BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 004913
(724 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I4K|A Chain A, Solution Structure Of The Px Domain Of Sorting Nexin 1
Length = 128
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 12/106 (11%)
Query: 68 VFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKN--IPPAPPKGLLRM--- 122
V Y+V P + V RRF++FL L+ L + + +PP P K L+ M
Sbjct: 22 VAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPPEKSLIGMTKV 81
Query: 123 -------KSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELE 161
S LE+RR +LE ++ ++++ + + V FLE E
Sbjct: 82 KVGKEDSSSAEFLEKRRAALERYLQRIVNHPTMLQDPDVREFLEKE 127
>pdb|3LUI|A Chain A, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
pdb|3LUI|B Chain B, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
pdb|3LUI|C Chain C, Crystal Structure Of The Snx17 Px Domain With Bound
Sulphate
Length = 115
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 87 GVLR---RFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLL 143
GVL R++ L L L+K + +P PPK L + + A +E+RR LE++M +
Sbjct: 32 GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSL-TPAEVEQRREQLEKYMQAVR 90
Query: 144 SDIDLSRSVSVASFL 158
D L S + SFL
Sbjct: 91 QDPLLGSSETFNSFL 105
>pdb|3FOG|A Chain A, Crystal Structure Of The Px Domain Of Sorting Nexin-17
(Snx17)
Length = 115
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 87 GVLR---RFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLL 143
GVL R++ L L L+K + +P PPK L + + A +E+RR LE++M +
Sbjct: 29 GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSL-TPAEVEQRREQLEKYMQAVR 87
Query: 144 SDIDLSRSVSVASFL 158
D L S + SFL
Sbjct: 88 QDPLLGSSETFNSFL 102
>pdb|3IQ2|A Chain A, Human Sorting Nexin 7, Phox Homology (Px) Domain
pdb|3IQ2|B Chain B, Human Sorting Nexin 7, Phox Homology (Px) Domain
Length = 138
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 70 YRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKKNIPPAPP----KGLLRMKSR 125
YR+ E ++ V RR+ +FL L L++A P IPP P KG++ +
Sbjct: 29 YRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLPEKFIVKGMVERFND 88
Query: 126 ALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSS 167
+E RR +L +++ ++ L+ + FL +A SS
Sbjct: 89 DFIETRRKALHKFLNRIADHPTLTFNEDFKIFLTAQAWELSS 130
>pdb|1XTE|A Chain A, Crystal Structure Of Cisk-Px Domain
Length = 154
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 88 VLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRA-LLEERRCSLEEWMTKLLSDI 146
V RR+ F KL+ LKK FP + P K + +++RR L E++ L+
Sbjct: 41 VFRRYAEFDKLYNSLKKQFPAMAL-KIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYP 99
Query: 147 DLSRSVSVASFLELEAAARSS 167
+L V +FL++++ S
Sbjct: 100 ELYNHPDVRAFLQMDSPRHQS 120
>pdb|2V14|A Chain A, Kinesin 16b Phox-Homology Domain (Kif16b)
Length = 134
Score = 34.7 bits (78), Expect = 0.21, Method: Composition-based stats.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 50 VTIPSWVVLPKSRDSDPVVFYRVQVGLQSPEGITTTRGVLRRFNNFLKLFTDLKKAFPKK 109
++IP +V+ + +D+ ++ V + T V RR++ F + LK + +
Sbjct: 8 ISIPRYVLCGQGKDAHFEFEVKITV-------LDETWTVFRRYSRFREXHKTLKLKYAEL 60
Query: 110 NIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLS 144
PPK L K ++ ERR LE+++ S
Sbjct: 61 AALEFPPKKLFGNKDERVIAERRSHLEKYLRDFFS 95
>pdb|1XTN|A Chain A, Crystal Structure Of Cisk-Px Domain With Sulfates
pdb|1XTN|B Chain B, Crystal Structure Of Cisk-Px Domain With Sulfates
Length = 120
Score = 34.3 bits (77), Expect = 0.27, Method: Composition-based stats.
