGASPNVS-------------NVKVETPLHMAARAGHTEVAKYLLQN 69 (437)
T ss_dssp -----------CCHHHHHHHHTCHHHHHHHHH-TTCCSCCS-------------SSCCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 56778899999999999999999999999999 78888876 57899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCch
Q 004911 96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSV 175 (724)
Q Consensus 96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~ 175 (724)
|+++|.. +.+|.||||+|+..|+ .++|++|+++|++++..|..|.||||+|+..|+.++++.|++. ++
T Consensus 70 -g~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~----~~--- 137 (437)
T 1n11_A 70 -KAKVNAK-AKDDQTPLHCAARIGH---TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK----EA--- 137 (437)
T ss_dssp -TCCSSCC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TC---
T ss_pred -CCCCCCC-CCCCCCHHHHHHHCCC---HHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC----CC---
Confidence 9999998 9999999999999999 9999999999999999999999999999999999999888763 21
Q ss_pred hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCccccccccCCCCCCCCCCcccccc
Q 004911 176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSI 251 (724)
Q Consensus 176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i 251 (724)
.++..+..|.||||+|+..|+.+++++|+ +.+..+..|.||||+|+..++.++++.|++.+.++
T Consensus 138 ------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 205 (437)
T 1n11_A 138 ------------SQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205 (437)
T ss_dssp ------------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS
T ss_pred ------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence 23345667788888888888887766554 44556667788888888888888888888877777
Q ss_pred ccccccccccceee
Q 004911 252 YATDEFRMFSFKIR 265 (724)
Q Consensus 252 ~~~D~~g~~~fkV~ 265 (724)
...+..+.++++.+
T Consensus 206 ~~~~~~g~t~L~~A 219 (437)
T 1n11_A 206 HSPAWNGYTPLHIA 219 (437)
T ss_dssp CCCCTTCCCHHHHH
T ss_pred CCcCCCCCCHHHHH
Confidence 77777777666654
No 27
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=3.6e-29 Score=245.83 Aligned_cols=189 Identities=19% Similarity=0.226 Sum_probs=168.6
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911 24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS 103 (724)
Q Consensus 24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~ 103 (724)
..+.|+||.||..|+.+.|+.||+..+.+++.. +.+|+||||+||..|+.++|++||++ |++++..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~ 68 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEV-------------DTEGNTPLNIAVHNNDIEIAKALIDR-GADINLQ 68 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC
Confidence 467899999999999999999999777788876 58899999999999999999999999 9999998
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHH-HCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccc
Q 004911 104 CGSDRTTALHCAASGGSANVVDVVRLLL-SAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE 182 (724)
Q Consensus 104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLL-e~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~ 182 (724)
+..|.||||+|+..|+ .+++++|+ ..+++++..|..|.||||+|+..|+.++++.|++. +.
T Consensus 69 -~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~---------- 130 (201)
T 3hra_A 69 -NSISDSPYLYAGAQGR---TEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED----GR---------- 130 (201)
T ss_dssp -CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH----CC----------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc----CC----------
Confidence 9999999999999999 99999999 56889999999999999999999999999988875 20
Q ss_pred cccccccCCCCCCCCChhchhHhcCC-----Cchhhh----hcCCCccccCCCCccccccccCCCCCCCCCCccc
Q 004911 183 HNLTVSIGSSNSDYSSPLLTASASGS-----PPSPSR----LVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIK 248 (724)
Q Consensus 183 ~~l~~~in~~d~~G~TPLh~Aa~~G~-----~eiVe~----Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~g 248 (724)
.+++..|..|.||||+|+..+. .++++. +++.+..+..|.||||+|+..++.++++.|++.|
T Consensus 131 ----~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 131 ----EDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp ----CCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred ----CCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 1567788999999999999988 667544 5677788999999999999999998888776654
No 28
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=3.5e-30 Score=280.42 Aligned_cols=221 Identities=16% Similarity=0.156 Sum_probs=193.6
Q ss_pred CCCCCCCC-CCCchHHHHHHHcCCHHHHHHHHh-------cCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHH
Q 004911 16 NNNSTAET-EDSFTSMLELASNNDVEGFKRMLE-------RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVD 87 (724)
Q Consensus 16 ~~di~~~d-~~g~TpLh~AA~~G~le~Vk~LLe-------~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~e 87 (724)
+.+++..| ..|.||||+||..|+.++|+.||. ..|+++|.. |.+|.||||+||..|+.+
T Consensus 114 ~~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~-------------d~~g~TpL~~A~~~g~~~ 180 (373)
T 2fo1_E 114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAM-------------DCDENTPLMLAVLARRRR 180 (373)
T ss_dssp TTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCC-------------CTTSCCHHHHHHHHTCHH
T ss_pred cccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCC-------------CCCCCCHHHHHHHcChHH
Confidence 45678877 789999999999999999888873 388998887 689999999999999999
Q ss_pred HHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC---CCCCCCCCCCCcHHHHHhcCC---CHHHHH
Q 004911 88 VLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG---ADPDCVDANGHHPIDVIVLPP---KLDSMR 161 (724)
Q Consensus 88 vVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G---Ad~n~~D~~G~TPLhlAa~~G---~~eivk 161 (724)
+|++||++ |++++.. +..|.||||+|+..|+ .++|++||++| ++++..|..|.||||+|+..+ +.++++
T Consensus 181 iv~~Ll~~-ga~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~ 255 (373)
T 2fo1_E 181 LVAYLMKA-GADPTIY-NKSERSALHQAAANRD---FGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255 (373)
T ss_dssp HHHHHHHT-TCCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHH
T ss_pred HHHHHHHC-CCCCccc-CCCCCCHHHHHHHCCC---HHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHH
Confidence 99999999 9999998 9999999999999999 99999999998 899999999999999999987 788888
Q ss_pred HHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc-----CCCccccCCCCccccccccC
Q 004911 162 AILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV-----SSPMALKFNDVSFGTGAEKR 236 (724)
Q Consensus 162 ~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La-----d~~a~~~~g~TpLh~Aa~~g 236 (724)
.|++....... ......+..|..|.||||+|+..|+.++|++|+ +.+..+..|.||||+|+..|
T Consensus 256 ~Ll~~g~~~~~-----------~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g 324 (373)
T 2fo1_E 256 LLVEKGAKVDY-----------DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG 324 (373)
T ss_dssp HHHHHTCCSSC-----------CSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHCCCCccc-----------ccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC
Confidence 77775322221 001134556889999999999999999977765 56678889999999999999
Q ss_pred CCCCCCCCCccccccccccccccccceee
Q 004911 237 EYPIDPSLPDIKNSIYATDEFRMFSFKIR 265 (724)
Q Consensus 237 ~~~i~~~L~d~ga~i~~~D~~g~~~fkV~ 265 (724)
+.++++.|++.|++++..|..|.++++++
T Consensus 325 ~~~iv~~Ll~~gad~~~~d~~g~t~l~~A 353 (373)
T 2fo1_E 325 RIEVVMYLIQQGASVEAVDATDHTARQLA 353 (373)
T ss_dssp CHHHHHHHHHTTCCSSCCCSSSCCHHHHH
T ss_pred CHHHHHHHHHcCCCccCCCCCCCCHHHHH
Confidence 99999999999999999999999998886
No 29
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=2.9e-29 Score=276.66 Aligned_cols=233 Identities=19% Similarity=0.186 Sum_probs=154.4
Q ss_pred ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911 14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL 93 (724)
Q Consensus 14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL 93 (724)
+.+.+++..+..|.||||+|+..|+++++++|++ .+++++.. +..|.||||+|+..|+.++|++|+
T Consensus 134 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll 199 (437)
T 1n11_A 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAA-------------GKNGLTPLHVAVHHNNLDIVKLLL 199 (437)
T ss_dssp HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CSSCCCHHHHHHHTTCHHHHHHHG
T ss_pred hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHh-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3455666777788888888888888888888888 67777665 345555555555555555555555
Q ss_pred hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcC---
Q 004911 94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGS--- 170 (724)
Q Consensus 94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~--- 170 (724)
++ |++++.. +..|.||||+|+..|+ .+++++|+++|++++..+..|.||||+|+..|+.++++.|++.....
T Consensus 200 ~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~ 274 (437)
T 1n11_A 200 PR-GGSPHSP-AWNGYTPLHIAAKQNQ---VEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274 (437)
T ss_dssp GG-TCCSCCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC
T ss_pred hC-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCC
Confidence 55 5555554 5555555555555555 55555555555555555555555555555555555554444321110
Q ss_pred ---CCCchhhhcccccc--------cccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCCCCcccccccc
Q 004911 171 ---KNSSVVVASGAEHN--------LTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFNDVSFGTGAEK 235 (724)
Q Consensus 171 ---ga~~~~~aa~~~~~--------l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g~TpLh~Aa~~ 235 (724)
|.++.+.++..... ...+++..+..|.||||+|+..|+.++|++|+ +++.++..|.||||+|+..
T Consensus 275 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~ 354 (437)
T 1n11_A 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354 (437)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHC
Confidence 11111111111100 01256778899999999999999999966654 5667888899999999999
Q ss_pred CCCCCCCCCCccccccccccccccccceee
Q 004911 236 REYPIDPSLPDIKNSIYATDEFRMFSFKIR 265 (724)
Q Consensus 236 g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~ 265 (724)
|+.++++.|++.|++++..|..|.++++++
T Consensus 355 g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A 384 (437)
T 1n11_A 355 GHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384 (437)
T ss_dssp TCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred ChHHHHHHHHHCcCCCCCCCCCCCCHHHHH
Confidence 999999999999999999999999998886
No 30
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=1.1e-29 Score=273.55 Aligned_cols=208 Identities=13% Similarity=0.106 Sum_probs=181.3
Q ss_pred ccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHH
Q 004911 12 TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL 91 (724)
Q Consensus 12 ~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVkl 91 (724)
..+.+++++..|..|.||||+||..|++++|++||+ .|++++. .+|.||||+|+..|+.++|++
T Consensus 39 Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~---------------~~g~t~L~~A~~~g~~~~v~~ 102 (364)
T 3ljn_A 39 LIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS-VGEVHSL---------------WHGQKPIHLAVMANKTDLVVA 102 (364)
T ss_dssp HHHTTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHH-HCCCCCC---------------BTTBCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCccc---------------cCCCCHHHHHHHcCCHHHHHH
Confidence 344678899999999999999999999999999999 5666554 469999999999999999999
Q ss_pred HHhcC---CCCccc-----------------ccCCCCCcHHHHHHhCC--CCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911 92 ILLHS---SADVNV-----------------SCGSDRTTALHCAASGG--SANVVDVVRLLLSAGADPDCVDANGHHPID 149 (724)
Q Consensus 92 LLe~~---GADVN~-----------------~~d~~G~TPLH~Aa~~G--~~~~~eiVklLLe~GAd~n~~D~~G~TPLh 149 (724)
||+.. |++++. . +..|.||||+|+..| + .++|++||++|++++.+|..|+||||
T Consensus 103 Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~~~---~~~v~~Ll~~ga~~~~~d~~g~t~L~ 178 (364)
T 3ljn_A 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVK-HCKGQTALHWCVGLGPEY---LEMIKILVQLGASPTAKDKADETPLM 178 (364)
T ss_dssp HHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE-EESCCCHHHHHHHSCGGG---HHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred HHHhccccCCCHHHHHhhcchHhhhhhccccC-CCCCCCHHHHHHHcCCch---HHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 99862 566666 6 789999999999999 8 99999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc----CCCccccCC
Q 004911 150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV----SSPMALKFN 225 (724)
Q Consensus 150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La----d~~a~~~~g 225 (724)
+|+..|+.++++.|++.+... ...+++..|..|.||||+|+..|+.++|++|+ +++..+..|
T Consensus 179 ~A~~~g~~~~v~~Ll~~g~~~--------------~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g 244 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDTVPSK--------------SSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEH 244 (364)
T ss_dssp HHHHTTCHHHHHHHHHHCSCS--------------SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTS
T ss_pred HHHHcCCHHHHHHHHhccccc--------------ccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence 999999999999888753221 11247788999999999999999999966655 666888999
Q ss_pred CCccccccccCCCCCCCCCCcccccccc
Q 004911 226 DVSFGTGAEKREYPIDPSLPDIKNSIYA 253 (724)
Q Consensus 226 ~TpLh~Aa~~g~~~i~~~L~d~ga~i~~ 253 (724)
.||||+|+..|+.++++.|++.++.+..
T Consensus 245 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~ 272 (364)
T 3ljn_A 245 TVPLYLSVRAAMVLLTKELLQKTDVFLI 272 (364)
T ss_dssp CCHHHHHHHTCCHHHHHHHHHHSCHHHH
T ss_pred CCHHHHHHHhChHHHHHHHHHcCCchhh
Confidence 9999999999999999999998876643
No 31
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.96 E-value=5.8e-29 Score=265.20 Aligned_cols=216 Identities=22% Similarity=0.205 Sum_probs=181.9
Q ss_pred ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911 14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL 93 (724)
Q Consensus 14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL 93 (724)
..+.+++..|..|.||||+|+..|+.+++++|++ .|++++... .........+..|.||||+||..|+.++|++||
T Consensus 113 ~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~-~ga~~~~~~---~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL 188 (337)
T 4g8k_A 113 SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK-RGANVNLRR---KTKEDQERLRKGGATALMDAAEKGHVEVLKILL 188 (337)
T ss_dssp TTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCCC---CCC-----CTTCSCCHHHHHHHHTCHHHHHHHH
T ss_pred hccchhhhhccCCCCHHHHHHHcCcHHHHHHHHH-cCCCcchhh---ccccccccccCCCCcHHHHHHHCCCHHHHHHHH
Confidence 3566788899999999999999999999999999 888887642 122233345678999999999999999999999
Q ss_pred hcCCCCcccccCCCCCcHHHHHHhCCCC-CHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911 94 LHSSADVNVSCGSDRTTALHCAASGGSA-NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN 172 (724)
Q Consensus 94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~-~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga 172 (724)
++.|+|+|.. +..|.|+||+++..+.. ...+++++|+++|+++|.+|..|+||||+|+..|+.++++.|++. .+
T Consensus 189 ~~~gad~n~~-d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~---~~- 263 (337)
T 4g8k_A 189 DEMGADVNAC-DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ---EH- 263 (337)
T ss_dssp HHSCCCTTCC-CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS---TT-
T ss_pred hccCCCcCcc-CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh---cC-
Confidence 7669999999 99999999988765542 235689999999999999999999999999999999988876652 22
Q ss_pred CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccCCCCccccccccCCCCCCCCCCccccccc
Q 004911 173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIY 252 (724)
Q Consensus 173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~ 252 (724)
.+++.+|.+|.||||+|+..|+.++|++|++.++. .+..+|||+|+..++.++++.|++.|++++
T Consensus 264 --------------~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 264 --------------IEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS-TDCGDLVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp --------------CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-STTCCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred --------------CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 25778899999999999999999999999988864 456689999999999999999999999886
Q ss_pred c
Q 004911 253 A 253 (724)
Q Consensus 253 ~ 253 (724)
.
T Consensus 329 ~ 329 (337)
T 4g8k_A 329 F 329 (337)
T ss_dssp -
T ss_pred C
Confidence 5
No 32
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.96 E-value=6.4e-29 Score=262.99 Aligned_cols=225 Identities=20% Similarity=0.194 Sum_probs=190.8
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911 19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 98 (724)
Q Consensus 19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 98 (724)
.+..+..+.|+||.||..|+++.|+.||...+.+++.. |..|+||||+||..|+.++|++||++ |+
T Consensus 17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~ 82 (351)
T 3utm_A 17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHAS-------------DGRKSTPLHLAAGYNRVRIVQLLLQH-GA 82 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCS-------------STTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence 34556678899999999999999999999778888876 68899999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhh
Q 004911 99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA 178 (724)
Q Consensus 99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~a 178 (724)
++|.. +..|.||||+|+..|+ .++|++|+++|++++..|..|.||||+|+..|+.++++.|++. |++.....
T Consensus 83 ~~~~~-~~~g~t~L~~A~~~g~---~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~~~~~~ 154 (351)
T 3utm_A 83 DVHAK-DKGGLVPLHNACSYGH---YEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH----GADPTLVN 154 (351)
T ss_dssp CTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TCCTTCCC
T ss_pred CCCcc-CCCCCcHHHHHHHCCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CCCCcccc
Confidence 99999 9999999999999999 9999999999999999999999999999999999999888775 33222111
Q ss_pred cccccccc---------------------------------------cccCCCCCCCCChhchhHhcCCC---ch----h
Q 004911 179 SGAEHNLT---------------------------------------VSIGSSNSDYSSPLLTASASGSP---PS----P 212 (724)
Q Consensus 179 a~~~~~l~---------------------------------------~~in~~d~~G~TPLh~Aa~~G~~---ei----V 212 (724)
..+...+. ......+..|.||||+|+..++. ++ +
T Consensus 155 ~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll 234 (351)
T 3utm_A 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLL 234 (351)
T ss_dssp TTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHH
T ss_pred CCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHH
Confidence 11111100 01123567889999999999654 45 4
Q ss_pred hhhcCCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911 213 SRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR 265 (724)
Q Consensus 213 e~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~ 265 (724)
+.+++.+..+..|.||||+|+..|+.++++.|++.|++++..|..|.++++.+
T Consensus 235 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A 287 (351)
T 3utm_A 235 RKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287 (351)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred HcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 45567778899999999999999999999999999999999999999999886
No 33
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.96 E-value=5.3e-28 Score=243.65 Aligned_cols=189 Identities=23% Similarity=0.248 Sum_probs=169.5
Q ss_pred cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911 13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI 92 (724)
Q Consensus 13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL 92 (724)
.+.+.+++..+.+|.||||+|+..|++++|++|++ .|++++.. +..|.||||+|+..|+.+++++|
T Consensus 31 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~L 96 (237)
T 3b7b_A 31 VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIK-AGALVDPK-------------DAEGSTCLHLAAKKGHYEVVQYL 96 (237)
T ss_dssp HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT-TTCCCCCC-------------CTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHh-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHH
Confidence 44577888999999999999999999999999999 78888876 57899999999999999999999
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911 93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN 172 (724)
Q Consensus 93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga 172 (724)
++.+.++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ .|+
T Consensus 97 l~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~----~g~ 168 (237)
T 3b7b_A 97 LSNGQMDVNCQ-DDGGWTPMIWATEYKH---VDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA----AKC 168 (237)
T ss_dssp HTTTCCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT----TTC
T ss_pred HhCCCCCcccC-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH----cCC
Confidence 99933899998 9999999999999999 999999999999999999999999999999999888876665 342
Q ss_pred CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCC
Q 004911 173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREY 238 (724)
Q Consensus 173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~ 238 (724)
+++..|..|.||||+|+..|+.+++++| ++.+.++..|.||||+|+..++.
T Consensus 169 ---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 169 ---------------DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp ---------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHH
T ss_pred ---------------CCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHH
Confidence 4567789999999999999999996655 46667889999999999998865
No 34
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.95 E-value=7.8e-29 Score=248.17 Aligned_cols=210 Identities=18% Similarity=0.157 Sum_probs=181.9
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911 19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 98 (724)
Q Consensus 19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 98 (724)
++..|..+.|+|+.|+..|++++|++|++ .|.+++.. +..|.||||+|+..|+.++|++|+++ |+
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~ 66 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVE-AGYDVRQP-------------DKENVTLLHWAAINNRIDLVKYYISK-GA 66 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHH-cCCCcCCC-------------CCCCCCHHHHHHHhCCHHHHHHHHHc-CC
Confidence 45567889999999999999999999999 78888876 57899999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhh
Q 004911 99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA 178 (724)
Q Consensus 99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~a 178 (724)
+++...+..|.||||+|+..|+ .+++++|+++|++++..|..|.||||+|+..|+.++++.|++. ++
T Consensus 67 ~~~~~~~~~~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~----~~------ 133 (240)
T 3eu9_A 67 IVDQLGGDLNSTPLHWATRQGH---LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK----GQ------ 133 (240)
T ss_dssp CTTCCBTTTTBCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TC------
T ss_pred cchhhcCCcCCChhHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc----CC------
Confidence 9987756679999999999999 9999999999999999999999999999999999988877763 32
Q ss_pred cccccccccccCCCCCCCCChhchhHhcCC-Cchhhh----hcCCCcccc-CCCCccccccccCCCCCCCCCCccccccc
Q 004911 179 SGAEHNLTVSIGSSNSDYSSPLLTASASGS-PPSPSR----LVSSPMALK-FNDVSFGTGAEKREYPIDPSLPDIKNSIY 252 (724)
Q Consensus 179 a~~~~~l~~~in~~d~~G~TPLh~Aa~~G~-~eiVe~----Lad~~a~~~-~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~ 252 (724)
+++..+..|.||||+|+..++ .++++. +++.+..+. .|.||||+|+..++.++++.|++.|++++
T Consensus 134 ---------~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 204 (240)
T 3eu9_A 134 ---------DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVD 204 (240)
T ss_dssp ---------CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT
T ss_pred ---------CccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 455678889999999997776 566444 445566665 78899999999999999999999999999
Q ss_pred cccccccccceee
Q 004911 253 ATDEFRMFSFKIR 265 (724)
Q Consensus 253 ~~D~~g~~~fkV~ 265 (724)
..|..+.++++++
T Consensus 205 ~~~~~g~t~l~~A 217 (240)
T 3eu9_A 205 AQNIKGESALDLA 217 (240)
T ss_dssp CBCTTSCBHHHHH
T ss_pred CcCCCCCCHHHHH
Confidence 9999988888876
No 35
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.95 E-value=7.7e-28 Score=240.63 Aligned_cols=182 Identities=16% Similarity=0.137 Sum_probs=159.7
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCC--CCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911 19 STAETEDSFTSMLELASNNDVEGFKRMLERDP--SSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS 96 (724)
Q Consensus 19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~g--adIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~ 96 (724)
.+..+.+|.||||+|+..|+.++|++|++ .+ .+++.. .+..|+||||+|+..|+.+++++|+++
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~~------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~- 94 (228)
T 2dzn_A 29 LLQKDQDGRIPLHWSVSFQAHEITSFLLS-KMENVNLDDY------------PDDSGWTPFHIACSVGNLEVVKSLYDR- 94 (228)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TCTTCCGGGC------------CCTTSCCHHHHHHHHCCHHHHHHHHSS-
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHHh-cccccccccc------------CCCCCCCHHHHHHHcCCHHHHHHHHhC-
Confidence 34478899999999999999999999999 67 444431 257899999999999999999999999
Q ss_pred C--CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCc
Q 004911 97 S--ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSS 174 (724)
Q Consensus 97 G--ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~ 174 (724)
| ++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ .|.
T Consensus 95 g~~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~-- 164 (228)
T 2dzn_A 95 PLKPDLNKI-TNQGVTCLHLAVGKKW---FEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG----LGK-- 164 (228)
T ss_dssp SSCCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT----TTC--
T ss_pred CCCcccccC-CcCCCCHHHHHHHcCC---HhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh----cCc--
Confidence 7 899998 9999999999999999 999999999999999999999999999999999988887665 331
Q ss_pred hhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh-----hcCCCccccCCCCccccccccC
Q 004911 175 VVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR-----LVSSPMALKFNDVSFGTGAEKR 236 (724)
Q Consensus 175 ~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~-----Lad~~a~~~~g~TpLh~Aa~~g 236 (724)
.+++..|..|.||||+|+..|+.+++++ +++.+..+..|.||+++|...+
T Consensus 165 ------------~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 165 ------------SAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp ------------CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred ------------ccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence 1567789999999999999999998554 5577889999999999997653
No 36
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.95 E-value=6.1e-29 Score=270.65 Aligned_cols=203 Identities=14% Similarity=0.128 Sum_probs=179.8
Q ss_pred ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911 14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL 93 (724)
Q Consensus 14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL 93 (724)
+.+++++..|.+|.||||+|+..|+.++|++||+ .|++++.. +..|.||||+||..|+.++|++||
T Consensus 154 ~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~-~ga~~~~~-------------~~~g~t~L~~A~~~g~~~~v~~Ll 219 (373)
T 2fo1_E 154 AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMK-AGADPTIY-------------NKSERSALHQAAANRDFGMMVYML 219 (373)
T ss_dssp HTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTCCCHHHHHHHTTCHHHHHHHT
T ss_pred hcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHH-CCCCCccc-------------CCCCCCHHHHHHHCCCHHHHHHHH
Confidence 5688899999999999999999999999999999 89999876 588999999999999999999999
Q ss_pred hcCC---CCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC--------CCCCCCcHHHHHhcCCCHHHHHH
Q 004911 94 LHSS---ADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC--------VDANGHHPIDVIVLPPKLDSMRA 162 (724)
Q Consensus 94 e~~G---ADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~--------~D~~G~TPLhlAa~~G~~eivk~ 162 (724)
++ + ++++.. +..|.||||+|+..+.....+++++|+++|++++. .|..|.||||+|+..|+.++++.
T Consensus 220 ~~-~~~~~~~~~~-d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~ 297 (373)
T 2fo1_E 220 NS-TKLKGDIEEL-DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKY 297 (373)
T ss_dssp TS-HHHHHTTSCC-CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHH
T ss_pred hc-CccccChhhc-CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHH
Confidence 98 6 899998 99999999999999832229999999999999986 67799999999999999999998
Q ss_pred HHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCC
Q 004911 163 ILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREY 238 (724)
Q Consensus 163 LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~ 238 (724)
|++. .+ .+++..|..|.||||+|+..|+.++|++| ++.+..+..|.|||++|+..|+.
T Consensus 298 Ll~~---~~---------------~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~ 359 (373)
T 2fo1_E 298 LVGE---KG---------------SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH 359 (373)
T ss_dssp HHHH---SC---------------CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH
T ss_pred HHHh---cC---------------CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCH
Confidence 8874 11 15677899999999999999999996665 46678889999999999999999
Q ss_pred CCCCCCCccccc
Q 004911 239 PIDPSLPDIKNS 250 (724)
Q Consensus 239 ~i~~~L~d~ga~ 250 (724)
+++..|++.+++
T Consensus 360 ~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 360 NIVDIFDRCRPE 371 (373)
T ss_dssp HHHHHHHTTC--
T ss_pred HHHHHHHhcCcc
Confidence 999988877654
No 37
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.95 E-value=2.5e-28 Score=251.26 Aligned_cols=181 Identities=16% Similarity=0.142 Sum_probs=149.0
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911 19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 98 (724)
Q Consensus 19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 98 (724)
++..+..|.||||+||..|++++|++||+ .|++++.. +..|+||||+|+..|+.++|++||++ |+
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~tpL~~A~~~~~~~~v~~Ll~~-~~ 102 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYA-AGAGVLVA-------------ERGGHTALHLACRVRAHTCACVLLQP-RP 102 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCSSCC-------------CTTSCCHHHHHTTTTCHHHHHHHSSS-CC
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCcchhHhhhcc-CC
Confidence 77889999999999999999999999999 89999876 58899999999999999999999997 65
Q ss_pred C-----------------------------------------------cccccCCCCCcHHHHHHhCCCCCHHHHHHHHH
Q 004911 99 D-----------------------------------------------VNVSCGSDRTTALHCAASGGSANVVDVVRLLL 131 (724)
Q Consensus 99 D-----------------------------------------------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLL 131 (724)
+ ++.. +..|.||||+|+..|+ .++|++||
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~t~L~~A~~~g~---~~~v~~Ll 178 (282)
T 1oy3_D 103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE-NYDGHTPLHVAVIHKD---AEMVRLLR 178 (282)
T ss_dssp SSCCCC-----------------------------------CCCGGGGTTCC-CTTSCCHHHHHHHTTC---HHHHHHHH
T ss_pred CCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc-CCCCcCHHHHHHHcCC---HHHHHHHH
Confidence 4 6777 8899999999999999 99999999
Q ss_pred HCCCCCCCCCCC-CCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCc
Q 004911 132 SAGADPDCVDAN-GHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPP 210 (724)
Q Consensus 132 e~GAd~n~~D~~-G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~e 210 (724)
++|++++..+.. |+||||+|+..|+.++++.|++. |+ +++.+|..|.||||+|+..|+.+
T Consensus 179 ~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----ga---------------d~~~~d~~g~tpL~~A~~~~~~~ 239 (282)
T 1oy3_D 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA----GA---------------DPTARMYGGRTPLGSALLRPNPI 239 (282)
T ss_dssp HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHHHTSSCHH
T ss_pred HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc----CC---------------CCcccccCCCCHHHHHHHcCCcH
Confidence 999999999864 99999999999999988877763 43 56678999999999999999999
Q ss_pred hhh----hhcCCCccccCCCCccccccccCC
Q 004911 211 SPS----RLVSSPMALKFNDVSFGTGAEKRE 237 (724)
Q Consensus 211 iVe----~Lad~~a~~~~g~TpLh~Aa~~g~ 237 (724)
+++ ++++.+.++..|.|||++|.....
T Consensus 240 ~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 240 LARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHHHHTTCCCCCCC---------------
T ss_pred HHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 855 456777889999999999876653
No 38
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.95 E-value=4.1e-28 Score=244.03 Aligned_cols=184 Identities=18% Similarity=0.191 Sum_probs=159.5
Q ss_pred cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911 15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL 94 (724)
Q Consensus 15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe 94 (724)
.+.+++..|.+|.||||+|+..|+.++|++||+ .+.++... .....+.+|+||||+||..|+.++|++||+
T Consensus 26 ~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~--------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 96 (232)
T 2rfa_A 26 EGCEVHQRGAMGETALHIAALYDNLEAAMVLME-AAPELVFE--------PMTSELYEGQTALHIAVINQNVNLVRALLA 96 (232)
T ss_dssp TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HCGGGGGC--------CCCSTTTTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH-cCchhccc--------cccccCCCCcCHHHHHHHcCCHHHHHHHHh
Confidence 377889999999999999999999999999999 56654321 112236789999999999999999999999
Q ss_pred cCCCCcccccCC-------------CCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHH
Q 004911 95 HSSADVNVSCGS-------------DRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMR 161 (724)
Q Consensus 95 ~~GADVN~~~d~-------------~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk 161 (724)
+ |++++.. +. .|.||||+|+..|+ .++|++||++|++++.+|..|+||||+|+..|+.++++
T Consensus 97 ~-g~~~~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~ 171 (232)
T 2rfa_A 97 R-GASVSAR-ATGSVFHYRPHNLIYYGEHPLSFAACVGS---EEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFAC 171 (232)
T ss_dssp T-TCCTTCC-CCSGGGSCCTTCSCCCCSSHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHH
T ss_pred C-CCCCCcc-cCCcceeecccccccCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHH
Confidence 9 9999987 54 79999999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCcc
Q 004911 162 AILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMA 221 (724)
Q Consensus 162 ~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~ 221 (724)
.+++.|++.|++.. .....+..|..|.||||+|+..|+.+++++|++.+..
T Consensus 172 ~i~~~Ll~~g~~~~---------~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 172 QMYNLLLSYDGGDH---------LKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHHHHTTCSCS---------SCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchh---------hhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 99999998885321 1112257789999999999999999999999877643
No 39
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.95 E-value=1.5e-28 Score=257.62 Aligned_cols=197 Identities=21% Similarity=0.244 Sum_probs=169.7
Q ss_pred cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911 13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI 92 (724)
Q Consensus 13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL 92 (724)
.+.+.+++..|.+|.||||+|+..|+.++|++|++ .|++++.. +..|+||||+|+..|+.++|++|
T Consensus 79 l~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~L 144 (285)
T 3d9h_A 79 ISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK-HGAQVNGV-------------TADWHTPLFNACVSGSWDCVNLL 144 (285)
T ss_dssp HHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHH-TTCCSSCC-------------CTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCHHHHHHHH
Confidence 34577889999999999999999999999999999 78998876 58999999999999999999999
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911 93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN 172 (724)
Q Consensus 93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga 172 (724)
|++ |++++.. .+|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++. |+
T Consensus 145 l~~-g~~~~~~--~~g~t~L~~A~~~g~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~----ga 214 (285)
T 3d9h_A 145 LQH-GASVQPE--SDLASPIHEAARRGH---VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES----GA 214 (285)
T ss_dssp HHT-TCCSSCS--CTTSCHHHHHHHHTC---HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT----TC
T ss_pred HHC-CCCCCCC--CCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC----CC
Confidence 999 9999875 569999999999999 9999999999999999999999999999999999999887763 32
Q ss_pred CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCcc-
Q 004911 173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDI- 247 (724)
Q Consensus 173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~- 247 (724)
+++ .+..|.||||+|+..|+.+++++| ++.+.++..|.|||++|+. +.+++..|++.
T Consensus 215 ---------------~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~~ 276 (285)
T 3d9h_A 215 ---------------DVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLERE 276 (285)
T ss_dssp ---------------CTT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHHC
T ss_pred ---------------CCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHhh
Confidence 233 378899999999999999995555 5677889999999999993 45666666555
Q ss_pred cccc
Q 004911 248 KNSI 251 (724)
Q Consensus 248 ga~i 251 (724)
++++
T Consensus 277 ~a~l 280 (285)
T 3d9h_A 277 GASL 280 (285)
T ss_dssp ----
T ss_pred ccCC
Confidence 4433
No 40
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=3.2e-29 Score=259.32 Aligned_cols=208 Identities=15% Similarity=0.155 Sum_probs=164.7
Q ss_pred CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhc---CCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHH
Q 004911 17 NNSTAETEDSFTSMLELASNNDVEGFKRMLER---DPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLK 90 (724)
Q Consensus 17 ~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~---~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVk 90 (724)
+..+..|..|.||||+||..|++++|+.||+. .+.+++... ...+..|+||||+||.+ |+.++|+
T Consensus 4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~---------~~~~~~g~tpL~~A~~~~~~g~~~~v~ 74 (273)
T 2pnn_A 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSE---------FKDPETGKTCLLKAMLNLHNGQNDTIA 74 (273)
T ss_dssp -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGG---------GSCTTTCCCHHHHHHHSCBTTBCHHHH
T ss_pred ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcc---------cccCcCCCCHHHHHHHHHhcCChHHHH
Confidence 34556788999999999999999999999973 566665321 11257899999999987 9999999
Q ss_pred HHHhcCCCC-------ccc----ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC--------------CCC
Q 004911 91 LILLHSSAD-------VNV----SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA--------------NGH 145 (724)
Q Consensus 91 lLLe~~GAD-------VN~----~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~--------------~G~ 145 (724)
+||++ |++ +|. . +..|+||||+|+..|+ .++|++||++|++++.+|. .|.
T Consensus 75 ~Ll~~-ga~~~~~~~~i~~~~~~~-d~~g~tpL~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~ 149 (273)
T 2pnn_A 75 LLLDV-ARKTDSLKQFVNASYTDS-YYKGQTALHIAIERRN---MTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGE 149 (273)
T ss_dssp HHHHH-HHHTTCHHHHHTCCCCST-TTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCB
T ss_pred HHHHh-hccccchhHHhhcccccc-cCCCCCHHHHHHHcCC---HHHHHHHHHCCCCcCccccccccccccccccccCCC
Confidence 99999 776 333 3 6689999999999999 9999999999999999997 799
Q ss_pred cHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCC---------Cchhhhh-
Q 004911 146 HPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS---------PPSPSRL- 215 (724)
Q Consensus 146 TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~---------~eiVe~L- 215 (724)
||||+|+..|+.++++.|++... .|+ +++.+|..|+||||+|+..|+ .++++.|
T Consensus 150 tpL~~A~~~g~~~~v~~Ll~~~~-~ga---------------d~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll 213 (273)
T 2pnn_A 150 LPLSLAACTNQLAIVKFLLQNSW-QPA---------------DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEIL 213 (273)
T ss_dssp SHHHHHHHTTCHHHHHHHHHCSS-CCC---------------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhccc-CCC---------------CceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHH
Confidence 99999999999998887766100 332 567789999999999999988 4655544
Q ss_pred ---cCCC-------ccccCCCCccccccccCCCCCCCCCCcccc-ccccc
Q 004911 216 ---VSSP-------MALKFNDVSFGTGAEKREYPIDPSLPDIKN-SIYAT 254 (724)
Q Consensus 216 ---ad~~-------a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga-~i~~~ 254 (724)
++.+ ..+..|.||||+|+..|+.++++.|++.|+ +....
T Consensus 214 ~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~ 263 (273)
T 2pnn_A 214 ILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECR 263 (273)
T ss_dssp HHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-----
T ss_pred HhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhh
Confidence 4554 478899999999999999999999999988 44333
No 41
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=3.8e-29 Score=256.04 Aligned_cols=197 Identities=18% Similarity=0.130 Sum_probs=164.5
Q ss_pred CchHHHHHHHcCCHHHH----HHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCCC
Q 004911 26 SFTSMLELASNNDVEGF----KRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLKLILLHSSA 98 (724)
Q Consensus 26 g~TpLh~AA~~G~le~V----k~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVklLLe~~GA 98 (724)
|.||||.||..|++++| ++|++ .|++++... ...|.+|+||||+||.. |+.++|++||+. |+
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~-~g~~i~~~~---------~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~ 70 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRW-NSKYLTDSA---------YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI-DK 70 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHH-HTCCTTSGG---------GSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH-HH
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHH-cCCCccccc---------ccCCCCCCCHHHHHHHccccchHHHHHHHHhc-CC
Confidence 78999999999999854 55555 788888711 01268999999999999 999999999999 88
Q ss_pred Cccccc----------CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCC-------------CCcHHHHHhcCC
Q 004911 99 DVNVSC----------GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDAN-------------GHHPIDVIVLPP 155 (724)
Q Consensus 99 DVN~~~----------d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~-------------G~TPLhlAa~~G 155 (724)
+++... |..|.||||+|+..|+ .++|++||++|++++.+|.. |.||||+|+..|
T Consensus 71 ~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~ 147 (256)
T 2etb_A 71 DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS---LQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147 (256)
T ss_dssp HTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTT
T ss_pred cccchhhhcccccccccccCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcC
Confidence 877431 3679999999999999 99999999999999999986 999999999999
Q ss_pred CHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHh--cCCCc-------hhhhh----cCC----
Q 004911 156 KLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASA--SGSPP-------SPSRL----VSS---- 218 (724)
Q Consensus 156 ~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~--~G~~e-------iVe~L----ad~---- 218 (724)
+.++++.|++.. ..|+ +++..|..|+||||+|+. .++.+ +++.| ++.
T Consensus 148 ~~~~v~~Ll~~~-~~ga---------------~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~ 211 (256)
T 2etb_A 148 QWDVVTYLLENP-HQPA---------------SLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTV 211 (256)
T ss_dssp CHHHHHHHHHCS-SCCC---------------CTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHhcc-ccCC---------------CcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccc
Confidence 998888776610 0332 567889999999999999 77776 65554 455
Q ss_pred ---CccccCCCCccccccccCCCCCCCCCCccccccc
Q 004911 219 ---PMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIY 252 (724)
Q Consensus 219 ---~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~ 252 (724)
+..+..|.||||+|+..|+.++++.|++.|....
T Consensus 212 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 212 QLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 7889999999999999999999999988876543
No 42
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.95 E-value=5.8e-28 Score=241.84 Aligned_cols=203 Identities=19% Similarity=0.239 Sum_probs=174.5
Q ss_pred ccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHH
Q 004911 12 TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL 91 (724)
Q Consensus 12 ~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVkl 91 (724)
..+.+.+++..+..|.||||+|+..|++++|++|++ .+.+++... +..|.||||+|+..|+.++|++
T Consensus 28 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~~------------~~~~~t~L~~A~~~~~~~~v~~ 94 (240)
T 3eu9_A 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS-KGAIVDQLG------------GDLNSTPLHWATRQGHLSMVVQ 94 (240)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCCB------------TTTTBCHHHHHHHHTCHHHHHH
T ss_pred HHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHH-cCCcchhhc------------CCcCCChhHHHHHcCCHHHHHH
Confidence 344677888999999999999999999999999999 777777553 4568999999999999999999
Q ss_pred HHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC-HHHHHHHHHHHHcC
Q 004911 92 ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK-LDSMRAILEEVFGS 170 (724)
Q Consensus 92 LLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~-~eivk~LLe~Ll~~ 170 (724)
|++. |++++.. +..|.||||+|+..|+ .+++++|+++|++++..|..|.||||+|+..++ .++++.|++ .
T Consensus 95 Ll~~-g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~----~ 165 (240)
T 3eu9_A 95 LMKY-GADPSLI-DGEGCSCIHLAAQFGH---TSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT----F 165 (240)
T ss_dssp HHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH----T
T ss_pred HHHc-CCCCccc-CCCCCCHHHHHHHcCH---HHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHh----c
Confidence 9999 9999998 9999999999999999 999999999999999999999999999996665 666665555 3
Q ss_pred CCCchhhhcccccccccccCCCCC-CCCChhchhHhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCC
Q 004911 171 KNSSVVVASGAEHNLTVSIGSSNS-DYSSPLLTASASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLP 245 (724)
Q Consensus 171 ga~~~~~aa~~~~~l~~~in~~d~-~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~ 245 (724)
++ +++..+. .|.||||+|+..|+.++++.| ++.+..+..|.|||++|+..++.++++.|+
T Consensus 166 ~~---------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~ 230 (240)
T 3eu9_A 166 NV---------------SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230 (240)
T ss_dssp TC---------------CTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH
T ss_pred CC---------------CcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 32 3445565 899999999999999995555 567788899999999999999999999888
Q ss_pred cccccc
Q 004911 246 DIKNSI 251 (724)
Q Consensus 246 d~ga~i 251 (724)
+.+...
T Consensus 231 ~~~~~~ 236 (240)
T 3eu9_A 231 EARQAK 236 (240)
T ss_dssp HHC---
T ss_pred Hhhhcc
Confidence 776543
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.95 E-value=4.3e-27 Score=237.84 Aligned_cols=181 Identities=18% Similarity=0.174 Sum_probs=157.5
Q ss_pred CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911 17 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS 96 (724)
Q Consensus 17 ~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~ 96 (724)
.+++..+..|.||||+|+..|+.++|++||+ .|++++.. +..|+||||+|+..|+.++|++|++.
T Consensus 36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~- 100 (236)
T 1ikn_D 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLG-AGCDPELR-------------DFRGNTPLHLACEQGCLASVGVLTQS- 100 (236)
T ss_dssp CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCS-CCCCSCCC-------------CTTCCCHHHHHHHHTCHHHHHHHHHS-
T ss_pred HHhhccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHhc-
Confidence 3688999999999999999999999999999 88998876 58999999999999999999999998
Q ss_pred CCC------cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCC-CCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911 97 SAD------VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDA-NGHHPIDVIVLPPKLDSMRAILEEVFG 169 (724)
Q Consensus 97 GAD------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~-~G~TPLhlAa~~G~~eivk~LLe~Ll~ 169 (724)
|++ ++.. +..|.||||+|+..|+ .++|++||++|++++.+|. .|+||||+|+..|+.++++.|++
T Consensus 101 ~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~---- 172 (236)
T 1ikn_D 101 CTTPHLHSILKAT-NYNGHTCLHLASIHGY---LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK---- 172 (236)
T ss_dssp TTTTSSSCGGGCC-CTTCCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT----
T ss_pred ccchhHHHHhhcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----
Confidence 765 5666 8899999999999999 9999999999999999998 99999999999999888887665
Q ss_pred CCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc------cccCCCCcccccccc
Q 004911 170 SKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM------ALKFNDVSFGTGAEK 235 (724)
Q Consensus 170 ~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a------~~~~g~TpLh~Aa~~ 235 (724)
.|+ +++..|..|.||||+|+..|+.+++++|+..++ .+..+.|+.+.+...
T Consensus 173 ~ga---------------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 229 (236)
T 1ikn_D 173 CGA---------------DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF 229 (236)
T ss_dssp TTC---------------CSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred cCC---------------CCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence 443 566778999999999999999999988887774 344566666655443
No 44
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.94 E-value=1.9e-27 Score=254.51 Aligned_cols=178 Identities=16% Similarity=0.057 Sum_probs=132.9
Q ss_pred ccCCCCCC-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCC---HHHH
Q 004911 14 DMNNNSTA-ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS---VDVL 89 (724)
Q Consensus 14 ~m~~di~~-~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~---~evV 89 (724)
+.+++++. .|.+|.||||+||..|++++|++||+ .|++++.. +.+|+||||+||.+|+ .+++
T Consensus 118 ~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~Gad~n~~-------------d~~g~TpLh~A~~~g~~~~~~~~ 183 (327)
T 1sw6_A 118 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYG-------------DNMGESCLVKAVKSVNNYDSGTF 183 (327)
T ss_dssp TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTBC-------------CTTCCCHHHHHHHSSHHHHTTCH
T ss_pred hcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHhcccccHHHH
Confidence 45677888 78888899999999999999998888 78888876 5788899999988888 7888
Q ss_pred HHHHhcCCCCcccccCCCCCcHHHHHHh----CCCCCHHHHHHHHHHC--------------------CCCCCCCCCCCC
Q 004911 90 KLILLHSSADVNVSCGSDRTTALHCAAS----GGSANVVDVVRLLLSA--------------------GADPDCVDANGH 145 (724)
Q Consensus 90 klLLe~~GADVN~~~d~~G~TPLH~Aa~----~G~~~~~eiVklLLe~--------------------GAd~n~~D~~G~ 145 (724)
+.||+..+++++.. +..|+||||+|+. .|+ .+++++||+. |++++.+|..|.
T Consensus 184 ~~ll~~~~~~~~~~-d~~g~tpLh~A~~~~~~~g~---~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~ 259 (327)
T 1sw6_A 184 EALLDYLYPCLILE-DSMNRTILHHIIITSGMTGC---SAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERK 259 (327)
T ss_dssp HHHHHHHGGGGGEE-CTTCCCHHHHHHHHHTSTTC---HHHHHHHHHHHHHHHHHGGGCCEEEC----------------
T ss_pred HHHHHhhhccccCC-CCCCCCHHHHHHHHcccccc---HHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCC
Confidence 88888734788888 8888899999888 788 8888888876 888888888888
Q ss_pred cHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhh----hcCCCcc
Q 004911 146 HPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSR----LVSSPMA 221 (724)
Q Consensus 146 TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~----Lad~~a~ 221 (724)
||||+|+. ++.|++. +++.+|..|+||||+|+..|+.++|++ +++++++
T Consensus 260 t~L~~a~~------~~~Ll~~---------------------~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~ 312 (327)
T 1sw6_A 260 DSILENLD------LKWIIAN---------------------MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA 312 (327)
T ss_dssp CHHHHHCS------HHHHHHH---------------------TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred ChhHHHHH------HHHHHHh---------------------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence 99988885 5555553 356678888999999999998888554 4566778
Q ss_pred ccCCCCccccccccC
Q 004911 222 LKFNDVSFGTGAEKR 236 (724)
Q Consensus 222 ~~~g~TpLh~Aa~~g 236 (724)
+..|.||||+|+..|
T Consensus 313 d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 313 NKSGLRPVDFGAGLE 327 (327)
T ss_dssp CTTSCCGGGGTCC--
T ss_pred CCCCCCHHHHHHhcC
Confidence 888999999888764
No 45
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=5.4e-28 Score=246.45 Aligned_cols=187 Identities=18% Similarity=0.104 Sum_probs=162.4
Q ss_pred CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 004911 20 TAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD 99 (724)
Q Consensus 20 ~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD 99 (724)
+..+.++.|+||.||..|++++|++||+ .|++++.. |..|+||||+||..|+.++|++||+. |++
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~ 79 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVK-EMNDPSQP-------------NEEGITALHNAICGANYSIVDFLITA-GAN 79 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHH-HSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCC
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHh-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHC-CCC
Confidence 4456778899999999999999999999 78888876 68999999999999999999999999 999
Q ss_pred cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--hcCCCHHHHHHHHHHHHcCCCCchh
Q 004911 100 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVI--VLPPKLDSMRAILEEVFGSKNSSVV 176 (724)
Q Consensus 100 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlA--a~~G~~eivk~LLe~Ll~~ga~~~~ 176 (724)
+|.. |..|+||||+|+..|+ .++|++||++|++++.++ ..|+||||+| +..|+.++++.|++...
T Consensus 80 ~n~~-d~~g~tpLh~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga-------- 147 (229)
T 2vge_A 80 VNSP-DSHGWTPLHCAASCND---TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQ-------- 147 (229)
T ss_dssp TTCC-CTTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH--------
T ss_pred CCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC--------
Confidence 9999 9999999999999999 999999999999999987 6999999999 99999999999888643
Q ss_pred hhcccccccccccCCCCCCCCChhchhHhcCCCch-hhhhcC--CCccccCCCCccccccccCCCCCCCCC
Q 004911 177 VASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPS-PSRLVS--SPMALKFNDVSFGTGAEKREYPIDPSL 244 (724)
Q Consensus 177 ~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~ei-Ve~Lad--~~a~~~~g~TpLh~Aa~~g~~~i~~~L 244 (724)
+++..|..|.|||+.++.....++ ++.+++ .+.++..|+||||+|+..|+.++++.+
T Consensus 148 -----------~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 148 -----------SMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp -----------HTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred -----------CcccccCCchHHHHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceeehh
Confidence 344456778899986665554444 666666 556788899999999999998888653
No 46
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=2.1e-27 Score=232.86 Aligned_cols=162 Identities=15% Similarity=0.145 Sum_probs=149.1
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911 19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 98 (724)
Q Consensus 19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 98 (724)
++..|.+|.||||+||..|+.++|++|++ .+.+++.. +..|+||||+|+..|+.++|++||++ |+
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~ 92 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVE-NFDKLEDK-------------DIEGSTALIWAVKNNRLGIAEKLLSK-GS 92 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHH-HHCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHH-hccccccc-------------cccCccHHHHHHHcCCHHHHHHHHHC-CC
Confidence 56789999999999999999999999999 67888776 57899999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhh
Q 004911 99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVA 178 (724)
Q Consensus 99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~a 178 (724)
+++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++. |+
T Consensus 93 ~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga------ 158 (192)
T 2rfm_A 93 NVNTK-DFSGKTPLMWSIIFGY---SEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL----GA------ 158 (192)
T ss_dssp CTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TC------
T ss_pred CCCCC-CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC----CC------
Confidence 99999 9999999999999999 9999999999999999999999999999999999888877763 43
Q ss_pred cccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCC
Q 004911 179 SGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS 218 (724)
Q Consensus 179 a~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~ 218 (724)
+++..|..|.||||+|+..|+.+++++|++.