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 88 VLRRFNNFLKLFTDLKKAFPKKNIPPAPPKGLLRMKSRALLEERRCSLEEWMTKLLSDID 147
V RR+ F KL+ LKK FP + + +++RR L E++ L+ +
Sbjct: 41 VFRRYAEFDKLYNSLKKQFPAMALKIPAKRIFGDNFDPDFIKQRRAGLNEFIQNLVRYPE 100
Query: 148 LSRSVSVASFLELEAAARSS 167
L V +FL++++ S
Sbjct: 101 LYNHPDVRAFLQMDSPRHQS 120
>pdb|3P0C|A Chain A, Nischarin Px-Domain
pdb|3P0C|B Chain B, Nischarin Px-Domain
Length = 130
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 115 PPKGLLRMKSRALLEERRCSLEEWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVN 172
PPK ++ SR+L+E+R LE ++ KLL+ +A FL F ++N
Sbjct: 78 PPKKIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAHFLHFH------FYEIN 129
>pdb|2E7I|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7I|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|A Chain A, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
pdb|2E7J|B Chain B, Crystal Structure Of Sep-Trna:cys-Trna Synthase From
Archaeoglobus Fulgidus
Length = 371
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 12/134 (8%)
Query: 436 KVKDLEVEL--ETTKQKSKETLQQAILSERERLTQMQWDMEELRQKSLEMEWKLKSKQDG 493
K K+ EVEL T + + TL + RER+ + ++E+ R+ + EME KL KQ G
Sbjct: 236 KYKNKEVELLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEME-KLGIKQLG 294
Query: 494 -NPHAESMEESTVKDKNVLQELDATKEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSS 552
NPH + VL E+ +K+ Y EL+++ IK + ++ + S
Sbjct: 295 DNPHNHDL---MFFHAEVLYEI--SKKAKGGRFFLYRELKSRKIHGIKPGL--TRYFKLS 347
Query: 553 QIGLK-QELSQMLN 565
GL +E+ +LN
Sbjct: 348 TYGLSDEEVDYVLN 361
>pdb|2H3B|A Chain A, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor 1
pdb|2H3B|B Chain B, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor 1
Length = 494
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 509 NVLQELDATK-----EQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQM 563
N+L D+ K + N SK Y E + K V++VK+ + GL+ L++
Sbjct: 13 NILXATDSYKVTHYKQYPPNTSKVYSYFECREKKTENSKVRKVKYEETVFYGLQYILNKY 72
Query: 564 LNEKSKTEELLQQERQTH 581
L K T+E +Q+ ++ +
Sbjct: 73 LKGKVVTKEKIQEAKEVY 90
>pdb|2E5B|A Chain A, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5B|B Chain B, Crystal Structure Of Human Nmprtase As Free-Form
pdb|2E5C|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5C|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
5'-Phosphoribosyl- 1'-Pyrophosphate
pdb|2E5D|A Chain A, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
pdb|2E5D|B Chain B, Crystal Structure Of Human Nmprtase Complexed With
Nicotinamide
Length = 499
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 12/100 (12%)
Query: 487 LKSKQDGNPHAESMEESTVKDKNVLQELDATK-----EQLENLSKRYEELEAKSKADIKV 541
L S Q NP AE+ + N+L D+ K + N SK Y E + K
Sbjct: 3 LGSPQFMNPAAEA-------EFNILLATDSYKVTHYKQYPPNTSKVYSYFECREKKTENS 55
Query: 542 LVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQERQTH 581
+++VK+ + GL+ L++ L K T+E +Q+ + +
Sbjct: 56 KLRKVKYEETVFYGLQYILNKYLKGKVVTKEKIQEAKDVY 95
>pdb|2H3D|A Chain A, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
pdb|2H3D|B Chain B, Crystal Structure Of Mouse Nicotinamide
PhosphoribosyltransferaseVISFATINPRE-B Cell Colony
Enhancing Factor In Complex With Nicotinamide
Mononuleotide
Length = 494
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 518 KEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQE 577
K+ N SK Y E + K V++VK+ + GL+ L++ L K T+E +Q+
Sbjct: 27 KQYPPNTSKVYSYFECREKKTENSKVRKVKYEETVFYGLQYILNKYLKGKVVTKEKIQEA 86
Query: 578 RQTH 581
++ +
Sbjct: 87 KEVY 90
>pdb|2G95|A Chain A, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G95|B Chain B, Crystal Structure Of VisfatinPRE-B Cell Colony Enhancing
Factor 1NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE
pdb|2G96|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G96|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With Niconamide Mononucleotide
pdb|2G97|A Chain A, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|2G97|B Chain B, Crystal Structure Of Visfatin/pre-b Cell Colony Enhancing
Factor 1/nicotinamide Phosphoribosyltransferase In
Complex With The Specific Inhibitor Fk-866
pdb|3G8E|A Chain A, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
pdb|3G8E|B Chain B, Crystal Structure Of Rattus Norvegicus VisfatinPBEFNAMPT
In Complex With An Fk866-Based Inhibitor
Length = 491
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 518 KEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQE 577
K+ N SK Y E + K V++VK+ + GL+ L++ L K T+E +Q+
Sbjct: 24 KQYPPNTSKVYSYFECREKKTENSKVRKVKYEETVFYGLQYILNKYLKGKVVTKEKIQEA 83
Query: 578 RQTH 581
++ +
Sbjct: 84 KEVY 87
>pdb|2GVL|A Chain A, Crystal Structure Of Murine Nmprtase
pdb|2GVL|B Chain B, Crystal Structure Of Murine Nmprtase
Length = 491
Score = 30.0 bits (66), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 518 KEQLENLSKRYEELEAKSKADIKVLVKEVKFLRSSQIGLKQELSQMLNEKSKTEELLQQE 577
K+ N SK Y E + K V++VK+ + GL+ L++ L K T+E +Q+
Sbjct: 24 KQYPPNTSKVYSYFECREKKTENSKVRKVKYEETVFYGLQYILNKYLKGKVVTKEKIQEA 83
Query: 578 RQTH 581
++ +
Sbjct: 84 KEVY 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,576,278
Number of Sequences: 62578
Number of extensions: 731325
Number of successful extensions: 1738
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 1694
Number of HSP's gapped (non-prelim): 78
length of query: 724
length of database: 14,973,337
effective HSP length: 106
effective length of query: 618
effective length of database: 8,340,069
effective search space: 5154162642
effective search space used: 5154162642
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)