T Consensus 159 ---------~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 159 ---------DISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp ---------CTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------CCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 4567789999999999999999999988754
No 47
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.94 E-value=1.2e-26 Score=227.69 Aligned_cols=169 Identities=21% Similarity=0.243 Sum_probs=152.0
Q ss_pred ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911 14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL 93 (724)
Q Consensus 14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL 93 (724)
.-..+++..|.+|.||||+|+..|++++|++||+ .|++++.. +..|.||||+|+..|+.+++++||
T Consensus 27 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~l~~A~~~~~~~~~~~Ll 92 (201)
T 3hra_A 27 DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALID-RGADINLQ-------------NSISDSPYLYAGAQGRTEILAYML 92 (201)
T ss_dssp CTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHH
Confidence 3445788899999999999999999999999999 79999876 588999999999999999999999
Q ss_pred hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCC-CCCCCCCCCCCcHHHHHhcCCC-----HHHHHHHHHHH
Q 004911 94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAG-ADPDCVDANGHHPIDVIVLPPK-----LDSMRAILEEV 167 (724)
Q Consensus 94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~G-Ad~n~~D~~G~TPLhlAa~~G~-----~eivk~LLe~L 167 (724)
+..+++++.. +..|.||||+|+..|+ .+++++||++| ++++.+|..|+||||+|+..++ .++++.|++
T Consensus 93 ~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~-- 166 (201)
T 3hra_A 93 KHATPDLNKH-NRYGGNALIPAAEKGH---IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME-- 166 (201)
T ss_dssp HHSCCCTTCC-CTTSCCSHHHHHHTTC---HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH--
T ss_pred hccCcccccc-cCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH--
Confidence 7668899998 9999999999999999 99999999998 9999999999999999999887 666665555
Q ss_pred HcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911 168 FGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 219 (724)
Q Consensus 168 l~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~ 219 (724)
.|+ +++..|..|.||||+|+..|+.++++.|++.+
T Consensus 167 --~ga---------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 167 --NGA---------------DQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp --TTC---------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred --CCC---------------CCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 453 45677899999999999999999999988754
No 48
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=7.3e-27 Score=221.86 Aligned_cols=159 Identities=21% Similarity=0.267 Sum_probs=144.1
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911 24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS 103 (724)
Q Consensus 24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~ 103 (724)
+...|+||.|+..|++++|++||+ .|.+++.. +..|+||||+|+. |+.++|++||++ |++++..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~-g~~~~~~ 66 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQ-NNVNVNAQ-------------NGFGRTALQVMKL-GNPEIARRLLLR-GANPDLK 66 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCC-------------CTTSCCHHHHCCS-SCHHHHHHHHHT-TCCTTCC
T ss_pred chHhhHHHHHHHcCCHHHHHHHHh-CCCCcccc-------------CccCccHHHHHHc-CcHHHHHHHHHc-CCCCCCC
Confidence 356799999999999999999999 78888876 5889999999999 999999999999 9999999
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccc
Q 004911 104 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEH 183 (724)
Q Consensus 104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~ 183 (724)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+.++++.|++. |++
T Consensus 67 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~~---------- 128 (162)
T 1ihb_A 67 -DRTGFAVIHDAARAGF---LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH----TAS---------- 128 (162)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH----SCC----------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc----cCC----------
Confidence 9999999999999999 9999999999999999999999999999999999999888775 221
Q ss_pred ccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc
Q 004911 184 NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM 220 (724)
Q Consensus 184 ~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a 220 (724)
.++..|..|.||||+|+..|+.+++++|++.++
T Consensus 129 ----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 129 ----NVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp ----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred ----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 246778899999999999999999999988764
No 49
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.8e-26 Score=222.29 Aligned_cols=160 Identities=22% Similarity=0.318 Sum_probs=144.7
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911 22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN 101 (724)
Q Consensus 22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN 101 (724)
....+.|+|++||..|++++|++||+ .|.+++.. +..|.||||+||..|+.++|++||++ |++++
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~ 74 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMA-NGADVNAE-------------DASGWTPLHLAAFNGHLEIVEVLLKN-GADVN 74 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence 34567899999999999999999999 78998876 58899999999999999999999999 99999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccc
Q 004911 102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA 181 (724)
Q Consensus 102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~ 181 (724)
.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++. |+
T Consensus 75 ~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----g~--------- 137 (169)
T 2y1l_E 75 AV-DHAGMTPLRLAALFGH---LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN----GA--------- 137 (169)
T ss_dssp CC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TC---------
T ss_pred cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CC---------
Confidence 99 9999999999999999 9999999999999999999999999999999999988877763 42
Q ss_pred ccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911 182 EHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 219 (724)
Q Consensus 182 ~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~ 219 (724)
+++..|..|.||||+|+..|+.+++++|++.+
T Consensus 138 ------~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 138 ------DVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp ------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred ------CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 45677899999999999999999999887653
No 50
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=1.3e-26 Score=221.36 Aligned_cols=161 Identities=25% Similarity=0.328 Sum_probs=143.4
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911 22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN 101 (724)
Q Consensus 22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN 101 (724)
.+.++.|+||.|+..|++++|+.|++..+.+++.. +..|+||||+||..|+.++|++||++ |++++
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~ 69 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDI-------------EGRQSTPLHFAAGYNRVSVVEYLLQH-GADVH 69 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCT-------------TTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTT
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCcccc-------------ccCCCCHHHHHHHcChHHHHHHHHhc-CCCCC
Confidence 46788999999999999999999999766666655 57899999999999999999999999 99999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccc
Q 004911 102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGA 181 (724)
Q Consensus 102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~ 181 (724)
.. +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++. |+
T Consensus 70 ~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga--------- 132 (165)
T 3twr_A 70 AK-DKGGLVPLHNACSYGH---YEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH----GA--------- 132 (165)
T ss_dssp CC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TC---------
T ss_pred cc-CCCCCCHHHHHHHcCc---HHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc----CC---------
Confidence 99 9999999999999999 9999999999999999999999999999999999988877763 42
Q ss_pred ccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc
Q 004911 182 EHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM 220 (724)
Q Consensus 182 ~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a 220 (724)
+++..|..|.||||+|+. |+.+++++|...++
T Consensus 133 ------~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 133 ------DPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp ------CTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred ------CCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 456788999999999877 88899999887653
No 51
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.94 E-value=6.3e-27 Score=243.99 Aligned_cols=183 Identities=17% Similarity=0.251 Sum_probs=160.1
Q ss_pred ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911 14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL 93 (724)
Q Consensus 14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL 93 (724)
+.+.+++..+.+|.||||+||..|++++|++||+ .|++++.. +..|+||||+|+..|+.++|++||
T Consensus 61 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------~~~g~tpL~~A~~~g~~~~v~~Ll 126 (299)
T 1s70_B 61 ERGADINYANVDGLTALHQACIDDNVDMVKFLVE-NGANINQP-------------DNEGWIPLHAAASCGYLDIAEYLI 126 (299)
T ss_dssp HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHH
Confidence 4577889999999999999999999999999999 89999877 588999999999999999999999
Q ss_pred hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCC--------------------------CCCCCCCCc
Q 004911 94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA-GADP--------------------------DCVDANGHH 146 (724)
Q Consensus 94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~--------------------------n~~D~~G~T 146 (724)
++ |++++.. +..|.||||+|+..++ .++++.|+.. |+++ ...+..|.|
T Consensus 127 ~~-g~~~~~~-~~~g~t~l~~A~~~~~---~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t 201 (299)
T 1s70_B 127 SQ-GAHVGAV-NSEGDTPLDIAEEEAM---EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT 201 (299)
T ss_dssp HT-TCCTTCC-CTTSCCHHHHCCSHHH---HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred hC-CCCCCCc-CCCCCCHHHHHHhcch---HHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCC
Confidence 99 9999999 9999999999999998 8998877754 5443 336678999
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccc
Q 004911 147 PIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMAL 222 (724)
Q Consensus 147 PLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~ 222 (724)
|||+|+..|+.++++.|++ .|+ +++..|..|.||||+|+..|+.++++.| ++.++.+
T Consensus 202 ~L~~A~~~g~~~~v~~Ll~----~g~---------------d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d 262 (299)
T 1s70_B 202 ALHVAAAKGYTEVLKLLIQ----ARY---------------DVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262 (299)
T ss_dssp HHHHHHHHTCHHHHHHHHT----TTC---------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred HHHHHHHCCcHHHHHHHHH----cCC---------------CCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcC
Confidence 9999999999988887665 343 5667889999999999999999985554 5677889
Q ss_pred cCCCCccccccc
Q 004911 223 KFNDVSFGTGAE 234 (724)
Q Consensus 223 ~~g~TpLh~Aa~ 234 (724)
..|.|||++|.+
T Consensus 263 ~~g~t~l~~A~~ 274 (299)
T 1s70_B 263 KVGQTAFDVADE 274 (299)
T ss_dssp TTSCCTTTSCCS
T ss_pred CCCCCHHHHHHH
Confidence 999999999965
No 52
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=1.8e-26 Score=221.87 Aligned_cols=157 Identities=24% Similarity=0.349 Sum_probs=140.7
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004911 26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG 105 (724)
Q Consensus 26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d 105 (724)
+.||||.||..|++++|+.||+..+..++.. +..|+||||+||..|+.++|++||++ |++++.. +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~ 66 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKP-------------DERGFTPLIWASAFGEIETVRFLLEW-GADPHIL-A 66 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHH-TCCTTCC-C
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCchhh-c
Confidence 4689999999999999999999544446665 58899999999999999999999999 9999999 9
Q ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccc
Q 004911 106 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNL 185 (724)
Q Consensus 106 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l 185 (724)
..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++. |+
T Consensus 67 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga------------- 126 (172)
T 3v30_A 67 KERESALSLASTGGY---TDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR----GA------------- 126 (172)
T ss_dssp TTCCCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TC-------------
T ss_pred ccCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CC-------------
Confidence 999999999999999 9999999999999999999999999999999999988877763 42
Q ss_pred ccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911 186 TVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 219 (724)
Q Consensus 186 ~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~ 219 (724)
+++..|..|.||||+|+..|+.++++.|++.+
T Consensus 127 --~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (172)
T 3v30_A 127 --DLTTEADSGYTPMDLAVALGYRKVQQVIENHI 158 (172)
T ss_dssp --CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred --CccccCCCCCCHHHHHHHhCcHHHHHHHHHHH
Confidence 45677889999999999999999987777654
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=4.4e-28 Score=248.37 Aligned_cols=199 Identities=15% Similarity=0.095 Sum_probs=163.5
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHh---cCCCCccccccccccccCCcccCCCCChHHHHHH---HcCCHHHHHHHHhcC
Q 004911 23 TEDSFTSMLELASNNDVEGFKRMLE---RDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAA---TYGSVDVLKLILLHS 96 (724)
Q Consensus 23 d~~g~TpLh~AA~~G~le~Vk~LLe---~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA---~~G~~evVklLLe~~ 96 (724)
+.-+.|+||.||..|+++.|+.||+ ..+.+++... ...+..|+||||+|+ ..|+.++|++||+.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~---------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~- 71 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE---------FREPSTGKTCLPKALLNLSAGRNDTIPILLDI- 71 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG---------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH-
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh---------hhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh-
Confidence 3467899999999999997666665 3677877652 112467999999999 67999999999998
Q ss_pred CCC-----------cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC--------------CCCCcHHHHH
Q 004911 97 SAD-----------VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD--------------ANGHHPIDVI 151 (724)
Q Consensus 97 GAD-----------VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D--------------~~G~TPLhlA 151 (724)
|++ ++.. |..|+||||+|+..|+ .++|++||++|++++.+| ..|+||||+|
T Consensus 72 g~~~~~~~~~~~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A 147 (260)
T 3jxi_A 72 AEKTGNMREFINSPFRDV-YYRGQTALHIAIERRC---KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLA 147 (260)
T ss_dssp HHHTTCHHHHHTCCBCCS-SEESBCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHH
T ss_pred cccccchHhhhccccccc-ccCCCCHHHHHHHcCC---HHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHH
Confidence 754 3333 5589999999999999 999999999999999999 6899999999
Q ss_pred hcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCC---------Cchhhhhc----CC
Q 004911 152 VLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS---------PPSPSRLV----SS 218 (724)
Q Consensus 152 a~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~---------~eiVe~La----d~ 218 (724)
+..|+.++++.|++.. ..|+ +++..|..|+||||+|+..++ .++++.|+ +.
T Consensus 148 ~~~g~~~~v~~Ll~~~-~~ga---------------~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~ 211 (260)
T 3jxi_A 148 ACTNQPHIVHYLTENG-HKQA---------------DLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL 211 (260)
T ss_dssp HHTTCHHHHHHHHHCS-SCCC---------------CTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHhcc-ccCC---------------CCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence 9999998888776610 0332 567889999999999998887 46655554 44
Q ss_pred -------CccccCCCCccccccccCCCCCCCCCCcccccc
Q 004911 219 -------PMALKFNDVSFGTGAEKREYPIDPSLPDIKNSI 251 (724)
Q Consensus 219 -------~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i 251 (724)
+..+..|.||||+|+..|+.++++.|++.|...
T Consensus 212 ~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 212 FPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp CTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 568899999999999999999999998887654
No 54
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=1.8e-26 Score=220.87 Aligned_cols=157 Identities=26% Similarity=0.316 Sum_probs=144.4
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 004911 25 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC 104 (724)
Q Consensus 25 ~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~ 104 (724)
+|.||||.||..|++++|+.|++ .+.+++.. +..|+||||+|+..|+.++|++||++ |++++..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~- 65 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE-QENVINHT-------------DEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQLL- 65 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH-HSSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCcchHHHHHHCCCHHHHHHHHH-cCCCcCCC-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCCc-
Confidence 57899999999999999999999 57888876 58999999999999999999999999 9999999
Q ss_pred CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccc
Q 004911 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHN 184 (724)
Q Consensus 105 d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~ 184 (724)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++ .|+
T Consensus 66 ~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~g~------------ 126 (167)
T 3v31_A 66 GKGRESALSLACSKGY---TDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE----SGA------------ 126 (167)
T ss_dssp CTTCCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC------------
T ss_pred CCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC------------
Confidence 9999999999999999 999999999999999999999999999999999998887776 343
Q ss_pred cccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911 185 LTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 219 (724)
Q Consensus 185 l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~ 219 (724)
+++..|..|.||||+|+..|+.++++++++..
T Consensus 127 ---~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~ 158 (167)
T 3v31_A 127 ---DPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158 (167)
T ss_dssp ---CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred ---CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHH
Confidence 45667889999999999999999988887654
No 55
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.94 E-value=5e-26 Score=227.05 Aligned_cols=173 Identities=18% Similarity=0.199 Sum_probs=157.1
Q ss_pred cccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHH
Q 004911 13 EDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLI 92 (724)
Q Consensus 13 ~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklL 92 (724)
.+.+.+++..+..|.||||+|+..|+.++|++|++..+.+++.. +..|.||||+|+..|+.+++++|
T Consensus 45 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~L 111 (223)
T 2f8y_A 45 LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR-------------MHDGTTPLILAARLAVEGMLEDL 111 (223)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHH
T ss_pred HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC-------------CCCCCcHHHHHHHhCcHHHHHHH
Confidence 44578889999999999999999999999999999655577766 58899999999999999999999
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911 93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN 172 (724)
Q Consensus 93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga 172 (724)
+++ |++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++. |+
T Consensus 112 l~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga 182 (223)
T 2f8y_A 112 INS-HADVNAV-DDLGKSALHWAAAVNN---VDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH----FA 182 (223)
T ss_dssp HHT-TCCTTCB-CTTSCBHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT----TC
T ss_pred HHc-CCCCcCc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc----CC
Confidence 998 9999999 9999999999999999 9999999999999999999999999999999999988877763 42
Q ss_pred CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccc
Q 004911 173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMAL 222 (724)
Q Consensus 173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~ 222 (724)
+++..|..|.||||+|+..++.+++++|++.++..
T Consensus 183 ---------------~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 183 ---------------NRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp ---------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred ---------------CCccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 45667889999999999999999999999887643
No 56
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.94 E-value=1.4e-26 Score=237.01 Aligned_cols=188 Identities=17% Similarity=0.131 Sum_probs=153.2
Q ss_pred ccCCCCCC----CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCH
Q 004911 14 DMNNNSTA----ETEDSFTSMLELASN---NDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSV 86 (724)
Q Consensus 14 ~m~~di~~----~d~~g~TpLh~AA~~---G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~ 86 (724)
..+.+++. .|.+|.||||+||.. |+.++|++||+ .|++++....... ......|..|+||||+||..|+.
T Consensus 27 ~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~~~--~~~~~~d~~g~t~L~~A~~~g~~ 103 (256)
T 2etb_A 27 WNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ-IDKDSGNPKPLVN--AQCTDEFYQGHSALHIAIEKRSL 103 (256)
T ss_dssp HHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH-HHHHTTCSSCGGG--CCCCSTTTTTCCHHHHHHHTTCH
T ss_pred HcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh-cCCcccchhhhcc--cccccccccCCCHHHHHHHcCCH
Confidence 35777887 899999999999999 99999999999 5666553321111 11223357899999999999999
Q ss_pred HHHHHHHhcCCCCcccccCCC-------------CCcHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCcHHHH
Q 004911 87 DVLKLILLHSSADVNVSCGSD-------------RTTALHCAASGGSANVVDVVRLLLS---AGADPDCVDANGHHPIDV 150 (724)
Q Consensus 87 evVklLLe~~GADVN~~~d~~-------------G~TPLH~Aa~~G~~~~~eiVklLLe---~GAd~n~~D~~G~TPLhl 150 (724)
++|++||++ |+++|.. +.. |.||||+|+..|+ .++|++||+ +|++++.+|..|+||||+
T Consensus 104 ~~v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~ 178 (256)
T 2etb_A 104 QCVKLLVEN-GADVHLR-ACGRFFQKHQGTCFYFGELPLSLAACTKQ---WDVVTYLLENPHQPASLEATDSLGNTVLHA 178 (256)
T ss_dssp HHHHHHHHT-TCCTTCC-CCSGGGSCCSSSCCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred HHHHHHHHc-CCCCCcc-cccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCcCccCCCCCCHHHH
Confidence 999999999 9999998 665 9999999999999 999999999 999999999999999999
Q ss_pred Hhc--CCCHH-------HHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCcc
Q 004911 151 IVL--PPKLD-------SMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMA 221 (724)
Q Consensus 151 Aa~--~G~~e-------ivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~ 221 (724)
|+. .++.+ +++.|++.+...... ...++..|..|.||||+|+..|+.++++.|++.+..
T Consensus 179 A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~------------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 246 (256)
T 2etb_A 179 LVMIADNSPENSALVIHMYDGLLQMGARLCPT------------VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246 (256)
T ss_dssp HHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTT------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcccCCchhhHHHHHHHHHHHHcCCCcccc------------cccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC
Confidence 998 88887 666666653322100 001267899999999999999999999999876643
No 57
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.94 E-value=3.7e-26 Score=222.90 Aligned_cols=135 Identities=32% Similarity=0.430 Sum_probs=127.3
Q ss_pred ccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHH
Q 004911 12 TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL 91 (724)
Q Consensus 12 ~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVkl 91 (724)
..+.++|++..|.+|.||||+|+..++.++++.||+ .|++++.. +.+|+||||+||..|+.++|++
T Consensus 23 Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~-~gad~~~~-------------d~~g~TpLh~A~~~g~~~~v~~ 88 (169)
T 4gpm_A 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLIS-KGADVNAK-------------DSDGRTPLHHAAENGHKEVVKL 88 (169)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh-cccchhhh-------------ccCCCCHHHHHHHcCCHHHHHH
Confidence 445688999999999999999999999999999999 89999887 6899999999999999999999
Q ss_pred HHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 004911 92 ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165 (724)
Q Consensus 92 LLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe 165 (724)
||++ |+|+|.+ |.+|+||||+|+..|+ .++|++||++|+|++.+|.+|+||||+|+..|+.++++.|++
T Consensus 89 Ll~~-gadvn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~ 157 (169)
T 4gpm_A 89 LISK-GADVNAK-DSDGRTPLHHAAENGH---KEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157 (169)
T ss_dssp HHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHC-cCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999 9999999 9999999999999999 999999999999999999999999999999999888775554
No 58
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=2.7e-26 Score=216.90 Aligned_cols=153 Identities=24% Similarity=0.314 Sum_probs=140.7
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004911 26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG 105 (724)
Q Consensus 26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d 105 (724)
+.|+||.||..|++++|+.||+..+.+++.. +..|+||||+ |..|+.++|++||++ |++++.. +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~-~~~~~~~~v~~Ll~~-g~~~~~~-~ 65 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL-------------NRFGKTALQV-MMFGSTAIALELLKQ-GASPNVQ-D 65 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCC-------------CTTSCCHHHH-SCTTCHHHHHHHHHT-TCCTTCC-C
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCcccc-------------CCCCCcHHHH-HHcCCHHHHHHHHHC-CCCCCCc-C
Confidence 5699999999999999999999645577776 5889999999 999999999999999 9999999 9
Q ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccc
Q 004911 106 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNL 185 (724)
Q Consensus 106 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l 185 (724)
..|.||||+|+..|+ .+++++|+++|++++.+|..|+||||+|+..|+.++++.|++. +
T Consensus 66 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~------------- 124 (156)
T 1bd8_A 66 TSGTSPVHDAARTGF---LDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-----S------------- 124 (156)
T ss_dssp TTSCCHHHHHHHTTC---HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-----S-------------
T ss_pred CCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-----c-------------
Confidence 999999999999999 9999999999999999999999999999999999999877762 1
Q ss_pred ccccCCCCCCCCChhchhHhcCCCchhhhhcC
Q 004911 186 TVSIGSSNSDYSSPLLTASASGSPPSPSRLVS 217 (724)
Q Consensus 186 ~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad 217 (724)
+++..|..|.||||+|+..|+.++++.|++
T Consensus 125 --~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 125 --DLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp --CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred --CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 566778999999999999999999998875
No 59
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.94 E-value=1.2e-26 Score=240.05 Aligned_cols=184 Identities=17% Similarity=0.167 Sum_probs=146.0
Q ss_pred CCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 004911 21 AETEDSFTSMLELASN---NDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSS 97 (724)
Q Consensus 21 ~~d~~g~TpLh~AA~~---G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~G 97 (724)
..+.+|.||||+||.. |+.++|++||+ .|++++....... ......+..|+||||+||..|+.++|++||++ |
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~-~ga~~~~~~~~i~--~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-g 124 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLD-VARKTDSLKQFVN--ASYTDSYYKGQTALHIAIERRNMTLVTLLVEN-G 124 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHH-HHHHTTCHHHHHT--CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT-T
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHH-hhccccchhHHhh--cccccccCCCCCHHHHHHHcCCHHHHHHHHHC-C
Confidence 3588999999999987 99999999999 5554322110000 11122357899999999999999999999999 9
Q ss_pred CCcccccCC--------------CCCcHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCcHHHHHhcCCC----
Q 004911 98 ADVNVSCGS--------------DRTTALHCAASGGSANVVDVVRLLLS---AGADPDCVDANGHHPIDVIVLPPK---- 156 (724)
Q Consensus 98 ADVN~~~d~--------------~G~TPLH~Aa~~G~~~~~eiVklLLe---~GAd~n~~D~~G~TPLhlAa~~G~---- 156 (724)
++++.. +. .|.||||+|+..|+ .++|++||+ +|++++.+|..|+||||+|+..|+
T Consensus 125 a~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~ 200 (273)
T 2pnn_A 125 ADVQAA-ANGDFFKKTKGRPGFYFGELPLSLAACTNQ---LAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVD 200 (273)
T ss_dssp CCTTCC-BCSGGGSSCSSSCCCCSCBSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred CCcCcc-ccccccccccccccccCCCCHHHHHHHcCC---HHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchh
Confidence 999998 65 79999999999999 999999999 999999999999999999999877
Q ss_pred -----HHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccC
Q 004911 157 -----LDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKF 224 (724)
Q Consensus 157 -----~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~ 224 (724)
.++++.|++.+...... ...++..|..|.||||+|+..|+.+++++|++.++.+..
T Consensus 201 ~~~~~~~~v~~Ll~~ga~~n~~------------~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~ 261 (273)
T 2pnn_A 201 NTKFVTSMYNEILILGAKLHPT------------LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE 261 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHhhhhcccc------------cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCch
Confidence 56666666553322210 002346789999999999999999999999988876654
No 60
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=4e-26 Score=215.90 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=137.8
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccC
Q 004911 26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCG 105 (724)
Q Consensus 26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d 105 (724)
..|+||.|+..|++++|++|++ .|.+++. +..|.||||+||..|+.++|++||+. |++++.. +
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~-~g~~~~~--------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~ 64 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMA-NGAPFTT--------------DWLGTSPLHLAAQYGHFSTTEVLLRA-GVSRDAR-T 64 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HTCCCCC--------------CTTCCCHHHHHHHHTCHHHHHHHHTT-TCCTTCC-C
T ss_pred ccHHHHHHHHcCCHHHHHHHHH-cCCCCCc--------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCC-C
Confidence 4689999999999999999999 5666653 57899999999999999999999999 9999999 9
Q ss_pred CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccccc
Q 004911 106 SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNL 185 (724)
Q Consensus 106 ~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l 185 (724)
..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++. |+
T Consensus 65 ~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----ga------------- 124 (153)
T 1awc_B 65 KVDRTPLHMAASEGH---ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY----GA------------- 124 (153)
T ss_dssp TTCCCHHHHHHHHTC---HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TC-------------
T ss_pred CCCCCHHHHHHHcCh---HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc----CC-------------
Confidence 999999999999999 9999999999999999999999999999999999988877763 42
Q ss_pred ccccCCCCCCCCChhchhHhcCCCchhhhh
Q 004911 186 TVSIGSSNSDYSSPLLTASASGSPPSPSRL 215 (724)
Q Consensus 186 ~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L 215 (724)
+++..|..|.||||+|+..|+.+++++|
T Consensus 125 --~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 125 --DVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp --CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred --CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 4567789999999999999999998765
No 61
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.93 E-value=4.3e-26 Score=221.31 Aligned_cols=161 Identities=19% Similarity=0.228 Sum_probs=143.6
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911 24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS 103 (724)
Q Consensus 24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~ 103 (724)
.++.++||.||..|++++|+.||+..+.+++.. +..|+||||+||..|+.++|++||++ |++++..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~ 68 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-------------DDHGFSPLHWACREGRSAVVEMLIMR-GARINVM 68 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCCc
Confidence 467899999999999999999999778888876 58899999999999999999999999 9999999
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccc
Q 004911 104 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEH 183 (724)
Q Consensus 104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~ 183 (724)
+..|.||||+|+..|+ .++|++||++|++++.+|..|.||||+|+..|+.++++.|++ .|+
T Consensus 69 -~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~ga----------- 129 (179)
T 3f6q_A 69 -NRGDDTPLHLAASHGH---RDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA----NGA----------- 129 (179)
T ss_dssp -CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH----TTC-----------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH----CCC-----------
Confidence 9999999999999999 999999999999999999999999999999999988887776 343
Q ss_pred ccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCcc
Q 004911 184 NLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMA 221 (724)
Q Consensus 184 ~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~ 221 (724)
+++..|..|.||||+|+..++.++++.++..++.
T Consensus 130 ----~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~ 163 (179)
T 3f6q_A 130 ----LVSICNKYGEMPVDKAKAPLRELLRERAEKMGQN 163 (179)
T ss_dssp ----CSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred ----CcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 4567789999999999999999998887766643
No 62
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.93 E-value=3.9e-26 Score=233.87 Aligned_cols=188 Identities=17% Similarity=0.125 Sum_probs=147.1
Q ss_pred cCCCCCCCC----CCCchHHHHHH---HcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHH
Q 004911 15 MNNNSTAET----EDSFTSMLELA---SNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVD 87 (724)
Q Consensus 15 m~~di~~~d----~~g~TpLh~AA---~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~e 87 (724)
.+.+++..+ .+|.||||+|+ ..|+.++|++||+ .|++.+...-. ........|..|+||||+||..|+.+
T Consensus 31 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~-~g~~~~~~~~~--~~~~~~~~d~~g~t~L~~A~~~g~~~ 107 (260)
T 3jxi_A 31 HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD-IAEKTGNMREF--INSPFRDVYYRGQTALHIAIERRCKH 107 (260)
T ss_dssp HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH-HHHHTTCHHHH--HTCCBCCSSEESBCHHHHHHHTTCHH
T ss_pred cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH-hcccccchHhh--hcccccccccCCCCHHHHHHHcCCHH
Confidence 455666554 77999999999 6799999999999 45432221100 00112233568999999999999999
Q ss_pred HHHHHHhcCCCCcccccC--------------CCCCcHHHHHHhCCCCCHHHHHHHHHH---CCCCCCCCCCCCCcHHHH
Q 004911 88 VLKLILLHSSADVNVSCG--------------SDRTTALHCAASGGSANVVDVVRLLLS---AGADPDCVDANGHHPIDV 150 (724)
Q Consensus 88 vVklLLe~~GADVN~~~d--------------~~G~TPLH~Aa~~G~~~~~eiVklLLe---~GAd~n~~D~~G~TPLhl 150 (724)
+|++||++ |+++|.. + ..|.||||+|+..|+ .++|++||+ +|++++.+|..|+||||+
T Consensus 108 ~v~~Ll~~-ga~~~~~-~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~ 182 (260)
T 3jxi_A 108 YVELLVEK-GADVHAQ-ARGRFFQPKDEGGYFYFGELPLSLAACTNQ---PHIVHYLTENGHKQADLRRQDSRGNTVLHA 182 (260)
T ss_dssp HHHHHHHT-TCCTTCC-CEECCCSSSCCCCSCCSCSSHHHHHHHTTC---HHHHHHHHHCSSCCCCTTCCCTTSCCHHHH
T ss_pred HHHHHHhC-CCCcCcc-ccccccCcccccccccCCCCHHHHHHHcCC---HHHHHHHHhccccCCCCcccCCCCCcHHHH
Confidence 99999999 9999998 6 689999999999999 999999999 999999999999999999
Q ss_pred HhcCCC---------HHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCcc
Q 004911 151 IVLPPK---------LDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMA 221 (724)
Q Consensus 151 Aa~~G~---------~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~ 221 (724)
|+..++ .++++.|++.+...... ...++..|..|.||||+|+..|+.+++++|++.+..
T Consensus 183 A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~------------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFPD------------TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTT------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCchhHHHHHHHHHHHHHHhCcccccc------------cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 997666 45555555543322110 012367899999999999999999999999987644
Q ss_pred c
Q 004911 222 L 222 (724)
Q Consensus 222 ~ 222 (724)
.
T Consensus 251 ~ 251 (260)
T 3jxi_A 251 D 251 (260)
T ss_dssp H
T ss_pred c
Confidence 3
No 63
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.93 E-value=1.1e-27 Score=256.35 Aligned_cols=226 Identities=12% Similarity=0.046 Sum_probs=172.4
Q ss_pred cccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCc----ccCCCCChHHHHHHHcCCH
Q 004911 11 NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSK----QMVSEHRTPLMVAATYGSV 86 (724)
Q Consensus 11 ~~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~----~~d~~G~TPLH~AA~~G~~ 86 (724)
...+.+++++..+..|.|+++ |++++|+.||+ .|++.+...++++...... .......+.+|+|+..+..
T Consensus 37 ~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~-~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 110 (327)
T 1sw6_A 37 DFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFLQ-RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQ 110 (327)
T ss_dssp STTTSSCCCEECBCCCCCCCH-----HHHHHHHHHHH-HHHC-------------------------------CHHHHHH
T ss_pred HHhhCCcccccCCCCCCcccC-----chhHHHHHHHH-hccCCccccchHhhhcccccccccccCCccchhHHHHHhhHH
Confidence 445568888999999999987 99999999999 6777666444443322100 0111223446888888888
Q ss_pred HHHHHHHhcCCCCccc-ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC---HHHHHH
Q 004911 87 DVLKLILLHSSADVNV-SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK---LDSMRA 162 (724)
Q Consensus 87 evVklLLe~~GADVN~-~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~---~eivk~ 162 (724)
+++++|++. |+|+|. . +.+|+||||+||..|+ .++|++||++|++++.+|..|+||||+|+..|+ .++++.
T Consensus 111 ~~~~~l~~~-g~dvn~~~-d~~g~TpLh~Aa~~g~---~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ 185 (327)
T 1sw6_A 111 EVNDAFPNT-QLNLNIPV-DEHGNTPLHWLTSIAN---LELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEA 185 (327)
T ss_dssp HHHHHCTTS-CCCSCSCC-STTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHH
T ss_pred HHHHHHHhc-CCCccccc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHH
Confidence 999999988 999998 6 8999999999999999 999999999999999999999999999999887 677788
Q ss_pred HHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHh----cCCCchhhhhc----------------------
Q 004911 163 ILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASA----SGSPPSPSRLV---------------------- 216 (724)
Q Consensus 163 LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~----~G~~eiVe~La---------------------- 216 (724)
|++.+.. +++..|..|.||||+|+. .|+.++++.++
T Consensus 186 ll~~~~~------------------~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~ 247 (327)
T 1sw6_A 186 LLDYLYP------------------CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK 247 (327)
T ss_dssp HHHHHGG------------------GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----
T ss_pred HHHhhhc------------------cccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcc
Confidence 8876431 345567788888888888 77777766654
Q ss_pred ---------------------------CCCccccCCCCccccccccCCCCCCCCCCccccccccccccccccceee
Q 004911 217 ---------------------------SSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIYATDEFRMFSFKIR 265 (724)
Q Consensus 217 ---------------------------d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g~~~fkV~ 265 (724)
+++.++..|+||||+|+..|+.++++.|++.|++++..|..|.++++++
T Consensus 248 g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 248 ESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323 (327)
T ss_dssp ------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred cCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 5778889999999999999999999999999999999999999999876
No 64
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.93 E-value=1.3e-26 Score=243.09 Aligned_cols=195 Identities=15% Similarity=0.059 Sum_probs=169.0
Q ss_pred cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911 15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL 94 (724)
Q Consensus 15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe 94 (724)
.+++++.. +|.||||+|+..|+.++|++||+ .|++++.. +..|+||||+||..|+.++|++||+
T Consensus 53 ~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~-~ga~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~ 116 (285)
T 3kea_A 53 AGALKNLL--ENEFPLHQAATLEDTKIVKILLF-SGLDDSQF-------------DDKGNTALYYAVDSGNMQTVKLFVK 116 (285)
T ss_dssp TTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 45555555 59999999999999999999999 79999876 5899999999999999999999999
Q ss_pred cCCCCcccccCCCC-CcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCC
Q 004911 95 HSSADVNVSCGSDR-TTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNS 173 (724)
Q Consensus 95 ~~GADVN~~~d~~G-~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~ 173 (724)
+ |++++.. +..| .||||+|+..|+ .+++++|+++|+++... ..|.||||+|+..|+.++++.|++.+.
T Consensus 117 ~-ga~~~~~-~~~g~~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~ga----- 185 (285)
T 3kea_A 117 K-NWRLMFY-GKTGWKTSFYHAVMLND---VSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMT----- 185 (285)
T ss_dssp H-CGGGGGC-SSSGGGSHHHHHHHTTC---HHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHH-----
T ss_pred c-CCCCCcc-CCCCCCCHHHHHHHcCC---HHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCC-----
Confidence 9 9999999 8888 799999999999 99999999999987433 289999999999999999999888632
Q ss_pred chhhhcccccccccccCCCCCCCCCh-hchhHhcCCCchhhhhcCCCccccCCCCccccccccCCCCCCCCCCccccccc
Q 004911 174 SVVVASGAEHNLTVSIGSSNSDYSSP-LLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNSIY 252 (724)
Q Consensus 174 ~~~~aa~~~~~l~~~in~~d~~G~TP-Lh~Aa~~G~~eiVe~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~i~ 252 (724)
+++..|..|.|| ||+|+..|+.+++++|++.++.....+ +.|+..++.++++.|++.|.++.
T Consensus 186 --------------d~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~---~~a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 186 --------------STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN---LENVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp --------------HTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT---GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred --------------CCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC---hhhhhcCCHHHHHHHHHcCCCCC
Confidence 456778899998 999999999999888887775443332 46788899999999999887765
Q ss_pred c
Q 004911 253 A 253 (724)
Q Consensus 253 ~ 253 (724)
.
T Consensus 249 ~ 249 (285)
T 3kea_A 249 S 249 (285)
T ss_dssp T
T ss_pred C
Confidence 4
No 65
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=2.5e-26 Score=234.31 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=121.3
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 004911 24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVS 103 (724)
Q Consensus 24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~ 103 (724)
..|.||||.|+..|+.++++.||+ .|++++.. ..|.||||+||..|+.++|++||+. |+++|..
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~-~g~~~~~~--------------~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~ 66 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIA-HGMRVKFN--------------PLPLALLLDSSLEGEFDLVQRIIYE-VDDPSLP 66 (239)
T ss_dssp -------------------------------------------------CHHHHHHHHHHTCHHHHHHHTST-TSSCCCC
T ss_pred ccccccCchhhhhhhHHHHHHHhc-cCCCcccC--------------chhhHHHHHHHHcCCHHHHHHHHHc-CCCCCCc
Confidence 468999999999999999999999 88888753 5789999999999999999999999 9999999
Q ss_pred cCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhccccc
Q 004911 104 CGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEH 183 (724)
Q Consensus 104 ~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~ 183 (724)
|..|+||||+|+..|+ .++|++||++|++++.+|..|+||||+|+..|+.++++.|++. |+
T Consensus 67 -d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~----ga----------- 127 (239)
T 1ycs_B 67 -NDEGITALHNAVCAGH---TEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES----GA----------- 127 (239)
T ss_dssp -CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT----TC-----------
T ss_pred -CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc----CC-----------
Confidence 9999999999999999 9999999999999999999999999999999999988877763 43
Q ss_pred ccccccCCCCCCCC-Chhchh--HhcCCCchhhhhcCCC----cc---------ccCCCCccccccccCC
Q 004911 184 NLTVSIGSSNSDYS-SPLLTA--SASGSPPSPSRLVSSP----MA---------LKFNDVSFGTGAEKRE 237 (724)
Q Consensus 184 ~l~~~in~~d~~G~-TPLh~A--a~~G~~eiVe~Lad~~----a~---------~~~g~TpLh~Aa~~g~ 237 (724)
+++..+..|. ||||+| +..|+.+++++|+..+ .. +..+.++++++...|.
T Consensus 128 ----~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 128 ----AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp ----CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred ----CcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 4556666666 999999 8889999977776433 32 4456677777766665
No 66
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=234.31 Aligned_cols=163 Identities=21% Similarity=0.237 Sum_probs=146.1
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC-CccccccccccccCCcccCCCCChHHHHHH-----HcCCHHHHHHH
Q 004911 19 STAETEDSFTSMLELASNNDVEGFKRMLERDPS-SVDEVGLWYGRVNGSKQMVSEHRTPLMVAA-----TYGSVDVLKLI 92 (724)
Q Consensus 19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~ga-dIn~~gl~~a~~~g~~~~d~~G~TPLH~AA-----~~G~~evVklL 92 (724)
++..|.+|.||||+||..|+.++|++||+ .|+ +++.. +..|+||||+|+ ..++.+++++|
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~-~g~~~~~~~-------------~~~g~tpL~~a~~~~~~~~~~~~~v~~L 169 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLD-SGVCKVDKQ-------------NRAGYSPIMLTALATLKTQDDIETVLQL 169 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TSCCCTTCC-------------CTTSCCHHHHGGGCCCCSHHHHHHHHHH
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHH-CCCCcCCCC-------------CCCCCCHHHHHHHHHhhhhhhHHHHHHH
Confidence 67889999999999999999999999999 555 88876 588999999999 67899999999
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC
Q 004911 93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN 172 (724)
Q Consensus 93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga 172 (724)
++. |++++.. +..|+||||+|+..|+ .++|++||++|+|+|.+|.+|+||||+|+..|+.++++.|++. .|+
T Consensus 170 l~~-g~~~~~~-~~~g~tpLh~A~~~g~---~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~---~ga 241 (276)
T 4hbd_A 170 FRL-GNINAKA-SQAGQTALMLAVSHGR---VDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAV---PSC 241 (276)
T ss_dssp HHH-SCTTCCC-TTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTS---TTC
T ss_pred HHc-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhc---CCC
Confidence 999 8888887 8899999999999999 9999999999999999999999999999999998888876651 342
Q ss_pred CchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCC
Q 004911 173 SSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS 218 (724)
Q Consensus 173 ~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~ 218 (724)
+++..|..|.||||+|+..|+.+++++|++.
T Consensus 242 ---------------d~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 242 ---------------DISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp ---------------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------------CCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 5667899999999999999999999988754
No 67
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=5.2e-25 Score=204.65 Aligned_cols=132 Identities=27% Similarity=0.328 Sum_probs=124.5
Q ss_pred CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911 16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 95 (724)
Q Consensus 16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 95 (724)
+.+++..+..|.||||+|+..|++++|++||+ .|++++.. +..|+||||+||. |+.++|++||++
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~-~~~~~v~~Ll~~ 66 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLE-AGADPNAL-------------NRFGRRPIQVMMM-GSAQVAELLLLH 66 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCTTTTTSTT-SCHHHHHHHHHH
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHH-cCCCcCCc-------------CCCCCCHHHHHHc-CCHHHHHHHHHC
Confidence 35688899999999999999999999999999 78998876 5899999999999 999999999999
Q ss_pred CCCCcccccCCC-CCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHH
Q 004911 96 SSADVNVSCGSD-RTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV 167 (724)
Q Consensus 96 ~GADVN~~~d~~-G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~L 167 (724)
|+++|.. +.. |.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..++.++++.|++.+
T Consensus 67 -g~~~~~~-~~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 67 -GAEPNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp -TCCSSCC-BTTTTBCHHHHHHHHTC---HHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred -CCCCCCc-CCCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999 888 9999999999999 99999999999999999999999999999999999999888764
No 68
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.91 E-value=6.1e-26 Score=237.11 Aligned_cols=184 Identities=14% Similarity=0.157 Sum_probs=160.3
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCC--ccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC-Cccc
Q 004911 26 SFTSMLELASNNDVEGFKRMLERDPSS--VDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA-DVNV 102 (724)
Q Consensus 26 g~TpLh~AA~~G~le~Vk~LLe~~gad--In~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA-DVN~ 102 (724)
..+++|.|+..|+++.++.+++ .+.+ +|.. |.+|+||||+||..|+.++|++||+. |+ +++.
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~-~~~~~~~n~~-------------d~~g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~ 140 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSA-RLLDYVVNIA-------------DSNGNTALHYSVSHANFPVVQQLLDS-GVCKVDK 140 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCH-HHHHHHHTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-SCCCTTC
T ss_pred hccCCCHHHHHHHHHHHHHHHH-HHHhhcCcCC-------------CCCCCCHHHHHHHCCCHHHHHHHHHC-CCCcCCC
Confidence 3467788999999999999988 3333 4444 68999999999999999999999999 87 9999
Q ss_pred ccCCCCCcHHHHHH-----hCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhh
Q 004911 103 SCGSDRTTALHCAA-----SGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVV 177 (724)
Q Consensus 103 ~~d~~G~TPLH~Aa-----~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~ 177 (724)
. +..|.||||+|+ ..++ .+++++|++.|++++..|..|+||||+|+..|+.++++.|++ .|+
T Consensus 141 ~-~~~g~tpL~~a~~~~~~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~----~ga----- 207 (276)
T 4hbd_A 141 Q-NRAGYSPIMLTALATLKTQDD---IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLA----CEA----- 207 (276)
T ss_dssp C-CTTSCCHHHHGGGCCCCSHHH---HHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH----TTC-----
T ss_pred C-CCCCCCHHHHHHHHHhhhhhh---HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh----CCC-----
Confidence 8 999999999999 4566 999999999999999999999999999999999998887776 343
Q ss_pred hcccccccccccCCCCCCCCChhchhHhcCCCchhhhhc-----CCCccccCCCCccccccccCCCCCCCCCCcc
Q 004911 178 ASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLV-----SSPMALKFNDVSFGTGAEKREYPIDPSLPDI 247 (724)
Q Consensus 178 aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~La-----d~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ 247 (724)
+++..|..|.||||+|+..|+.+++++|+ +.+..+..|.||||+|+..|+.++++.|++.
T Consensus 208 ----------d~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 208 ----------DVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp ----------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred ----------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 56778999999999999999999977665 4568889999999999999999988877654
No 69
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.6e-24 Score=206.09 Aligned_cols=148 Identities=27% Similarity=0.293 Sum_probs=115.9
Q ss_pred CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911 16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 95 (724)
Q Consensus 16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 95 (724)
+...+..++.|.||||+||..|++++|++||+ .|++++.. +..|+||||+|+ .|+.++|++||++
T Consensus 2 ep~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~-~~~~~~v~~Ll~~ 66 (156)
T 1bi7_B 2 EPAAGSSMEPSADWLATAAARGRVEEVRALLE-AGANPNAP-------------NSYGRRPIQVMM-MGSARVAELLLLH 66 (156)
T ss_dssp --------CCSTTHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CSSSCCTTTSSC-TTCHHHHHHHHTT
T ss_pred CCCccCCCccchHHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHH-cCCHHHHHHHHHc
Confidence 34456678899999999999999999999999 78998887 589999999985 9999999999999
Q ss_pred CCCCcccccCCCCCc-HHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCc
Q 004911 96 SSADVNVSCGSDRTT-ALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSS 174 (724)
Q Consensus 96 ~GADVN~~~d~~G~T-PLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~ 174 (724)
|+++|.. +..|.| |||+|+..|+ .++|++||++|++++.+|..|+||||+|+..|+.++++.|+ +.|+
T Consensus 67 -g~~~~~~-d~~g~ttpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll----~~ga-- 135 (156)
T 1bi7_B 67 -GAEPNCA-DPATLTRPVHDAAREGF---LDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR----AAAG-- 135 (156)
T ss_dssp -TCCCCCC-CTTTCCCHHHHHHHHTC---HHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHS----SCC---
T ss_pred -CCCCCCc-CCCCCcHHHHHHHHCCC---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHH----HcCC--
Confidence 9999999 999999 9999999999 99999999999999999999999999999999988777554 4554
Q ss_pred hhhhcccccccccccCCCCCCCCChhch
Q 004911 175 VVVASGAEHNLTVSIGSSNSDYSSPLLT 202 (724)
Q Consensus 175 ~~~aa~~~~~l~~~in~~d~~G~TPLh~ 202 (724)
+++..+..|.||.+.
T Consensus 136 -------------~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 136 -------------GTRGSNHARIDAAEG 150 (156)
T ss_dssp ----------------------------
T ss_pred -------------CCCccCcCcCccccc
Confidence 455667777777763
No 70
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.90 E-value=3.9e-24 Score=217.93 Aligned_cols=186 Identities=17% Similarity=0.148 Sum_probs=150.6
Q ss_pred HHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCC
Q 004911 42 FKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSA 121 (724)
Q Consensus 42 Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~ 121 (724)
|+.||+ .+.+++... ..+.+|.||||+||..|+.++|++||+. |+++|.. |..|+||||+|+..|+
T Consensus 1 v~~ll~-~~~~~~~~~----------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-d~~g~tpLh~A~~~g~- 66 (229)
T 2vge_A 1 MRSVLR-KAGSPRKAR----------RARLNPLVLLLDAALTGELEVVQQAVKE-MNDPSQP-NEEGITALHNAICGAN- 66 (229)
T ss_dssp ----------CCCCCC----------CTTSCHHHHHHHHHHHTCHHHHHHHHHH-SSCTTCC-CTTSCCHHHHHHHTTC-
T ss_pred Ceehhc-cCCCCcccc----------ccccchhHHHHHHHHcCCHHHHHHHHhc-CCCCCCC-CCCCCCHHHHHHHcCC-
Confidence 467787 666665442 2356788999999999999999999999 9999998 9999999999999999
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCC-CCCCChh
Q 004911 122 NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSN-SDYSSPL 200 (724)
Q Consensus 122 ~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d-~~G~TPL 200 (724)
.++|++||++|++++.+|..|+||||+|+..|+.++++.|++ .|+ +++..+ ..|.|||
T Consensus 67 --~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~----~ga---------------~~~~~~~~~g~tpL 125 (229)
T 2vge_A 67 --YSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQ----HGA---------------AIFATTLSDGATAF 125 (229)
T ss_dssp --HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT----TTC---------------CTTCCCSSTTCCTG
T ss_pred --HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH----cCC---------------CcccccCCCCCCHH
Confidence 999999999999999999999999999999999988887665 443 344554 6899999
Q ss_pred chh--HhcCCCchhhhh----cCCCccccCCCCccccccccCCCCCCCCCCccccc--cccccccccccceee
Q 004911 201 LTA--SASGSPPSPSRL----VSSPMALKFNDVSFGTGAEKREYPIDPSLPDIKNS--IYATDEFRMFSFKIR 265 (724)
Q Consensus 201 h~A--a~~G~~eiVe~L----ad~~a~~~~g~TpLh~Aa~~g~~~i~~~L~d~ga~--i~~~D~~g~~~fkV~ 265 (724)
|+| +..|+.+++++| ++.+..+..+.++++.++.... ...|+..|++ +...|..|.++++.+
T Consensus 126 ~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~---~~~ll~~ga~~~~~~~d~~G~TpL~~A 195 (229)
T 2vge_A 126 EKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG---DELSFREGESVTVLRRDGPEETDWWWA 195 (229)
T ss_dssp GGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST---TBCCBCTTCEEEEEESSCTTCSSEEEE
T ss_pred HHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc---cccCccccccccccccCCCcccHHHHH
Confidence 999 999999985555 5677888889999987665543 3577888888 677899999999987
No 71
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.90 E-value=1.7e-23 Score=201.44 Aligned_cols=135 Identities=27% Similarity=0.374 Sum_probs=127.0
Q ss_pred ccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHH
Q 004911 12 TEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKL 91 (724)
Q Consensus 12 ~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVkl 91 (724)
..+.+.+++..+.+|.||||+|+..|++++|++||+ .|++++.. +..|+||||+|+..|+.+++++
T Consensus 33 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~ 98 (169)
T 2y1l_E 33 LMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGADVNAV-------------DHAGMTPLRLAALFGHLEIVEV 98 (169)
T ss_dssp HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHH
Confidence 344578889999999999999999999999999999 78888876 5889999999999999999999
Q ss_pred HHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 004911 92 ILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165 (724)
Q Consensus 92 LLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe 165 (724)
|+++ |++++.. +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..|+.++++.|++
T Consensus 99 Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 167 (169)
T 2y1l_E 99 LLKN-GADVNAN-DMEGHTPLHLAAMFGH---LEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167 (169)
T ss_dssp HHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHc-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 9999 9999999 9999999999999999 999999999999999999999999999999999999988775
No 72
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.90 E-value=1.2e-23 Score=195.49 Aligned_cols=126 Identities=24% Similarity=0.313 Sum_probs=117.9
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911 22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN 101 (724)
Q Consensus 22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN 101 (724)
....+.||||+||..|++++|++||+ .|++++.. |..|+||||+||..|+.++|++||++ |+++|
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~ 74 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMA-NGADVNAK-------------DEYGLTPLYLATAHGHLEIVEVLLKN-GADVN 74 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTT
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence 45568899999999999999999999 78998876 58899999999999999999999999 99999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911 102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE 166 (724)
Q Consensus 102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~ 166 (724)
.. |..|.||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+..|+.++++.|++.
T Consensus 75 ~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 75 AV-DAIGFTPLHLAAFIGH---LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp CC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred cC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 99 9999999999999999 9999999999999999999999999999999999999988763
No 73
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.90 E-value=3.6e-23 Score=197.86 Aligned_cols=137 Identities=23% Similarity=0.321 Sum_probs=129.0
Q ss_pred ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911 14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL 93 (724)
Q Consensus 14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL 93 (724)
+.+.+++..|..|.||||+|+..|++++|++|++ .|++++.. +..|.||||+|+..|+.++|++||
T Consensus 24 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll 89 (167)
T 3v31_A 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLL-------------GKGRESALSLACSKGYTDIVKMLL 89 (167)
T ss_dssp HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred HcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHH-cCCCCCCc-------------CCCCCcHHHHHHHcCCHHHHHHHH
Confidence 3467788999999999999999999999999999 78888876 588999999999999999999999
Q ss_pred hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911 94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG 169 (724)
Q Consensus 94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~ 169 (724)
++ |++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.+.+
T Consensus 90 ~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 90 DC-GVDVNEY-DWNGGTPLLYAVHGNH---VKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp HH-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HC-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 99 9999999 9999999999999999 9999999999999999999999999999999999999999987543
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.90 E-value=8.5e-24 Score=215.57 Aligned_cols=168 Identities=16% Similarity=0.128 Sum_probs=135.6
Q ss_pred cccccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHH
Q 004911 11 NTEDMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLK 90 (724)
Q Consensus 11 ~~~~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVk 90 (724)
...+.+++++. +..+.||||.|+..|++++|+.||+ .|++++.. |..|+||||+||..|+.++|+
T Consensus 23 ~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~ 87 (239)
T 1ycs_B 23 ERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIY-EVDDPSLP-------------NDEGITALHNAVCAGHTEIVK 87 (239)
T ss_dssp ---------------CHHHHHHHHHHTCHHHHHHHTS-TTSSCCCC-------------CTTSCCHHHHHHHHTCHHHHH
T ss_pred HHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCCHHHHH
Confidence 33445666665 3778999999999999999999999 78888887 688999999999999999999
Q ss_pred HHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCC-cHHHHH--hcCCCHHHHHHHHHHH
Q 004911 91 LILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGH-HPIDVI--VLPPKLDSMRAILEEV 167 (724)
Q Consensus 91 lLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~-TPLhlA--a~~G~~eivk~LLe~L 167 (724)
+||++ |+++|.. |..|+||||+|+..|+ .++|++||++|++++.+|..|. ||||+| +..|+.++++.|++..
T Consensus 88 ~Ll~~-ga~~~~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~ 162 (239)
T 1ycs_B 88 FLVQF-GVNVNAA-DSDGWTPLHCAASCNN---VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ 162 (239)
T ss_dssp HHHHH-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred HHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhh
Confidence 99999 9999999 9999999999999999 9999999999999999998887 999999 7889999999999876
Q ss_pred HcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCC
Q 004911 168 FGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGS 208 (724)
Q Consensus 168 l~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~ 208 (724)
...+.... .......+..+.++++++...|.
T Consensus 163 a~~~~~~~----------~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 163 EKMGIMNK----------GVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHTTTTGG----------GEEEESSCBCCSSTTBCCBCSSC
T ss_pred hccccccc----------ceEEEEeccCCCCCCcccccCCC
Confidence 65542100 11122347778999999988886
No 75
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.90 E-value=3e-24 Score=208.28 Aligned_cols=165 Identities=16% Similarity=0.221 Sum_probs=145.6
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 004911 71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDV 150 (724)
Q Consensus 71 ~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhl 150 (724)
.++.++||.||..|+.++|++||+..+.+++.. +..|+||||+|+..|+ .++|++||++|++++.+|..|.||||+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~g~t~L~~ 78 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQG-DDHGFSPLHWACREGR---SAVVEMLIMRGARINVMNRGDDTPLHL 78 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccccccc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence 468899999999999999999999878899998 9999999999999999 999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhh----cCCCccccCCC
Q 004911 151 IVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRL----VSSPMALKFND 226 (724)
Q Consensus 151 Aa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L----ad~~a~~~~g~ 226 (724)
|+..|+.++++.|++. |+ +++..|..|.||||+|+..|+.++++.| ++.+..+..|.
T Consensus 79 A~~~~~~~~v~~Ll~~----g~---------------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 139 (179)
T 3f6q_A 79 AASHGHRDIVQKLLQY----KA---------------DINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGE 139 (179)
T ss_dssp HHHTTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSC
T ss_pred HHHcCCHHHHHHHHHc----CC---------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCC
Confidence 9999999988877763 42 5667889999999999999999996555 56668889999
Q ss_pred CccccccccCCCCCCCCCCccccccccccccc
Q 004911 227 VSFGTGAEKREYPIDPSLPDIKNSIYATDEFR 258 (724)
Q Consensus 227 TpLh~Aa~~g~~~i~~~L~d~ga~i~~~D~~g 258 (724)
|||++|+..++..+++.|++.|++++..+..+
T Consensus 140 tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 140 MPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp CGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 99999999999999999999999887766443
No 76
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=4e-24 Score=211.57 Aligned_cols=162 Identities=13% Similarity=0.112 Sum_probs=137.0
Q ss_pred CchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCH----HHHHHHHhcCCCCcc
Q 004911 26 SFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSV----DVLKLILLHSSADVN 101 (724)
Q Consensus 26 g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~----evVklLLe~~GADVN 101 (724)
++++|+.||..|+++.|+.+++. + ++... +..|+||||+|+.+|+. ++|++||++ |+|||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~-~--~~~~~------------~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~-Gadvn 69 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK-G--YEDKE------------SVLKSNILYDVLRNNNDEARYKISMFLINK-GADIK 69 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH-S--SSCHH------------HHHTTTHHHHHTTCSCHHHHHHHHHHHHHT-TCCSS
T ss_pred cccHHHHHHHcCCHHHHHHHHhc-C--ccccc------------ccCCCCHHHHHHHcCCcchHHHHHHHHHHC-CCCCC
Confidence 56889999999999999999984 3 23321 25699999999999985 599999999 99999
Q ss_pred cccCCCCCcHHHHHHhCCCCCH---HHHHHHHHHCCCCCCCCCCCCC-cHHHHHhcCCCH-HHHHHHHHHHHc-CCCCch
Q 004911 102 VSCGSDRTTALHCAASGGSANV---VDVVRLLLSAGADPDCVDANGH-HPIDVIVLPPKL-DSMRAILEEVFG-SKNSSV 175 (724)
Q Consensus 102 ~~~d~~G~TPLH~Aa~~G~~~~---~eiVklLLe~GAd~n~~D~~G~-TPLhlAa~~G~~-eivk~LLe~Ll~-~ga~~~ 175 (724)
.+ +.+|+||||+|+..|+... .++|++||++|||+|.+|..|+ ||||+|+..+.. .....++++|+. .|+
T Consensus 70 ~~-d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga--- 145 (186)
T 3t8k_A 70 SR-TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL--- 145 (186)
T ss_dssp CC-CTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC---
T ss_pred CC-CCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC---
Confidence 99 9999999999999887432 5889999999999999999999 999999996653 233456677777 775
Q ss_pred hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911 176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 219 (724)
Q Consensus 176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~ 219 (724)
+++.+|..|.||||+|+..|+.++|++|.+..
T Consensus 146 ------------d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 146 ------------QLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp ------------CTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred ------------CCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 67788999999999999999999988887543
No 77
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.90 E-value=2.8e-23 Score=199.55 Aligned_cols=132 Identities=24% Similarity=0.320 Sum_probs=125.2
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911 19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 98 (724)
Q Consensus 19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 98 (724)
++..+..|.||||+|+..|++++|++||+ .|++++.. +..|+||||+|+..|+.++|++||++ |+
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~ 93 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLE-WGADPHIL-------------AKERESALSLASTGGYTDIVGLLLER-DV 93 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHTT-TC
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCchhh-------------cccCCCHHHHHHHCCCHHHHHHHHHc-CC
Confidence 67788999999999999999999999999 78888876 58899999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHc
Q 004911 99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFG 169 (724)
Q Consensus 99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~ 169 (724)
+++.. +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..|+.++++.|++.+.+
T Consensus 94 ~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (172)
T 3v30_A 94 DINIY-DWNGGTPLLYAVRGNH---VKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILK 160 (172)
T ss_dssp CTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHH
Confidence 99999 9999999999999999 9999999999999999999999999999999999999999987543
No 78
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.89 E-value=7.9e-23 Score=193.19 Aligned_cols=128 Identities=25% Similarity=0.257 Sum_probs=119.4
Q ss_pred CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911 16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 95 (724)
Q Consensus 16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 95 (724)
+.+++ .+..|.||||+|+..|+.++|++|++ .|++++.. +..|+||||+|+..|+.++|++|+++
T Consensus 25 g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 89 (153)
T 1awc_B 25 GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLR-AGVSRDAR-------------TKVDRTPLHMAASEGHANIVEVLLKH 89 (153)
T ss_dssp TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHT-TTCCTTCC-------------CTTCCCHHHHHHHHTCHHHHHHHHTT
T ss_pred CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcChHHHHHHHHHc
Confidence 44444 57889999999999999999999999 88888876 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHH
Q 004911 96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAI 163 (724)
Q Consensus 96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~L 163 (724)
|++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|
T Consensus 90 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 90 -GADVNAK-DMLKMTALHWATEHNH---QEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp -TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred -CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999 9999999999999999 9999999999999999999999999999999999988764
No 79
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.89 E-value=3.3e-23 Score=196.55 Aligned_cols=133 Identities=23% Similarity=0.221 Sum_probs=124.4
Q ss_pred ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911 14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL 93 (724)
Q Consensus 14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL 93 (724)
+.+.+++..+..|.||||+|+. |+.++|++|++ .|++++.. +..|+||||+|+..|+.++|++||
T Consensus 26 ~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll 90 (162)
T 1ihb_A 26 QNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLL-RGANPDLK-------------DRTGFAVIHDAARAGFLDTLQTLL 90 (162)
T ss_dssp TSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hCCCCccccCccCccHHHHHHc-CcHHHHHHHHH-cCCCCCCC-------------CCCCCCHHHHHHHcCCHHHHHHHH
Confidence 4567788899999999999999 99999999999 78998876 588999999999999999999999
Q ss_pred hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911 94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD-PDCVDANGHHPIDVIVLPPKLDSMRAILEE 166 (724)
Q Consensus 94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd-~n~~D~~G~TPLhlAa~~G~~eivk~LLe~ 166 (724)
++ |+++|.. +..|.||||+|+..|+ .++|++|+++|++ ++.+|..|.||||+|+..|+.++++.|++.
T Consensus 91 ~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 91 EF-QADVNIE-DNEGNLPLHLAAKEGH---LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp HT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred Hc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 99 9999999 9999999999999999 9999999999998 599999999999999999999988877764
No 80
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.89 E-value=6.1e-23 Score=201.02 Aligned_cols=134 Identities=22% Similarity=0.261 Sum_probs=126.9
Q ss_pred ccCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHH
Q 004911 14 DMNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLIL 93 (724)
Q Consensus 14 ~m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLL 93 (724)
+.+.+++..+..|.||||+|+..|+.++|++|++ .|++++.. +..|.||||+|+..|+.++|++||
T Consensus 56 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll 121 (192)
T 2rfm_A 56 ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS-KGSNVNTK-------------DFSGKTPLMWSIIFGYSEMSYFLL 121 (192)
T ss_dssp HHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HhccccccccccCccHHHHHHHcCCHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCHHHHHHHH
Confidence 3467788899999999999999999999999999 68888876 588999999999999999999999
Q ss_pred hcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911 94 LHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE 166 (724)
Q Consensus 94 e~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~ 166 (724)
++ |++++.. +..|.||||+|+..|+ .++|++|+++|++++.+|..|.||||+|+..|+.++++.|++.
T Consensus 122 ~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 122 EH-GANVNDR-NLEGETPLIVASKYGR---SEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp HT-TCCSSCC-CTTCCCHHHHHHHHTC---HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HC-CCCCCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 99 9999999 9999999999999999 9999999999999999999999999999999999999999885
No 81
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=8e-23 Score=184.52 Aligned_cols=123 Identities=37% Similarity=0.519 Sum_probs=116.9
Q ss_pred CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 004911 25 DSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSC 104 (724)
Q Consensus 25 ~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~ 104 (724)
+|.||||.|+..|+.++|++|++ .+.+++.. +..|.||||+|+..|+.+++++|+++ |++++..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~- 64 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE-AGADVNAK-------------DKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK- 64 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH-HTCCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-
T ss_pred CCccHHHHHHHcCcHHHHHHHHH-cCCCCCCc-------------CCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCccc-
Confidence 58999999999999999999999 68888776 57899999999999999999999999 9999999
Q ss_pred CCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911 105 GSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE 166 (724)
Q Consensus 105 d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~ 166 (724)
+..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..|+.++++.|++.
T Consensus 65 ~~~g~t~l~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 65 DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCh---HHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 9999999999999999 9999999999999999999999999999999999999988875
No 82
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=1.2e-23 Score=195.24 Aligned_cols=125 Identities=28% Similarity=0.342 Sum_probs=114.5
Q ss_pred CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 004911 17 NNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHS 96 (724)
Q Consensus 17 ~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~ 96 (724)
+|+ ..|.+|.||||+|+..|++++|++||+ .|++++.. +..|+||||+||..|+.+++++||++
T Consensus 2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~~~~Ll~~- 65 (137)
T 3c5r_A 2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDPNVK-------------DHAGWTPLHEACNHGHLKVVELLLQH- 65 (137)
T ss_dssp --C-CCCTTCCCHHHHHHHHTCHHHHHHHHH-TTCCSCCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT-
T ss_pred CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCcC-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-
Confidence 345 678999999999999999999999999 78888876 58899999999999999999999999
Q ss_pred CCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHH
Q 004911 97 SADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMR 161 (724)
Q Consensus 97 GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk 161 (724)
|++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+..+..++++
T Consensus 66 g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~ 126 (137)
T 3c5r_A 66 KALVNTT-GYQNDSPLHDAAKNGH---VDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLL 126 (137)
T ss_dssp TCCTTCC-CGGGCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHS
T ss_pred CCcccCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHh
Confidence 9999999 9999999999999999 99999999999999999999999999999866655443
No 83
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.89 E-value=5.8e-23 Score=193.90 Aligned_cols=130 Identities=22% Similarity=0.236 Sum_probs=123.1
Q ss_pred CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 004911 16 NNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLH 95 (724)
Q Consensus 16 ~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~ 95 (724)
+.+++..+..|.||||+ |..|+.++|++|++ .|++++.. +..|+||||+||..|+.++|++|+++
T Consensus 26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~ 90 (156)
T 1bd8_A 26 LVHPDALNRFGKTALQV-MMFGSTAIALELLK-QGASPNVQ-------------DTSGTSPVHDAARTGFLDTLKVLVEH 90 (156)
T ss_dssp CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CcCccccCCCCCcHHHH-HHcCCHHHHHHHHH-CCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 45788899999999999 99999999999999 79999877 58899999999999999999999999
Q ss_pred CCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911 96 SSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE 166 (724)
Q Consensus 96 ~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~ 166 (724)
|++++.. +..|.||||+|+..|+ .++|++|+++ ++++.+|..|.||||+|+..|+.++++.|++.
T Consensus 91 -g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 91 -GADVNVP-DGTGALPIHLAVQEGH---TAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp -TCCSCCC-CTTSCCHHHHHHHHTC---HHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred -CCCCCCc-CCCCCcHHHHHHHhCh---HHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999 9999999999999999 9999999999 99999999999999999999999999988763
No 84
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.89 E-value=8.2e-23 Score=194.99 Aligned_cols=131 Identities=27% Similarity=0.335 Sum_probs=120.7
Q ss_pred cCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHh
Q 004911 15 MNNNSTAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILL 94 (724)
Q Consensus 15 m~~di~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe 94 (724)
...+++..+..|.||||+|+..|+.++|++|++ .|++++.. +..|+||||+|+..|+.++|++||+
T Consensus 31 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~ 96 (165)
T 3twr_A 31 QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ-HGADVHAK-------------DKGGLVPLHNACSYGHYEVAELLVK 96 (165)
T ss_dssp TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCccccccCCCCHHHHHHHcChHHHHHHHHh-cCCCCCcc-------------CCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 445667788889999999999999999999999 78998877 5889999999999999999999999
Q ss_pred cCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHH
Q 004911 95 HSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILE 165 (724)
Q Consensus 95 ~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe 165 (724)
+ |+++|.. +..|+||||+|+..|+ .+++++|+++|++++.+|..|.||||+|+. ++.++++.|++
T Consensus 97 ~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~ 161 (165)
T 3twr_A 97 H-GAVVNVA-DLWKFTPLHEAAAKGK---YEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRG 161 (165)
T ss_dssp T-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred C-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence 9 9999999 9999999999999999 999999999999999999999999999776 88877776654
No 85
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=3.2e-22 Score=212.55 Aligned_cols=149 Identities=16% Similarity=0.180 Sum_probs=123.7
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCC
Q 004911 23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLKLILLHSSAD 99 (724)
Q Consensus 23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVklLLe~~GAD 99 (724)
.....++|+.|+..|+++.|+.||+ .|.+++..- . ....+..|+||||+||.. |++++|++||++ |++
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~--~-----~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~-gad 218 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPL--P-----GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGH 218 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCE--E-----CSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH-SSC
T ss_pred cCchHHHHhhhhhccCHHHHHHHHh-cCCcccccC--C-----CcccCCCCccHHHHHHHhcccCcHHHHHHHHhc-CCC
Confidence 3445688999999999999999998 888888630 0 001257899999999997 899999999999 999
Q ss_pred cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhc
Q 004911 100 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVAS 179 (724)
Q Consensus 100 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa 179 (724)
+|.. |.+|+||||+|+..|+ .++|++||++|||++.+|.+|.||||+|+..|+.+++++|++....
T Consensus 219 vn~~-d~~G~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------- 284 (301)
T 2b0o_E 219 LDAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG---------- 284 (301)
T ss_dssp TTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------
T ss_pred CCCC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------
Confidence 9999 9999999999999999 9999999999999999999999999999999999999988886332
Q ss_pred ccccccccccCCCCCCCCChhchhHhcCCC
Q 004911 180 GAEHNLTVSIGSSNSDYSSPLLTASASGSP 209 (724)
Q Consensus 180 ~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~ 209 (724)
.|.||||+|+..|+.
T Consensus 285 ---------------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 285 ---------------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp ---------------TTSSCCC--------
T ss_pred ---------------CCCChhHHHHhcCCc
Confidence 368999999998863
No 86
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=4.9e-23 Score=201.22 Aligned_cols=140 Identities=25% Similarity=0.256 Sum_probs=126.2
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 004911 23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 102 (724)
Q Consensus 23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~ 102 (724)
+.+|.||||.|+..|++++|+.||+ +.++|.. |..|+||||+||..|+.++|++||++ |+++|.
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-------------d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~ 104 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLDH 104 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-------------CTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence 5688999999999999999999999 7788876 68999999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccc
Q 004911 103 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE 182 (724)
Q Consensus 103 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~ 182 (724)
..+..|+||||+|+..|+ .+++++||++|++++.+|..|+||||+|+..++
T Consensus 105 ~~~~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~-------------------------- 155 (183)
T 3deo_A 105 RDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILK-------------------------- 155 (183)
T ss_dssp CCSSSSCCHHHHHHHTTC---HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH--------------------------
T ss_pred CCCCCCCCHHHHHHhcCc---HHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc--------------------------
Confidence 833899999999999999 999999999999999999999999999985221
Q ss_pred cccccccCCCCCCCCChhchhHhcCCCchhhhhcC
Q 004911 183 HNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS 217 (724)
Q Consensus 183 ~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad 217 (724)
...+.++|++|+..|+.++++.|.+
T Consensus 156 ----------~~~~~~~l~~a~~~~~~~i~~~L~~ 180 (183)
T 3deo_A 156 ----------TTPKGNPMQFGRRIGLEKVINVLEG 180 (183)
T ss_dssp ----------TCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred ----------CcccccHHHHHHHcCHHHHHHHHHH
Confidence 1235899999999999999887764
No 87
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=5.4e-23 Score=210.91 Aligned_cols=142 Identities=25% Similarity=0.248 Sum_probs=127.9
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 004911 23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 102 (724)
Q Consensus 23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~ 102 (724)
+.+|.||||+||..|++++|+.||+ ++++|.. +..|+||||+||..|+.++|++||++ |+++|.
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-------------d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~ 105 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE--DRDVDAV-------------DENGRTALLFVAGLGSDKCVRLLAEA-GADLDH 105 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-------------CTTSCBHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-------------CCCCCCHHHHHHHCCCHHHHHHHHHc-CCCCCc
Confidence 4578999999999999999999999 7888876 58899999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccc
Q 004911 103 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAE 182 (724)
Q Consensus 103 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~ 182 (724)
..+..|+||||+|+..|+ .++|++||++|++++.+|..|+||||+|+..++
T Consensus 106 ~~~~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-------------------------- 156 (244)
T 3ui2_A 106 RDMRGGLTALHMAAGYVR---PEVVEALVELGADIEVEDERGLTALELAREILK-------------------------- 156 (244)
T ss_dssp CCSSSCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT--------------------------
T ss_pred CCCCCCCCHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh--------------------------
Confidence 933889999999999999 999999999999999999999999999984111
Q ss_pred cccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911 183 HNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 219 (724)
Q Consensus 183 ~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~ 219 (724)
...+.||||+|+..|+.++++.+.+..
T Consensus 157 ----------~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 157 ----------TTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp ----------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 135689999999999999988887643
No 88
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.87 E-value=5.9e-23 Score=190.73 Aligned_cols=125 Identities=22% Similarity=0.267 Sum_probs=115.6
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCC-CCcHH
Q 004911 70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDAN-GHHPI 148 (724)
Q Consensus 70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~-G~TPL 148 (724)
+..|.||||+||..|+.++|++||++ |+++|.. +..|+||||+|+. |+ .++|++|+++|++++.+|.. |+|||
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~-~~---~~~v~~Ll~~g~~~~~~~~~~g~t~L 82 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLEA-GADPNAL-NRFGRRPIQVMMM-GS---AQVAELLLLHGAEPNCADPATLTRPV 82 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTCCTTTTTSTT-SC---HHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHHc-CCCcCCc-CCCCCCHHHHHHc-CC---HHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence 68999999999999999999999999 9999999 9999999999999 99 99999999999999999999 99999
Q ss_pred HHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911 149 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 219 (724)
Q Consensus 149 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~ 219 (724)
|+|+..|+.++++.|++ .|+ +++..|..|.||||+|+..++.+++++|++.+
T Consensus 83 ~~A~~~~~~~~v~~Ll~----~ga---------------~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHR----AGA---------------RLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp HHHHHHTCHHHHHHHHH----TCC---------------CCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH----cCC---------------CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 99999999998887776 342 46677899999999999999999998887654
No 89
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=1.8e-22 Score=184.01 Aligned_cols=112 Identities=27% Similarity=0.389 Sum_probs=104.4
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCccc
Q 004911 23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNV 102 (724)
Q Consensus 23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~ 102 (724)
+..|.|+||+|+..|++++|+.||+ .+.+++.. +..|+||||+||..|+.++|++||++ |+++|.
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~ 68 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVA-KGEDVNRT-------------LEGGRKPLHYAADCGQLEILEFLLLK-GADINA 68 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSC-------------CTTSSCHHHHHHHTTCHHHHHHHHTT-TCCTTC
T ss_pred ccccchHHHHHHHcCCHHHHHHHHH-cCCCcCcc-------------CCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCc
Confidence 4568899999999999999999999 78888876 58899999999999999999999999 999999
Q ss_pred ccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhc
Q 004911 103 SCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVL 153 (724)
Q Consensus 103 ~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~ 153 (724)
. |..|+||||+|+..|+ .++|++|+++|++++.+|..|.||||+|..
T Consensus 69 ~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 69 P-DKHHITPLLSAVYEGH---VSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp C-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred C-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 9 9999999999999999 999999999999999999999999999954
No 90
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.87 E-value=1e-22 Score=201.49 Aligned_cols=139 Identities=11% Similarity=0.079 Sum_probs=122.2
Q ss_pred CCCCCCC-CCCchHHHHHHHcCCH----HHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCC------
Q 004911 17 NNSTAET-EDSFTSMLELASNNDV----EGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGS------ 85 (724)
Q Consensus 17 ~di~~~d-~~g~TpLh~AA~~G~l----e~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~------ 85 (724)
.+++..+ ..|.||||+|+..|+. ++|++||+ .|+++|.. +.+|+||||+|+..|+
T Consensus 28 ~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~-~Gadvn~~-------------d~~g~TpLh~a~~~~~~~~~~~ 93 (186)
T 3t8k_A 28 KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN-KGADIKSR-------------TKEGTTLFFPLFQGGGNDITGT 93 (186)
T ss_dssp HSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH-TTCCSSCC-------------CTTCCCTHHHHHHHCTTCHHHH
T ss_pred cCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH-CCCCCCCC-------------CCCCCcHHHHHHHcCCcchhhH
Confidence 3445555 7799999999999985 58999999 89999987 6899999999999997
Q ss_pred HHHHHHHHhcCCCCcccccCCCCC-cHHHHHHhCCCC--CHHHHHHHHHH-CCCCCCCCCCCCCcHHHHHhcCCCHHHHH
Q 004911 86 VDVLKLILLHSSADVNVSCGSDRT-TALHCAASGGSA--NVVDVVRLLLS-AGADPDCVDANGHHPIDVIVLPPKLDSMR 161 (724)
Q Consensus 86 ~evVklLLe~~GADVN~~~d~~G~-TPLH~Aa~~G~~--~~~eiVklLLe-~GAd~n~~D~~G~TPLhlAa~~G~~eivk 161 (724)
.++|++||++ |+|||.+ |..|. ||||+|+..+.. ...+++++||+ +|+|++.+|..|+||||+|+..|+.++++
T Consensus 94 ~~iv~~Ll~~-Gadin~~-d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~ 171 (186)
T 3t8k_A 94 TELCKIFLEK-GADITAL-YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171 (186)
T ss_dssp HHHHHHHHHT-TCCSSSC-BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHC-CCCCCcc-CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence 6899999999 9999999 99999 999999995542 12679999999 99999999999999999999999999999
Q ss_pred HHHHHHHcCC
Q 004911 162 AILEEVFGSK 171 (724)
Q Consensus 162 ~LLe~Ll~~g 171 (724)
.|++++.+.+
T Consensus 172 ~L~~~~~~~~ 181 (186)
T 3t8k_A 172 MMEDYIKKYN 181 (186)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9998765444
No 91
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.86 E-value=3.8e-22 Score=189.64 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=113.0
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCc-HH
Q 004911 70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHH-PI 148 (724)
Q Consensus 70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~T-PL 148 (724)
+..|.||||+||..|+.++|++||++ |+++|.. +..|+||||+|+ .|+ .++|++||++|++++.+|..|+| ||
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~-~~~---~~~v~~Ll~~g~~~~~~d~~g~ttpL 82 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEA-GANPNAP-NSYGRRPIQVMM-MGS---ARVAELLLLHGAEPNCADPATLTRPV 82 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCC-CSSSCCTTTSSC-TTC---HHHHHHHHTTTCCCCCCCTTTCCCHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCC-CCCCCCHHHHHH-cCC---HHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence 57899999999999999999999999 9999999 999999999985 888 99999999999999999999999 99
Q ss_pred HHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCC----CccccC
Q 004911 149 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS----PMALKF 224 (724)
Q Consensus 149 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~----~a~~~~ 224 (724)
|+|+..|+.++++.|++. |+ +++..|..|.||||+|+..|+.+++++|+.. +..+..
T Consensus 83 ~~A~~~~~~~~v~~Ll~~----ga---------------~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~ 143 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRA----GA---------------RLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHA 143 (156)
T ss_dssp HHHHHHTCHHHHHHHHHH----TC---------------CSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------
T ss_pred HHHHHCCCHHHHHHHHHc----CC---------------CCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcC
Confidence 999999999999888875 32 5667789999999999999999997777654 455666
Q ss_pred CCCccc
Q 004911 225 NDVSFG 230 (724)
Q Consensus 225 g~TpLh 230 (724)
|.|+.+
T Consensus 144 g~t~~~ 149 (156)
T 1bi7_B 144 RIDAAE 149 (156)
T ss_dssp ------
T ss_pred cCcccc
Confidence 777655
No 92
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.86 E-value=7.8e-24 Score=232.25 Aligned_cols=178 Identities=13% Similarity=0.058 Sum_probs=145.0
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC--
Q 004911 22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD-- 99 (724)
Q Consensus 22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD-- 99 (724)
.+.++.||||+||..|++++|++||+ .|+..... ..++..|.||||+||.+|+.++|++||++ |+|
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~-~ga~~~~~----------~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~-gad~~ 155 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCL-LLTSDEIV----------KVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEI 155 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTT-C--CCSSC----------C--CHHHHHHHHHHHHTTCHHHHHHHHHS-CTTTH
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHH-cCCcHHHH----------HHhccCCCCHHHHHHHcCCHHHHHHHHhC-CCCcc
Confidence 34566799999999999999999999 55521110 01134578999999999999999999999 876
Q ss_pred -cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCC--CCCCCCcHHHHHh-cCCCHHHHHHHHHHHHcCCCCch
Q 004911 100 -VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDC--VDANGHHPIDVIV-LPPKLDSMRAILEEVFGSKNSSV 175 (724)
Q Consensus 100 -VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~--~D~~G~TPLhlAa-~~G~~eivk~LLe~Ll~~ga~~~ 175 (724)
++.. +.+ .||||+||..|+ .++|++|+++|++++. .|..|.||||+|+ ..|+.++++.|++. |+
T Consensus 156 ~~~i~-~~~-~TpLh~Aa~~G~---~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~----ga--- 223 (376)
T 2aja_A 156 MAMIQ-AEN-YHAFRLAAENGH---LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC----PV--- 223 (376)
T ss_dssp HHHHS-HHH-HHHHHHHHHTTC---HHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS----HH---
T ss_pred ccccC-CCC-CCHHHHHHHCCC---HHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC----CC---
Confidence 2332 223 999999999999 9999999999999988 8999999999999 99999999887762 20
Q ss_pred hhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccCCCCccccccccCCCCCCC
Q 004911 176 VVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDP 242 (724)
Q Consensus 176 ~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~ 242 (724)
.|.||||+|+..|+.+++++|+..++.....+++++.|+..|+.+++.
T Consensus 224 -------------------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l~~A~~~g~~~vv~ 271 (376)
T 2aja_A 224 -------------------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVT 271 (376)
T ss_dssp -------------------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSS
T ss_pred -------------------ccchHHHHHHHCCCHHHHHHHHhcCcccccccHHHHHHHHCCChhhhc
Confidence 168999999999999999999887765555667899999999998764
No 93
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.86 E-value=8.7e-22 Score=182.83 Aligned_cols=125 Identities=23% Similarity=0.324 Sum_probs=114.6
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911 70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID 149 (724)
Q Consensus 70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh 149 (724)
...+.||||+||..|+.++|++||++ |+++|.. +..|+||||+|+..|+ .++|++|+++|++++.+|..|.||||
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~t~L~ 85 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN-GADVNAK-DEYGLTPLYLATAHGH---LEIVEVLLKNGADVNAVDAIGFTPLH 85 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 45688999999999999999999999 9999999 9999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCC
Q 004911 150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSS 218 (724)
Q Consensus 150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~ 218 (724)
+|+..|+.++++.|++. |+ +++..|..|.||||+|+..|+.++++.|++.
T Consensus 86 ~A~~~~~~~~v~~Ll~~----g~---------------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKH----GA---------------DVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHHHTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHc----CC---------------CCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 99999999988877763 42 4567789999999999999999999988764
No 94
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=4.4e-22 Score=199.68 Aligned_cols=127 Identities=21% Similarity=0.278 Sum_probs=114.3
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 004911 22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVN 101 (724)
Q Consensus 22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN 101 (724)
.+.+|.||||+||..|++++|+.||+ .|++++.. +..|+||||+||..|+.++|++||+..|+++|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~-------------~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~ 134 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGL-------------DKAGSTALYWACHGGHKDIVEMLFTQPNIELN 134 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC
T ss_pred cccccccccccccccCcHHHHHHHHh-CCCCcccc-------------CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc
Confidence 34567899999999999999999999 88998876 58899999999999999999999998799999
Q ss_pred cccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911 102 VSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE 166 (724)
Q Consensus 102 ~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~ 166 (724)
.. |..|+||||+|+..|+ .++|++||++|++++.+|..|.||||+|+..++.++++.+++.
T Consensus 135 ~~-d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~ 195 (222)
T 3ehr_A 135 QQ-NKLGDTALHAAAWKGY---ADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195 (222)
T ss_dssp CC-CTTSCCHHHHHHHHTC---HHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred cc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence 99 9999999999999999 9999999999999999999999999999998877777665553
No 95
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.85 E-value=1.7e-21 Score=180.67 Aligned_cols=124 Identities=20% Similarity=0.164 Sum_probs=111.6
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911 70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID 149 (724)
Q Consensus 70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh 149 (724)
+.+|+||||+||..|+.++|++||+. |++++.. +..|+||||+|+..|+ .+++++|+++|++++.+|..|+||||
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~L~ 81 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQN-GSDPNVK-DHAGWTPLHEACNHGH---LKVVELLLQHKALVNTTGYQNDSPLH 81 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSCCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcC-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCcccCcCCCCCCHHH
Confidence 68899999999999999999999999 9999999 9999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcC
Q 004911 150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVS 217 (724)
Q Consensus 150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad 217 (724)
+|+..|+.++++.|++. |+ +++..|..|.||||+|+..+..++++.+..
T Consensus 82 ~A~~~~~~~~v~~Ll~~----ga---------------~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSY----GA---------------SRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp HHHHTTCHHHHHHHHHT----TC---------------CTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred HHHHcCCHHHHHHHHHc----CC---------------CCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 99999999988877763 42 456778899999999998888777665543
No 96
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.85 E-value=3.3e-21 Score=173.84 Aligned_cols=125 Identities=34% Similarity=0.513 Sum_probs=114.9
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 004911 72 EHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVI 151 (724)
Q Consensus 72 ~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlA 151 (724)
+|+||||+|+..|+.++|++|+++ |++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~~~~g~t~l~~A 75 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLA 75 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH-TCCTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc-CCCCCCc-CCCCCcHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCcHHHHH
Confidence 489999999999999999999999 9999998 9999999999999999 9999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc
Q 004911 152 VLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM 220 (724)
Q Consensus 152 a~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a 220 (724)
+..|+.++++.|++. |+ +++..|..|.||||+|+..|+.+++++|++.++
T Consensus 76 ~~~~~~~~~~~Ll~~----g~---------------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 76 ARNGHLEVVKLLLEA----GA---------------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HHTTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHcChHHHHHHHHHc----CC---------------CCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 999999988877763 32 456778899999999999999999998887653
No 97
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.83 E-value=1.4e-20 Score=205.74 Aligned_cols=131 Identities=20% Similarity=0.248 Sum_probs=118.6
Q ss_pred CCCCCCCchHHHHHHHc-CCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911 20 TAETEDSFTSMLELASN-NDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 98 (724)
Q Consensus 20 ~~~d~~g~TpLh~AA~~-G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 98 (724)
+....++.|+||.|+.. |++++|+.||+ .|+++|... .+.+|.||||+||..|++++|++||++ |+
T Consensus 193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~-----------~~~~g~TpLh~Aa~~g~~~iv~~LL~~-Ga 259 (368)
T 3jue_A 193 DLGSLHPGALLFRASGHPPSLPTMADALA-HGADVNWVN-----------GGQDNATPLIQATAANSLLACEFLLQN-GA 259 (368)
T ss_dssp ----CCHHHHHHHHTSSSCCHHHHHHHHH-TTCCTTCCC-----------TTTTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred ccccCCCCcHHHHHHHccCCHHHHHHHHH-cCCCCCccc-----------cccCCCCHHHHHHHCCCHHHHHHHHHc-CC
Confidence 34455677999999999 99999999999 899998762 127899999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHH
Q 004911 99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV 167 (724)
Q Consensus 99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~L 167 (724)
|+|.. |..|+||||+|+..|+ .++|++||++||+++.+|.+|.||||+|+..|+.+++++|++..
T Consensus 260 dvn~~-d~~G~TpLh~A~~~g~---~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 260 NVNQA-DSAGRGPLHHATILGH---TGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp CTTCC-CTTSCCHHHHHHHHTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCC-CCCCCCHHHHHHHcCc---HHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999 9999999999999999 99999999999999999999999999999999999999888764
No 98
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.83 E-value=7.6e-21 Score=173.16 Aligned_cols=116 Identities=21% Similarity=0.244 Sum_probs=102.7
Q ss_pred CCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911 70 VSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPID 149 (724)
Q Consensus 70 d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLh 149 (724)
+..|.||||+|+..|+.++|++||+. |+++|.. +..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~-~~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~g~~~~~~d~~g~tpL~ 78 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRT-LEGGRKPLHYAADCGQ---LEILEFLLLKGADINAPDKHHITPLL 78 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSC-CTTSSCHHHHHHHTTC---HHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc-CCCcCcc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCHHH
Confidence 45788999999999999999999999 9999999 9999999999999999 99999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCC
Q 004911 150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSP 209 (724)
Q Consensus 150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~ 209 (724)
+|+..|+.++++.|++. |+ +++..|..|.||||+|+..+..
T Consensus 79 ~A~~~~~~~~v~~Ll~~----ga---------------~~~~~~~~g~t~l~~A~~~~~~ 119 (123)
T 3aaa_C 79 SAVYEGHVSCVKLLLSK----GA---------------DKTVKGPDGLTAFEATDNQAIK 119 (123)
T ss_dssp HHHHHTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHCCCHHHH
T ss_pred HHHHcCCHHHHHHHHHc----CC---------------CCCCcCCCCCCHHHHhCCHHHH
Confidence 99999999988877763 42 4567789999999999655433
No 99
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.83 E-value=4.4e-20 Score=193.76 Aligned_cols=132 Identities=17% Similarity=0.255 Sum_probs=117.8
Q ss_pred CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCC
Q 004911 23 TEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATY---GSVDVLKLILLHSSAD 99 (724)
Q Consensus 23 d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~---G~~evVklLLe~~GAD 99 (724)
+....++|+.|+..|+++.++.+++ .|.+++..- .....+..|+||||+||.. |+.++|++||++ |++
T Consensus 127 ~~~~l~~l~~a~~~~d~~~~~~ll~-~g~~~~~~~-------~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~-ga~ 197 (278)
T 1dcq_A 127 TAAKLHSLCEAVKTRDIFGLLQAYA-DGVDLTEKI-------PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN-SGN 197 (278)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHH-TTCCTTSBC-------CCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH-CSC
T ss_pred cchhhhhhhhHhhhcccHHHHHHHH-hhcchhhhc-------cccccccCCCCcchHHHHhcccchHHHHHHHHHC-CCC
Confidence 3345689999999999999999999 788866531 0112257899999999999 899999999999 999
Q ss_pred cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHH
Q 004911 100 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEV 167 (724)
Q Consensus 100 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~L 167 (724)
+|.. |..|+||||+|+..|+ .++|++||++|||++.+|.+|.||||+|+..|+.++++.|++.+
T Consensus 198 in~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 198 LDKQ-TGKGSTALHYCCLTDN---AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp TTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999 9999999999999999 99999999999999999999999999999999999999888864
No 100
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=3.9e-20 Score=209.33 Aligned_cols=130 Identities=16% Similarity=0.190 Sum_probs=115.6
Q ss_pred CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHH---cCCHHHHHHHHhcCCCCc
Q 004911 24 EDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAAT---YGSVDVLKLILLHSSADV 100 (724)
Q Consensus 24 ~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~---~G~~evVklLLe~~GADV 100 (724)
....+.||.|+..|++++|+.||+ .|+++|.... ....+..|+||||+||. .|+.++|++||++ |+|+
T Consensus 130 ~~~~~~L~~A~~~g~~~~v~~ll~-~g~~~n~~~~-------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~-ga~v 200 (497)
T 3lvq_E 130 TPEPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQN-GGHL 200 (497)
T ss_dssp C-CHHHHHHHHHHTCHHHHHHHHH-TTCCSSSCBC-------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH-SCCT
T ss_pred cccHHHHHHHHhccCHHHHHHHHh-hcccccCCCC-------CcccccccchHHHHHHHhcccccHHHHHHHHHc-CCCC
Confidence 344588999999999999999999 7899886510 11225789999999976 8999999999999 9999
Q ss_pred ccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHH
Q 004911 101 NVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEE 166 (724)
Q Consensus 101 N~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~ 166 (724)
|.. |.+|+||||+||..|+ .++|++||++|||++.+|.+|+||||+|+..|+.++++.|++.
T Consensus 201 n~~-d~~g~TpLh~A~~~g~---~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 262 (497)
T 3lvq_E 201 DAK-AADGNTALHYAALYNQ---PDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA 262 (497)
T ss_dssp TCC-CSSSCCHHHHHTTTTC---HHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred Ccc-CCCCCcHHHHHHHcCC---HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 999 9999999999999999 9999999999999999999999999999999999888877663
No 101
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.82 E-value=2.4e-21 Score=189.17 Aligned_cols=171 Identities=22% Similarity=0.173 Sum_probs=133.3
Q ss_pred HHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHH
Q 004911 33 LASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTAL 112 (724)
Q Consensus 33 AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPL 112 (724)
|++.|..+++++|++....... .|..........+.+|.||||+||..|+.++|++||+ |+++|.. +..|+|||
T Consensus 7 aa~~~~~~~~~~li~~~~~~~~---~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L 80 (183)
T 3deo_A 7 GSRTAGEGAMEYLIEWKDGHSP---SWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTAL 80 (183)
T ss_dssp EEEEETTTEEEEEEEETTCCCC---EEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT--TSCTTCC-CTTSCCHH
T ss_pred HHHhcCCchhHHHHHHhCCCCc---cccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh--cCCCCCc-CCCCCCHH
Confidence 3444555566666653111111 1222222233345689999999999999999999998 8999998 99999999
Q ss_pred HHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCC
Q 004911 113 HCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGS 191 (724)
Q Consensus 113 H~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~ 191 (724)
|+|+..|+ .++|++||++|++++.+| ..|+||||+|+..|+.++++.|++. |+ +++.
T Consensus 81 ~~A~~~~~---~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~----ga---------------~~~~ 138 (183)
T 3deo_A 81 LFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVEL----GA---------------DIEV 138 (183)
T ss_dssp HHHHHHTC---HHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHH----TC---------------CTTC
T ss_pred HHHHHcCC---HHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHc----CC---------------CCcC
Confidence 99999999 999999999999999998 8999999999999999999888875 32 4567
Q ss_pred CCCCCCChhchhHhcCCCchhhhhcCCCccccCCCCccccccccCCCCCCCCC
Q 004911 192 SNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEKREYPIDPSL 244 (724)
Q Consensus 192 ~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~TpLh~Aa~~g~~~i~~~L 244 (724)
.|..|.||||+|+..++. ..+.++|++|+..|..+++..|
T Consensus 139 ~d~~g~tpl~~A~~~~~~-------------~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 139 EDERGLTALELAREILKT-------------TPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp CCTTSCCHHHHHHHHHHT-------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHhccC-------------cccccHHHHHHHcCHHHHHHHH
Confidence 799999999999998754 3457788888877766665544
No 102
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.81 E-value=1.6e-20 Score=188.22 Aligned_cols=167 Identities=18% Similarity=0.193 Sum_probs=128.3
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCC---------cccCCCCChHHHHHHHcCCHHHHHHH
Q 004911 22 ETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGS---------KQMVSEHRTPLMVAATYGSVDVLKLI 92 (724)
Q Consensus 22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~---------~~~d~~G~TPLH~AA~~G~~evVklL 92 (724)
.+.++.+++.+++..|++..|..+.+ .+.|.+...+. ...+.+|.||||+||..|+.++|++|
T Consensus 21 ~d~~~~~~~el~~~~Gd~~~v~~~~~--------~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~L 92 (222)
T 3ehr_A 21 YTFEPRTPDELYIEEGDIIYITDMSD--------TNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLREC 92 (222)
T ss_dssp SCCCCSSTTBCCCCTTCEEEEEECCS--------SSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHH
T ss_pred CCcCCCCCCcccccCCCEEEEecccc--------chhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHH
Confidence 34455566666666666543322221 22233332221 12356789999999999999999999
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHC-CCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCC
Q 004911 93 LLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSA-GADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK 171 (724)
Q Consensus 93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~-GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g 171 (724)
|+. |+++|.. +..|+||||+||..|+ .++|++||++ |++++.+|..|+||||+|+..|+.++++.|++. |
T Consensus 93 l~~-g~~~~~~-~~~g~t~L~~A~~~~~---~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~----g 163 (222)
T 3ehr_A 93 LDN-RVGVNGL-DKAGSTALYWACHGGH---KDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK----G 163 (222)
T ss_dssp HHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHH----T
T ss_pred HhC-CCCcccc-CCCCCCHHHHHHHcCC---HHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHc----C
Confidence 998 9999998 9999999999999999 9999999999 999999999999999999999999999888875 3
Q ss_pred CCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCc
Q 004911 172 NSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPM 220 (724)
Q Consensus 172 a~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a 220 (724)
+ +++..|..|.||||+|+..|+.++++.++..++
T Consensus 164 a---------------~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 164 A---------------RTDLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp C---------------CSCCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred C---------------CCccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 2 456778899999999999998888887776653
No 103
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.81 E-value=2e-21 Score=199.13 Aligned_cols=141 Identities=24% Similarity=0.164 Sum_probs=126.1
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCC-CCCCcHHH
Q 004911 71 SEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVD-ANGHHPID 149 (724)
Q Consensus 71 ~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D-~~G~TPLh 149 (724)
.+|.||||+||..|+.++|++||+ |+++|.. +..|+||||+|+..|+ .++|++||++|++++.+| ..|+||||
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~-d~~g~t~L~~A~~~g~---~~~v~~Ll~~ga~~~~~~~~~g~t~L~ 116 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE--DRDVDAV-DENGRTALLFVAGLGS---DKCVRLLAEAGADLDHRDMRGGLTALH 116 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT--TCCTTCB-CTTSCBHHHHHHHHTC---HHHHHHHHHTTCCTTCCCSSSCCCHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc--CCCCCCc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCCCCCCCHHH
Confidence 568999999999999999999998 8999999 9999999999999999 999999999999999998 88999999
Q ss_pred HHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccCCCCcc
Q 004911 150 VIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSF 229 (724)
Q Consensus 150 lAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~TpL 229 (724)
+|+..|+.++++.|++. |+ +++..|..|.||||+|+..+. ...+.|||
T Consensus 117 ~A~~~g~~~~v~~Ll~~----ga---------------~~~~~d~~g~t~l~~A~~~~~-------------~~~~~~~l 164 (244)
T 3ui2_A 117 MAAGYVRPEVVEALVEL----GA---------------DIEVEDERGLTALELAREILK-------------TTPKGNPM 164 (244)
T ss_dssp HHHHTTCHHHHHHHHHT----TC---------------CTTCCCTTCCCHHHHHHHHHT-------------TCCCSSHH
T ss_pred HHHHcCCHHHHHHHHHC----CC---------------CCCCCCCCCCcHHHHHHHHHh-------------ccCCCCHH
Confidence 99999999988877763 43 566789999999999998653 35689999
Q ss_pred ccccccCCCCCCCCCCcccc
Q 004911 230 GTGAEKREYPIDPSLPDIKN 249 (724)
Q Consensus 230 h~Aa~~g~~~i~~~L~d~ga 249 (724)
++|+..|+.+++..|.+.+.
T Consensus 165 ~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 165 QFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHE
T ss_pred HHHHHcChHHHHHHHHHhcc
Confidence 99999999999888876533
No 104
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.81 E-value=1.6e-21 Score=213.94 Aligned_cols=199 Identities=13% Similarity=0.054 Sum_probs=132.0
Q ss_pred CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCc
Q 004911 21 AETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADV 100 (724)
Q Consensus 21 ~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADV 100 (724)
..+..|.||||+||..|++++|++|++ .|++++..+. + +.+ .||||+||..|+.++|++||++ |+++
T Consensus 123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~-~gad~~~~~i--------~--~~~-~TpLh~Aa~~G~~eiv~~Ll~~-ga~~ 189 (376)
T 2aja_A 123 VIQAENYQAFRLAAENGHLHVLNRLCE-LAPTEIMAMI--------Q--AEN-YHAFRLAAENGHLHVLNRLCEL-APTE 189 (376)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHH-SCTTTHHHHH--------S--HHH-HHHHHHHHHTTCHHHHHHHHHS-CGGG
T ss_pred HhccCCCCHHHHHHHcCCHHHHHHHHh-CCCCcccccc--------C--CCC-CCHHHHHHHCCCHHHHHHHHHc-CCcc
Confidence 344568899999999999999999999 6765322110 0 112 8999999999999999999999 9998
Q ss_pred cc--ccCCCCCcHHHHHH-hCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCCC--Cch
Q 004911 101 NV--SCGSDRTTALHCAA-SGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSKN--SSV 175 (724)
Q Consensus 101 N~--~~d~~G~TPLH~Aa-~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~ga--~~~ 175 (724)
+. . +..|.||||+|+ ..|+ .++|++|+++|++ |.||||+|+..|+.++++.|++....... ...
T Consensus 190 ~~~~~-d~~g~TpL~~Aa~~~G~---~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~~l 258 (376)
T 2aja_A 190 ATAMI-QAENYYAFRWAAVGRGH---HNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAF 258 (376)
T ss_dssp HHHHH-HHHHHHHHHHHHSTTCC---HHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTT
T ss_pred chhcc-CCCCCCHHHHHHHHCCC---HHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHHHhcCcccccccHHH
Confidence 87 6 788999999999 9999 9999999998853 89999999999999999999886542210 001
Q ss_pred hhhccccc-c---------------------------------------cccccCCCCCCCCChhchhHhcCCCchhhhh
Q 004911 176 VVASGAEH-N---------------------------------------LTVSIGSSNSDYSSPLLTASASGSPPSPSRL 215 (724)
Q Consensus 176 ~~aa~~~~-~---------------------------------------l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~L 215 (724)
..++.... . ...........+.||||+|+..|+.++++.|
T Consensus 259 ~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lL 338 (376)
T 2aja_A 259 KLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL 338 (376)
T ss_dssp TTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH
T ss_pred HHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHH
Confidence 01110000 0 0000112233556788888888888888888
Q ss_pred cCCC-ccccCCCCccccccccCCCCCCCC
Q 004911 216 VSSP-MALKFNDVSFGTGAEKREYPIDPS 243 (724)
Q Consensus 216 ad~~-a~~~~g~TpLh~Aa~~g~~~i~~~ 243 (724)
+..+ +.+..++|++.+|...|+.++...
T Consensus 339 l~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 339 LSIPSVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp TTSHHHHHSCC------------------
T ss_pred HcChHHHHHHHHhccccccccccccHHHH
Confidence 8765 466678888887777777766554
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.4e-19 Score=156.92 Aligned_cols=88 Identities=42% Similarity=0.644 Sum_probs=47.9
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHh
Q 004911 73 HRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPIDVIV 152 (724)
Q Consensus 73 G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa 152 (724)
|+||||+||..|+.++|++||++ |+++|.+ |..|+||||+|+..|+ .++|++|+++|++++.+|..|+||||+|+
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~n~~-d~~g~t~L~~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHc-CCCCccc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 45555555555555555555555 5555555 5555555555555555 55555555555555555555555555555
Q ss_pred cCCCHHHHHHHHH
Q 004911 153 LPPKLDSMRAILE 165 (724)
Q Consensus 153 ~~G~~eivk~LLe 165 (724)
..|+.++++.|++
T Consensus 77 ~~~~~~~~~~Ll~ 89 (93)
T 1n0q_A 77 RNGHLEVVKLLLE 89 (93)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 5555555544443
No 106
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.80 E-value=6.8e-20 Score=194.58 Aligned_cols=141 Identities=14% Similarity=0.136 Sum_probs=119.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCCcccc-----cCCCCCcHHHHHHhC---CCCCHHHHHHHHHHCCCCCCCCCCCC
Q 004911 73 HRTPLMVAATYGSVDVLKLILLHSSADVNVS-----CGSDRTTALHCAASG---GSANVVDVVRLLLSAGADPDCVDANG 144 (724)
Q Consensus 73 G~TPLH~AA~~G~~evVklLLe~~GADVN~~-----~d~~G~TPLH~Aa~~---G~~~~~eiVklLLe~GAd~n~~D~~G 144 (724)
+.++||.|+..|++++|++||+. |+|++.. .+..|.||||+|+.. |+ +++|++||++|+++|.+|.+|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~---~~iv~~Ll~~gadvn~~d~~G 226 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQAS---LPLVDFIIQNGGHLDAKAADG 226 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHT-TCCTTSCEECSSSCSCEECHHHHHHHTCCTTT---HHHHHHHHHHSSCTTCCCTTC
T ss_pred hHHHHhhhhhccCHHHHHHHHhc-CCcccccCCCcccCCCCccHHHHHHHhcccCc---HHHHHHHHhcCCCCCCCCCCC
Confidence 45789999999999999999998 9999982 288999999999997 67 999999999999999999999
Q ss_pred CcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccC
Q 004911 145 HHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKF 224 (724)
Q Consensus 145 ~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~ 224 (724)
+||||+|+..|+.++++.|++ .|+ +++..|..|.||||+|+..|+.+++++|++.++. .
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~----~ga---------------d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--~ 285 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLK----GRA---------------LVGTVNEAGETALDIARKKHHKECEELLEQAQAG--T 285 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHH----TTC---------------CCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--T
T ss_pred CCHHHHHHHcCCHHHHHHHHH----cCC---------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--C
Confidence 999999999999998887776 343 5667899999999999999999999999887754 6
Q ss_pred CCCccccccccCCC
Q 004911 225 NDVSFGTGAEKREY 238 (724)
Q Consensus 225 g~TpLh~Aa~~g~~ 238 (724)
|.||||+|+..|+.
T Consensus 286 g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 286 FAFPLHVDYSWVIS 299 (301)
T ss_dssp TSSCCC--------
T ss_pred CCChhHHHHhcCCc
Confidence 89999999988753
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=3.8e-20 Score=166.28 Aligned_cols=110 Identities=30% Similarity=0.415 Sum_probs=100.3
Q ss_pred CCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCC
Q 004911 20 TAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSAD 99 (724)
Q Consensus 20 ~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GAD 99 (724)
.+.|.+|.||||+|+..|++++++.||+ .+++++.. |..|+||||+|+..|+.++|++||++ |++
T Consensus 3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~-------------d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~ 67 (115)
T 2l6b_A 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLS-KGADVNAR-------------SKDGNTPLHLAAKNGHAEIVKLLLAK-GAD 67 (115)
T ss_dssp -CCSCSSCCHHHHHHHHTCHHHHHHHTT-TTCCSSCC-------------CSSSCCTTHHHHTTTCHHHHHHHTTT-TCC
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHH-cCCCCCCc-------------CCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence 3578899999999999999999999999 78888876 58899999999999999999999999 999
Q ss_pred cccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH
Q 004911 100 VNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI 148 (724)
Q Consensus 100 VN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL 148 (724)
++.. +..|.||||+|+..|+ .+++++|+++|+++|.++..|.+|-
T Consensus 68 ~~~~-d~~g~tpl~~A~~~~~---~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 68 VNAR-SKDGNTPEHLAKKNGH---HEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp TTCC-CTTCCCTTHHHHTTTC---HHHHHHHHTTSSSHHHHSCCCC---
T ss_pred Cccc-CCCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCcCCccccccc
Confidence 9998 9999999999999999 9999999999999999999998874
No 108
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=2.3e-19 Score=155.64 Aligned_cols=75 Identities=40% Similarity=0.511 Sum_probs=68.7
Q ss_pred ccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCC
Q 004911 57 GLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGAD 136 (724)
Q Consensus 57 gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd 136 (724)
.+++......+..|.+|+||||+|+..|+.++|++||++ |++++.+ |.+|.||||+|+..|+ .+++++|+++||+
T Consensus 19 ~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~-d~~g~t~l~~A~~~~~---~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 19 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAK-DKNGRTPLHLAARNGH---LEVVKLLLEAGAY 93 (93)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCC-CTTSCCHHHHHHHTTC---HHHHHHHHHTTCC
T ss_pred HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCC
Confidence 345556667788899999999999999999999999999 9999999 9999999999999999 9999999999985
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.76 E-value=2.8e-18 Score=179.92 Aligned_cols=187 Identities=16% Similarity=0.093 Sum_probs=140.2
Q ss_pred CCCCCchHHHHHHHcCCHHHHHHHHhcCCC----------Cccccccc----cccccCCcc---cCCCCChHHHHHHHcC
Q 004911 22 ETEDSFTSMLELASNNDVEGFKRMLERDPS----------SVDEVGLW----YGRVNGSKQ---MVSEHRTPLMVAATYG 84 (724)
Q Consensus 22 ~d~~g~TpLh~AA~~G~le~Vk~LLe~~ga----------dIn~~gl~----~a~~~g~~~---~d~~G~TPLH~AA~~G 84 (724)
.|.-+.+.|+.+...|+..+.+.+...-.. +.....-| |....-... ......++|+.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 466778899999999998776655431110 00000001 111110000 1122357899999999
Q ss_pred CHHHHHHHHhcCCCCccccc-----CCCCCcHHHHHHhC---CCCCHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCC
Q 004911 85 SVDVLKLILLHSSADVNVSC-----GSDRTTALHCAASG---GSANVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPK 156 (724)
Q Consensus 85 ~~evVklLLe~~GADVN~~~-----d~~G~TPLH~Aa~~---G~~~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~ 156 (724)
+++.++.|++. |++++... +..|+||||+|+.. |+ .++|++||++|+++|.+|..|+||||+|+..|+
T Consensus 142 d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~---~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~ 217 (278)
T 1dcq_A 142 DIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTS---LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN 217 (278)
T ss_dssp CHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTT---HHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred ccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccch---HHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence 99999999999 99955331 78899999999999 77 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccCCCCcccccccc
Q 004911 157 LDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKFNDVSFGTGAEK 235 (724)
Q Consensus 157 ~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~g~TpLh~Aa~~ 235 (724)
.++++.|++ .|+ +++..|..|.||||+|+..|+.++++.|+..++ +.+++|.+++.
T Consensus 218 ~~~v~~Ll~----~ga---------------d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~v~~ 273 (278)
T 1dcq_A 218 AECLKLLLR----GKA---------------SIEIANESGETPLDIAKRLKHEHCEELLTQALS----GRFNSHVHVEY 273 (278)
T ss_dssp HHHHHHHHH----TTC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT----TCCCSSCCCCC
T ss_pred HHHHHHHHH----cCC---------------CCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC----CCCCcceeeec
Confidence 998887766 453 566789999999999999999999999987764 35666665543
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.74 E-value=2.2e-18 Score=154.67 Aligned_cols=92 Identities=30% Similarity=0.428 Sum_probs=87.1
Q ss_pred cCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH
Q 004911 69 MVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI 148 (724)
Q Consensus 69 ~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL 148 (724)
.|.+|+||||+||..|+.+++++||++ |++++.. +..|.||||+|+..|+ .+++++|+++|++++.+|..|.|||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~-d~~g~t~L~~A~~~~~---~~~~~~Ll~~g~~~~~~d~~g~tpl 79 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNAR-SKDGNTPLHLAAKNGH---AEIVKLLLAKGADVNARSKDGNTPE 79 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT-TCCSSCC-CSSSCCTTHHHHTTTC---HHHHHHHTTTTCCTTCCCTTCCCTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCc-CCCCCCHHHHHHHcCc---HHHHHHHHHcCCCCcccCCCCCCHH
Confidence 478999999999999999999999999 9999999 9999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHH
Q 004911 149 DVIVLPPKLDSMRAILE 165 (724)
Q Consensus 149 hlAa~~G~~eivk~LLe 165 (724)
|+|+..++.++++.|++
T Consensus 80 ~~A~~~~~~~~~~~Ll~ 96 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDA 96 (115)
T ss_dssp HHHHTTTCHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 99999999887776554
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.74 E-value=6.2e-18 Score=191.32 Aligned_cols=136 Identities=15% Similarity=0.173 Sum_probs=112.8
Q ss_pred CChHHHHHHHcCCHHHHHHHHhcCCCCcccc-----cCCCCCcHHHHHHh---CCCCCHHHHHHHHHHCCCCCCCCCCCC
Q 004911 73 HRTPLMVAATYGSVDVLKLILLHSSADVNVS-----CGSDRTTALHCAAS---GGSANVVDVVRLLLSAGADPDCVDANG 144 (724)
Q Consensus 73 G~TPLH~AA~~G~~evVklLLe~~GADVN~~-----~d~~G~TPLH~Aa~---~G~~~~~eiVklLLe~GAd~n~~D~~G 144 (724)
..+.||.|+..|++++|+.||+. |+|+|.. .+..|+||||+|+. .|+ .++|++||++|||+|.+|.+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~-g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~---~~~v~~Ll~~ga~vn~~d~~g 207 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN-GQDFGQPLPGPDAQAPEELVLHLAVKVANQAS---LPLVDFIIQNGGHLDAKAADG 207 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT-TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTT---HHHHHHHHHHSCCTTCCCSSS
T ss_pred cHHHHHHHHhccCHHHHHHHHhh-cccccCCCCCcccccccchHHHHHHHhccccc---HHHHHHHHHcCCCCCccCCCC
Confidence 34789999999999999999999 9999865 26789999999966 888 999999999999999999999
Q ss_pred CcHHHHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCCccccC
Q 004911 145 HHPIDVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSPMALKF 224 (724)
Q Consensus 145 ~TPLhlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~a~~~~ 224 (724)
+||||+|+..|+.++++.|++ .|+ +++..|..|.||||+|+..|+.+++++|+..++...
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~----~ga---------------~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~- 267 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLK----GRA---------------LVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF- 267 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHH----TCC---------------CCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC----
T ss_pred CcHHHHHHHcCCHHHHHHHHH----cCC---------------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC-
Confidence 999999999999998887766 453 567789999999999999999999999988875543
Q ss_pred CCCcccccc
Q 004911 225 NDVSFGTGA 233 (724)
Q Consensus 225 g~TpLh~Aa 233 (724)
.+|+|.+.
T Consensus 268 -~~~~h~~~ 275 (497)
T 3lvq_E 268 -AFPLHVDY 275 (497)
T ss_dssp ---------
T ss_pred -CCcceeec
Confidence 36777654
No 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.73 E-value=3.5e-18 Score=186.80 Aligned_cols=124 Identities=23% Similarity=0.251 Sum_probs=112.9
Q ss_pred CCChHHHHHHHc-CCHHHHHHHHhcCCCCcccccC--CCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCcHH
Q 004911 72 EHRTPLMVAATY-GSVDVLKLILLHSSADVNVSCG--SDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHHPI 148 (724)
Q Consensus 72 ~G~TPLH~AA~~-G~~evVklLLe~~GADVN~~~d--~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~TPL 148 (724)
.+.|+||.||.. |++++|++||++ |+|+|.. + ..|.||||+|+..|+ +++|++||++|+++|.+|..|+|||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~-Gadvn~~-~~~~~g~TpLh~Aa~~g~---~~iv~~LL~~Gadvn~~d~~G~TpL 272 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAH-GADVNWV-NGGQDNATPLIQATAANS---LLACEFLLQNGANVNQADSAGRGPL 272 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHT-TCCTTCC-CTTTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHc-CCCCCcc-ccccCCCCHHHHHHHCCC---HHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 345799999999 999999999999 9999998 6 899999999999999 9999999999999999999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHcCCCCchhhhcccccccccccCCCCCCCCChhchhHhcCCCchhhhhcCCC
Q 004911 149 DVIVLPPKLDSMRAILEEVFGSKNSSVVVASGAEHNLTVSIGSSNSDYSSPLLTASASGSPPSPSRLVSSP 219 (724)
Q Consensus 149 hlAa~~G~~eivk~LLe~Ll~~ga~~~~~aa~~~~~l~~~in~~d~~G~TPLh~Aa~~G~~eiVe~Lad~~ 219 (724)
|+|+..|+.+++++|++. |+ +++..|.+|.||||+|+..|+.+++++|+...
T Consensus 273 h~A~~~g~~~~v~~LL~~----Ga---------------d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 273 HHATILGHTGLACLFLKR----GA---------------DLGARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHHHHHTCHHHHHHHHHT----TC---------------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHC----cC---------------CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 999999999988877763 43 56678999999999999999999999887554
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=1.5e-17 Score=149.20 Aligned_cols=92 Identities=32% Similarity=0.441 Sum_probs=85.2
Q ss_pred cccCCCCChHHHHHHHcCCHHHHHHHHhcCCCCcccccCCCCCcHHHHHHhCCCCCHHHHHHHHHHCCCCCCCCCCCCCc
Q 004911 67 KQMVSEHRTPLMVAATYGSVDVLKLILLHSSADVNVSCGSDRTTALHCAASGGSANVVDVVRLLLSAGADPDCVDANGHH 146 (724)
Q Consensus 67 ~~~d~~G~TPLH~AA~~G~~evVklLLe~~GADVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklLLe~GAd~n~~D~~G~T 146 (724)
..++.+|.||||+||..|+.++|++||++ |+++|.. |..|.||||+|+..|+ .++|++||++|++++.+|..|+|
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~i~~~-d~~g~tpLh~A~~~~~---~~~v~~Ll~~ga~~~~~d~~g~t 92 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMAN-GADVAAK-DKNGSTPLHLAARNGH---LEVVKLLLEAGADVXAQDKFGKT 92 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHT-TCCTTCC-CTTCCCHHHHHHHTTC---HHHHHHHHHTTCCTTCCCTTSCC
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHc-CCCCCcc-CCCCCCHHHHHHHcCC---HHHHHHHHHcCCCccccccCCCc
Confidence 34578999999999999999999999999 9999999 9999999999999999 99999999999999999999999
Q ss_pred HHHHHhcCCCHHHHHHH
Q 004911 147 PIDVIVLPPKLDSMRAI 163 (724)
Q Consensus 147 PLhlAa~~G~~eivk~L 163 (724)
|||+|+..|+.++++.|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 99999999999988754
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.67 E-value=2e-16 Score=141.73 Aligned_cols=93 Identities=25% Similarity=0.324 Sum_probs=84.2
Q ss_pred CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccccccccCCcccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 004911 19 STAETEDSFTSMLELASNNDVEGFKRMLERDPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYGSVDVLKLILLHSSA 98 (724)
Q Consensus 19 i~~~d~~g~TpLh~AA~~G~le~Vk~LLe~~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G~~evVklLLe~~GA 98 (724)
....+.+|.|+||+||..|++++|++||+ .|++++.. |..|+||||+||..|+.++|++||++ |+
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~-------------d~~g~tpLh~A~~~~~~~~v~~Ll~~-ga 81 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMA-NGADVAAK-------------DKNGSTPLHLAARNGHLEVVKLLLEA-GA 81 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHH-TTCCTTCC-------------CTTCCCHHHHHHHTTCHHHHHHHHHT-TC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHH-cCCCCCcc-------------CCCCCCHHHHHHHcCCHHHHHHHHHc-CC
Confidence 45567899999999999999999999999 78998876 58999999999999999999999999 99
Q ss_pred CcccccCCCCCcHHHHHHhCCCCCHHHHHHHH
Q 004911 99 DVNVSCGSDRTTALHCAASGGSANVVDVVRLL 130 (724)
Q Consensus 99 DVN~~~d~~G~TPLH~Aa~~G~~~~~eiVklL 130 (724)
+++.. |..|+||||+|+..|+ .+++++|
T Consensus 82 ~~~~~-d~~g~tpl~~A~~~~~---~~~~~~L 109 (110)
T 2zgd_A 82 DVXAQ-DKFGKTAFDISIDNGN---EDLAEIL 109 (110)
T ss_dssp CTTCC-CTTSCCHHHHHHHHTC---HHHHHHH
T ss_pred Ccccc-ccCCCcHHHHHHHcCC---HHHHHHh
Confidence 99999 9999999999999999 9999987
No 115
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=98.72 E-value=3.9e-09 Score=89.29 Aligned_cols=61 Identities=36% Similarity=0.791 Sum_probs=29.1
Q ss_pred CccccCCCCCC-CCCcCCCCCCcccCCCcccccC---CccccccccCCCC---CCCCCcc-cccccCCCc
Q 004911 295 FHYSCVPCPDF-RKGACRRGDMCEYAHGVFECWL---HPAQYRTRLCKDG---TSCDRRV-CFFAHTAEE 356 (724)
Q Consensus 295 y~Ys~~~CP~~-rkG~C~~Gd~C~~aH~~~E~~~---hP~~yrT~~C~~~---~~C~~~~-C~faH~~~e 356 (724)
-.|...+|+.| +.|.|+.|+.|.|+|+..|+.. || .|+|++|+.| +.|++|. |.|+|..+|
T Consensus 8 ~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~~~-~~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 8 SRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANRHP-KYKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp SCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC----------------------------------
T ss_pred CCccchhCHHhhhCCCcCCCCCccCCCCChhhccccccc-cccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 35788999998 5899999999999999988874 44 7999999965 7899997 999999876
No 116
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.42 E-value=2.7e-08 Score=82.83 Aligned_cols=60 Identities=25% Similarity=0.659 Sum_probs=55.2
Q ss_pred CCCCCCCCCcCCCCC-CcccCCCcccccCCccccccccCCCC--CCCCCcccccccCCCcccc
Q 004911 300 VPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRP 359 (724)
Q Consensus 300 ~~CP~~rkG~C~~Gd-~C~~aH~~~E~~~hP~~yrT~~C~~~--~~C~~~~C~faH~~~e~r~ 359 (724)
..|.+|..|.|.+|+ .|.|+|...+.+.++..+++..|.+| +.|.++.|+|+|.+.+||.
T Consensus 7 ~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 7 EVCREYQRGNCNRGENDCRFAHPADSTMIDTNDNTVTVCMDYIKGRCSREKCKYFHPPAHLQA 69 (70)
T ss_dssp EBCHHHHTTCCSSCTTTCSSBCCCTTSCCBTTTTEEEBCHHHHTTCCCCTTCCSBCCCHHHHC
T ss_pred hhCHHHhcCCCCCCCCCCCCccCcccccccccCCcceeccccCcCCCCCCCcCeeCCHHHHhc
Confidence 469999999999999 59999999999988999999999997 8999999999999998873
No 117
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=1.4e-06 Score=77.15 Aligned_cols=61 Identities=26% Similarity=0.634 Sum_probs=54.9
Q ss_pred cCCCCCCCCCcCCCCC-CcccCCCcccccCCccccccccCCCC--CCCCCcccccccCCCcccc
Q 004911 299 CVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRP 359 (724)
Q Consensus 299 ~~~CP~~rkG~C~~Gd-~C~~aH~~~E~~~hP~~yrT~~C~~~--~~C~~~~C~faH~~~e~r~ 359 (724)
...|.+|..|.|.+|| .|.|+|...+....+...++..|.+| +.|.|+.|+|.|...+|+.
T Consensus 20 ~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~~~~~~~vC~~flkG~C~r~~C~y~H~~~~l~~ 83 (98)
T 2e5s_A 20 LEVCREFQRGNCARGETDCRFAHPADSTMIDTSDNTVTVCMDYIKGRCMREKCKYFHPPAHLQA 83 (98)
T ss_dssp EEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCTTTCEEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred hhhhHHHhcCcCCCCCCCCCCcCCchhccccccCCccccchhhccCCCCCCCcCccCChHHHHH
Confidence 4579999999999999 79999999888777778999999999 9999999999999888764
No 118
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=97.73 E-value=1.6e-05 Score=70.38 Aligned_cols=49 Identities=29% Similarity=0.552 Sum_probs=42.6
Q ss_pred ccccCCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCC---CCCCCcc-cccccCCCc
Q 004911 296 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCDRRV-CFFAHTAEE 356 (724)
Q Consensus 296 ~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~---~~C~~~~-C~faH~~~e 356 (724)
.+...+|..|..|.|.+|+.|.|.|. +..|+.| +.|++|. |.|+|....
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~------------~~~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHG------------DFPCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSS------------SSBCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred CCCCccCcccccCcCCCCCCCCCCCC------------CCcCcCcccCCcCCCCCCCcccCCCCc
Confidence 36778999999999999999999999 6779876 7899987 999998643
No 119
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.45 E-value=5.2e-05 Score=64.05 Aligned_cols=58 Identities=26% Similarity=0.523 Sum_probs=46.8
Q ss_pred cCccccCCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCC---CCCCCcccccccCCCccc
Q 004911 294 KFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCDRRVCFFAHTAEELR 358 (724)
Q Consensus 294 ~y~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~---~~C~~~~C~faH~~~e~r 358 (724)
...+....|..|..|.|.+|+.|.|+|.... -++..|++| +.|....|.|+|...+.+
T Consensus 5 ~~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~-------~~~~~C~~f~~~G~C~~~~C~f~H~~~~~~ 65 (77)
T 2d9n_A 5 SSGEKTVVCKHWLRGLCKKGDQCEFLHEYDM-------TKMPECYFYSKFGECSNKECPFLHIDPESK 65 (77)
T ss_dssp CSCCTTSBCHHHHTTCCSCTTSSSSBCSCCT-------TTSCBCHHHHHTCCCCCSSCSSBCCCTTSS
T ss_pred CCCCcceeCHhHccCcCCCCCCCCCcccccc-------CcCCCCcccCCCCccCCCCeeccCCCcccc
Confidence 3456778999999999999999999999543 356679988 889955599999976544
No 120
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.23 E-value=3.6e-05 Score=63.05 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=14.5
Q ss_pred ccccCCCC--CCCCCcc-cccccCCCcccc
Q 004911 333 RTRLCKDG--TSCDRRV-CFFAHTAEELRP 359 (724)
Q Consensus 333 rT~~C~~~--~~C~~~~-C~faH~~~e~r~ 359 (724)
++++|+.| +.|++|. |.|||+.+|||.
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~ 48 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAELHE 48 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHHHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHHHhh
Confidence 33555554 4555554 555555555554
No 121
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=97.22 E-value=7.4e-05 Score=62.28 Aligned_cols=56 Identities=27% Similarity=0.568 Sum_probs=44.6
Q ss_pred ccccCCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCC---CCCCCcccccccCCCccc
Q 004911 296 HYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG---TSCDRRVCFFAHTAEELR 358 (724)
Q Consensus 296 ~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~---~~C~~~~C~faH~~~e~r 358 (724)
.+....|..|..|.|.+|+.|.|.|... .-++..|++| +.|.+..|+|.|...+.|
T Consensus 13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~-------~~~~~~C~~f~~~G~C~~~~C~y~H~~p~~k 71 (72)
T 2rhk_C 13 GEKTVVCKHWLRGLCKKGDQCEFLHEYD-------MTKMSECYFYSKFGECSNKECPFLHIDPESK 71 (72)
T ss_dssp CCCCSBCHHHHTTCCCCGGGSSSBCSCC-------TTSCCBCHHHHHHSCCSBTTCCSBCCCCC--
T ss_pred CCcCeeCHHHhcCCCCCCCCCCCccccc-------cccCCcccccCCCCCCCCCCeeccCCCcccc
Confidence 3456789999999999999999999943 2467789985 789996699999876554
No 122
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=97.07 E-value=0.00012 Score=62.61 Aligned_cols=66 Identities=30% Similarity=0.663 Sum_probs=49.9
Q ss_pred ccCCCCCCCCCcCCCCC-CcccCCCcccccCCccccccccCCCC--CCCCCcccccccCCCccccccccCC
Q 004911 298 SCVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRPLYVSNG 365 (724)
Q Consensus 298 s~~~CP~~rkG~C~~Gd-~C~~aH~~~E~~~hP~~yrT~~C~~~--~~C~~~~C~faH~~~e~r~~~~~~~ 365 (724)
....|.+|..|.|.++| .|.|+|....... ..-+...|.+| +.|.|+.|+|.|.+..+..-...+|
T Consensus 8 ~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~--~~~~~~vC~dflkG~C~r~~C~y~H~~~~l~~~~~i~g 76 (83)
T 3d2n_A 8 TLEVCREFQRGTCSRPDTECKFAHPSKSCQV--ENGRVIACFDSLKGRCSRENCKYLHPPPHLKTQLEING 76 (83)
T ss_dssp EEEBCTTGGGTCCCSCTTTCSSBCCCTTCCE--ETTEEECCHHHHTTCCCCSSCSSCCCCHHHHHHHHHHT
T ss_pred cchhcHHHhcCCCCCCCCCCCCcCCCccccc--cCCceeehhHhhhccccCCCcceeCChHHHHHHHhcCC
Confidence 34579999999999998 9999999653211 13456679988 8899999999999887765443333
No 123
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=96.68 E-value=0.00024 Score=61.59 Aligned_cols=59 Identities=31% Similarity=0.703 Sum_probs=47.3
Q ss_pred cCCCCCCCCCcCCCCC-CcccCCCcccccCCccccccccCCCC--CCCCCcccccccCCCcccc
Q 004911 299 CVPCPDFRKGACRRGD-MCEYAHGVFECWLHPAQYRTRLCKDG--TSCDRRVCFFAHTAEELRP 359 (724)
Q Consensus 299 ~~~CP~~rkG~C~~Gd-~C~~aH~~~E~~~hP~~yrT~~C~~~--~~C~~~~C~faH~~~e~r~ 359 (724)
...|.+|..|.|.++| .|.|+|....... +.-+...|.+| +.|.|..|.|.|.+..|..
T Consensus 17 ~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v--~~~~~~vC~dflkG~C~r~~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 17 LEVCRQFQRGTCSRSDEECKFAHPPKSCQV--ENGRVIACFDSLKGRCSRENCKYLHPPTHLKT 78 (89)
T ss_dssp ECBCHHHHHTCCCCCTTTSSSBCCCSSSCC--BTTBEEBCHHHHHTCCCCTTCCSBCCCHHHHH
T ss_pred hhhchHHhcCCCCCCCCCCCCcCCCccccc--cCCceeeehhhhhCcCCCCCcceecCHHHHHH
Confidence 4569999999999999 9999999654321 13356779988 8999999999999877654
No 124
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.65 E-value=0.0002 Score=58.60 Aligned_cols=40 Identities=28% Similarity=0.606 Sum_probs=34.7
Q ss_pred CCCCCCCCCcCCCCCCcccCCCcccccC---CccccccccCCC
Q 004911 300 VPCPDFRKGACRRGDMCEYAHGVFECWL---HPAQYRTRLCKD 339 (724)
Q Consensus 300 ~~CP~~rkG~C~~Gd~C~~aH~~~E~~~---hP~~yrT~~C~~ 339 (724)
.+|..|.+|.|+.|+.|.||||..|+.. .+...++++|+-
T Consensus 21 ~LC~~~~~G~C~~G~~C~FAHG~~ELr~~~~R~~~~k~k~~~A 63 (69)
T 2d9m_A 21 SICDRYMNGTCPEGNSCKFAHGNAELHEWEERRDALKMKLNKA 63 (69)
T ss_dssp SBCHHHHHSCCSSCSSCSSBSSHHHHHHHHHHHHHHTTTCCSC
T ss_pred ccCcccCcCCCCCCCccCCcCCHHHHhhHHHHHHHHHHHHHHH
Confidence 9999998899999999999999999865 366778887764
No 125
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=96.29 E-value=0.0017 Score=54.40 Aligned_cols=32 Identities=38% Similarity=0.728 Sum_probs=28.2
Q ss_pred ccccccccCCCC---CCCCCcc-cccccCCCccccc
Q 004911 329 PAQYRTRLCKDG---TSCDRRV-CFFAHTAEELRPL 360 (724)
Q Consensus 329 P~~yrT~~C~~~---~~C~~~~-C~faH~~~e~r~~ 360 (724)
+..|||++|+.| +.|++|. |.|+|..+|+|.+
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~ 42 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA 42 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccc
Confidence 457999999977 6899998 9999999999964
No 126
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=88.60 E-value=0.077 Score=44.82 Aligned_cols=41 Identities=27% Similarity=0.668 Sum_probs=29.8
Q ss_pred cCCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCCCCCCCcccccccC
Q 004911 299 CVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHT 353 (724)
Q Consensus 299 ~~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~~~C~~~~C~faH~ 353 (724)
..+|..... |.+ ..|.|.|. ....|+++..|.+..|.|.|-
T Consensus 31 ~~~Cr~g~~--C~~-~~C~f~HP-----------~~~~Crf~~~C~n~~C~F~Hp 71 (80)
T 2lhn_A 31 HIMCREGAN--CTR-IDCLFGHP-----------INEDCRFGVNCKNIYCLFRHP 71 (80)
Confidence 346666554 776 45777774 136799999999988999994
No 127
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=88.64 E-value=0.23 Score=43.59 Aligned_cols=33 Identities=33% Similarity=0.886 Sum_probs=27.7
Q ss_pred CCCCcccCCCCCccCCCCccCccccCCCCCC-CCCcCCCCCCcccCCCc
Q 004911 275 WTECPFVHPGENARRRDPRKFHYSCVPCPDF-RKGACRRGDMCEYAHGV 322 (724)
Q Consensus 275 wteCpf~H~ge~arRRdPr~y~Ys~~~CP~~-rkG~C~~Gd~C~~aH~~ 322 (724)
...|+|.|. ..+|+.| ..|.|++|+.|.|.|..
T Consensus 27 G~~C~f~H~---------------~~~C~~f~~~G~C~~G~~C~f~H~~ 60 (98)
T 2cqe_A 27 AENCPYMHG---------------DFPCKLYHTTGNCINGDDCMFSHDP 60 (98)
T ss_dssp STTCSSBSS---------------SSBCSHHHHTSCCSSCTTCSSBCCC
T ss_pred CCCCCCCCC---------------CCcCcCcccCCcCCCCCCCcccCCC
Confidence 346888885 4679998 58999999999999985
No 128
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.58 E-value=0.26 Score=41.11 Aligned_cols=53 Identities=19% Similarity=0.403 Sum_probs=37.1
Q ss_pred cCCCCCCCCcccCCCCCccCCCCccCccccCCCCCCCC-CcCCCCCCcccCCCcccccCCccccccccCCCC
Q 004911 270 AYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRK-GACRRGDMCEYAHGVFECWLHPAQYRTRLCKDG 340 (724)
Q Consensus 270 ~~shdwteCpf~H~ge~arRRdPr~y~Ys~~~CP~~rk-G~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~ 340 (724)
+.+.....|.|.|..... ....|..|.+ |.|. ++.|.|.|... ..++..|.+|
T Consensus 19 G~C~~G~~C~fsH~~~~~----------~~~~C~~f~~~G~C~-~~~C~f~H~~~-------~~~~~~C~~f 72 (77)
T 2d9n_A 19 GLCKKGDQCEFLHEYDMT----------KMPECYFYSKFGECS-NKECPFLHIDP-------ESKIKDCPWS 72 (77)
T ss_dssp TCCSCTTSSSSBCSCCTT----------TSCBCHHHHHTCCCC-CSSCSSBCCCT-------TSSCSSSSCC
T ss_pred CcCCCCCCCCCccccccC----------cCCCCcccCCCCccC-CCCeeccCCCc-------cccCCCCccc
Confidence 334434579999965421 1246988887 9999 89999999943 3467778776
No 129
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=88.22 E-value=0.086 Score=44.52 Aligned_cols=41 Identities=29% Similarity=0.769 Sum_probs=32.3
Q ss_pred CCCCCCCCCcCCCCCCcccCCCcccccCCccccccccCCCCCCCCCcccccccC
Q 004911 300 VPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCDRRVCFFAHT 353 (724)
Q Consensus 300 ~~CP~~rkG~C~~Gd~C~~aH~~~E~~~hP~~yrT~~C~~~~~C~~~~C~faH~ 353 (724)
..|..+.. |.+ +.|.|.|... ...|++|..|.+..|.|+|-
T Consensus 10 e~CKf~~~--Ctn-~~C~f~Hp~~----------~~~Cr~g~~C~~~~C~f~HP 50 (80)
T 2lhn_A 10 EQCKFGTH--CTN-KRCKYRHARS----------HIMCREGANCTRIDCLFGHP 50 (80)
Confidence 45644454 888 8999999642 45899999999988999995
No 130
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=84.41 E-value=0.31 Score=40.25 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=25.4
Q ss_pred CccccccccCCCC--CCCCCcc-cccccCCCccc
Q 004911 328 HPAQYRTRLCKDG--TSCDRRV-CFFAHTAEELR 358 (724)
Q Consensus 328 hP~~yrT~~C~~~--~~C~~~~-C~faH~~~e~r 358 (724)
|-..+++..|++| +.|.+|. |.|+|..+..|
T Consensus 10 ~~~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~~ 43 (72)
T 2rhk_C 10 HMSGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTK 43 (72)
T ss_dssp SSSCCCCSBCHHHHTTCCCCGGGSSSBCSCCTTS
T ss_pred cCCCCcCeeCHHHhcCCCCCCCCCCCcccccccc
Confidence 3567889999988 8899987 99999976543
No 131
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=82.84 E-value=0.49 Score=38.73 Aligned_cols=45 Identities=29% Similarity=0.644 Sum_probs=32.4
Q ss_pred CCcccCCCCCccCCCCccCccccCCCCCCCCCcCCCCCCcccCCCcccc
Q 004911 277 ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFEC 325 (724)
Q Consensus 277 eCpf~H~ge~arRRdPr~y~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~ 325 (724)
+|+|.|+.+...- +.-.+....|-.|.+|.|.++ .|.|.|...++
T Consensus 23 ~C~f~H~~~~~~~---~~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 23 DCRFAHPADSTMI---DTNDNTVTVCMDYIKGRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp TCSSBCCCTTSCC---BTTTTEEEBCHHHHTTCCCCT-TCCSBCCCHHH
T ss_pred CCCCccCcccccc---cccCCcceeccccCcCCCCCC-CcCeeCCHHHH
Confidence 5999996642211 112345678999999999998 99999986543
No 132
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.43 E-value=0.66 Score=40.64 Aligned_cols=45 Identities=31% Similarity=0.672 Sum_probs=32.6
Q ss_pred CCcccCCCCCccCCCCccCccccCCCCCCCCCcCCCCCCcccCCCcccc
Q 004911 277 ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFEC 325 (724)
Q Consensus 277 eCpf~H~ge~arRRdPr~y~Ys~~~CP~~rkG~C~~Gd~C~~aH~~~E~ 325 (724)
.|+|.|+..... .+ .-......|-.|.+|.|.++ .|.|.|...++
T Consensus 37 ~C~FsH~~~~~~-~~--~~~~~~~vC~~flkG~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 37 DCRFAHPADSTM-ID--TSDNTVTVCMDYIKGRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp HCSSBCCSSCCS-CC--TTTCEEEBCHHHHHTCCCCT-TCCSBCCCHHH
T ss_pred CCCCcCCchhcc-cc--ccCCccccchhhccCCCCCC-CcCccCChHHH
Confidence 599999764321 11 12345678999999999998 99999996543
No 133
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=76.81 E-value=1.3 Score=33.74 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=20.7
Q ss_pred cccccCCCC---CCCCCcc-cccccCCC
Q 004911 332 YRTRLCKDG---TSCDRRV-CFFAHTAE 355 (724)
Q Consensus 332 yrT~~C~~~---~~C~~~~-C~faH~~~ 355 (724)
+.+..|..| +-|++|. |.|.|.++
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 678889976 8899998 99999976
No 134
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=68.31 E-value=2.3 Score=36.05 Aligned_cols=26 Identities=27% Similarity=0.659 Sum_probs=21.6
Q ss_pred cccccCCCC--CCCCCc--ccccccCCCcc
Q 004911 332 YRTRLCKDG--TSCDRR--VCFFAHTAEEL 357 (724)
Q Consensus 332 yrT~~C~~~--~~C~~~--~C~faH~~~e~ 357 (724)
.+...|++| +.|.|+ .|.|+|.++.+
T Consensus 7 ~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~ 36 (83)
T 3d2n_A 7 LTLEVCREFQRGTCSRPDTECKFAHPSKSC 36 (83)
T ss_dssp GEEEBCTTGGGTCCCSCTTTCSSBCCCTTC
T ss_pred ccchhcHHHhcCCCCCCCCCCCCcCCCccc
Confidence 456679999 889999 69999998754
No 135
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=66.94 E-value=0.96 Score=38.92 Aligned_cols=40 Identities=35% Similarity=0.733 Sum_probs=29.7
Q ss_pred CCcccCCCCCccCCCCccCccccCCCCCCCCCcCCCCCCcccCCCc
Q 004911 277 ECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGV 322 (724)
Q Consensus 277 eCpf~H~ge~arRRdPr~y~Ys~~~CP~~rkG~C~~Gd~C~~aH~~ 322 (724)
+|.|.|+....... .-.-..|-+|.+|.|.++ .|.|.|..
T Consensus 34 ~CrfsH~~~~~~v~-----~~~~~vC~dflkG~C~r~-~Cky~H~~ 73 (89)
T 2rpp_A 34 ECKFAHPPKSCQVE-----NGRVIACFDSLKGRCSRE-NCKYLHPP 73 (89)
T ss_dssp TSSSBCCCSSSCCB-----TTBEEBCHHHHHTCCCCT-TCCSBCCC
T ss_pred CCCCcCCCcccccc-----CCceeeehhhhhCcCCCC-CcceecCH
Confidence 79999977542111 223567888999999996 99999994
No 136
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=36.32 E-value=7.3 Score=39.44 Aligned_cols=24 Identities=42% Similarity=0.777 Sum_probs=19.5
Q ss_pred cCCCCCCCCCcCCCCCCcccCCCc
Q 004911 299 CVPCPDFRKGACRRGDMCEYAHGV 322 (724)
Q Consensus 299 ~~~CP~~rkG~C~~Gd~C~~aH~~ 322 (724)
+..|..|.+|.|.+|+.|.|-|..
T Consensus 70 ~~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 70 LFFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp CSBCHHHHTTCCSCGGGCSSBBSC
T ss_pred CeEcCccccCCCCCCCCCCccCCC
Confidence 347888888889999999998863
No 137
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=35.97 E-value=7.6 Score=38.85 Aligned_cols=23 Identities=30% Similarity=0.723 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCcc-cccccCCC
Q 004911 333 RTRLCKDGTSCDRRV-CFFAHTAE 355 (724)
Q Consensus 333 rT~~C~~~~~C~~~~-C~faH~~~ 355 (724)
+.++|.++..|.||. |.|.|-+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~ 214 (223)
T 3v33_A 191 RKQPCPYGRKCTYGIKCRFFHPER 214 (223)
T ss_dssp ------------------------
T ss_pred CCCCCCCCcccccCCcceecCCcc
Confidence 567899999999998 99999754
No 138
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=24.48 E-value=64 Score=35.70 Aligned_cols=122 Identities=13% Similarity=0.137 Sum_probs=70.8
Q ss_pred HHHHHHcCCHHHHHHHHhc---CCCCccccccccccccCCcccCCCCChHHHHHHHcC-C-------------HHHHHHH
Q 004911 30 MLELASNNDVEGFKRMLER---DPSSVDEVGLWYGRVNGSKQMVSEHRTPLMVAATYG-S-------------VDVLKLI 92 (724)
Q Consensus 30 Lh~AA~~G~le~Vk~LLe~---~gadIn~~gl~~a~~~g~~~~d~~G~TPLH~AA~~G-~-------------~evVklL 92 (724)
|-..++.|+++....|+++ .|...|.. -.+.|..|+..+ . .++.+.+
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~----------------tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M 96 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQY----------------HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM 96 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHH----------------HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHh----------------HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH
Confidence 4445678999877776653 45554443 234444444321 1 3455556
Q ss_pred HhcCCCCcccccCCCCCcHHHHHHhCCCC-CHHHHHHHHHHCCCCCCCCCCCCCcHHHHHhcCCCHHHHHHHHHHHHcCC
Q 004911 93 LLHSSADVNVSCGSDRTTALHCAASGGSA-NVVDVVRLLLSAGADPDCVDANGHHPIDVIVLPPKLDSMRAILEEVFGSK 171 (724)
Q Consensus 93 Le~~GADVN~~~d~~G~TPLH~Aa~~G~~-~~~eiVklLLe~GAd~n~~D~~G~TPLhlAa~~G~~eivk~LLe~Ll~~g 171 (724)
.+. |..+|.. .-.+-|...+..|.. .+.++++.+.+.|..++... -++.|...+..|..+-+..+++.+...|
T Consensus 97 ~~~-G~~Pd~~---tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--yn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 97 IVD-KVVPNEA---TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS--YGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHT-TCCCCHH---HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHh-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce--ehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 666 7777654 112334455566661 12344455556677776543 2345556677889888888888888777
Q ss_pred CC
Q 004911 172 NS 173 (724)
Q Consensus 172 a~ 173 (724)
..
T Consensus 171 ~~ 172 (501)
T 4g26_A 171 VV 172 (501)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 139
>1rpb_A Tricyclic peptide RP 71955; HIV replication inhibitor, replication inhibitor; NMR {Actinomycete SP9440} SCOP: j.24.1.1 PDB: 1rpc_A
Probab=23.00 E-value=29 Score=22.10 Aligned_cols=18 Identities=33% Similarity=0.796 Sum_probs=13.4
Q ss_pred ccCCCCCCCCCcc-ccccc
Q 004911 335 RLCKDGTSCDRRV-CFFAH 352 (724)
Q Consensus 335 ~~C~~~~~C~~~~-C~faH 352 (724)
..|.+|.+|-|.+ ||...
T Consensus 5 gscn~fagcgyaivcfw~~ 23 (26)
T 1rpb_A 5 GSCNDFAGCGYAVVCFWXX 23 (26)
T ss_dssp SSBCSSSSSCBBSSCCC--
T ss_pred ecccCcCCCceEEEEEEee
Confidence 3589999999976 99764
No 140
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=20.69 E-value=1.3e+02 Score=33.19 Aligned_cols=92 Identities=10% Similarity=0.036 Sum_probs=59.0
Q ss_pred hHHHHHHHcCCHHHHHHHHhc---CCCCcccccCCCCCcH-HHHHHhCCCC-CHHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 004911 75 TPLMVAATYGSVDVLKLILLH---SSADVNVSCGSDRTTA-LHCAASGGSA-NVVDVVRLLLSAGADPDCVDANGHHPID 149 (724)
Q Consensus 75 TPLH~AA~~G~~evVklLLe~---~GADVN~~~d~~G~TP-LH~Aa~~G~~-~~~eiVklLLe~GAd~n~~D~~G~TPLh 149 (724)
+.|...+..|..+-+..|++. .|..+|.. -+++ |...+..|.. .+.++.+.+.+.|..++... -.+-|.
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~----tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t--y~~Li~ 183 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR----SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE--LAALLK 183 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH--HHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc----eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHH
Confidence 455667788987665555432 27766655 2344 4445667761 23445566677888877643 234566
Q ss_pred HHhcCCCHHHHHHHHHHHHcCCC
Q 004911 150 VIVLPPKLDSMRAILEEVFGSKN 172 (724)
Q Consensus 150 lAa~~G~~eivk~LLe~Ll~~ga 172 (724)
..+..|+.+-+..+++.+...+.
T Consensus 184 ~~~~~g~~d~A~~ll~~Mr~~g~ 206 (501)
T 4g26_A 184 VSMDTKNADKVYKTLQRLRDLVR 206 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTS
T ss_pred HHhhCCCHHHHHHHHHHHHHhCC
Confidence 66789999999999988776664
Done!